Citrus Sinensis ID: 036387

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330----
MGSSLRLSEPMMLVKPSLSSLFAPRLNRTNAQAQQPRFISTSRACSLPSSDSSSSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG
ccccEEEccccccccccccccccccccccccccccccEEEEEcccEEEcccccccccccccccccccccEEEEEEEEEEEcccEEEEEcccccEEEEcccccccEEEcccccccEEEEEEEEEcccccEEEEEEcccEEEEEEccccccEEccccccccccccEEEEEEEEEccEEEEEEcccEEEEEcccccccEEccccccccccccEEcccccHHHccccccEEEEcccEEEEEcccEEEEEccccccEEEEEcccccccccEEEEEEccccEEEEEEcccEEEEEcccccccEEEcccccccccEEEEEEEEccEEEEEEcccEEEEEcc
ccccEEccccEEEEccccHHHHccHHHHHHHHHcccccEEcccHcEcccccccccccccccccccccHHHHHHHHHHHHHcccEEEEEccccEEEEEccccccEEEEEccccccccEEEEEEEcccccccEEEcccEEEEEEcccccccHHHcccccccccccccEEEEEEccccEEEEccccEEEEEcccccccEHccccccccccccccccccccccHHHHHEEEcccccEEEEEcccEEEEEcccccccEEEcccccccccEEEEEEEcccccEEEEEcccEEEEEccccccEEEccccccccccccEEEEEccccEEEEccccEEEEEEc
mgsslrlsepmmlvkpslsslfaprlnrtnaqaqqprfistsracslpssdsssssssssssssslnrrQFVSQTATLSLSISLAAttglyeqpakseEALSAWERVyipvdpgvvlldiafvpddlnhgfllgtRQTLLetkdggktwaprsipsaeeedfnyrfnsisfkgkegwivgkpaillhtsdagesweriplssqlpgdmafwqpHNRAVARRIQNMGWRADGGLWLLVRGgglflskgtgiteefeevpvqsrgfgildvgyrsqdeawaaggsgvllkttnggktWIREKAADNIAANLYSVKfinekkgfvlgnDGVLLQYLG
mgsslrlsepmMLVKPSLSSLFAPRLNRtnaqaqqprfistsracslpssdsssssssssssssslnRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTlletkdggktwaprsipsaeeedfnYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITeefeevpvqsrGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG
MGSSLRLSEPMMLVKPSLSSLFAPRLNRTNAQAQQPRFISTSRACSLPssdssssssssssssssLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADgglwllvrggglflSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG
****************************************************************************TLSLSISLAATTGLYE******EALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWA**********DFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQY**
**SSL*LSEPMMLVK*S********LNRTNAQAQQPRFISTSRACSLPSSDSSSSSS*********NRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG
********EPMMLVKPSLSSLFAPRLNRTN*******************************************QTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG
***SLRLSEPMMLVKPSLSSLFAPRLNRTNAQAQQPRFISTSRACSLPSSD********SSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGSSLRLSEPMMLVKPSLSSLFAPRLNRTNAQAQQPRFISTSRACSLPSSDSSSSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query334 2.2.26 [Sep-21-2011]
Q5Z5A8416 Photosystem II stability/ yes no 0.814 0.653 0.418 2e-64
O82660403 Photosystem II stability/ yes no 0.296 0.245 0.872 5e-62
Q8DI95347 Ycf48-like protein OS=The yes no 0.691 0.665 0.328 2e-41
P48325333 Photosystem II stability/ N/A no 0.670 0.672 0.347 2e-38
Q8RSW4340 Ycf48-like protein OS=Syn yes no 0.742 0.729 0.325 2e-36
Q31P11349 Ycf48-like protein OS=Syn yes no 0.628 0.601 0.334 2e-36
Q5N557349 Ycf48-like protein OS=Syn yes no 0.628 0.601 0.331 2e-35
Q2JW20334 Ycf48-like protein OS=Syn yes no 0.742 0.742 0.309 1e-33
Q7V301337 Ycf48-like protein OS=Pro yes no 0.775 0.768 0.276 5e-32
Q2JJR3333 Ycf48-like protein OS=Syn yes no 0.673 0.675 0.31 2e-30
>sp|Q5Z5A8|P2SAF_ORYSJ Photosystem II stability/assembly factor HCF136, chloroplastic OS=Oryza sativa subsp. japonica GN=HCF136 PE=3 SV=1 Back     alignment and function desciption
 Score =  246 bits (627), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 164/392 (41%), Positives = 209/392 (53%), Gaps = 120/392 (30%)

Query: 59  SSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEE--ALSAWERVYIPVDPGVV 116
           + + S S  RR+F++ TAT S + ++          A++++  +LS WERV +P+DPGVV
Sbjct: 29  AHTDSISTGRRRFIADTATASAAAAVGPLVLPRTPLARADQPPSLSEWERVLLPIDPGVV 88

Query: 117 LLDIAFVP-----------------------------------DDLNH-----------G 130
           LLDIAFVP                                   +D N+           G
Sbjct: 89  LLDIAFVPDDPSHGFLLGTRQTILETKNGGNTWFPRSIPSAEDEDFNYRFNSVSFMGKEG 148

Query: 131 FLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLHTSD 190
           +++G    LL T D G +W    IP + +   N  +   + +     +  + AI + TS+
Sbjct: 149 WIIGKPAILLHTSDAGDSW--ERIPLSAQLPGNMVYIKATGEQSAEMVTDEGAIYV-TSN 205

Query: 191 AGESWE---------------------------------------RIPLSSQ-------L 204
            G +W+                                        + +SS+        
Sbjct: 206 RGYNWKAAVQETVSATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWE 265

Query: 205 PGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTG--------------- 249
           PG   FWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKG+G               
Sbjct: 266 PG-QPFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGSGFQFFYRGLNDAHAIS 324

Query: 250 -------ITEEFEEVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAA 302
                  ITE+FEE  VQSRGFGILDVGYRS+DEAWAAGGSGVLLKTTNGGKTW+R+KAA
Sbjct: 325 YLHPPNQITEDFEEASVQSRGFGILDVGYRSKDEAWAAGGSGVLLKTTNGGKTWVRDKAA 384

Query: 303 DNIAANLYSVKFINEKKGFVLGNDGVLLQYLG 334
           DNIAANLYSVKF+ + KG+VLGNDGVLL+Y+G
Sbjct: 385 DNIAANLYSVKFLGDNKGYVLGNDGVLLRYVG 416
Essential for photosystem II (PSII) biogenesis; required for assembly of an early intermediate in PSII assembly that includes D2 (psbD) and cytochrome b559.
Oryza sativa subsp. japonica (taxid: 39947)
>sp|O82660|P2SAF_ARATH Photosystem II stability/assembly factor HCF136, chloroplastic OS=Arabidopsis thaliana GN=HCF136 PE=1 SV=1 Back     alignment and function description
>sp|Q8DI95|YC48L_THEEB Ycf48-like protein OS=Thermosynechococcus elongatus (strain BP-1) GN=tll1695 PE=1 SV=1 Back     alignment and function description
>sp|P48325|P2SAF_CYAPA Photosystem II stability/assembly factor HCF136 OS=Cyanophora paradoxa GN=hcf136 PE=3 SV=1 Back     alignment and function description
>sp|Q8RSW4|YC48L_SYNP2 Ycf48-like protein OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=SYNPCC7002_A0229 PE=3 SV=1 Back     alignment and function description
>sp|Q31P11|YC48L_SYNE7 Ycf48-like protein OS=Synechococcus elongatus (strain PCC 7942) GN=Synpcc7942_1178 PE=3 SV=1 Back     alignment and function description
>sp|Q5N557|YC48L_SYNP6 Ycf48-like protein OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=syc0372_d PE=3 SV=1 Back     alignment and function description
>sp|Q2JW20|YC48L_SYNJA Ycf48-like protein OS=Synechococcus sp. (strain JA-3-3Ab) GN=CYA_0848 PE=3 SV=2 Back     alignment and function description
>sp|Q7V301|YC48L_PROMP Ycf48-like protein OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=PMM0296 PE=3 SV=1 Back     alignment and function description
>sp|Q2JJR3|YC48L_SYNJB Ycf48-like protein OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=CYB_2153 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query334
356540980352 PREDICTED: photosystem II stability/asse 0.775 0.735 0.624 1e-102
224096552394 predicted protein [Populus trichocarpa] 0.895 0.758 0.459 4e-77
225423755404 PREDICTED: photosystem II stability/asse 0.916 0.757 0.438 1e-75
242097170397 hypothetical protein SORBIDRAFT_10g03112 0.832 0.700 0.449 2e-71
413943044394 plastid high chlorophyll fluorescence 13 0.829 0.703 0.445 1e-70
148251625394 plastid high chlorophyll fluorescence 13 0.829 0.703 0.445 2e-70
218198925 1485 hypothetical protein OsI_24541 [Oryza sa 0.685 0.154 0.470 9e-68
222636266 1553 hypothetical protein OsJ_22738 [Oryza sa 0.685 0.147 0.470 1e-67
357117071339 PREDICTED: photosystem II stability/asse 0.736 0.725 0.459 1e-66
357473927396 Photosystem II stability/assembly factor 0.847 0.714 0.437 5e-66
>gi|356540980|ref|XP_003538962.1| PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 196/314 (62%), Positives = 227/314 (72%), Gaps = 55/314 (17%)

