Citrus Sinensis ID: 036464

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220------
Protein Sequence
MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAESCLTCLRDSGSRKAVAAAAAQLGFVLFG
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHccHHcHHHHHHcccccccccccHHHHHHHHHHHcccccccccHHHHHHHcccccccEEEEEEcccccccHHHHHHHHHHccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHcccccEEEEEEHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccccccHHHHHHHHHcEEEEEcc
Secondary Structure Prediction (SSPRO)
ccHHHccccHHHHHHHHHcccccHHHHHHccHHHHHHHcHHHHHHHHHHHHHHHEHccccHHHHHHHccccccccEHHEHccccccccEEEEEEEEEEEccccccccccEEEEEEccccccHHHHHHHHHHHHHccccccEEEEEEEHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcEEEEcccccHcccccccccccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mevsklpisatqRGKLISAGYTSLSSicsasssdisrgTQTAWDMLQEEQESLARITTSCadldnilgggigcrevteiggvpgigktqLGIQLAVNVqipvefgglggkaIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAESCLTCLRDSGSRKAVAAAAAQLGFVLFG
Flexible Loop (DISEMBL)
mevsklpisatqrgKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAESCLTCLRDSGSRKAVAAAAAQLGFVLFG
Low Complexity Region (SEG)
MEVSKLPISATQRGKLISAGYTslssicsasssdisRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAESCLTCLRDSGSRKavaaaaaQLGFVLFG
Disordered region (IsUnstruct)
***************************************************SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAESCLTCLRDSGSRKAVAAAAAQLGFVLF*
Disordered Region (DISOPRED)
MEVSKLPISATQRGKLISAGYTSLSSICS*************************RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFR**************GIALKLMNLAKKFSLALLEPNLATTANLA***********SRKAVAAAAAQLGFVLFG
Disordered Region (DISEMBL)
MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAESCLTCLRDSGSRKAVAAAAAQLGFVLFG
Disordered Region (DISPRO)
MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAESCLTCLRDSGSRKAVAAAAAQLGFVLFG
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAESCLTCLRDSGSRKAVAAAAAQLGFVLFG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	226	2.2.26 [Sep-21-2011]
Q8GXF0	363	DNA repair protein RAD51	yes	no	0.849	0.528	0.511	5e-59
Q924H5	366	DNA repair protein RAD51	yes	no	0.849	0.524	0.318	3e-29
Q8R2J9	366	DNA repair protein RAD51	yes	no	0.849	0.524	0.322	1e-28
O43502	376	DNA repair protein RAD51	yes	no	0.823	0.494	0.313	2e-27
Q54PJ7	381	DNA repair protein RAD51	yes	no	0.712	0.422	0.334	2e-24
Q975Y1	324	DNA repair and recombinat	yes	no	0.774	0.540	0.349	9e-24
A4YCN4	324	DNA repair and recombinat	yes	no	0.778	0.543	0.334	4e-22
P0CW91	319	DNA repair and recombinat	yes	no	0.809	0.573	0.315	7e-22
C3N7M8	324	DNA repair and recombinat	yes	no	0.827	0.577	0.326	8e-22
C3NFU5	324	DNA repair and recombinat	yes	no	0.827	0.577	0.326	8e-22

>sp|Q8GXF0|RA51C_ARATH DNA repair protein RAD51 homolog 3 OS=Arabidopsis thaliana GN=RAD51C PE=1 SV=2

 Score =  227 bits (579), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 139/272 (51%), Positives = 160/272 (58%), Gaps = 80/272 (29%)

Query: 1   MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------- 37
           ME  +LP+S + RGKLISAGYT LSSI S SSSD++R                       
Sbjct: 22  MEAWRLPLSPSIRGKLISAGYTCLSSIASVSSSDLARDANITEEEAFEILKLANQSCCNG 81

Query: 38  ------GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
                 G + AWDML EE ESL RITTSC+DLDNILGGGI CR+VTEIGGVPGIGKTQ+G
Sbjct: 82  SRSLINGAKNAWDMLHEE-ESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIG 140

Query: 92  IQLAVNVQIPVEFGGLGGKAIYIGKCLGF------------------------------- 120
           IQL+VNVQIP E GGLGGKAIYI     F                               
Sbjct: 141 IQLSVNVQIPRECGGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQ 200

Query: 121 -------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA 161
                              YTEQ A++N+L+KF+SE+KDVKVVI+DSI FHFR  + DLA
Sbjct: 201 VQMKPEDILENIFYFRVCSYTEQIALVNHLEKFISENKDVKVVIVDSITFHFRQDYDDLA 260

Query: 162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
            RTRVLS +ALK M LAKKFSLA++  N  TT
Sbjct: 261 QRTRVLSEMALKFMKLAKKFSLAVVLLNQVTT 292

Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents.
Arabidopsis thaliana (taxid: 3702)

>sp|Q924H5|RA51C_MOUSE DNA repair protein RAD51 homolog 3 OS=Mus musculus GN=Rad51c PE=2 SV=1

 Score =  128 bits (322), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 88/276 (31%), Positives = 131/276 (47%), Gaps = 84/276 (30%)

Query: 2   EVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ---------- 47
           E+   P+S   RGKL++AG+ +   +     S++S+      + A + LQ          
Sbjct: 4   ELVGYPLSPAVRGKLVAAGFQTAEDVLEVKPSELSKEVGISKEEALETLQILRRECLTNK 63

Query: 48  -------------------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
                              E++ +   I T C+ LDNILGGGI   + TE+ GVPG+GKT
Sbjct: 64  PRCAGTSVANEKCTALELLEQEHTQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKT 123

Query: 89  QLGIQLAVNVQIPVEFGGLGGKAIYIGK---------------CL-------GFYTEQS- 125
           QL +QLAV+VQIP  FGG+ G+A++I                 C+       G +TE+  
Sbjct: 124 QLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVSLATACIQHLHLIAGTHTEEEH 183

Query: 126 ----------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGF 157
                                       A +  L  F+S+H  V++VIID IAF FRH  
Sbjct: 184 QKALKDFTLENILSHIYYFRCHDYTELLAQVYLLPDFLSDHPKVQLVIIDGIAFPFRHDL 243

Query: 158 VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
            DL+LRTR+L+G+A ++++LA    LA++  N  TT
Sbjct: 244 EDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 279

Essential for the homologous recombination (HR) pathway of DNA repair. Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents. The RAD51B-RAD51C dimer exhibits single-stranded DNA-dependent ATPase activity. The BCDX2 complex binds single-stranded DNA, single-stranded gaps in duplex DNA and specifically to nicks in duplex DNA. Participates in branch migration and Holliday junction resolution and thus is important for processing HR intermediates late in the DNA repair process. Also has an early function in DNA repair in facilitating phosphorylation of the checkpoint kinase CHEK2 and thereby transduction of the damage signal, leading to cell cycle arrest and HR activation. Protects RAD51 from ubiquitin-mediated degradation that is enhanced following DNA damage. Plays a role in regulating mitochondrial DNA copy number under conditions of oxidative stress in the presence of RAD51 and XRCC3. Contributes to DNA cross-link resistance, sister chromatid cohesion and genomic stability. Involved in maintaining centrosome number in mitosis (By similarity). Essential for embryonic development and haploinsufficiency causes increased DNA damage sensitivity and genomic instability.

Mus musculus (taxid: 10090)

>sp|Q8R2J9|RA51C_CRIGR DNA repair protein RAD51 homolog 3 OS=Cricetulus griseus GN=RAD51C PE=2 SV=1

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/276 (32%), Positives = 129/276 (46%), Gaps = 84/276 (30%)

Query: 2   EVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ---------- 47
           E+   P+S T R KL++AG+ +   +     S++S+      + A + LQ          
Sbjct: 4   ELVSFPLSPTVRVKLVAAGFQTAEDVLGVKPSELSKEVGISKEEALETLQIVRRESLTDK 63

Query: 48  -------------------EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKT 88
                              E++ +   I T C+ LDNILGGGI   + TE+ GVPG+GKT
Sbjct: 64  PRCAGASVAGKKYTALELLEQEHTQGFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKT 123

Query: 89  QLGIQLAVNVQIPVEFGGLGGKAIYI---------------GKCL--------------- 118
           QL +QLAV+VQIP  FGG+ G+A++I                 C+               
Sbjct: 124 QLCMQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVTLANACIQHLHLIAGTHKDEEH 183

Query: 119 -----GF----------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGF 157
                GF                YTE  A +  L  F+S H  V++VIID IA  FRH  
Sbjct: 184 QKALEGFTLENILSHIYYFRCHDYTELLAQVYLLPDFLSNHSKVQLVIIDGIALPFRHDL 243

Query: 158 VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
            DL+LRTR+L+G+A ++++LA    LA++  N  TT
Sbjct: 244 DDLSLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 279

Essential for the homologous recombination (HR) pathway of DNA repair. Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents. The RAD51B-RAD51C dimer exhibits single-stranded DNA-dependent ATPase activity. The BCDX2 complex binds single-stranded DNA, single-stranded gaps in duplex DNA and specifically to nicks in duplex DNA. Participates in branch migration and Holliday junction resolution and thus is important for processing HR intermediates late in the DNA repair process. Also has an early function in DNA repair in facilitating phosphorylation of the checkpoint kinase CHEK2 and thereby transduction of the damage signal, leading to cell cycle arrest and HR activation. Protects RAD51 from ubiquitin-mediated degradation that is enhanced following DNA damage. Plays a role in regulating mitochondrial DNA copy number under conditions of oxidative stress in the presence of RAD51 and XRCC3 (By similarity). Essential for embryonic development and haploinsufficiency causes increased DNA damage sensitivity and genomic instability. Contributes to DNA cross-link resistance, sister chromatid cohesion and genomic stability. Involved in maintaining centrosome number in mitosis.

Cricetulus griseus (taxid: 10029)

>sp|O43502|RA51C_HUMAN DNA repair protein RAD51 homolog 3 OS=Homo sapiens GN=RAD51C PE=1 SV=1

 Score =  122 bits (305), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 127/274 (46%), Gaps = 88/274 (32%)

Query: 6   LPISATQRGKLISAGYTSLSSICSASSSDISR---------------------------- 37
            P+S   R KL+SAG+ +   +     S++S+                            
Sbjct: 17  FPLSPAVRVKLVSAGFQTAEELLEVKPSELSKEVGISKAEALETLQIIRRECLTNKPRYA 76

Query: 38  GTQ------TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
           GT       TA ++L++E  +   I T C+ LD+ILGGG+   + TEI G PG+GKTQL 
Sbjct: 77  GTSESHKKCTALELLEQEH-TQGFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLC 135

Query: 92  IQLAVNVQIPVEFGGLGGKAIYIG------------------------------------ 115
           +QLAV+VQIP  FGG+ G+A++I                                     
Sbjct: 136 MQLAVDVQIPECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHKGEEHRKA 195

Query: 116 ----------------KCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVD 159
                           +C  + TE  A +  L  F+SEH  V++VI+D IAF FRH   D
Sbjct: 196 LEDFTLDNILSHIYYFRCRDY-TELLAQVYLLPDFLSEHSKVRLVIVDGIAFPFRHDLDD 254

Query: 160 LALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
           L+LRTR+L+G+A ++++LA    LA++  N  TT
Sbjct: 255 LSLRTRLLNGLAQQMISLANNHRLAVILTNQMTT 288

Essential for the homologous recombination (HR) pathway of DNA repair. Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents. The RAD51B-RAD51C dimer exhibits single-stranded DNA-dependent ATPase activity. The BCDX2 complex binds single-stranded DNA, single-stranded gaps in duplex DNA and specifically to nicks in duplex DNA. Participates in branch migration and Holliday junction resolution and thus is important for processing HR intermediates late in the DNA repair process. Also has an early function in DNA repair in facilitating phosphorylation of the checkpoint kinase CHEK2 and thereby transduction of the damage signal, leading to cell cycle arrest and HR activation. Protects RAD51 from ubiquitin-mediated degradation that is enhanced following DNA damage. Plays a role in regulating mitochondrial DNA copy number under conditions of oxidative stress in the presence of RAD51 and XRCC3. Contributes to DNA cross-link resistance, sister chromatid cohesion and genomic stability. Involved in maintaining centrosome number in mitosis.

Homo sapiens (taxid: 9606)

>sp|Q54PJ7|RA51C_DICDI DNA repair protein RAD51 homolog 3 OS=Dictyostelium discoideum GN=rad51c PE=3 SV=1

 Score =  112 bits (281), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 107/212 (50%), Gaps = 51/212 (24%)

Query: 41  TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
           +A D+L + ++    I T C+++D +L GG   +++TEI GVPGIGKT +  QL VN  I
Sbjct: 49  SALDLLIQGRDGNNNIITFCSEIDQMLNGGTPLKKITEICGVPGIGKTNMAFQLLVNTSI 108

Query: 101 PVEFGGLGGKAIYIG---------------------KC---------------------- 117
           P + GG+ GKAIYI                      +C                      
Sbjct: 109 PFDLGGVQGKAIYIDTEGSYSCQRVREMATHLVNHLECVLLKNPMTQTTYIPTVETVLNS 168

Query: 118 -----LGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIAL 172
                +  Y E  ++I+ L  F+ ++KDVK++++DSI + FR  F D+ LRTR L  +A 
Sbjct: 169 IYYYRVYHYIEIISLIHQLPLFLEKNKDVKLIVVDSITYPFRCDFKDMGLRTRSLLSLAQ 228

Query: 173 KLMNLAKKFSLALLEPNLATT---ANLAESCL 201
            LMN+A +++LA++  N  TT    N  ES L
Sbjct: 229 NLMNIATRYNLAVVVMNQVTTKISPNQKESIL 260

Involved in the homologous recombination repair (HRR) pathway of double-stranded DNA breaks arising during DNA replication or induced by DNA-damaging agents.

Dictyostelium discoideum (taxid: 44689)

>sp|Q975Y1|RADA_SULTO DNA repair and recombination protein RadA OS=Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=radA PE=3 SV=1

 Score =  110 bits (274), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 119/229 (51%), Gaps = 54/229 (23%)

Query: 15  KLISAGYTSLSSICSASSSDISRGT----QTAWDMLQEEQESL----------------- 53
           KLI AGY+SL ++  AS  D+S        TA  +++E +E+L                 
Sbjct: 27  KLIEAGYSSLEAVAVASPQDLSVAAGIPLTTAQRIIKEAREALDIRFKTALEVKKERINT 86

Query: 54  ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY 113
            +ITT    LD +LGGGI  R +TE+ G  G GKTQL  QL+VNVQ+P+E GGLGGKA+Y
Sbjct: 87  KKITTGSQALDGLLGGGIETRTMTELFGEFGSGKTQLCHQLSVNVQLPLEKGGLGGKAVY 146

Query: 114 I--------------GKCLG----------FY------TEQSAVINYLDKFVSEHKDVKV 143
           I               K +G          +Y        Q A+++ L + +S+   +K+
Sbjct: 147 IDTEGTFRWERIEAMSKAIGLEPDSAMNNIYYMRAINSDHQMAIVDDLQELISKDPAIKL 206

Query: 144 VIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
           VI+DS+  HFR  F    +LA+R + L+    +L+ LA+ + LA++  N
Sbjct: 207 VIVDSVTSHFRAEFPGRENLAVRQQKLNKHLHQLVRLAEMYDLAVIITN 255

Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules.

Sulfolobus tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7) (taxid: 273063)

>sp|A4YCN4|RADA_METS5 DNA repair and recombination protein RadA OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=radA PE=3 SV=1

 Score =  105 bits (261), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 77/230 (33%), Positives = 113/230 (49%), Gaps = 54/230 (23%)

Query: 14  GKLISAGYTSLSSICSASSSDIS-----------RGTQTAWDML----------QEEQES 52
            KL  AGY++L SI  AS  D+S           R  + A D L          ++E+ S
Sbjct: 26  NKLTEAGYSTLESIAVASPQDLSTAAGIPITTAQRIIKEARDALDIRFKTALEIEQERAS 85

Query: 53  LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
           + +ITT    LD +LGGGI  R +TE+ G  G GKTQ+  Q++VNVQ+P E GGL GKA+
Sbjct: 86  VKKITTGSQALDGLLGGGIETRTMTELFGEFGSGKTQICHQVSVNVQLPPERGGLSGKAL 145

Query: 113 YIGKCLGFYTE------------------------------QSAVINYLDKFVSEHKDVK 142
           YI     F TE                              Q A++  L   +++   +K
Sbjct: 146 YIDTEGTFRTERIKAMASALGLEPKEVLQNIMSIRAINTDHQIAIVEELQDIIAKDNSIK 205

Query: 143 VVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
           +V++DSI  HFR    G  +LA+R + L+    +L+ LA+ + LA++  N
Sbjct: 206 LVVVDSITSHFRAEYSGRENLAVRQQKLNRHLHQLVRLAEIYDLAVIVTN 255

Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules.

Metallosphaera sedula (strain ATCC 51363 / DSM 5348) (taxid: 399549)

>sp|P0CW91|RADA_AERPX DNA repair and recombination protein RadA OS=Aeropyrum pernix GN=radA PE=3 SV=1

 Score =  103 bits (258), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 125/241 (51%), Gaps = 58/241 (24%)

Query: 2   EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISRGT--------------------- 39
           +++ LP +  T   KL+ AGYT+L +I +A+  ++S+ T                     
Sbjct: 10  DITDLPGVGPTTAQKLMEAGYTTLEAIAAATPQEVSQATGIPILTAQKIVDAAREALNID 69

Query: 40  -QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
            +TA+D L+ E  ++ +ITT   +LD +LGGGI  + +TE+ G  G GKTQ+  QL+VNV
Sbjct: 70  FKTAYD-LKIESMNIKKITTGSRNLDELLGGGIETKTITELFGEFGSGKTQICHQLSVNV 128

Query: 99  QIPVEFGGLGGKAIYIGKCLGFYTE------------------------------QSAVI 128
           Q+P + GGL GKA+YI     F  E                              Q A++
Sbjct: 129 QLPEDKGGLEGKAVYIDTEGTFRWERIEQMARGVGLDPDEVMKNIYWIRAINSHHQIAIV 188

Query: 129 NYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLAL 185
           + L   V ++ ++K+V++DS+  HFR  F    +LA+R ++L+    +LM LA  F++A+
Sbjct: 189 DKLFTMV-KNDNIKLVVVDSVTSHFRAEFPGRENLAMRQQLLNRHLHQLMRLADIFNVAV 247

Query: 186 L 186
           +
Sbjct: 248 V 248

Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules.

Aeropyrum pernix (taxid: 56636)

>sp|C3N7M8|RADA_SULIY DNA repair and recombination protein RadA OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=radA PE=3 SV=1

 Score =  103 bits (258), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 123/242 (50%), Gaps = 55/242 (22%)

Query: 3   VSKLP-ISATQRGKLISAGYTSLSSICSASSSDIS--------------RGTQTAWDM-- 45
           ++ LP IS T   KLI AGY+SL ++  AS  D+S              +  + A D+  
Sbjct: 14  INDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRF 73

Query: 46  -----LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
                +++E+ ++ +I+T    LD +L GGI  R +TE  G  G GKTQL  QL+VNVQ+
Sbjct: 74  KTALEVKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQL 133

Query: 101 PVEFGGLGGKAIYI--------------GKCLG----------FY------TEQSAVINY 130
           P E GGL GKA+YI               K LG          +Y        Q A+++ 
Sbjct: 134 PPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDD 193

Query: 131 LDKFVSEHKDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLE 187
           L + VS+   +K++++DS+  HFR    G  +LA+R + L+    +L  LA+ + +A++ 
Sbjct: 194 LQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVII 253

Query: 188 PN 189
            N
Sbjct: 254 TN 255

Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules.

Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) (taxid: 439386)

>sp|C3NFU5|RADA_SULIN DNA repair and recombination protein RadA OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=radA PE=3 SV=1

 Score =  103 bits (258), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 79/242 (32%), Positives = 123/242 (50%), Gaps = 55/242 (22%)

Query: 3   VSKLP-ISATQRGKLISAGYTSLSSICSASSSDIS--------------RGTQTAWDM-- 45
           ++ LP IS T   KLI AGY+SL ++  AS  D+S              +  + A D+  
Sbjct: 14  INDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRF 73

Query: 46  -----LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
                +++E+ ++ +I+T    LD +L GGI  R +TE  G  G GKTQL  QL+VNVQ+
Sbjct: 74  KTALEVKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQL 133

Query: 101 PVEFGGLGGKAIYI--------------GKCLG----------FY------TEQSAVINY 130
           P E GGL GKA+YI               K LG          +Y        Q A+++ 
Sbjct: 134 PPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDD 193

Query: 131 LDKFVSEHKDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLE 187
           L + VS+   +K++++DS+  HFR    G  +LA+R + L+    +L  LA+ + +A++ 
Sbjct: 194 LQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVII 253

Query: 188 PN 189
            N
Sbjct: 254 TN 255

Involved in DNA repair and in homologous recombination. Binds and assemble on single-stranded DNA to form a nucleoprotein filament. Hydrolyzes ATP in a ssDNA-dependent manner and promotes DNA strand exchange between homologous DNA molecules.

Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) (taxid: 419942)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
449432271	346	PREDICTED: DNA repair protein RAD51 homo	0.849	0.554	0.507	5e-62
225454007	346	PREDICTED: DNA repair protein RAD51 homo	0.858	0.560	0.521	4e-61
357469749	347	DNA repair protein RAD51-like protein [M	0.862	0.561	0.471	5e-60
357477597	347	DNA repair protein RAD51-like protein [M	0.862	0.561	0.467	7e-59
255541250	346	DNA repair and recombination protein rad	0.858	0.560	0.517	8e-59
18406752	363	DNA repair protein RAD51-like 3 [Arabido	0.849	0.528	0.511	3e-57
10944745	363	RAD51C protein [Arabidopsis thaliana]	0.849	0.528	0.511	3e-57
26451592	342	putative f4l23 RAD51Calpha DNA repair-re	0.849	0.561	0.511	3e-57
19310403	363	At2g45280/F4L23.21 [Arabidopsis thaliana	0.849	0.528	0.507	2e-56
334184917	387	DNA repair protein RAD51-like 3 [Arabido	0.849	0.496	0.469	2e-54

>gi|449432271|ref|XP_004133923.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Cucumis sativus] gi|449480051|ref|XP_004155785.1| PREDICTED: DNA repair protein RAD51 homolog 3-like [Cucumis sativus]

 Score =  243 bits (619), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 140/276 (50%), Positives = 161/276 (58%), Gaps = 84/276 (30%)

Query: 1   MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------- 37
           MEV +LPISAT RGKLIS+GYT+LSS+ S S SD++R                       
Sbjct: 1   MEVGRLPISATLRGKLISSGYTTLSSLASVSPSDLARELEISNNEAFDVLKLASHGRGLD 60

Query: 38  ----------GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGK 87
                     G +TAWDML +EQ  + RITTSCADLDN+LGGGI   EVTEIGGVPGIGK
Sbjct: 61  RSDGSGAIVNGAETAWDMLHKEQ-FIPRITTSCADLDNLLGGGINVSEVTEIGGVPGIGK 119

Query: 88  TQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF--------------------------- 120
           TQLGIQLAVNVQIP  FGG+GGKA+YI     F                           
Sbjct: 120 TQLGIQLAVNVQIPGAFGGVGGKAVYIDTEGSFMVERALQIAEACIEDMSDYSVLLKKNA 179

Query: 121 -----------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGF 157
                                  YTEQ A+INYLDKF++EHKDVKVVI+DS+ FHFR  F
Sbjct: 180 IPHQIQIEPKDILENIFYFRVCSYTEQIALINYLDKFITEHKDVKVVIVDSVTFHFRQNF 239

Query: 158 VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
            DLALRTR+LS +ALK M LAKKFSLA++  N  TT
Sbjct: 240 DDLALRTRLLSEMALKFMKLAKKFSLAVVLFNQVTT 275

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454007|ref|XP_002280748.1| PREDICTED: DNA repair protein RAD51 homolog 3 [Vitis vinifera] gi|296089196|emb|CBI38899.3| unnamed protein product [Vitis vinifera]

 Score =  239 bits (611), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 145/278 (52%), Positives = 161/278 (57%), Gaps = 84/278 (30%)

Query: 1   MEVSKLPISATQRGKLISAGYTS--------------------------LSSICSASSSD 34
           ME+++LPISA+QRGKLISAGYTS                          L  +   S  D
Sbjct: 1   MELARLPISASQRGKLISAGYTSLSSLSSLSPSTLAQDLKISDNEALEILRVVSQGSRLD 60

Query: 35  -------ISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGK 87
                  I  G QTAWDML EE ESL  ITTSC DLD+ILGGGI C+EVTEIGGVPGIGK
Sbjct: 61  KPDGSHAIVNGAQTAWDMLHEE-ESLKCITTSCVDLDDILGGGIKCKEVTEIGGVPGIGK 119

Query: 88  TQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF--------------------------- 120
           TQLGIQLAVNVQIPV +GGLGGKAIYI     F                           
Sbjct: 120 TQLGIQLAVNVQIPVNYGGLGGKAIYIDTEGSFMLERSLQIAEACIEDMSGNSDFLQKDF 179

Query: 121 -----------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGF 157
                                  YTEQ A+INYLDKF+SEHKDV VVIIDS+ FHFR  F
Sbjct: 180 QSCQVKAQPKDFLQNIFYFRVCSYTEQIAMINYLDKFISEHKDVNVVIIDSVTFHFRQDF 239

Query: 158 VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195
            DLALRTR+LSG+ALKLM LAKKFSLA++  N  TT +
Sbjct: 240 DDLALRTRLLSGMALKLMKLAKKFSLAVVLLNQVTTKH 277

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357469749|ref|XP_003605159.1| DNA repair protein RAD51-like protein [Medicago truncatula] gi|355506214|gb|AES87356.1| DNA repair protein RAD51-like protein [Medicago truncatula]

 Score =  236 bits (602), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 132/280 (47%), Positives = 163/280 (58%), Gaps = 85/280 (30%)

Query: 1   MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------- 37
           ME+  LPISA++RGKL++AGYT+L SI   S++ ++R                       
Sbjct: 1   MEIGMLPISASKRGKLLAAGYTTLHSILRTSTTHLARDIEVSESEALEILNFATRSSDLD 60

Query: 38  -----------GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
                      G QTAWDML EE+ S + ITTSC DLDNILGGGI C+EVTEIGGVPGIG
Sbjct: 61  KSSGSNANVIHGGQTAWDMLNEERFS-SLITTSCLDLDNILGGGINCKEVTEIGGVPGIG 119

Query: 87  KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF-------------------------- 120
           KTQ+GIQLAVNVQIP+++GGLGGKAIYI     F                          
Sbjct: 120 KTQIGIQLAVNVQIPLDYGGLGGKAIYIDTEGSFMVERVLQIAEACIEDLSEYSHHFYKD 179

Query: 121 ------------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHG 156
                                   YTEQ A++NYLDKFV+EHKDVK++IIDS+ FHFR  
Sbjct: 180 NQAFGVKMHPNSILENIFYFRVCSYTEQIALVNYLDKFVTEHKDVKIIIIDSVTFHFRQD 239

Query: 157 FVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196
           F D+ALRTR+L  ++LKLM LAK FSLA++  N  TT ++
Sbjct: 240 FDDMALRTRLLGEMSLKLMKLAKNFSLAVVMLNQVTTKHI 279

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357477597|ref|XP_003609084.1| DNA repair protein RAD51-like protein [Medicago truncatula] gi|357477663|ref|XP_003609117.1| DNA repair protein RAD51-like protein [Medicago truncatula] gi|355510139|gb|AES91281.1| DNA repair protein RAD51-like protein [Medicago truncatula] gi|355510172|gb|AES91314.1| DNA repair protein RAD51-like protein [Medicago truncatula]

 Score =  232 bits (592), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 131/280 (46%), Positives = 161/280 (57%), Gaps = 85/280 (30%)

Query: 1   MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------- 37
           ME+  LPISA++RGKL++AGYT+L SI   S++ + R                       
Sbjct: 1   MEIGMLPISASKRGKLLAAGYTTLHSILRTSTTHLVRDIEVSESEALEILNFATRSNDLD 60

Query: 38  -----------GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
                      G QTAWDML EE+ S + ITTSC DLDNILGGGI C+EVTEIGGVPGIG
Sbjct: 61  KSSGSNTNVIDGGQTAWDMLNEERFS-SLITTSCLDLDNILGGGINCKEVTEIGGVPGIG 119

Query: 87  KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF-------------------------- 120
           KTQ+GIQLAVNVQIP+++GGLGGKAIYI     F                          
Sbjct: 120 KTQIGIQLAVNVQIPLDYGGLGGKAIYIDTEGSFMVERVLQIAEACIEDMSEYSHHFHKD 179

Query: 121 ------------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHG 156
                                   YTEQ A++NYLDKFV+EHKDVK++IIDS+ FHFR  
Sbjct: 180 NQAFGVKMHPNSILENIFYFRVCSYTEQIALVNYLDKFVTEHKDVKIIIIDSVTFHFRQD 239

Query: 157 FVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL 196
           F D+ALRTR+L  ++LKLM LAK  SLA++  N  TT ++
Sbjct: 240 FDDMALRTRLLGEMSLKLMKLAKNLSLAVVMLNQVTTKHI 279

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541250|ref|XP_002511689.1| DNA repair and recombination protein radA, putative [Ricinus communis] gi|223548869|gb|EEF50358.1| DNA repair and recombination protein radA, putative [Ricinus communis]

 Score =  232 bits (592), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 144/278 (51%), Positives = 164/278 (58%), Gaps = 84/278 (30%)

Query: 1   MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------- 37
           MEVS+LP+SA+QRGKLI AGYTSLSS+ S S SD++R                       
Sbjct: 1   MEVSRLPLSASQRGKLILAGYTSLSSLSSVSPSDLARDLKISDSEALEILKVASRNSRLD 60

Query: 38  ----------GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGK 87
                     G Q AW+ML EE  SL RITTSCADLDNILGGGI C+EVTEIGG+PGIGK
Sbjct: 61  GMEGCHAVINGAQNAWEMLHEES-SLTRITTSCADLDNILGGGITCKEVTEIGGLPGIGK 119

Query: 88  TQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF--------------------------- 120
           TQLGIQLAVNVQIP   GGLGGKA+YI     F                           
Sbjct: 120 TQLGIQLAVNVQIPPYCGGLGGKAVYIDTEGSFMVERVLQVAEASVEDMLEYSRFLRRDL 179

Query: 121 -----------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGF 157
                                  YTEQ A++NYL+KF+SEH+DVKVVIIDSI FHFR  F
Sbjct: 180 QTCQVATQSKDILENIYYFRVCSYTEQVALVNYLEKFISEHRDVKVVIIDSITFHFRQDF 239

Query: 158 VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN 195
            DLALRTRVLSG+ALKLM +AK FSLA++  N  TT +
Sbjct: 240 DDLALRTRVLSGMALKLMKIAKSFSLAVVLLNQVTTKH 277

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18406752|ref|NP_566040.1| DNA repair protein RAD51-like 3 [Arabidopsis thaliana] gi|55583940|sp|Q8GXF0.2|RA51C_ARATH RecName: Full=DNA repair protein RAD51 homolog 3; AltName: Full=DNA repair-recombination protein RAD51C; Short=AtRAD51C gi|11064475|emb|CAC14294.1| Rad51C protein [Arabidopsis thaliana] gi|15425731|dbj|BAB64343.1| AtRAD51Calpha [Arabidopsis thaliana] gi|20196911|gb|AAB82635.2| putative RAD51C-like DNA repair protein [Arabidopsis thaliana] gi|330255439|gb|AEC10533.1| DNA repair protein RAD51-like 3 [Arabidopsis thaliana]

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 139/272 (51%), Positives = 160/272 (58%), Gaps = 80/272 (29%)

Query: 1   MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------- 37
           ME  +LP+S + RGKLISAGYT LSSI S SSSD++R                       
Sbjct: 22  MEAWRLPLSPSIRGKLISAGYTCLSSIASVSSSDLARDANITEEEAFEILKLANQSCCNG 81

Query: 38  ------GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
                 G + AWDML EE ESL RITTSC+DLDNILGGGI CR+VTEIGGVPGIGKTQ+G
Sbjct: 82  SRSLINGAKNAWDMLHEE-ESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIG 140

Query: 92  IQLAVNVQIPVEFGGLGGKAIYIGKCLGF------------------------------- 120
           IQL+VNVQIP E GGLGGKAIYI     F                               
Sbjct: 141 IQLSVNVQIPRECGGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQ 200

Query: 121 -------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA 161
                              YTEQ A++N+L+KF+SE+KDVKVVI+DSI FHFR  + DLA
Sbjct: 201 VQMKPEDILENIFYFRVCSYTEQIALVNHLEKFISENKDVKVVIVDSITFHFRQDYDDLA 260

Query: 162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
            RTRVLS +ALK M LAKKFSLA++  N  TT
Sbjct: 261 QRTRVLSEMALKFMKLAKKFSLAVVLLNQVTT 292

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10944745|emb|CAC14091.1| RAD51C protein [Arabidopsis thaliana]

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 139/272 (51%), Positives = 160/272 (58%), Gaps = 80/272 (29%)

Query: 1   MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------- 37
           ME  +LP+S + RGKLISAGYT LSSI S SSSD++R                       
Sbjct: 22  MEAWRLPLSPSIRGKLISAGYTCLSSIASVSSSDLARDANITEEEAFEILKLANQSCCNG 81

Query: 38  ------GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
                 G + AWDML EE ESL RITTSC+DLDNILGGGI CR+VTEIGGVPGIGKTQ+G
Sbjct: 82  SRSLINGAKNAWDMLHEE-ESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIG 140

Query: 92  IQLAVNVQIPVEFGGLGGKAIYIGKCLGF------------------------------- 120
           IQL+VNVQIP E GGLGGKAIYI     F                               
Sbjct: 141 IQLSVNVQIPRECGGLGGKAIYIDTEGSFMVKRALQIAEACVEDMEEYTGYMHKHFQANQ 200

Query: 121 -------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA 161
                              YTEQ A++N+L+KF+SE+KDVKVVI+DSI FHFR  + DLA
Sbjct: 201 VQMKPEDILENIFYFRVCSYTEQIALVNHLEKFISENKDVKVVIVDSITFHFRQDYDDLA 260

Query: 162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
            RTRVLS +ALK M LAKKFSLA++  N  TT
Sbjct: 261 QRTRVLSEMALKFMKLAKKFSLAVVLLNQVTT 292

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26451592|dbj|BAC42893.1| putative f4l23 RAD51Calpha DNA repair-recombination factor [Arabidopsis thaliana]

 Score =  227 bits (578), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 139/272 (51%), Positives = 160/272 (58%), Gaps = 80/272 (29%)

Query: 1   MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------- 37
           ME  +LP+S + RGKLISAGYT LSSI S SSSD++R                       
Sbjct: 1   MEAWRLPLSPSIRGKLISAGYTCLSSIASVSSSDLARDANITEEEAFEILKLANQSCCNG 60

Query: 38  ------GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
                 G + AWDML EE ESL RITTSC+DLDNILGGGI CR+VTEIGGVPGIGKTQ+G
Sbjct: 61  SRSLINGAKNAWDMLHEE-ESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIG 119

Query: 92  IQLAVNVQIPVEFGGLGGKAIYIGKCLGF------------------------------- 120
           IQL+VNVQIP E GGLGGKAIYI     F                               
Sbjct: 120 IQLSVNVQIPRECGGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQ 179

Query: 121 -------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA 161
                              YTEQ A++N+L+KF+SE+KDVKVVI+DSI FHFR  + DLA
Sbjct: 180 VQMKPEDILENIFYFRVCSYTEQIALVNHLEKFISENKDVKVVIVDSITFHFRQDYDDLA 239

Query: 162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
            RTRVLS +ALK M LAKKFSLA++  N  TT
Sbjct: 240 QRTRVLSEMALKFMKLAKKFSLAVVLLNQVTT 271

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|19310403|gb|AAL84941.1| At2g45280/F4L23.21 [Arabidopsis thaliana]

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 138/272 (50%), Positives = 160/272 (58%), Gaps = 80/272 (29%)

Query: 1   MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------- 37
           ME  +LP+S + RGKLISAGYT LSSI S SSSD++R                       
Sbjct: 22  MEAWRLPLSPSIRGKLISAGYTCLSSIASVSSSDLARDANITEEEAFEILKLANQSCCNG 81

Query: 38  ------GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLG 91
                 G + AWDML EE ESL RITTSC+DLDNILGGGI CR+VTEIGGVPGIGKTQ+G
Sbjct: 82  SRSLINGAKNAWDMLHEE-ESLPRITTSCSDLDNILGGGISCRDVTEIGGVPGIGKTQIG 140

Query: 92  IQLAVNVQIPVEFGGLGGKAIYIGKCLGF------------------------------- 120
           IQL+VNVQIP E GGLGGKAIYI     F                               
Sbjct: 141 IQLSVNVQIPRECGGLGGKAIYIDTEGSFMVERALQIAEACVEDMEEYTGYMHKHFQANQ 200

Query: 121 -------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA 161
                              YTEQ A++++L+KF+SE+KDVKVVI+DSI FHFR  + DLA
Sbjct: 201 VQMKPEDILENIFYFRVCSYTEQIALVSHLEKFISENKDVKVVIVDSITFHFRQDYDDLA 260

Query: 162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
            RTRVLS +ALK M LAKKFSLA++  N  TT
Sbjct: 261 QRTRVLSEMALKFMKLAKKFSLAVVLLNQVTT 292

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334184917|ref|NP_001189749.1| DNA repair protein RAD51-like 3 [Arabidopsis thaliana] gi|330255440|gb|AEC10534.1| DNA repair protein RAD51-like 3 [Arabidopsis thaliana]

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 139/296 (46%), Positives = 160/296 (54%), Gaps = 104/296 (35%)

Query: 1   MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISRG---------------------- 38
           ME  +LP+S + RGKLISAGYT LSSI S SSSD++RG                      
Sbjct: 22  MEAWRLPLSPSIRGKLISAGYTCLSSIASVSSSDLARGKFLLYPNLRRLESVARFSLIST 81

Query: 39  -------------------------------TQTAWDMLQEEQESLARITTSCADLDNIL 67
                                           + AWDML EE ESL RITTSC+DLDNIL
Sbjct: 82  DNANITEEEAFEILKLANQSCCNGSRSLINGAKNAWDMLHEE-ESLPRITTSCSDLDNIL 140

Query: 68  GGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF------- 120
           GGGI CR+VTEIGGVPGIGKTQ+GIQL+VNVQIP E GGLGGKAIYI     F       
Sbjct: 141 GGGISCRDVTEIGGVPGIGKTQIGIQLSVNVQIPRECGGLGGKAIYIDTEGSFMVERALQ 200

Query: 121 -------------------------------------------YTEQSAVINYLDKFVSE 137
                                                      YTEQ A++N+L+KF+SE
Sbjct: 201 IAEACVEDMEEYTGYMHKHFQANQVQMKPEDILENIFYFRVCSYTEQIALVNHLEKFISE 260

Query: 138 HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT 193
           +KDVKVVI+DSI FHFR  + DLA RTRVLS +ALK M LAKKFSLA++  N  TT
Sbjct: 261 NKDVKVVIVDSITFHFRQDYDDLAQRTRVLSEMALKFMKLAKKFSLAVVLLNQVTT 316

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	226
ZFIN|ZDB-GENE-041010-204	362	rad51c "rad51 homolog C (S. ce	0.323	0.201	0.608	1.2e-36
UNIPROTKB|F1S262	321	RAD51C "Uncharacterized protei	0.323	0.227	0.540	3.7e-35
UNIPROTKB|F1PMI7	368	RAD51C "Uncharacterized protei	0.323	0.198	0.567	6.8e-35
DICTYBASE|DDB_G0284507	381	DDB_G0284507 "putative Rad51C	0.327	0.194	0.472	7.3e-28
UNIPROTKB|Q8R2J9	366	RAD51C "DNA repair protein RAD	0.438	0.270	0.457	1e-19
MGI|MGI:2150020	366	Rad51c "RAD51 homolog C" [Mus	0.557	0.344	0.387	3.1e-19
RGD|1563765	366	Rad51c "Rad51 homolog c (S. ce	0.557	0.344	0.387	2.1e-18
UNIPROTKB|J3QKK3	346	RAD51C "DNA repair protein RAD	0.433	0.283	0.432	5.5e-18
UNIPROTKB|O43502	376	RAD51C "DNA repair protein RAD	0.433	0.260	0.432	1e-17
UNIPROTKB|F1MW99	382	RAD51C "Uncharacterized protei	0.438	0.259	0.428	4.3e-17

ZFIN|ZDB-GENE-041010-204 rad51c "rad51 homolog C (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 222 (83.2 bits), Expect = 1.2e-36, Sum P(3) = 1.2e-36
 Identities = 45/74 (60%), Positives = 57/74 (77%)

Query:    41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
             TA D+L +EQ +L  I T C+ LD+ +GGG+   + TEI G PG+GKTQL +QLAV+VQI
Sbjct:    72 TALDLLHQEQ-TLGSIVTFCSGLDDAIGGGVPVGKTTEICGAPGVGKTQLCMQLAVDVQI 130

Query:   101 PVEFGGLGGKAIYI 114
             PV FGGLGGKA+YI
Sbjct:   131 PVFFGGLGGKALYI 144

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006259 "DNA metabolic process" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

UNIPROTKB|F1S262 RAD51C "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 197 (74.4 bits), Expect = 3.7e-35, Sum P(3) = 3.7e-35
 Identities = 40/74 (54%), Positives = 56/74 (75%)

Query:    41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
             TA ++L++E    + I T C+ LDNILGGG+   ++TEI G PG+GKTQL +QLAV+VQI
Sbjct:    77 TALELLEQEHTQ-SFIITFCSALDNILGGGVPLTKITEICGAPGVGKTQLCMQLAVDVQI 135

Query:   101 PVEFGGLGGKAIYI 114
             P  FGG+ G+A++I
Sbjct:   136 PECFGGVEGEAVFI 149

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0008821 "crossover junction endodeoxyribonuclease activity" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0007141 "male meiosis I" evidence=IEA

GO:0007131 "reciprocal meiotic recombination" evidence=IEA

GO:0007066 "female meiosis sister chromatid cohesion" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0003684 "damaged DNA binding" evidence=IEA

UNIPROTKB|F1PMI7 RAD51C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 199 (75.1 bits), Expect = 6.8e-35, Sum P(3) = 6.8e-35
 Identities = 42/74 (56%), Positives = 56/74 (75%)

Query:    41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
             TA ++L++E    + I T C+ LDNILGGGI   + TEI GVPG+GKTQL +QLAV+VQI
Sbjct:    79 TALELLEQEHTQ-SFIITFCSALDNILGGGIPLTKTTEICGVPGVGKTQLCMQLAVDVQI 137

Query:   101 PVEFGGLGGKAIYI 114
             P  FGG+ G+A++I
Sbjct:   138 PECFGGVEGEAVFI 151

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0008821 "crossover junction endodeoxyribonuclease activity" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0007141 "male meiosis I" evidence=IEA

GO:0007131 "reciprocal meiotic recombination" evidence=IEA

GO:0007066 "female meiosis sister chromatid cohesion" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

DICTYBASE|DDB_G0284507 DDB_G0284507 "putative Rad51C protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 182 (69.1 bits), Expect = 7.3e-28, Sum P(2) = 7.3e-28
 Identities = 35/74 (47%), Positives = 50/74 (67%)

Query:    41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
             +A D+L + ++    I T C+++D +L GG   +++TEI GVPGIGKT +  QL VN  I
Sbjct:    49 SALDLLIQGRDGNNNIITFCSEIDQMLNGGTPLKKITEICGVPGIGKTNMAFQLLVNTSI 108

Query:   101 PVEFGGLGGKAIYI 114
             P + GG+ GKAIYI
Sbjct:   109 PFDLGGVQGKAIYI 122

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0006259 "DNA metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0006310 "DNA recombination" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q8R2J9 RAD51C "DNA repair protein RAD51 homolog 3" [Cricetulus griseus (taxid:10029)]

 Score = 209 (78.6 bits), Expect = 1.0e-19, Sum P(2) = 1.0e-19
 Identities = 48/105 (45%), Positives = 66/105 (62%)

Query:    41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
             TA ++L++E      I T C+ LDNILGGGI   + TE+ GVPG+GKTQL +QLAV+VQI
Sbjct:    77 TALELLEQEHTQ-GFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQI 135

Query:   101 PVEFGGLGGKAIYIGKCLGFYTEQ-----SAVINYLDKFVSEHKD 140
             P  FGG+ G+A++I     F  ++     +A I +L      HKD
Sbjct:   136 PECFGGVAGEAVFIDTEGSFMVDRVVTLANACIQHLHLIAGTHKD 180

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006281 "DNA repair" evidence=ISS

GO:0006310 "DNA recombination" evidence=ISS

GO:0007062 "sister chromatid cohesion" evidence=IMP

GO:0048471 "perinuclear region of cytoplasm" evidence=ISS

MGI|MGI:2150020 Rad51c "RAD51 homolog C" [Mus musculus (taxid:10090)]

 Score = 204 (76.9 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
 Identities = 55/142 (38%), Positives = 81/142 (57%)

Query:    41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
             TA ++L++E      I T C+ LDNILGGGI   + TE+ GVPG+GKTQL +QLAV+VQI
Sbjct:    77 TALELLEQEHTQ-GFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQI 135

Query:   101 PVEFGGLGGKAIYIGKCLGFYTEQ-----SAVINYLDKFVSEH------KDVKVVIIDSI 149
             P  FGG+ G+A++I     F  ++     +A I +L      H      K +K   +++I
Sbjct:   136 PECFGGVAGEAVFIDTEGSFMVDRVVSLATACIQHLHLIAGTHTEEEHQKALKDFTLENI 195

Query:   150 AFH---FR-HGFVDLALRTRVL 167
               H   FR H + +L  +  +L
Sbjct:   196 LSHIYYFRCHDYTELLAQVYLL 217

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0006259 "DNA metabolic process" evidence=IEA

GO:0006281 "DNA repair" evidence=ISO

GO:0006310 "DNA recombination" evidence=ISO

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0007066 "female meiosis sister chromatid cohesion" evidence=IMP

GO:0007131 "reciprocal meiotic recombination" evidence=IMP

GO:0007141 "male meiosis I" evidence=IMP

GO:0007283 "spermatogenesis" evidence=IMP

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0008821 "crossover junction endodeoxyribonuclease activity" evidence=IMP

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0048476 "Holliday junction resolvase complex" evidence=IC

RGD|1563765 Rad51c "Rad51 homolog c (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 204 (76.9 bits), Expect = 2.1e-18, Sum P(2) = 2.1e-18
 Identities = 55/142 (38%), Positives = 81/142 (57%)

Query:    41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
             TA ++L++E      I T C+ LDNILGGGI   + TE+ GVPG+GKTQL +QLAV+VQI
Sbjct:    77 TALELLEQEHTQ-GFIITFCSALDNILGGGIPLMKTTEVCGVPGVGKTQLCMQLAVDVQI 135

Query:   101 PVEFGGLGGKAIYIGKCLGFYTEQ-----SAVINYLDKFVSEH------KDVKVVIIDSI 149
             P  FGG+ G+A++I     F  ++     +A I +L      H      K +K   +++I
Sbjct:   136 PECFGGVAGEAVFIDTEGSFMVDRVVSLATACIQHLHLIAGTHTEEEQQKALKDFTLENI 195

Query:   150 AFH---FR-HGFVDLALRTRVL 167
               H   FR H + +L  +  +L
Sbjct:   196 LSHIYYFRCHDYTELLAQVYLL 217

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006281 "DNA repair" evidence=IEA;ISO

GO:0006310 "DNA recombination" evidence=ISO

GO:0007066 "female meiosis sister chromatid cohesion" evidence=IEA;ISO

GO:0007131 "reciprocal meiotic recombination" evidence=IEA;ISO

GO:0007141 "male meiosis I" evidence=IEA;ISO

GO:0007283 "spermatogenesis" evidence=IEA;ISO

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0008821 "crossover junction endodeoxyribonuclease activity" evidence=IEA;ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA;ISO

UNIPROTKB|J3QKK3 RAD51C "DNA repair protein RAD51 homolog 3" [Homo sapiens (taxid:9606)]

 Score = 197 (74.4 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
 Identities = 45/104 (43%), Positives = 65/104 (62%)

Query:    41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
             TA ++L++E      I T C+ LD+ILGGG+   + TEI G PG+GKTQL +QLAV+VQI
Sbjct:    86 TALELLEQEHTQ-GFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQI 144

Query:   101 PVEFGGLGGKAIYIGKCLGFYTEQ-----SAVINYLDKFVSEHK 139
             P  FGG+ G+A++I     F  ++     +A I +L     +HK
Sbjct:   145 PECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHK 188

GO:0003677 "DNA binding" evidence=IEA

GO:0006259 "DNA metabolic process" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|O43502 RAD51C "DNA repair protein RAD51 homolog 3" [Homo sapiens (taxid:9606)]

 Score = 197 (74.4 bits), Expect = 1.0e-17, Sum P(2) = 1.0e-17
 Identities = 45/104 (43%), Positives = 65/104 (62%)

Query:    41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
             TA ++L++E      I T C+ LD+ILGGG+   + TEI G PG+GKTQL +QLAV+VQI
Sbjct:    86 TALELLEQEHTQ-GFIITFCSALDDILGGGVPLMKTTEICGAPGVGKTQLCMQLAVDVQI 144

Query:   101 PVEFGGLGGKAIYIGKCLGFYTEQ-----SAVINYLDKFVSEHK 139
             P  FGG+ G+A++I     F  ++     +A I +L     +HK
Sbjct:   145 PECFGGVAGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAEKHK 188

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007066 "female meiosis sister chromatid cohesion" evidence=IEA

GO:0007131 "reciprocal meiotic recombination" evidence=IEA

GO:0007141 "male meiosis I" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0008821 "crossover junction endodeoxyribonuclease activity" evidence=IEA

GO:0006281 "DNA repair" evidence=IDA

GO:0006310 "DNA recombination" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007062 "sister chromatid cohesion" evidence=ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1MW99 RAD51C "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 192 (72.6 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
 Identities = 45/105 (42%), Positives = 64/105 (60%)

Query:    41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
             TA ++L++E      I T C+ LDNILGGGI   + TEI G PG+GKTQL +QLA++VQI
Sbjct:    87 TALELLEQEHTQNF-IITFCSALDNILGGGIPLTKTTEICGAPGVGKTQLCMQLAIDVQI 145

Query:   101 PVEFGGLGGKAIYIGKCLGFYTEQ-----SAVINYLDKFVSEHKD 140
             P  FGG+ G+A++I     F  ++     +A I +L      H +
Sbjct:   146 PECFGGVEGEAVFIDTEGSFMVDRVVDLATACIQHLQLIAGTHME 190

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0008821 "crossover junction endodeoxyribonuclease activity" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0007141 "male meiosis I" evidence=IEA