Query: 68  RRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDDL 127
           RR+F+++TA LS+S+   A        A++E+ALS WERVY+P+DPGVVLLDIAFVPDD 
Sbjct: 47  RRRFIAETAALSVSLPQLA--------ARAEDALSEWERVYLPIDPGVVLLDIAFVPDDP 98

Query: 128 NHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILLH 187
           NHGFLLGTRQT+LETKDGG TWAPRSIPSAE+EDFNYRFNSISFKGKEGWIVGKPAILL+
Sbjct: 99  NHGFLLGTRQTILETKDGGNTWAPRSIPSAEDEDFNYRFNSISFKGKEGWIVGKPAILLY 158

Query: 188 TSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMG-----------WRA------- 229
           TSDAG+SWERIPLS++LPGDM + +      A  + + G           WRA       
Sbjct: 159 TSDAGDSWERIPLSAELPGDMVYIKATGEKSAEMVTDEGAIYVTANRGYNWRAAVQETVS 218

Query: 230 ----------------------------DGGLWLLVRGGGLFLSKGTG-ITEEFEEVPVQ 260
                                       DG    +   G  +L+   G +TEEFEEVPVQ
Sbjct: 219 ATLNRTVSSGISGASYYTGTFNTVNRSPDGRYVAVSSRGNFYLTWEPGQLTEEFEEVPVQ 278

Query: 261 SRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKG 320
           SRGFGILDVGYRS DEAWAAGGSG+LL+TTNGGK+WIR+KAADNIAANLYSVKFI+EKKG
Sbjct: 279 SRGFGILDVGYRSTDEAWAAGGSGILLRTTNGGKSWIRDKAADNIAANLYSVKFIDEKKG 338

Query: 321 FVLGNDGVLLQYLG 334
           FVLGNDGVLL+YLG
Sbjct: 339 FVLGNDGVLLRYLG 352

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224096552|ref|XP_002310654.1| predicted protein [Populus trichocarpa] gi|222853557|gb|EEE91104.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225423755|ref|XP_002278958.1| PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic [Vitis vinifera] gi|297737938|emb|CBI27139.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|242097170|ref|XP_002439075.1| hypothetical protein SORBIDRAFT_10g031120 [Sorghum bicolor] gi|241917298|gb|EER90442.1| hypothetical protein SORBIDRAFT_10g031120 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|413943044|gb|AFW75693.1| plastid high chlorophyll fluorescence 136 Precursor [Zea mays] Back     alignment and taxonomy information
>gi|148251625|gb|ABQ53629.1| plastid high chlorophyll fluorescence 136 precursor [Zea mays] Back     alignment and taxonomy information
>gi|218198925|gb|EEC81352.1| hypothetical protein OsI_24541 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|222636266|gb|EEE66398.1| hypothetical protein OsJ_22738 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|357117071|ref|XP_003560298.1| PREDICTED: photosystem II stability/assembly factor HCF136, chloroplastic-like [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|357473927|ref|XP_003607248.1| Photosystem II stability/assembly factor HCF136 [Medicago truncatula] gi|355508303|gb|AES89445.1| Photosystem II stability/assembly factor HCF136 [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query334
TAIR|locus:2178262403 HCF136 "HIGH CHLOROPHYLL FLUOR 0.413 0.342 0.736 4.5e-111
UNIPROTKB|Q480K3344 CPS_2804 "BNR repeat protein" 0.649 0.630 0.216 1e-05
TIGR_CMR|CPS_2804344 CPS_2804 "BNR repeat protein" 0.649 0.630 0.216 1e-05
TAIR|locus:2178262 HCF136 "HIGH CHLOROPHYLL FLUORESCENCE 136" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 560 (202.2 bits), Expect = 4.5e-111, Sum P(3) = 4.5e-111
 Identities = 106/144 (73%), Positives = 126/144 (87%)

Query:    67 NRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDPGVVLLDIAFVPDD 126
             +RR+ + Q+A +SLS+S  +  G    PA+++E LS WERV++P+DPGVVLLDIAFVPD+
Sbjct:    54 SRRELLYQSAAVSLSLS--SIVG----PARADEQLSEWERVFLPIDPGVVLLDIAFVPDE 107

Query:   127 LNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFNYRFNSISFKGKEGWIVGKPAILL 186
              + GFLLGTRQTLLETKDGG TW PRSIPSAEEEDFNYRFNSISFKGKEGWI+GKPAILL
Sbjct:   108 PSRGFLLGTRQTLLETKDGGSTWNPRSIPSAEEEDFNYRFNSISFKGKEGWIIGKPAILL 167

Query:   187 HTSDAGESWERIPLSSQLPGDMAF 210
             +T+DAGE+W+RIPLSSQLPGDM F
Sbjct:   168 YTADAGENWDRIPLSSQLPGDMVF 191
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0030095 "chloroplast photosystem II" evidence=ISS
GO:0009543 "chloroplast thylakoid lumen" evidence=ISS;IDA
GO:0031977 "thylakoid lumen" evidence=IDA
GO:0009579 "thylakoid" evidence=IDA
GO:0006461 "protein complex assembly" evidence=IMP
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0006364 "rRNA processing" evidence=RCA
GO:0009637 "response to blue light" evidence=RCA
GO:0009657 "plastid organization" evidence=IMP;RCA
GO:0009902 "chloroplast relocation" evidence=RCA
GO:0010027 "thylakoid membrane organization" evidence=RCA
GO:0010114 "response to red light" evidence=RCA
GO:0010207 "photosystem II assembly" evidence=RCA
GO:0010218 "response to far red light" evidence=RCA
GO:0010304 "PSII associated light-harvesting complex II catabolic process" evidence=RCA
GO:0015995 "chlorophyll biosynthetic process" evidence=RCA
GO:0016117 "carotenoid biosynthetic process" evidence=RCA
GO:0034660 "ncRNA metabolic process" evidence=RCA
GO:0035304 "regulation of protein dephosphorylation" evidence=RCA
GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA
GO:0042793 "transcription from plastid promoter" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0009533 "chloroplast stromal thylakoid" evidence=IDA
UNIPROTKB|Q480K3 CPS_2804 "BNR repeat protein" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_2804 CPS_2804 "BNR repeat protein" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P84561P2SAF_POPEUNo assigned EC number1.00.07781.0N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
PLN00033398 PLN00033, PLN00033, photosystem II stability/assem 1e-83
PLN00033398 PLN00033, PLN00033, photosystem II stability/assem 5e-76
PRK13684334 PRK13684, PRK13684, Ycf48-like protein; Provisiona 4e-73
COG4447339 COG4447, COG4447, Uncharacterized protein related 1e-32
COG4447 339 COG4447, COG4447, Uncharacterized protein related 5e-06
>gnl|CDD|215035 PLN00033, PLN00033, photosystem II stability/assembly factor; Provisional Back     alignment and domain information 
 Score =  257 bits (659), Expect = 1e-83
 Identities = 114/173 (65%), Positives = 131/173 (75%), Gaps = 1/173 (0%)

Query: 38  FISTSRACSLPSSDSSSSSSSSSSSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKS 97
           F S +RA     S + SS+ +  SS+SS NRR F+ QTAT + +  L         PA +
Sbjct: 12  FASNNRAAFSTVSKTVSSNVNELSSNSSENRRSFLRQTATAA-AALLLLPLLGPSAPADA 70

Query: 98  EEALSAWERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSA 157
            E  S WE+V +P+DPGVVLLDIAFVPDD  HGFLLGTRQTLLETKDGGKTW PRSIPSA
Sbjct: 71  AEQSSEWEQVDLPIDPGVVLLDIAFVPDDPTHGFLLGTRQTLLETKDGGKTWVPRSIPSA 130

Query: 158 EEEDFNYRFNSISFKGKEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAF 210
           E+EDFNYRFNSISFKGKEGWI+GKPAILLHTSD GE+WERIPLS +LPG+   
Sbjct: 131 EDEDFNYRFNSISFKGKEGWIIGKPAILLHTSDGGETWERIPLSPKLPGEPVL 183

Length = 398
>gnl|CDD|215035 PLN00033, PLN00033, photosystem II stability/assembly factor; Provisional Back     alignment and domain information
>gnl|CDD|237468 PRK13684, PRK13684, Ycf48-like protein; Provisional Back     alignment and domain information
>gnl|CDD|226855 COG4447, COG4447, Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only] Back     alignment and domain information
>gnl|CDD|226855 COG4447, COG4447, Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 334
PF14870302 PSII_BNR: Photosynthesis system II assembly factor 100.0
PLN00033398 photosystem II stability/assembly factor; Provisio 100.0
PRK13684334 Ycf48-like protein; Provisional 100.0
PF14870302 PSII_BNR: Photosynthesis system II assembly factor 99.97
COG4447339 Uncharacterized protein related to plant photosyst 99.97
PRK13684334 Ycf48-like protein; Provisional 99.96
COG4447339 Uncharacterized protein related to plant photosyst 99.88
PLN00033 398 photosystem II stability/assembly factor; Provisio 99.85
PF13088275 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 99.48
smart00602 612 VPS10 VPS10 domain. 99.45
smart00602 612 VPS10 VPS10 domain. 99.08
cd00260351 Sialidase Sialidases or neuraminidases function to 98.92
PF13088275 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 98.92
cd00260351 Sialidase Sialidases or neuraminidases function to 98.15
KOG3511 720 consensus Sortilin and related receptors [General 97.95
PF0201212 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Membe 97.37
PF0201212 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Membe 97.25
KOG3511 720 consensus Sortilin and related receptors [General 97.2
PF14517229 Tachylectin: Tachylectin; PDB: 1TL2_A. 97.08
PF13859310 BNR_3: BNR repeat-like domain; PDB: 3B69_A. 96.64
PF14517229 Tachylectin: Tachylectin; PDB: 1TL2_A. 96.54
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 95.62
PHA02713557 hypothetical protein; Provisional 94.57
PHA02790480 Kelch-like protein; Provisional 94.5
KOG0645312 consensus WD40 repeat protein [General function pr 93.91
COG3292 671 Predicted periplasmic ligand-binding sensor domain 93.03
KOG0645312 consensus WD40 repeat protein [General function pr 92.99
KOG0310 487 consensus Conserved WD40 repeat-containing protein 91.63
KOG3669 705 consensus Uncharacterized conserved protein, conta 91.17
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 91.1
PHA02790480 Kelch-like protein; Provisional 90.83
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 89.92
KOG3669 705 consensus Uncharacterized conserved protein, conta 89.02
COG3292 671 Predicted periplasmic ligand-binding sensor domain 88.28
KOG0278334 consensus Serine/threonine kinase receptor-associa 88.17
PF13859310 BNR_3: BNR repeat-like domain; PDB: 3B69_A. 87.43
smart0070635 TECPR Beta propeller repeats in Physarum polycepha 86.22
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 85.77
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 85.75
PHA03098534 kelch-like protein; Provisional 85.47
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 84.83
COG4946 668 Uncharacterized protein related to the periplasmic 83.61
PHA02713557 hypothetical protein; Provisional 82.25
PHA03098534 kelch-like protein; Provisional 80.3
KOG0296 399 consensus Angio-associated migratory cell protein 80.17
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A Back     alignment and domain information 
Probab=100.00  E-value=3.1e-39  Score=298.93  Aligned_cols=258  Identities=36%  Similarity=0.692  Sum_probs=177.0

Q ss_pred             CCCcccccceeeeccccccceeEEEecCCCccceEEecCCCCCcEEcccCCCC--CeeeEEEEEecCCCCEEEEEEcCCe
Q 036387           61 SSSSSLNRRQFVSQTATLSLSISLAATTGLYEQPAKSEEALSAWERVYIPVDP--GVVLLDIAFVPDDLNHGFLLGTRQT  138 (334)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~a~g~~~~~g~~~~g~i~~S~DgG~tW~~~~~p~~~--~~~l~~I~~~p~d~~~~~avG~~g~  138 (334)
                      ..+..+.++.|++...++++      |..  +.|++|+|||+||+.+..+...  ...+++|.|.   .+.+|++|+.|.
T Consensus        14 ~t~~~l~dV~F~d~~~G~~V------G~~--g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~---~~~g~ivG~~g~   82 (302)
T PF14870_consen   14 PTDKPLLDVAFVDPNHGWAV------GAY--GTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFD---GNEGWIVGEPGL   82 (302)
T ss_dssp             S-SS-EEEEEESSSS-EEEE------ETT--TEEEEESSTTSS-EE-----S-----EEEEEEEE---TTEEEEEEETTE
T ss_pred             CCCCceEEEEEecCCEEEEE------ecC--CEEEEECCCCccccccccCCCccceeeEEEEEec---CCceEEEcCCce
Confidence            34557888898877777554      454  7899999999999998755432  3678899996   267999999999


Q ss_pred             EEEEcCCCcCeEeCcCCCCcccCcceeEEEEEE-eCCeEEEEEcCCEEEEEcCCCCCeEEeecCCC--------CC----
Q 036387          139 LLETKDGGKTWAPRSIPSAEEEDFNYRFNSISF-KGKEGWIVGKPAILLHTSDAGESWERIPLSSQ--------LP----  205 (334)
Q Consensus       139 i~~S~DgG~TW~~~~~p~~~~~~~~~~~~~I~~-~~~~~~~vG~~g~i~~S~DgG~TW~~~~~~~~--------l~----  205 (334)
                      ||+|+|+|+||+++.++...+.    .+..|.+ .++.+++++..|.||+|+|+|+||+.+.....        .+    
T Consensus        83 ll~T~DgG~tW~~v~l~~~lpg----s~~~i~~l~~~~~~l~~~~G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~  158 (302)
T PF14870_consen   83 LLHTTDGGKTWERVPLSSKLPG----SPFGITALGDGSAELAGDRGAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRY  158 (302)
T ss_dssp             EEEESSTTSS-EE----TT-SS-----EEEEEEEETTEEEEEETT--EEEESSTTSSEEEEE-S----EEEEEE-TTS-E
T ss_pred             EEEecCCCCCcEEeecCCCCCC----CeeEEEEcCCCcEEEEcCCCcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcE
Confidence            9999999999999876533221    2234443 46888899999999999999999999865421        01    


Q ss_pred             ------C--------CcccccccCccccceEeeeeEeecCCEEEEEcCCeEEEec--CCCcceeeEeccccCCCeeeEEE
Q 036387          206 ------G--------DMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLSK--GTGITEEFEEVPVQSRGFGILDV  269 (334)
Q Consensus       206 ------g--------~~~~~~~~~~~~~~~i~~~~~~~~g~~~~~~~~g~i~~S~--D~G~tW~w~~~~~~~~~~~~~~v  269 (334)
                            |        ...+|.+|++...++|++|+|.+++.+|+++..|.|++|.  |.+.+|+....++...+++++++
T Consensus       159 vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~  238 (302)
T PF14870_consen  159 VAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDL  238 (302)
T ss_dssp             EEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEE
T ss_pred             EEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCccccccccCCcccCceeeEEE
Confidence                  1        1157889999889999999999999999999999999998  66776533224444556789999


Q ss_pred             EeecCCeEEEEeCCCcEEEEcCCCcCcEEcccCCCcccceeEEEEeeCCeEEEEeCCeeEEEEc
Q 036387          270 GYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYL  333 (334)
Q Consensus       270 ~~~~~~~~~~~G~~G~i~~S~DgG~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G~~G~il~s~  333 (334)
                      +|++++++|++|..|.||+|+|+|+||++.+..++.+.+|+.|.|.++++.|++|++|+|||+.
T Consensus       239 a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~~  302 (302)
T PF14870_consen  239 AYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRYV  302 (302)
T ss_dssp             EESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE-
T ss_pred             EecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEeC
Confidence            9999999999999999999999999999998866778899999999999999999999999984