GO:0007131 "reciprocal meiotic recombination" evidence=IEA

GO:0007066 "female meiosis sister chromatid cohesion" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008094 "DNA-dependent ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	226
cd01123	235	cd01123, Rad51_DMC1_radA, Rad51_DMC1_radA,B	1e-44
cd01393	226	cd01393, recA_like, RecA is a bacterial enzyme whi	2e-37
PRK04301	317	PRK04301, radA, DNA repair and recombination prote	1e-32
TIGR02236	310	TIGR02236, recomb_radA, DNA repair and recombinati	3e-29
COG0468	279	COG0468, RecA, RecA/RadA recombinase [DNA replicat	1e-22
pfam08423	261	pfam08423, Rad51, Rad51	1e-17
PLN03187	344	PLN03187, PLN03187, meiotic recombination protein	2e-17
TIGR02238	313	TIGR02238, recomb_DMC1, meiotic recombinase Dmc1	8e-16
PLN03186	342	PLN03186, PLN03186, DNA repair protein RAD51 homol	3e-14
PTZ00035	337	PTZ00035, PTZ00035, Rad51 protein; Provisional	5e-14
PRK09361	225	PRK09361, radB, DNA repair and recombination prote	1e-13
TIGR02239	316	TIGR02239, recomb_RAD51, DNA repair protein RAD51	1e-12
cd01394	218	cd01394, radB, RadB	9e-11
TIGR02237	209	TIGR02237, recomb_radB, DNA repair and recombinati	5e-08
cd01121	372	cd01121, Sms, Sms (bacterial radA) DNA repair prot	6e-08
COG1066	456	COG1066, Sms, Predicted ATP-dependent serine prote	8e-08
pfam13481	154	pfam13481, AAA_25, AAA domain	6e-07
PRK11823	446	PRK11823, PRK11823, DNA repair protein RadA; Provi	2e-06
TIGR00416	454	TIGR00416, sms, DNA repair protein RadA	3e-04
COG0467	260	COG0467, RAD55, RecA-superfamily ATPases implicate	5e-04
cd03556	584	cd03556, L-fucose_isomerase, L-fucose isomerase (F	5e-04
pfam06745	231	pfam06745, KaiC, KaiC	8e-04
TIGR01089	587	TIGR01089, fucI, L-fucose isomerase	0.004

>gnl|CDD|238543 cd01123, Rad51_DMC1_radA, Rad51_DMC1_radA,B

 Score =  148 bits (377), Expect = 1e-44
 Identities = 55/163 (33%), Positives = 76/163 (46%), Gaps = 35/163 (21%)

Query: 56  ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI- 114
           +TT    LD +LGGGI    +TEI G  G GKTQL  QLAV VQ+P+E GGL GKA+YI 
Sbjct: 1   LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60

Query: 115 ------------------------------GKCLGFYTEQSAVINYLDKFVSEHKDVKVV 144
                                          +       Q  ++  L+  + E   +K+V
Sbjct: 61  TEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY-NSDHQLQLLEELEAILIESSRIKLV 119

Query: 145 IIDSIAFHFRHGFVD---LALRTRVLSGIALKLMNLAKKFSLA 184
           I+DS+   FR  F     LA R + L+ +   L  LA +F++A
Sbjct: 120 IVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFNVA 162

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 . Length = 235

>gnl|CDD|238687 cd01393, recA_like, RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

 Score =  130 bits (328), Expect = 2e-37
 Identities = 58/164 (35%), Positives = 82/164 (50%), Gaps = 34/164 (20%)

Query: 56  ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI- 114
           I+T    LD +LGGGI    +TEI G  G GKTQL +QLAV  Q+P E GGL GK +YI 
Sbjct: 1   ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60

Query: 115 -----------------GKCLG------------FYTEQSAVINYLDKFVSEHKDVKVVI 145
                            G                   +Q  ++  L++ +S  + V +V+
Sbjct: 61  TEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPYNGEQQLEIVEELERIMSSGR-VDLVV 119

Query: 146 IDSIAFHFRHGFVD---LALRTRVLSGIALKLMNLAKKFSLALL 186
           +DS+A  FR  F+    LA R R+LS    KL+ LA KF++A++
Sbjct: 120 VDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFNVAVV 163

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB. Length = 226

>gnl|CDD|235273 PRK04301, radA, DNA repair and recombination protein RadA; Validated

 Score =  119 bits (301), Expect = 1e-32
 Identities = 70/230 (30%), Positives = 110/230 (47%), Gaps = 55/230 (23%)

Query: 15  KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
           KL  AGY ++ +I  AS  ++S     G  TA  +++                  E +++
Sbjct: 21  KLREAGYDTVEAIAVASPKELSEAAGIGESTAAKIIEAAREAADIGGFETALEVLERRKN 80

Query: 53  LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
           + +ITT   +LD +LGGGI  + +TE  G  G GKTQ+  QLAVNVQ+P E GGL GKA+
Sbjct: 81  VGKITTGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAV 140

Query: 113 YI--------------GKCLG----------FYT------EQSAVINYLDKFVSEHKDVK 142
           YI               + LG                    Q  +    ++ + E +++K
Sbjct: 141 YIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAYNSDHQMLLAEKAEELIKEGENIK 200

Query: 143 VVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
           +VI+DS+  HFR  +V   +LA R + L+     L+ LA  ++ A++  N
Sbjct: 201 LVIVDSLTAHFRAEYVGRGNLAERQQKLNKHLHDLLRLADLYNAAVVVTN 250

Length = 317

>gnl|CDD|131290 TIGR02236, recomb_radA, DNA repair and recombination protein RadA

 Score =  110 bits (277), Expect = 3e-29
 Identities = 71/231 (30%), Positives = 107/231 (46%), Gaps = 56/231 (24%)

Query: 15  KLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ------------------EEQES 52
           KL  AGY +  +I  AS  ++S        TA  ++Q                  E +++
Sbjct: 14  KLREAGYDTFEAIAVASPKELSEIAGISEGTAAKIIQAARKAADLGGFETADDVLERRKT 73

Query: 53  LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
           + +ITT   +LD +LGGGI  + +TE+ G  G GKTQ+  QLAVNVQ+P E GGLGGKA+
Sbjct: 74  IGKITTGSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAV 133

Query: 113 YIGKCLGFYTE------------------------------QSAVINYLDKFVSEHKD-V 141
           YI     F  E                              Q  ++   +  + E  + V
Sbjct: 134 YIDTENTFRPERIMQMAEARGLDPDEVLKNIYVARAYNSNHQMLLVEKAEDLIKELNNPV 193

Query: 142 KVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
           K++I+DS+  HFR  +V    LA R + L+     L+ LA  ++ A++  N
Sbjct: 194 KLLIVDSLTSHFRAEYVGRGALAERQQKLNKHLHDLLRLADLYNAAVVVTN 244

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein [DNA metabolism, DNA replication, recombination, and repair]. Length = 310

>gnl|CDD|223544 COG0468, RecA, RecA/RadA recombinase [DNA replication, recombination, and repair]

 Score = 92.3 bits (230), Expect = 1e-22
 Identities = 47/165 (28%), Positives = 71/165 (43%), Gaps = 34/165 (20%)

Query: 48  EEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL 107
           E +E +  I+T    LD  LGGG+    +TEI G    GKT L +QL  N Q P      
Sbjct: 34  ERREDIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKP------ 87

Query: 108 GGKAIYIGKCLGF-----------------------YTEQSAVINYLDKFVSEHKDVKVV 144
           GGKA +I                               +Q  +   L +  +E   + ++
Sbjct: 88  GGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLARSGAE--KIDLL 145

Query: 145 IIDSIAFHFRHGFVD---LALRTRVLSGIALKLMNLAKKFSLALL 186
           ++DS+A   R   ++   L LR R+LS    KL  LA K++ A++
Sbjct: 146 VVDSVAALVRAEEIEDGHLGLRARLLSKALRKLTRLANKYNTAVI 190

Length = 279

>gnl|CDD|117002 pfam08423, Rad51, Rad51

 Score = 78.9 bits (195), Expect = 1e-17
 Identities = 56/185 (30%), Positives = 81/185 (43%), Gaps = 35/185 (18%)

Query: 38  GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
           G  TA ++ Q   E + RITT   +LD +LGGGI    +TE+ G    GKTQL   L V 
Sbjct: 8   GFTTATELHQRRSE-VIRITTGSKELDKLLGGGIETGSITEVFGEFRTGKTQLCHTLCVT 66

Query: 98  VQIPVEFGGLGGKAIYIGKCLGFYTE------------------------------QSAV 127
            Q+P+E GG  GKA+YI     F  E                              Q  +
Sbjct: 67  CQLPLEMGGGEGKALYIDTEGTFRPERIVAIAERFGLDPEEVLDNIAYARAYNTEHQMQL 126

Query: 128 INYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLA 184
           +      +SE +   ++I+DS    +R  F    +LA R + L+     L  LA +F +A
Sbjct: 127 LLQAAAMMSESR-FALLIVDSATALYRTDFSGRGELAERQQHLAKFLRSLQRLADEFGVA 185

Query: 185 LLEPN 189
           ++  N
Sbjct: 186 VVITN 190

Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein. Length = 261

>gnl|CDD|215620 PLN03187, PLN03187, meiotic recombination protein DMC1 homolog; Provisional

 Score = 79.4 bits (196), Expect = 2e-17
 Identities = 60/195 (30%), Positives = 91/195 (46%), Gaps = 33/195 (16%)

Query: 27  ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
           IC A+   +++G  T  D    +++S+ RITT    LD +LGGGI  R +TE  G    G
Sbjct: 80  ICEAAEKLLNQGFITGSD-ALLKRKSVVRITTGSQALDELLGGGIETRCITEAFGEFRSG 138

Query: 87  KTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAV---INYL 131
           KTQL   L V  Q+P E GG  GK  YI     F  ++             AV   I Y 
Sbjct: 139 KTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYA 198

Query: 132 DKFVSEHKD--------------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
             +  EH+                +++I+DS+   FR  F    +LA R + L+ +  +L
Sbjct: 199 RAYTYEHQYNLLLGLAAKMAEEPFRLLIVDSVIALFRVDFTGRGELAERQQKLAQMLSRL 258

Query: 175 MNLAKKFSLALLEPN 189
             +A++F++A+   N
Sbjct: 259 TKIAEEFNVAVYMTN 273

Length = 344

>gnl|CDD|131292 TIGR02238, recomb_DMC1, meiotic recombinase Dmc1

 Score = 74.4 bits (183), Expect = 8e-16
 Identities = 61/195 (31%), Positives = 93/195 (47%), Gaps = 33/195 (16%)

Query: 27  ICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIG 86
           I  A+S  I+ G  TA+++ Q+ ++ L +ITT    LD ILGGGI    +TE+ G    G
Sbjct: 50  IKEAASKIINPGFITAFEISQKRKKVL-KITTGSQALDGILGGGIESMSITEVFGEFRCG 108

Query: 87  KTQLGIQLAVNVQIPVEFGGLGGKAIYIGK------------CLGFYTEQSAV---INYL 131
           KTQL   L V  Q+P E GG  GK  YI                 F  +  AV   I Y 
Sbjct: 109 KTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYA 168

Query: 132 DKFVSEHK--------------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
             + SEH+                +++I+DSI   FR  F    +L+ R + L+ +  +L
Sbjct: 169 RAYTSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRL 228

Query: 175 MNLAKKFSLALLEPN 189
             ++++F++A+   N
Sbjct: 229 NKISEEFNVAVFVTN 243

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis. Length = 313

>gnl|CDD|178728 PLN03186, PLN03186, DNA repair protein RAD51 homolog; Provisional

 Score = 70.1 bits (172), Expect = 3e-14
 Identities = 62/243 (25%), Positives = 98/243 (40%), Gaps = 55/243 (22%)

Query: 1   MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------G 38
            ++    I+A    KL  AG  ++ S+  A   D+ +                      G
Sbjct: 29  EQLQASGIAALDIKKLKDAGIHTVESLAYAPKKDLLQIKGISEAKVEKILEAASKLVPLG 88

Query: 39  TQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
             TA  +  + QE + +ITT   +LD IL GGI    +TEI G    GKTQL   L V  
Sbjct: 89  FTTASQLHAQRQE-IIQITTGSRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTC 147

Query: 99  QIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVIN---YLDKFVSEHK---- 139
           Q+P++ GG  GKA+YI     F  ++            + V+    Y   + ++H+    
Sbjct: 148 QLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAYNTDHQSELL 207

Query: 140 ----------DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALL 186
                        ++I+DS    +R  F    +L+ R   L      L  LA +F +A++
Sbjct: 208 LEAASMMAETRFALMIVDSATALYRTEFSGRGELSARQMHLGKFLRSLQRLADEFGVAVV 267

Query: 187 EPN 189
             N
Sbjct: 268 ITN 270

Length = 342

>gnl|CDD|185407 PTZ00035, PTZ00035, Rad51 protein; Provisional

 Score = 69.6 bits (171), Expect = 5e-14
 Identities = 62/229 (27%), Positives = 92/229 (40%), Gaps = 55/229 (24%)

Query: 15  KLISAGYTSLSSICSASSSDI----------------------SRGTQTAWDMLQEEQES 52
           KL  AG  ++ S+  A+  D+                        G  +A + L+  +  
Sbjct: 38  KLKEAGICTVESVAYATKKDLCNIKGISEAKVEKIKEAASKLVPMGFISATEYLEARKN- 96

Query: 53  LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
           + RITT    LD +LGGGI    +TE+ G    GKTQL   L V  Q+P+E GG  GK +
Sbjct: 97  IIRITTGSTQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVL 156

Query: 113 YIGKCLGFYTEQ------------SAV---INYLDKFVSEH--------------KDVKV 143
           YI     F  E+              V   I Y   +  EH              +   +
Sbjct: 157 YIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAYNHEHQMQLLSQAAAKMAEERFAL 216

Query: 144 VIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
           +I+DS    FR  +    +LA R + L      L  LA +F++A++  N
Sbjct: 217 LIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKLADEFNVAVVITN 265

Length = 337

>gnl|CDD|236482 PRK09361, radB, DNA repair and recombination protein RadB; Provisional

 Score = 67.2 bits (165), Expect = 1e-13
 Identities = 44/162 (27%), Positives = 66/162 (40%), Gaps = 39/162 (24%)

Query: 55  RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
           R+ T C  LD +LGGG     +T+I G PG GKT + +QLAV           G K IYI
Sbjct: 4   RLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAK------NGKKVIYI 57

Query: 115 GKCLGF---------------------------YTEQSAVINYLDKFVSEHKDVKVVIID 147
               G                            + EQS  I   +K   E  +V ++++D
Sbjct: 58  -DTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIRKAEKLAKE--NVGLIVLD 114

Query: 148 SIAFHFRHGFVDLALRTRVLSGIA---LKLMNLAKKFSLALL 186
           S    +R    D    +++   +      L+ LA+K  LA++
Sbjct: 115 SATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDLAVV 156

Length = 225

>gnl|CDD|233794 TIGR02239, recomb_RAD51, DNA repair protein RAD51

 Score = 65.5 bits (160), Expect = 1e-12
 Identities = 44/129 (34%), Positives = 60/129 (46%), Gaps = 23/129 (17%)

Query: 8   ISATQRGKLISAGYTSLSSICSASSSDISR----------------------GTQTAWDM 45
           I+A    KL  AG  ++ S+  A    +                        G  TA + 
Sbjct: 9   ITAADIKKLQEAGLHTVESVAYAPKKQLLEIKGISEAKADKILAEAAKLVPMGFTTATEF 68

Query: 46  LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
            Q  QE + ++TT   +LD +LGGGI    +TEI G    GKTQL   LAV  Q+P++ G
Sbjct: 69  HQRRQE-VIQLTTGSKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQG 127

Query: 106 GLGGKAIYI 114
           G  GKA+YI
Sbjct: 128 GGEGKALYI 136

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012). Length = 316

>gnl|CDD|238688 cd01394, radB, RadB

 Score = 59.0 bits (143), Expect = 9e-11
 Identities = 44/163 (26%), Positives = 64/163 (39%), Gaps = 37/163 (22%)

Query: 56  ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG 115
           + T C  LD +LGGG+    VT++ G PG GKT + IQLAV         G G K  YI 
Sbjct: 1   LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETA------GQGKKVAYID 54

Query: 116 KCLGF--------------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSI 149
                                          + EQ   I   + F  E   V +V++DS 
Sbjct: 55  TEGLSSERFRQIAGDRPERAASSIIVFEPMDFNEQGRAIQETETFADEK--VDLVVVDSA 112

Query: 150 AFHFRHGFVDLALRTRVLSGIALK---LMNLAKKFSLALLEPN 189
              +R    D     +    +A +   L+ LA+K  +A++  N
Sbjct: 113 TALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVVITN 155

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear. Length = 218

>gnl|CDD|233793 TIGR02237, recomb_radB, DNA repair and recombination protein RadB

 Score = 51.3 bits (123), Expect = 5e-08
 Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 36/155 (23%)

Query: 63  LDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF-- 120
           +D +LGGG+    +T+I G PG GKT + + LAVN          G K +YI    G   
Sbjct: 1   IDELLGGGVERGTITQIYGPPGSGKTNICMILAVNAA------RQGKKVVYI-DTEGLSP 53

Query: 121 -------------------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFR- 154
                                    + EQ   I    KF+       +V++DS    +R 
Sbjct: 54  ERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKTSKFIDRDS-ASLVVVDSFTALYRL 112

Query: 155 HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
               D   R R L+     L++LA+K +LA++  N
Sbjct: 113 ELSDDRISRNRELARQLTLLLSLARKKNLAVVITN 147

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236). Length = 209

>gnl|CDD|238541 cd01121, Sms, Sms (bacterial radA) DNA repair protein

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 39/119 (32%), Positives = 52/119 (43%), Gaps = 26/119 (21%)

Query: 49  EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLG 108
           E E   RI T   +LD +LGGG+    V  IGG PGIGK+ L +Q+A            G
Sbjct: 57  EAEEEERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAAR------LAKRG 110

Query: 109 GKAIYI------------GKCLGFYTE------QSAVINYLDKFVSEHKDVKVVIIDSI 149
           GK +Y+               LG  TE      ++ + + L     E     +VIIDSI
Sbjct: 111 GKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASI--EELKPDLVIIDSI 167

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. Length = 372

>gnl|CDD|223993 COG1066, Sms, Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

 Score = 51.5 bits (124), Expect = 8e-08
 Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 23/130 (17%)

Query: 36  SRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLA 95
                    +   E E   RI+T   +LD +LGGG+    V  IGG PGIGK+ L +Q+A
Sbjct: 55  GSEPSKVLKLSDIELEEEPRISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVA 114

Query: 96  VNVQIPVEFGGLGGKAIYI------------GKCLGFYTEQSAVINY--LDKFVSEHKDV 141
             +          GK +Y+               LG  T    ++    L+  ++E +  
Sbjct: 115 ARL-------AKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQE 167

Query: 142 K--VVIIDSI 149
           K  +V+IDSI
Sbjct: 168 KPDLVVIDSI 177

Length = 456

>gnl|CDD|222165 pfam13481, AAA_25, AAA domain

 Score = 47.3 bits (113), Expect = 6e-07
 Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 7/114 (6%)

Query: 42  AWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIP 101
           A +  +    S   +      L  ++ G +    +T + G PG GK+ L + LA  V   
Sbjct: 1   AAEPSELLPSSAEDLDAPPPPLRWLVKGLLPRGGLTLLAGAPGTGKSTLALDLAAAVATG 60

Query: 102 VEFGGLGGKAIYIGKCLGFYTEQSAV-----INYLDKFVSEHKDVKVVIIDSIA 150
             F  LG   +  G+ L    E S       +  L + + E +   +V+ID +A
Sbjct: 61  RPF--LGPFPVEPGRVLYLDGEDSEAGLRRRLRALGEALEEIEGPDLVVIDPLA 112

This AAA domain is found in a wide variety of presumed DNA repair proteins. Length = 154

>gnl|CDD|236994 PRK11823, PRK11823, DNA repair protein RadA; Provisional

 Score = 47.4 bits (114), Expect = 2e-06
 Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 32/122 (26%)

Query: 49  EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLG 108
           E E   RI+T   +LD +LGGG+    V  IGG PGIGK+ L +Q+A            G
Sbjct: 55  EAEEEPRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAR------LAAAG 108

Query: 109 GKAIYI-------------------GKCLGFYTEQS--AVINYLDKFVSEHKDVKVVIID 147
           GK +Y+                      L    E +  A++  +     E +   +V+ID
Sbjct: 109 GKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATI-----EEEKPDLVVID 163

Query: 148 SI 149
           SI
Sbjct: 164 SI 165

Length = 446

>gnl|CDD|232966 TIGR00416, sms, DNA repair protein RadA

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 21/47 (44%), Positives = 30/47 (63%)

Query: 49  EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLA 95
           E E + R ++   +LD +LGGGI    +  IGG PGIGK+ L +Q+A
Sbjct: 69  ELEEVPRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVA 115

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)) [DNA metabolism, DNA replication, recombination, and repair]. Length = 454

>gnl|CDD|223543 COG0467, RAD55, RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 19/46 (41%), Positives = 22/46 (47%)

Query: 52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
           + RI T    LD ILGGG+    V  I G PG GKT   +Q    
Sbjct: 1  MMERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYE 46

Length = 260

>gnl|CDD|239618 cd03556, L-fucose_isomerase, L-fucose isomerase (FucIase); FucIase converts L-fucose, an aldohexose, to its ketose form, which prepares it for aldol cleavage (similar to the isomerization of glucose during glycolysis)

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 16  LISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSC-ADLDNILGGGIGCR 74
           LI++G  +L     A   D +   +  W++ +E+ ++    T  C A+ +   GGG   R
Sbjct: 384 LINSGAAALDGTGQAKDKDGNPTMKEFWNLTEEDVQACLAATDWCPANREYFRGGGFSSR 443

Query: 75  EVTEIGGVP 83
            +TE G +P
Sbjct: 444 FLTE-GEMP 451

L-fucose (or 6-deoxy-L-galactose) is found in blood group determinants as well as in various oligo- and polysaccharides, and glycosides in mammals, bacteria and plants. Length = 584

>gnl|CDD|219158 pfam06745, KaiC, KaiC

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 18/35 (51%), Positives = 19/35 (54%)

Query: 63 LDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
          LD IL GGI    V  I G PG GKT  G+Q   N
Sbjct: 8  LDEILKGGIPRGRVVLITGGPGTGKTIFGLQFLYN 42

This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria. Length = 231

>gnl|CDD|130161 TIGR01089, fucI, L-fucose isomerase

 Score = 37.2 bits (86), Expect = 0.004
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 16  LISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSC-ADLDNILGGGIGCR 74
           LI++G  +L        ++ +   +  W++ Q+E ++    T  C A  +   GGG   R
Sbjct: 387 LINSGSAALDGSGKQRDAEGNPTMKPHWEITQQEADACLAATEWCPAIHEYFRGGGYSSR 446

Query: 75  EVTEIGGVP 83
            +T+ GGVP
Sbjct: 447 FLTK-GGVP 454

This enzyme catalyzes the first step in fucose metabolism, and has been characterized in Escherichia coli and Bacteroides thetaiotaomicron [Energy metabolism, Sugars]. Length = 587

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	226
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	100.0
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	100.0
PTZ00035	337	Rad51 protein; Provisional	100.0
PLN03186	342	DNA repair protein RAD51 homolog; Provisional	100.0
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	100.0
KOG1434	335	consensus Meiotic recombination protein Dmc1 [Cell	100.0
PF08423	256	Rad51: Rad51; InterPro: IPR013632 This domain is f	100.0
PRK04301	317	radA DNA repair and recombination protein RadA; Va	100.0
TIGR02236	310	recomb_radA DNA repair and recombination protein R	100.0
KOG1564	351	consensus DNA repair protein RHP57 [Replication, r	99.97
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	99.96
COG0468	279	RecA RecA/RadA recombinase [DNA replication, recom	99.95
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	99.95
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	99.94
cd00983	325	recA RecA is a bacterial enzyme which has roles in	99.93
cd01394	218	radB RadB. The archaeal protein radB shares simila	99.93
PRK09354	349	recA recombinase A; Provisional	99.93
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	99.93
COG1066	456	Sms Predicted ATP-dependent serine protease [Postt	99.93
TIGR02237	209	recomb_radB DNA repair and recombination protein R	99.91
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	99.91
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	99.9
PRK11823	446	DNA repair protein RadA; Provisional	99.9
KOG1433	326	consensus DNA repair protein RAD51/RHP55 [Replicat	99.9
PRK09519	790	recA DNA recombination protein RecA; Reviewed	99.9
PHA02542	473	41 41 helicase; Provisional	99.88
TIGR03600	421	phage_DnaB phage replicative helicase, DnaB family	99.87
PF00154	322	RecA: recA bacterial DNA recombination protein; In	99.87
PRK05748	448	replicative DNA helicase; Provisional	99.87
PRK09165	497	replicative DNA helicase; Provisional	99.87
PF03796	259	DnaB_C: DnaB-like helicase C terminal domain; Inte	99.87
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	99.87
TIGR00665	434	DnaB replicative DNA helicase. This model describe	99.87
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	99.87
PRK08006	471	replicative DNA helicase; Provisional	99.87
PRK08760	476	replicative DNA helicase; Provisional	99.86
PRK08506	472	replicative DNA helicase; Provisional	99.86
PRK04328	249	hypothetical protein; Provisional	99.86
PRK05595	444	replicative DNA helicase; Provisional	99.86
PRK07004	460	replicative DNA helicase; Provisional	99.86
PRK06321	472	replicative DNA helicase; Provisional	99.85
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	99.85
PRK08840	464	replicative DNA helicase; Provisional	99.85
PRK06904	472	replicative DNA helicase; Validated	99.84
PRK05636	505	replicative DNA helicase; Provisional	99.84
PRK06749	428	replicative DNA helicase; Provisional	99.84
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	99.83
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	99.83
PRK06067	234	flagellar accessory protein FlaH; Validated	99.82
PRK07773	886	replicative DNA helicase; Validated	99.82
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	99.82
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	99.81
COG0305	435	DnaB Replicative DNA helicase [DNA replication, re	99.81
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	99.81
PRK05973	237	replicative DNA helicase; Provisional	99.8
PRK09302	509	circadian clock protein KaiC; Reviewed	99.79
PRK09302	509	circadian clock protein KaiC; Reviewed	99.78
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	99.77
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	99.74
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	99.73
COG2874	235	FlaH Predicted ATPases involved in biogenesis of a	99.68
PRK08533	230	flagellar accessory protein FlaH; Reviewed	99.67
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	99.65
KOG2859	293	consensus DNA repair protein, member of the recA/R	99.5
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	99.5
COG3598	402	RepA RecA-family ATPase [DNA replication, recombin	99.44
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	99.4
KOG2373	514	consensus Predicted mitochondrial DNA helicase twi	99.18
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.03
smart00382	148	AAA ATPases associated with a variety of cellular	98.95
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	98.92
PF00004	132	AAA: ATPase family associated with various cellula	98.91
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	98.9
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.9
PRK04296	190	thymidine kinase; Provisional	98.88
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	98.87
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	98.85
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	98.84
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.83
PRK08181	269	transposase; Validated	98.81
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.81
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.81
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.8
PRK12377	248	putative replication protein; Provisional	98.8
PF13479	213	AAA_24: AAA domain	98.78
PF13173	128	AAA_14: AAA domain	98.78
PRK06526	254	transposase; Provisional	98.77
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	98.76
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	98.76
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	98.75
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.75
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.73
cd03246	173	ABCC_Protease_Secretion This family represents the	98.73
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.73
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	98.72
PRK08727	233	hypothetical protein; Validated	98.72
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.71
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.71
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.71
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	98.7
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.7
PRK07952	244	DNA replication protein DnaC; Validated	98.69
PRK09183	259	transposase/IS protein; Provisional	98.69
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.69
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	98.69
PRK06921	266	hypothetical protein; Provisional	98.68
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.68
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	98.68
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.68
COG3638	258	ABC-type phosphate/phosphonate transport system, A	98.67
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.67
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.67
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.67
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	98.67
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	98.67
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	98.67
PRK06835	329	DNA replication protein DnaC; Validated	98.66
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.66
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	98.66
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	98.66
COG1127	263	Ttg2A ABC-type transport system involved in resist	98.65
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.65
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	98.65
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	98.65
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	98.65
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.65
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	98.65
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.64
PRK05642	234	DNA replication initiation factor; Validated	98.64
PRK08084	235	DNA replication initiation factor; Provisional	98.64
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	98.64
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.64
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.64
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.64
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.64
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.64
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.63
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	98.63
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	98.63
COG1123	539	ATPase components of various ABC-type transport sy	98.63
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	98.63
COG0410	237	LivF ABC-type branched-chain amino acid transport	98.63
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.63
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	98.63
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.63
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.62
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.62
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	98.62
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	98.61
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	98.61
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.61
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	98.61
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	98.61
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.61
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	98.6
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.6
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	98.6
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.6
PRK08116	268	hypothetical protein; Validated	98.6
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.6
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	98.6
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.6
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	98.6
PF07088	484	GvpD: GvpD gas vesicle protein; InterPro: IPR00978	98.6
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	98.59
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.59
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	98.59
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.59
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	98.59
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.59
PRK06893	229	DNA replication initiation factor; Validated	98.59
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	98.59
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.59
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.59
PRK08939	306	primosomal protein DnaI; Reviewed	98.59
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.59
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.58
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	98.58
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.58
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.58
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.58
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.58
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.58
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	98.57
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.57
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	98.57
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	98.57
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	98.57
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	98.57
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.57
cd03299	235	ABC_ModC_like Archeal protein closely related to M	98.57
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	98.57
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.57
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	98.56
COG1484	254	DnaC DNA replication protein [DNA replication, rec	98.56
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.56
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	98.56
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.55
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.55
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.55
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	98.55
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.55
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	98.55
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.54
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	98.54
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.54
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	98.54
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.54
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	98.54
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.54
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.54
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	98.54
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.53
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.53
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	98.53
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	98.53
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.52
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	98.52
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.52
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.52
PRK10908	222	cell division protein FtsE; Provisional	98.52
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.52
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.51
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	98.51
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	98.51
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.51
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	98.51
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.51
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.51
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	98.5
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	98.5
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.5
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	98.5
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	98.5
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.5
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	98.5
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.49
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	98.49
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.49
COG1123	539	ATPase components of various ABC-type transport sy	98.49
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	98.49
COG2884	223	FtsE Predicted ATPase involved in cell division [C	98.49
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.48
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	98.48
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.48
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.48
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.48
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.47
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.47
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.47
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	98.47
PRK13546	264	teichoic acids export protein ATP-binding subunit;	98.47
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.47
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.46
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	98.46
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	98.46
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.45
COG0411	250	LivG ABC-type branched-chain amino acid transport	98.45
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	98.45
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.45
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	98.44
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.44
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	98.44
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	98.44
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	98.43
PRK03992	389	proteasome-activating nucleotidase; Provisional	98.43
PHA00729	226	NTP-binding motif containing protein	98.43
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	98.43
COG4586	325	ABC-type uncharacterized transport system, ATPase	98.43
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	98.43
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	98.43
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.42
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	98.42
PRK14086	617	dnaA chromosomal replication initiation protein; P	98.42
PRK14087	450	dnaA chromosomal replication initiation protein; P	98.42
PRK08903	227	DnaA regulatory inactivator Hda; Validated	98.42
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	98.42
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	98.42
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	98.42
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	98.42
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	98.41
PRK14088	440	dnaA chromosomal replication initiation protein; P	98.41
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.41
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	98.41
PRK13409	590	putative ATPase RIL; Provisional	98.41
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	98.4
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	98.4
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	98.4
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.39
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.39
CHL00195	489	ycf46 Ycf46; Provisional	98.39
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	98.39
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	98.39
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	98.39
PRK03695	248	vitamin B12-transporter ATPase; Provisional	98.39
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	98.38
COG3854	308	SpoIIIAA ncharacterized protein conserved in bacte	98.38
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	98.38
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	98.38
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	98.38
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	98.38
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.37
PRK12422	445	chromosomal replication initiation protein; Provis	98.37
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	98.37
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	98.37
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	98.36
cd03234	226	ABCG_White The White subfamily represents ABC tran	98.36
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	98.35
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.35
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	98.35
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	98.35
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	98.35
CHL00176	638	ftsH cell division protein; Validated	98.35
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.35
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.35
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	98.35
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	98.35
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	98.35
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.34
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	98.34
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	98.34
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	98.34
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.34
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.33
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	98.33
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	98.33
PRK10522	547	multidrug transporter membrane component/ATP-bindi	98.33
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	98.33
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	98.33
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	98.33
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.33
COG4172	534	ABC-type uncharacterized transport system, duplica	98.32
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	98.32
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	98.32
PRK09984	262	phosphonate/organophosphate ester transporter subu	98.32
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	98.31
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.31
PRK00149	450	dnaA chromosomal replication initiation protein; R	98.31
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	98.3
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	98.3
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	98.3
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	98.3
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	98.29
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	98.29
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.29
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	98.28
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.28
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	98.28
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	98.28
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.28
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	98.27
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	98.27
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	98.27
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	98.27
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	98.27
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	98.27
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.26
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	98.26
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	98.26
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	98.26
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	98.25
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	98.25
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	98.25
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	98.25
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.25
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.25
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	98.25
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	98.25
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	98.24
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.24
PRK10938	490	putative molybdenum transport ATP-binding protein	98.24
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.23
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	98.23
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	98.22
PRK10867	433	signal recognition particle protein; Provisional	98.22
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.21
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	98.21
PRK10416	318	signal recognition particle-docking protein FtsY;	98.21
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	98.2
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	98.2
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.2
COG4172	534	ABC-type uncharacterized transport system, duplica	98.2
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	98.19
COG4598	256	HisP ABC-type histidine transport system, ATPase c	98.19
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.19
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.19
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	98.18
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	98.17
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	98.17
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.17
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	98.17
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	98.17
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	98.17
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	98.16
KOG0736	953	consensus Peroxisome assembly factor 2 containing	98.16
COG4559	259	ABC-type hemin transport system, ATPase component	98.16
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	98.16
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	98.16
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	98.15
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	98.15
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	98.15
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.15
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	98.15
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.15
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.15
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	98.14
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	98.14
PLN03130	1622	ABC transporter C family member; Provisional	98.14
COG4181	228	Predicted ABC-type transport system involved in ly	98.14
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.14
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	98.13
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	98.13
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	98.13
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.13
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	98.12
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	98.12
COG4152	300	ABC-type uncharacterized transport system, ATPase	98.12
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.12
CHL00181	287	cbbX CbbX; Provisional	98.12
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	98.11
PLN03232	1495	ABC transporter C family member; Provisional	98.11
COG4988	559	CydD ABC-type transport system involved in cytochr	98.1
PF05729	166	NACHT: NACHT domain	98.1
PLN03211	659	ABC transporter G-25; Provisional	98.1
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	98.1
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	98.09
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	98.09
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	98.08
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	98.08
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.08
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.08
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	98.08
cd03239	178	ABC_SMC_head The structural maintenance of chromos	98.08
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	98.07
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	98.07
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.07
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	98.07
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	98.06
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	98.06
PRK13409	590	putative ATPase RIL; Provisional	98.06
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	98.06
COG0488	530	Uup ATPase components of ABC transporters with dup	98.06
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	98.06
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	98.06
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	98.05
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	98.05
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	98.05
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	98.05
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	98.05
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	98.05
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	98.05
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	98.05
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	98.04
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.04
PRK00411	394	cdc6 cell division control protein 6; Reviewed	98.04
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	98.04
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.04
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.03
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	98.03
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.03
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	98.03
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	98.03
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	98.03
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	98.03
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.03
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	98.03
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.03
PF00005	137	ABC_tran: ABC transporter This structure is on hol	98.03
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	98.03
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	98.03
PTZ00243	1560	ABC transporter; Provisional	98.02
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	98.02
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	98.02
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	98.02
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	98.02
PRK11147	635	ABC transporter ATPase component; Reviewed	98.02
PRK14974	336	cell division protein FtsY; Provisional	98.01
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	98.01
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.01
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	98.01
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	98.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	98.0
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.0
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	98.0
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	97.99
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	97.99
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	97.99
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	97.98
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	97.98
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	97.98
PRK04195	482	replication factor C large subunit; Provisional	97.98
KOG0726	440	consensus 26S proteasome regulatory complex, ATPas	97.97
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	97.96
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	97.96
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	97.96
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	97.96
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	97.96
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.96
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	97.96
COG0593	408	DnaA ATPase involved in DNA replication initiation	97.95

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=100.00  E-value=2.7e-40  Score=283.31  Aligned_cols=193  Identities=32%  Similarity=0.454  Sum_probs=167.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhh----------------------chHhHHHHHHHhhcccCceecCc
Q 036464            3 VSKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQESLARITTSC   60 (226)
Q Consensus         3 ~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----------------------~~~~a~~l~~~~~~~~~~i~Tg~   60 (226)
                      |..++|++.+++||+++||+|++|++.+++.+|.+                      .+.+|.++++++ +...+++||+
T Consensus         4 ~~~~g~~~~~~~~L~~~g~~t~~~~~~~~~~~L~~~~gls~~~~~~i~~~~~~~~~~~~~ta~~~~~~~-~~~~~isTG~   82 (313)
T TIGR02238         4 LQAHGINAADIKKLKSAGICTVNGVIMTTRRALCKIKGLSEAKVDKIKEAASKIINPGFITAFEISQKR-KKVLKITTGS   82 (313)
T ss_pred             hhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCCHHHHHHHHHHHHhhhcccCccHHHHHHhh-ccCceeCCCC
Confidence            55677999999999999999999999999999987                      467888888776 6788999999


Q ss_pred             hhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc---------------------
Q 036464           61 ADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG---------------------  119 (226)
Q Consensus        61 ~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~---------------------  119 (226)
                      +.||++|+||+++|++++|+|+||+|||+||+|++.++++|.+.++.+++|+|||+|..                     
T Consensus        83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l  162 (313)
T TIGR02238        83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVL  162 (313)
T ss_pred             HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhc
Confidence            99999999999999999999999999999999999999999888888899999998841                     


Q ss_pred             ---------CchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHHHHcCCEEEE
Q 036464          120 ---------FYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLE  187 (226)
Q Consensus       120 ---------~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la~~~~~~vi~  187 (226)
                               +..++++.+..+...+.+. ++++|||||++++++.++.   +...|++.+.+++..|+++|+++|++||+
T Consensus       163 ~~i~~~~~~~~e~~~~~l~~l~~~i~~~-~~~LvVIDSisal~r~~~~~~g~~~~r~~~l~~~~~~L~~la~~~~vavvi  241 (313)
T TIGR02238       163 DNILYARAYTSEHQMELLDYLAAKFSEE-PFRLLIVDSIMALFRVDFSGRGELSERQQKLAQMLSRLNKISEEFNVAVFV  241 (313)
T ss_pred             CcEEEecCCCHHHHHHHHHHHHHHhhcc-CCCEEEEEcchHhhhhhccCccchHHHHHHHHHHHHHHHHHHHHcCcEEEE
Confidence                     1223334455555556554 7999999999999988665   36678888999999999999999999999


Q ss_pred             eccccccCCC
Q 036464          188 PNLATTANLA  197 (226)
Q Consensus       188 ~nq~~~~~~~  197 (226)
                      |||++++++.
T Consensus       242 tNqv~~~~~~  251 (313)
T TIGR02238       242 TNQVQADPGA  251 (313)
T ss_pred             ECceEecCCc
Confidence            9999998764

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=100.00  E-value=2e-40  Score=286.19  Aligned_cols=194  Identities=31%  Similarity=0.409  Sum_probs=168.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhh----------------------chHhHHHHHHHhhcccCceecCc
Q 036464            3 VSKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQESLARITTSC   60 (226)
Q Consensus         3 ~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----------------------~~~~a~~l~~~~~~~~~~i~Tg~   60 (226)
                      |..++|++.+++||+++||+|++|++.+++.+|++                      .+.+|.++++++ +...+++||+
T Consensus        34 l~~~g~~~~~~~kL~~~g~~tv~~~~~~~~~~L~~~~g~s~~~~~ki~~~a~~~~~~~~~ta~~~~~~~-~~~~~isTG~  112 (344)
T PLN03187         34 LISQGINAGDVKKLQDAGIYTCNGLMMHTKKNLTGIKGLSEAKVDKICEAAEKLLNQGFITGSDALLKR-KSVVRITTGS  112 (344)
T ss_pred             HhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCCHHHHHHHHHHHHHhhcccCCcHHHHHhhh-ccCceecCCc
Confidence            44567999999999999999999999999999987                      467888988876 6788999999


Q ss_pred             hhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc----------------------
Q 036464           61 ADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL----------------------  118 (226)
Q Consensus        61 ~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~----------------------  118 (226)
                      +.||++|+||++.|++++|+|+||+||||||+|+|.++++|.+.++.+++|+|||+|.                      
T Consensus       113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l  192 (344)
T PLN03187        113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVL  192 (344)
T ss_pred             HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhc
Confidence            9999999999999999999999999999999999999999988888889999999874                      


Q ss_pred             --------cCchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHHHHcCCEEEE
Q 036464          119 --------GFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLE  187 (226)
Q Consensus       119 --------~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la~~~~~~vi~  187 (226)
                              ++..++...+..+...+.+. ++++|||||++++++.++.   +...|++.+.+++..|+++|+++|++||+
T Consensus       193 ~~I~~~~~~~~e~~~~~l~~l~~~i~~~-~~~LvVIDSital~r~~~~~rg~l~~rq~~L~~~~~~L~~lA~~~~vavvv  271 (344)
T PLN03187        193 DNIIYARAYTYEHQYNLLLGLAAKMAEE-PFRLLIVDSVIALFRVDFTGRGELAERQQKLAQMLSRLTKIAEEFNVAVYM  271 (344)
T ss_pred             CeEEEecCCCHHHHHHHHHHHHHHHHhc-CCCEEEEeCcHHhhhccccCccchHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence                    11233334455566666654 7999999999999998664   36678888999999999999999999999


Q ss_pred             eccccccCCCC
Q 036464          188 PNLATTANLAE  198 (226)
Q Consensus       188 ~nq~~~~~~~~  198 (226)
                      |||++++++++
T Consensus       272 TNqv~~~~~~~  282 (344)
T PLN03187        272 TNQVIADPGGG  282 (344)
T ss_pred             EecEEEcCCcc
Confidence            99999987653

>PTZ00035 Rad51 protein; Provisional

Probab=100.00  E-value=1.6e-38  Score=275.07  Aligned_cols=192  Identities=31%  Similarity=0.411  Sum_probs=165.9

Q ss_pred             CCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhh----------------------chHhHHHHHHHhhcccCceecCch
Q 036464            4 SKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQESLARITTSCA   61 (226)
Q Consensus         4 ~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----------------------~~~~a~~l~~~~~~~~~~i~Tg~~   61 (226)
                      ...+|++.+++||+++||+|++|++.+++.+|++                      .+.+|.++++++ .+..+++||++
T Consensus        27 ~~~g~~~~~~~kL~~~g~~t~~~~~~~~~~~L~~~~gis~~~~~~i~~~~~~~~~~~~~ta~~~~~~~-~~~~~isTG~~  105 (337)
T PTZ00035         27 QSAGINAADIKKLKEAGICTVESVAYATKKDLCNIKGISEAKVEKIKEAASKLVPMGFISATEYLEAR-KNIIRITTGST  105 (337)
T ss_pred             hcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCCCHHHHHHHHHHHHHhcccCCCCHHHHHHhh-ccCccccCCcH
Confidence            3455999999999999999999999999999987                      467889998876 67889999999


Q ss_pred             hHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc----------------------
Q 036464           62 DLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG----------------------  119 (226)
Q Consensus        62 ~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~----------------------  119 (226)
                      .||++|+||+++|++++|+|+||+|||+||++++..+.+|.+.++.+++|+|||+|..                      
T Consensus       106 ~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~  185 (337)
T PTZ00035        106 QLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLD  185 (337)
T ss_pred             HHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhh
Confidence            9999999999999999999999999999999999999988888888899999998741                      


Q ss_pred             --------CchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Q 036464          120 --------FYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEP  188 (226)
Q Consensus       120 --------~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la~~~~~~vi~~  188 (226)
                              +..+++..+..+...+.+ .++++|||||++++++.++.   +...|++.+.+++..|+++|+++|++||+|
T Consensus       186 nI~~~~~~~~e~~~~~l~~~~~~l~~-~~~~lvVIDSital~r~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~vavvvt  264 (337)
T PTZ00035        186 NIAYARAYNHEHQMQLLSQAAAKMAE-ERFALLIVDSATALFRVDYSGRGELAERQQHLGKFLRALQKLADEFNVAVVIT  264 (337)
T ss_pred             ceEEEccCCHHHHHHHHHHHHHHhhc-cCccEEEEECcHHhhhhhccCcccHHHHHHHHHHHHHHHHHHHHHcCcEEEEe
Confidence                    112333344455555554 48999999999999988665   466788889999999999999999999999


Q ss_pred             ccccccCCC
Q 036464          189 NLATTANLA  197 (226)
Q Consensus       189 nq~~~~~~~  197 (226)
                      ||+++++++
T Consensus       265 Nqv~~~~~~  273 (337)
T PTZ00035        265 NQVMADVDG  273 (337)
T ss_pred             cceEEecCC
Confidence            999998764

>PLN03186 DNA repair protein RAD51 homolog; Provisional

Probab=100.00  E-value=5.8e-38  Score=271.15  Aligned_cols=212  Identities=29%  Similarity=0.365  Sum_probs=170.6

Q ss_pred             CCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhh----------------------chHhHHHHHHHhhcccCceecCch
Q 036464            4 SKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQESLARITTSCA   61 (226)
Q Consensus         4 ~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----------------------~~~~a~~l~~~~~~~~~~i~Tg~~   61 (226)
                      ..++|++.+++||+++||.|++|++.+++.+|++                      .+.+|.++++++ ....+++||++
T Consensus        32 ~~~gi~~~~i~kL~~~g~~T~~~~~~~~~~~L~~i~~is~~~~~~~~~~~~~~~~~~~~ta~~~~~~~-~~~~~i~tG~~  110 (342)
T PLN03186         32 QASGIAALDIKKLKDAGIHTVESLAYAPKKDLLQIKGISEAKVEKILEAASKLVPLGFTTASQLHAQR-QEIIQITTGSR  110 (342)
T ss_pred             HhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhcCCCHHHHHHHHHHHHHhcccccchHHHHhhcc-cCcceeCCCCH
Confidence            4456999999999999999999999999999987                      345666776665 56789999999


Q ss_pred             hHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc----------------------
Q 036464           62 DLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG----------------------  119 (226)
Q Consensus        62 ~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~----------------------  119 (226)
                      .||++|+||+++|++++|+|+||+|||+||+++|.++++|...++.+++|+|||+|..                      
T Consensus       111 ~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~  190 (342)
T PLN03186        111 ELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLE  190 (342)
T ss_pred             HHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhcc
Confidence            9999999999999999999999999999999999999988877777789999998841                      


Q ss_pred             --------CchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Q 036464          120 --------FYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEP  188 (226)
Q Consensus       120 --------~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la~~~~~~vi~~  188 (226)
                              +..++...+..+...+.+ .++++|||||++++++.++.   +...|++.+.+++..|+++|+++|++||+|
T Consensus       191 ~i~~~~~~~~e~~~~ll~~~~~~~~~-~~~~LIVIDSI~alfr~~~~~~g~l~~r~~~L~~~l~~L~~lA~~~~vaVviT  269 (342)
T PLN03186        191 NVAYARAYNTDHQSELLLEAASMMAE-TRFALMIVDSATALYRTEFSGRGELSARQMHLGKFLRSLQRLADEFGVAVVIT  269 (342)
T ss_pred             ceEEEecCCHHHHHHHHHHHHHHhhc-cCCCEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence                    112233344445455554 48999999999999987654   356777889999999999999999999999


Q ss_pred             ccccccCCCCC--CcCCcCCCCchhHHHHHh
Q 036464          189 NLATTANLAES--CLTCLRDSGSRKAVAAAA  217 (226)
Q Consensus       189 nq~~~~~~~~~--~~~~~~~sg~~~~~~~~~  217 (226)
                      ||++.++++..  ..+...+.|...+...++
T Consensus       270 Nqv~~~~~~~~~~~~~~~~P~gG~~~~h~~~  300 (342)
T PLN03186        270 NQVVAQVDGSAFFAGPQLKPIGGNIMAHAST  300 (342)
T ss_pred             cCEEEccCCccccCCCccccchhHHHHhhcc
Confidence            99998887632  223335555554544443

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=100.00  E-value=1.5e-37  Score=266.97  Aligned_cols=214  Identities=29%  Similarity=0.365  Sum_probs=171.8

Q ss_pred             CCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhh----------------------chHhHHHHHHHhhcccCceecC
Q 036464            2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQESLARITTS   59 (226)
Q Consensus         2 ~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----------------------~~~~a~~l~~~~~~~~~~i~Tg   59 (226)
                      .|..++|++.+++||+++||+|++|++.+++.+|++                      .+.+|.++++++ ....+++||
T Consensus         3 ~~~~~~~~~~~~~~l~~~g~~t~~~~~~~~~~~L~~i~~ls~~~~~~~~~~~~~~~~~~~~t~~~l~~~~-~~~~~~~tg   81 (316)
T TIGR02239         3 KLEGNGITAADIKKLQEAGLHTVESVAYAPKKQLLEIKGISEAKADKILAEAAKLVPMGFTTATEFHQRR-QEVIQLTTG   81 (316)
T ss_pred             hhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHhcccccccHHHHHhcc-cccceeCCC
Confidence            467788999999999999999999999999999987                      345677776655 567899999


Q ss_pred             chhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc--------------------
Q 036464           60 CADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--------------------  119 (226)
Q Consensus        60 ~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--------------------  119 (226)
                      ++.||.+|+||+++|++++|+|+||+|||+||++++.++++|...++.+++|+|||+|..                    
T Consensus        82 ~~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~  161 (316)
T TIGR02239        82 SKELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDV  161 (316)
T ss_pred             CHHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHh
Confidence            999999999999999999999999999999999999999888777777789999998741                    


Q ss_pred             ----------CchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHHHHcCCEEE
Q 036464          120 ----------FYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALL  186 (226)
Q Consensus       120 ----------~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la~~~~~~vi  186 (226)
                                +..++...++.+...+.+ .++++|||||++++|+.++.   +...|+..+.+++..|+++|++++++||
T Consensus       162 l~~i~~~~~~~~~~~~~~l~~~~~~~~~-~~~~LvVIDSI~al~r~~~~~~~~~~~rq~~l~~~~~~L~~la~~~~vavv  240 (316)
T TIGR02239       162 LDNVAYARAYNTDHQLQLLQQAAAMMSE-SRFALLIVDSATALYRTDFSGRGELSARQMHLARFLRSLQRLADEFGVAVV  240 (316)
T ss_pred             hccEEEEecCChHHHHHHHHHHHHhhcc-CCccEEEEECcHHHhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence                      112222334444455544 48999999999999987664   3456778889999999999999999999


Q ss_pred             EeccccccCCCCC--C-cCCcCCCCchhHHHHHh
Q 036464          187 EPNLATTANLAES--C-LTCLRDSGSRKAVAAAA  217 (226)
Q Consensus       187 ~~nq~~~~~~~~~--~-~~~~~~sg~~~~~~~~~  217 (226)
                      +|||++.++++..  + ....++.|...+.+.++
T Consensus       241 ~tNqv~~~~~~~~~~~~g~~~~p~gG~~~~h~~~  274 (316)
T TIGR02239       241 ITNQVVAQVDGAGSMFAGDPKKPIGGNIMAHAST  274 (316)
T ss_pred             EECceEEecCCccccccCCCCcCCchHHHHhhcc
Confidence            9999998887541  1 22345566555544443