>PLN00033 photosystem II stability/assembly factor; Provisional Back     alignment and domain information
>PRK13684 Ycf48-like protein; Provisional Back     alignment and domain information
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A Back     alignment and domain information
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only] Back     alignment and domain information
>PRK13684 Ycf48-like protein; Provisional Back     alignment and domain information
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only] Back     alignment and domain information
>PLN00033 photosystem II stability/assembly factor; Provisional Back     alignment and domain information
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A Back     alignment and domain information
>smart00602 VPS10 VPS10 domain Back     alignment and domain information
>smart00602 VPS10 VPS10 domain Back     alignment and domain information
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions Back     alignment and domain information
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A Back     alignment and domain information
>cd00260 Sialidase Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions Back     alignment and domain information
>KOG3511 consensus Sortilin and related receptors [General function prediction only] Back     alignment and domain information
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes Back     alignment and domain information
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes Back     alignment and domain information
>KOG3511 consensus Sortilin and related receptors [General function prediction only] Back     alignment and domain information
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A Back     alignment and domain information
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A Back     alignment and domain information
>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>KOG0645 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG0645 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>PF13859 BNR_3: BNR repeat-like domain; PDB: 3B69_A Back     alignment and domain information
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
2xbg_A327 Crystal Structure Of Ycf48 From Thermosynechococcus 3e-36
>pdb|2XBG|A Chain A, Crystal Structure Of Ycf48 From Thermosynechococcus Elongatus Length = 327 Back     alignment and structure 
Iteration: 1

 Score =  149 bits (375), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 146/302 (48%), Gaps = 81/302 (26%)
Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
           WE + +P      +LD++F+  D +HG+L+G   TL+ET+DGG+TW PR++     +  +
Sbjct: 27  WEAIQLPTT--ATILDMSFI--DRHHGWLVGVNATLMETRDGGQTWEPRTL---VLDHSD 79
Query: 164 YRFNSISFKGKEGWIVGKPAILLH------------------------------------ 187
           YRFNS+SF+G EGWIVG+P I+LH                                    
Sbjct: 80  YRFNSVSFQGNEGWIVGEPPIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT 139
Query: 188 -------TSDAGESW--------------------ERIPLSSQ-------LPGDMAFWQP 213
                  T D+G++W                    E + +SS+        PG  A W+P
Sbjct: 140 NVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTA-WEP 198
Query: 214 HNRAVARRIQNMGWRADXXXXXXXXXXXXXXSKGTGITEEFEEV--PVQSRGFGILDVGY 271
           HNR  +RR+ NMG+  D              S     +E + E+  P++    G LD+ Y
Sbjct: 199 HNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDN-SENWGELLSPLRRNSVGFLDLAY 257
Query: 272 RSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQ 331
           R+ +E W AGG+G LL + +GG+TW ++     + +N Y + F +  +GF+LG  G+LL+
Sbjct: 258 RTPNEVWLAGGAGALLCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLR 317
Query: 332 YL 333
           Y+
Sbjct: 318 YV 319

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query334
2xbg_A327 YCF48-like protein; photosynthesis, photosystem II 3e-40
2xbg_A327 YCF48-like protein; photosynthesis, photosystem II 3e-31
2xbg_A 327 YCF48-like protein; photosynthesis, photosystem II 1e-13
2xbg_A327 YCF48-like protein; photosynthesis, photosystem II 2e-10
2cn3_A737 Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc 8e-09
2cn3_A737 Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc 1e-07
2cn3_A 737 Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc 3e-04
2cn3_A 737 Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc 9e-04
3b7f_A 394 Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop 3e-08
3b7f_A394 Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop 5e-06
3b7f_A394 Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop 7e-05
1sqj_A789 OXG-RCBH, oligoxyloglucan reducing-END-specific ce 4e-07
1sqj_A 789 OXG-RCBH, oligoxyloglucan reducing-END-specific ce 6e-07
1sqj_A 789 OXG-RCBH, oligoxyloglucan reducing-END-specific ce 2e-06
1sqj_A789 OXG-RCBH, oligoxyloglucan reducing-END-specific ce 3e-06
3a0f_A763 Xyloglucanase; beta-propeller, hydrolase; 2.50A {G 6e-07
3a0f_A763 Xyloglucanase; beta-propeller, hydrolase; 2.50A {G 1e-05
3a0f_A 763 Xyloglucanase; beta-propeller, hydrolase; 2.50A {G 1e-05
3a0f_A 763 Xyloglucanase; beta-propeller, hydrolase; 2.50A {G 4e-04
3f6k_A 685 Sortilin; protein sorting receptor, 10-bladed beta 4e-05
3h6j_A 438 Neuraminidase, sialidase; six-bladed beta-propelle 4e-04
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} Length = 327 Back     alignment and structure
 Score =  143 bits (361), Expect = 3e-40
 Identities = 65/259 (25%), Positives = 111/259 (42%), Gaps = 34/259 (13%)

Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
           WE   + +D      +        N G+++G    +L T DGG++W+   +         
Sbjct: 68  WEPRTLVLDHSDYRFNSVSFQG--NEGWIVGEPPIMLHTTDGGQSWSQIPLDP----KLP 121

Query: 164 YRFNSISFKG-KEGWIVGKPAILLHTSDAGESWERIPLSSQ------------------- 203
                I   G     ++     +  T D+G++W+ +   +                    
Sbjct: 122 GSPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSS 181

Query: 204 -------LPGDMAFWQPHNRAVARRIQNMGWRADGGLWLLVRGGG-LFLSKGTGITEEFE 255
                         W+PHNR  +RR+ NMG+  DG LW++V GG   F            
Sbjct: 182 RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENWGEL 241

Query: 256 EVPVQSRGFGILDVGYRSQDEAWAAGGSGVLLKTTNGGKTWIREKAADNIAANLYSVKFI 315
             P++    G LD+ YR+ +E W AGG+G LL + +GG+TW ++     + +N Y + F 
Sbjct: 242 LSPLRRNSVGFLDLAYRTPNEVWLAGGAGALLCSQDGGQTWQQDVDVKKVPSNFYKILFF 301

Query: 316 NEKKGFVLGNDGVLLQYLG 334
           +  +GF+LG  G+LL+Y+ 
Sbjct: 302 SPDQGFILGQKGILLRYVT 320
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} Length = 327 Back     alignment and structure
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} Length = 327 Back     alignment and structure
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} Length = 327 Back     alignment and structure
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} Length = 394 Back     alignment and structure
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} Length = 394 Back     alignment and structure
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} Length = 394 Back     alignment and structure
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* Length = 789 Back     alignment and structure
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* Length = 789 Back     alignment and structure
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* Length = 789 Back     alignment and structure
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* Length = 789 Back     alignment and structure
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP} Length = 763 Back     alignment and structure
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP} Length = 763 Back     alignment and structure
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP} Length = 763 Back     alignment and structure
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP} Length = 763 Back     alignment and structure
>3f6k_A Sortilin; protein sorting receptor, 10-bladed beta-propeller, Cys-rich ssortilin, sortilin VPS10P-D, protein-peptide complex, DEVE protein; HET: NAG BMA PGE; 2.00A {Homo sapiens} Length = 685 Back     alignment and structure
>3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL, glycosidase, hydrolase, peptidoglycan-anchor, secreted; 1.60A {Pseudomonas aeruginosa} PDB: 2w38_A Length = 438 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query334
2xbg_A327 YCF48-like protein; photosynthesis, photosystem II 100.0
2xbg_A327 YCF48-like protein; photosynthesis, photosystem II 99.97
3b7f_A394 Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop 99.91
1sqj_A 789 OXG-RCBH, oligoxyloglucan reducing-END-specific ce 99.91
3b7f_A394 Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop 99.9
3a0f_A 763 Xyloglucanase; beta-propeller, hydrolase; 2.50A {G 99.89
2cn3_A 737 Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc 99.86
1sqj_A 789 OXG-RCBH, oligoxyloglucan reducing-END-specific ce 99.86
3a0f_A763 Xyloglucanase; beta-propeller, hydrolase; 2.50A {G 99.86
3f6k_A 685 Sortilin; protein sorting receptor, 10-bladed beta 99.85
2cn3_A 737 Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc 99.82
3f6k_A 685 Sortilin; protein sorting receptor, 10-bladed beta 99.6
1w8o_A 601 Bacterial sialidase; 3D-structure, glycosidase, hy 99.38
1so7_A382 Sialidase 2; neuraminidase, ganglioside, sugar-ind 99.17
2jkb_A686 Sialidase B; intramolecular trans-sialidase, lyase 99.15
3a72_A355 EXO-arabinanase; arabinase, glycosyl hydrolase, hy 99.03
2ydt_A367 EXO-1,5-alpha-L-arabinofuranobiosidase; hydrolase; 99.03
4fj6_A523 Glycoside hydrolase family 33, candidate sialidas; 99.02
2jkb_A686 Sialidase B; intramolecular trans-sialidase, lyase 98.96
2bf6_A449 Sialidase, EXO-alpha-sialidase; sialic acid, hydro 98.94
2sli_A679 Intramolecular trans-sialidase; hydrolase, neurami 98.91
2xzi_A386 KDNAse, extracellular sialidase/neuraminidase, put 98.82
2w20_A471 Sialidase A; secreted, cell WALL, hydrolase, glyco 98.82
2ydt_A367 EXO-1,5-alpha-L-arabinofuranobiosidase; hydrolase; 98.69
1w8o_A 601 Bacterial sialidase; 3D-structure, glycosidase, hy 98.68
3a72_A355 EXO-arabinanase; arabinase, glycosyl hydrolase, hy 98.65
1so7_A382 Sialidase 2; neuraminidase, ganglioside, sugar-ind 98.61
2sli_A679 Intramolecular trans-sialidase; hydrolase, neurami 98.57
3v9f_A 781 Two-component system sensor histidine kinase/RESP 98.39
2bf6_A449 Sialidase, EXO-alpha-sialidase; sialic acid, hydro 98.37
1w0p_A781 Sialidase; hydrolase, neuraminidase, lectin; HET: 98.33
3v9f_A 781 Two-component system sensor histidine kinase/RESP 98.3
4fj6_A523 Glycoside hydrolase family 33, candidate sialidas; 98.27
1w0p_A 781 Sialidase; hydrolase, neuraminidase, lectin; HET: 98.25
4a2l_A 795 BT_4663, two-component system sensor histidine kin 98.18
4a2l_A 795 BT_4663, two-component system sensor histidine kin 98.17
2xzi_A386 KDNAse, extracellular sialidase/neuraminidase, put 97.95
2w20_A471 Sialidase A; secreted, cell WALL, hydrolase, glyco 97.94
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 97.5
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 97.48
2z2n_A299 Virginiamycin B lyase; seven-bladed beta-propeller 97.46
3sil_A379 Sialidase; glycosidase, hydrolase; HET: PO4 GOL; 1 97.45
3hxj_A330 Pyrrolo-quinoline quinone; all beta protein. incom 97.45
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 97.4
1ms9_A 648 Trans-sialidase; trans-glycosylation, protein-acrb 97.35
2qc5_A300 Streptogramin B lactonase; beta propeller, lyase; 97.32
1rwi_B270 Serine/threonine-protein kinase PKND; beta propell 97.24
1tl2_A236 L10, protein (tachylectin-2); animal lectin, horse 97.19
3sil_A379 Sialidase; glycosidase, hydrolase; HET: PO4 GOL; 1 97.18
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 97.04
1ms9_A 648 Trans-sialidase; trans-glycosylation, protein-acrb 97.01
1tl2_A236 L10, protein (tachylectin-2); animal lectin, horse 97.0
3ott_A 758 Two-component system sensor histidine kinase; beta 96.97
3hxj_A330 Pyrrolo-quinoline quinone; all beta protein. incom 96.89
3ott_A 758 Two-component system sensor histidine kinase; beta 96.89
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 96.66
3jrp_A 379 Fusion protein of protein transport protein SEC13 96.54
3fm0_A 345 Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r 96.49
1q7f_A286 NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL 96.3
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 96.26
2dg1_A333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 96.26
1k8k_C372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 96.22
2ymu_A577 WD-40 repeat protein; unknown function, two domain 96.06
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 96.05
3h6j_A 438 Neuraminidase, sialidase; six-bladed beta-propelle 96.0
3e5z_A296 Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco 95.78
3jro_A 753 Fusion protein of protein transport protein SEC13 95.52
1k8k_C 372 P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- 95.45
4h5i_A365 Guanine nucleotide-exchange factor SEC12; copii ve 95.26
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 95.05
2dg1_A333 DRP35, lactonase; beta propeller, hydrolase; 1.72A 94.73
4g56_B 357 MGC81050 protein; protein arginine methyltransfera 94.56
3dr2_A305 Exported gluconolactonase; gluconolactonase SMP-30 94.43
2ymu_A577 WD-40 repeat protein; unknown function, two domain 94.37
1r5m_A 425 SIR4-interacting protein SIF2; transcription corep 94.16
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 94.02
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 93.68
3h6j_A 438 Neuraminidase, sialidase; six-bladed beta-propelle 93.46
1pjx_A314 Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries 93.31
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 93.18
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 93.12
1r5m_A 425 SIR4-interacting protein SIF2; transcription corep 93.05
1nr0_A611 Actin interacting protein 1; beta propeller, WD40 92.74
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 92.59
3f3f_A351 Nucleoporin SEH1; structural protein, protein comp 92.55
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 92.54
3f3f_A 351 Nucleoporin SEH1; structural protein, protein comp 92.47
1pjx_A314 Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries 92.43
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 92.39
4e54_B 435 DNA damage-binding protein 2; beta barrel, double 92.38
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 92.2
2j04_A 588 TAU60, YPL007P, hypothetical protein YPL007C; beta 92.01
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 91.76
3a9g_A 354 Putative uncharacterized protein; PQQ dependent de 91.67
4g56_B 357 MGC81050 protein; protein arginine methyltransfera 91.57
3ow8_A321 WD repeat-containing protein 61; structural genomi 91.51
3dwl_C377 Actin-related protein 2/3 complex subunit 1; prope 91.45
1nr0_A 611 Actin interacting protein 1; beta propeller, WD40 91.26
3dr2_A305 Exported gluconolactonase; gluconolactonase SMP-30 91.22
4asc_A315 Kelch repeat and BTB domain-containing protein 5; 90.82
2pm7_B297 Protein transport protein SEC13, protein transport 90.7
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 90.65
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 90.44
3g4e_A297 Regucalcin; six bladed beta-propeller, gluconolcat 90.06
3zwl_B 369 Eukaryotic translation initiation factor 3 subuni; 89.75
4h5i_A 365 Guanine nucleotide-exchange factor SEC12; copii ve 89.6
2aq5_A 402 Coronin-1A; WD40 repeat, 7-bladed beta-propeller, 89.48
2ghs_A326 AGR_C_1268P; regucalcin, structural genomics, join 89.44
1pgu_A 615 Actin interacting protein 1; WD repeat, seven-blad 89.41
2xn4_A302 Kelch-like protein 2; structural protein, cytoskel 89.26
2hes_X330 YDR267CP; beta-propeller, WD40 repeat, biosyntheti 89.21
3mkq_A 814 Coatomer beta'-subunit; beta-propeller, alpha-sole 89.1
4asc_A 315 Kelch repeat and BTB domain-containing protein 5; 89.0
2ism_A 352 Putative oxidoreductase; BL41XU spring-8, bladed b 88.32
3bg1_A316 Protein SEC13 homolog; NPC, transport, WD repeat, 88.25
3ei3_B 383 DNA damage-binding protein 2; UV-damage, DDB, nucl 88.12
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 87.9
3ow8_A321 WD repeat-containing protein 61; structural genomi 87.73
1cru_A 454 Protein (soluble quinoprotein glucose dehydrogena; 87.43
4gqb_B344 Methylosome protein 50; TIM barrel, beta-propeller 87.36
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 86.96
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 86.95
1zgk_A308 Kelch-like ECH-associated protein 1; beta-propelle 86.27
2woz_A318 Kelch repeat and BTB domain-containing protein 10; 85.66
3dw8_B 447 Serine/threonine-protein phosphatase 2A 55 kDa RE 84.99
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 84.93
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 84.92
2fp8_A322 Strictosidine synthase; six bladed beta propeller 84.59
3qqz_A255 Putative uncharacterized protein YJIK; MCSG, PSI-2 84.47
2uvk_A357 YJHT; unknown function, hypothetical protein, sial 83.77
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 83.72
3jro_A 753 Fusion protein of protein transport protein SEC13 83.29
2vpj_A301 Kelch-like protein 12; adaptor protein, WNT signal 83.24
4gqb_B 344 Methylosome protein 50; TIM barrel, beta-propeller 82.81
1got_B340 GT-beta; complex (GTP-binding/transducer), G prote 82.5
4ery_A312 WD repeat-containing protein 5; WD40, WIN motif, b 82.21
2xzm_R343 RACK1; ribosome, translation; 3.93A {Tetrahymena t 80.72
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} Back     alignment and structure
Probab=100.00  E-value=8.5e-31  Score=246.15  Aligned_cols=244  Identities=27%  Similarity=0.603  Sum_probs=182.2