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>KOG1434 consensus Meiotic recombination protein Dmc1 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=100.00  E-value=4.1e-39  Score=260.61  Aligned_cols=190  Identities=37%  Similarity=0.520  Sum_probs=174.1

Q ss_pred             CCHHHHHHHHhCCCccHHHHHhCChhHHhh----------------------chHhHHHHHHHhhcccCceecCchhHHH
Q 036464            8 ISATQRGKLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQESLARITTSCADLDN   65 (226)
Q Consensus         8 l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----------------------~~~~a~~l~~~~~~~~~~i~Tg~~~LD~   65 (226)
                      +....+.||+..|++|++.++-.+.+-|..                      ++.+|+++++++ +...+|+||++.||.
T Consensus        28 i~~td~~kLk~~gi~tikgv~ist~r~l~~lkgise~kv~klkeaa~k~~~~~f~tA~e~le~r-~~v~~ItTgs~~lD~  106 (335)
T KOG1434|consen   28 INVTDIEKLKSKGICTIKGVLISTRRALCKLKGISEVKVDKLKEAANKSISHGFCTALELLEQR-KTVGSITTGSSALDD  106 (335)
T ss_pred             cchhhHHhhccCCeeeEeeeeehhHHHHHHHhhHHHHhhhhHHHhhCCccCcCcchHHHHHhhh-hccceeecchHHHhh
Confidence            445667888889988888877766544333                      678999999998 788999999999999


Q ss_pred             hhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---------------------------
Q 036464           66 ILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---------------------------  118 (226)
Q Consensus        66 ~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---------------------------  118 (226)
                      +|||||+.-+++|++|.||+||||+++++|..+++|.++|+.+++++|||+|.                           
T Consensus       107 ILGGGI~~m~iTEifGefr~GKTQlshtLcVt~QlPr~~Gg~~Gk~ifIDTEgtFrpdRi~~IAe~~~~d~d~~LdNI~y  186 (335)
T KOG1434|consen  107 ILGGGIPSMSITEIFGEFRCGKTQLSHTLCVTVQLPREMGGVGGKAIFIDTEGTFRPDRIKDIAERFKVDPDFTLDNILY  186 (335)
T ss_pred             hhcCCccchhhHHHcCCCCcCccceeeEEEEEeecchhhCCCCceEEEEecCCccchHHHHHHHHHhCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999883                           


Q ss_pred             ---cCchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          119 ---GFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       119 ---~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                         +++.+|+++++.+.++++++.++++||||||+++||.+++   ++++|++.+++++.+|.++|+++|++|++|||++
T Consensus       187 ~Ra~~se~qmelv~~L~~~~se~g~~rlvIVDsIma~FRvDy~grgeLseRqqkLn~ml~kl~~laeefnvAVfltNQvt  266 (335)
T KOG1434|consen  187 FRAYNSEEQMELVYLLGDFLSEHGKYRLVIVDSIMALFRVDYDGRGELSERQQKLNQMLQKLNKLAEEFNVAVFLTNQVT  266 (335)
T ss_pred             HHHcChHHHHHHHHHHHHHHhhcCcEEEEEEeceehheeecccccccHHHHHHHHHHHHHHHHHHHHhccEEEEEeccee
Confidence               6788999999999999999889999999999999999998   8999999999999999999999999999999999


Q ss_pred             ccCCCC
Q 036464          193 TANLAE  198 (226)
Q Consensus       193 ~~~~~~  198 (226)
                      ++++.+
T Consensus       267 tdpga~  272 (335)
T KOG1434|consen  267 TDPGAG  272 (335)
T ss_pred             cCCccc
Confidence            998874

>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51

Probab=100.00  E-value=4.9e-36  Score=250.91  Aligned_cols=176  Identities=43%  Similarity=0.579  Sum_probs=142.6

Q ss_pred             chHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           38 GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        38 ~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      +|+||.++++++ +...+|+||++.||.+|+||++.|.++||+|+||+|||+||+|+|.++++|.+.++.+++|+|||+|
T Consensus         3 ~f~ta~~~~~~~-~~~~~i~Tg~~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe   81 (256)
T PF08423_consen    3 GFQTAAELLEQR-KRWSRISTGCKSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTE   81 (256)
T ss_dssp             SSEEHHHHHHHH-HTS-EE--SSHHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESS
T ss_pred             CcccHHHHHHHh-hcCCeeCCCCHHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCC
Confidence            468999999887 6889999999999999999999999999999999999999999999999999888899999999988


Q ss_pred             c------------------------------cCchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHH
Q 036464          118 L------------------------------GFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRT  164 (226)
Q Consensus       118 ~------------------------------~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~  164 (226)
                      .                              ++..++...++.+...+.+. +++||||||++++|+.++.   +...|.
T Consensus        82 ~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~-~ikLIVIDSIaalfr~e~~~~~~~~~R~  160 (256)
T PF08423_consen   82 GTFSPERLQQIAERFGLDPEEILDNIFVIRVFDLEELLELLEQLPKLLSES-KIKLIVIDSIAALFRSEFSGRGDLAERQ  160 (256)
T ss_dssp             SSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-SSHHHHHHHHHHHHHHHHHS-CEEEEEEETSSHHHHHHSGSTTTHHHHH
T ss_pred             CCCCHHHHHHHhhccccccchhhhceeeeecCCHHHHHHHHHHHHhhcccc-ceEEEEecchHHHHHHHHccchhhHHHH
Confidence            4                              23344455667777777664 8999999999999998764   577899


Q ss_pred             HHHHHHHHHHHHHHHHcCCEEEEeccccccCCCCCC--cCCcCCCCchhHHHH
Q 036464          165 RVLSGIALKLMNLAKKFSLALLEPNLATTANLAESC--LTCLRDSGSRKAVAA  215 (226)
Q Consensus       165 ~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~~--~~~~~~sg~~~~~~~  215 (226)
                      +.+.+++..|+++|++++++||+|||+++++++...  ....++.+...+...
T Consensus       161 ~~L~~~~~~L~~lA~~~~iaVvvTNqv~~~~~~~~~~~~~~~~PalG~~w~h~  213 (256)
T PF08423_consen  161 RMLARLARILKRLARKYNIAVVVTNQVTTKIDSNSLFDGDRLKPALGHSWSHA  213 (256)
T ss_dssp             HHHHHHHHHHHHHHHHTT-EEEEEEEECSSTT----SSTTSEEETTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCceEEeeceeeecCCcccccccccceecCcchhhhh
Confidence            999999999999999999999999999998887521  123344554444433

It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=100.00  E-value=6.5e-35  Score=251.57  Aligned_cols=196  Identities=36%  Similarity=0.546  Sum_probs=162.6

Q ss_pred             CCCCCC-CCHHHHHHHHhCCCccHHHHHhCChhHHhh--c---------------------hHhHHHHHHHhhcccCcee
Q 036464            2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR--G---------------------TQTAWDMLQEEQESLARIT   57 (226)
Q Consensus         2 ~~~~l~-l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~--~---------------------~~~a~~l~~~~~~~~~~i~   57 (226)
                      ||+++| +++.+.++|.++||.|++|++.+++.+|.+  +                     +.++.++++++ ++..+++
T Consensus         7 ~l~~l~gIg~~~a~~L~~~Gi~t~~dl~~~~~~~L~~~~g~~~~~a~~l~~~a~~~~~~~~~~t~~~l~~~~-ks~~~~~   85 (317)
T PRK04301          7 DLEDLPGVGPATAEKLREAGYDTVEAIAVASPKELSEAAGIGESTAAKIIEAAREAADIGGFETALEVLERR-KNVGKIT   85 (317)
T ss_pred             cHhhcCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHHhcCCCHHHHHHHHHHHHHhhccccCccHHHHHHhh-ccCCccC
Confidence            788998 999999999999999999999999999876  1                     13444554444 5677899


Q ss_pred             cCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc------------------
Q 036464           58 TSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG------------------  119 (226)
Q Consensus        58 Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~------------------  119 (226)
                      ||++.||.+|+||+++|.+++|+|+||+|||+||+|++.++++|.+.++.+++|+|||+|..                  
T Consensus        86 Tg~~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~  165 (317)
T PRK04301         86 TGSKELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPD  165 (317)
T ss_pred             CCCHHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChH
Confidence            99999999999999999999999999999999999999999988877777889999998741                  


Q ss_pred             ------------CchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHHHHcCCE
Q 036464          120 ------------FYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLA  184 (226)
Q Consensus       120 ------------~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la~~~~~~  184 (226)
                                  ...++...++.+..++.+..++++|||||++++++.++.   +...|++.+.+++..|+++|+++|++
T Consensus       166 ~~l~~i~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~va  245 (317)
T PRK04301        166 EVLDNIHVARAYNSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFRAEYVGRGNLAERQQKLNKHLHDLLRLADLYNAA  245 (317)
T ss_pred             hhhccEEEEeCCCHHHHHHHHHHHHHHHhccCceeEEEEECchHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence                        112223345566666665358999999999999887554   35567777889999999999999999


Q ss_pred             EEEeccccccCCCC
Q 036464          185 LLEPNLATTANLAE  198 (226)
Q Consensus       185 vi~~nq~~~~~~~~  198 (226)
                      ||+|||++++++..
T Consensus       246 vl~tnqv~~~~~~~  259 (317)
T PRK04301        246 VVVTNQVMARPDAF  259 (317)
T ss_pred             EEEeceEEeccccc
Confidence            99999999876543

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=100.00  E-value=2.9e-34  Score=246.85  Aligned_cols=194  Identities=38%  Similarity=0.579  Sum_probs=160.6

Q ss_pred             CCCCC-CCHHHHHHHHhCCCccHHHHHhCChhHHhh-----------------------chHhHHHHHHHhhcccCceec
Q 036464            3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR-----------------------GTQTAWDMLQEEQESLARITT   58 (226)
Q Consensus         3 ~~~l~-l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~-----------------------~~~~a~~l~~~~~~~~~~i~T   58 (226)
                      |+++| +++.+.++|.++||.|++|++.+++.+|.+                       .+.++.++++++ +...+++|
T Consensus         1 l~~i~gig~~~~~~L~~~Gi~ti~dl~~~~~~~L~~~~g~~~~~a~~l~~~~~~~~~~~~~~t~~~~~~~~-~s~~~~~T   79 (310)
T TIGR02236         1 LEDLPGVGPATAEKLREAGYDTFEAIAVASPKELSEIAGISEGTAAKIIQAARKAADLGGFETADDVLERR-KTIGKITT   79 (310)
T ss_pred             CcccCCCCHHHHHHHHHcCCCCHHHHHcCCHHHHHhccCCCHHHHHHHHHHHHHHhhccCCCCHHHHHHhh-ccCCeecC
Confidence            46778 999999999999999999999999999876                       123455555553 56788999


Q ss_pred             CchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc-----------------
Q 036464           59 SCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY-----------------  121 (226)
Q Consensus        59 g~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~-----------------  121 (226)
                      |++.+|.+|+||++.|.+++|+|+||+|||+||+|+|.++++|.+.++.+++|+|||+|....                 
T Consensus        80 g~~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~~~gl~~~~  159 (310)
T TIGR02236        80 GSKELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAEARGLDPDE  159 (310)
T ss_pred             CCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHHHcCCCHHH
Confidence            999999999999999999999999999999999999999998877766777999999884111                 


Q ss_pred             -------------hHHHHHHHHHHHHHhhCC-CceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHHHHcCCE
Q 036464          122 -------------TEQSAVINYLDKFVSEHK-DVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLA  184 (226)
Q Consensus       122 -------------~~~~~~l~~l~~~l~~~~-~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la~~~~~~  184 (226)
                                   .+++..++.+.+++.+.. ++++|||||++++++.++.   +...|++.+.+++..|++++++++++
T Consensus       160 ~~~~i~i~~~~~~~~~~~lld~l~~~i~~~~~~~~lVVIDSisa~~r~e~~~~~~~~~r~~~l~~~~~~L~~~a~~~~~~  239 (310)
T TIGR02236       160 VLKNIYVARAYNSNHQMLLVEKAEDLIKELNNPVKLLIVDSLTSHFRAEYVGRGALAERQQKLNKHLHDLLRLADLYNAA  239 (310)
T ss_pred             HhhceEEEecCCHHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhHhhcCchhHHHHHHHHHHHHHHHHHHHHHhCcE
Confidence                         122223456666776643 4899999999999887654   35667788899999999999999999


Q ss_pred             EEEeccccccCCC
Q 036464          185 LLEPNLATTANLA  197 (226)
Q Consensus       185 vi~~nq~~~~~~~  197 (226)
                      ||+|||++++++.
T Consensus       240 v~~tnqv~~~~~~  252 (310)
T TIGR02236       240 VVVTNQVMARPDA  252 (310)
T ss_pred             EEEeceeeecCcc
Confidence            9999999998764

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>KOG1564 consensus DNA repair protein RHP57 [Replication, recombination and repair]

Probab=99.97  E-value=1.3e-31  Score=219.87  Aligned_cols=195  Identities=34%  Similarity=0.430  Sum_probs=153.1

Q ss_pred             CCCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhh-----------c------------hHhHHHHHHHhh---c--c
Q 036464            1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR-----------G------------TQTAWDMLQEEQ---E--S   52 (226)
Q Consensus         1 ~~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~-----------~------------~~~a~~l~~~~~---~--~   52 (226)
                      ||+...-+++.++..-+.+...++++++..+..|+.+           .            ...+.+++++..   .  .
T Consensus         1 Mdl~l~~ln~~i~~dee~a~llsa~evl~vs~vdfltlt~~sl~r~~h~s~~e~lr~~~~li~q~~~~~~e~~~~~s~~~   80 (351)
T KOG1564|consen    1 MDLFLDQLNKHIREDEEQANLLSAEEVLTVSKVDFLTLTQQSLHRIVHKSTPEDLRVLKDLIMQNLKLKPENLCSRSKTN   80 (351)
T ss_pred             CCchhccccHHHHHHHHHhhhcCHHHhcCcCcccceecChhHHHHHHHhccHHHHHHHHHHHHHHHHhcchhhhccccCC
Confidence            8888888999999999999999999888877665544           0            111112222221   1  2


Q ss_pred             cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------
Q 036464           53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-------------  119 (226)
Q Consensus        53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-------------  119 (226)
                      ...++||+..||+.|+|||+.+.+|||+|++|+||||||+|++..+++|.+.|+.+++++||.+|..             
T Consensus        81 ~~~lttgc~~LD~~L~GGi~~~giTEi~GeSg~GKtQL~lQL~L~VQLp~~~GGL~~~~vYI~TE~~fP~rRL~qL~~~~  160 (351)
T KOG1564|consen   81 RSKLTTGCVALDECLRGGIPTDGITEICGESGCGKTQLLLQLSLCVQLPRSHGGLGGGAVYICTESPFPTRRLHQLSHTL  160 (351)
T ss_pred             chhcccccHHHHHHhcCCcccccHHHHhhccCCcHHHHHHHHHHHhhCchhhCCCCCceEEEEcCCCCcHHHHHHHHHhc
Confidence            3469999999999999999999999999999999999999999999999999999999999998840             


Q ss_pred             --------------------------CchHHHHHH-HHHHHHHhhCCCceEEEEcCCchhhhcCcC----ChHHHHHHHH
Q 036464          120 --------------------------FYTEQSAVI-NYLDKFVSEHKDVKVVIIDSIAFHFRHGFV----DLALRTRVLS  168 (226)
Q Consensus       120 --------------------------~~~~~~~~l-~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~----~~~~r~~~l~  168 (226)
                                                +...+...+ ..+..++. .+++++|||||++++||.+++    +...|.+.+.
T Consensus       161 ~~rp~~~~~~~~~~Npgd~IFv~~~~d~d~l~~iv~~qlPiL~~-r~~i~LVIiDSVAa~fR~E~d~~~Sdl~~r~~~l~  239 (351)
T KOG1564|consen  161 PQRPNPEKELNYNDNPGDHIFVENVHDVDHLLHIVNRQLPILLN-RKKIKLVIIDSVAALFRSEFDYNPSDLKKRARHLF  239 (351)
T ss_pred             ccCCCcchhhhhccCCCceEEEEeccchhhHHHHHhhhccceec-cCcceEEEEehhhHHHHHHhccChhhhhhHHHHHH
Confidence                                      001111111 12223333 347999999999999998876    3457899999


Q ss_pred             HHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464          169 GIALKLMNLAKKFSLALLEPNLATTANL  196 (226)
Q Consensus       169 ~~~~~L~~la~~~~~~vi~~nq~~~~~~  196 (226)
                      ++..+|+.+|.+|+++|+++||+++...
T Consensus       240 rla~~Lr~LA~~~~~aVV~~NQVtd~~~  267 (351)
T KOG1564|consen  240 RLAGKLRQLASKFDLAVVCANQVTDRVE  267 (351)
T ss_pred             HHHHHHHHHHHhcCccEEEeeccccccc
Confidence            9999999999999999999999998744

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=99.96  E-value=3.8e-28  Score=200.67  Aligned_cols=142  Identities=41%  Similarity=0.568  Sum_probs=118.0

Q ss_pred             eecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC---------------
Q 036464           56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF---------------  120 (226)
Q Consensus        56 i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~---------------  120 (226)
                      ++||++.||.+|+||+++|++++|+|+||+|||+||++++.+.+.|..+++.+++|+||++|...               
T Consensus         1 ~~tG~~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~   80 (235)
T cd01123           1 LTTGSKALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLD   80 (235)
T ss_pred             CCCCchhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccC
Confidence            58999999999999999999999999999999999999999988777777778999999987410               


Q ss_pred             ---------------chHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCC---hHHHHHHHHHHHHHHHHHHHHcC
Q 036464          121 ---------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVD---LALRTRVLSGIALKLMNLAKKFS  182 (226)
Q Consensus       121 ---------------~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~---~~~r~~~l~~~~~~L~~la~~~~  182 (226)
                                     ..+....++.+...+.+.+++++|||||++++++..+..   ...|.+.+.+++..|+++|++++
T Consensus        81 ~~~~~~~i~~~~~~~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~~~~~~~~~~~~r~~~l~~~~~~L~~la~~~~  160 (235)
T cd01123          81 PEEVLDNIYVARAYNSDHQLQLLEELEAILIESSRIKLVIVDSVTALFRAEFDGRGELAERQQHLAKLLRTLKRLADEFN  160 (235)
T ss_pred             hHhHhcCEEEEecCCHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhC
Confidence                           111223445666666665589999999999988754432   36788889999999999999999


Q ss_pred             CEEEEeccccccCCC
Q 036464          183 LALLEPNLATTANLA  197 (226)
Q Consensus       183 ~~vi~~nq~~~~~~~  197 (226)
                      ++||+|||+++..+.
T Consensus       161 ~avl~tn~~~~~~~~  175 (235)
T cd01123         161 VAVVITNQVTARPDG  175 (235)
T ss_pred             CEEEEeccEeecCCc
Confidence            999999999987654

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]

Probab=99.95  E-value=2.3e-27  Score=199.02  Aligned_cols=152  Identities=31%  Similarity=0.370  Sum_probs=127.3

Q ss_pred             cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc------------
Q 036464           51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL------------  118 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~------------  118 (226)
                      +....|+||+..||.+|+||+|.|.+++|+||+|+||||+|+|++.++++      .+++|+|||+|.            
T Consensus        37 ~~~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~------~g~~a~fIDtE~~l~p~r~~~l~~  110 (279)
T COG0468          37 EDIEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQK------PGGKAAFIDTEHALDPERAKQLGV  110 (279)
T ss_pred             hccccccccchhHHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhc------CCCeEEEEeCCCCCCHHHHHHHHH
Confidence            55899999999999999999999999999999999999999999999984      567999999984            


Q ss_pred             -----------cCchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHHHHcCCE
Q 036464          119 -----------GFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLA  184 (226)
Q Consensus       119 -----------~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la~~~~~~  184 (226)
                                 ++..+|+..++.+.....+  ++++|||||++++++.++.   ....+++.+.+.++.|.++++++|++
T Consensus       111 ~~~d~l~v~~~~~~e~q~~i~~~~~~~~~~--~i~LvVVDSvaa~~r~~~~~d~~~~~~~r~ls~~l~~L~~~a~~~~~~  188 (279)
T COG0468         111 DLLDNLLVSQPDTGEQQLEIAEKLARSGAE--KIDLLVVDSVAALVRAEEIEDGHLGLRARLLSKALRKLTRLANKYNTA  188 (279)
T ss_pred             hhhcceeEecCCCHHHHHHHHHHHHHhccC--CCCEEEEecCcccchhhhcCcchHHHHHHHHHHHHHHHHHHHHHcCcE
Confidence                       2233444445555555544  6999999999999998764   37789999999999999999999999


Q ss_pred             EEEeccccccCCCCCCcCCcCCCCch
Q 036464          185 LLEPNLATTANLAESCLTCLRDSGSR  210 (226)
Q Consensus       185 vi~~nq~~~~~~~~~~~~~~~~sg~~  210 (226)
                      |++|||+..+++.....+.....|.+
T Consensus       189 vi~~NQv~~k~~~~f~~~~~~~GG~~  214 (279)
T COG0468         189 VIFTNQVRAKIGVMFGDPETTTGGNA  214 (279)
T ss_pred             EEEECceeeecCcccCCcccCCCchH
Confidence            99999999999887655444444443

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=99.95  E-value=1.3e-26  Score=190.44  Aligned_cols=142  Identities=42%  Similarity=0.599  Sum_probs=112.1

Q ss_pred             eecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCch-------------
Q 036464           56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYT-------------  122 (226)
Q Consensus        56 i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~-------------  122 (226)
                      ++||++.||++|+||+++|++++|+|+||+|||+||++++.+.+.+.++++.+.+|+||++|.....             
T Consensus         1 i~tG~~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~   80 (226)
T cd01393           1 ISTGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLD   80 (226)
T ss_pred             CCCCcHHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccc
Confidence            5899999999999999999999999999999999999999998866555566799999998741111             


Q ss_pred             -----------------HHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCC---hHHHHHHHHHHHHHHHHHHHHcC
Q 036464          123 -----------------EQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVD---LALRTRVLSGIALKLMNLAKKFS  182 (226)
Q Consensus       123 -----------------~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~---~~~r~~~l~~~~~~L~~la~~~~  182 (226)
                                       +....++.+.+.+. ..++++|||||++++++.....   ...|.+.+.+++..|++++++++
T Consensus        81 ~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~-~~~~~lvVIDsis~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~  159 (226)
T cd01393          81 PEEVLDNIYVARPYNGEQQLEIVEELERIMS-SGRVDLVVVDSVAALFRKEFIGRGMLAERARLLSQALRKLLRLADKFN  159 (226)
T ss_pred             hhhhhccEEEEeCCCHHHHHHHHHHHHHHhh-cCCeeEEEEcCcchhhhhhhcCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence                             11112222222222 3489999999999998765432   35677889999999999999999


Q ss_pred             CEEEEeccccccCCCC
Q 036464          183 LALLEPNLATTANLAE  198 (226)
Q Consensus       183 ~~vi~~nq~~~~~~~~  198 (226)
                      ++||+|||+++..++.
T Consensus       160 ~~vi~tnq~~~~~~~~  175 (226)
T cd01393         160 VAVVFTNQVRAKVDVM  175 (226)
T ss_pred             cEEEEEEEEeeecccc
Confidence            9999999999877643

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=99.94  E-value=1.1e-25  Score=185.04  Aligned_cols=137  Identities=33%  Similarity=0.459  Sum_probs=108.7

Q ss_pred             CceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC-------------
Q 036464           54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF-------------  120 (226)
Q Consensus        54 ~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~-------------  120 (226)
                      ++++||+++||++|+||+++|++++|+|+||+|||+||++++.+++      ..+.+|+||++|...             
T Consensus         3 ~~i~tGi~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~------~~~~~v~yi~~e~~~~~r~~~~~~~~~~   76 (225)
T PRK09361          3 ERLPTGCKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAA------KNGKKVIYIDTEGLSPERFKQIAGEDFE   76 (225)
T ss_pred             ccccCCcHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHH------HCCCeEEEEECCCCCHHHHHHHHhhChH
Confidence            5799999999999999999999999999999999999999999987      467899999998200             


Q ss_pred             -------------chHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCc---CChHHHHHHHHHHHHHHHHHHHHcCCE
Q 036464          121 -------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGF---VDLALRTRVLSGIALKLMNLAKKFSLA  184 (226)
Q Consensus       121 -------------~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~---~~~~~r~~~l~~~~~~L~~la~~~~~~  184 (226)
                                   ..++...++.+..++.  .++++|||||++++++..+   .+...+.+.+.+++..|+++++++|++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~lvVIDsi~al~~~~~~~~~~~~~~~~~l~~~l~~L~~~a~~~~v~  154 (225)
T PRK09361         77 ELLSNIIIFEPSSFEEQSEAIRKAEKLAK--ENVGLIVLDSATSLYRLELEDEEDNSKLNRELGRQLTHLLKLARKHDLA  154 (225)
T ss_pred             hHhhCeEEEeCCCHHHHHHHHHHHHHHHH--hcccEEEEeCcHHHhHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence                         0011122333444443  4799999999999887542   233455667888888999999999999


Q ss_pred             EEEeccccccCCCC
Q 036464          185 LLEPNLATTANLAE  198 (226)
Q Consensus       185 vi~~nq~~~~~~~~  198 (226)
                      |++|||++...++.
T Consensus       155 vi~tnq~~~~~~~~  168 (225)
T PRK09361        155 VVITNQVYSDIDSD  168 (225)
T ss_pred             EEEEccceecCCCC
Confidence            99999999876643

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=99.93  E-value=1.7e-25  Score=191.57  Aligned_cols=150  Identities=24%  Similarity=0.263  Sum_probs=116.2

Q ss_pred             cccCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc----------
Q 036464           51 ESLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG----------  119 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~----------  119 (226)
                      ....+++||++.||.+|+ ||+|+|.+++|+||||+|||+||++++.+++      ..+++|+|||+|..          
T Consensus        31 ~~~~~isTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~------~~g~~~vyId~E~~~~~~~a~~lG  104 (325)
T cd00983          31 QDVEVIPTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQ------KLGGTVAFIDAEHALDPVYAKKLG  104 (325)
T ss_pred             cCCceecCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH------HcCCCEEEECccccHHHHHHHHcC
Confidence            467899999999999999 9999999999999999999999999999987      47889999998741          


Q ss_pred             -----------CchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhh-cCcCC------hHHHHHHHHHHHHHHHHHHHHc
Q 036464          120 -----------FYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFR-HGFVD------LALRTRVLSGIALKLMNLAKKF  181 (226)
Q Consensus       120 -----------~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~-~~~~~------~~~r~~~l~~~~~~L~~la~~~  181 (226)
                                 ...++  .+..++.++++ ..+++|||||++++++ .+.+.      ...+.+.+.+.++.|..+++++
T Consensus       105 vd~~~l~v~~p~~~eq--~l~i~~~li~s-~~~~lIVIDSvaal~~~~E~~~~~~~~~~~~qaR~l~~~Lr~L~~~~~k~  181 (325)
T cd00983         105 VDLDNLLISQPDTGEQ--ALEIADSLVRS-GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGSINKS  181 (325)
T ss_pred             CCHHHheecCCCCHHH--HHHHHHHHHhc-cCCCEEEEcchHhhcccccccccccccchHHHHHHHHHHHHHHHHHHHhC
Confidence                       11111  24445555655 4899999999999985 34331      1223456788899999999999


Q ss_pred             CCEEEEeccccccCCCCCCcCCcCCCCc
Q 036464          182 SLALLEPNLATTANLAESCLTCLRDSGS  209 (226)
Q Consensus       182 ~~~vi~~nq~~~~~~~~~~~~~~~~sg~  209 (226)
                      ++++|+|||++..++.....+.....|.
T Consensus       182 ~~~vI~tNQvr~~ig~~~g~~e~~~GG~  209 (325)
T cd00983         182 NTTVIFINQLREKIGVMFGNPETTTGGN  209 (325)
T ss_pred             CCEEEEEEccccccccccCCCccCCCch
Confidence            9999999999998765433333333443

RecA couples ATP hydrolysis to DNA strand exchange.

>cd01394 radB RadB

Probab=99.93  E-value=2.3e-25  Score=182.29  Aligned_cols=134  Identities=33%  Similarity=0.460  Sum_probs=105.0

Q ss_pred             eecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC---------------
Q 036464           56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF---------------  120 (226)
Q Consensus        56 i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~---------------  120 (226)
                      ++||++.||.+|+||+++|++++|+|+||+|||+||++++.+.+      ..+++|+||++|...               
T Consensus         1 i~TGi~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~------~~g~~v~yi~~e~~~~~~~~~~~~~~~~~~   74 (218)
T cd01394           1 LPTGCKGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETA------GQGKKVAYIDTEGLSSERFRQIAGDRPERA   74 (218)
T ss_pred             CCcchhHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHH------hcCCeEEEEECCCCCHHHHHHHHhHChHhh
Confidence            58999999999999999999999999999999999999999987      468899999986310               


Q ss_pred             -----------chHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCC---hHHHHHHHHHHHHHHHHHHHHcCCEEE
Q 036464          121 -----------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVD---LALRTRVLSGIALKLMNLAKKFSLALL  186 (226)
Q Consensus       121 -----------~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~---~~~r~~~l~~~~~~L~~la~~~~~~vi  186 (226)
                                 ..++...++.+...++  .++++|||||++++++....+   ...+...+.+++..|+.+|++++++||
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lvvIDsi~~l~~~~~~~~~~~~~~~~~l~~~~~~L~~~a~~~~~~vi  152 (218)
T cd01394          75 ASSIIVFEPMDFNEQGRAIQETETFAD--EKVDLVVVDSATALYRLELGDDDTTIKNYRELAKQLTFLLWLARKHDVAVV  152 (218)
T ss_pred             hcCEEEEeCCCHHHHHHHHHHHHHHHh--cCCcEEEEechHHhhhHHhcCccchHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence                       0111122233333333  248999999999987654432   234556778888899999999999999


Q ss_pred             EeccccccCCC
Q 036464          187 EPNLATTANLA  197 (226)
Q Consensus       187 ~~nq~~~~~~~  197 (226)
                      +|||+++..++
T Consensus       153 ~t~q~~~~~~~  163 (218)
T cd01394         153 ITNQVYSDVGS  163 (218)
T ss_pred             EecCCEEcCCC
Confidence            99999877663

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PRK09354 recA recombinase A; Provisional

Probab=99.93  E-value=2.5e-25  Score=191.92  Aligned_cols=149  Identities=24%  Similarity=0.264  Sum_probs=115.0

Q ss_pred             ccCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-----------
Q 036464           52 SLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-----------  119 (226)
Q Consensus        52 ~~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-----------  119 (226)
                      ...+++||++.||.+|+ ||+|+|++++|+||||+|||+||++++.+++      ..+++|+|||+|..           
T Consensus        37 ~~~~isTGi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~------~~G~~~~yId~E~s~~~~~a~~lGv  110 (349)
T PRK09354         37 DVEVISTGSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQ------KAGGTAAFIDAEHALDPVYAKKLGV  110 (349)
T ss_pred             CCceecCCcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHH------HcCCcEEEECCccchHHHHHHHcCC
Confidence            57899999999999999 9999999999999999999999999999998      57899999998841           


Q ss_pred             ----------CchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhh-cCcCC------hHHHHHHHHHHHHHHHHHHHHcC
Q 036464          120 ----------FYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFR-HGFVD------LALRTRVLSGIALKLMNLAKKFS  182 (226)
Q Consensus       120 ----------~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~-~~~~~------~~~r~~~l~~~~~~L~~la~~~~  182 (226)
                                ...++  .+..+..++++ ..+++|||||++++++ .+++.      ...+.+.+.+.++.|..+++++|
T Consensus       111 dld~lli~qp~~~Eq--~l~i~~~li~s-~~~~lIVIDSvaaL~~~~E~eg~~gd~~~~~qar~ms~~Lr~L~~~l~k~~  187 (349)
T PRK09354        111 DIDNLLVSQPDTGEQ--ALEIADTLVRS-GAVDLIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGNISKSN  187 (349)
T ss_pred             CHHHeEEecCCCHHH--HHHHHHHHhhc-CCCCEEEEeChhhhcchhhhcCCccccchhHHHHHHHHHHHHHHHHHHHcC
Confidence                      11121  24455566655 4899999999999884 33331      12344567788899999999999


Q ss_pred             CEEEEeccccccCCCCCCcCCcCCCCc
Q 036464          183 LALLEPNLATTANLAESCLTCLRDSGS  209 (226)
Q Consensus       183 ~~vi~~nq~~~~~~~~~~~~~~~~sg~  209 (226)
                      +++|+|||++.+++.....+.....|.
T Consensus       188 itvI~tNQvr~~ig~~~g~pe~~~GG~  214 (349)
T PRK09354        188 TTVIFINQIREKIGVMFGNPETTTGGN  214 (349)
T ss_pred             cEEEEEEeeeeccccccCCCCcCCCch
Confidence            999999999998764333333333343

>TIGR02012 tigrfam_recA protein RecA

Probab=99.93  E-value=5.6e-25  Score=188.30  Aligned_cols=151  Identities=23%  Similarity=0.245  Sum_probs=115.8

Q ss_pred             cccCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc----------
Q 036464           51 ESLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG----------  119 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~----------  119 (226)
                      ....++|||++.||.+|+ ||+|+|++++|+||||+|||+||++++.+++      ..+++|+|||+|..          
T Consensus        31 ~~~~~i~TGi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~------~~g~~v~yId~E~~~~~~~a~~lG  104 (321)
T TIGR02012        31 MDVETISTGSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQ------KAGGTAAFIDAEHALDPVYARKLG  104 (321)
T ss_pred             ccCceecCCCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHH------HcCCcEEEEcccchhHHHHHHHcC
Confidence            457899999999999999 9999999999999999999999999999987      46899999998731          


Q ss_pred             -----------CchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhh-cCcCC------hHHHHHHHHHHHHHHHHHHHHc
Q 036464          120 -----------FYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFR-HGFVD------LALRTRVLSGIALKLMNLAKKF  181 (226)
Q Consensus       120 -----------~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~-~~~~~------~~~r~~~l~~~~~~L~~la~~~  181 (226)
                                 ...+  ..+..+..++++ ..+++|||||++++++ .+++.      ...+.+.+.+.++.|..+++++
T Consensus       105 vd~~~l~v~~p~~~e--q~l~~~~~li~~-~~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~l~~~  181 (321)
T TIGR02012       105 VDIDNLLVSQPDTGE--QALEIAETLVRS-GAVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGALSKS  181 (321)
T ss_pred             CCHHHeEEecCCCHH--HHHHHHHHHhhc-cCCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHHHHhC
Confidence                       1111  124445555554 4899999999999884 23321      1234456678899999999999


Q ss_pred             CCEEEEeccccccCCCCCCcCCcCCCCch
Q 036464          182 SLALLEPNLATTANLAESCLTCLRDSGSR  210 (226)
Q Consensus       182 ~~~vi~~nq~~~~~~~~~~~~~~~~sg~~  210 (226)
                      |+++|+|||++..++.....+.....|.+
T Consensus       182 ~~tvi~tNQvr~~~g~~~~~~e~~~GG~a  210 (321)
T TIGR02012       182 NTTAIFINQIREKIGVMFGNPETTTGGRA  210 (321)
T ss_pred             CCEEEEEecceeccCcccCCCccCcCccH
Confidence            99999999999987654444444444443

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=3.5e-25  Score=190.90  Aligned_cols=135  Identities=29%  Similarity=0.401  Sum_probs=120.7

Q ss_pred             cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHH---
Q 036464           51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV---  127 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~---  127 (226)
                      ++..+++||+.+||++||||+.+|++++|.|+||.|||||++|++..++      ..+ +|+|+++|  ++.+|+.+   
T Consensus        70 ~~~~Ri~tg~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA------~~~-~vLYVsGE--ES~~QiklRA~  140 (456)
T COG1066          70 EEEPRISTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA------KRG-KVLYVSGE--ESLQQIKLRAD  140 (456)
T ss_pred             eecccccCChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHH------hcC-cEEEEeCC--cCHHHHHHHHH
Confidence            5679999999999999999999999999999999999999999999998      344 99999999  77776532   


Q ss_pred             ----------------HHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464          128 ----------------INYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA  191 (226)
Q Consensus       128 ----------------l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~  191 (226)
                                      ++++.+.+++. +|+++|||||+.++.++.+..+..-.++++....|.++|++.|++++++-|+
T Consensus       141 RL~~~~~~l~l~aEt~~e~I~~~l~~~-~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVGHV  219 (456)
T COG1066         141 RLGLPTNNLYLLAETNLEDIIAELEQE-KPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVGHV  219 (456)
T ss_pred             HhCCCccceEEehhcCHHHHHHHHHhc-CCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEEEE
Confidence                            45677777765 8999999999999998888777788899999999999999999999999999


Q ss_pred             cccC
Q 036464          192 TTAN  195 (226)
Q Consensus       192 ~~~~  195 (226)
                      ||.-
T Consensus       220 TKeG  223 (456)
T COG1066         220 TKEG  223 (456)
T ss_pred             cccc
Confidence            9854

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=99.91  E-value=8.6e-24  Score=171.85  Aligned_cols=127  Identities=33%  Similarity=0.462  Sum_probs=100.6

Q ss_pred             HHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCch--------------------
Q 036464           63 LDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYT--------------------  122 (226)
Q Consensus        63 LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~--------------------  122 (226)
                      ||.+|+||+++|++++|+|+||+|||+||++++.+.+      ..+++|+||++|. ...                    
T Consensus         1 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~------~~g~~v~yi~~e~-~~~~rl~~~~~~~~~~~~~~i~~   73 (209)
T TIGR02237         1 IDELLGGGVERGTITQIYGPPGSGKTNICMILAVNAA------RQGKKVVYIDTEG-LSPERFKQIAEDRPERALSNFIV   73 (209)
T ss_pred             ChhhhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHH------hCCCeEEEEECCC-CCHHHHHHHHHhChHHHhcCEEE
Confidence            6999999999999999999999999999999999987      4678999999983 111                    


Q ss_pred             -------HHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCC-hHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          123 -------EQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVD-LALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       123 -------~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~-~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                             ++...++.+.+.+.+. ++++|||||++++++.+..+ ...+.+.+.+++..|+++++++|+++++|||++..
T Consensus        74 ~~~~~~~~~~~~~~~l~~~~~~~-~~~lvVIDSis~l~~~~~~~~~~~~~~~l~~~~~~L~~~~~~~~v~vl~t~~~~~~  152 (209)
T TIGR02237        74 FEVFDFDEQGVAIQKTSKFIDRD-SASLVVVDSFTALYRLELSDDRISRNRELARQLTLLLSLARKKNLAVVITNQVYTD  152 (209)
T ss_pred             EECCCHHHHHHHHHHHHHHHhhc-CccEEEEeCcHHHhHHHhCCccHHHHHHHHHHHHHHHHHHHHcCCEEEEEcccEEe
Confidence                   1112244445555554 79999999999988755432 23455677788889999999999999999999876


Q ss_pred             CCC
Q 036464          195 NLA  197 (226)
Q Consensus       195 ~~~  197 (226)
                      .++
T Consensus       153 ~~~  155 (209)
T TIGR02237       153 VNN  155 (209)
T ss_pred             cCC
Confidence            654

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=99.91  E-value=1.1e-23  Score=184.50  Aligned_cols=135  Identities=30%  Similarity=0.396  Sum_probs=110.6

Q ss_pred             cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHH----
Q 036464           51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSA----  126 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~----  126 (226)
                      .+..+++||+++||++|+||+++|++++|.|+||+|||+|++|++.+.+      ..+++|+|++.|  +..+++.    
T Consensus        59 ~~~~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a------~~g~~VlYvs~E--Es~~qi~~Ra~  130 (372)
T cd01121          59 EEEERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLA------KRGGKVLYVSGE--ESPEQIKLRAD  130 (372)
T ss_pred             cccCccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHH------hcCCeEEEEECC--cCHHHHHHHHH
Confidence            3567999999999999999999999999999999999999999999887      456899999987  3344331    


Q ss_pred             ---------------HHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464          127 ---------------VINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA  191 (226)
Q Consensus       127 ---------------~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~  191 (226)
                                     .++.+.+.+.+. ++++|||||+++++..+.+..+++..++++++..|+++++++++++++++|+
T Consensus       131 rlg~~~~~l~l~~e~~le~I~~~i~~~-~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghv  209 (372)
T cd01121         131 RLGISTENLYLLAETNLEDILASIEEL-KPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHV  209 (372)
T ss_pred             HcCCCcccEEEEccCcHHHHHHHHHhc-CCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeec
Confidence                           134555555554 8999999999998766544333345568888999999999999999999999


Q ss_pred             ccc
Q 036464          192 TTA  194 (226)
Q Consensus       192 ~~~  194 (226)
                      ++.
T Consensus       210 tk~  212 (372)
T cd01121         210 TKE  212 (372)
T ss_pred             cCC
Confidence            985

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>TIGR00416 sms DNA repair protein RadA

Probab=99.90  E-value=2.4e-23  Score=186.92  Aligned_cols=135  Identities=26%  Similarity=0.341  Sum_probs=109.6

Q ss_pred             cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHH----
Q 036464           51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSA----  126 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~----  126 (226)
                      ++..+++||+++||++|+||+++|++++|.|+||+|||+|++|++.+.+      ..+++|+|++.|  +..+|+.    
T Consensus        71 ~~~~ri~TGi~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a------~~g~kvlYvs~E--Es~~qi~~ra~  142 (454)
T TIGR00416        71 EEVPRFSSGFGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLA------KNQMKVLYVSGE--ESLQQIKMRAI  142 (454)
T ss_pred             cccCccccCcHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHH------hcCCcEEEEECc--CCHHHHHHHHH
Confidence            4568999999999999999999999999999999999999999999887      356799999988  3333321    


Q ss_pred             ---------------HHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464          127 ---------------VINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA  191 (226)
Q Consensus       127 ---------------~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~  191 (226)
                                     .++.+.+.+++. ++++|||||+++++..+....+++..++++++..|.++|+++|+++++++|+
T Consensus       143 rlg~~~~~l~~~~e~~~~~I~~~i~~~-~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hv  221 (454)
T TIGR00416       143 RLGLPEPNLYVLSETNWEQICANIEEE-NPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHV  221 (454)
T ss_pred             HcCCChHHeEEcCCCCHHHHHHHHHhc-CCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence                           134555566554 7999999999998766543333344557788889999999999999999999


Q ss_pred             ccc
Q 036464          192 TTA  194 (226)
Q Consensus       192 ~~~  194 (226)
                      ++.
T Consensus       222 tke  224 (454)
T TIGR00416       222 TKE  224 (454)
T ss_pred             ccC
Confidence            874

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PRK11823 DNA repair protein RadA; Provisional

Probab=99.90  E-value=2.8e-23  Score=186.28  Aligned_cols=135  Identities=30%  Similarity=0.415  Sum_probs=110.8

Q ss_pred             cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHH----
Q 036464           51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSA----  126 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~----  126 (226)
                      .+..+++||+++||++|+||+++|++++|+|+||+|||+|++|++.+.+      ..+++|+|+++|  +..+++.    
T Consensus        57 ~~~~ri~TGi~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a------~~g~~vlYvs~E--es~~qi~~ra~  128 (446)
T PRK11823         57 EEEPRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLA------AAGGKVLYVSGE--ESASQIKLRAE  128 (446)
T ss_pred             ccCCcccCCcHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHH------hcCCeEEEEEcc--ccHHHHHHHHH
Confidence            4568899999999999999999999999999999999999999999886      357899999988  4444431    


Q ss_pred             ---------------HHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464          127 ---------------VINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA  191 (226)
Q Consensus       127 ---------------~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~  191 (226)
                                     .++.+.+.+++. ++++|||||++++++.+.+...++..++++++..|.++++++|+++++++|+
T Consensus       129 rlg~~~~~l~~~~e~~l~~i~~~i~~~-~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~~~itvilv~hv  207 (446)
T PRK11823        129 RLGLPSDNLYLLAETNLEAILATIEEE-KPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQRGIAVFLVGHV  207 (446)
T ss_pred             HcCCChhcEEEeCCCCHHHHHHHHHhh-CCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeec
Confidence                           133444555543 7899999999998876554334455667888999999999999999999999


Q ss_pred             ccc
Q 036464          192 TTA  194 (226)
Q Consensus       192 ~~~  194 (226)
                      ++.
T Consensus       208 tk~  210 (446)
T PRK11823        208 TKE  210 (446)
T ss_pred             cCC
Confidence            874

>KOG1433 consensus DNA repair protein RAD51/RHP55 [Replication, recombination and repair]

Probab=99.90  E-value=1e-22  Score=173.54  Aligned_cols=184  Identities=28%  Similarity=0.375  Sum_probs=147.7

Q ss_pred             CCHHHHHHHHhCCCccHHHHHhCChhHHhh----------chHhHHHHHH---HhhcccCceecCchhHHHhhCCCCCCC
Q 036464            8 ISATQRGKLISAGYTSLSSICSASSSDISR----------GTQTAWDMLQ---EEQESLARITTSCADLDNILGGGIGCR   74 (226)
Q Consensus         8 l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----------~~~~a~~l~~---~~~~~~~~i~Tg~~~LD~~l~GGi~~G   74 (226)
                      +++..+.+|+.++|+++.++...+.+++..          +...++..+.   +.+.....++||++.||++|+||++.|
T Consensus        32 ita~~v~~l~~~~l~~v~~l~~~~~~el~~i~~~s~~~~~k~~~~l~~~~~~~~~~~~~~~l~Tg~~~lD~lL~gGi~~g  111 (326)
T KOG1433|consen   32 ITAEDVLLLSEGELSTVEGLAYAGKEELLLIIGLSEAKSGKTVLGLHKLVPMLQLRSELGFLSTGSKALDKLLGGGIETG  111 (326)
T ss_pred             ccHhhhhhhcccceEEEeccccCcchhheeeeeecccccccHHHHHHHhhHHHHhhccceeeccchhhhhHhhccCcccC
Confidence            889999999999999999999999998887          2222333333   334678899999999999999999999


Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc------------------------------CchHH
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG------------------------------FYTEQ  124 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~------------------------------~~~~~  124 (226)
                      .++||+||||+|||+||+.++..+-      +.+.+++|||++..                              +..++
T Consensus       112 ~~TEi~G~p~~GKtQlc~~~~v~~~------gge~~~l~IDs~s~~~~~~~~~ia~~~~~~~~~~~~~l~~~~~~~~~~~  185 (326)
T KOG1433|consen  112 SLTELVGPPGSGKTQLCHTLAVTCG------GGEGKVLYIDTESTFRLERLTEIAGRSGLRGRDTLSNLMLARAYNLDHQ  185 (326)
T ss_pred             ceeEEecCCCccHHHHHHHHHHhcc------CCcceEEEEecchhcccchhhhhhhhhhhhhHHHHHHHHHHHHHhhHHH
Confidence            9999999999999999999988862      67889999997631                              11111


Q ss_pred             HHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCC
Q 036464          125 SAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAE  198 (226)
Q Consensus       125 ~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~  198 (226)
                      .........++.+. +..++++||.++.++..+.   +...+...+...++.|++++++++++||++||++.++++.
T Consensus       186 l~~~~~a~~~~~~~-~~~l~~vds~ta~~~~~~~g~~~~~a~~~~~~~~~~~l~~la~~~g~~vvitn~v~~~~d~~  261 (326)
T KOG1433|consen  186 LQLIQEAEIMINQS-RVKLLIVDSATALYRTTFKGRGELSARQMLLAKFLRSLKKLADEFGVAVVITNQVTAQVDGA  261 (326)
T ss_pred             HHHHHHHHHHhhcc-ceeEEEecccccccccccccccchHHHHHHHHHHHHHHHHHHHhcCceEEEecccccccccc
Confidence            12223333334443 7899999999999987765   4567888889999999999999999999999999999875

>PRK09519 recA DNA recombination protein RecA; Reviewed

Probab=99.90  E-value=1.3e-22  Score=189.71  Aligned_cols=139  Identities=25%  Similarity=0.320  Sum_probs=112.6

Q ss_pred             cccCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC---------
Q 036464           51 ESLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF---------  120 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~---------  120 (226)
                      ....+++||++.||.+|+ ||+++|++++|+|+||+|||+||++++.+.+      ..+++|+||++|...         
T Consensus        36 ~~v~~isTGi~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~------~~G~~v~yId~E~t~~~~~A~~lG  109 (790)
T PRK09519         36 QPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ------AAGGVAAFIDAEHALDPDYAKKLG  109 (790)
T ss_pred             cCCceecCCcHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH------HcCCcEEEECCccchhHHHHHHcC
Confidence            467899999999999998 9999999999999999999999999999887      578999999987411         


Q ss_pred             ------------chHHHHHHHHHHHHHhhCCCceEEEEcCCchhh-hcCcCC------hHHHHHHHHHHHHHHHHHHHHc
Q 036464          121 ------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHF-RHGFVD------LALRTRVLSGIALKLMNLAKKF  181 (226)
Q Consensus       121 ------------~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~-~~~~~~------~~~r~~~l~~~~~~L~~la~~~  181 (226)
                                  ..++  .+..+..++++ .++++|||||+++++ +.+++.      ...+++.+.+++..|.++++++
T Consensus       110 vDl~~llv~~~~~~E~--~l~~i~~lv~~-~~~~LVVIDSI~aL~~r~E~~g~~g~~~~~~q~rl~~q~L~~L~~~l~~~  186 (790)
T PRK09519        110 VDTDSLLVSQPDTGEQ--ALEIADMLIRS-GALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNS  186 (790)
T ss_pred             CChhHeEEecCCCHHH--HHHHHHHHhhc-CCCeEEEEcchhhhcchhhccCCCCcccHHHHHHHHHHHHHHHHHHHHhC
Confidence                        1111  34445555655 489999999999999 455431      2334555678899999999999


Q ss_pred             CCEEEEeccccccCCCC
Q 036464          182 SLALLEPNLATTANLAE  198 (226)
Q Consensus       182 ~~~vi~~nq~~~~~~~~  198 (226)
                      |++||+|||++..++..
T Consensus       187 nvtvi~TNQv~~~~g~~  203 (790)
T PRK09519        187 GTTAIFINQLRDKIGVM  203 (790)
T ss_pred             CCEEEEEecceecCCCc
Confidence            99999999999988743

>PHA02542 41 41 helicase; Provisional

Probab=99.88  E-value=6.2e-22  Score=178.23  Aligned_cols=158  Identities=16%  Similarity=0.148  Sum_probs=119.3

Q ss_pred             ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc------------
Q 036464           52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG------------  119 (226)
Q Consensus        52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~------------  119 (226)
                      ....++||++.||++++||+.+|+++.|.|+||+|||+|++++|.+++      ..+.+|+||+.|+.            
T Consensus       168 ~~~gi~TG~~~LD~~t~gGl~~G~LiiIaarPgmGKTtfalniA~~~a------~~g~~Vl~fSLEM~~~ql~~Rl~a~~  241 (473)
T PHA02542        168 KANKIPFKLEILNKITKGGAERKTLNVLLAGVNVGKSLGLCSLAADYL------QQGYNVLYISMEMAEEVIAKRIDANL  241 (473)
T ss_pred             CCCccCCCcHHHHHhccCCCCCCcEEEEEcCCCccHHHHHHHHHHHHH------hcCCcEEEEeccCCHHHHHHHHHHHH
Confidence            367899999999999989999999999999999999999999999987      46789999998850            


Q ss_pred             ---Cc-------hHHH-HH-----------------------HHHHHHHH----hhCC-CceEEEEcCCchhhhcCcC-C
Q 036464          120 ---FY-------TEQS-AV-----------------------INYLDKFV----SEHK-DVKVVIIDSIAFHFRHGFV-D  159 (226)
Q Consensus       120 ---~~-------~~~~-~~-----------------------l~~l~~~l----~~~~-~~~lvVIDsl~~l~~~~~~-~  159 (226)
                         ..       .+.. ..                       ...+...+    .+.. ++++||||+++-+-..... .
T Consensus       242 ~~i~~~~l~~l~~~~~~~~~~~~~~~~~~~l~I~~~d~~~lt~~~ir~~~rrlk~~~g~~~dlVvIDYLqL~~~~~~~~~  321 (473)
T PHA02542        242 LDVSLDDIDDLSKAEYKAKMEKLRSKTQGKLIIKQYPTGGAHAGHFRALLNELKLKKNFKPDVIIVDYLGICASSRLRVS  321 (473)
T ss_pred             cCCCHHHHhhcCHHHHHHHHHHHHHHhCCCceeecCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEechhhccCCcccCC
Confidence               00       0000 00                       11122222    1221 3899999999955322111 1


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCC--CCcCCcCCCCchhHHHHHh
Q 036464          160 LALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAE--SCLTCLRDSGSRKAVAAAA  217 (226)
Q Consensus       160 ~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~--~~~~~~~~sg~~~~~~~~~  217 (226)
                      ..+|.+.+..+.+.||.+|++++|+||+.+|+++..+.+  +.+.++|+||+++.  +||
T Consensus       322 ~~nr~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~dP~lsDLreSG~IEq--dAD  379 (473)
T PHA02542        322 SENSYTYVKAIAEELRGLAVEHDVVVWTAAQTTRSGWDSSDVDMSDTAESAGLPA--TAD  379 (473)
T ss_pred             CCChHHHHHHHHHHHHHHHHHhCCeEEEEEeeCccccccCCCcchhcccccchHh--hcC
Confidence            235788899999999999999999999999999987654  77889999999654  554

>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily

Probab=99.87  E-value=1.6e-21  Score=174.35  Aligned_cols=153  Identities=21%  Similarity=0.310  Sum_probs=116.3

Q ss_pred             cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------
Q 036464           53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-------------  119 (226)
Q Consensus        53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-------------  119 (226)
                      ...++||++.||++++ |+.+|++++|+|+||+|||+|+++++.+++.     ..+.+|+|++.|+.             
T Consensus       174 ~~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~-----~~g~~v~~fSlEm~~~~l~~Rl~~~~~  247 (421)
T TIGR03600       174 LTGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVAL-----REGKPVLFFSLEMSAEQLGERLLASKS  247 (421)
T ss_pred             CcceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHH-----hCCCcEEEEECCCCHHHHHHHHHHHHc
Confidence            5679999999999996 9999999999999999999999999988863     35789999998850             


Q ss_pred             ----------C-chHHHH----------------------HHHHHHH----HHhhCCCceEEEEcCCchhhhcCcCChHH
Q 036464          120 ----------F-YTEQSA----------------------VINYLDK----FVSEHKDVKVVIIDSIAFHFRHGFVDLAL  162 (226)
Q Consensus       120 ----------~-~~~~~~----------------------~l~~l~~----~l~~~~~~~lvVIDsl~~l~~~~~~~~~~  162 (226)
                                . ..+...                      .++.+..    +..+.+++++||||+++.+....   ...
T Consensus       248 ~v~~~~~~~~~l~~~~~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~~~~---~~~  324 (421)
T TIGR03600       248 GINTGNIRTGRFNDSDFNRLLNAVDRLSEKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTR---GRD  324 (421)
T ss_pred             CCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccCCCC---CCC
Confidence                      0 000000                      0222222    22233369999999999654321   124


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhHHH
Q 036464          163 RTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKAVA  214 (226)
Q Consensus       163 r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~~~  214 (226)
                      |...+.++.+.||.+|++++++||+++|+++..+.    .+.+.++|+||++...+
T Consensus       325 ~~~~~~~i~~~Lk~lAke~~i~Vi~lsQlnr~~~~r~~krp~lsdlr~Sg~Ieq~A  380 (421)
T TIGR03600       325 RNEELGGISRGLKALAKELDVPVVLLAQLNRGSEKRTDKRPIMSDLRDSGAIEQDA  380 (421)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcEEEecccCcchhhcCCCCCChHHHhhcCCccccC
Confidence            67789999999999999999999999999986643    46677899999965543

Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.