Q ss_pred             ceeEEEecCCCccceEEecCCCCCcEEcccCC-CCCeeeEEEEEecCCCCEEEEEEcCCeEEEEcCCCcCeEeCcCCCCc
Q 036387           80 LSISLAATTGLYEQPAKSEEALSAWERVYIPV-DPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAE  158 (334)
Q Consensus        80 ~g~~~~~g~~~~g~i~~S~DgG~tW~~~~~p~-~~~~~l~~I~~~p~d~~~~~avG~~g~i~~S~DgG~TW~~~~~p~~~  158 (334)
                      .+..|++|+.  +.|+||+|+|++|+.+..+. .....+.+|+|.   ++++|++|+.|.|++|+|+|+||+.+..+...
T Consensus        46 ~~~~~~~G~~--g~i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~---~~~~~~~g~~g~i~~S~DgG~tW~~~~~~~~~  120 (327)
T 2xbg_A           46 RHHGWLVGVN--ATLMETRDGGQTWEPRTLVLDHSDYRFNSVSFQ---GNEGWIVGEPPIMLHTTDGGQSWSQIPLDPKL  120 (327)
T ss_dssp             SSCEEEEETT--TEEEEESSTTSSCEECCCCCSCCCCEEEEEEEE---TTEEEEEEETTEEEEESSTTSSCEECCCCTTC
T ss_pred             CCcEEEEcCC--CeEEEeCCCCCCCeECCCCCCCCCccEEEEEec---CCeEEEEECCCeEEEECCCCCCceECccccCC
Confidence            4556777765  78999999999999987543 223688999996   37899999999999999999999998754321


Q ss_pred             ccCcceeEEEEEEe-CCeEEEEEcCCEEEEEcCCCCCeEEeecCCC--------CC-CC-----------------cccc
Q 036387          159 EEDFNYRFNSISFK-GKEGWIVGKPAILLHTSDAGESWERIPLSSQ--------LP-GD-----------------MAFW  211 (334)
Q Consensus       159 ~~~~~~~~~~I~~~-~~~~~~vG~~g~i~~S~DgG~TW~~~~~~~~--------l~-g~-----------------~~~~  211 (334)
                      +.    .+..|.+. ++++|+++..+.||||+|+|+||+.+..+..        .+ +.                 ...|
T Consensus       121 ~~----~~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW  196 (327)
T 2xbg_A          121 PG----SPRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAW  196 (327)
T ss_dssp             SS----CEEEEEEEETTEEEEEETTCCEEEESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSC
T ss_pred             CC----CeEEEEEECCCCEEEEeCCccEEEEcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCce
Confidence            11    24567664 5889999988999999999999999875421        00 00                 0111


Q ss_pred             cccCccccceEeeeeEeecCCEEEEEcCCeEEEe-cCCCcceeeEecccc--CCCeeeEEEEeecCCeEEEEeCCCcEEE
Q 036387          212 QPHNRAVARRIQNMGWRADGGLWLLVRGGGLFLS-KGTGITEEFEEVPVQ--SRGFGILDVGYRSQDEAWAAGGSGVLLK  288 (334)
Q Consensus       212 ~~~~~~~~~~i~~~~~~~~g~~~~~~~~g~i~~S-~D~G~tW~w~~~~~~--~~~~~~~~v~~~~~~~~~~~G~~G~i~~  288 (334)
                      ..........+..+.+.+++.+|+++..|.+++| .|+|++|  +++..+  .....++++.+.+++.+|++|..|.+|+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G~tW--~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~~  274 (327)
T 2xbg_A          197 EPHNRTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNSENW--GELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALLC  274 (327)
T ss_dssp             EEEECCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEEEEE--CCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEEE
T ss_pred             eECCCCCCCccceeEECCCCCEEEEeCCceEEEecCCCCCee--EeccCCcccCCcceEEEEecCCCEEEEEeCCCeEEE
Confidence            1111111223445556677889999989999999 5889976  554433  1223578888887889999999999999