>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []

Probab=99.87  E-value=1.6e-21  Score=166.59  Aligned_cols=150  Identities=23%  Similarity=0.265  Sum_probs=112.9

Q ss_pred             cccCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc----------
Q 036464           51 ESLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG----------  119 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~----------  119 (226)
                      .....+|||++.||.+|+ ||+|+|.++||+|++++|||+|+++++.+++      ..+..|+|||.|..          
T Consensus        29 ~~~~~i~TG~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q------~~g~~~a~ID~e~~ld~~~a~~lG  102 (322)
T PF00154_consen   29 QNIEVISTGSPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQ------KQGGICAFIDAEHALDPEYAESLG  102 (322)
T ss_dssp             CSS-EE--S-HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH------HTT-EEEEEESSS---HHHHHHTT
T ss_pred             cccceEecCCcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhh------cccceeEEecCcccchhhHHHhcC
Confidence            456889999999999999 9999999999999999999999999999887      46899999998741          


Q ss_pred             -----------CchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhc-----CcC--ChHHHHHHHHHHHHHHHHHHHHc
Q 036464          120 -----------FYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRH-----GFV--DLALRTRVLSGIALKLMNLAKKF  181 (226)
Q Consensus       120 -----------~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~-----~~~--~~~~r~~~l~~~~~~L~~la~~~  181 (226)
                                 +..+  ..+..++++++. ..+++|||||+.++...     +..  ....+.+.|.+.++.+.....+.
T Consensus       103 vdl~rllv~~P~~~E--~al~~~e~lirs-g~~~lVVvDSv~al~p~~E~e~~~~~~~~g~~Ar~ms~~lr~lt~~l~~~  179 (322)
T PF00154_consen  103 VDLDRLLVVQPDTGE--QALWIAEQLIRS-GAVDLVVVDSVAALVPKAELEGEIGDQQVGLQARLMSQALRKLTPLLSKS  179 (322)
T ss_dssp             --GGGEEEEE-SSHH--HHHHHHHHHHHT-TSESEEEEE-CTT-B-HHHHTTSTSSTSSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccceEEecCCcHH--HHHHHHHHHhhc-ccccEEEEecCcccCCHHHHhhccccccCcchHHHHHHHHHHHHHHHHhh
Confidence                       1122  235566666665 47899999999987543     111  23467888999999999999999


Q ss_pred             CCEEEEeccccccCCCCCCcCCcCCCCc
Q 036464          182 SLALLEPNLATTANLAESCLTCLRDSGS  209 (226)
Q Consensus       182 ~~~vi~~nq~~~~~~~~~~~~~~~~sg~  209 (226)
                      |+++|++||++.+++...+.|.....|.
T Consensus       180 ~~~~i~INQ~R~~ig~~~g~~~~t~GG~  207 (322)
T PF00154_consen  180 NTTLIFINQVRDKIGVMFGNPETTPGGR  207 (322)
T ss_dssp             T-EEEEEEEESSSSSSSSSSSSCCTSHH
T ss_pred             ceEEEEeehHHHHHhhccCCCcCCCCCc
Confidence            9999999999999987655555545554

In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....

>PRK05748 replicative DNA helicase; Provisional

Probab=99.87  E-value=1.9e-21  Score=175.14  Aligned_cols=156  Identities=19%  Similarity=0.274  Sum_probs=117.5

Q ss_pred             ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc------------
Q 036464           52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG------------  119 (226)
Q Consensus        52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~------------  119 (226)
                      ...+++||++.||.+++ |+++|+++.|.|+||+|||+|+++++.+++.     ..+.+|+|++.|+.            
T Consensus       182 ~~~gi~TG~~~LD~~~~-G~~~G~livIaarpg~GKT~~al~ia~~~a~-----~~g~~v~~fSlEms~~~l~~R~l~~~  255 (448)
T PRK05748        182 DITGIPTGFTDLDKMTS-GLQPNDLIIVAARPSVGKTAFALNIAQNVAT-----KTDKNVAIFSLEMGAESLVMRMLCAE  255 (448)
T ss_pred             CCCCccCChHHHHHhcC-CCCCCceEEEEeCCCCCchHHHHHHHHHHHH-----hCCCeEEEEeCCCCHHHHHHHHHHHh
Confidence            35689999999999985 9999999999999999999999999999863     35789999998750            


Q ss_pred             -----------C-chHHH--------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChH
Q 036464          120 -----------F-YTEQS--------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA  161 (226)
Q Consensus       120 -----------~-~~~~~--------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~  161 (226)
                                 . ..+..                          .....+.++..+.+++++||||+++.+- .......
T Consensus       256 ~~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~-~~~~~~~  334 (448)
T PRK05748        256 GNIDAQRLRTGQLTDDDWPKLTIAMGSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ-GSGRSGE  334 (448)
T ss_pred             cCCCHHHhhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC-CCCCCCc
Confidence                       0 00010                          0112233333333368999999999653 2111113


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC----CCCCcCCcCCCCchhHHH
Q 036464          162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL----AESCLTCLRDSGSRKAVA  214 (226)
Q Consensus       162 ~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~----~~~~~~~~~~sg~~~~~~  214 (226)
                      .|...+.++.+.||.+|++++++||++.|+++..+    ..+.+.++|+||+++..+
T Consensus       335 ~r~~~i~~i~~~LK~lAke~~i~vi~lsQlnr~~~~r~~k~p~lsdlr~Sg~Ieq~A  391 (448)
T PRK05748        335 NRQQEVSEISRSLKALAKELKVPVIALSQLSRGVEQRQDKRPVMSDIRESGSIEQDA  391 (448)
T ss_pred             CHHHHHHHHHHHHHHHHHHhCCeEEEecccChhHhhcCCCCCChHHHHhhcchhcCC
Confidence            47788999999999999999999999999998543    457788999999975544

>PRK09165 replicative DNA helicase; Provisional

Probab=99.87  E-value=1.1e-21  Score=178.05  Aligned_cols=160  Identities=21%  Similarity=0.268  Sum_probs=117.1

Q ss_pred             ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhcccccc---------CCCCCeEEEEecccc---
Q 036464           52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEF---------GGLGGKAIYIGKCLG---  119 (226)
Q Consensus        52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~---------~~~~~~vlyi~~e~~---  119 (226)
                      ...+++||++.||.++ ||+.+|++++|.|+||+|||+|+++++.+++....+         ...+.+|+||+.|+.   
T Consensus       196 ~~~gi~TG~~~LD~~~-gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~q  274 (497)
T PRK09165        196 HLSGISTGLRDLDSKL-GGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQ  274 (497)
T ss_pred             CCCcccCChHHHhhhc-CCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHH
Confidence            3568999999999999 689999999999999999999999999998732100         013678999998850   


Q ss_pred             --------------------C-chHHH--------------------------HHHHHHHHHHhhCCCceEEEEcCCchh
Q 036464          120 --------------------F-YTEQS--------------------------AVINYLDKFVSEHKDVKVVIIDSIAFH  152 (226)
Q Consensus       120 --------------------~-~~~~~--------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l  152 (226)
                                          . ..+..                          .+...+.++..+ .++++||||+++.+
T Consensus       275 l~~R~la~~s~v~~~~i~~~~l~~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l~~~-~~~~lvvIDyLqli  353 (497)
T PRK09165        275 LATRILSEQSEISSSKIRRGKISEEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRLKRQ-HGLDLLVVDYLQLI  353 (497)
T ss_pred             HHHHHHHHhcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhc
Confidence                                0 00000                          011122232223 47999999999954


Q ss_pred             hhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhHH
Q 036464          153 FRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKAV  213 (226)
Q Consensus       153 ~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~~  213 (226)
                      -.........|.+++..+.+.||.+|++++|+||+++|+++..+.    .+.+.++|+||++...
T Consensus       354 ~~~~~~~~~~r~~ev~~is~~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqd  418 (497)
T PRK09165        354 RGSSKRSSDNRVQEISEITQGLKALAKELNIPVIALSQLSRQVEQRDDKRPQLSDLRESGSIEQD  418 (497)
T ss_pred             cCCCCCCCCchHHHHHHHHHHHHHHHHHhCCeEEEeecccchhhccCCCCCchhhhhhccchhcc
Confidence            322111123477789999999999999999999999999987653    5778899999996543

>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork

Probab=99.87  E-value=1.1e-21  Score=164.75  Aligned_cols=152  Identities=26%  Similarity=0.386  Sum_probs=109.2

Q ss_pred             ceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc---------------
Q 036464           55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG---------------  119 (226)
Q Consensus        55 ~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~---------------  119 (226)
                      .|+||++.||+++ ||+.+|+++.|.|+||+|||+|+++++.+++.     ..+.+|+|++.|+.               
T Consensus         1 Gi~TG~~~LD~~l-gG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~-----~~~~~vly~SlEm~~~~l~~R~la~~s~v   74 (259)
T PF03796_consen    1 GIPTGFPALDRLL-GGLRPGELTVIAARPGVGKTAFALQIALNAAL-----NGGYPVLYFSLEMSEEELAARLLARLSGV   74 (259)
T ss_dssp             SB-SSTHHHHHHH-SSB-TT-EEEEEESTTSSHHHHHHHHHHHHHH-----TTSSEEEEEESSS-HHHHHHHHHHHHHTS
T ss_pred             CCCCChHHHHHHh-cCCCcCcEEEEEecccCCchHHHHHHHHHHHH-----hcCCeEEEEcCCCCHHHHHHHHHHHhhcc
Confidence            4899999999999 58999999999999999999999999999984     23589999998850               


Q ss_pred             ---------CchHHH--------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHH
Q 036464          120 ---------FYTEQS--------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRT  164 (226)
Q Consensus       120 ---------~~~~~~--------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~  164 (226)
                               ...+..                          .+...+..+..+..++++||||+++.+-...  ....+.
T Consensus        75 ~~~~i~~g~l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~--~~~~~~  152 (259)
T PF03796_consen   75 PYNKIRSGDLSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSED--SSDNRR  152 (259)
T ss_dssp             THHHHHCCGCHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSC--SSSCCH
T ss_pred             hhhhhhccccCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCC--CCCCHH
Confidence                     000110                          0112223333333589999999999654432  222356


Q ss_pred             HHHHHHHHHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhHHH
Q 036464          165 RVLSGIALKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKAVA  214 (226)
Q Consensus       165 ~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~~~  214 (226)
                      ..+..+++.|+++|++++++||++.|+++....    .+.+.+++.||.+...+
T Consensus       153 ~~~~~i~~~Lk~lA~~~~i~vi~~sQlnr~~~~~~~~~p~l~dl~~sg~Ie~~A  206 (259)
T PF03796_consen  153 QEIGEISRELKALAKELNIPVIALSQLNREAEDREDKRPSLSDLRESGAIEQDA  206 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHTSEEEEEEEBSGGGGGSSSCS--HHHHCSTSSHHHH-
T ss_pred             HHHHHHHHHHHHHHHHcCCeEEEccccChhhhcccccccchhhhhhhHHHHHHH
Confidence            778899999999999999999999999986543    35566788888865443

Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=99.87  E-value=2.3e-21  Score=162.73  Aligned_cols=126  Identities=24%  Similarity=0.281  Sum_probs=96.6

Q ss_pred             CceecCchhHHHhh--------------CCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc
Q 036464           54 ARITTSCADLDNIL--------------GGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG  119 (226)
Q Consensus        54 ~~i~Tg~~~LD~~l--------------~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~  119 (226)
                      ..++||++.||++|              +||+|+|++++|+|+||+|||+||+|++.+.+      ..+++|+||+.|..
T Consensus         2 ~~~~tGi~glD~~l~~~~~~~~~~~~~~~GGip~gs~~lI~G~pGtGKT~l~~qf~~~~a------~~Ge~vlyis~Ee~   75 (259)
T TIGR03878         2 FGVPTGVEGLDELFFKVEIEEGKIVRKPLGGIPAYSVINITGVSDTGKSLMVEQFAVTQA------SRGNPVLFVTVESP   75 (259)
T ss_pred             CCccCCchhHHHhhccccccccccccccCCCeECCcEEEEEcCCCCCHHHHHHHHHHHHH------hCCCcEEEEEecCC
Confidence            35899999999999              59999999999999999999999999999887      46889999998731


Q ss_pred             Cc--hHH----------------------------------HHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHH
Q 036464          120 FY--TEQ----------------------------------SAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALR  163 (226)
Q Consensus       120 ~~--~~~----------------------------------~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r  163 (226)
                      ..  .++                                  ..++..+...+++. ++++|||||+++++...  +    
T Consensus        76 ~~~~~~~l~~~a~~~g~d~~~~~~~l~~id~~~~~~~~~~~~~l~~~l~~~i~~~-~~~~vVIDSls~l~~~~--~----  148 (259)
T TIGR03878        76 ANFVYTSLKERAKAMGVDFDKIEENIILIDAASSTELRENVPNLLATLAYAIKEY-KVKNTVIDSITGLYEAK--E----  148 (259)
T ss_pred             chHHHHHHHHHHHHcCCCHHHHhCCEEEEECCCchhhhhhHHHHHHHHHHHHHhh-CCCEEEEcCchHhcccc--h----
Confidence            10  000                                  01122334444443 79999999999876431  1    


Q ss_pred             HHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          164 TRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       164 ~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                       ...++++..|.+++++.++++++|+|..+
T Consensus       149 -~~~r~~~~~L~~~lk~~~~t~ll~~e~~~  177 (259)
T TIGR03878       149 -MMAREIVRQLFNFMKKWYQTALFVSQKRS  177 (259)
T ss_pred             -HHHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence             23456777888999999999999999765

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>TIGR00665 DnaB replicative DNA helicase

Probab=99.87  E-value=2e-21  Score=174.29  Aligned_cols=154  Identities=21%  Similarity=0.320  Sum_probs=115.7

Q ss_pred             ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc------------
Q 036464           52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG------------  119 (226)
Q Consensus        52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~------------  119 (226)
                      ...+++||++.||+++ ||+++|++++|.|+||+|||+|+++++.+++.     ..+.+|+|++.|+.            
T Consensus       174 ~~~gi~tG~~~LD~~~-~G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~-----~~g~~vl~~SlEm~~~~i~~R~~~~~  247 (434)
T TIGR00665       174 GITGVPTGFTDLDKLT-SGLQPSDLIILAARPSMGKTAFALNIAENAAI-----KEGKPVAFFSLEMSAEQLAMRMLSSE  247 (434)
T ss_pred             CCCcccCCchhhHhhc-CCCCCCeEEEEEeCCCCChHHHHHHHHHHHHH-----hCCCeEEEEeCcCCHHHHHHHHHHHh
Confidence            3578999999999999 59999999999999999999999999999873     34679999998850            


Q ss_pred             ------------CchHHH--------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChH
Q 036464          120 ------------FYTEQS--------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA  161 (226)
Q Consensus       120 ------------~~~~~~--------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~  161 (226)
                                  ...++.                          .+...+.++..+. ++++||||+++.+-....  ..
T Consensus       248 ~~v~~~~~~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~~~~~i~~~i~~~~~~~-~~~~vvID~l~~i~~~~~--~~  324 (434)
T TIGR00665       248 SRVDSQKLRTGKLSDEDWEKLTSAAGKLSEAPLYIDDTPGLTITELRAKARRLKREH-GLGLIVIDYLQLMSGSGR--SE  324 (434)
T ss_pred             cCCCHHHhccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhc-CCCEEEEcchHhcCCCCC--CC
Confidence                        001100                          0112233333343 699999999996532211  12


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC----CCCCcCCcCCCCchhHHH
Q 036464          162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL----AESCLTCLRDSGSRKAVA  214 (226)
Q Consensus       162 ~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~----~~~~~~~~~~sg~~~~~~  214 (226)
                      .|...+..+.+.|+++|++++|+||+++|+++..+    ..+.+.++++||.+...+
T Consensus       325 ~r~~~i~~i~~~Lk~lA~e~~i~vi~lsqlnr~~~~r~~~~p~lsdlr~Sg~ieq~a  381 (434)
T TIGR00665       325 NRQQEVSEISRSLKALAKELNVPVIALSQLSRSVEQREDKRPQLSDLRESGSIEQDA  381 (434)
T ss_pred             CHHHHHHHHHHHHHHHHHHhCCeEEEEeccCcchhccCCCCCChHHHhhccchhhcC
Confidence            46677899999999999999999999999998654    345667888899865543

This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=99.87  E-value=3.1e-21  Score=160.05  Aligned_cols=123  Identities=24%  Similarity=0.353  Sum_probs=96.8

Q ss_pred             ceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHH----------
Q 036464           55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ----------  124 (226)
Q Consensus        55 ~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~----------  124 (226)
                      +++||++.||++|+||+++|++++|+|+||+|||+|++|++...+      ..+.+|+|++.|.  ..++          
T Consensus         2 ri~tGi~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~------~~ge~~lyvs~ee--~~~~i~~~~~~~g~   73 (237)
T TIGR03877         2 RVKTGIPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGL------QMGEPGIYVALEE--HPVQVRRNMAQFGW   73 (237)
T ss_pred             ccccCcHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHH------HcCCcEEEEEeeC--CHHHHHHHHHHhCC
Confidence            689999999999999999999999999999999999999999876      4689999999763  1100          


Q ss_pred             --------------------------------------HHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHH
Q 036464          125 --------------------------------------SAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRV  166 (226)
Q Consensus       125 --------------------------------------~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~  166 (226)
                                                            ......+.+.+++. ++++|||||++.++...  .     ..
T Consensus        74 ~~~~~~~~g~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~vVIDSls~l~~~~--~-----~~  145 (237)
T TIGR03877        74 DVRKYEEEGKFAIVDAFTGGIGEAAEREKYVVKDPTDVRELIDVLRQAIRDI-NAKRVVIDSVTTLYITK--P-----AM  145 (237)
T ss_pred             CHHHHhhcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHHh-CCCEEEEcChhHhhcCC--h-----HH
Confidence                                                  12234444555544 68999999999876431  1     11


Q ss_pred             HHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          167 LSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       167 l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      .++++..|+++++++|+|+++|+|.+.
T Consensus       146 ~r~~l~~l~~~lk~~~~t~llt~~~~~  172 (237)
T TIGR03877       146 ARSIVMQLKRVLSGLGCTSIFVSQVSV  172 (237)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEECccc
Confidence            235678888889999999999999875

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PRK08006 replicative DNA helicase; Provisional

Probab=99.87  E-value=2.3e-21  Score=174.71  Aligned_cols=153  Identities=18%  Similarity=0.243  Sum_probs=116.6

Q ss_pred             cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------
Q 036464           53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-------------  119 (226)
Q Consensus        53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-------------  119 (226)
                      ...++||++.||+++ ||+.+|+++.|.|.||.|||+|++++|.+++.     ..+.+|+||+.|+.             
T Consensus       204 ~~Gi~TG~~~LD~~~-~Gl~~G~LiiIaarPgmGKTafalnia~~~a~-----~~g~~V~~fSlEM~~~ql~~Rlla~~~  277 (471)
T PRK08006        204 VTGVNTGYDDLNKKT-AGLQPSDLIIVAARPSMGKTTFAMNLCENAAM-----LQDKPVLIFSLEMPGEQIMMRMLASLS  277 (471)
T ss_pred             CCcccCCCHHHHHhh-cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-----hcCCeEEEEeccCCHHHHHHHHHHHhc
Confidence            467999999999998 69999999999999999999999999999873     34779999998850             


Q ss_pred             -----------CchHHH---------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChH
Q 036464          120 -----------FYTEQS---------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA  161 (226)
Q Consensus       120 -----------~~~~~~---------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~  161 (226)
                                 ...++.                           .....+.++..+.+++++||||+++-+-....  ..
T Consensus       278 ~v~~~~i~~~~l~~~e~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~--~~  355 (471)
T PRK08006        278 RVDQTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSL--SD  355 (471)
T ss_pred             CCCHHHhhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCC--CC
Confidence                       001110                           01112223333344689999999995422211  12


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhHH
Q 036464          162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKAV  213 (226)
Q Consensus       162 ~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~~  213 (226)
                      +|..++.++.+.||.+|++++|+||+..|+++..+.    .+.+.++|+||+++..
T Consensus       356 ~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~dkrP~lsDLreSG~IEqd  411 (471)
T PRK08006        356 NRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQD  411 (471)
T ss_pred             CcHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchhhhhhcCccccc
Confidence            467789999999999999999999999999987653    4778899999996543

>PRK08760 replicative DNA helicase; Provisional

Probab=99.86  E-value=2.6e-21  Score=174.74  Aligned_cols=151  Identities=17%  Similarity=0.249  Sum_probs=114.9

Q ss_pred             cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------
Q 036464           53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-------------  119 (226)
Q Consensus        53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-------------  119 (226)
                      ...++||++.||.++ ||+.+|+++.|.|+||+|||+|++++|.+++.     ..+.+|+|++.|+.             
T Consensus       209 ~~Gi~TG~~~LD~~t-~G~~~G~LivIaarPg~GKTafal~iA~~~a~-----~~g~~V~~fSlEMs~~ql~~Rl~a~~s  282 (476)
T PRK08760        209 ITGLPTGYNDFDAMT-AGLQPTDLIILAARPAMGKTTFALNIAEYAAI-----KSKKGVAVFSMEMSASQLAMRLISSNG  282 (476)
T ss_pred             CCcccCCcHHHHHHh-cCCCCCceEEEEeCCCCChhHHHHHHHHHHHH-----hcCCceEEEeccCCHHHHHHHHHHhhC
Confidence            567999999999998 57999999999999999999999999999873     34678999998750             


Q ss_pred             ----------C-chHHH--------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHH
Q 036464          120 ----------F-YTEQS--------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLAL  162 (226)
Q Consensus       120 ----------~-~~~~~--------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~  162 (226)
                                . ..++.                          .+...+.++..+ .++++||||+++.+ .... ....
T Consensus       283 ~i~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~t~~~I~~~~r~l~~~-~~~~lVvIDyLql~-~~~~-~~~~  359 (476)
T PRK08760        283 RINAQRLRTGALEDEDWARVTGAIKMLKETKIFIDDTPGVSPEVLRSKCRRLKRE-HDLGLIVIDYLQLM-SVPG-NSEN  359 (476)
T ss_pred             CCcHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHh-cCCCEEEEecHHhc-CCCC-CCcc
Confidence                      0 00100                          011122233233 47899999999954 3211 1134


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC----CCCCcCCcCCCCchhH
Q 036464          163 RTRVLSGIALKLMNLAKKFSLALLEPNLATTANL----AESCLTCLRDSGSRKA  212 (226)
Q Consensus       163 r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~----~~~~~~~~~~sg~~~~  212 (226)
                      |...+.++.+.||.+|++++|+||+++|+++..+    ..+.+.++|+||+++.
T Consensus       360 r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~Ieq  413 (476)
T PRK08760        360 RATEISEISRSLKGLAKELNVPVIALSQLNRSLETRTDKRPVMADLRESGAIEQ  413 (476)
T ss_pred             cHHHHHHHHHHHHHHHHHhCCEEEEeeccCccccccCCCCCCHHHHhhccchhc
Confidence            7788999999999999999999999999998764    3577889999999644

>PRK08506 replicative DNA helicase; Provisional

Probab=99.86  E-value=7.4e-21  Score=171.86  Aligned_cols=153  Identities=19%  Similarity=0.283  Sum_probs=116.7

Q ss_pred             cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------
Q 036464           53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-------------  119 (226)
Q Consensus        53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-------------  119 (226)
                      ...++||++.||.++ ||+++|++++|.|+||+|||+|+++++.+++      ..+.+|+||+.|+.             
T Consensus       172 ~~Gi~TG~~~LD~~~-~G~~~G~LivIaarpg~GKT~fal~ia~~~~------~~g~~V~~fSlEMs~~ql~~Rlla~~s  244 (472)
T PRK08506        172 IIGLDTGFVELNKMT-KGFNKGDLIIIAARPSMGKTTLCLNMALKAL------NQDKGVAFFSLEMPAEQLMLRMLSAKT  244 (472)
T ss_pred             CCcccCChHHHHhhc-CCCCCCceEEEEcCCCCChHHHHHHHHHHHH------hcCCcEEEEeCcCCHHHHHHHHHHHhc
Confidence            567999999999998 7999999999999999999999999999986      46789999998850             


Q ss_pred             ----------C-chHHHH----------------------HHHHH----HHHHhhCCCceEEEEcCCchhhhcCcCChHH
Q 036464          120 ----------F-YTEQSA----------------------VINYL----DKFVSEHKDVKVVIIDSIAFHFRHGFVDLAL  162 (226)
Q Consensus       120 ----------~-~~~~~~----------------------~l~~l----~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~  162 (226)
                                . ..+...                      .+..+    .++..+.+++++||||+++.+-...  ....
T Consensus       245 ~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~~~~--~~~~  322 (472)
T PRK08506        245 SIPLQNLRTGDLDDDEWERLSDACDELSKKKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMSGSG--NFKD  322 (472)
T ss_pred             CCCHHHHhcCCCCHHHHHHHHHHHHHHHcCCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhccCCC--CCCC
Confidence                      0 000000                      01222    3333333468999999999543221  1235


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC----CCCCcCCcCCCCchhHHH
Q 036464          163 RTRVLSGIALKLMNLAKKFSLALLEPNLATTANL----AESCLTCLRDSGSRKAVA  214 (226)
Q Consensus       163 r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~----~~~~~~~~~~sg~~~~~~  214 (226)
                      |...+..+.+.||.+|++++|+||++.|+++..+    ..+.+.++|+||++...+
T Consensus       323 r~~ev~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdA  378 (472)
T PRK08506        323 RHLQISEISRGLKLLARELDIPIIALSQLNRSLESRADKRPMLSDLRESGAIEQDA  378 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcEEEEeecCcchhhccCCCCChHHhhcchhhhhcC
Confidence            7788999999999999999999999999998764    357788999999965433

>PRK04328 hypothetical protein; Provisional

Probab=99.86  E-value=5.4e-21  Score=159.66  Aligned_cols=126  Identities=22%  Similarity=0.315  Sum_probs=97.8

Q ss_pred             CceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-------------cC
Q 036464           54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-------------GF  120 (226)
Q Consensus        54 ~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-------------~~  120 (226)
                      .+++||++.||++|+||+|+|++++|.|+||+|||+|++|++.+.+      ..+.+++||++|.             .+
T Consensus         3 ~rv~tGi~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~------~~ge~~lyis~ee~~~~i~~~~~~~g~d   76 (249)
T PRK04328          3 KRVKTGIPGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGL------QMGEPGVYVALEEHPVQVRRNMRQFGWD   76 (249)
T ss_pred             ceecCCchhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHH------hcCCcEEEEEeeCCHHHHHHHHHHcCCC
Confidence            5799999999999999999999999999999999999999999876      4789999999762             00


Q ss_pred             c---------------------------------hHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHH
Q 036464          121 Y---------------------------------TEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVL  167 (226)
Q Consensus       121 ~---------------------------------~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l  167 (226)
                      .                                 .+....++.+.+.+++. +++++||||++.++..+  .     ...
T Consensus        77 ~~~~~~~~~l~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~vVIDSlt~l~~~~--~-----~~~  148 (249)
T PRK04328         77 VRKYEEEGKFAIVDAFTGGIGSAAKREKYVVKDPDDVRELIDVLRQAIKDI-GAKRVVIDSVSTLYLTK--P-----AMA  148 (249)
T ss_pred             HHHHhhcCCEEEEeccccccccccccccccccCcccHHHHHHHHHHHHHhh-CCCEEEEeChhHhhcCC--h-----HHH
Confidence            0                                 00112334455555554 78999999999876432  1     112


Q ss_pred             HHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          168 SGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       168 ~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      ++++..|.++++++|+|+++|+|+..
T Consensus       149 r~~~~~l~~~lk~~g~t~llt~e~~~  174 (249)
T PRK04328        149 RSIVMQLKRVLSGLGCTAIFVSQVSV  174 (249)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEECccc
Confidence            35677888888999999999999874

>PRK05595 replicative DNA helicase; Provisional

Probab=99.86  E-value=3.8e-21  Score=172.88  Aligned_cols=153  Identities=18%  Similarity=0.241  Sum_probs=116.4

Q ss_pred             cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------
Q 036464           53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-------------  119 (226)
Q Consensus        53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-------------  119 (226)
                      ...++||++.||.++ ||+.+|+++.|.|+||+|||+|+++++.+++.     ..+.+|+|++.|+.             
T Consensus       181 ~~gi~tg~~~ld~~~-~G~~~g~liviaarpg~GKT~~al~ia~~~a~-----~~g~~vl~fSlEms~~~l~~R~~a~~~  254 (444)
T PRK05595        181 TTGVASGFRELDAKT-SGFQKGDMILIAARPSMGKTTFALNIAEYAAL-----REGKSVAIFSLEMSKEQLAYKLLCSEA  254 (444)
T ss_pred             CCcccCChHHHHHhc-CCCCCCcEEEEEecCCCChHHHHHHHHHHHHH-----HcCCcEEEEecCCCHHHHHHHHHHHhc
Confidence            468999999999998 69999999999999999999999999988653     35789999998850             


Q ss_pred             ----------C-chHHH--------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHH
Q 036464          120 ----------F-YTEQS--------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLAL  162 (226)
Q Consensus       120 ----------~-~~~~~--------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~  162 (226)
                                . ..+..                          .....+.++..+ .++++||||+++.+ .... ....
T Consensus       255 ~v~~~~~~~~~l~~~e~~~~~~~~~~l~~~~l~i~d~~~~t~~~i~~~~r~~~~~-~~~~~vvIDylql~-~~~~-~~~~  331 (444)
T PRK05595        255 NVDMLRLRTGNLEDKDWENIARASGPLAAAKIFIDDTAGVSVMEMRSKCRRLKIE-HGIDMILIDYLQLM-SGGK-GSES  331 (444)
T ss_pred             CCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEeHHHhc-cCCC-CCcc
Confidence                      0 00000                          011122233223 47999999999954 3221 2235


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhHHH
Q 036464          163 RTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKAVA  214 (226)
Q Consensus       163 r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~~~  214 (226)
                      |...+.++.+.||.+|++++|+||+++|+++..+.    .+.+.++|+||+++..+
T Consensus       332 r~~~v~~is~~LK~lAke~~i~vi~lsQLnR~~e~r~~~rP~lsdlr~Sg~Ieq~A  387 (444)
T PRK05595        332 RQQEVSEISRSIKALAKEMECPVIALSQLSRAPEQRADHRPMLSDLRESGSIEQDA  387 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeEEEeeccCcchhccCCCCCchhhhhhhcccccCC
Confidence            77889999999999999999999999999987653    47788999999965443

>PRK07004 replicative DNA helicase; Provisional

Probab=99.86  E-value=6.4e-21  Score=171.68  Aligned_cols=152  Identities=18%  Similarity=0.272  Sum_probs=116.3

Q ss_pred             cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------
Q 036464           53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-------------  119 (226)
Q Consensus        53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-------------  119 (226)
                      ...++||++.||+++ ||+++|+++.|+|.||+|||+|+++++.+++.     ..+.+|+|++.|+.             
T Consensus       193 ~~gi~TG~~~LD~~t-~G~~~g~liviaarpg~GKT~~al~ia~~~a~-----~~~~~v~~fSlEM~~~ql~~R~la~~~  266 (460)
T PRK07004        193 VTGTPTGFVDLDRMT-SGMHGGELIIVAGRPSMGKTAFSMNIGEYVAV-----EYGLPVAVFSMEMPGTQLAMRMLGSVG  266 (460)
T ss_pred             CCCccCCcHHhcccc-cCCCCCceEEEEeCCCCCccHHHHHHHHHHHH-----HcCCeEEEEeCCCCHHHHHHHHHHhhc
Confidence            468999999999999 59999999999999999999999999998874     35789999998850             


Q ss_pred             -----------CchHHH--------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHH
Q 036464          120 -----------FYTEQS--------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLAL  162 (226)
Q Consensus       120 -----------~~~~~~--------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~  162 (226)
                                 ...+..                          .+...+.++..+.+++++||||+++.+-...  ....
T Consensus       267 ~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~--~~~~  344 (460)
T PRK07004        267 RLDQHRMRTGRLTDEDWPKLTHAVQKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSS--QGEN  344 (460)
T ss_pred             CCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCC--CCCc
Confidence                       000100                          0112222333333468999999999553221  1235


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC----CCCCcCCcCCCCchhH
Q 036464          163 RTRVLSGIALKLMNLAKKFSLALLEPNLATTANL----AESCLTCLRDSGSRKA  212 (226)
Q Consensus       163 r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~----~~~~~~~~~~sg~~~~  212 (226)
                      |.+.+.++.+.||.+|++++|+||+.+|+++..+    ..+.+.++|+||+++.
T Consensus       345 r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~Ieq  398 (460)
T PRK07004        345 RATEISEISRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQ  398 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeEEEEeccChhhhccCCCCCChHHHhcchhhhh
Confidence            7888999999999999999999999999998664    4577889999999543

>PRK06321 replicative DNA helicase; Provisional

Probab=99.85  E-value=5.1e-21  Score=172.43  Aligned_cols=154  Identities=21%  Similarity=0.273  Sum_probs=116.4

Q ss_pred             cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------
Q 036464           53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-------------  119 (226)
Q Consensus        53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-------------  119 (226)
                      ...++||++.||++++ |+++|+++.|.|+||+|||+|+++++.+++.     ..+.+|+|++.|+.             
T Consensus       206 ~~Gi~tG~~~LD~~t~-Gl~~G~LiiiaarPgmGKTafal~ia~~~a~-----~~g~~v~~fSLEMs~~ql~~Rlla~~s  279 (472)
T PRK06321        206 ISGIPTHFIDLDKMIN-GFSPSNLMILAARPAMGKTALALNIAENFCF-----QNRLPVGIFSLEMTVDQLIHRIICSRS  279 (472)
T ss_pred             CCccccCcHHHHHHhc-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHH-----hcCCeEEEEeccCCHHHHHHHHHHhhc
Confidence            4689999999999995 9999999999999999999999999999863     34689999998750             


Q ss_pred             -----------CchHHHH----------------------HHHHH----HHHHhhCCCceEEEEcCCchhhhcC-cCChH
Q 036464          120 -----------FYTEQSA----------------------VINYL----DKFVSEHKDVKVVIIDSIAFHFRHG-FVDLA  161 (226)
Q Consensus       120 -----------~~~~~~~----------------------~l~~l----~~~l~~~~~~~lvVIDsl~~l~~~~-~~~~~  161 (226)
                                 ...+...                      .++.+    .++..+ .++++||||+++.+-... .....
T Consensus       280 ~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~~idd~~~~ti~~i~~~~r~~~~~-~~~~lvvIDyLql~~~~~~~~~~~  358 (472)
T PRK06321        280 EVESKKISVGDLSGRDFQRIVSVVNEMQEHTLLIDDQPGLKITDLRARARRMKES-YDIQFLIIDYLQLLSGSGNLRNSE  358 (472)
T ss_pred             CCCHHHhhcCCCCHHHHHHHHHHHHHHHcCCEEEeCCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHHcCCCCccCCcc
Confidence                       0011100                      01122    232223 468999999999543211 11224


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhHH
Q 036464          162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKAV  213 (226)
Q Consensus       162 ~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~~  213 (226)
                      .|..++.++.+.||.+|++++|+||++.|+++..+.    .+.+.++|+||+++..
T Consensus       359 ~r~~ei~~Isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLReSG~IEqd  414 (472)
T PRK06321        359 SRQTEISEISRMLKNLARELNIPILCLSQLSRKVEDRANHRPMMSDLRESGSIEQD  414 (472)
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCcEEEEeecChhhhccCCCCCCHHHHhhccccccc
Confidence            577889999999999999999999999999987653    5777889999996543

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=99.85  E-value=6.8e-21  Score=160.66  Aligned_cols=156  Identities=15%  Similarity=0.141  Sum_probs=111.8

Q ss_pred             cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------
Q 036464           53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-------------  119 (226)
Q Consensus        53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-------------  119 (226)
                      ...++||++.||.++ ||+++|++++|+|+||+|||+|+.+++.+++.     ..+.+|+||+.|..             
T Consensus        10 ~~~~~tg~~~Ld~~~-gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~-----~~g~~vl~iS~E~~~~~~~~r~~~~~~   83 (271)
T cd01122          10 NEEVWWPFPVLNKLT-KGLRKGELIILTAGTGVGKTTFLREYALDLIT-----QHGVRVGTISLEEPVVRTARRLLGQYA   83 (271)
T ss_pred             ccCCCCCcceeeeee-EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHH-----hcCceEEEEEcccCHHHHHHHHHHHHh
Confidence            358999999999999 79999999999999999999999999999873     23889999998740             


Q ss_pred             --Cch-----------------HHH------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHH
Q 036464          120 --FYT-----------------EQS------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLAL  162 (226)
Q Consensus       120 --~~~-----------------~~~------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~  162 (226)
                        ...                 +.+                  .+...+.++..+ .++++||||+++.+..... ....
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~l~~~~~-~~~~  161 (271)
T cd01122          84 GKRLHLPDTVFIYTLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAVS-HGIQHIIIDNLSIMVSDER-ASGD  161 (271)
T ss_pred             CCCcccCCccccccHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHhc-CCceEEEECCHHHHhccCC-Cchh
Confidence              000                 000                  111223333333 3799999999998764321 1223


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC-------CCCcCCcCCCCchhHHHHHhh
Q 036464          163 RTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA-------ESCLTCLRDSGSRKAVAAAAA  218 (226)
Q Consensus       163 r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~-------~~~~~~~~~sg~~~~~~~~~~  218 (226)
                      +...+.+++..|+++|++++++|++++|+++....       .+.+.+++.|+.  ....||.
T Consensus       162 ~~~~~~~~~~~L~~la~~~~vtvll~sq~~~~~~~~~~~~~~~~~~~d~~gs~~--i~~~aD~  222 (271)
T cd01122         162 ERKALDEIMTKLRGFATEHGIHITLVSHLRRPDGDKTHEEGGEVSLSDFRGSAA--IGQLADN  222 (271)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEEEEEecccCccCCCccccCCCceEEeccCcHh--HhhhccE
Confidence            45567889999999999999999999999985533       233444544554  4455553

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PRK08840 replicative DNA helicase; Provisional

Probab=99.85  E-value=1.1e-20  Score=169.93  Aligned_cols=153  Identities=18%  Similarity=0.255  Sum_probs=115.9

Q ss_pred             cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------
Q 036464           53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-------------  119 (226)
Q Consensus        53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-------------  119 (226)
                      ...++||++.||.++ ||+.+|+++.|.|.||+|||+|++++|.+++.     ..+.+|+||+.|+.             
T Consensus       197 ~~gi~TG~~~LD~~~-~G~~~g~LiviaarPg~GKTafalnia~~~a~-----~~~~~v~~fSlEMs~~ql~~Rlla~~s  270 (464)
T PRK08840        197 VTGVDTGFTDLNKKT-AGLQGSDLIIVAARPSMGKTTFAMNLCENAAM-----DQDKPVLIFSLEMPAEQLMMRMLASLS  270 (464)
T ss_pred             CCCcCCCcHHHHHhh-cCCCCCceEEEEeCCCCchHHHHHHHHHHHHH-----hCCCeEEEEeccCCHHHHHHHHHHhhC
Confidence            468999999999999 68999999999999999999999999999873     34789999998850             


Q ss_pred             ----------C-chHHHH-----------------------HHHHH----HHHHhhCCCceEEEEcCCchhhhcCcCChH
Q 036464          120 ----------F-YTEQSA-----------------------VINYL----DKFVSEHKDVKVVIIDSIAFHFRHGFVDLA  161 (226)
Q Consensus       120 ----------~-~~~~~~-----------------------~l~~l----~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~  161 (226)
                                . ..+...                       .+..+    .++..+.+++++||||+++-+ +.... ..
T Consensus       271 ~v~~~~i~~~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~-~~~~~-~~  348 (464)
T PRK08840        271 RVDQTKIRTGQLDDEDWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLM-RVPAL-SD  348 (464)
T ss_pred             CCCHHHHhcCCCCHHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhc-CCCCC-CC
Confidence                      0 000000                       01122    222233335899999999954 32111 13


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhHH
Q 036464          162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKAV  213 (226)
Q Consensus       162 ~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~~  213 (226)
                      .|.+++.++.+.||.+|++++|+||+..|+++..+.    .+.+.++|+||+++..
T Consensus       349 ~r~~ei~~isr~LK~lAkel~ipVi~LsQLnR~~e~r~~krP~lsDLreSG~IEqd  404 (464)
T PRK08840        349 NRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQD  404 (464)
T ss_pred             chHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhccccccc
Confidence            477889999999999999999999999999987654    4678899999996543

>PRK06904 replicative DNA helicase; Validated

Probab=99.84  E-value=2.3e-20  Score=168.39  Aligned_cols=154  Identities=20%  Similarity=0.285  Sum_probs=116.6

Q ss_pred             ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-------------
Q 036464           52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-------------  118 (226)
Q Consensus        52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-------------  118 (226)
                      ....++||++.||+++ ||+.+|+++.|.|.||+|||+|++++|.+++.     ..+.+|+||+.|+             
T Consensus       200 ~~~Gi~TG~~~LD~~t-~Gl~~G~LiiIaarPg~GKTafalnia~~~a~-----~~g~~Vl~fSlEMs~~ql~~Rlla~~  273 (472)
T PRK06904        200 GVTGVTTGFTDLDKKT-AGLQPSDLIIVAARPSMGKTTFAMNLCENAAM-----ASEKPVLVFSLEMPAEQIMMRMLASL  273 (472)
T ss_pred             CCCCccCChHHHHHHH-hccCCCcEEEEEeCCCCChHHHHHHHHHHHHH-----hcCCeEEEEeccCCHHHHHHHHHHhh
Confidence            3568999999999998 69999999999999999999999999999873     2477999999885             


Q ss_pred             ----------c-Cc-hHHHH-------H----------------HHHH----HHHHhhCCCceEEEEcCCchhhhcCcCC
Q 036464          119 ----------G-FY-TEQSA-------V----------------INYL----DKFVSEHKDVKVVIIDSIAFHFRHGFVD  159 (226)
Q Consensus       119 ----------~-~~-~~~~~-------~----------------l~~l----~~~l~~~~~~~lvVIDsl~~l~~~~~~~  159 (226)
                                . .. .+...       .                +..+    .++..+.+++++||||+++-+-....  
T Consensus       274 s~v~~~~i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~--  351 (472)
T PRK06904        274 SRVDQTKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGF--  351 (472)
T ss_pred             CCCCHHHhccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCC--
Confidence                      0 11 01000       0                1122    23333334689999999995432221  


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhHH
Q 036464          160 LALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKAV  213 (226)
Q Consensus       160 ~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~~  213 (226)
                      ...|..++.++.+.||.+|++++|+||+..|+++..+.    .+.+.++|+||+++..
T Consensus       352 ~~~r~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSG~IEqd  409 (472)
T PRK06904        352 EDNRTLEIAEISRSLKALAKELKVPVVALSQLNRTLENRGDKRPVNSDLRESGSIEQD  409 (472)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhCCeEEEEEecCchhhccCCCCCchHHHhhcCccccC
Confidence            13577889999999999999999999999999986643    4677889999997543

>PRK05636 replicative DNA helicase; Provisional

Probab=99.84  E-value=2e-20  Score=169.75  Aligned_cols=153  Identities=19%  Similarity=0.302  Sum_probs=115.7

Q ss_pred             cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------
Q 036464           53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-------------  119 (226)
Q Consensus        53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-------------  119 (226)
                      ...++||++.||+++ ||+.+|+++.|.|+||+|||+|+++++.+++.     ..+.+|+|++.|+.             
T Consensus       245 ~~Gi~TG~~~LD~~t-~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~-----~~g~~v~~fSlEMs~~ql~~R~ls~~s  318 (505)
T PRK05636        245 ATGIPTGFKDLDDLT-NGLRGGQMIIVAARPGVGKSTLALDFMRSASI-----KHNKASVIFSLEMSKSEIVMRLLSAEA  318 (505)
T ss_pred             CCceecChHHHhhhc-CCCCCCceEEEEeCCCCCHHHHHHHHHHHHHH-----hCCCeEEEEEeeCCHHHHHHHHHHHhc
Confidence            467999999999988 68999999999999999999999999998864     34679999998750             


Q ss_pred             -----------CchHHHH----------------------HHHHHHHHH---hhCCCceEEEEcCCchhhhcCcCChHHH
Q 036464          120 -----------FYTEQSA----------------------VINYLDKFV---SEHKDVKVVIIDSIAFHFRHGFVDLALR  163 (226)
Q Consensus       120 -----------~~~~~~~----------------------~l~~l~~~l---~~~~~~~lvVIDsl~~l~~~~~~~~~~r  163 (226)
                                 ...+...                      .+..+...+   +...++++||||+++.+- .. .....|
T Consensus       319 ~v~~~~i~~g~l~~~e~~~~~~a~~~l~~~~l~I~d~~~~ti~~I~~~~r~~~~~~~~~lvvIDYLql~~-~~-~~~~~r  396 (505)
T PRK05636        319 EVRLSDMRGGKMDEDAWEKLVQRLGKIAQAPIFIDDSANLTMMEIRSKARRLKQKHDLKLIVVDYLQLMS-SG-KRVESR  396 (505)
T ss_pred             CCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchHhcC-CC-CCCCcH
Confidence                       0011100                      012222222   122479999999999553 21 112347


Q ss_pred             HHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhHH
Q 036464          164 TRVLSGIALKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKAV  213 (226)
Q Consensus       164 ~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~~  213 (226)
                      .+.+.++.+.||.+|++++|+||++.|+++..+.    .+.+.++|+||+++..
T Consensus       397 ~~ei~~isr~LK~lAkel~ipVi~lsQLnR~~e~r~dkrP~lsDLreSG~IEqd  450 (505)
T PRK05636        397 QQEVSEFSRQLKLLAKELDVPLIAISQLNRGPESRTDKRPQLADLRESGSLEQD  450 (505)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeEEEEeecCccccccCCCCCcHHHHhhccccccc
Confidence            7889999999999999999999999999987654    4777889999996543

>PRK06749 replicative DNA helicase; Provisional

Probab=99.84  E-value=4.3e-20  Score=164.86  Aligned_cols=154  Identities=17%  Similarity=0.244  Sum_probs=115.3