Q ss_pred             EcCCCcCcEEcccCCCcccceeEEEEeeCCeEEEEeCCeeEEEEcC
Q 036387          289 TTNGGKTWIREKAADNIAANLYSVKFINEKKGFVLGNDGVLLQYLG  334 (334)
Q Consensus       289 S~DgG~tW~~~~~~~~~~~~l~~i~~~~~~~~~a~G~~G~il~s~~  334 (334)
                      |.|+|+||+.+......+..+++|.+.+++++|++|++|.|+++++
T Consensus       275 S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          275 SQDGGQTWQQDVDVKKVPSNFYKILFFSPDQGFILGQKGILLRYVT  320 (327)
T ss_dssp             ESSTTSSCEECGGGTTSSSCCCEEEEEETTEEEEECSTTEEEEECC
T ss_pred             eCCCCcccEEcCccCCCCCCeEEEEEECCCceEEEcCCceEEEEcC
Confidence            9999999999886323346899999988899999999999999875
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} Back     alignment and structure
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} Back     alignment and structure
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* Back     alignment and structure
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} Back     alignment and structure
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP} Back     alignment and structure
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A* Back     alignment and structure
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP} Back     alignment and structure
>3f6k_A Sortilin; protein sorting receptor, 10-bladed beta-propeller, Cys-rich ssortilin, sortilin VPS10P-D, protein-peptide complex, DEVE protein; HET: NAG BMA PGE; 2.00A {Homo sapiens} Back     alignment and structure
>3f6k_A Sortilin; protein sorting receptor, 10-bladed beta-propeller, Cys-rich ssortilin, sortilin VPS10P-D, protein-peptide complex, DEVE protein; HET: NAG BMA PGE; 2.00A {Homo sapiens} Back     alignment and structure
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A* Back     alignment and structure
>1so7_A Sialidase 2; neuraminidase, ganglioside, sugar-induced form; 1.49A {Homo sapiens} SCOP: b.68.1.1 PDB: 1snt_A 1vcu_A* 2f0z_A* 2f10_A* 2f11_A* 2f12_A* 2f13_A* 2f28_A 2f29_A* 2f24_A 2f25_A* 2f26_A 2f27_A* Back     alignment and structure
>2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase, neuraminidase; HET: SKD; 1.54A {Streptococcus pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A* Back     alignment and structure
>3a72_A EXO-arabinanase; arabinase, glycosyl hydrolase, hydrolase; HET: AHR; 1.04A {Penicillium chrysogenum} PDB: 3a71_A* Back     alignment and structure
>2ydt_A EXO-1,5-alpha-L-arabinofuranobiosidase; hydrolase; 1.60A {Gibberella zeae} PDB: 2w5n_A* 2w5o_A* 2ydp_A Back     alignment and structure
>4fj6_A Glycoside hydrolase family 33, candidate sialidas; bacterial neuraminidase repeat; HET: MSE GOL; 1.90A {Parabacteroides distasonis} Back     alignment and structure
>2jkb_A Sialidase B; intramolecular trans-sialidase, lyase, glycosidase, neuraminidase; HET: SKD; 1.54A {Streptococcus pneumoniae} PDB: 2vw2_A* 2vw1_A* 2vw0_A* Back     alignment and structure
>2bf6_A Sialidase, EXO-alpha-sialidase; sialic acid, hydrolase; HET: SIA; 0.97A {Clostridium perfringens} PDB: 2vk5_A 2vk6_A* 2vk7_A* Back     alignment and structure
>2sli_A Intramolecular trans-sialidase; hydrolase, neuraminidase; HET: SKD; 1.80A {Macrobdella decora} SCOP: b.29.1.9 b.68.1.1 PDB: 1sll_A 1sli_A* 3sli_A* 4sli_A* Back     alignment and structure
>2xzi_A KDNAse, extracellular sialidase/neuraminidase, putative; hydrolase; HET: KDM; 1.45A {Aspergillus fumigatus} PDB: 2xcy_A* 2xzj_A* 2xzk_A* Back     alignment and structure
>2w20_A Sialidase A; secreted, cell WALL, hydrolase, glycosidase, neuraminidase, peptidoglycan-anchor; HET: MES; 1.49A {Streptococcus pneumoniae} PDB: 2vvz_A* 3h71_A 3h72_A* 3h73_A* 2ya8_A* 2ya5_A* 2ya6_A* 2ya7_A* 2ya4_A* Back     alignment and structure
>2ydt_A EXO-1,5-alpha-L-arabinofuranobiosidase; hydrolase; 1.60A {Gibberella zeae} PDB: 2w5n_A* 2w5o_A* 2ydp_A Back     alignment and structure
>1w8o_A Bacterial sialidase; 3D-structure, glycosidase, hydrolase, beta- propeller; HET: LBT CIT; 1.70A {Micromonospora viridifaciens} SCOP: b.1.18.2 b.18.1.1 b.68.1.1 PDB: 1w8n_A* 1eut_A 1euu_A* 1wcq_A* 2bzd_A* 2ber_A* 1eur_A 1eus_A* Back     alignment and structure
>3a72_A EXO-arabinanase; arabinase, glycosyl hydrolase, hydrolase; HET: AHR; 1.04A {Penicillium chrysogenum} PDB: 3a71_A* Back     alignment and structure
>1so7_A Sialidase 2; neuraminidase, ganglioside, sugar-induced form; 1.49A {Homo sapiens} SCOP: b.68.1.1 PDB: 1snt_A 1vcu_A* 2f0z_A* 2f10_A* 2f11_A* 2f12_A* 2f13_A* 2f28_A 2f29_A* 2f24_A 2f25_A* 2f26_A 2f27_A* Back     alignment and structure
>2sli_A Intramolecular trans-sialidase; hydrolase, neuraminidase; HET: SKD; 1.80A {Macrobdella decora} SCOP: b.29.1.9 b.68.1.1 PDB: 1sll_A 1sli_A* 3sli_A* 4sli_A* Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2bf6_A Sialidase, EXO-alpha-sialidase; sialic acid, hydrolase; HET: SIA; 0.97A {Clostridium perfringens} PDB: 2vk5_A 2vk6_A* 2vk7_A* Back     alignment and structure
>1w0p_A Sialidase; hydrolase, neuraminidase, lectin; HET: SIA; 1.6A {Vibrio cholerae} SCOP: b.29.1.8 b.29.1.8 b.68.1.1 PDB: 1w0o_A* 1kit_A 2w68_A* Back     alignment and structure
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4fj6_A Glycoside hydrolase family 33, candidate sialidas; bacterial neuraminidase repeat; HET: MSE GOL; 1.90A {Parabacteroides distasonis} Back     alignment and structure
>1w0p_A Sialidase; hydrolase, neuraminidase, lectin; HET: SIA; 1.6A {Vibrio cholerae} SCOP: b.29.1.8 b.29.1.8 b.68.1.1 PDB: 1w0o_A* 1kit_A 2w68_A* Back     alignment and structure
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* Back     alignment and structure
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* Back     alignment and structure
>2xzi_A KDNAse, extracellular sialidase/neuraminidase, putative; hydrolase; HET: KDM; 1.45A {Aspergillus fumigatus} PDB: 2xcy_A* 2xzj_A* 2xzk_A* Back     alignment and structure
>2w20_A Sialidase A; secreted, cell WALL, hydrolase, glycosidase, neuraminidase, peptidoglycan-anchor; HET: MES; 1.49A {Streptococcus pneumoniae} PDB: 2vvz_A* 3h71_A 3h72_A* 3h73_A* 2ya8_A* 2ya5_A* 2ya6_A* 2ya7_A* 2ya4_A* Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Back     alignment and structure
>3sil_A Sialidase; glycosidase, hydrolase; HET: PO4 GOL; 1.05A {Salmonella typhimurium} SCOP: b.68.1.1 PDB: 1dim_A* 1dil_A* 2sil_A 2sim_A* Back     alignment and structure
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>1ms9_A Trans-sialidase; trans-glycosylation, protein-acrbohydrate interac beta-propeller, hydrolase; HET: LAT; 1.58A {Trypanosoma cruzi} SCOP: b.29.1.15 b.68.1.1 PDB: 1ms0_A* 1mr5_A* 1ms1_A 1ms4_A 1ms8_A* 1ms3_A* 2ah2_A* 3b69_A* 3opz_A 3pjq_A* 1s0i_A* 1s0j_A* 1ms5_A 1wcs_A 2ags_A* 2a75_A* 2fhr_A* 1n1t_A* 1n1s_A* 1n1v_A* ... Back     alignment and structure
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Back     alignment and structure
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Back     alignment and structure
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* Back     alignment and structure
>3sil_A Sialidase; glycosidase, hydrolase; HET: PO4 GOL; 1.05A {Salmonella typhimurium} SCOP: b.68.1.1 PDB: 1dim_A* 1dil_A* 2sil_A 2sim_A* Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>1ms9_A Trans-sialidase; trans-glycosylation, protein-acrbohydrate interac beta-propeller, hydrolase; HET: LAT; 1.58A {Trypanosoma cruzi} SCOP: b.29.1.15 b.68.1.1 PDB: 1ms0_A* 1mr5_A* 1ms1_A 1ms4_A 1ms8_A* 1ms3_A* 2ah2_A* 3b69_A* 3opz_A 3pjq_A* 1s0i_A* 1s0j_A* 1ms5_A 1wcs_A 2ags_A* 2a75_A* 2fhr_A* 1n1t_A* 1n1s_A* 1n1v_A* ... Back     alignment and structure
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* Back     alignment and structure
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A Back     alignment and structure
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} Back     alignment and structure
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} Back     alignment and structure
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL, glycosidase, hydrolase, peptidoglycan-anchor, secreted; 1.60A {Pseudomonas aeruginosa} PDB: 2w38_A Back     alignment and structure
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Back     alignment and structure
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>3h6j_A Neuraminidase, sialidase; six-bladed beta-propeller, cell WALL, glycosidase, hydrolase, peptidoglycan-anchor, secreted; 1.60A {Pseudomonas aeruginosa} PDB: 2w38_A Back     alignment and structure
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A Back     alignment and structure
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A Back     alignment and structure
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A Back     alignment and structure
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A Back     alignment and structure
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Back     alignment and structure
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A Back     alignment and structure
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Back     alignment and structure
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} Back     alignment and structure
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A Back     alignment and structure
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} Back     alignment and structure
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Back     alignment and structure
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Back     alignment and structure
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Back     alignment and structure
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} Back     alignment and structure
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} Back     alignment and structure
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Back     alignment and structure
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} Back     alignment and structure
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* Back     alignment and structure
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... Back     alignment and structure
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 334
d2ebsa1 427 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-s 0.001
>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} Length = 427 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 27/206 (13%), Positives = 52/206 (25%), Gaps = 20/206 (9%)

Query: 104 WERVYIPVDPGVVLLDIAFVPDDLNHGFLLGTRQTLLETKDGGKTWAPRSIPSAEEEDFN 163
           ++ V I     +    I   P   +  +             G   W P +     ++   
Sbjct: 3   FKNVAIGGGGYIT--GIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNI 60

Query: 164 YRFNSISFK---------GKEGWIVGKPAILLHTSDAGESWERIPLSSQLPG-DMAFWQP 213
               SI+            +  ++  + A    + D G+S+        +   DM     
Sbjct: 61  MGTESIALDPNNPDRLYLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNG 120

Query: 214 HNRAVARRIQNMGWRADGGLWLLVRGGGLFLSKGTGITEEFEEVPVQSRGFGILDVGYRS 273
              AV     N  W       +               T         + G G   V +  
Sbjct: 121 ERLAVNPFNSNEVWMGTRTEGIWKSSDR-----AKTWTNVTSIPDAFTNGIGYTSVIFDP 175

Query: 274 QDEAWAAGGSGV---LLKTTNGGKTW 296
           +        +     +  T +GG +W
Sbjct: 176 ERNGTIYASATAPQGMYVTHDGGVSW 201

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query334
d2ebsa1427 Oligoxyloglucan reducing end-specific cellobiohydr 99.87
d2ebsa1 427 Oligoxyloglucan reducing end-specific cellobiohydr 99.87
d2ebsa2356 Oligoxyloglucan reducing end-specific cellobiohydr 99.85
d2ebsa2356 Oligoxyloglucan reducing end-specific cellobiohydr 99.75
d2slia2483 Leech intramolecular trans-sialidase, C-terminal d 99.15
d1w0pa3364 Vibrio cholerae sialidase {Vibrio cholerae [TaxId: 98.97
d1w8oa3356 Micromonospora sialidase, N-terminal domain {Micro 98.84
d2slia2483 Leech intramolecular trans-sialidase, C-terminal d 98.59
d2ah2a2399 Trypanosoma sialidase {Parasitic flagellate protoz 98.56
d3sila_379 Salmonella sialidase {Salmonella typhimurium, stra 98.27
d1so7a_374 Sialidase 2 (Neu2) {Human (Homo sapiens) [TaxId: 9 98.06
d1w8oa3356 Micromonospora sialidase, N-terminal domain {Micro 98.03
d2ah2a2399 Trypanosoma sialidase {Parasitic flagellate protoz 98.0
d3sila_379 Salmonella sialidase {Salmonella typhimurium, stra 97.77
d1w0pa3364 Vibrio cholerae sialidase {Vibrio cholerae [TaxId: 97.64
d1so7a_374 Sialidase 2 (Neu2) {Human (Homo sapiens) [TaxId: 9 97.59
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 97.47
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 96.94
d1k8kc_ 371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 96.26
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 96.26
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 95.44
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 95.21
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 94.69
d2dg1a1 319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 94.45
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 93.85
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 93.76
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 93.2
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 92.43
d1pjxa_314 Diisopropylfluorophosphatase (phosphotriesterase, 91.98
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 91.63
d1tbga_340 beta1-subunit of the signal-transducing G protein 91.56
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 91.35
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 91.26
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 89.73
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 89.14
d1pjxa_314 Diisopropylfluorophosphatase (phosphotriesterase, 88.08
d1k32a3 360 Tricorn protease domain 2 {Archaeon Thermoplasma a 86.12
d1tl2a_235 Tachylectin-2 {Japanese horseshoe crab (Tachypleus 84.19
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 83.49
d1k32a3 360 Tricorn protease domain 2 {Archaeon Thermoplasma a 80.54
>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=99.87  E-value=8.7e-21  Score=180.95  Aligned_cols=228  Identities=11%  Similarity=0.162  Sum_probs=142.9