Q ss_pred             ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-------------
Q 036464           52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-------------  118 (226)
Q Consensus        52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-------------  118 (226)
                      ....++||++.||+++ ||+.+|+++.|.|.||.|||+|+++++.+++      ..+.+|+|++.|+             
T Consensus       165 ~~~Gi~TG~~~LD~~t-~Gl~~G~LiiIaarPgmGKTafal~ia~~~a------~~g~~v~~fSlEMs~~ql~~R~ls~~  237 (428)
T PRK06749        165 EITGIETGYTSLNKMT-CGLQEGDFVVLGARPSMGKTAFALNVGLHAA------KSGAAVGLFSLEMSSKQLLKRMASCV  237 (428)
T ss_pred             CCCCccCCcHHHHHHh-CCCCCCcEEEEEeCCCCCchHHHHHHHHHHH------hcCCCEEEEEeeCCHHHHHHHHHHhc
Confidence            3567999999999998 5899999999999999999999999999997      3578999999875             


Q ss_pred             --------cC----c-hHHHHH----------------------HHHHHH----HHhhCCC-ceEEEEcCCchhhhcCcC
Q 036464          119 --------GF----Y-TEQSAV----------------------INYLDK----FVSEHKD-VKVVIIDSIAFHFRHGFV  158 (226)
Q Consensus       119 --------~~----~-~~~~~~----------------------l~~l~~----~l~~~~~-~~lvVIDsl~~l~~~~~~  158 (226)
                              .+    . .++...                      +.++..    +..+.+. ..+||||+++.+- ....
T Consensus       238 ~~i~~~~l~~~~~~l~~~e~~~~~~a~~~l~~~~i~i~d~~~~t~~~I~~~~r~~~~~~~~~~~lvvIDyLqli~-~~~~  316 (428)
T PRK06749        238 GEVSGGRLKNPKHRFAMEDWEKVSKAFAEIGELPLEIYDNAGVTVQDIWMQTRKLKRKHGDKKILIIVDYLQLIT-GDPK  316 (428)
T ss_pred             cCCCHHHHhcCcccCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCcEEEEeChhhcC-CCCC
Confidence                    00    0 111000                      122332    2223322 5599999999543 2111


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhHH
Q 036464          159 DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKAV  213 (226)
Q Consensus       159 ~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~~  213 (226)
                      ....|...+.++.+.||.+|++++|+||+++|+++..+.    .|.+.++|+||+++..
T Consensus       317 ~~~~r~~ei~~isr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLR~SG~IEqd  375 (428)
T PRK06749        317 HKGNRFQEISEISRKLKLLARELNVCVVALSQLSRSVESRQDKRPLLSDLRETGQIEQD  375 (428)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhccccccc
Confidence            113477889999999999999999999999999987653    5668899999997554

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=99.83  E-value=1.8e-20  Score=154.25  Aligned_cols=125  Identities=26%  Similarity=0.332  Sum_probs=94.4

Q ss_pred             eecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCC-CCeEEEEeccc-------------cC-
Q 036464           56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL-GGKAIYIGKCL-------------GF-  120 (226)
Q Consensus        56 i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~-~~~vlyi~~e~-------------~~-  120 (226)
                      ++||++.||++|+||+|+|++++|.|+||+|||+|++|++.+.+      .. +.+|+||+++.             ++ 
T Consensus         1 V~TGI~~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~------~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~   74 (226)
T PF06745_consen    1 VPTGIPGLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGL------KNFGEKVLYVSFEEPPEELIENMKSFGWDL   74 (226)
T ss_dssp             E--SSTTHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHH------HHHT--EEEEESSS-HHHHHHHHHTTTS-H
T ss_pred             CCCCchhHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhh------hhcCCcEEEEEecCCHHHHHHHHHHcCCcH
Confidence            68999999999999999999999999999999999999999887      46 89999999763             00 


Q ss_pred             --------------c--------hHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHH
Q 036464          121 --------------Y--------TEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLA  178 (226)
Q Consensus       121 --------------~--------~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la  178 (226)
                                    +        .+...+...+.+.+++. +++++||||++.+...  .+    ...+..++..|.+..
T Consensus        75 ~~~~~~g~l~~~d~~~~~~~~~~~~~~~l~~~i~~~i~~~-~~~~vVIDsls~l~~~--~~----~~~~r~~l~~l~~~l  147 (226)
T PF06745_consen   75 EEYEDSGKLKIIDAFPERIGWSPNDLEELLSKIREAIEEL-KPDRVVIDSLSALLLY--DD----PEELRRFLRALIKFL  147 (226)
T ss_dssp             HHHHHTTSEEEEESSGGGST-TSCCHHHHHHHHHHHHHHH-TSSEEEEETHHHHTTS--SS----GGGHHHHHHHHHHHH
T ss_pred             HHHhhcCCEEEEecccccccccccCHHHHHHHHHHHHHhc-CCCEEEEECHHHHhhc--CC----HHHHHHHHHHHHHHH
Confidence                          0        01123456667777765 6799999999988221  12    122446778888888


Q ss_pred             HHcCCEEEEeccccc
Q 036464          179 KKFSLALLEPNLATT  193 (226)
Q Consensus       179 ~~~~~~vi~~nq~~~  193 (226)
                      ++.++++++|.|...
T Consensus       148 ~~~~~t~llt~~~~~  162 (226)
T PF06745_consen  148 KSRGVTTLLTSEMPS  162 (226)
T ss_dssp             HHTTEEEEEEEEESS
T ss_pred             HHCCCEEEEEEcccc
Confidence            999999999999754

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=99.83  E-value=1.6e-20  Score=155.82  Aligned_cols=143  Identities=22%  Similarity=0.340  Sum_probs=103.2

Q ss_pred             hHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc----------------------
Q 036464           62 DLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG----------------------  119 (226)
Q Consensus        62 ~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~----------------------  119 (226)
                      +||.+++ |+++|++++|+|+||+|||+|+++++.+.+.     ..+.+|+|++.|..                      
T Consensus         2 ~LD~~~~-Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~-----~~g~~vly~s~E~~~~~~~~r~~~~~~~~~~~~~~~   75 (242)
T cd00984           2 DLDNLTG-GLQPGDLIIIAARPSMGKTAFALNIAENIAK-----KQGKPVLFFSLEMSKEQLLQRLLASESGISLSKLRT   75 (242)
T ss_pred             chhhhhc-CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH-----hCCCceEEEeCCCCHHHHHHHHHHHhcCCCHHHHhc
Confidence            6899995 9999999999999999999999999999884     23889999998740                      


Q ss_pred             --CchHHH--------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHH
Q 036464          120 --FYTEQS--------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIA  171 (226)
Q Consensus       120 --~~~~~~--------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~  171 (226)
                        ...+..                          .+.+.+.++..+. ++++||||+++.+....  ....+...+..++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~i~~~~~~~-~~~~vvID~l~~l~~~~--~~~~~~~~~~~~~  152 (242)
T cd00984          76 GSLSDEDWERLAEAIGELKELPIYIDDSSSLTVSDIRSRARRLKKEH-GLGLIVIDYLQLMSGSK--KKGNRQQEVAEIS  152 (242)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCEEEeCCCCCCHHHHHHHHHHHHHhc-CCCEEEEcCchhcCCCC--CCCCHHHHHHHHH
Confidence              000000                          0122233333333 89999999999654332  1223556788999


Q ss_pred             HHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhHH
Q 036464          172 LKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKAV  213 (226)
Q Consensus       172 ~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~~  213 (226)
                      +.|+++|+++|+++|+++|+++...+    .+.+.+++.||.....
T Consensus       153 ~~L~~la~~~~~~ii~~~q~~r~~~~~~~~~~~~~~~~gS~~i~~~  198 (242)
T cd00984         153 RSLKLLAKELNVPVIALSQLSRGVESRADKRPMLSDLRESGSIEQD  198 (242)
T ss_pred             HHHHHHHHHhCCeEEEecccChhhhccCCCCCCHHHHhhhcccccC
Confidence            99999999999999999999975432    3344556666665443

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=99.82  E-value=2.2e-19  Score=148.55  Aligned_cols=127  Identities=23%  Similarity=0.268  Sum_probs=94.4

Q ss_pred             ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-------------
Q 036464           52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-------------  118 (226)
Q Consensus        52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-------------  118 (226)
                      ...+++||++.||++|+||+|+|++++|+|+||+|||+|+++++...+      ..+++|+|++.|.             
T Consensus         3 ~~~~~~tGi~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~------~~g~~~~y~~~e~~~~~~~~~~~~~g   76 (234)
T PRK06067          3 KKEIISTGNEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGAL------KQGKKVYVITTENTSKSYLKQMESVK   76 (234)
T ss_pred             CceEEecCCHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHH------hCCCEEEEEEcCCCHHHHHHHHHHCC
Confidence            356899999999999999999999999999999999999999998876      4689999999763             


Q ss_pred             cCchH-----------------------HHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHH
Q 036464          119 GFYTE-----------------------QSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLM  175 (226)
Q Consensus       119 ~~~~~-----------------------~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~  175 (226)
                      .+..+                       .-..++.+.+.+++ .+++++||||++++....  +    ...+.+++..++
T Consensus        77 ~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~-~~~~~iviDs~t~~~~~~--~----~~~~~~~l~~l~  149 (234)
T PRK06067         77 IDISDFFLWGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKS-KREDVIIIDSLTIFATYA--E----EDDILNFLTEAK  149 (234)
T ss_pred             CChhHHHhCCCceEEeccccccccCcchHHHHHHHHHHHHHh-cCCCEEEEecHHHHHhcC--C----HHHHHHHHHHHH
Confidence            00000                       01234455555555 378999999999764321  1    123556666776


Q ss_pred             HHHHHcCCEEEEecccc
Q 036464          176 NLAKKFSLALLEPNLAT  192 (226)
Q Consensus       176 ~la~~~~~~vi~~nq~~  192 (226)
                      .+++ .+++++++.|..
T Consensus       150 ~l~~-~g~tvllt~~~~  165 (234)
T PRK06067        150 NLVD-LGKTILITLHPY  165 (234)
T ss_pred             HHHh-CCCEEEEEecCC
Confidence            6654 588888888754

>PRK07773 replicative DNA helicase; Validated

Probab=99.82  E-value=1.1e-19  Score=175.12  Aligned_cols=150  Identities=18%  Similarity=0.271  Sum_probs=116.5

Q ss_pred             cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------
Q 036464           53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-------------  119 (226)
Q Consensus        53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-------------  119 (226)
                      ...++||++.||.++ ||+++|++++|+|+||+|||+|+++++.+++.     ..+.+|+||+.|+.             
T Consensus       197 ~~Gi~TG~~~LD~l~-~Gl~~G~livIagrPg~GKT~fal~ia~~~a~-----~~~~~V~~fSlEms~~ql~~R~~s~~~  270 (886)
T PRK07773        197 ARGVPTGFTELDAMT-NGLHPGQLIIVAARPSMGKTTFGLDFARNCAI-----RHRLAVAIFSLEMSKEQLVMRLLSAEA  270 (886)
T ss_pred             CCCccCChhHhcccc-CCCCCCcEEEEEeCCCCCcHHHHHHHHHHHHH-----hcCCeEEEEecCCCHHHHHHHHHHHhc
Confidence            568999999999999 89999999999999999999999999999874     34689999998850             


Q ss_pred             -----------CchHHH--------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHH
Q 036464          120 -----------FYTEQS--------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLAL  162 (226)
Q Consensus       120 -----------~~~~~~--------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~  162 (226)
                                 ...++.                          .+...+.++.++ .++++||||+++.+- .. ....+
T Consensus       271 ~i~~~~i~~g~l~~~~~~~~~~a~~~l~~~~i~i~d~~~~~i~~i~~~~r~~~~~-~~~~lvvIDyLql~~-~~-~~~~~  347 (886)
T PRK07773        271 KIKLSDMRSGRMSDDDWTRLARAMGEISEAPIFIDDTPNLTVMEIRAKARRLRQE-ANLGLIVVDYLQLMT-SG-KKYEN  347 (886)
T ss_pred             CCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchhhcC-CC-CCCCC
Confidence                       000010                          011122233333 379999999999543 22 12235


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC----CCCCcCCcCCCCchh
Q 036464          163 RTRVLSGIALKLMNLAKKFSLALLEPNLATTANL----AESCLTCLRDSGSRK  211 (226)
Q Consensus       163 r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~----~~~~~~~~~~sg~~~  211 (226)
                      |.+.+.++.+.||.+|++++|+||+++|+++..+    ..+.+.++|+||...
T Consensus       348 r~~ei~~isr~LK~lAkel~vpvi~lsQLnR~~e~r~~krP~lsDlres~~~~  400 (886)
T PRK07773        348 RQQEVSEISRHLKLLAKELEVPVVALSQLSRGVEQRTDKRPMLSDLRESGCLT  400 (886)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcEEEecccCcchhccCCCCCCHHHHhhcCccc
Confidence            7788999999999999999999999999998764    457788999999865

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=99.82  E-value=2e-19  Score=163.22  Aligned_cols=128  Identities=19%  Similarity=0.206  Sum_probs=102.2

Q ss_pred             ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH------
Q 036464           52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS------  125 (226)
Q Consensus        52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~------  125 (226)
                      ...+++||+++||++|+||+++|++++|.||||+|||+|++|++.+.+      ..+.+|+|++.|.  ..+++      
T Consensus       241 ~~~~~~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~------~~ge~~~y~s~eE--s~~~i~~~~~~  312 (484)
T TIGR02655       241 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC------ANKERAILFAYEE--SRAQLLRNAYS  312 (484)
T ss_pred             cccccCCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH------HCCCeEEEEEeeC--CHHHHHHHHHH
Confidence            456899999999999999999999999999999999999999999987      5788999999872  22221      


Q ss_pred             ---------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHH
Q 036464          126 ---------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLA  178 (226)
Q Consensus       126 ---------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la  178 (226)
                                                 ..++.+.+.+++. ++++|||||++.+... ...     .+..+++..|.+++
T Consensus       313 lg~~~~~~~~~g~l~~~~~~p~~~~~~~~~~~i~~~i~~~-~~~~vvIDsi~~~~~~-~~~-----~~~r~~~~~l~~~l  385 (484)
T TIGR02655       313 WGIDFEEMEQQGLLKIICAYPESAGLEDHLQIIKSEIADF-KPARIAIDSLSALARG-VSN-----NAFRQFVIGVTGYA  385 (484)
T ss_pred             cCCChHHHhhCCcEEEEEcccccCChHHHHHHHHHHHHHc-CCCEEEEcCHHHHHHh-cCH-----HHHHHHHHHHHHHH
Confidence                                       2344555555554 7899999999987653 321     22356777888999


Q ss_pred             HHcCCEEEEecccccc
Q 036464          179 KKFSLALLEPNLATTA  194 (226)
Q Consensus       179 ~~~~~~vi~~nq~~~~  194 (226)
                      ++.|+++++|+.....
T Consensus       386 k~~~it~~~t~~~~~~  401 (484)
T TIGR02655       386 KQEEITGFFTNTSDQF  401 (484)
T ss_pred             hhCCCeEEEeeccccc
Confidence            9999999999887653

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=99.81  E-value=3.8e-19  Score=146.54  Aligned_cols=125  Identities=20%  Similarity=0.279  Sum_probs=93.6

Q ss_pred             ceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------Cc
Q 036464           55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-------------FY  121 (226)
Q Consensus        55 ~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-------------~~  121 (226)
                      +++||++.||++++||+++|+++.|.|+||+|||+|+++++.+.+      ..+.+|+|++.|..             ++
T Consensus         1 ri~tGi~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~------~~g~~~~~is~e~~~~~i~~~~~~~g~~~   74 (229)
T TIGR03881         1 RLSTGVEGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGL------RDGDPVIYVTTEESRESIIRQAAQFGMDF   74 (229)
T ss_pred             CcCCChhhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHH------hcCCeEEEEEccCCHHHHHHHHHHhCCCH
Confidence            479999999999999999999999999999999999999998876      35789999997630             00


Q ss_pred             hH---------------------------HHHHHHHHHHHHhhCC-CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHH
Q 036464          122 TE---------------------------QSAVINYLDKFVSEHK-DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALK  173 (226)
Q Consensus       122 ~~---------------------------~~~~l~~l~~~l~~~~-~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~  173 (226)
                      .+                           .-+....+.+.+++.. +++++||||++.++..   +..    ..++++..
T Consensus        75 ~~~~~~~~l~i~d~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~---~~~----~~r~~~~~  147 (229)
T TIGR03881        75 EKAIEEGKLVIIDALMKEKEDEWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLD---KPA----MARKYSYY  147 (229)
T ss_pred             HHHhhcCCEEEEEccccccccccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhcc---ChH----HHHHHHHH
Confidence            00                           0012233444444432 5789999999987542   111    12466778


Q ss_pred             HHHHHHHcCCEEEEecccc
Q 036464          174 LMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       174 L~~la~~~~~~vi~~nq~~  192 (226)
                      |+++++++|+++++|+|..
T Consensus       148 l~~~l~~~~~tvil~~~~~  166 (229)
T TIGR03881       148 LKRVLNRWNFTILLTSQYA  166 (229)
T ss_pred             HHHHHHhCCCEEEEEeccc
Confidence            9999999999999999964

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]

Probab=99.81  E-value=3e-19  Score=157.52  Aligned_cols=151  Identities=20%  Similarity=0.291  Sum_probs=120.6

Q ss_pred             cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc--------------
Q 036464           53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL--------------  118 (226)
Q Consensus        53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~--------------  118 (226)
                      ...++||+..||+++. |+.+|+++.+.|.||.|||+||+++|.+++.     ..+.+|++|+.|+              
T Consensus       176 ~~Gi~tgf~~LD~~t~-G~~~~dLii~AaRP~mGKTafalnia~n~a~-----~~~~~v~iFSLEM~~eql~~R~Ls~~s  249 (435)
T COG0305         176 LIGVPTGFTDLDEITS-GFRPGDLIIVAARPGMGKTALALNIALNAAA-----DGRKPVAIFSLEMSEEQLVMRLLSSES  249 (435)
T ss_pred             CcccccCchhhHHHhc-CCccCCEEEEccCCCCChHHHHHHHHHHHHH-----hcCCCeEEEEccCCHHHHHHHhhcccc
Confidence            5889999999999995 5999999999999999999999999999985     4567799999875              


Q ss_pred             ----------cCchHHH--------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHH
Q 036464          119 ----------GFYTEQS--------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLAL  162 (226)
Q Consensus       119 ----------~~~~~~~--------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~  162 (226)
                                ....+..                          ++...+.++-.++ ++++++||+++-+.... . ...
T Consensus       250 ~v~~~kirtg~l~~~d~~~l~~a~~~l~~~~i~IdD~~~~si~eir~~aRrlk~~~-~l~~i~iDYLqLm~~~~-~-~~~  326 (435)
T COG0305         250 GIESSKLRTGRLSDDEWERLIKAASELSEAPIFIDDTPGLTITEIRSKARRLKLKH-NLGLIVIDYLQLMTGGK-K-SEN  326 (435)
T ss_pred             ccchhccccccccHHHHHHHHHHHHHHhhCCeeecCCCcCCHHHHHHHHHHHHHhc-CccEEEEEEEEeecccc-c-chh
Confidence                      0001100                          1112333333444 69999999999544332 1 256


Q ss_pred             HHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhH
Q 036464          163 RTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKA  212 (226)
Q Consensus       163 r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~  212 (226)
                      |.+.+.++.+.|+.+|++.+++||..+|+++.++.    .|.+.++|.||+++.
T Consensus       327 r~qevs~iSr~LK~lAkEl~vpvialSQLsR~~E~R~dkrP~lSDLRESGsIEQ  380 (435)
T COG0305         327 RKQEVSEISRSLKGLAKELGVPVIALSQLNRSVEQRTDKRPMLSDLRESGALEQ  380 (435)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcEEehhhhcccchhccccCCccccCccCCchhh
Confidence            89999999999999999999999999999998876    588999999999876

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=99.81  E-value=1.4e-19  Score=145.07  Aligned_cols=138  Identities=24%  Similarity=0.318  Sum_probs=84.7

Q ss_pred             cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC----CCCeEEEEecccc---------
Q 036464           53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG----LGGKAIYIGKCLG---------  119 (226)
Q Consensus        53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~----~~~~vlyi~~e~~---------  119 (226)
                      ...++++.+.+|.++.|++++|++++|+|+||+|||+++++++..++...++-+    .+.+|+||+.|..         
T Consensus        11 ~~~~~~~~~~~~~li~g~~~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~rl~   90 (193)
T PF13481_consen   11 FEDLDTGFPPLDWLIDGLLPRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIARRLR   90 (193)
T ss_dssp             --HHHS------EEETTEE-TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHHHHH
T ss_pred             hhhccCCCCCcceeECCcccCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHHHHH
Confidence            455889999999999999999999999999999999999999999985443322    5789999998840         


Q ss_pred             ----Cc--hHHH------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHH
Q 036464          120 ----FY--TEQS------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSG  169 (226)
Q Consensus       120 ----~~--~~~~------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~  169 (226)
                          ..  .+..                        ..++.+.+.+.+.+++++||||+++.+...+..    ....+.+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lvviD~l~~~~~~~~~----~~~~~~~  166 (193)
T PF13481_consen   91 ALLQDYDDDANLFFVDLSNWGCIRLFEPDSGGPLLDEDLEELEAALKELYGPDLVVIDPLQSLHDGDEN----SNSAVAQ  166 (193)
T ss_dssp             HHHTTS-HHHHHHHHHH--E-EE---TTS---TTSHHHHHHHHHHHTT----SEEEEE-GGGG--S-TT-----HHHHHH
T ss_pred             HHhcccCCccceEEeeccccccceeeecccccccchHHHHHHHHHHhhcCCCcEEEEcCHHHHhcCCCC----CHHHHHH
Confidence                00  0000                        123445566666457999999999988865221    2233478


Q ss_pred             HHHHHHHHHHHcCCEEEEecccccc
Q 036464          170 IALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       170 ~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      +++.|+++|+++|++|++++|++|.
T Consensus       167 ~~~~l~~la~~~~~~vi~v~H~~K~  191 (193)
T PF13481_consen  167 LMQELKRLAKEYGVAVILVHHTNKS  191 (193)
T ss_dssp             HHHHHHHHHHHH--EEEEEEEE---
T ss_pred             HHHHHHHHHHHcCCEEEEEECCCCC
Confidence            9999999999999999999999975

>PRK05973 replicative DNA helicase; Provisional

Probab=99.80  E-value=3.8e-19  Score=146.62  Aligned_cols=128  Identities=17%  Similarity=0.202  Sum_probs=94.6

Q ss_pred             HHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH-----------------
Q 036464           63 LDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS-----------------  125 (226)
Q Consensus        63 LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~-----------------  125 (226)
                      .|++. ||+++|++++|.|+||+|||+|++|++.+.+      ..+.+|+||+.|.  ..+++                 
T Consensus        54 ~~~l~-GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a------~~Ge~vlyfSlEe--s~~~i~~R~~s~g~d~~~~~~~  124 (237)
T PRK05973         54 AEELF-SQLKPGDLVLLGARPGHGKTLLGLELAVEAM------KSGRTGVFFTLEY--TEQDVRDRLRALGADRAQFADL  124 (237)
T ss_pred             HHHhc-CCCCCCCEEEEEeCCCCCHHHHHHHHHHHHH------hcCCeEEEEEEeC--CHHHHHHHHHHcCCChHHhccc
Confidence            67755 7999999999999999999999999999987      4688999999874  11110                 


Q ss_pred             ---------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464          126 ---------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL  196 (226)
Q Consensus       126 ---------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~  196 (226)
                               ..-..+.++..+ .++++|||||++.+... .     +...+..++..|+.+++++|++||+++|+++.++
T Consensus       125 ~~~d~~d~~~~~~ii~~l~~~-~~~~lVVIDsLq~l~~~-~-----~~~el~~~~~~Lk~~Ak~~gitvIl~sQl~r~~e  197 (237)
T PRK05973        125 FEFDTSDAICADYIIARLASA-PRGTLVVIDYLQLLDQR-R-----EKPDLSVQVRALKSFARERGLIIVFISQIDRSFD  197 (237)
T ss_pred             eEeecCCCCCHHHHHHHHHHh-hCCCEEEEEcHHHHhhc-c-----cchhHHHHHHHHHHHHHhCCCeEEEEecCccccc
Confidence                     011123333333 36899999999965321 1     1123566778899999999999999999999887


Q ss_pred             CC----CCcCCcCC
Q 036464          197 AE----SCLTCLRD  206 (226)
Q Consensus       197 ~~----~~~~~~~~  206 (226)
                      +.    +.+.++|.
T Consensus       198 ~~~~~~P~laDlR~  211 (237)
T PRK05973        198 PSAKPLPDIRDVRL  211 (237)
T ss_pred             cCCCCCCChhhcCC
Confidence            64    55555554

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=99.79  E-value=1.4e-18  Score=158.90  Aligned_cols=128  Identities=23%  Similarity=0.298  Sum_probs=101.9

Q ss_pred             ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHH-------
Q 036464           52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-------  124 (226)
Q Consensus        52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~-------  124 (226)
                      +..+++||++.||.+|+||+++|++++|.|+||+|||+|+++++.+.+      ..+.+|+||+.|.  ..++       
T Consensus       251 ~~~~~~tGi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~------~~g~~~~yis~e~--~~~~i~~~~~~  322 (509)
T PRK09302        251 SNERISSGVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAAC------RRGERCLLFAFEE--SRAQLIRNARS  322 (509)
T ss_pred             ccccccCCcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHH------hCCCcEEEEEecC--CHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999999887      5789999999763  1111       


Q ss_pred             --------------------------HHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHH
Q 036464          125 --------------------------SAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLA  178 (226)
Q Consensus       125 --------------------------~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la  178 (226)
                                                -..+..+.+.+++. ++++|||||++.++...  +    ...+.+.+..|.+++
T Consensus       323 ~g~~~~~~~~~g~l~i~~~~~~~~~~~~~~~~i~~~i~~~-~~~~vVIDslt~l~~~~--~----~~~~~~~l~~l~~~~  395 (509)
T PRK09302        323 WGIDLEKMEEKGLLKIICARPESYGLEDHLIIIKREIEEF-KPSRVAIDPLSALARGG--S----LNEFRQFVIRLTDYL  395 (509)
T ss_pred             cCCChHHHhhcCCceeecCCcccCCHHHHHHHHHHHHHHc-CCCEEEEcCHHHHHHhC--C----HHHHHHHHHHHHHHH
Confidence                                      01234455555554 78999999999876532  2    123467778888999


Q ss_pred             HHcCCEEEEecccccc
Q 036464          179 KKFSLALLEPNLATTA  194 (226)
Q Consensus       179 ~~~~~~vi~~nq~~~~  194 (226)
                      +++|+++|+|+|+...
T Consensus       396 k~~~~t~l~t~~~~~~  411 (509)
T PRK09302        396 KSEEITGLFTNLTPDF  411 (509)
T ss_pred             HhCCCeEEEEeccccc
Confidence            9999999999998653

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=99.78  E-value=2.3e-18  Score=157.50  Aligned_cols=132  Identities=19%  Similarity=0.244  Sum_probs=98.3

Q ss_pred             cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc------------
Q 036464           51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL------------  118 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~------------  118 (226)
                      ....+++||++.||++|+||+|+|++++|+|+||+|||+|++|++.+.+.     ..+.+|+||+.|.            
T Consensus         8 ~~~~ri~TGI~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~-----~~ge~~lyis~ee~~~~i~~~~~~~   82 (509)
T PRK09302          8 PGIEKLPTGIEGFDDITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIK-----RFDEPGVFVTFEESPEDIIRNVASF   82 (509)
T ss_pred             CCCccccCCchhHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-----hcCCCEEEEEccCCHHHHHHHHHHc
Confidence            35679999999999999999999999999999999999999999988873     2278999999873            


Q ss_pred             -cCch--------------------------HHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHH
Q 036464          119 -GFYT--------------------------EQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIA  171 (226)
Q Consensus       119 -~~~~--------------------------~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~  171 (226)
                       ++..                          +.-..+..+.+.+++. +++.+||||+++++.. ...    ...+.+.+
T Consensus        83 g~d~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~-~~~~vVIDSls~l~~~-~d~----~~~~r~~l  156 (509)
T PRK09302         83 GWDLQKLIDEGKLFILDASPDPSEQEEAGEYDLEALFIRIEYAIDKI-GAKRVVLDSIEALFSG-FSN----EAVVRREL  156 (509)
T ss_pred             CCCHHHHhhCCeEEEEecCcccccccccccccHHHHHHHHHHHHHhh-CCCEEEECCHHHHHhh-ccC----HHHHHHHH
Confidence             0000                          0012344556666654 7899999999986542 122    12233455


Q ss_pred             HHHHHHHHHcCCEEEEeccccc
Q 036464          172 LKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       172 ~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      ..|.+.+++.|+++++|.|...
T Consensus       157 ~~L~~~Lk~~g~TvLlt~~~~~  178 (509)
T PRK09302        157 RRLFAWLKQKGVTAVITGERGD  178 (509)
T ss_pred             HHHHHHHHhCCCEEEEEECCcc
Confidence            5666667789999999998764

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=99.77  E-value=6.3e-18  Score=138.89  Aligned_cols=123  Identities=25%  Similarity=0.231  Sum_probs=87.2

Q ss_pred             CchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-------------cCch---
Q 036464           59 SCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-------------GFYT---  122 (226)
Q Consensus        59 g~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-------------~~~~---  122 (226)
                      |++.||++++||+|+|++++|.|+||+|||+||++++.+.+      ..+++|+|++.|.             .+..   
T Consensus         1 Gi~~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~------~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~   74 (224)
T TIGR03880         1 GIPGLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGL------KNGEKAMYISLEEREERILGYAKSKGWDLEDYI   74 (224)
T ss_pred             CchhhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHH------hCCCeEEEEECCCCHHHHHHHHHHcCCChHHHH
Confidence            78999999999999999999999999999999999999887      4689999999873             0000   


Q ss_pred             -----------HHH-----HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEE
Q 036464          123 -----------EQS-----AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALL  186 (226)
Q Consensus       123 -----------~~~-----~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi  186 (226)
                                 ...     .....+..++++. +++++||||++.+. ........+...+.++++.    .++.|++++
T Consensus        75 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~i~~~-~~~~vVIDsls~l~-~~~~~~~~~r~~l~~l~~~----lk~~~~tvl  148 (224)
T TIGR03880        75 DKSLYIVRLDPSDFKTSLNRIKNELPILIKEL-GASRVVIDPISLLE-TLFDDDAERRTELFRFYSS----LRETGVTTI  148 (224)
T ss_pred             hCCeEEEecCHHHHHhhHHHHHHHHHHHHHHh-CCCEEEEcChHHHh-hhcCCHHHHHHHHHHHHHH----HHhCCCEEE
Confidence                       000     1223344455554 68999999999762 2222323333333333333    357899999


Q ss_pred             Eeccccc
Q 036464          187 EPNLATT  193 (226)
Q Consensus       187 ~~nq~~~  193 (226)
                      ++.|...
T Consensus       149 l~s~~~~  155 (224)
T TIGR03880       149 LTSEADK  155 (224)
T ss_pred             EEEcccC
Confidence            9999764

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=99.74  E-value=3.9e-17  Score=137.18  Aligned_cols=129  Identities=27%  Similarity=0.333  Sum_probs=98.6

Q ss_pred             cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-------------c
Q 036464           53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-------------G  119 (226)
Q Consensus        53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-------------~  119 (226)
                      ..+++||++.||++++||+|+|++++|+|+||+|||+|++|++.+.+      ..+.+|+||+.+.             .
T Consensus         2 ~~~~~TGI~glD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~------~~ge~vlyvs~~e~~~~l~~~~~~~g~   75 (260)
T COG0467           2 MERIPTGIPGLDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGA------REGEPVLYVSTEESPEELLENARSFGW   75 (260)
T ss_pred             CccccCCCcchHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHH------hcCCcEEEEEecCCHHHHHHHHHHcCC
Confidence            36799999999999999999999999999999999999999999998      5689999999652             0


Q ss_pred             C-------------------c----------hHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHH
Q 036464          120 F-------------------Y----------TEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGI  170 (226)
Q Consensus       120 ~-------------------~----------~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~  170 (226)
                      +                   .          ...-.+.+.+.+..... +...+||||++.+.... .+    ......+
T Consensus        76 d~~~~~~~g~l~i~d~~~~~~~~~~~~~~~~~~~~~l~~~I~~~~~~~-~~~~~ViDsi~~~~~~~-~~----~~~~r~~  149 (260)
T COG0467          76 DLEVYIEKGKLAILDAFLSEKGLVSIVVGDPLDLEELLDRIREIVEKE-GADRVVIDSITELTLYL-ND----PALVRRI  149 (260)
T ss_pred             CHHHHhhcCCEEEEEccccccccccccccCCccHHHHHHHHHHHHHHh-CCCEEEEeCCchHhhhc-Cc----hHHHHHH
Confidence            0                   0          01112345566666665 58999999999544221 11    1122577


Q ss_pred             HHHHHHHHHHcCCEEEEeccccc
Q 036464          171 ALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       171 ~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +..+.++.++.+++.+++.+...
T Consensus       150 ~~~l~~~~~~~~~t~~~~~~~~~  172 (260)
T COG0467         150 LLLLKRFLKKLGVTSLLTTEAPV  172 (260)
T ss_pred             HHHHHHHHHhCCCEEEEEecccc
Confidence            88899999999999999887643

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=99.73  E-value=2.7e-17  Score=149.42  Aligned_cols=129  Identities=22%  Similarity=0.277  Sum_probs=89.7

Q ss_pred             ceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-------------cCc
Q 036464           55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-------------GFY  121 (226)
Q Consensus        55 ~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-------------~~~  121 (226)
                      +++||++.||++|+||+|+|++++|.|+||+|||+||+|++.+.+.     ..+++++||+.|.             ++.
T Consensus         2 r~~TGI~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~-----~~ge~~lyvs~eE~~~~l~~~~~~~G~~~   76 (484)
T TIGR02655         2 KIRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII-----HFDEPGVFVTFEESPQDIIKNARSFGWDL   76 (484)
T ss_pred             cCCCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH-----hCCCCEEEEEEecCHHHHHHHHHHcCCCH
Confidence            6899999999999999999999999999999999999999988652     2378999999762             000


Q ss_pred             hH--------------------------HHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHH
Q 036464          122 TE--------------------------QSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLM  175 (226)
Q Consensus       122 ~~--------------------------~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~  175 (226)
                      .+                          .-..++.+...++.. +++.|+|||+.+++.. .+......+   .+.. +.
T Consensus        77 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~ls~g-~~qRVvIDSl~aL~~~-~~~~~~~r~---~l~~-Li  150 (484)
T TIGR02655        77 QKLVDEGKLFILDASPDPEGQDVVGGFDLSALIERINYAIRKY-KAKRVSIDSVTAVFQQ-YDAVSVVRR---EIFR-LV  150 (484)
T ss_pred             HHHhhcCceEEEecCchhccccccccCCHHHHHHHHHHHHHHh-CCcEEEEeehhHhhhh-cCchHHHHH---HHHH-HH
Confidence            00                          011233444455543 7899999999976532 122111111   2222 33


Q ss_pred             HHHHHcCCEEEEecccccc
Q 036464          176 NLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       176 ~la~~~~~~vi~~nq~~~~  194 (226)
                      +..++.++|+++|.|....
T Consensus       151 ~~L~~~g~TvLLtsh~~~~  169 (484)
T TIGR02655       151 ARLKQIGVTTVMTTERIEE  169 (484)
T ss_pred             HHHHHCCCEEEEEecCccc
Confidence            3335689999999987653

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.68  E-value=8.6e-16  Score=122.70  Aligned_cols=125  Identities=22%  Similarity=0.308  Sum_probs=96.6

Q ss_pred             CceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc--cCch---------
Q 036464           54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL--GFYT---------  122 (226)
Q Consensus        54 ~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~--~~~~---------  122 (226)
                      ..+++|-++||+-|+||+|-|+++.|-|+.|+|||.|+++++.-.+      ..+.++.|+++|.  ..+.         
T Consensus         8 ~ii~~gndelDkrLGGGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L------~~g~~v~yvsTe~T~refi~qm~sl~yd   81 (235)
T COG2874           8 KIIKSGNDELDKRLGGGIPVGSLILIEGDNGTGKSVLSQRFAYGFL------MNGYRVTYVSTELTVREFIKQMESLSYD   81 (235)
T ss_pred             hhccCCcHHHHhhccCCCccCeEEEEECCCCccHHHHHHHHHHHHH------hCCceEEEEEechhHHHHHHHHHhcCCC
Confidence            3599999999999999999999999999999999999999999988      6889999999884  1111         


Q ss_pred             -------------------------HHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHH
Q 036464          123 -------------------------EQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNL  177 (226)
Q Consensus       123 -------------------------~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~l  177 (226)
                                               ..-.+++.+-+.++.. +-+++||||++.+...+      ....+.+++..++++
T Consensus        82 v~~~~l~G~l~~~~~~~~~~~~~~~~~~~~L~~l~~~~k~~-~~dViIIDSls~~~~~~------~~~~vl~fm~~~r~l  154 (235)
T COG2874          82 VSDFLLSGRLLFFPVNLEPVNWGRRSARKLLDLLLEFIKRW-EKDVIIIDSLSAFATYD------SEDAVLNFMTFLRKL  154 (235)
T ss_pred             chHHHhcceeEEEEecccccccChHHHHHHHHHHHhhHHhh-cCCEEEEecccHHhhcc------cHHHHHHHHHHHHHH
Confidence                                     1113455555555543 67999999999766443      234577899999999


Q ss_pred             HHHcCCEEEEecccc
Q 036464          178 AKKFSLALLEPNLAT  192 (226)
Q Consensus       178 a~~~~~~vi~~nq~~  192 (226)
                      +. .|-+||+|-|..
T Consensus       155 ~d-~gKvIilTvhp~  168 (235)
T COG2874         155 SD-LGKVIILTVHPS  168 (235)
T ss_pred             Hh-CCCEEEEEeChh
Confidence            96 566666665554

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=99.67  E-value=7.9e-16  Score=127.08  Aligned_cols=126  Identities=21%  Similarity=0.259  Sum_probs=88.6

Q ss_pred             cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHH--------
Q 036464           53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ--------  124 (226)
Q Consensus        53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~--------  124 (226)
                      ...|.++++.||+.++||+++|+++.|.|+||+|||+|+++++...+      ..+.+++|++++.  ..++        
T Consensus         3 ~~~~~~~~~~ld~~l~ggi~~g~~~~i~G~~G~GKTtl~~~~~~~~~------~~g~~~~yi~~e~--~~~~~~~~~~~~   74 (230)
T PRK08533          3 LAKIELSRDELHKRLGGGIPAGSLILIEGDESTGKSILSQRLAYGFL------QNGYSVSYVSTQL--TTTEFIKQMMSL   74 (230)
T ss_pred             eEEEEEEEeeeehhhCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHH------hCCCcEEEEeCCC--CHHHHHHHHHHh
Confidence            45688999999999999999999999999999999999999999876      4678999999763  1111        


Q ss_pred             ----------------------------HHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHH
Q 036464          125 ----------------------------SAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMN  176 (226)
Q Consensus       125 ----------------------------~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~  176 (226)
                                                  ...+..+...... .+++++||||+++.+....+.     ....++.+.+++
T Consensus        75 g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~il~~~~~-~~~~~lVIDe~t~~l~~~~d~-----~~~~~l~~~l~~  148 (230)
T PRK08533         75 GYDINKKLISGKLLYIPVYPLLSGNSEKRKFLKKLMNTRRF-YEKDVIIIDSLSSLISNDASE-----VAVNDLMAFFKR  148 (230)
T ss_pred             CCchHHHhhcCcEEEEEecccccChHHHHHHHHHHHHHHHh-cCCCEEEEECccHHhcCCcch-----HHHHHHHHHHHH
Confidence                                        0111112222222 268999999999876432111     122355666666


Q ss_pred             HHHHcCCEEEEeccccc
Q 036464          177 LAKKFSLALLEPNLATT  193 (226)
Q Consensus       177 la~~~~~~vi~~nq~~~  193 (226)
                      +++ .|++++++++...
T Consensus       149 l~~-~g~tvi~t~~~~~  164 (230)
T PRK08533        149 ISS-LNKVIILTANPKE  164 (230)
T ss_pred             HHh-CCCEEEEEecccc
Confidence            654 4778888877653

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=99.65  E-value=2.7e-15  Score=124.54  Aligned_cols=139  Identities=17%  Similarity=0.160  Sum_probs=98.1

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCC------CCCeEEEEeccccCchHHH----------------------
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG------LGGKAIYIGKCLGFYTEQS----------------------  125 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~------~~~~vlyi~~e~~~~~~~~----------------------  125 (226)
                      |.+..|+|+||+|||+|++++|..++.+.++.+      .+++|+|++.|.  ..+++                      
T Consensus         1 g~~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed--~~~~i~~Rl~~i~~~~~~~~~~~rl~~   78 (239)
T cd01125           1 GYVSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAED--PREEIHRRLEAILQHLEPDDAGDRLFI   78 (239)
T ss_pred             CceeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCC--CHHHHHHHHHHHHhhcCCcCcccceEE
Confidence            678999999999999999999999998776654      568999999884  11000                      


Q ss_pred             -------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEE
Q 036464          126 -------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALL  186 (226)
Q Consensus       126 -------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi  186 (226)
                                         ..++.+.+.+.. .++++||||+++.+......+    ......++..|+++++++|++|+
T Consensus        79 ~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~-~~~~lvviDpl~~~~~~~~~d----~~~~~~~~~~L~~~a~~~g~avl  153 (239)
T cd01125          79 DSGRIQPISIAREGRIIVVPEFERIIEQLLI-RRIDLVVIDPLVSFHGVSEND----NGAMDAVIKALRRIAAQTGAAIL  153 (239)
T ss_pred             eccCCCceecccCCcccccHHHHHHHHHHHh-cCCCEEEECChHHhCCCCcCC----HHHHHHHHHHHHHHHHHhCCEEE
Confidence                               011222222222 479999999998763221112    23455788899999999999999


Q ss_pred             EeccccccCCCCCCcCCcCCCCchhHHHHHhhhh
Q 036464          187 EPNLATTANLAESCLTCLRDSGSRKAVAAAAAQL  220 (226)
Q Consensus       187 ~~nq~~~~~~~~~~~~~~~~sg~~~~~~~~~~~l  220 (226)
                      +++|.+|...... ......+|+..+++.+++.+
T Consensus       154 ~v~H~~K~~~~~~-~~~~~~rGssal~~~~r~~~  186 (239)
T cd01125         154 LVHHVRKGSAKDG-DTQEAARGASALVDGARWVR  186 (239)
T ss_pred             EEeccCcccccCc-ccccccCcHHHHhcccceEE
Confidence            9999998654333 34455678888888777654

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>KOG2859 consensus DNA repair protein, member of the recA/RAD51 family [Replication, recombination and repair]

Probab=99.50  E-value=3e-13  Score=108.25  Aligned_cols=123  Identities=20%  Similarity=0.185  Sum_probs=97.4

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---------------------------cCchH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---------------------------GFYTE  123 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---------------------------~~~~~  123 (226)
                      ...|.++||.||.++|||++..|+++++.+|.++|+.+..|+|||..-                           +..++
T Consensus        35 ~daG~~vEi~Gp~~sgKt~vL~ql~a~CilPk~~GGl~~~VLfidld~~fd~lrL~~~l~hrL~q~~~~e~~~~~c~te~  114 (293)
T KOG2859|consen   35 ADAGTLVEISGPGNSGKTLVLQQLVAHCILPKKFGGLQWSVLFIDLDHKFDRLRLAKSLRHRLKQYSVGEVIAAKCPTEE  114 (293)
T ss_pred             cccCcEEEEeCCCCccHHHHHHHHHHHeecccccCCceeEEEEEeccccccHHHHHHHHHHHHHHhhhhhhhhhcCCcHh
Confidence            347899999999999999999999999999999999999999999541                           11111


Q ss_pred             H-----------------------HHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCCh----HHHHHHHHHHHHHHHH
Q 036464          124 Q-----------------------SAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDL----ALRTRVLSGIALKLMN  176 (226)
Q Consensus       124 ~-----------------------~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~----~~r~~~l~~~~~~L~~  176 (226)
                      +                       +..+.+++..+.+.+.+.++++||+.++++.+....    ......++.+.+.|++
T Consensus       115 ~~eEi~~~Cm~Rf~~v~C~~s~~ll~sL~~l~y~i~~~p~~cll~~DslsaFyW~Dr~~~le~~n~~~~~lr~~~q~LeK  194 (293)
T KOG2859|consen  115 QLEEIAGECMSRFRFVNCFASDDLLTSLIDLRYAIINDPGICLLAMDSLSAFYWLDRPKILEKRNSMYRHLRLLQQRLEK  194 (293)
T ss_pred             HHHHHHHHHHhhEEEEEeeccHHHHHHHHHHHHHHhcCCceeEEeecchhhheeecccchHhhhhhHHHHHHHHHHHHHH
Confidence            1                       222455666666777899999999999998876532    2334557788999999


Q ss_pred             HHHHcCCEEEEeccccc
Q 036464          177 LAKKFSLALLEPNLATT  193 (226)
Q Consensus       177 la~~~~~~vi~~nq~~~  193 (226)
                      +++.+...++.|.++.-
T Consensus       195 L~~d~~lv~~aT~~ti~  211 (293)
T KOG2859|consen  195 LCKDAILVGMATVETIF  211 (293)
T ss_pred             HHhhheeeeeeehhHHH
Confidence            99999999999888753

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=99.50  E-value=1.4e-13  Score=106.22  Aligned_cols=117  Identities=20%  Similarity=0.175  Sum_probs=80.0

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchH--------------------------HHHHHH
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE--------------------------QSAVIN  129 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~--------------------------~~~~l~  129 (226)
                      +++|+|+||+|||+++.+++....      ..+++|+|++.+......                          ......
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~------~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIA------TKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLL   74 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHH------hcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHH
Confidence            478999999999999999999886      368899999977311100                          000111


Q ss_pred             HHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCC
Q 036464          130 YLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAE  198 (226)
Q Consensus       130 ~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~  198 (226)
                      .+........+++++|||+++.+..............+.+.+..|.+.+++.++++|+++|..+.....
T Consensus        75 ~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~~~~  143 (165)
T cd01120          75 SKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGDKGD  143 (165)
T ss_pred             HHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCccccC
Confidence            122233334589999999999876542110011223456778888888888999999999999865543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]

Probab=99.44  E-value=1.7e-12  Score=109.43  Aligned_cols=127  Identities=17%  Similarity=0.209  Sum_probs=95.6

Q ss_pred             hCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC----CCCeEEEEeccccC----------------chHH--
Q 036464           67 LGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG----LGGKAIYIGKCLGF----------------YTEQ--  124 (226)
Q Consensus        67 l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~----~~~~vlyi~~e~~~----------------~~~~--  124 (226)
                      +.+=+..|-...|+|++|+|||+++++++...+.+.++-+    ..++|+|++.|.+.                .+..  
T Consensus        82 Id~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v~a~mgLsPadvr  161 (402)
T COG3598          82 IDEFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPVRARMGLSPADVR  161 (402)
T ss_pred             hhHHhhcCeeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHHHHHcCCChHhhh
Confidence            3344678888999999999999999999999987776644    35899999988410                0000  


Q ss_pred             ------------------HHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEE
Q 036464          125 ------------------SAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALL  186 (226)
Q Consensus       125 ------------------~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi  186 (226)
                                        ..+.++.+..+++. .|++||||++-+++..+  +.  ...++..+.+.++++|..++|+||
T Consensus       162 n~dltd~~Gaa~~~d~l~pkl~rRfek~~~Q~-rp~~vViDp~v~f~~G~--s~--s~vqv~~fi~~~rkla~~l~caIi  236 (402)
T COG3598         162 NMDLTDVSGAADESDVLSPKLYRRFEKILEQK-RPDFVVIDPFVAFYEGK--SI--SDVQVKEFIKKTRKLARNLECAII  236 (402)
T ss_pred             heeccccccCCCccccccHHHHHHHHHHHHHh-CCCeEEEcchhhhcCCc--cc--hhHHHHHHHHHHHHHHHhcCCeEE
Confidence                              02345555555554 79999999999877553  22  235678999999999999999999


Q ss_pred             EeccccccCCCC
Q 036464          187 EPNLATTANLAE  198 (226)
Q Consensus       187 ~~nq~~~~~~~~  198 (226)
                      +++|.++....+
T Consensus       237 y~hHtskss~~~  248 (402)
T COG3598         237 YIHHTSKSSGKN  248 (402)
T ss_pred             EEeccccccCCC
Confidence            999999865544

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=99.40  E-value=3.7e-12  Score=101.27  Aligned_cols=103  Identities=24%  Similarity=0.296  Sum_probs=68.9

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH------------------------------
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS------------------------------  125 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~------------------------------  125 (226)
                      +++|.|+||+|||+|+++++...+      ..+.+|+|++.|.  ..+++                              
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~------~~g~~v~~~s~e~--~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~   72 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGL------ARGEPGLYVTLEE--SPEELIENAESLGWDLERLEDEGLLAIVDADPDEI   72 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHH------HCCCcEEEEECCC--CHHHHHHHHHHcCCChHHHHhcCCeEEEecCcccc
Confidence            478999999999999999999987      5789999999763  11100                              


Q ss_pred             ---------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          126 ---------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       126 ---------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                               ..+..+...+... +++++||||+++++..   +......   .+.+.++.+ ++.|+++|+++|....
T Consensus        73 s~~~~~~~~~~~~~i~~~~~~~-~~~~lviD~~~~~~~~---~~~~~~~---~i~~l~~~l-~~~g~tvi~v~~~~~~  142 (187)
T cd01124          73 GPAESSLRLELIQRLKDAIEEF-KAKRVVIDSVSGLLLM---EQSTARL---EIRRLLFAL-KRFGVTTLLTSEQSGL  142 (187)
T ss_pred             chhhhhhhHHHHHHHHHHHHHh-CCCEEEEeCcHHHhhc---ChHHHHH---HHHHHHHHH-HHCCCEEEEEeccccC
Confidence                     1123344444443 7899999999987653   1111122   222333333 3569999999998764

A related protein is found in archaea.

>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]

Probab=99.18  E-value=4.2e-11  Score=102.09  Aligned_cols=150  Identities=20%  Similarity=0.188  Sum_probs=105.6

Q ss_pred             cCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC---------------ch
Q 036464           58 TSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF---------------YT  122 (226)
Q Consensus        58 Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~---------------~~  122 (226)
                      .-++.|+++| +|.++|++++++||.|+|||||+...+...+      .+|-+.+|-+.|+.+               ..
T Consensus       258 kRFpvLNk~L-kGhR~GElTvlTGpTGsGKTTFlsEYsLDL~------~QGVnTLwgSFEi~n~rla~~mL~Qyagyrl~  330 (514)
T KOG2373|consen  258 KRFPVLNKYL-KGHRPGELTVLTGPTGSGKTTFLSEYSLDLF------TQGVNTLWGSFEIPNKRLAHWMLVQYAGYRLL  330 (514)
T ss_pred             hhhhHHHHHh-ccCCCCceEEEecCCCCCceeEehHhhHHHH------hhhhhheeeeeecchHHHHHHHHHHHccCchH
Confidence            3578999999 5899999999999999999999999999987      578899999988611               11


Q ss_pred             HHH---------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHH
Q 036464          123 EQS---------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLM  175 (226)
Q Consensus       123 ~~~---------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~  175 (226)
                      +++                           ..++.++..+- -.++..||||.++.++....- ..+|-.....++..++
T Consensus       331 drl~~y~HWadrFErlplyfmtfhgqq~~~~vi~~i~ha~y-V~di~HViIDNLQFmmg~~~~-~~Drf~~QD~iig~fR  408 (514)
T KOG2373|consen  331 DRLNSYKHWADRFERLPLYFMTFHGQQFMEKVINEIAHAIY-VEDIQHVIIDNLQFMMGQGMM-ALDRFHLQDRIIGYFR  408 (514)
T ss_pred             hhhhhhhHHHHHHhccchHhhhhcccchHHHHHHHHHHHHH-HHhhhhhhhhhHHHHhccchh-ccchhhhHHHHHHHHH
Confidence            111                           01222222221 136899999999977654321 2346666778899999


Q ss_pred             HHHHHcCCEEEEeccccccCCCCCCcCCcCCCCchhHHHHHh
Q 036464          176 NLAKKFSLALLEPNLATTANLAESCLTCLRDSGSRKAVAAAA  217 (226)
Q Consensus       176 ~la~~~~~~vi~~nq~~~~~~~~~~~~~~~~sg~~~~~~~~~  217 (226)
                      ++|.++||-|-++-|.+|.-++. .+.-.-.-||++.-..||
T Consensus       409 ~fAT~nn~HvTlVvHPRKed~d~-El~t~s~fGsAkatQEAD  449 (514)
T KOG2373|consen  409 QFATQNNIHVTLVVHPRKEDGDT-ELDTQSFFGSAKATQEAD  449 (514)
T ss_pred             HHhhccceeEEEEecccccCCCc-eeeehhhccccccccccc
Confidence            99999999999999999864432 222233345555555554

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.03  E-value=3.5e-09  Score=88.22  Aligned_cols=43  Identities=12%  Similarity=0.132  Sum_probs=34.8

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA  191 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~  191 (226)
                      +++++++|++++.++-         ....++++.+++++++.|.|||++-|=
T Consensus       156 ~~~iLLLDEPTs~LDi---------~~Q~evl~ll~~l~~~~~~tvv~vlHD  198 (258)
T COG1120         156 ETPILLLDEPTSHLDI---------AHQIEVLELLRDLNREKGLTVVMVLHD  198 (258)
T ss_pred             CCCEEEeCCCccccCH---------HHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence            6899999999987733         123378899999999999999988764

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.95  E-value=8.1e-09  Score=76.62  Aligned_cols=107  Identities=24%  Similarity=0.199  Sum_probs=66.2

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc-----------------hHHHHHHHHHHHHHh
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY-----------------TEQSAVINYLDKFVS  136 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~-----------------~~~~~~l~~l~~~l~  136 (226)
                      +..+.|+||||+|||+++..++.....      ....++|++.+....                 .........+.+.++
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGP------PGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALAR   75 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCC------CCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHH
Confidence            678999999999999999999998862      224799999763211                 112223344555555


Q ss_pred             hCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464          137 EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA  191 (226)
Q Consensus       137 ~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~  191 (226)
                      .. .+.+|+||++..+.........    ................+..+|++++.
T Consensus        76 ~~-~~~viiiDei~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~  125 (148)
T smart00382       76 KL-KPDVLILDEITSLLDAEQEALL----LLLEELRLLLLLKSEKNLTVILTTND  125 (148)
T ss_pred             hc-CCCEEEEECCcccCCHHHHHHH----HhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence            44 4799999999976543211000    00000223344555677888877775

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.92  E-value=1.1e-08  Score=82.40  Aligned_cols=44  Identities=14%  Similarity=0.170  Sum_probs=34.4

Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      .+|+++.+|++++.++++         .+.+++..++.+|+ .|.|.+++.|-.
T Consensus       153 M~P~vmLFDEPTSALDPE---------lv~EVL~vm~~LA~-eGmTMivVTHEM  196 (240)
T COG1126         153 MDPKVMLFDEPTSALDPE---------LVGEVLDVMKDLAE-EGMTMIIVTHEM  196 (240)
T ss_pred             CCCCEEeecCCcccCCHH---------HHHHHHHHHHHHHH-cCCeEEEEechh
Confidence            379999999999877653         45688899999986 567777777754

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.91  E-value=4.2e-08  Score=73.02  Aligned_cols=111  Identities=21%  Similarity=0.154  Sum_probs=70.5

Q ss_pred             EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc---CchHHHHHHHHHHHHHhhCCCceEEEEcCCchhh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG---FYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHF  153 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~---~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~  153 (226)
                      ++|+||||+|||+++..++...-         .++++++....   ...+....+..+-+......++.+++||++..+.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~---------~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~   71 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG---------FPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLF   71 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT---------SEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTS
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc---------cccccccccccccccccccccccccccccccccccceeeeeccchhcc
Confidence            57999999999999999998863         56888885421   1122223333333334444247999999999887


Q ss_pred             hcCc-CChHHHHHHHHHHHHHHHHHHHH-cCCEEEEeccccccCC
Q 036464          154 RHGF-VDLALRTRVLSGIALKLMNLAKK-FSLALLEPNLATTANL  196 (226)
Q Consensus       154 ~~~~-~~~~~r~~~l~~~~~~L~~la~~-~~~~vi~~nq~~~~~~  196 (226)
                      .... .........+..++..+.+.... .++.||.+++....++
T Consensus        72 ~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~  116 (132)
T PF00004_consen   72 PKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKID  116 (132)
T ss_dssp             HHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSC
T ss_pred             cccccccccccccccceeeecccccccccccceeEEeeCChhhCC
Confidence            6651 12233444556666666666554 4578887776654443

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.90  E-value=9e-09  Score=87.37  Aligned_cols=125  Identities=18%  Similarity=0.166  Sum_probs=89.0

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEE--Eeccc------cCchHHH-HHHHHHHHHHhhCCCc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY--IGKCL------GFYTEQS-AVINYLDKFVSEHKDV  141 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vly--i~~e~------~~~~~~~-~~l~~l~~~l~~~~~~  141 (226)
                      |.-.+++++.||||+|||+||..+|.+..+-.  .+.-.+...  |+...      .++.... .+.+.++++++.....
T Consensus       174 It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~--~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~l  251 (423)
T KOG0744|consen  174 ITWNRLILLHGPPGTGKTSLCKALAQKLSIRT--NDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNL  251 (423)
T ss_pred             eeeeeEEEEeCCCCCChhHHHHHHHHhheeee--cCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcE
Confidence            55678999999999999999999999987421  111222222  22210      0111112 3568889999887677


Q ss_pred             eEEEEcCCchhhhcC-----cCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464          142 KVVIIDSIAFHFRHG-----FVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA  197 (226)
Q Consensus       142 ~lvVIDsl~~l~~~~-----~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~  197 (226)
                      -.|.||++.++-...     ..+..+..+.++.++..|.++-+..|+.++.|+..+..++.
T Consensus       252 VfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~  312 (423)
T KOG0744|consen  252 VFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDV  312 (423)
T ss_pred             EEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHH
Confidence            899999998765332     12455567789999999999999999999999999987764

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.90  E-value=9.7e-09  Score=84.07  Aligned_cols=49  Identities=20%  Similarity=0.136  Sum_probs=38.7

Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL  196 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~  196 (226)
                      .+|+++|.|+.++.++..         ...++++.|..+.++++.+.|+++|=...+.
T Consensus       158 ~~PklLIlDEptSaLD~s---------iQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~  206 (252)
T COG1124         158 PEPKLLILDEPTSALDVS---------VQAQILNLLLELKKERGLTYLFISHDLALVE  206 (252)
T ss_pred             cCCCEEEecCchhhhcHH---------HHHHHHHHHHHHHHhcCceEEEEeCcHHHHH
Confidence            479999999999877442         1237888899999999999999999664433

>PRK04296 thymidine kinase; Provisional

Probab=98.88  E-value=2.3e-08  Score=80.27  Aligned_cols=97  Identities=18%  Similarity=0.242  Sum_probs=64.4

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec--cccC------------ch-----HHHHHHHHHHHH
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK--CLGF------------YT-----EQSAVINYLDKF  134 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~--e~~~------------~~-----~~~~~l~~l~~~  134 (226)
                      |.+++++|++|+|||+++++++....      +.+.+|+++..  +...            ..     .....+..+.+ 
T Consensus         2 g~i~litG~~GsGKTT~~l~~~~~~~------~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-   74 (190)
T PRK04296          2 AKLEFIYGAMNSGKSTELLQRAYNYE------ERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-   74 (190)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHHH------HcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-
Confidence            78999999999999999999999886      46788888843  2100            00     00112223333 


Q ss_pred             HhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          135 VSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       135 l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                        ...++++||||+++.+- .         .   + +..|.+.++..|++|+++.....
T Consensus        75 --~~~~~dvviIDEaq~l~-~---------~---~-v~~l~~~l~~~g~~vi~tgl~~~  117 (190)
T PRK04296         75 --EGEKIDCVLIDEAQFLD-K---------E---Q-VVQLAEVLDDLGIPVICYGLDTD  117 (190)
T ss_pred             --hCCCCCEEEEEccccCC-H---------H---H-HHHHHHHHHHcCCeEEEEecCcc
Confidence              23478999999997431 1         0   1 23455566789999999987654

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.87  E-value=1.4e-08  Score=83.09  Aligned_cols=44  Identities=11%  Similarity=0.104  Sum_probs=34.8

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      +|++|+-|+++.-++.+         .-..++..|+.+++++|.|||++.|=.
T Consensus       160 ~P~iilADEPTgnLD~~---------t~~~V~~ll~~~~~~~g~tii~VTHd~  203 (226)
T COG1136         160 NPKIILADEPTGNLDSK---------TAKEVLELLRELNKERGKTIIMVTHDP  203 (226)
T ss_pred             CCCeEEeeCccccCChH---------HHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence            79999999999755331         123678889999999999999998864

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.85  E-value=1.5e-08  Score=84.12  Aligned_cols=110  Identities=16%  Similarity=0.128  Sum_probs=67.9

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccc-----c------CCCCCeEEEEeccc---c----------------
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVE-----F------GGLGGKAIYIGKCL---G----------------  119 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~-----~------~~~~~~vlyi~~e~---~----------------  119 (226)
                      -+++|+++.|.||+|+|||||...++.-.. |..     +      .....++-|+.-..   +                
T Consensus        26 ~v~~G~~~~iiGPNGaGKSTLlK~iLGll~-p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~  104 (254)
T COG1121          26 SVEKGEITALIGPNGAGKSTLLKAILGLLK-PSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYG  104 (254)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCc-CCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcc
Confidence            489999999999999999999987765332 211     0      01124677776311   0                


Q ss_pred             -----Cc---h--HHH-HHH-----------------------HHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHH
Q 036464          120 -----FY---T--EQS-AVI-----------------------NYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTR  165 (226)
Q Consensus       120 -----~~---~--~~~-~~l-----------------------~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~  165 (226)
                           ..   .  +.. +.+                       -.+.+.+.  .+++++++|++.+-.+.     ..   
T Consensus       105 ~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~--~~p~lllLDEP~~gvD~-----~~---  174 (254)
T COG1121         105 KKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALA--QNPDLLLLDEPFTGVDV-----AG---  174 (254)
T ss_pred             cccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhc--cCCCEEEecCCcccCCH-----HH---
Confidence                 00   0  000 011                       01222232  37999999999865532     12   


Q ss_pred             HHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          166 VLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       166 ~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                       ...+.+.|+++.++ |++|++++|=-
T Consensus       175 -~~~i~~lL~~l~~e-g~tIl~vtHDL  199 (254)
T COG1121         175 -QKEIYDLLKELRQE-GKTVLMVTHDL  199 (254)
T ss_pred             -HHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence             22667788888888 99999998854

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=98.84  E-value=2.3e-08  Score=78.77  Aligned_cols=108  Identities=18%  Similarity=0.208  Sum_probs=63.3

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH------------------HHHHHHHHHHhh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS------------------AVINYLDKFVSE  137 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~------------------~~l~~l~~~l~~  137 (226)
                      ++.|.|++|||||++|.+++..         .+.+++|+.+... +...+                  +....+.+.+.+
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~---------~~~~~~y~at~~~-~d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~   70 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAE---------LGGPVTYIATAEA-FDDEMAERIARHRKRRPAHWRTIETPRDLVSALKE   70 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHh---------cCCCeEEEEccCc-CCHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHh
Confidence            4789999999999999999865         2468999987631 11111                  122355566655


Q ss_pred             CCCceEEEEcCCchhhhcCcCChHH-HHHHHHHHHHHHHHHHHHcCCE-EEEeccccc
Q 036464          138 HKDVKVVIIDSIAFHFRHGFVDLAL-RTRVLSGIALKLMNLAKKFSLA-LLEPNLATT  193 (226)
Q Consensus       138 ~~~~~lvVIDsl~~l~~~~~~~~~~-r~~~l~~~~~~L~~la~~~~~~-vi~~nq~~~  193 (226)
                      .++.++|+||+++............ ....+.+.+..|.+..++.+++ |+++|.+-.
T Consensus        71 ~~~~~~VLIDclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~~viVsnEvG~  128 (169)
T cd00544          71 LDPGDVVLIDCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGTLILVSNEVGL  128 (169)
T ss_pred             cCCCCEEEEEcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcCCCcEEEEECCcCC
Confidence            4467899999999776554322000 0011223333344433446655 555555543

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.83  E-value=2.5e-08  Score=79.18  Aligned_cols=110  Identities=16%  Similarity=0.104  Sum_probs=65.1

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC---CCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEE
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG---LGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVII  146 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~---~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVI  146 (226)
                      -+++|+++.|.|++|+|||||+.-++.... | +.|.   .+..+.|+..+...+..+...+. +...+..  +++++++
T Consensus        21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-p-~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~-laral~~--~p~lllL   95 (177)
T cd03222          21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLI-P-NGDNDEWDGITPVYKPQYIDLSGGELQRVA-IAAALLR--NATFYLF   95 (177)
T ss_pred             EECCCCEEEEECCCCChHHHHHHHHHcCCC-C-CCcEEEECCEEEEEEcccCCCCHHHHHHHH-HHHHHhc--CCCEEEE
Confidence            379999999999999999999987776542 2 1110   01122222211111222222222 3333332  5799999


Q ss_pred             cCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          147 DSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       147 Dsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      |++++.++.     ..+    ..+...+++++++.+.+||++.|-..
T Consensus        96 DEPts~LD~-----~~~----~~l~~~l~~~~~~~~~tiiivsH~~~  133 (177)
T cd03222          96 DEPSAYLDI-----EQR----LNAARAIRRLSEEGKKTALVVEHDLA  133 (177)
T ss_pred             ECCcccCCH-----HHH----HHHHHHHHHHHHcCCCEEEEEECCHH
Confidence            999976532     112    25566677776665588888888754

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK08181 transposase; Validated

Probab=98.81  E-value=1.2e-08  Score=86.05  Aligned_cols=73  Identities=16%  Similarity=0.269  Sum_probs=52.5

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHH---HHHHHHHhhCCCceEEEEcC
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVI---NYLDKFVSEHKDVKVVIIDS  148 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l---~~l~~~l~~~~~~~lvVIDs  148 (226)
                      ..+.-+.|+||||+|||+|+..++..++      ..+.+|+|++..  ...+.+...   ....+.++...+++++|||+
T Consensus       104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~------~~g~~v~f~~~~--~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDD  175 (269)
T PRK08181        104 AKGANLLLFGPPGGGKSHLAAAIGLALI------ENGWRVLFTRTT--DLVQKLQVARRELQLESAIAKLDKFDLLILDD  175 (269)
T ss_pred             hcCceEEEEecCCCcHHHHHHHHHHHHH------HcCCceeeeeHH--HHHHHHHHHHhCCcHHHHHHHHhcCCEEEEec
Confidence            4667799999999999999999998887      467899999853  222222111   12334555555789999999


Q ss_pred             Cchh
Q 036464          149 IAFH  152 (226)
Q Consensus       149 l~~l  152 (226)
                      +...
T Consensus       176 lg~~  179 (269)
T PRK08181        176 LAYV  179 (269)
T ss_pred             cccc
Confidence            9853

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.81  E-value=2.9e-08  Score=77.68  Aligned_cols=103  Identities=15%  Similarity=0.143  Sum_probs=64.0

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-cC-----------------chHHHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-GF-----------------YTEQSAVINYLD  132 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-~~-----------------~~~~~~~l~~l~  132 (226)
                      +++|+++.|.|++|+|||||+.-++....       ...+-++++.+. ..                 +..+...+ .+.
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~-------~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl-~la   94 (163)
T cd03216          23 VRRGEVHALLGENGAGKSTLMKILSGLYK-------PDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMV-EIA   94 (163)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhCCCC-------CCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHH-HHH
Confidence            88999999999999999999988776542       222334454321 00                 01111111 223


Q ss_pred             HHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          133 KFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       133 ~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +.+..  +++++++|++++.++.     ..+    ..+...|+++++ .+.++|++.|-..
T Consensus        95 ral~~--~p~illlDEP~~~LD~-----~~~----~~l~~~l~~~~~-~~~tiii~sh~~~  143 (163)
T cd03216          95 RALAR--NARLLILDEPTAALTP-----AEV----ERLFKVIRRLRA-QGVAVIFISHRLD  143 (163)
T ss_pred             HHHhc--CCCEEEEECCCcCCCH-----HHH----HHHHHHHHHHHH-CCCEEEEEeCCHH
Confidence            33332  6899999999976532     112    255566666654 4888888887754

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=98.81  E-value=6e-08  Score=82.27  Aligned_cols=106  Identities=12%  Similarity=0.027  Sum_probs=74.9

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc------------------cCc-hHHHHHHHHHHHHHh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL------------------GFY-TEQSAVINYLDKFVS  136 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~------------------~~~-~~~~~~l~~l~~~l~  136 (226)
                      ..+|+|+++.|||+++.+++....-..+......+|+|+..-.                  +.. .........+..+++
T Consensus        63 ~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr  142 (302)
T PF05621_consen   63 NLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLR  142 (302)
T ss_pred             ceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHH
Confidence            3899999999999999999987642222222335899998431                  000 011122344556777


Q ss_pred             hCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEec
Q 036464          137 EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN  189 (226)
Q Consensus       137 ~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~n  189 (226)
                      .. +++++|||+++.++..       +.....++++.||.++++.++++|++.
T Consensus       143 ~~-~vrmLIIDE~H~lLaG-------s~~~qr~~Ln~LK~L~NeL~ipiV~vG  187 (302)
T PF05621_consen  143 RL-GVRMLIIDEFHNLLAG-------SYRKQREFLNALKFLGNELQIPIVGVG  187 (302)
T ss_pred             Hc-CCcEEEeechHHHhcc-------cHHHHHHHHHHHHHHhhccCCCeEEec
Confidence            65 8999999999987654       233456889999999999999999875

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.80  E-value=4e-08  Score=77.98  Aligned_cols=107  Identities=17%  Similarity=0.124  Sum_probs=65.6

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-C-chH----HHH----HH-----------
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-F-YTE----QSA----VI-----------  128 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-~-~~~----~~~----~l-----------  128 (226)
                      -+.+|+++.|.|++|+|||||+.-++....       ...+-++++.+.. . ...    .+.    .+           
T Consensus        21 ~i~~G~~~~l~G~nGsGKStLl~~i~G~~~-------~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~   93 (180)
T cd03214          21 SIEAGEIVGILGPNGAGKSTLLKTLAGLLK-------PSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADR   93 (180)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCCC-------CCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcC
Confidence            378999999999999999999988776542       2233445553210 0 000    000    00           


Q ss_pred             ------------HHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          129 ------------NYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       129 ------------~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                                  -.+...+.  .+++++++|++++-++..     .    ...+.+.|+++.++++.++|++.|-...
T Consensus        94 ~~~~LS~G~~qrl~laral~--~~p~llllDEP~~~LD~~-----~----~~~~~~~l~~~~~~~~~tiii~sh~~~~  160 (180)
T cd03214          94 PFNELSGGERQRVLLARALA--QEPPILLLDEPTSHLDIA-----H----QIELLELLRRLARERGKTVVMVLHDLNL  160 (180)
T ss_pred             CcccCCHHHHHHHHHHHHHh--cCCCEEEEeCCccCCCHH-----H----HHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence                        01111121  268999999999766331     1    2256667777776668898888887543

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK12377 putative replication protein; Provisional

Probab=98.80  E-value=3.1e-08  Score=82.59  Aligned_cols=70  Identities=20%  Similarity=0.273  Sum_probs=50.3

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHH----HHHHHHHhhCCCceEEEEcCCc
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVI----NYLDKFVSEHKDVKVVIIDSIA  150 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l----~~l~~~l~~~~~~~lvVIDsl~  150 (226)
                      .-+.|+|+||+|||+|+..++..+.      ..+..|+|++..  +....+...    ....+.++...++++||||++.
T Consensus       102 ~~l~l~G~~GtGKThLa~AIa~~l~------~~g~~v~~i~~~--~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg  173 (248)
T PRK12377        102 TNFVFSGKPGTGKNHLAAAIGNRLL------AKGRSVIVVTVP--DVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIG  173 (248)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH------HcCCCeEEEEHH--HHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCC
Confidence            4688999999999999999999887      467889999853  222222110    1233455555689999999998


Q ss_pred             hh
Q 036464          151 FH  152 (226)
Q Consensus       151 ~l  152 (226)
                      ..
T Consensus       174 ~~  175 (248)
T PRK12377        174 IQ  175 (248)
T ss_pred             CC
Confidence            53

>PF13479 AAA_24: AAA domain

Probab=98.78  E-value=5.4e-08  Score=79.45  Aligned_cols=109  Identities=22%  Similarity=0.225  Sum_probs=65.9

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC--c-----------hHHHHHHHHHHHHHhhCCC
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF--Y-----------TEQSAVINYLDKFVSEHKD  140 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~--~-----------~~~~~~l~~l~~~l~~~~~  140 (226)
                      +-.+.|+|+||+|||+++..+              .+++||++|.-.  .           ..--.+.+.+..+.....+
T Consensus         3 ~~~~lIyG~~G~GKTt~a~~~--------------~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~   68 (213)
T PF13479_consen    3 PIKILIYGPPGSGKTTLAASL--------------PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEAD   68 (213)
T ss_pred             ceEEEEECCCCCCHHHHHHhC--------------CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCC
Confidence            456899999999999999765              367888877410  0           0000122223333334458


Q ss_pred             ceEEEEcCCchhhhcC---cC-----------C--hHHHHHHHHHHHH-HHHHHHHHcCCEEEEeccccccCC
Q 036464          141 VKVVIIDSIAFHFRHG---FV-----------D--LALRTRVLSGIAL-KLMNLAKKFSLALLEPNLATTANL  196 (226)
Q Consensus       141 ~~lvVIDsl~~l~~~~---~~-----------~--~~~r~~~l~~~~~-~L~~la~~~~~~vi~~nq~~~~~~  196 (226)
                      ++.|||||++.+.+.-   ..           .  ....+..+...+. .++++.+..+..||+|.|....-+
T Consensus        69 y~tiVIDsis~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~i~~l~~~~~~~VI~tah~~~~~~  141 (213)
T PF13479_consen   69 YDTIVIDSISWLEDMCLEYICRQNKKKIKRSGDPDYGKGYGELQQEFMRFIDKLLNALGKNVIFTAHAKEEED  141 (213)
T ss_pred             CCEEEEECHHHHHHHHHHHHhhhhcccccccCCCcccchHHHHHHHHHHHHHHHHHHCCCcEEEEEEEEEEEc
Confidence            9999999999754310   00           0  0112333333333 333456679999999999987655

>PF13173 AAA_14: AAA domain

Probab=98.78  E-value=7.7e-08  Score=72.15  Aligned_cols=98  Identities=21%  Similarity=0.172  Sum_probs=66.0

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhC--CCceEEEEcCCch
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEH--KDVKVVIIDSIAF  151 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~--~~~~lvVIDsl~~  151 (226)
                      +.++.|.||.|+|||+++.+++....       ...+++|++.+...... ....+ +.+.+.+.  ++..+|+||+++.
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~-------~~~~~~yi~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~i~iDEiq~   72 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLL-------PPENILYINFDDPRDRR-LADPD-LLEYFLELIKPGKKYIFIDEIQY   72 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc-------ccccceeeccCCHHHHH-Hhhhh-hHHHHHHhhccCCcEEEEehhhh
Confidence            56899999999999999999998874       45789999976211111 11111 22332221  2578999999985


Q ss_pred             hhhcCcCChHHHHHHHHHHHHHHHHHHHHc-CCEEEEeccccccC
Q 036464          152 HFRHGFVDLALRTRVLSGIALKLMNLAKKF-SLALLEPNLATTAN  195 (226)
Q Consensus       152 l~~~~~~~~~~r~~~l~~~~~~L~~la~~~-~~~vi~~nq~~~~~  195 (226)
                      +-               .+...++.+.++. ++.+++|.......
T Consensus        73 ~~---------------~~~~~lk~l~d~~~~~~ii~tgS~~~~l  102 (128)
T PF13173_consen   73 LP---------------DWEDALKFLVDNGPNIKIILTGSSSSLL  102 (128)
T ss_pred             hc---------------cHHHHHHHHHHhccCceEEEEccchHHH
Confidence            41               3445667777666 78999888766544

>PRK06526 transposase; Provisional

Probab=98.77  E-value=1.5e-08  Score=84.81  Aligned_cols=74  Identities=20%  Similarity=0.346  Sum_probs=51.8

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHH---HHHHHHHHhhCCCceEEEEc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV---INYLDKFVSEHKDVKVVIID  147 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~---l~~l~~~l~~~~~~~lvVID  147 (226)
                      +..+.-+.|+||||+|||+++..++..++      ..+.+|+|++..  ...+.+..   ...+.+.+.+..++++||||
T Consensus        95 i~~~~nlll~Gp~GtGKThLa~al~~~a~------~~g~~v~f~t~~--~l~~~l~~~~~~~~~~~~l~~l~~~dlLIID  166 (254)
T PRK06526         95 VTGKENVVFLGPPGTGKTHLAIGLGIRAC------QAGHRVLFATAA--QWVARLAAAHHAGRLQAELVKLGRYPLLIVD  166 (254)
T ss_pred             hhcCceEEEEeCCCCchHHHHHHHHHHHH------HCCCchhhhhHH--HHHHHHHHHHhcCcHHHHHHHhccCCEEEEc
Confidence            44566799999999999999999998887      467889888643  22222211   11334445555578999999


Q ss_pred             CCchh
Q 036464          148 SIAFH  152 (226)
Q Consensus       148 sl~~l  152 (226)
                      ++...
T Consensus       167 D~g~~  171 (254)
T PRK06526        167 EVGYI  171 (254)
T ss_pred             ccccC
Confidence            99843

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=1.8e-08  Score=90.49  Aligned_cols=117  Identities=17%  Similarity=0.156  Sum_probs=78.4

Q ss_pred             hCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH-----HHHHHHHHHHhhCCCc
Q 036464           67 LGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS-----AVINYLDKFVSEHKDV  141 (226)
Q Consensus        67 l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~-----~~l~~l~~~l~~~~~~  141 (226)
                      |||-+|+|  ++++||||+|||.||..+|..+-.         +-.|.++.  ++.|.+     .-+.++-+..+.. .|
T Consensus       332 LGGKLPKG--VLLvGPPGTGKTlLARAvAGEA~V---------PFF~~sGS--EFdEm~VGvGArRVRdLF~aAk~~-AP  397 (752)
T KOG0734|consen  332 LGGKLPKG--VLLVGPPGTGKTLLARAVAGEAGV---------PFFYASGS--EFDEMFVGVGARRVRDLFAAAKAR-AP  397 (752)
T ss_pred             ccCcCCCc--eEEeCCCCCchhHHHHHhhcccCC---------CeEecccc--chhhhhhcccHHHHHHHHHHHHhc-CC
Confidence            57889999  899999999999999988876542         23333333  555543     2234444444443 78


Q ss_pred             eEEEEcCCchhhhcCcC-ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464          142 KVVIIDSIAFHFRHGFV-DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA  197 (226)
Q Consensus       142 ~lvVIDsl~~l~~~~~~-~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~  197 (226)
                      .+|+||+|.++=..... +.....+-+++++-.+.-+.+.-|+.||-........+.
T Consensus       398 cIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~  454 (752)
T KOG0734|consen  398 CIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDK  454 (752)
T ss_pred             eEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhH
Confidence            99999999975433222 222344567788888888877778888876666555554

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=98.76  E-value=1.1e-07  Score=81.23  Aligned_cols=50  Identities=20%  Similarity=0.141  Sum_probs=39.0

Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA  197 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~  197 (226)
                      .+|+++|+|++++-+++     ..+    ..+.+.|++++++.+.+|++++|.......
T Consensus       153 ~~P~lliLDEPt~GLDp-----~~~----~~~~~~l~~l~~~g~~tvlissH~l~e~~~  202 (293)
T COG1131         153 HDPELLILDEPTSGLDP-----ESR----REIWELLRELAKEGGVTILLSTHILEEAEE  202 (293)
T ss_pred             cCCCEEEECCCCcCCCH-----HHH----HHHHHHHHHHHhCCCcEEEEeCCcHHHHHH
Confidence            37899999999976643     223    367788899998888999999999865543

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=98.75  E-value=1.3e-07  Score=74.63  Aligned_cols=103  Identities=13%  Similarity=0.195  Sum_probs=60.1

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH-HH-----------------HHHHHHHHh
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS-AV-----------------INYLDKFVS  136 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~-~~-----------------l~~l~~~l~  136 (226)
                      .++.|.|+||||||++|.+++...         +.+++|+++.. .+.+.+ +-                 -..+.+.++
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~~~---------~~~~~~iat~~-~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~   71 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAAQS---------GLQVLYIATAQ-PFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLR   71 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHHHc---------CCCcEeCcCCC-CChHHHHHHHHHHHhcCCCCCeEecccccHHHHHH
Confidence            478999999999999999998764         24688998642 122211 00                 013455555


Q ss_pred             h-CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEec
Q 036464          137 E-HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN  189 (226)
Q Consensus       137 ~-~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~n  189 (226)
                      . .++.++|+||+++.+.........  .......+..+.+..++.+.++|+|+
T Consensus        72 ~~~~~~~~VlID~Lt~~~~n~l~~~~--~~~~~~~l~~li~~L~~~~~tvVlVs  123 (170)
T PRK05800         72 ADAAPGRCVLVDCLTTWVTNLLFEEG--EEAIAAEIDALLAALQQLPAKIILVT  123 (170)
T ss_pred             hhcCCCCEEEehhHHHHHHHHhcccc--hHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            4 345789999999987654322110  01122233334444345666555554

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.75  E-value=4.8e-08  Score=72.92  Aligned_cols=105  Identities=19%  Similarity=0.189  Sum_probs=68.7

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC------------------c-hHHHHHHHHHH
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF------------------Y-TEQSAVINYLD  132 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~------------------~-~~~~~~l~~l~  132 (226)
                      +.+.++.|+|++|+|||+++.+++.....-.. .....+++|++.....                  . .......+.+.
T Consensus         2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~   80 (131)
T PF13401_consen    2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAE-IKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLI   80 (131)
T ss_dssp             -----EEEEE-TTSSHHHHHHHHHHHHHHHHH-HCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHH
T ss_pred             CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhh-ccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHH
Confidence            35678999999999999999999998751000 0015688898843211                  1 11223456677


Q ss_pred             HHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464          133 KFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA  191 (226)
Q Consensus       133 ~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~  191 (226)
                      +.+.+. +..+||||+++.+. .            ..++..|+.+.++.++.+|++.+.
T Consensus        81 ~~l~~~-~~~~lviDe~~~l~-~------------~~~l~~l~~l~~~~~~~vvl~G~~  125 (131)
T PF13401_consen   81 DALDRR-RVVLLVIDEADHLF-S------------DEFLEFLRSLLNESNIKVVLVGTP  125 (131)
T ss_dssp             HHHHHC-TEEEEEEETTHHHH-T------------HHHHHHHHHHTCSCBEEEEEEESS
T ss_pred             HHHHhc-CCeEEEEeChHhcC-C------------HHHHHHHHHHHhCCCCeEEEEECh
Confidence            777765 55899999999753 1            256778888888999999998765

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.73  E-value=1.9e-07  Score=75.93  Aligned_cols=45  Identities=11%  Similarity=0.217  Sum_probs=33.6

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++-++.     ..+    ..+.+.|++++++.+.+||+++|-..
T Consensus       148 ~p~~lllDEPt~~LD~-----~~~----~~l~~~l~~~~~~~~~tii~~sH~~~  192 (213)
T cd03259         148 EPSLLLLDEPLSALDA-----KLR----EELREELKELQRELGITTIYVTHDQE  192 (213)
T ss_pred             CCCEEEEcCCcccCCH-----HHH----HHHHHHHHHHHHHcCCEEEEEecCHH
Confidence            7899999999976633     122    25667777777777899999988754

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.73  E-value=2.3e-07  Score=73.19  Aligned_cols=109  Identities=16%  Similarity=0.152  Sum_probs=62.7

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC---------------CCCeEEEEeccccCchHHH---------H
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG---------------LGGKAIYIGKCLGFYTEQS---------A  126 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~---------------~~~~vlyi~~e~~~~~~~~---------~  126 (226)
                      +++|+++.|.|++|+|||||+..++.... | ..|.               ....+.|+..+...+....         .
T Consensus        25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~-~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~lLS~G~~  102 (173)
T cd03246          25 IEPGESLAIIGPSGSGKSTLARLILGLLR-P-TSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENILSGGQR  102 (173)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHhccC-C-CCCeEEECCEEcccCCHHHHHhheEEECCCCccccCcHHHHCcCHHHH
Confidence            78999999999999999999998876542 2 1110               0012233322111010000         0


Q ss_pred             HHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          127 VINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       127 ~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      ..-.+...+.  .+++++++|++++.++.     ..+    ..+.+.|+++++ .+.++|++.|-..
T Consensus       103 qrv~la~al~--~~p~~lllDEPt~~LD~-----~~~----~~l~~~l~~~~~-~~~tii~~sh~~~  157 (173)
T cd03246         103 QRLGLARALY--GNPRILVLDEPNSHLDV-----EGE----RALNQAIAALKA-AGATRIVIAHRPE  157 (173)
T ss_pred             HHHHHHHHHh--cCCCEEEEECCccccCH-----HHH----HHHHHHHHHHHh-CCCEEEEEeCCHH
Confidence            0111222222  36899999999976643     122    255566666654 5888888887654

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.73  E-value=8.2e-08  Score=78.03  Aligned_cols=45  Identities=13%  Similarity=0.169  Sum_probs=34.0

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++.++.     ..    ...+.+.|++++++.+.+||++.|-..
T Consensus       148 ~p~llllDEPt~~LD~-----~~----~~~l~~~l~~~~~~~~~tvi~~sH~~~  192 (213)
T cd03301         148 EPKVFLMDEPLSNLDA-----KL----RVQMRAELKRLQQRLGTTTIYVTHDQV  192 (213)
T ss_pred             CCCEEEEcCCcccCCH-----HH----HHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            6899999999976633     11    236677788888778899999988754

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=98.72  E-value=1.6e-08  Score=80.30  Aligned_cols=71  Identities=21%  Similarity=0.337  Sum_probs=45.8

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHH---HHHHHHHHhhCCCceEEEEcCC
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV---INYLDKFVSEHKDVKVVIIDSI  149 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~---l~~l~~~l~~~~~~~lvVIDsl  149 (226)
                      .+.-+.|.|++|+|||+|+..++..++      ..+.+|+|++..  +..+.+..   -....+.+....+++++|||++
T Consensus        46 ~~~~l~l~G~~G~GKThLa~ai~~~~~------~~g~~v~f~~~~--~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDl  117 (178)
T PF01695_consen   46 NGENLILYGPPGTGKTHLAVAIANEAI------RKGYSVLFITAS--DLLDELKQSRSDGSYEELLKRLKRVDLLILDDL  117 (178)
T ss_dssp             C--EEEEEESTTSSHHHHHHHHHHHHH------HTT--EEEEEHH--HHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETC
T ss_pred             cCeEEEEEhhHhHHHHHHHHHHHHHhc------cCCcceeEeecC--ceeccccccccccchhhhcCccccccEeccccc
Confidence            456699999999999999999999887      578899999853  11111110   0011223333336899999999


Q ss_pred             ch
Q 036464          150 AF  151 (226)
Q Consensus       150 ~~  151 (226)
                      ..
T Consensus       118 G~  119 (178)
T PF01695_consen  118 GY  119 (178)
T ss_dssp             TS
T ss_pred             ce
Confidence            84

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK08727 hypothetical protein; Validated

Probab=98.72  E-value=7.9e-08  Score=79.56  Aligned_cols=94  Identities=17%  Similarity=0.210  Sum_probs=61.5

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhh
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFR  154 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~  154 (226)
                      ..+.|+|++|+|||+|+..++....      ..+.+++|++.+  .      ....+.+.++...++++||||++..+..
T Consensus        42 ~~l~l~G~~G~GKThL~~a~~~~~~------~~~~~~~y~~~~--~------~~~~~~~~~~~l~~~dlLiIDDi~~l~~  107 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALALCAAAE------QAGRSSAYLPLQ--A------AAGRLRDALEALEGRSLVALDGLESIAG  107 (233)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH------HcCCcEEEEeHH--H------hhhhHHHHHHHHhcCCEEEEeCcccccC
Confidence            4599999999999999999988876      467799999853  1      1123334444445689999999985432


Q ss_pred             cCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464          155 HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA  191 (226)
Q Consensus       155 ~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~  191 (226)
                      .   .  ..+   ..+. .+.+..++.+..||+|.+.
T Consensus       108 ~---~--~~~---~~lf-~l~n~~~~~~~~vI~ts~~  135 (233)
T PRK08727        108 Q---R--EDE---VALF-DFHNRARAAGITLLYTARQ  135 (233)
T ss_pred             C---h--HHH---HHHH-HHHHHHHHcCCeEEEECCC
Confidence            1   1  111   1233 3444445667777777664

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.71  E-value=2e-07  Score=79.15  Aligned_cols=46  Identities=7%  Similarity=0.138  Sum_probs=34.7

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      +++++++|++++.++.     ..    ...++..|++++++.|.+||++.|-...
T Consensus       158 ~p~lLlLDEPt~~LD~-----~~----~~~l~~~l~~l~~~~g~tilivtH~~~~  203 (279)
T PRK13650        158 RPKIIILDEATSMLDP-----EG----RLELIKTIKGIRDDYQMTVISITHDLDE  203 (279)
T ss_pred             CCCEEEEECCcccCCH-----HH----HHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            7899999999976633     12    2367778888888889999988877543

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.71  E-value=9.9e-08  Score=78.02  Aligned_cols=45  Identities=13%  Similarity=0.162  Sum_probs=33.2

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++-++.     ..+    ..+.+.|+++.++.+.+||+++|-..
T Consensus       149 ~p~lllLDEPt~~LD~-----~~~----~~~~~~l~~~~~~~~~tiii~sH~~~  193 (220)
T cd03293         149 DPDVLLLDEPFSALDA-----LTR----EQLQEELLDIWRETGKTVLLVTHDID  193 (220)
T ss_pred             CCCEEEECCCCCCCCH-----HHH----HHHHHHHHHHHHHcCCEEEEEecCHH
Confidence            6899999999976633     122    25666777777777889888888764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.71  E-value=2.6e-07  Score=72.86  Aligned_cols=109  Identities=19%  Similarity=0.177  Sum_probs=65.0

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC--------------CCCeEEEEeccccCc-----hHHHH-----
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG--------------LGGKAIYIGKCLGFY-----TEQSA-----  126 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~--------------~~~~vlyi~~e~~~~-----~~~~~-----  126 (226)
                      +++|+++.|.|++|+|||||+.-++.... | ..|.              ....+.|+..+...+     .+.+.     
T Consensus        23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~  100 (173)
T cd03230          23 VEKGEIYGLLGPNGAGKTTLIKIILGLLK-P-DSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGM  100 (173)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC-C-CCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHH
Confidence            78999999999999999999988776542 2 1110              012344444321111     11110     


Q ss_pred             -HHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          127 -VINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       127 -~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                       ..-.+...+.  .+++++++|++++.++.     ..+    ..+.+.|++++++ +.++|++.|-..
T Consensus       101 ~qrv~laral~--~~p~illlDEPt~~LD~-----~~~----~~l~~~l~~~~~~-g~tiii~th~~~  156 (173)
T cd03230         101 KQRLALAQALL--HDPELLILDEPTSGLDP-----ESR----REFWELLRELKKE-GKTILLSSHILE  156 (173)
T ss_pred             HHHHHHHHHHH--cCCCEEEEeCCccCCCH-----HHH----HHHHHHHHHHHHC-CCEEEEECCCHH
Confidence             0112222333  36899999999976632     122    2566777777765 888888887654

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.70  E-value=2.1e-07  Score=73.80  Aligned_cols=111  Identities=13%  Similarity=0.065  Sum_probs=63.4

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhcccc-ccCCC-----CCeEEEEeccc----cC-------------chHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPV-EFGGL-----GGKAIYIGKCL----GF-------------YTEQSAV  127 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~-~~~~~-----~~~vlyi~~e~----~~-------------~~~~~~~  127 (226)
                      +++|+++.|.||+|+|||||+..+... . +. .+.+.     ..++.|++...    ..             +..+...
T Consensus        18 i~~G~~~~l~G~nG~GKSTLl~~il~~-~-G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qr   95 (176)
T cd03238          18 IPLNVLVVVTGVSGSGKSTLVNEGLYA-S-GKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQR   95 (176)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhhc-C-CcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHH
Confidence            789999999999999999999766421 0 00 00000     12355654210    00             0001111


Q ss_pred             HHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          128 INYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       128 l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      + .+...+...+.++++++|++++-++..     .    ...+.+.|+++++ .+.+||++.|-...
T Consensus        96 l-~laral~~~~~p~llLlDEPt~~LD~~-----~----~~~l~~~l~~~~~-~g~tvIivSH~~~~  151 (176)
T cd03238          96 V-KLASELFSEPPGTLFILDEPSTGLHQQ-----D----INQLLEVIKGLID-LGNTVILIEHNLDV  151 (176)
T ss_pred             H-HHHHHHhhCCCCCEEEEeCCcccCCHH-----H----HHHHHHHHHHHHh-CCCEEEEEeCCHHH
Confidence            1 223333332348999999999765331     1    2255566666654 78999998887653

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.70  E-value=1.3e-07  Score=74.96  Aligned_cols=110  Identities=16%  Similarity=0.172  Sum_probs=64.9

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC-----------------CCCeEEEEeccccCc-----hHHH---
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG-----------------LGGKAIYIGKCLGFY-----TEQS---  125 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~-----------------~~~~vlyi~~e~~~~-----~~~~---  125 (226)
                      +++|+++.|.|++|+|||||+..++....  +..|.                 ....+.|+..+...+     .+.+   
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~  100 (178)
T cd03229          23 IEAGEIVALLGPSGSGKSTLLRCIAGLEE--PDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG  100 (178)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec
Confidence            78999999999999999999988875432  11110                 001233333221000     1110   


Q ss_pred             -----HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          126 -----AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       126 -----~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                           ...-.+...+.  .+++++++|++++-++.     ..+    ..+.+.|++++++++.++|+++|-..
T Consensus       101 lS~G~~qr~~la~al~--~~p~llilDEP~~~LD~-----~~~----~~l~~~l~~~~~~~~~tiii~sH~~~  162 (178)
T cd03229         101 LSGGQQQRVALARALA--MDPDVLLLDEPTSALDP-----ITR----REVRALLKSLQAQLGITVVLVTHDLD  162 (178)
T ss_pred             CCHHHHHHHHHHHHHH--CCCCEEEEeCCcccCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence                 00111222222  26899999999976533     122    25666777777776889999888654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK07952 DNA replication protein DnaC; Validated

Probab=98.69  E-value=9.2e-08  Score=79.60  Aligned_cols=70  Identities=17%  Similarity=0.259  Sum_probs=49.1

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHH-----HHHHHHHHhhCCCceEEEEcCC
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV-----INYLDKFVSEHKDVKVVIIDSI  149 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~-----l~~l~~~l~~~~~~~lvVIDsl  149 (226)
                      ..+.|+|+||+|||+|+..++..+.      ..+.+|+|++..  +....+..     -....+++....++++||||++
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l~------~~g~~v~~it~~--~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDi  171 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNELL------LRGKSVLIITVA--DIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEI  171 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH------hcCCeEEEEEHH--HHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCC
Confidence            3689999999999999999999886      467899999843  22211110     0122344444457899999999


Q ss_pred             chh
Q 036464          150 AFH  152 (226)
Q Consensus       150 ~~l  152 (226)
                      ...
T Consensus       172 g~~  174 (244)
T PRK07952        172 GVQ  174 (244)
T ss_pred             CCC
Confidence            864

>PRK09183 transposase/IS protein; Provisional

Probab=98.69  E-value=1.1e-07  Score=80.05  Aligned_cols=73  Identities=23%  Similarity=0.264  Sum_probs=50.5

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHH---HHHHHHHhh-CCCceEEEE
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVI---NYLDKFVSE-HKDVKVVII  146 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l---~~l~~~l~~-~~~~~lvVI  146 (226)
                      ++.|..+.|+||||+|||+|+..++....      ..+.+|.|++..  .....+...   ..+...+.+ ...++++||
T Consensus        99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~------~~G~~v~~~~~~--~l~~~l~~a~~~~~~~~~~~~~~~~~dlLii  170 (259)
T PRK09183         99 IERNENIVLLGPSGVGKTHLAIALGYEAV------RAGIKVRFTTAA--DLLLQLSTAQRQGRYKTTLQRGVMAPRLLII  170 (259)
T ss_pred             hhcCCeEEEEeCCCCCHHHHHHHHHHHHH------HcCCeEEEEeHH--HHHHHHHHHHHCCcHHHHHHHHhcCCCEEEE
Confidence            67889999999999999999999987765      467899999843  222121110   112233322 346799999


Q ss_pred             cCCch
Q 036464          147 DSIAF  151 (226)
Q Consensus       147 Dsl~~  151 (226)
                      |++..
T Consensus       171 Ddlg~  175 (259)
T PRK09183        171 DEIGY  175 (259)
T ss_pred             ccccc
Confidence            99974

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.69  E-value=1.3e-07  Score=76.87  Aligned_cols=46  Identities=15%  Similarity=0.202  Sum_probs=34.3

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      +++++++|++++-++..     .+    ..+.+.|++++++++.++|+++|-...
T Consensus       146 ~p~llllDEP~~~LD~~-----~~----~~l~~~l~~~~~~~~~tii~~sH~~~~  191 (211)
T cd03298         146 DKPVLLLDEPFAALDPA-----LR----AEMLDLVLDLHAETKMTVLMVTHQPED  191 (211)
T ss_pred             CCCEEEEcCCcccCCHH-----HH----HHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            78999999999766431     22    256677777877789999999887653

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=98.69  E-value=1.2e-07  Score=77.44  Aligned_cols=46  Identities=13%  Similarity=0.112  Sum_probs=33.7

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      +++++++|++++-++..     .+    ..+.+.|++++++.+.+||+++|-...
T Consensus       158 ~p~lllLDEP~~~LD~~-----~~----~~l~~~l~~~~~~~~~tii~~sH~~~~  203 (218)
T cd03255         158 DPKIILADEPTGNLDSE-----TG----KEVMELLRELNKEAGTTIVVVTHDPEL  203 (218)
T ss_pred             CCCEEEEcCCcccCCHH-----HH----HHHHHHHHHHHHhcCCeEEEEECCHHH
Confidence            78999999999766331     22    256677777777678999999887543

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK06921 hypothetical protein; Provisional

Probab=98.68  E-value=1.3e-07  Score=79.73  Aligned_cols=69  Identities=23%  Similarity=0.263  Sum_probs=49.5

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCC-CCeEEEEeccccCchHHH-HHHHHHHHHHhhCCCceEEEEcCCc
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL-GGKAIYIGKCLGFYTEQS-AVINYLDKFVSEHKDVKVVIIDSIA  150 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~-~~~vlyi~~e~~~~~~~~-~~l~~l~~~l~~~~~~~lvVIDsl~  150 (226)
                      +.-+.|+|+||+|||+|+..++..+.      .. +..|+|++..  .....+ .......+.+....++++||||++.
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~l~------~~~g~~v~y~~~~--~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~  187 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANELM------RKKGVPVLYFPFV--EGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLF  187 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHh------hhcCceEEEEEHH--HHHHHHHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence            56789999999999999999999876      34 7899999853  111221 1123334445555578999999995

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.68  E-value=1.3e-07  Score=77.91  Aligned_cols=46  Identities=13%  Similarity=0.182  Sum_probs=34.1

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      +++++++|++++-++.     ..    ...+.+.|+.++++.+.+||++.|-...
T Consensus       158 ~p~lllLDEP~~~LD~-----~~----~~~l~~~l~~~~~~~~~tvii~sH~~~~  203 (233)
T cd03258         158 NPKVLLCDEATSALDP-----ET----TQSILALLRDINRELGLTIVLITHEMEV  203 (233)
T ss_pred             CCCEEEecCCCCcCCH-----HH----HHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            7899999999976533     11    2256677778877778999999887654

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.68  E-value=2.2e-07  Score=72.85  Aligned_cols=39  Identities=28%  Similarity=0.201  Sum_probs=32.6

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      +.||++..|+|++|+|||||+..++..+.      -..+.|.|..
T Consensus        29 l~PGeVLgiVGESGSGKtTLL~~is~rl~------p~~G~v~Y~~   67 (258)
T COG4107          29 LYPGEVLGIVGESGSGKTTLLKCISGRLT------PDAGTVTYRM   67 (258)
T ss_pred             ecCCcEEEEEecCCCcHHhHHHHHhcccC------CCCCeEEEEc
Confidence            68999999999999999999998887765      2445677766

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.68  E-value=3e-07  Score=70.45  Aligned_cols=101  Identities=11%  Similarity=0.107  Sum_probs=59.5

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc------cCchHHHHHHHHHHHHHhhCCCceE
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL------GFYTEQSAVINYLDKFVSEHKDVKV  143 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~------~~~~~~~~~l~~l~~~l~~~~~~~l  143 (226)
                      -+++|+++.|.|++|+|||||+..++....       ...+-++++...      ..+..+...+.-...++.   ++++
T Consensus        22 ~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~-------~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~---~p~i   91 (144)
T cd03221          22 TINPGDRIGLVGRNGAGKSTLLKLIAGELE-------PDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLE---NPNL   91 (144)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHcCCCC-------CCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhc---CCCE
Confidence            378999999999999999999988776542       112223333210      022233223333333332   6799


Q ss_pred             EEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          144 VIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       144 vVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++|++.+-++.     ..+.    .+.+.|+++    +.+++++.|-..
T Consensus        92 lllDEP~~~LD~-----~~~~----~l~~~l~~~----~~til~~th~~~  128 (144)
T cd03221          92 LLLDEPTNHLDL-----ESIE----ALEEALKEY----PGTVILVSHDRY  128 (144)
T ss_pred             EEEeCCccCCCH-----HHHH----HHHHHHHHc----CCEEEEEECCHH
Confidence            999999976532     1121    333344333    568888877643

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.67  E-value=1.7e-07  Score=76.49  Aligned_cols=44  Identities=7%  Similarity=0.059  Sum_probs=36.1

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      ++++|.=|++.+-+++..         -.++|..|++++++.|+|||+.-|..
T Consensus       165 ~pkiILADEPvasLDp~~---------a~~Vm~~l~~in~~~g~Tvi~nLH~v  208 (258)
T COG3638         165 QPKIILADEPVASLDPES---------AKKVMDILKDINQEDGITVIVNLHQV  208 (258)
T ss_pred             CCCEEecCCcccccChhh---------HHHHHHHHHHHHHHcCCEEEEEechH
Confidence            689999999997664421         23788999999999999999988875

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.67  E-value=3e-07  Score=78.08  Aligned_cols=45  Identities=11%  Similarity=0.148  Sum_probs=34.0

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++-++.     ..+    ..+.+.|++++++++.+||++.|-..
T Consensus       158 ~p~lllLDEPt~gLD~-----~~~----~~l~~~l~~l~~~~~~tilivsH~~~  202 (279)
T PRK13635        158 QPDIIILDEATSMLDP-----RGR----REVLETVRQLKEQKGITVLSITHDLD  202 (279)
T ss_pred             CCCEEEEeCCcccCCH-----HHH----HHHHHHHHHHHHcCCCEEEEEecCHH
Confidence            7899999999976633     122    36677788888888999998887754

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.67  E-value=1.5e-07  Score=77.85  Aligned_cols=48  Identities=13%  Similarity=0.114  Sum_probs=34.7

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL  196 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~  196 (226)
                      +++++++|++++-++.     ..    ...+.+.|++++++.+.++|++.|-.....
T Consensus       150 ~p~llllDEP~~~LD~-----~~----~~~l~~~l~~~~~~~~~tiii~sH~~~~~~  197 (236)
T TIGR03864       150 RPALLLLDEPTVGLDP-----AS----RAAIVAHVRALCRDQGLSVLWATHLVDEIE  197 (236)
T ss_pred             CCCEEEEcCCccCCCH-----HH----HHHHHHHHHHHHHhCCCEEEEEecChhhHh
Confidence            6899999999976533     12    225667777887767889998888765443

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.67  E-value=1.6e-07  Score=76.84  Aligned_cols=45  Identities=11%  Similarity=0.144  Sum_probs=33.2

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++-++..     .    ...+.+.|++++++++.+||++.|-..
T Consensus       149 ~p~llllDEPt~~LD~~-----~----~~~l~~~l~~~~~~~~~tvi~~tH~~~  193 (220)
T cd03265         149 RPEVLFLDEPTIGLDPQ-----T----RAHVWEYIEKLKEEFGMTILLTTHYME  193 (220)
T ss_pred             CCCEEEEcCCccCCCHH-----H----HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            78999999999766331     1    225666777777777889998888654

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=98.67  E-value=5.5e-07  Score=72.80  Aligned_cols=114  Identities=16%  Similarity=0.048  Sum_probs=63.7

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhcc-------ccccCCCCCeEEEEeccccCch-----HHHHHHHHHHHHHhhC
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQI-------PVEFGGLGGKAIYIGKCLGFYT-----EQSAVINYLDKFVSEH  138 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~l-------p~~~~~~~~~vlyi~~e~~~~~-----~~~~~l~~l~~~l~~~  138 (226)
                      +..|+++.|+||+|+|||||+..++..+.+       |..........+|......+..     ........+.++++..
T Consensus        22 l~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e~~~~~~iL~~~  101 (199)
T cd03283          22 MEKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAELRRLKEIVEKA  101 (199)
T ss_pred             EcCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHHHHHHHHHHHhc
Confidence            455799999999999999999999866532       1000000011222221110000     0011224566666665


Q ss_pred             C--CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          139 K--DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       139 ~--~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      .  +++++++|++.+-...     ..+......+   ++.+. +.+.++|++.|-..
T Consensus       102 ~~~~p~llllDEp~~glD~-----~~~~~l~~~l---l~~l~-~~~~tiiivTH~~~  149 (199)
T cd03283         102 KKGEPVLFLLDEIFKGTNS-----RERQAASAAV---LKFLK-NKNTIGIISTHDLE  149 (199)
T ss_pred             cCCCCeEEEEecccCCCCH-----HHHHHHHHHH---HHHHH-HCCCEEEEEcCcHH
Confidence            4  7899999999864422     2232222222   44444 45888988888754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.67  E-value=1.3e-07  Score=80.05  Aligned_cols=47  Identities=11%  Similarity=0.155  Sum_probs=39.0

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN  195 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~  195 (226)
                      +|++++-|+.++.+++.         -...++..|+++-+++|+|+++++|....+
T Consensus       159 ~P~iLL~DEaTSALDP~---------TT~sIL~LL~~In~~lglTIvlITHEm~Vv  205 (339)
T COG1135         159 NPKILLCDEATSALDPE---------TTQSILELLKDINRELGLTIVLITHEMEVV  205 (339)
T ss_pred             CCCEEEecCccccCChH---------HHHHHHHHHHHHHHHcCCEEEEEechHHHH
Confidence            69999999999877553         233788999999999999999999987533

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=98.67  E-value=4e-07  Score=75.96  Aligned_cols=114  Identities=18%  Similarity=0.188  Sum_probs=68.6

Q ss_pred             CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC---CCCeEEEEecccc-----CchHHHH--------------
Q 036464           69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG---LGGKAIYIGKCLG-----FYTEQSA--------------  126 (226)
Q Consensus        69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~---~~~~vlyi~~e~~-----~~~~~~~--------------  126 (226)
                      |-+.+|+++.|.|++|+|||||+..++.... | ..|.   .+.++.|+.....     ...+.+.              
T Consensus        20 ~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~-p-~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~   97 (246)
T cd03237          20 GSISESEVIGILGPNGIGKTTFIKMLAGVLK-P-DEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTHPYFKT   97 (246)
T ss_pred             CCcCCCCEEEEECCCCCCHHHHHHHHhCCCc-C-CCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhccccHHHHH
Confidence            5588999999999999999999987766432 2 2221   1225566553210     0000000              


Q ss_pred             -HHHH--HHHHHhh-------------------CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCE
Q 036464          127 -VINY--LDKFVSE-------------------HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLA  184 (226)
Q Consensus       127 -~l~~--l~~~l~~-------------------~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~  184 (226)
                       .++.  +...+..                   ..+++++++|++++.++.     ..+    ..+.+.|++++++.+.+
T Consensus        98 ~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~-----~~~----~~l~~~l~~~~~~~~~t  168 (246)
T cd03237          98 EIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDV-----EQR----LMASKVIRRFAENNEKT  168 (246)
T ss_pred             HHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH-----HHH----HHHHHHHHHHHHhcCCE
Confidence             0000  0000100                   237899999999976633     122    25667788888888899


Q ss_pred             EEEeccccc
Q 036464          185 LLEPNLATT  193 (226)
Q Consensus       185 vi~~nq~~~  193 (226)
                      ||++.|-..
T Consensus       169 iiivsHd~~  177 (246)
T cd03237         169 AFVVEHDII  177 (246)
T ss_pred             EEEEeCCHH
Confidence            998888754

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK06835 DNA replication protein DnaC; Validated

Probab=98.66  E-value=1.2e-07  Score=82.29  Aligned_cols=70  Identities=24%  Similarity=0.206  Sum_probs=49.4

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHH-----HHHHHHHhhCCCceEEEEcCC
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVI-----NYLDKFVSEHKDVKVVIIDSI  149 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l-----~~l~~~l~~~~~~~lvVIDsl  149 (226)
                      .-+.|+|++|+|||+|+..+|..+.      ..+..|+|++..  .....+...     ......+....+++++|||++
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l~------~~g~~V~y~t~~--~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDl  255 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKELL------DRGKSVIYRTAD--ELIEILREIRFNNDKELEEVYDLLINCDLLIIDDL  255 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHH------HCCCeEEEEEHH--HHHHHHHHHHhccchhHHHHHHHhccCCEEEEecc
Confidence            5689999999999999999999887      568899999854  222222110     111222444457899999999


Q ss_pred             chh
Q 036464          150 AFH  152 (226)
Q Consensus       150 ~~l  152 (226)
                      ...
T Consensus       256 G~e  258 (329)
T PRK06835        256 GTE  258 (329)
T ss_pred             CCC
Confidence            864

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.66  E-value=1.6e-07  Score=76.21  Aligned_cols=28  Identities=32%  Similarity=0.186  Sum_probs=25.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+.-++...
T Consensus        24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          24 IKKGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999999998877543

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.66  E-value=3.4e-07  Score=77.30  Aligned_cols=28  Identities=25%  Similarity=0.175  Sum_probs=25.4

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.||+|+|||||+..++...
T Consensus        32 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~   59 (269)
T PRK13648         32 IPKGQWTSIVGHNGSGKSTIAKLMIGIE   59 (269)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999999998887654

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.66  E-value=2.2e-07  Score=74.19  Aligned_cols=40  Identities=25%  Similarity=0.194  Sum_probs=33.1

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK  116 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~  116 (226)
                      -+|+|.++.|.||+|+|||||.--+++-.       ..+.+.++|++
T Consensus        23 ~i~~g~iTs~IGPNGAGKSTLLS~~sRL~-------~~d~G~i~i~g   62 (252)
T COG4604          23 DIPKGGITSIIGPNGAGKSTLLSMMSRLL-------KKDSGEITIDG   62 (252)
T ss_pred             eecCCceeEEECCCCccHHHHHHHHHHhc-------cccCceEEEee
Confidence            48999999999999999999997666655       35667788884

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.65  E-value=2.7e-07  Score=75.59  Aligned_cols=40  Identities=23%  Similarity=0.169  Sum_probs=31.5

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK  116 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~  116 (226)
                      -+++|+++.|.|++|+|||+|+..+.....       +..+-++|++
T Consensus        30 ~V~~Gei~~iiGgSGsGKStlLr~I~Gll~-------P~~GeI~i~G   69 (263)
T COG1127          30 DVPRGEILAILGGSGSGKSTLLRLILGLLR-------PDKGEILIDG   69 (263)
T ss_pred             eecCCcEEEEECCCCcCHHHHHHHHhccCC-------CCCCeEEEcC
Confidence            389999999999999999999988876653       3444455553

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.65  E-value=1.8e-07  Score=76.80  Aligned_cols=46  Identities=15%  Similarity=0.078  Sum_probs=34.2

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      +++++++|++++.++.     ..    ...+...|++++++++.+||++.|-...
T Consensus       164 ~p~llllDEPt~~LD~-----~~----~~~l~~~l~~~~~~~~~tii~~sH~~~~  209 (228)
T PRK10584        164 RPDVLFADEPTGNLDR-----QT----GDKIADLLFSLNREHGTTLILVTHDLQL  209 (228)
T ss_pred             CCCEEEEeCCCCCCCH-----HH----HHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            7899999999976633     11    2256677888877888999988887653

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=98.65  E-value=1.6e-07  Score=82.07  Aligned_cols=45  Identities=16%  Similarity=0.197  Sum_probs=34.8

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +|+++++|++++.++..     .    ...++..|+++.++.+++||++.|-..
T Consensus       158 ~P~iLLlDEPts~LD~~-----t----~~~i~~lL~~l~~~~g~tiiliTH~~~  202 (343)
T TIGR02314       158 NPKVLLCDEATSALDPA-----T----TQSILELLKEINRRLGLTILLITHEMD  202 (343)
T ss_pred             CCCEEEEeCCcccCCHH-----H----HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            68999999999766431     1    236777888888888999999888654

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.65  E-value=7.9e-08  Score=83.55  Aligned_cols=105  Identities=19%  Similarity=0.149  Sum_probs=69.7

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc--------------------c---C------
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL--------------------G---F------  120 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~--------------------~---~------  120 (226)
                      -+++|+++.|.||+||||||++..+|--..       ...+-++++++.                    +   +      
T Consensus        27 ~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~-------p~~G~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVa   99 (352)
T COG3842          27 DIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ-------PSSGEILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVA   99 (352)
T ss_pred             eecCCcEEEEECCCCCCHHHHHHHHhCCCC-------CCCceEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhh
Confidence            489999999999999999999998886653       445556666442                    0   0      


Q ss_pred             ---------chHHH-HHH---------------------------HHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHH
Q 036464          121 ---------YTEQS-AVI---------------------------NYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALR  163 (226)
Q Consensus       121 ---------~~~~~-~~l---------------------------~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r  163 (226)
                               ..+.+ +.+                           -.+.+.+.  .+|+++.+|++-+.++.     .-|
T Consensus       100 fGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~--~~P~vLLLDEPlSaLD~-----kLR  172 (352)
T COG3842         100 FGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALV--PEPKVLLLDEPLSALDA-----KLR  172 (352)
T ss_pred             hhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhh--cCcchhhhcCcccchhH-----HHH
Confidence                     00100 000                           01112222  37999999999865532     223


Q ss_pred             HHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          164 TRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       164 ~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      .    ++...|+++.++.|+|+|++.|=.
T Consensus       173 ~----~mr~Elk~lq~~~giT~i~VTHDq  197 (352)
T COG3842         173 E----QMRKELKELQRELGITFVYVTHDQ  197 (352)
T ss_pred             H----HHHHHHHHHHHhcCCeEEEEECCH
Confidence            2    566789999999999999888854

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.65  E-value=1.7e-07  Score=78.18  Aligned_cols=106  Identities=16%  Similarity=0.140  Sum_probs=71.2

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-cC--chHH---H-HHH--------------
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-GF--YTEQ---S-AVI--------------  128 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-~~--~~~~---~-~~l--------------  128 (226)
                      -+.+|++..|+|++|+||||++..++.-.-       ...+-+|++... ..  ..+.   + +++              
T Consensus        35 ~i~~ge~~glVGESG~GKSTlgr~i~~L~~-------pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryP  107 (268)
T COG4608          35 SIKEGETLGLVGESGCGKSTLGRLILGLEE-------PTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYP  107 (268)
T ss_pred             EEcCCCEEEEEecCCCCHHHHHHHHHcCcC-------CCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCC
Confidence            389999999999999999999987776542       344556666431 00  0001   0 011              


Q ss_pred             --------H--HHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          129 --------N--YLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       129 --------~--~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                              +  .+.+.+.  -+|+++|.|++.+.++..     -+    .++++.|+.+.+++|++.+++.|--.
T Consensus       108 helSGGQrQRi~IARALa--l~P~liV~DEpvSaLDvS-----iq----aqIlnLL~dlq~~~~lt~lFIsHDL~  171 (268)
T COG4608         108 HELSGGQRQRIGIARALA--LNPKLIVADEPVSALDVS-----VQ----AQILNLLKDLQEELGLTYLFISHDLS  171 (268)
T ss_pred             cccCchhhhhHHHHHHHh--hCCcEEEecCchhhcchh-----HH----HHHHHHHHHHHHHhCCeEEEEEEEHH
Confidence                    0  1122222  269999999999877432     22    36788899999999999999998654

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.65  E-value=3.3e-07  Score=80.47  Aligned_cols=45  Identities=16%  Similarity=0.227  Sum_probs=33.6

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++.+-++.     ..|.    .+...|+++.++.++++|+++|-..
T Consensus       152 ~P~llLLDEP~s~LD~-----~~r~----~l~~~l~~l~~~~g~tii~vTHd~~  196 (356)
T PRK11650        152 EPAVFLFDEPLSNLDA-----KLRV----QMRLEIQRLHRRLKTTSLYVTHDQV  196 (356)
T ss_pred             CCCEEEEeCCcccCCH-----HHHH----HHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            7999999999976532     2222    5666778888888999999988643

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=98.65  E-value=4.6e-07  Score=74.73  Aligned_cols=45  Identities=13%  Similarity=0.127  Sum_probs=33.6

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++.++.     ..    ...+.+.|++++++.+.+||++.|-..
T Consensus       132 ~p~lllLDEPt~gLD~-----~~----~~~l~~~l~~~~~~~~~tii~~sH~~~  176 (230)
T TIGR01184       132 RPKVLLLDEPFGALDA-----LT----RGNLQEELMQIWEEHRVTVLMVTHDVD  176 (230)
T ss_pred             CCCEEEEcCCCcCCCH-----HH----HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            7899999999976643     12    225667777888778889988888753

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.64  E-value=3.6e-07  Score=75.65  Aligned_cols=49  Identities=8%  Similarity=0.004  Sum_probs=38.1

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA  197 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~  197 (226)
                      +|+++|+|++++.++.     ..    ..++++.++++..+.+.|+|++.|-......
T Consensus       156 ~P~iliLDEPta~LD~-----~~----~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~  204 (235)
T COG1122         156 GPEILLLDEPTAGLDP-----KG----RRELLELLKKLKEEGGKTIIIVTHDLELVLE  204 (235)
T ss_pred             CCCEEEEcCCCCCCCH-----HH----HHHHHHHHHHHHhcCCCeEEEEeCcHHHHHh
Confidence            7999999999987643     12    3377888899998989999998887765443

>PRK05642 DNA replication initiation factor; Validated

Probab=98.64  E-value=1.6e-07  Score=77.72  Aligned_cols=95  Identities=15%  Similarity=0.177  Sum_probs=60.0

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhh
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFR  154 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~  154 (226)
                      ..+.|+|++|+|||+|+..++..+.      ..+.+|+|++.+  ++.      .....+++...+++++|||.++.+-.
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~------~~~~~v~y~~~~--~~~------~~~~~~~~~~~~~d~LiiDDi~~~~~  111 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFE------QRGEPAVYLPLA--ELL------DRGPELLDNLEQYELVCLDDLDVIAG  111 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH------hCCCcEEEeeHH--HHH------hhhHHHHHhhhhCCEEEEechhhhcC
Confidence            4578999999999999998887765      457899999965  111      11233444334578999999985421


Q ss_pred             cCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          155 HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       155 ~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      .     ...+.   .+.. +-+...+.|..+|++....
T Consensus       112 ~-----~~~~~---~Lf~-l~n~~~~~g~~ilits~~~  140 (234)
T PRK05642        112 K-----ADWEE---ALFH-LFNRLRDSGRRLLLAASKS  140 (234)
T ss_pred             C-----hHHHH---HHHH-HHHHHHhcCCEEEEeCCCC
Confidence            1     11112   2333 3333456677777776643

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.64  E-value=2.2e-07  Score=77.00  Aligned_cols=65  Identities=14%  Similarity=0.157  Sum_probs=45.9

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCchh
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFH  152 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l  152 (226)
                      +....|+||+|+|||+|+..++....      ..+.+|.|++.+..  .   .   ...++++...+.++|+||+++.+
T Consensus        45 ~~~l~l~Gp~G~GKThLl~a~~~~~~------~~~~~v~y~~~~~~--~---~---~~~~~~~~~~~~dlliiDdi~~~  109 (235)
T PRK08084         45 SGYIYLWSREGAGRSHLLHAACAELS------QRGRAVGYVPLDKR--A---W---FVPEVLEGMEQLSLVCIDNIECI  109 (235)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH------hCCCeEEEEEHHHH--h---h---hhHHHHHHhhhCCEEEEeChhhh
Confidence            35789999999999999999988776      35789999986421  1   1   11122222234689999999854

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.64  E-value=1.9e-07  Score=77.12  Aligned_cols=45  Identities=13%  Similarity=0.057  Sum_probs=33.2

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++.++..     .    ...+.+.|++++++.+.+||++.|-..
T Consensus       154 ~p~llllDEPt~~LD~~-----~----~~~l~~~l~~~~~~~~~tvi~vsH~~~  198 (235)
T cd03261         154 DPELLLYDEPTAGLDPI-----A----SGVIDDLIRSLKKELGLTSIMVTHDLD  198 (235)
T ss_pred             CCCEEEecCCcccCCHH-----H----HHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence            78999999999766331     1    225667777777777889988888764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.64  E-value=3.8e-07  Score=78.52  Aligned_cols=29  Identities=24%  Similarity=0.070  Sum_probs=25.7

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.||+|+|||||+..++...
T Consensus        29 ~i~~Gei~gllGpNGaGKSTLl~~l~Gl~   57 (306)
T PRK13537         29 HVQRGECFGLLGPNGAGKTTTLRMLLGLT   57 (306)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            37899999999999999999998887644

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.64  E-value=5e-07  Score=67.53  Aligned_cols=105  Identities=19%  Similarity=0.134  Sum_probs=63.1

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHH-HH----HHHHHHhhCCCceEEEEc
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV-IN----YLDKFVSEHKDVKVVIID  147 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~-l~----~l~~~l~~~~~~~lvVID  147 (226)
                      .+..+.|.|+||+|||+++..++....      ..+..++|++............ ..    ..........+..++++|
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilD   91 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELF------RPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFID   91 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhh------cCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEe
Confidence            466899999999999999999998875      3567899998542111111111 11    111122223467999999


Q ss_pred             CCchhhhcCcCChHHHHHHHHHHHHHHHHHHH----HcCCEEEEeccccc
Q 036464          148 SIAFHFRHGFVDLALRTRVLSGIALKLMNLAK----KFSLALLEPNLATT  193 (226)
Q Consensus       148 sl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~----~~~~~vi~~nq~~~  193 (226)
                      ++..+..          .....+...+..+..    ..++.+|++.+...
T Consensus        92 e~~~~~~----------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          92 EIDSLSR----------GAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             ChhhhhH----------HHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence            9986511          111233344444332    35788887766554

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.64  E-value=2.2e-07  Score=75.93  Aligned_cols=47  Identities=11%  Similarity=0.078  Sum_probs=34.1

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN  195 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~  195 (226)
                      +++++++|++++-++..     .+    ..+.+.|++++++.+.+||++.|-....
T Consensus       159 ~p~illlDEPt~~LD~~-----~~----~~l~~~l~~~~~~~~~tii~~tH~~~~~  205 (221)
T TIGR02211       159 QPSLVLADEPTGNLDNN-----NA----KIIFDLMLELNRELNTSFLVVTHDLELA  205 (221)
T ss_pred             CCCEEEEeCCCCcCCHH-----HH----HHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence            78999999999766331     12    2566677777777788999888876543

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.64  E-value=2.9e-07  Score=82.09  Aligned_cols=118  Identities=15%  Similarity=0.090  Sum_probs=77.5

Q ss_pred             CceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---------------
Q 036464           54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---------------  118 (226)
Q Consensus        54 ~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---------------  118 (226)
                      ++++ |+...|.+- =-+++|++..|.|++|+|||||+.-+.-.+.       +..+-+|+++..               
T Consensus        12 K~f~-~~~And~V~-l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~-------P~~GeI~v~G~~v~~~sP~dA~~~GIG   82 (501)
T COG3845          12 KRFP-GVVANDDVS-LSVKKGEIHALLGENGAGKSTLMKILFGLYQ-------PDSGEIRVDGKEVRIKSPRDAIRLGIG   82 (501)
T ss_pred             EEcC-CEEecCcee-eeecCCcEEEEeccCCCCHHHHHHHHhCccc-------CCcceEEECCEEeccCCHHHHHHcCCc
Confidence            3444 666666542 1489999999999999999999977766553       445556666431               


Q ss_pred             -----------cCchHHH---------------HH-------------------------------HHHHHHHHhhCCCc
Q 036464          119 -----------GFYTEQS---------------AV-------------------------------INYLDKFVSEHKDV  141 (226)
Q Consensus       119 -----------~~~~~~~---------------~~-------------------------------l~~l~~~l~~~~~~  141 (226)
                                 +...|.+               ..                               ++-+..+   ..++
T Consensus        83 MVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaL---yr~a  159 (501)
T COG3845          83 MVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKAL---YRGA  159 (501)
T ss_pred             EEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHH---hcCC
Confidence                       0000100               00                               1111111   2368


Q ss_pred             eEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          142 KVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       142 ~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++|+|++++.+.+         ++..+++..|++++ +.|.+||+++|--+
T Consensus       160 ~iLILDEPTaVLTP---------~E~~~lf~~l~~l~-~~G~tIi~ITHKL~  201 (501)
T COG3845         160 RLLILDEPTAVLTP---------QEADELFEILRRLA-AEGKTIIFITHKLK  201 (501)
T ss_pred             CEEEEcCCcccCCH---------HHHHHHHHHHHHHH-HCCCEEEEEeccHH
Confidence            99999999987754         45668888999886 57999999988754

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.64  E-value=2.2e-07  Score=78.01  Aligned_cols=112  Identities=13%  Similarity=0.033  Sum_probs=65.6

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccC-----C-----CCCeEEEEeccc--cC---chHHHH------HHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG-----G-----LGGKAIYIGKCL--GF---YTEQSA------VIN  129 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~-----~-----~~~~vlyi~~e~--~~---~~~~~~------~l~  129 (226)
                      +.+|+++.|.|++|+|||||+.-++.... | +.|     +     ....+.|+..+.  +.   ..+.+.      ...
T Consensus        35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~-p-~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~  112 (257)
T PRK11247         35 IPAGQFVAVVGRSGCGKSTLLRLLAGLET-P-SAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRD  112 (257)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC-C-CCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHHHHhcccchHHH
Confidence            78999999999999999999988776542 2 111     0     012344544321  00   001110      000


Q ss_pred             HHHHHHhh----------------------------CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHc
Q 036464          130 YLDKFVSE----------------------------HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKF  181 (226)
Q Consensus       130 ~l~~~l~~----------------------------~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~  181 (226)
                      .+.++++.                            ..+++++++|++++-++.     ..+    ..+.+.|++++++.
T Consensus       113 ~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~-----~~~----~~l~~~L~~~~~~~  183 (257)
T PRK11247        113 AALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDA-----LTR----IEMQDLIESLWQQH  183 (257)
T ss_pred             HHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH-----HHH----HHHHHHHHHHHHHc
Confidence            11111110                            126899999999976633     122    25666777777778


Q ss_pred             CCEEEEeccccc
Q 036464          182 SLALLEPNLATT  193 (226)
Q Consensus       182 ~~~vi~~nq~~~  193 (226)
                      +.+||+++|-..
T Consensus       184 ~~tviivsHd~~  195 (257)
T PRK11247        184 GFTVLLVTHDVS  195 (257)
T ss_pred             CCEEEEEeCCHH
Confidence            899998888753

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.63  E-value=5.2e-07  Score=70.36  Aligned_cols=52  Identities=21%  Similarity=0.180  Sum_probs=39.1

Q ss_pred             cCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           58 TSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        58 Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      ++-+-||.+= =-+.+|+.+.|+||+|+|||+|..++|.-..       ...+.+|+.+|
T Consensus        14 ~~a~il~~is-l~v~~Ge~iaitGPSG~GKStllk~va~Lis-------p~~G~l~f~Ge   65 (223)
T COG4619          14 GDAKILNNIS-LSVRAGEFIAITGPSGCGKSTLLKIVASLIS-------PTSGTLLFEGE   65 (223)
T ss_pred             CCCeeeccee-eeecCCceEEEeCCCCccHHHHHHHHHhccC-------CCCceEEEcCc
Confidence            3444455432 1478999999999999999999999987764       45667777765

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=98.63  E-value=4.2e-07  Score=78.05  Aligned_cols=29  Identities=28%  Similarity=0.161  Sum_probs=25.5

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.||+|+|||||+..++...
T Consensus        15 ~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~   43 (302)
T TIGR01188        15 KVREGEVFGFLGPNGAGKTTTIRMLTTLL   43 (302)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999998777643

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.63  E-value=4.5e-07  Score=74.71  Aligned_cols=44  Identities=14%  Similarity=0.092  Sum_probs=32.4

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      +++++.+|++-..++.     ..|.    .+...|.++.++.+.||+++.|=.
T Consensus       148 ~P~lLLlDEPFgALDa-----lTR~----~lq~~l~~lw~~~~~TvllVTHdi  191 (248)
T COG1116         148 RPKLLLLDEPFGALDA-----LTRE----ELQDELLRLWEETRKTVLLVTHDV  191 (248)
T ss_pred             CCCEEEEcCCcchhhH-----HHHH----HHHHHHHHHHHhhCCEEEEEeCCH
Confidence            6899999999765532     2233    455677788889999999888854

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.63  E-value=1.5e-07  Score=85.60  Aligned_cols=46  Identities=17%  Similarity=0.115  Sum_probs=37.6

Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      .+|+++|.|++++.++..         .-.+++..|+++.++.|+++|+++|--.
T Consensus       171 ~~P~LLIaDEPTTaLDvt---------~q~qIL~llk~l~~e~g~a~l~ITHDl~  216 (539)
T COG1123         171 LKPKLLIADEPTTALDVT---------TQAQILDLLKDLQRELGMAVLFITHDLG  216 (539)
T ss_pred             CCCCEEEECCCccccCHH---------HHHHHHHHHHHHHHHcCcEEEEEcCCHH
Confidence            379999999999876432         2237888999999999999999999653

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.63  E-value=3e-07  Score=74.20  Aligned_cols=31  Identities=29%  Similarity=0.174  Sum_probs=27.0

Q ss_pred             CCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ..|+++.++.|.||+|||||||+..+-+..-
T Consensus        28 l~i~~~~VTAlIGPSGcGKST~LR~lNRmnd   58 (253)
T COG1117          28 LDIPKNKVTALIGPSGCGKSTLLRCLNRMND   58 (253)
T ss_pred             eeccCCceEEEECCCCcCHHHHHHHHHhhcc
Confidence            4699999999999999999999987766553

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.63  E-value=4.6e-07  Score=73.80  Aligned_cols=45  Identities=13%  Similarity=0.183  Sum_probs=37.2

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +|+++++|+++.-+.+         ..+.++.+.++++.++.++||+++-|-.+
T Consensus       154 ~PklLLLDEPs~GLaP---------~iv~~I~~~i~~l~~~~g~tIlLVEQn~~  198 (237)
T COG0410         154 RPKLLLLDEPSEGLAP---------KIVEEIFEAIKELRKEGGMTILLVEQNAR  198 (237)
T ss_pred             CCCEEEecCCccCcCH---------HHHHHHHHHHHHHHHcCCcEEEEEeccHH
Confidence            7999999999964432         34668899999999988999999998765

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.63  E-value=2.2e-07  Score=77.88  Aligned_cols=29  Identities=31%  Similarity=0.247  Sum_probs=25.7

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.|++|+|||||+.-++...
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248         23 TLESGELLVVLGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999998887643

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.63  E-value=2.6e-07  Score=71.61  Aligned_cols=103  Identities=16%  Similarity=0.103  Sum_probs=64.4

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-----------------CchHHHHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-----------------FYTEQSAVINYLDK  133 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-----------------~~~~~~~~l~~l~~  133 (226)
                      +++|+++.|.|++|+|||+|+..++...-       ...+-++++.+..                 .+..+...+ .+..
T Consensus        22 i~~g~~~~i~G~nGsGKStll~~l~g~~~-------~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~-~l~~   93 (157)
T cd00267          22 LKAGEIVALVGPNGSGKSTLLRAIAGLLK-------PTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRV-ALAR   93 (157)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC-------CCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHH-HHHH
Confidence            78999999999999999999988876542       2233345554310                 111111112 2333


Q ss_pred             HHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          134 FVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       134 ~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      .+..  +++++++|++++-++.     ..    ...+.+.|+.+... +.+++++.|-..
T Consensus        94 ~l~~--~~~i~ilDEp~~~lD~-----~~----~~~l~~~l~~~~~~-~~tii~~sh~~~  141 (157)
T cd00267          94 ALLL--NPDLLLLDEPTSGLDP-----AS----RERLLELLRELAEE-GRTVIIVTHDPE  141 (157)
T ss_pred             HHhc--CCCEEEEeCCCcCCCH-----HH----HHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence            3332  5899999999976532     11    22455666666554 788888888754

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.63  E-value=6e-07  Score=72.82  Aligned_cols=28  Identities=21%  Similarity=0.145  Sum_probs=25.4

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+|+++.|.|++|+|||||+.-++...
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269          23 VEKGEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999998888653

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.62  E-value=5.2e-07  Score=79.14  Aligned_cols=45  Identities=7%  Similarity=0.178  Sum_probs=34.2

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++.+-++.     ..|    .++...|+++.++.++++|++.|-..
T Consensus       152 ~P~llLLDEP~s~LD~-----~~r----~~l~~~L~~l~~~~~~tvi~vTHd~~  196 (353)
T TIGR03265       152 SPGLLLLDEPLSALDA-----RVR----EHLRTEIRQLQRRLGVTTIMVTHDQE  196 (353)
T ss_pred             CCCEEEEcCCcccCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence            6899999999976532     222    25667788888889999999888764

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.62  E-value=2.6e-07  Score=75.08  Aligned_cols=28  Identities=25%  Similarity=0.232  Sum_probs=25.3

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+|+++.|.|++|+|||||+.-++...
T Consensus        24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292          24 ISAGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999999998887653

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.62  E-value=5.2e-07  Score=74.62  Aligned_cols=41  Identities=22%  Similarity=0.084  Sum_probs=32.7

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      -+++|+++.+.||+||||||++..+-+-+       .+..+-++|+.+
T Consensus        23 ~I~~gef~vliGpSGsGKTTtLkMINrLi-------ept~G~I~i~g~   63 (309)
T COG1125          23 TIEEGEFLVLIGPSGSGKTTTLKMINRLI-------EPTSGEILIDGE   63 (309)
T ss_pred             EecCCeEEEEECCCCCcHHHHHHHHhccc-------CCCCceEEECCe
Confidence            38999999999999999999997766554       345566778755

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=98.61  E-value=4.2e-07  Score=80.84  Aligned_cols=119  Identities=16%  Similarity=0.132  Sum_probs=69.2

Q ss_pred             CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc--Cc-hHHHHHHHHHHHHHhhCCCceEEE
Q 036464           69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--FY-TEQSAVINYLDKFVSEHKDVKVVI  145 (226)
Q Consensus        69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--~~-~~~~~~l~~l~~~l~~~~~~~lvV  145 (226)
                      -|++++.-++|+||||+|||+++..+|....         ...+.+.....  .+ .+....+..+-..... ..+.+|+
T Consensus       174 ~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~---------~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~-~~P~ILf  243 (398)
T PTZ00454        174 IGIDPPRGVLLYGPPGTGKTMLAKAVAHHTT---------ATFIRVVGSEFVQKYLGEGPRMVRDVFRLARE-NAPSIIF  243 (398)
T ss_pred             cCCCCCceEEEECCCCCCHHHHHHHHHHhcC---------CCEEEEehHHHHHHhcchhHHHHHHHHHHHHh-cCCeEEE
Confidence            3688888899999999999999999988753         22333332210  00 1111223333333433 3789999


Q ss_pred             EcCCchhhhcCcCC----hHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464          146 IDSIAFHFRHGFVD----LALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA  197 (226)
Q Consensus       146 IDsl~~l~~~~~~~----~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~  197 (226)
                      ||++.++.......    ...-++.+.+++..+..+....++.||++.+....++.
T Consensus       244 IDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDp  299 (398)
T PTZ00454        244 IDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDP  299 (398)
T ss_pred             EECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCH
Confidence            99999876433221    11222344455555554444567777776665444443

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.61  E-value=6.4e-07  Score=76.18  Aligned_cols=46  Identities=20%  Similarity=0.219  Sum_probs=34.0

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      +++++++|++++-++.     ..+    ..+...|++++++.+.+||++.|-...
T Consensus       161 ~P~llllDEPt~gLD~-----~~~----~~l~~~l~~l~~~~g~tvli~tH~~~~  206 (282)
T PRK13640        161 EPKIIILDESTSMLDP-----AGK----EQILKLIRKLKKKNNLTVISITHDIDE  206 (282)
T ss_pred             CCCEEEEECCcccCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            7899999999976533     122    256677788877789999988877543

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.61  E-value=2.4e-07  Score=75.45  Aligned_cols=29  Identities=21%  Similarity=0.095  Sum_probs=25.7

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.|++|+|||||+..++...
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        25 HITKGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999998887643

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.61  E-value=1.5e-07  Score=80.14  Aligned_cols=44  Identities=20%  Similarity=0.118  Sum_probs=35.6

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      +|++||-|++++.++..         ...++++.|+++.+++|.++|+++|=-
T Consensus       171 ~P~LlIADEPTTALDvt---------~QaqIl~Ll~~l~~e~~~aiilITHDl  214 (316)
T COG0444         171 NPKLLIADEPTTALDVT---------VQAQILDLLKELQREKGTALILITHDL  214 (316)
T ss_pred             CCCEEEeCCCcchhhHH---------HHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            79999999999866431         233788888999999999999998853

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=98.61  E-value=4.4e-07  Score=74.43  Aligned_cols=102  Identities=19%  Similarity=0.223  Sum_probs=63.6

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHH-HH--HHHHHHHhhCCCceEEEEcCCchh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSA-VI--NYLDKFVSEHKDVKVVIIDSIAFH  152 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~-~l--~~l~~~l~~~~~~~lvVIDsl~~l  152 (226)
                      .+.|+|++|+|||+|+..++..+..    ...+.+|+|++.+  .+...+. .+  ..+.++.+.....++++||.++.+
T Consensus        36 ~l~l~G~~G~GKTHLL~Ai~~~~~~----~~~~~~v~y~~~~--~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l  109 (219)
T PF00308_consen   36 PLFLYGPSGLGKTHLLQAIANEAQK----QHPGKRVVYLSAE--EFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFL  109 (219)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHH----HCTTS-EEEEEHH--HHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGG
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHh----ccccccceeecHH--HHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhh
Confidence            4689999999999999999887751    1357799999976  3332221 11  234455555457899999999865


Q ss_pred             hhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          153 FRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       153 ~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      -     .....+   ..++..+.++ .+.|..+|++.+..
T Consensus       110 ~-----~~~~~q---~~lf~l~n~~-~~~~k~li~ts~~~  140 (219)
T PF00308_consen  110 A-----GKQRTQ---EELFHLFNRL-IESGKQLILTSDRP  140 (219)
T ss_dssp             T-----THHHHH---HHHHHHHHHH-HHTTSEEEEEESS-
T ss_pred             c-----CchHHH---HHHHHHHHHH-HhhCCeEEEEeCCC
Confidence            3     111122   2344444444 35677778777554

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.61  E-value=2.4e-07  Score=81.00  Aligned_cols=46  Identities=15%  Similarity=0.195  Sum_probs=34.6

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      +++++++|++++.++.     ..+    ..+.+.|++++++.+.+||++.|-...
T Consensus       158 ~p~iLlLDEPts~LD~-----~~~----~~l~~~L~~l~~~~g~tiilvtH~~~~  203 (343)
T PRK11153        158 NPKVLLCDEATSALDP-----ATT----RSILELLKDINRELGLTIVLITHEMDV  203 (343)
T ss_pred             CCCEEEEeCCcccCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            7899999999976643     122    256677888888889999999887643

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=98.60  E-value=2.9e-07  Score=74.92  Aligned_cols=46  Identities=11%  Similarity=0.024  Sum_probs=33.9

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      +++++++|++++.++..     .    ...+...|+++.++.+.+||+++|-...
T Consensus       146 ~p~llllDEPt~~LD~~-----~----~~~~~~~l~~~~~~~~~tii~vsh~~~~  191 (213)
T TIGR01277       146 PNPILLLDEPFSALDPL-----L----REEMLALVKQLCSERQRTLLMVTHHLSD  191 (213)
T ss_pred             CCCEEEEcCCCccCCHH-----H----HHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            78999999999766331     1    2256677777777778999988887653

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.60  E-value=3.2e-07  Score=76.79  Aligned_cols=113  Identities=13%  Similarity=0.103  Sum_probs=66.4

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC----CCCeEEEEeccc--cCc-----h-----------HHH-HH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG----LGGKAIYIGKCL--GFY-----T-----------EQS-AV  127 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~----~~~~vlyi~~e~--~~~-----~-----------~~~-~~  127 (226)
                      +++|+++.|.|++|+|||||+.-++.... | ..|.    ....+.|+..+.  +..     .           +.+ ..
T Consensus        27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~-p-~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  104 (251)
T PRK09544         27 LKPGKILTLLGPNGAGKSTLVRVVLGLVA-P-DEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTKKEDILPA  104 (251)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC-C-CceEEEECCccCEEEeccccccccccChhHHHHHhccccccHHHHHHH
Confidence            78999999999999999999988776432 2 1110    112455554321  000     0           000 00


Q ss_pred             HHH--HHHHHhh-------------------CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEE
Q 036464          128 INY--LDKFVSE-------------------HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALL  186 (226)
Q Consensus       128 l~~--l~~~l~~-------------------~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi  186 (226)
                      ++.  +...+..                   ..+++++++|++++.++.     ..+    ..+.+.|++++++++.+||
T Consensus       105 l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~-----~~~----~~l~~~L~~~~~~~g~tii  175 (251)
T PRK09544        105 LKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDV-----NGQ----VALYDLIDQLRRELDCAVL  175 (251)
T ss_pred             HHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH-----HHH----HHHHHHHHHHHHhcCCEEE
Confidence            000  0001100                   137899999999976533     112    2566777778777789999


Q ss_pred             Eecccccc
Q 036464          187 EPNLATTA  194 (226)
Q Consensus       187 ~~nq~~~~  194 (226)
                      ++.|-...
T Consensus       176 ivsH~~~~  183 (251)
T PRK09544        176 MVSHDLHL  183 (251)
T ss_pred             EEecCHHH
Confidence            88877653

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=98.60  E-value=2.2e-07  Score=75.15  Aligned_cols=112  Identities=13%  Similarity=0.008  Sum_probs=61.6

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccC---CCCCeEEEEeccc----------cCchHHHHHHHHHHHHHhhCC
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG---GLGGKAIYIGKCL----------GFYTEQSAVINYLDKFVSEHK  139 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~---~~~~~vlyi~~e~----------~~~~~~~~~l~~l~~~l~~~~  139 (226)
                      +|+++.|+||+|+|||||+..++....++....   .....+-|++...          ............+...+....
T Consensus        28 ~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~~~~d~i~~~~s~~~~e~~~l~~i~~~~~  107 (202)
T cd03243          28 SGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRIGAEDSISDGRSTFMAELLELKEILSLAT  107 (202)
T ss_pred             CCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEecCcccccCCceeHHHHHHHHHHHHHhcc
Confidence            469999999999999999999985543221100   0111222222110          000001112334555555445


Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++.+-...     ..+.    .+...+.+...+.+.++|++.|-..
T Consensus       108 ~~~llllDEp~~gld~-----~~~~----~l~~~ll~~l~~~~~~vi~~tH~~~  152 (202)
T cd03243         108 PRSLVLIDELGRGTST-----AEGL----AIAYAVLEHLLEKGCRTLFATHFHE  152 (202)
T ss_pred             CCeEEEEecCCCCCCH-----HHHH----HHHHHHHHHHHhcCCeEEEECChHH
Confidence            7899999999865432     1222    2222322323356899999999653

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.60  E-value=5.6e-07  Score=79.41  Aligned_cols=45  Identities=16%  Similarity=0.272  Sum_probs=33.4

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++-++.     ..+    ..+...|+++.++.+.++|+++|-..
T Consensus       151 ~P~lLLLDEPts~LD~-----~~~----~~l~~~L~~l~~~~g~tvI~vTHd~~  195 (369)
T PRK11000        151 EPSVFLLDEPLSNLDA-----ALR----VQMRIEISRLHKRLGRTMIYVTHDQV  195 (369)
T ss_pred             CCCEEEEeCCcccCCH-----HHH----HHHHHHHHHHHHHhCCEEEEEeCCHH
Confidence            7999999999976633     222    25666777888888999888888754

>PRK08116 hypothetical protein; Validated

Probab=98.60  E-value=3.3e-07  Score=77.46  Aligned_cols=70  Identities=16%  Similarity=0.167  Sum_probs=48.2

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHH-H-----HHHHHHHhhCCCceEEEEc
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV-I-----NYLDKFVSEHKDVKVVIID  147 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~-l-----~~l~~~l~~~~~~~lvVID  147 (226)
                      +.-+.|+|++|+|||+|+..++..+.      ..+.+|+|++..  .....+.. .     ....++++...++++||||
T Consensus       114 ~~gl~l~G~~GtGKThLa~aia~~l~------~~~~~v~~~~~~--~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviD  185 (268)
T PRK08116        114 NVGLLLWGSVGTGKTYLAACIANELI------EKGVPVIFVNFP--QLLNRIKSTYKSSGKEDENEIIRSLVNADLLILD  185 (268)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH------HcCCeEEEEEHH--HHHHHHHHHHhccccccHHHHHHHhcCCCEEEEe
Confidence            33589999999999999999999886      357889999843  11111110 0     1223444444568999999


Q ss_pred             CCch
Q 036464          148 SIAF  151 (226)
Q Consensus       148 sl~~  151 (226)
                      ++..
T Consensus       186 Dlg~  189 (268)
T PRK08116        186 DLGA  189 (268)
T ss_pred             cccC
Confidence            9974

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.60  E-value=6.9e-07  Score=70.03  Aligned_cols=106  Identities=16%  Similarity=0.118  Sum_probs=60.0

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC----CCCeEEEEeccccCc----hHHHH------------HHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG----LGGKAIYIGKCLGFY----TEQSA------------VINY  130 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~----~~~~vlyi~~e~~~~----~~~~~------------~l~~  130 (226)
                      +++|+++.|.|++|+|||||+..++....  ++.|.    ....+.|+..+....    .+.+.            ..-.
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~--~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~  101 (166)
T cd03223          24 IKPGDRLLITGPSGTGKSSLFRALAGLWP--WGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLA  101 (166)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHH
Confidence            78999999999999999999988876542  21110    013455554332111    11110            0111


Q ss_pred             HHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          131 LDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       131 l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +.+.+.  .+++++++|++++.++..      ...   .+.+.|++    ++.++|+++|-..
T Consensus       102 laral~--~~p~~lllDEPt~~LD~~------~~~---~l~~~l~~----~~~tiiivsh~~~  149 (166)
T cd03223         102 FARLLL--HKPKFVFLDEATSALDEE------SED---RLYQLLKE----LGITVISVGHRPS  149 (166)
T ss_pred             HHHHHH--cCCCEEEEECCccccCHH------HHH---HHHHHHHH----hCCEEEEEeCChh
Confidence            222222  268999999999866432      111   23333333    3678888877643

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=98.60  E-value=3e-07  Score=76.04  Aligned_cols=46  Identities=9%  Similarity=0.068  Sum_probs=33.9

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      +++++++|++++-++.     ..    ...+.+.|++++++.+.+||++.|-...
T Consensus       162 ~p~llllDEPt~~LD~-----~~----~~~l~~~l~~~~~~~~~tii~~tH~~~~  207 (241)
T cd03256         162 QPKLILADEPVASLDP-----AS----SRQVMDLLKRINREEGITVIVSLHQVDL  207 (241)
T ss_pred             CCCEEEEeCccccCCH-----HH----HHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            7899999999976633     11    2366677888887778899888887543

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.60  E-value=2.7e-07  Score=73.05  Aligned_cols=110  Identities=15%  Similarity=0.187  Sum_probs=62.9

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC-----C---------CCeEEEEeccccCch----H--------
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG-----L---------GGKAIYIGKCLGFYT----E--------  123 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~-----~---------~~~vlyi~~e~~~~~----~--------  123 (226)
                      -+++|+++.|.|++|+|||||+..++.... | ..|.     .         ...+.|+..+...+.    +        
T Consensus        24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~  101 (178)
T cd03247          24 ELKQGEKIALLGRSGSGKSTLLQLLTGDLK-P-QQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSG  101 (178)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccCC-C-CCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCH
Confidence            488999999999999999999998877643 1 1110     0         011233321110000    0        


Q ss_pred             -HHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464          124 -QSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN  195 (226)
Q Consensus       124 -~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~  195 (226)
                       +...+ .+...+.  .+++++++|++++-++.     ..+    ..+++.|+++. + +.+||+++|-....
T Consensus       102 G~~qrv-~laral~--~~p~~lllDEP~~~LD~-----~~~----~~l~~~l~~~~-~-~~tii~~sh~~~~~  160 (178)
T cd03247         102 GERQRL-ALARILL--QDAPIVLLDEPTVGLDP-----ITE----RQLLSLIFEVL-K-DKTLIWITHHLTGI  160 (178)
T ss_pred             HHHHHH-HHHHHHh--cCCCEEEEECCcccCCH-----HHH----HHHHHHHHHHc-C-CCEEEEEecCHHHH
Confidence             00011 1222222  26899999999976533     112    25556666664 3 78888888876543

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=98.60  E-value=3.5e-07  Score=75.50  Aligned_cols=29  Identities=31%  Similarity=0.165  Sum_probs=26.0

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +.+|+++.|.|++|+|||||+.-++....
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~   51 (232)
T cd03300          23 IKEGEFFTLLGPSGCGKTTLLRLIAGFET   51 (232)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            78999999999999999999988876653

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins

Probab=98.60  E-value=1.5e-07  Score=81.94  Aligned_cols=116  Identities=19%  Similarity=0.222  Sum_probs=78.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc--------c-------C---c--hHHH-----
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL--------G-------F---Y--TEQS-----  125 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~--------~-------~---~--~~~~-----  125 (226)
                      -..|+..+|-|.||+|||+|++.+...+.       ..++|+||++..        +       +   .  ..|-     
T Consensus         7 ~~~G~TLLIKG~PGTGKTtfaLelL~~l~-------~~~~v~YISTRVd~d~vy~~y~~~~~~i~~~~vlDatQd~~~~~   79 (484)
T PF07088_consen    7 QEPGQTLLIKGEPGTGKTTFALELLNSLK-------DHGNVMYISTRVDQDTVYEMYPWIEESIDPTNVLDATQDPFELP   79 (484)
T ss_pred             CCCCcEEEEecCCCCCceeeehhhHHHHh-------ccCCeEEEEeccCHHHHHHhhhhhccccChhhhhhhccchhhcc
Confidence            35799999999999999999999998885       677899999642        0       0   0  0000     


Q ss_pred             ---------HHHHHHHHHHh---hCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          126 ---------AVINYLDKFVS---EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       126 ---------~~l~~l~~~l~---~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                               ..++.+.++++   +.++.-+|++||+.+++.--......+ +.+..+.+.|-.+|++.++-+|++....+
T Consensus        80 ~~~~vp~~~l~~ds~~~f~~~i~~~~k~~iI~~DSWdaiieyla~~~~~~-ed~e~l~~dLv~lard~g~~LIlVsEsa~  158 (484)
T PF07088_consen   80 LDKDVPFERLDIDSFRDFVDKINEAGKKPIIAFDSWDAIIEYLAEEHDEP-EDIETLTNDLVELARDMGINLILVSESAE  158 (484)
T ss_pred             ccccCcccccCHHHHHHHHHHhhhcccCcEEEEecHHHHHHHhhhhhcCc-HHHHHHHHHHHHHHhhcCceEEEEEecCC
Confidence                     01334444444   345678999999877664211111112 22566777888899999999999988765


Q ss_pred             c
Q 036464          194 A  194 (226)
Q Consensus       194 ~  194 (226)
                      .
T Consensus       159 ~  159 (484)
T PF07088_consen  159 N  159 (484)
T ss_pred             C
Confidence            3

GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=3.5e-07  Score=78.78  Aligned_cols=128  Identities=19%  Similarity=0.160  Sum_probs=84.0

Q ss_pred             eecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe--cc-c-cC-chHHHHHHHH
Q 036464           56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG--KC-L-GF-YTEQSAVINY  130 (226)
Q Consensus        56 i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~--~e-~-~~-~~~~~~~l~~  130 (226)
                      +|-=-++|=+-+  ||.|-.=++++||||+|||.||..+|.+.-           +-||-  +. . .. ..|-..++..
T Consensus       169 LPL~~PElF~~~--GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~-----------AtFIrvvgSElVqKYiGEGaRlVRe  235 (406)
T COG1222         169 LPLKNPELFEEL--GIDPPKGVLLYGPPGTGKTLLAKAVANQTD-----------ATFIRVVGSELVQKYIGEGARLVRE  235 (406)
T ss_pred             ccccCHHHHHHc--CCCCCCceEeeCCCCCcHHHHHHHHHhccC-----------ceEEEeccHHHHHHHhccchHHHHH
Confidence            444444554444  566666699999999999999998887652           34443  21 0 01 1122246777


Q ss_pred             HHHHHhhCCCceEEEEcCCchhhhcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464          131 LDKFVSEHKDVKVVIIDSIAFHFRHGFV----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA  197 (226)
Q Consensus       131 l~~~l~~~~~~~lvVIDsl~~l~~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~  197 (226)
                      +-++.+++ .|.+|+||++.++-...++    ...+-++-|-+++..|.-+-..-|+-||...+--.-.++
T Consensus       236 lF~lArek-aPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDP  305 (406)
T COG1222         236 LFELAREK-APSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDP  305 (406)
T ss_pred             HHHHHhhc-CCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccCh
Confidence            77777775 8999999999987654443    233445556677777777777788888876655555554

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=7e-07  Score=78.28  Aligned_cols=45  Identities=20%  Similarity=0.294  Sum_probs=33.8

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++.+-++.     ..|.    ++...|+++.++.++++|++.|-..
T Consensus       154 ~P~lLLLDEP~s~LD~-----~~r~----~l~~~l~~l~~~~g~tii~vTHd~~  198 (351)
T PRK11432        154 KPKVLLFDEPLSNLDA-----NLRR----SMREKIRELQQQFNITSLYVTHDQS  198 (351)
T ss_pred             CCCEEEEcCCcccCCH-----HHHH----HHHHHHHHHHHhcCCEEEEEcCCHH
Confidence            6899999999976533     2232    5666777888888999999888764

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=3.3e-07  Score=75.57  Aligned_cols=46  Identities=13%  Similarity=0.182  Sum_probs=33.5

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      +++++++|++++-++..     .+    ..+.+.|++++++.+.+||++.|-...
T Consensus       147 ~p~lllLDEP~~gLD~~-----~~----~~~~~~l~~~~~~~~~tiii~sH~~~~  192 (232)
T PRK10771        147 EQPILLLDEPFSALDPA-----LR----QEMLTLVSQVCQERQLTLLMVSHSLED  192 (232)
T ss_pred             CCCEEEEeCCcccCCHH-----HH----HHHHHHHHHHHHhcCCEEEEEECCHHH
Confidence            78999999999765331     12    256667777777778888888877654

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=3.4e-07  Score=75.57  Aligned_cols=46  Identities=15%  Similarity=0.052  Sum_probs=33.4

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      +++++++|++++-++.     ..    ...+.+.|++++++.+.+||++.|-...
T Consensus       163 ~p~lllLDEPt~~LD~-----~~----~~~l~~~l~~~~~~~g~tvii~sH~~~~  208 (233)
T PRK11629        163 NPRLVLADEPTGNLDA-----RN----ADSIFQLLGELNRLQGTAFLVVTHDLQL  208 (233)
T ss_pred             CCCEEEEeCCCCCCCH-----HH----HHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            7899999999976633     11    2256667777776678999988887653

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=98.59  E-value=5.9e-07  Score=79.39  Aligned_cols=45  Identities=18%  Similarity=0.242  Sum_probs=34.1

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++.+-++.     ..|.    .+...|+++.++.++++|++.|-..
T Consensus       162 ~P~llLLDEP~s~LD~-----~~r~----~l~~~L~~l~~~~g~tiI~vTHd~~  206 (375)
T PRK09452        162 KPKVLLLDESLSALDY-----KLRK----QMQNELKALQRKLGITFVFVTHDQE  206 (375)
T ss_pred             CCCEEEEeCCCCcCCH-----HHHH----HHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            6899999999975532     2232    5667888888888999999888654

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.59  E-value=3.4e-07  Score=77.29  Aligned_cols=45  Identities=9%  Similarity=0.110  Sum_probs=33.2

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++-++..     .    ...+...|++++++.+.+||++.|-..
T Consensus       178 ~p~illLDEPt~~LD~~-----~----~~~l~~~l~~~~~~~g~tiii~tH~~~  222 (269)
T cd03294         178 DPDILLMDEAFSALDPL-----I----RREMQDELLRLQAELQKTIVFITHDLD  222 (269)
T ss_pred             CCCEEEEcCCCccCCHH-----H----HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            78999999999766331     1    225666777777777889988888754

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK06893 DNA replication initiation factor; Validated

Probab=98.59  E-value=3.3e-07  Score=75.61  Aligned_cols=65  Identities=17%  Similarity=0.107  Sum_probs=47.1

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCchhh
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHF  153 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~  153 (226)
                      ....|+||||+|||+|+..++..+.      ..+.++.|++.+.  ..      ....+.++...++++++||++..+.
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~~~------~~~~~~~y~~~~~--~~------~~~~~~~~~~~~~dlLilDDi~~~~  104 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNHYL------LNQRTAIYIPLSK--SQ------YFSPAVLENLEQQDLVCLDDLQAVI  104 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH------HcCCCeEEeeHHH--hh------hhhHHHHhhcccCCEEEEeChhhhc
Confidence            4578999999999999999999876      4567899998541  10      0112333344467999999998653

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=7.8e-07  Score=75.54  Aligned_cols=47  Identities=13%  Similarity=0.177  Sum_probs=34.5

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN  195 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~  195 (226)
                      +++++++|++++-++.     ..+    ..+...|++++++.+.+||++.|-....
T Consensus       162 ~p~llllDEPt~gLD~-----~~~----~~l~~~l~~l~~~~g~tillvtH~~~~~  208 (280)
T PRK13633        162 RPECIIFDEPTAMLDP-----SGR----REVVNTIKELNKKYGITIILITHYMEEA  208 (280)
T ss_pred             CCCEEEEeCCcccCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEecChHHH
Confidence            6899999999976533     222    2566777788777899999888776543

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.59  E-value=3.2e-07  Score=74.81  Aligned_cols=28  Identities=36%  Similarity=0.237  Sum_probs=25.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+.-++...
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          28 VKPGEVTGLLGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            7899999999999999999998887643

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.59  E-value=3e-07  Score=77.91  Aligned_cols=28  Identities=29%  Similarity=0.227  Sum_probs=25.4

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+..++...
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (274)
T PRK13647         28 IPEGSKTALLGPNGAGKSTLLLHLNGIY   55 (274)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            7899999999999999999998887644

>PRK08939 primosomal protein DnaI; Reviewed

Probab=98.59  E-value=4.8e-07  Score=77.81  Aligned_cols=70  Identities=16%  Similarity=0.142  Sum_probs=50.8

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHH---HHHHHHHhhCCCceEEEEcCCc
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVI---NYLDKFVSEHKDVKVVIIDSIA  150 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l---~~l~~~l~~~~~~~lvVIDsl~  150 (226)
                      +.-+.|+|++|+|||.|+..++..++      ..+.+|.|+...  .+...+...   ..+.+.+....+++++|||++.
T Consensus       156 ~~gl~L~G~~G~GKThLa~Aia~~l~------~~g~~v~~~~~~--~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG  227 (306)
T PRK08939        156 VKGLYLYGDFGVGKSYLLAAIANELA------KKGVSSTLLHFP--EFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIG  227 (306)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH------HcCCCEEEEEHH--HHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCC
Confidence            34588999999999999999999987      578889999743  222222111   1344556555689999999998


Q ss_pred             h
Q 036464          151 F  151 (226)
Q Consensus       151 ~  151 (226)
                      +
T Consensus       228 ~  228 (306)
T PRK08939        228 A  228 (306)
T ss_pred             C
Confidence            5

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.59  E-value=7.5e-07  Score=73.20  Aligned_cols=28  Identities=29%  Similarity=0.150  Sum_probs=25.4

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+.-++...
T Consensus        45 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   72 (224)
T cd03220          45 VPRGERIGLIGRNGAGKSTLLRLLAGIY   72 (224)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999998887654

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.58  E-value=3.6e-07  Score=73.93  Aligned_cols=28  Identities=32%  Similarity=0.381  Sum_probs=25.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.||+|+|||||+..++...
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          23 LYAGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999999998877643

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=98.58  E-value=3.3e-07  Score=79.61  Aligned_cols=45  Identities=16%  Similarity=0.223  Sum_probs=34.5

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++|+|++++.++.     ..+    .++++.|+++.++++.++|+++|-..
T Consensus       172 ~P~lLilDEPts~LD~-----~~~----~~i~~lL~~l~~~~g~til~iTHdl~  216 (327)
T PRK11308        172 DPDVVVADEPVSALDV-----SVQ----AQVLNLMMDLQQELGLSYVFISHDLS  216 (327)
T ss_pred             CCCEEEEECCCccCCH-----HHH----HHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            7899999999986643     122    26777888888888999998887653

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.58  E-value=3.6e-07  Score=77.51  Aligned_cols=46  Identities=13%  Similarity=0.180  Sum_probs=34.1

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      +++++++|++++-++.     ..    ...+...|++++++++.+||+++|-...
T Consensus       158 ~p~llllDEPt~~LD~-----~~----~~~l~~~l~~l~~~~g~tiil~sH~~~~  203 (277)
T PRK13642        158 RPEIIILDESTSMLDP-----TG----RQEIMRVIHEIKEKYQLTVLSITHDLDE  203 (277)
T ss_pred             CCCEEEEeCCcccCCH-----HH----HHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            6899999999976533     12    2256677788887789999988887644

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.58  E-value=3.2e-07  Score=75.92  Aligned_cols=45  Identities=9%  Similarity=0.059  Sum_probs=33.7

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++-++..     .    ...+.+.|++++++.+.+||++.|-..
T Consensus       171 ~p~llllDEPt~~LD~~-----~----~~~l~~~l~~~~~~~~~tiiivsH~~~  215 (236)
T cd03267         171 EPEILFLDEPTIGLDVV-----A----QENIRNFLKEYNRERGTTVLLTSHYMK  215 (236)
T ss_pred             CCCEEEEcCCCCCCCHH-----H----HHHHHHHHHHHHhcCCCEEEEEecCHH
Confidence            68999999999766331     1    225667777787777899999888765

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.58  E-value=3.8e-07  Score=77.35  Aligned_cols=46  Identities=9%  Similarity=0.141  Sum_probs=33.9

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      +++++|+|++++-++..     .    ...+.+.|+++.++++.+||+++|-...
T Consensus       155 ~p~llilDEPt~gLD~~-----~----~~~l~~~l~~l~~~~g~tvli~tH~~~~  200 (277)
T PRK13652        155 EPQVLVLDEPTAGLDPQ-----G----VKELIDFLNDLPETYGMTVIFSTHQLDL  200 (277)
T ss_pred             CCCEEEEeCCcccCCHH-----H----HHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence            78999999999765331     1    2256677778877778999988887543

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.58  E-value=3.7e-07  Score=75.59  Aligned_cols=45  Identities=13%  Similarity=0.124  Sum_probs=33.0

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++-++.     ..+    ..+...|++++++.+.+||+++|-..
T Consensus       154 ~p~llllDEP~~~LD~-----~~~----~~l~~~l~~~~~~~~~tvii~sH~~~  198 (239)
T cd03296         154 EPKVLLLDEPFGALDA-----KVR----KELRRWLRRLHDELHVTTVFVTHDQE  198 (239)
T ss_pred             CCCEEEEcCCcccCCH-----HHH----HHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            7899999999976633     122    25666777777777889988887754

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=98.58  E-value=8.6e-07  Score=72.92  Aligned_cols=46  Identities=13%  Similarity=0.099  Sum_probs=33.1

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      +++++++|++++-++.     ..+    ..+.+.|++++++.+.+||+++|-...
T Consensus       149 ~p~illlDEPt~~LD~-----~~~----~~l~~~l~~~~~~~~~tii~~sH~~~~  194 (230)
T TIGR03410       149 RPKLLLLDEPTEGIQP-----SII----KDIGRVIRRLRAEGGMAILLVEQYLDF  194 (230)
T ss_pred             CCCEEEecCCcccCCH-----HHH----HHHHHHHHHHHHcCCcEEEEEeCCHHH
Confidence            7899999999976533     122    256667777776678899888887653

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=98.57  E-value=4.8e-07  Score=74.35  Aligned_cols=47  Identities=13%  Similarity=0.110  Sum_probs=34.5

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN  195 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~  195 (226)
                      +++++++|++++-++..     .    ...+.+.|++++++++.+||++.|-....
T Consensus       155 ~p~llllDEPt~~LD~~-----~----~~~l~~~l~~~~~~~~~tvii~sh~~~~~  201 (225)
T PRK10247        155 MPKVLLLDEITSALDES-----N----KHNVNEIIHRYVREQNIAVLWVTHDKDEI  201 (225)
T ss_pred             CCCEEEEeCCcccCCHH-----H----HHHHHHHHHHHHHhcCCEEEEEECChHHH
Confidence            78999999999765331     1    23566777788877889998888876543

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.57  E-value=8.6e-07  Score=78.03  Aligned_cols=45  Identities=13%  Similarity=0.251  Sum_probs=33.1

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHc-CCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKF-SLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~-~~~vi~~nq~~~  193 (226)
                      +++++++|++.+-++.     ..|.    ++...|+++.+++ ++++|++.|-..
T Consensus       155 ~P~llLLDEP~s~LD~-----~~r~----~l~~~l~~l~~~~~g~til~vTHd~~  200 (362)
T TIGR03258       155 EPDVLLLDEPLSALDA-----NIRA----NMREEIAALHEELPELTILCVTHDQD  200 (362)
T ss_pred             CCCEEEEcCccccCCH-----HHHH----HHHHHHHHHHHhCCCCEEEEEeCCHH
Confidence            7999999999975532     2232    5666777888887 899888887654

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=98.57  E-value=3.9e-07  Score=73.60  Aligned_cols=28  Identities=25%  Similarity=0.194  Sum_probs=25.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+.-++...
T Consensus        21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608        21 IEKGKMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999999998887654

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.57  E-value=9.2e-07  Score=75.25  Aligned_cols=45  Identities=18%  Similarity=0.223  Sum_probs=33.7

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++.++.     ..+    ..+...|++++++.|.+||++.|-..
T Consensus       159 ~p~lLilDEPt~gLD~-----~~~----~~l~~~l~~l~~~~g~tillvsH~~~  203 (283)
T PRK13636        159 EPKVLVLDEPTAGLDP-----MGV----SEIMKLLVEMQKELGLTIIIATHDID  203 (283)
T ss_pred             CCCEEEEeCCccCCCH-----HHH----HHHHHHHHHHHHhCCCEEEEEecCHH
Confidence            7899999999976633     122    25667778888778899998887754

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=98.57  E-value=3.8e-07  Score=75.09  Aligned_cols=28  Identities=25%  Similarity=0.201  Sum_probs=25.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+..++...
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218          23 VKQGEIVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999998887543

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=98.57  E-value=3.9e-07  Score=72.82  Aligned_cols=28  Identities=29%  Similarity=0.299  Sum_probs=24.9

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+|+++.|.|++|+|||||+..++...
T Consensus        15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        15 AERGEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999998776543

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.57  E-value=7.8e-07  Score=77.65  Aligned_cols=28  Identities=18%  Similarity=0.224  Sum_probs=25.4

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.||+|+|||||+..++...
T Consensus        64 i~~Gei~gLlGpNGaGKSTLl~~L~Gl~   91 (340)
T PRK13536         64 VASGECFGLLGPNGAGKSTIARMILGMT   91 (340)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            7899999999999999999998887654

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=98.57  E-value=1.1e-06  Score=72.73  Aligned_cols=45  Identities=13%  Similarity=0.231  Sum_probs=32.8

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++-++.     ..+    ..+...|++++.+++.++|++.|-..
T Consensus       147 ~p~llllDEPt~gLD~-----~~~----~~l~~~l~~~~~~~~~tili~tH~~~  191 (235)
T cd03299         147 NPKILLLDEPFSALDV-----RTK----EKLREELKKIRKEFGVTVLHVTHDFE  191 (235)
T ss_pred             CCCEEEECCCcccCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEecCHH
Confidence            7899999999976533     122    25667777887777889888877654

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=98.57  E-value=8.2e-07  Score=78.54  Aligned_cols=45  Identities=11%  Similarity=0.237  Sum_probs=33.3

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++.+-++.     ..|.    .+...|+++.++.++++|++.|-..
T Consensus       167 ~P~lLLLDEP~s~LD~-----~~r~----~l~~~l~~l~~~~g~tii~vTHd~~  211 (377)
T PRK11607        167 RPKLLLLDEPMGALDK-----KLRD----RMQLEVVDILERVGVTCVMVTHDQE  211 (377)
T ss_pred             CCCEEEEeCCcccCCH-----HHHH----HHHHHHHHHHHhcCCEEEEEcCCHH
Confidence            7899999999976532     2222    4556777777888999999988764

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=98.57  E-value=3.8e-07  Score=71.74  Aligned_cols=105  Identities=20%  Similarity=0.158  Sum_probs=61.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc--------------------cCchHHH-H---
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL--------------------GFYTEQS-A---  126 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~--------------------~~~~~~~-~---  126 (226)
                      +++|+++.|.|++|+|||||+.-++.... | .    .+. ++++.+.                    ..+.... +   
T Consensus        25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~-~-~----~G~-i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lL   97 (171)
T cd03228          25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYD-P-T----SGE-ILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENIL   97 (171)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHcCCC-C-C----CCE-EEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhh
Confidence            78999999999999999999988876542 1 1    122 2333210                    0000000 0   


Q ss_pred             -----HHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464          127 -----VINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN  195 (226)
Q Consensus       127 -----~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~  195 (226)
                           ..-.+...+.  .+++++++|++++-++.     ..+    .++.+.|+++.+  +.++|++.|-....
T Consensus        98 S~G~~~rl~la~al~--~~p~llllDEP~~gLD~-----~~~----~~l~~~l~~~~~--~~tii~~sh~~~~~  158 (171)
T cd03228          98 SGGQRQRIAIARALL--RDPPILILDEATSALDP-----ETE----ALILEALRALAK--GKTVIVIAHRLSTI  158 (171)
T ss_pred             CHHHHHHHHHHHHHh--cCCCEEEEECCCcCCCH-----HHH----HHHHHHHHHhcC--CCEEEEEecCHHHH
Confidence                 0011222222  36899999999976533     122    245556666643  58888888765443

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=98.56  E-value=4.5e-07  Score=72.89  Aligned_cols=110  Identities=16%  Similarity=0.065  Sum_probs=61.9

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhc-cccccCC------------CCCeEEEEeccccC-----chHHHHHH---
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQ-IPVEFGG------------LGGKAIYIGKCLGF-----YTEQSAVI---  128 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~-lp~~~~~------------~~~~vlyi~~e~~~-----~~~~~~~l---  128 (226)
                      -+.+|+++.|.|++|+|||||+.-++.... .|. .|.            ....+.|+..+...     ..+.+...   
T Consensus        31 ~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~-~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~  109 (194)
T cd03213          31 KAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGV-SGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKL  109 (194)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC-ceEEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHh
Confidence            378999999999999999999988876540 121 110            01123333322111     11111100   


Q ss_pred             ----------HHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          129 ----------NYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       129 ----------~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                                -.+...+.  .+++++++|++++-++.     ..+    ..+.+.|+++.+ .+.++|++.|-.
T Consensus       110 ~~LS~G~~qrv~laral~--~~p~illlDEP~~~LD~-----~~~----~~l~~~l~~~~~-~~~tiii~sh~~  171 (194)
T cd03213         110 RGLSGGERKRVSIALELV--SNPSLLFLDEPTSGLDS-----SSA----LQVMSLLRRLAD-TGRTIICSIHQP  171 (194)
T ss_pred             ccCCHHHHHHHHHHHHHH--cCCCEEEEeCCCcCCCH-----HHH----HHHHHHHHHHHh-CCCEEEEEecCc
Confidence                      01122222  26899999999976532     122    245556666654 488888888764

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=98.56  E-value=6.3e-07  Score=75.13  Aligned_cols=74  Identities=27%  Similarity=0.413  Sum_probs=52.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHH-HH--HHH-HHHhhCCCceEEEE
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV-IN--YLD-KFVSEHKDVKVVII  146 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~-l~--~l~-~~l~~~~~~~lvVI  146 (226)
                      ++.+.-+.++|+||+|||+|+..++..++      ..+.+|+|+..-  +....+.. .+  ..+ ++.....+++|+||
T Consensus       102 ~~~~~nl~l~G~~G~GKThLa~Ai~~~l~------~~g~sv~f~~~~--el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIi  173 (254)
T COG1484         102 FERGENLVLLGPPGVGKTHLAIAIGNELL------KAGISVLFITAP--DLLSKLKAAFDEGRLEEKLLRELKKVDLLII  173 (254)
T ss_pred             hccCCcEEEECCCCCcHHHHHHHHHHHHH------HcCCeEEEEEHH--HHHHHHHHHHhcCchHHHHHHHhhcCCEEEE
Confidence            34677899999999999999999999987      468899999843  22222211 11  122 22332457999999


Q ss_pred             cCCchh
Q 036464          147 DSIAFH  152 (226)
Q Consensus       147 Dsl~~l  152 (226)
                      |++...
T Consensus       174 DDlG~~  179 (254)
T COG1484         174 DDIGYE  179 (254)
T ss_pred             ecccCc
Confidence            999853

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.56  E-value=5.6e-07  Score=72.89  Aligned_cols=28  Identities=21%  Similarity=0.126  Sum_probs=25.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+..++...
T Consensus        23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268          23 VKKGEIYGFLGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            7899999999999999999998887643

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=98.56  E-value=5.2e-07  Score=74.73  Aligned_cols=46  Identities=9%  Similarity=0.044  Sum_probs=33.4

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      +++++++|++++-++..     .    ...+.+.|++++++.+.+||+++|-...
T Consensus       148 ~p~llllDEP~~~LD~~-----~----~~~~~~~l~~~~~~~~~tvli~sH~~~~  193 (237)
T TIGR00968       148 EPQVLLLDEPFGALDAK-----V----RKELRSWLRKLHDEVHVTTVFVTHDQEE  193 (237)
T ss_pred             CCCEEEEcCCcccCCHH-----H----HHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            68999999999765331     1    2356667777777778999998887653

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.55  E-value=4.6e-07  Score=77.35  Aligned_cols=45  Identities=11%  Similarity=0.077  Sum_probs=34.5

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +|+++++|++++-++..         ....+...|+++++++|.|||++.|-..
T Consensus       163 ~P~llllDEPt~~LD~~---------~~~~l~~~L~~l~~~~g~tviiitHd~~  207 (290)
T PRK13634        163 EPEVLVLDEPTAGLDPK---------GRKEMMEMFYKLHKEKGLTTVLVTHSME  207 (290)
T ss_pred             CCCEEEEECCcccCCHH---------HHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            79999999999766331         1236677788888888999999888754

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.55  E-value=4.5e-07  Score=72.06  Aligned_cols=110  Identities=22%  Similarity=0.249  Sum_probs=63.4

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccC-----C-----------CCCeEEEEeccc-----c---CchHHH
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG-----G-----------LGGKAIYIGKCL-----G---FYTEQS  125 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~-----~-----------~~~~vlyi~~e~-----~---~~~~~~  125 (226)
                      -+++|+++.|.|++|+|||||+.-++.... | +.|     +           ...++.|+..+.     .   ...+.+
T Consensus        22 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~-~-~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l   99 (182)
T cd03215          22 EVRAGEIVGIAGLVGNGQTELAEALFGLRP-P-ASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENI   99 (182)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCCC-C-CCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCCcHHHHH
Confidence            378999999999999999999988776542 2 111     0           011344443220     0   001111


Q ss_pred             HHH--------H--HHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          126 AVI--------N--YLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       126 ~~l--------~--~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      ...        .  .+...+  ..+++++++|++++-++.     ..+    ..+.+.|+++++ .+.++|++.|-..
T Consensus       100 ~~~~~LS~G~~qrl~la~al--~~~p~llllDEP~~~LD~-----~~~----~~l~~~l~~~~~-~~~tiii~sh~~~  165 (182)
T cd03215         100 ALSSLLSGGNQQKVVLARWL--ARDPRVLILDEPTRGVDV-----GAK----AEIYRLIRELAD-AGKAVLLISSELD  165 (182)
T ss_pred             HHHhhcCHHHHHHHHHHHHH--ccCCCEEEECCCCcCCCH-----HHH----HHHHHHHHHHHH-CCCEEEEEeCCHH
Confidence            110        0  111122  237899999999976633     122    255566666654 4788888888654

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.55  E-value=4.9e-07  Score=73.86  Aligned_cols=29  Identities=24%  Similarity=0.213  Sum_probs=25.1

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.||+|+|||||+.-++...
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224          22 TVPEGEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             EEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998776543

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.55  E-value=4.7e-07  Score=73.45  Aligned_cols=29  Identities=28%  Similarity=0.245  Sum_probs=25.5

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.|++|+|||||+..++...
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (207)
T PRK13539         24 TLAAGEALVLTGPNGSGKTTLLRLIAGLL   52 (207)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999998777653

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.55  E-value=4.6e-07  Score=73.29  Aligned_cols=29  Identities=34%  Similarity=0.342  Sum_probs=25.6

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.|++|+|||||+.-++...
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (204)
T PRK13538         23 TLNAGELVQIEGPNGAGKTSLLRILAGLA   51 (204)
T ss_pred             EECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999998777653

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=98.55  E-value=3.8e-07  Score=78.91  Aligned_cols=40  Identities=25%  Similarity=0.142  Sum_probs=31.6

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      ++.|+++.|.||+||||||++.-+|--..       ...+-++|+.+
T Consensus        26 i~~Gef~vllGPSGcGKSTlLr~IAGLe~-------~~~G~I~i~g~   65 (338)
T COG3839          26 IEDGEFVVLLGPSGCGKSTLLRMIAGLEE-------PTSGEILIDGR   65 (338)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC-------CCCceEEECCE
Confidence            78999999999999999999988775442       34556777644

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.54  E-value=5.7e-07  Score=74.66  Aligned_cols=46  Identities=13%  Similarity=0.130  Sum_probs=33.4

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      +++++++|++++-++..     .    ...+...|++++++.+.+||++.|-...
T Consensus       149 ~p~llllDEPt~~LD~~-----~----~~~l~~~l~~~~~~~g~tii~~sH~~~~  194 (241)
T PRK14250        149 NPEVLLLDEPTSALDPT-----S----TEIIEELIVKLKNKMNLTVIWITHNMEQ  194 (241)
T ss_pred             CCCEEEEeCCcccCCHH-----H----HHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence            78999999999766331     1    2256667777777778899988887653

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=98.54  E-value=5.7e-07  Score=70.95  Aligned_cols=45  Identities=16%  Similarity=0.186  Sum_probs=32.6

Q ss_pred             eEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464          142 KVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN  195 (226)
Q Consensus       142 ~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~  195 (226)
                      -++.+|++-+.+++     .-|.    +++..+..++.+.+.|++++.|.-.+.
T Consensus       149 PilLLDEPFsALdP-----~LR~----eMl~Lv~~l~~E~~~TllmVTH~~~Da  193 (231)
T COG3840         149 PILLLDEPFSALDP-----ALRA----EMLALVSQLCDERKMTLLMVTHHPEDA  193 (231)
T ss_pred             CeEEecCchhhcCH-----HHHH----HHHHHHHHHHHhhCCEEEEEeCCHHHH
Confidence            47888998765533     3344    556677889999999999888876543

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.54  E-value=5.4e-07  Score=73.24  Aligned_cols=28  Identities=32%  Similarity=0.185  Sum_probs=25.1

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      -+++|+++.|.|++|+|||||+.-++..
T Consensus        24 ~i~~G~~~~l~G~nGsGKSTLl~~i~Gl   51 (214)
T TIGR02673        24 HIRKGEFLFLTGPSGAGKTTLLKLLYGA   51 (214)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999999999877654

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.54  E-value=5.5e-07  Score=76.73  Aligned_cols=45  Identities=7%  Similarity=0.099  Sum_probs=33.3

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++-++.     ..+    ..+...|+++.++.+.|||++.|-..
T Consensus       163 ~p~illlDEPt~~LD~-----~~~----~~l~~~l~~l~~~~g~tvl~vtH~~~  207 (286)
T PRK13646        163 NPDIIVLDEPTAGLDP-----QSK----RQVMRLLKSLQTDENKTIILVSHDMN  207 (286)
T ss_pred             CCCEEEEECCcccCCH-----HHH----HHHHHHHHHHHHhCCCEEEEEecCHH
Confidence            7899999999976633     122    25666777777778999998887754

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.54  E-value=1.1e-06  Score=75.43  Aligned_cols=28  Identities=25%  Similarity=0.259  Sum_probs=25.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.||+|+|||||+..++...
T Consensus        27 i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~   54 (303)
T TIGR01288        27 IARGECFGLLGPNGAGKSTIARMLLGMI   54 (303)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999998887643

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=98.54  E-value=5.6e-07  Score=72.62  Aligned_cols=114  Identities=16%  Similarity=0.039  Sum_probs=64.1

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccC-----C-----------CCCeEEEEeccccCch----HH-HH--
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG-----G-----------LGGKAIYIGKCLGFYT----EQ-SA--  126 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~-----~-----------~~~~vlyi~~e~~~~~----~~-~~--  126 (226)
                      -+.+|+++.|.|++|+|||||+.-++.....+++.|     +           ....+.|+..+...+.    .+ +.  
T Consensus        22 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~~~  101 (200)
T cd03217          22 TIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLRYV  101 (200)
T ss_pred             EECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHhhc
Confidence            378999999999999999999988876531111111     0           0012444432210000    00 00  


Q ss_pred             ---------HHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464          127 ---------VINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN  195 (226)
Q Consensus       127 ---------~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~  195 (226)
                               ..-.+...+.  .+++++++|++++-++..     .    ...+...|+++++ .+.++|+++|-....
T Consensus       102 ~~~LS~G~~qrv~laral~--~~p~illlDEPt~~LD~~-----~----~~~l~~~L~~~~~-~~~tiii~sh~~~~~  167 (200)
T cd03217         102 NEGFSGGEKKRNEILQLLL--LEPDLAILDEPDSGLDID-----A----LRLVAEVINKLRE-EGKSVLIITHYQRLL  167 (200)
T ss_pred             cccCCHHHHHHHHHHHHHh--cCCCEEEEeCCCccCCHH-----H----HHHHHHHHHHHHH-CCCEEEEEecCHHHH
Confidence                     0011122222  368999999999765321     1    2255667777654 478888887766543

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.54  E-value=5.7e-07  Score=76.00  Aligned_cols=29  Identities=28%  Similarity=0.241  Sum_probs=25.7

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.|++|+|||||+..++...
T Consensus        31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (271)
T PRK13632         31 EINEGEYVAILGHNGSGKSTISKILTGLL   59 (271)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            48899999999999999999998777654

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.54  E-value=6.4e-07  Score=72.23  Aligned_cols=28  Identities=25%  Similarity=0.262  Sum_probs=24.9

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+|+++.|.|++|+|||||+.-++...
T Consensus        24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540         24 LPAGGLLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999999998776543

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=98.54  E-value=1.2e-06  Score=76.90  Aligned_cols=45  Identities=11%  Similarity=0.166  Sum_probs=33.5

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++-++.     ..+    ..+...|++++++++.++|++.|-..
T Consensus       146 ~p~llLLDEPts~LD~-----~~~----~~l~~~L~~l~~~~g~tii~vTHd~~  190 (352)
T PRK11144        146 APELLLMDEPLASLDL-----PRK----RELLPYLERLAREINIPILYVSHSLD  190 (352)
T ss_pred             CCCEEEEcCCcccCCH-----HHH----HHHHHHHHHHHHhcCCeEEEEecCHH
Confidence            6899999999976533     222    25667778888888999988888654

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.53  E-value=5.3e-07  Score=72.81  Aligned_cols=28  Identities=32%  Similarity=0.291  Sum_probs=24.8

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+.-++...
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (201)
T cd03231          23 LAAGEALQVTGPNGSGKTTLLRILAGLS   50 (201)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999998776543

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.53  E-value=5.8e-07  Score=75.77  Aligned_cols=46  Identities=15%  Similarity=0.155  Sum_probs=33.8

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      +++++++|++++.++.     ..    ...+.+.|++++++++.+||+++|-...
T Consensus       167 ~p~lllLDEPt~~LD~-----~~----~~~l~~~l~~~~~~~g~tviivsH~~~~  212 (267)
T PRK15112        167 RPKVIIADEALASLDM-----SM----RSQLINLMLELQEKQGISYIYVTQHLGM  212 (267)
T ss_pred             CCCEEEEcCCcccCCH-----HH----HHHHHHHHHHHHHHcCcEEEEEeCCHHH
Confidence            7899999999976633     11    2256677778877788898888887643

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=98.53  E-value=6.4e-07  Score=74.23  Aligned_cols=46  Identities=7%  Similarity=0.008  Sum_probs=33.4

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      +++++++|++++.++..     .    ...+.+.|++++++.+.+||++.|-...
T Consensus       163 ~p~llllDEPt~~LD~~-----~----~~~l~~~l~~~~~~~~~tiii~tH~~~~  208 (243)
T TIGR02315       163 QPDLILADEPIASLDPK-----T----SKQVMDYLKRINKEDGITVIINLHQVDL  208 (243)
T ss_pred             CCCEEEEeCCcccCCHH-----H----HHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            78999999999766331     1    2256667777777778899888886643

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=98.53  E-value=6.8e-07  Score=73.93  Aligned_cols=123  Identities=18%  Similarity=0.196  Sum_probs=79.1

Q ss_pred             hhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchH-----HHHHHHHHHHHH
Q 036464           61 ADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE-----QSAVINYLDKFV  135 (226)
Q Consensus        61 ~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~-----~~~~l~~l~~~l  135 (226)
                      ..|-+-+  ||.+-.=++++||||+|||.|+..+|.+-.           ..||--...++..     -...+.++-++.
T Consensus       178 ~~ly~qi--gidpprgvllygppg~gktml~kava~~t~-----------a~firvvgsefvqkylgegprmvrdvfrla  244 (408)
T KOG0727|consen  178 ADLYKQI--GIDPPRGVLLYGPPGTGKTMLAKAVANHTT-----------AAFIRVVGSEFVQKYLGEGPRMVRDVFRLA  244 (408)
T ss_pred             HHHHHHh--CCCCCcceEEeCCCCCcHHHHHHHHhhccc-----------hheeeeccHHHHHHHhccCcHHHHHHHHHH
Confidence            3444444  455555589999999999999998887653           3343311111221     224567777777


Q ss_pred             hhCCCceEEEEcCCchhhhcCcCC----hHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464          136 SEHKDVKVVIIDSIAFHFRHGFVD----LALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA  197 (226)
Q Consensus       136 ~~~~~~~lvVIDsl~~l~~~~~~~----~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~  197 (226)
                      +++ .+.+|+||++.++....++.    ..+-++.+-++++.+..+-...|+-||+..+-....+.
T Consensus       245 ken-apsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradtldp  309 (408)
T KOG0727|consen  245 KEN-APSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADTLDP  309 (408)
T ss_pred             hcc-CCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccccCH
Confidence            776 78999999999887666552    22234445555555555666778888877666555554

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.52  E-value=6.9e-07  Score=74.13  Aligned_cols=45  Identities=7%  Similarity=0.026  Sum_probs=32.8

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++-++..     .    ...+.+.|++++++.+.+||++.|-..
T Consensus       153 ~p~llllDEPt~~LD~~-----~----~~~l~~~L~~~~~~~g~tvii~sH~~~  197 (242)
T cd03295         153 DPPLLLMDEPFGALDPI-----T----RDQLQEEFKRLQQELGKTIVFVTHDID  197 (242)
T ss_pred             CCCEEEecCCcccCCHH-----H----HHHHHHHHHHHHHHcCCEEEEEecCHH
Confidence            78999999999765331     1    225667777887777888888877654

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=98.52  E-value=6.8e-07  Score=73.19  Aligned_cols=115  Identities=13%  Similarity=0.030  Sum_probs=60.0

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhc-cccccC------CCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEE
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQ-IPVEFG------GLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVII  146 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~-lp~~~~------~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVI  146 (226)
                      ...+.|+|+||+|||+++.+++.... +..+..      .....++-++..  ...+.  ..+.+..+-....+++.|||
T Consensus        12 ~~~~liyG~~G~GKtt~a~~~~~~~~~~~~d~~~~~l~g~~~~~v~~~d~~--~~~~~--~~d~l~~~~~~~~~ydtVVI   87 (220)
T TIGR01618        12 PNMYLIYGKPGTGKTSTIKYLPGKTLVLSFDMSSKVLIGDENVDIADHDDM--PPIQA--MVEFYVMQNIQAVKYDNIVI   87 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHhcCCCCEEEeccccchhccCCCCCceeecCCC--CCHHH--HHHHHHHHHhccccCCEEEE
Confidence            45699999999999999988753221 111100      011111111100  11111  12222222222346899999


Q ss_pred             cCCchhhhcCc-----------CChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          147 DSIAFHFRHGF-----------VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       147 Dsl~~l~~~~~-----------~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      |+++.+.+.-+           .+...-...-..+++.|+.+. +.+..||+|+|...
T Consensus        88 DsI~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~-~~g~nII~tAhe~~  144 (220)
T TIGR01618        88 DNISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLK-ESNKNIYATAWELT  144 (220)
T ss_pred             ecHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHH-hCCCcEEEEEeecc
Confidence            99998765100           011111112224555666664 49999999999964

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.52  E-value=1.3e-06  Score=73.80  Aligned_cols=28  Identities=32%  Similarity=0.395  Sum_probs=25.3

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+.-++...
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   57 (269)
T PRK11831         30 VPRGKITAIMGPSGIGKTTLLRLIGGQI   57 (269)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999998777654

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.52  E-value=1.6e-06  Score=69.51  Aligned_cols=111  Identities=18%  Similarity=0.074  Sum_probs=62.7

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC-----------CCCeEEEEecccc-----CchHHHHHHH-----
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG-----------LGGKAIYIGKCLG-----FYTEQSAVIN-----  129 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~-----------~~~~vlyi~~e~~-----~~~~~~~~l~-----  129 (226)
                      +.+|+++.|.|++|+|||||+.-++.....++..|.           ....+.|+..+..     ...+.+....     
T Consensus        30 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~L  109 (192)
T cd03232          30 VKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRGL  109 (192)
T ss_pred             EeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHHhcC
Confidence            789999999999999999999888754321111110           0112333332110     0111111100     


Q ss_pred             --------HHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          130 --------YLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       130 --------~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                              .+...+  ..+++++++|++++-++.     ..+    ..+...|+++++ .+.++|++.|-..
T Consensus       110 SgGe~qrv~la~al--~~~p~vlllDEP~~~LD~-----~~~----~~l~~~l~~~~~-~~~tiiivtH~~~  169 (192)
T cd03232         110 SVEQRKRLTIGVEL--AAKPSILFLDEPTSGLDS-----QAA----YNIVRFLKKLAD-SGQAILCTIHQPS  169 (192)
T ss_pred             CHHHhHHHHHHHHH--hcCCcEEEEeCCCcCCCH-----HHH----HHHHHHHHHHHH-cCCEEEEEEcCCh
Confidence                    111112  236899999999976532     122    255666777664 5888888877643

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10908 cell division protein FtsE; Provisional

Probab=98.52  E-value=1.6e-06  Score=70.93  Aligned_cols=28  Identities=21%  Similarity=0.172  Sum_probs=25.3

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+|+++.|.|++|+|||||+..++...
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (222)
T PRK10908         25 MRPGEMAFLTGHSGAGKSTLLKLICGIE   52 (222)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999998887543

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.52  E-value=1.3e-06  Score=76.61  Aligned_cols=45  Identities=9%  Similarity=0.116  Sum_probs=33.6

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++.+-++.     ..+.    .+.+.|+++.+++++++|++.|-..
T Consensus       154 ~P~llLLDEP~s~LD~-----~~r~----~l~~~L~~l~~~~g~tii~vTHd~~  198 (353)
T PRK10851        154 EPQILLLDEPFGALDA-----QVRK----ELRRWLRQLHEELKFTSVFVTHDQE  198 (353)
T ss_pred             CCCEEEEeCCCccCCH-----HHHH----HHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            7899999999976533     2222    5667777888888999998887654

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.51  E-value=5.9e-07  Score=73.33  Aligned_cols=28  Identities=25%  Similarity=0.173  Sum_probs=25.4

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+.-++...
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263          25 VYKGEIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999998887654

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=98.51  E-value=1.5e-06  Score=75.58  Aligned_cols=45  Identities=16%  Similarity=0.221  Sum_probs=33.9

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++|+|++++.++.     ..+    .++++.|+++.++++.++|++.|-..
T Consensus       179 ~P~llilDEPts~LD~-----~~~----~~i~~lL~~l~~~~~~til~iTHdl~  223 (331)
T PRK15079        179 EPKLIICDEPVSALDV-----SIQ----AQVVNLLQQLQREMGLSLIFIAHDLA  223 (331)
T ss_pred             CCCEEEEeCCCccCCH-----HHH----HHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            7999999999976633     222    26667777887788999999887654

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.51  E-value=7.6e-07  Score=74.72  Aligned_cols=28  Identities=32%  Similarity=0.320  Sum_probs=25.3

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+.-++...
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   52 (258)
T PRK13548         25 LRPGEVVAILGPNGAGKSTLLRALSGEL   52 (258)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999998887653

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.51  E-value=1.6e-06  Score=72.41  Aligned_cols=46  Identities=9%  Similarity=0.112  Sum_probs=33.7

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      +++++++|++++-++.     ..+    ..+.+.|++++++.+.+||++.|-...
T Consensus       171 ~p~llllDEPt~~LD~-----~~~----~~l~~~L~~~~~~~~~tii~~sH~~~~  216 (255)
T PRK11300        171 QPEILMLDEPAAGLNP-----KET----KELDELIAELRNEHNVTVLLIEHDMKL  216 (255)
T ss_pred             CCCEEEEcCCccCCCH-----HHH----HHHHHHHHHHHhhcCCEEEEEeCCHHH
Confidence            7999999999976633     122    256667777777778999988887643

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=98.51  E-value=1.5e-06  Score=73.13  Aligned_cols=45  Identities=11%  Similarity=0.129  Sum_probs=33.1

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++-++.     ..    ...+...|++++++.+.+||+++|-..
T Consensus       165 ~p~lllLDEPt~~LD~-----~~----~~~~~~~l~~l~~~~~~tiii~sH~~~  209 (265)
T PRK10575        165 DSRCLLLDEPTSALDI-----AH----QVDVLALVHRLSQERGLTVIAVLHDIN  209 (265)
T ss_pred             CCCEEEEcCCcccCCH-----HH----HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            7899999999976533     12    225667777777777889888888654

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=98.51  E-value=1.7e-06  Score=69.60  Aligned_cols=28  Identities=36%  Similarity=0.392  Sum_probs=25.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+|+++.|.|++|+|||||+..++...
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (198)
T TIGR01189        23 LNAGEALQVTGPNGIGKTTLLRILAGLL   50 (198)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999998877653

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.51  E-value=5.9e-07  Score=79.03  Aligned_cols=45  Identities=9%  Similarity=0.145  Sum_probs=33.4

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++.+.++.     ..+.    .+...|+++.++.+.|||++.|-..
T Consensus       147 ~p~iLLlDEP~saLD~-----~~r~----~l~~~l~~l~~~~~~Tii~vTHd~~  191 (363)
T TIGR01186       147 EPDILLMDEAFSALDP-----LIRD----SMQDELKKLQATLQKTIVFITHDLD  191 (363)
T ss_pred             CCCEEEEeCCcccCCH-----HHHH----HHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            7899999999976633     2222    5666777777778999888888764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.50  E-value=9e-07  Score=71.56  Aligned_cols=28  Identities=29%  Similarity=0.277  Sum_probs=25.4

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+.-++...
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (202)
T cd03233          30 VKPGEMVLVLGRPGSGCSTLLKALANRT   57 (202)
T ss_pred             ECCCcEEEEECCCCCCHHHHHHHhcccC
Confidence            7899999999999999999998877654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=6.2e-07  Score=84.27  Aligned_cols=127  Identities=17%  Similarity=0.116  Sum_probs=87.2

Q ss_pred             hhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH-----HHHHHHHHHHhhCCC
Q 036464           66 ILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS-----AVINYLDKFVSEHKD  140 (226)
Q Consensus        66 ~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~-----~~l~~l~~~l~~~~~  140 (226)
                      -+|--+|+|  ++|+||||||||.||..+|...-.         +.+.+++.  ++.|..     ..++++-...+.+ .
T Consensus       338 ~lGAKiPkG--vLL~GPPGTGKTLLAKAiAGEAgV---------PF~svSGS--EFvE~~~g~~asrvr~lf~~ar~~-a  403 (774)
T KOG0731|consen  338 ELGAKIPKG--VLLVGPPGTGKTLLAKAIAGEAGV---------PFFSVSGS--EFVEMFVGVGASRVRDLFPLARKN-A  403 (774)
T ss_pred             HcCCcCcCc--eEEECCCCCcHHHHHHHHhcccCC---------ceeeechH--HHHHHhcccchHHHHHHHHHhhcc-C
Confidence            445568888  889999999999999999987643         34444433  455443     3345555555554 7


Q ss_pred             ceEEEEcCCchhhhcCc-----CChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCCCCcCCcCC
Q 036464          141 VKVVIIDSIAFHFRHGF-----VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAESCLTCLRD  206 (226)
Q Consensus       141 ~~lvVIDsl~~l~~~~~-----~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~~~~~~~~  206 (226)
                      |.+|+||+|.++-+...     ....+|.+-+++++-.+..+....++.|+......+..+..-..|.-.|
T Consensus       404 P~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfd  474 (774)
T KOG0731|consen  404 PSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFD  474 (774)
T ss_pred             CeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccc
Confidence            89999999998766542     2345788889999999998877766777766655555555444443333

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.50  E-value=1.7e-06  Score=73.70  Aligned_cols=45  Identities=18%  Similarity=0.282  Sum_probs=33.5

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++-++.     ..+    .++...|++++++.+.+||++.|-..
T Consensus       162 ~P~llllDEPt~gLD~-----~~~----~~l~~~l~~l~~~~g~tvi~vtHd~~  206 (287)
T PRK13637        162 EPKILILDEPTAGLDP-----KGR----DEILNKIKELHKEYNMTIILVSHSME  206 (287)
T ss_pred             CCCEEEEECCccCCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            6899999999976633     122    25667777887778999998887754

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=98.50  E-value=2.7e-06  Score=66.38  Aligned_cols=110  Identities=13%  Similarity=0.049  Sum_probs=63.8

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhcccc------ccCCCCCeEEEEeccc-----cCchHHHHHHHHHHHHHhhCC--
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPV------EFGGLGGKAIYIGKCL-----GFYTEQSAVINYLDKFVSEHK--  139 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~------~~~~~~~~vlyi~~e~-----~~~~~~~~~l~~l~~~l~~~~--  139 (226)
                      .+.+++|+||+|+|||+++..++.....-.      +..+.+..+-+.+.+.     ..+..+ .....+...+...+  
T Consensus        20 ~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~G~-~~~~~la~~L~~~~~~   98 (162)
T cd03227          20 EGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSGGE-KELSALALILALASLK   98 (162)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccccH-HHHHHHHHHHHhcCCC
Confidence            347999999999999999999877665311      0000122222222110     011111 22334444554432  


Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++..-...     ..+.    .+...+.++..+ +.++|++.|-..
T Consensus        99 ~~~llllDEp~~gld~-----~~~~----~l~~~l~~~~~~-~~~vii~TH~~~  142 (162)
T cd03227          99 PRPLYILDEIDRGLDP-----RDGQ----ALAEAILEHLVK-GAQVIVITHLPE  142 (162)
T ss_pred             CCCEEEEeCCCCCCCH-----HHHH----HHHHHHHHHHhc-CCEEEEEcCCHH
Confidence            7899999999865432     2222    455666666666 889999888654

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=98.50  E-value=9.1e-07  Score=72.36  Aligned_cols=45  Identities=13%  Similarity=0.113  Sum_probs=33.5

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++.++.     ..+    ..+...|+++.++.+.+||++.|-..
T Consensus       159 ~p~illlDEP~~~LD~-----~~~----~~l~~~l~~~~~~~~~tii~~sh~~~  203 (220)
T TIGR02982       159 RPKLVLADEPTAALDS-----KSG----RDVVELMQKLAREQGCTILIVTHDNR  203 (220)
T ss_pred             CCCEEEEeCCCCcCCH-----HHH----HHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            7899999999976633     122    25667777777777899999888754

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.50  E-value=1.8e-06  Score=71.25  Aligned_cols=28  Identities=25%  Similarity=0.211  Sum_probs=25.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+..++...
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219          23 VRPGEIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            7899999999999999999998887643

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=98.50  E-value=7.6e-07  Score=78.18  Aligned_cols=45  Identities=13%  Similarity=0.186  Sum_probs=33.7

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++.++.     ..+    ..+...|++++++.+.+||++.|-..
T Consensus       149 ~p~lllLDEPts~LD~-----~~~----~~l~~~L~~l~~~~g~tiiivtH~~~  193 (354)
T TIGR02142       149 SPRLLLMDEPLAALDD-----PRK----YEILPYLERLHAEFGIPILYVSHSLQ  193 (354)
T ss_pred             CCCEEEEcCCCcCCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEecCHH
Confidence            6899999999976633     222    25667788888888999888888654

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.49  E-value=8.8e-07  Score=71.92  Aligned_cols=29  Identities=28%  Similarity=0.200  Sum_probs=25.7

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.|++|+|||||+.-++...
T Consensus        22 ~i~~G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262          22 TVKKGEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999998887654

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=98.49  E-value=2e-06  Score=69.37  Aligned_cols=112  Identities=13%  Similarity=0.085  Sum_probs=59.8

Q ss_pred             CCCC-eeEEEecCCCCChHHHHHHHHHHhcccccc----CCCCCeEEEEeccccC--chHHH--------HHHHHHHHHH
Q 036464           71 IGCR-EVTEIGGVPGIGKTQLGIQLAVNVQIPVEF----GGLGGKAIYIGKCLGF--YTEQS--------AVINYLDKFV  135 (226)
Q Consensus        71 i~~G-~i~~i~G~~GsGKT~l~