Q ss_pred             cceEEecCCCCCcEEcccCCCC----CeeeEEEEEecCCCCEEEEEE------cCCeEEEEcCCCcCeEeCcCCCCccc-
Q 036387           92 EQPAKSEEALSAWERVYIPVDP----GVVLLDIAFVPDDLNHGFLLG------TRQTLLETKDGGKTWAPRSIPSAEEE-  160 (334)
Q Consensus        92 g~i~~S~DgG~tW~~~~~p~~~----~~~l~~I~~~p~d~~~~~avG------~~g~i~~S~DgG~TW~~~~~p~~~~~-  160 (334)
                      ++|+||+|+|++|+++......    ...+.+|++.|.||+++|++.      ..+.|++|+|+|+||+++..+..... 
T Consensus        34 gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~~iavdp~np~~vy~~tg~~~~~~~~gi~~S~DgG~TW~~~~~~~~~~~~  113 (427)
T d2ebsa1          34 GGAYRWDAGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWAAFYVSEDRGQSFTIYESPFPMGAN  113 (427)
T ss_dssp             SCEEEEETTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCCEEEEESSTTSEEEEEECSSCCCTT
T ss_pred             CCEEEEECCCCceEECCCCCCCCCcccccEeEEEECCCCCCEEEEEeccccCCcCccEEEeCCCCccceeecCCcccCcc
Confidence            5699999999999988642211    134678999999999998763      23569999999999998765432110 


Q ss_pred             -CcceeEEEEEEeC---CeEEEEEcCCEEEEEcCCCCCeEEeecCCCCCCCcccccccCccccceEeeeeEee--cCCEE
Q 036387          161 -DFNYRFNSISFKG---KEGWIVGKPAILLHTSDAGESWERIPLSSQLPGDMAFWQPHNRAVARRIQNMGWRA--DGGLW  234 (334)
Q Consensus       161 -~~~~~~~~I~~~~---~~~~~vG~~g~i~~S~DgG~TW~~~~~~~~l~g~~~~~~~~~~~~~~~i~~~~~~~--~g~~~  234 (334)
                       ........|.+++   +.+|+....++||||+|+|+||+++...........           .+..+.+.+  .+.+|
T Consensus       114 ~~~~~~~~~i~v~P~~~~~v~~~~~~~gl~~S~D~G~tW~~~~~~~~~~~~~~-----------~~~~i~~~p~~~~~~y  182 (427)
T d2ebsa1         114 DMGRNNGERLAVNPFNSNEVWMGTRTEGIWKSSDRAKTWTNVTSIPDAFTNGI-----------GYTSVIFDPERNGTIY  182 (427)
T ss_dssp             STTTTSCCCEEECTTCTTCEEEECSSSCEEEESSTTSSCEECTTSSCCCCSSS-----------CEEEEEECTTSTTCEE
T ss_pred             ccCccceeEEEECCCccCcccccccccceeeecCCCceeeecccCcccccCCc-----------cceEEEecccccceee
Confidence             0001234566663   678887777889999999999999864321111100           122344433  34577


Q ss_pred             EEEc-CCeEEEecCCCcceeeEecc-cc------------C----C-CeeeEEEEeecCCeEEEE---------eCCCcE
Q 036387          235 LLVR-GGGLFLSKGTGITEEFEEVP-VQ------------S----R-GFGILDVGYRSQDEAWAA---------GGSGVL  286 (334)
Q Consensus       235 ~~~~-~g~i~~S~D~G~tW~w~~~~-~~------------~----~-~~~~~~v~~~~~~~~~~~---------G~~G~i  286 (334)
                      +.+. .++||||.|+|+||  +++. .+            .    . ........ ..++.++++         +..|.+
T Consensus       183 ~~~~~~~giy~S~DgG~TW--~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~g~v  259 (427)
T d2ebsa1         183 ASATAPQGMYVTHDGGVSW--EPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVA-LTPNFLYVTYADYPGPWGVTFGEV  259 (427)
T ss_dssp             EEESSTTCEEEESSTTSSC--EECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEE-ECSSEEEEEEESSCCSSCCCCEEE
T ss_pred             eeeeecccceeccCCCCCc--eECcCCCcccccceeeecCCCCcceeeeccceee-cCCCceEEEEeccCCccccCCCce
Confidence            7654 46899999999987  4432 11            0    0 01112222 245666654         234679


Q ss_pred             EEEcCCCcCcEEcccCCC------------cccceeEEEEe--eCCeEEEEeCC-------eeEEEEc
Q 036387          287 LKTTNGGKTWIREKAADN------------IAANLYSVKFI--NEKKGFVLGND-------GVLLQYL  333 (334)
Q Consensus       287 ~~S~DgG~tW~~~~~~~~------------~~~~l~~i~~~--~~~~~~a~G~~-------G~il~s~  333 (334)
                      |+|.|+|++|+.+.....            ....+..|+..  +.+++|+++.+       +.|++|+
T Consensus       260 ~~s~d~g~~W~~i~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~~~i~~~~~~~~~g~~~~~i~~S~  327 (427)
T d2ebsa1         260 WRQNRTSGAWDDITPRVGNSSPAPYNNQTFPAGGFCGLSVDATNPNRLVVITLDRDPGPALDSIYLST  327 (427)
T ss_dssp             EEEETTTCCEEECCCCTTTEESCCCSSCCSCCCEEEEEEECTTCTTCEEEEEECCCSCSSCCCEEEES
T ss_pred             EeecccccceeeccCcccccccccccccccccccccccccCCCCCcEEEEEEcccccccCCccEEECC
Confidence            999999999998864211            11224445554  46788887643       5677764
>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} Back     information, alignment and structure
>d2ebsa2 b.69.13.1 (A:431-786) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} Back     information, alignment and structure
>d2ebsa2 b.69.13.1 (A:431-786) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]} Back     information, alignment and structure
>d2slia2 b.68.1.1 (A:277-759) Leech intramolecular trans-sialidase, C-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]} Back     information, alignment and structure
>d1w0pa3 b.68.1.1 (A:217-346,A:544-777) Vibrio cholerae sialidase {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1w8oa3 b.68.1.1 (A:47-402) Micromonospora sialidase, N-terminal domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d2slia2 b.68.1.1 (A:277-759) Leech intramolecular trans-sialidase, C-terminal domain {North american leech (Macrobdella decora) [TaxId: 6405]} Back     information, alignment and structure
>d2ah2a2 b.68.1.1 (A:1-399) Trypanosoma sialidase {Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]} Back     information, alignment and structure
>d3sila_ b.68.1.1 (A:) Salmonella sialidase {Salmonella typhimurium, strain lt2 [TaxId: 90371]} Back     information, alignment and structure
>d1so7a_ b.68.1.1 (A:) Sialidase 2 (Neu2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w8oa3 b.68.1.1 (A:47-402) Micromonospora sialidase, N-terminal domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d2ah2a2 b.68.1.1 (A:1-399) Trypanosoma sialidase {Parasitic flagellate protozoan (Trypanosoma cruzi) [TaxId: 5693]} Back     information, alignment and structure
>d3sila_ b.68.1.1 (A:) Salmonella sialidase {Salmonella typhimurium, strain lt2 [TaxId: 90371]} Back     information, alignment and structure
>d1w0pa3 b.68.1.1 (A:217-346,A:544-777) Vibrio cholerae sialidase {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1so7a_ b.68.1.1 (A:) Sialidase 2 (Neu2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure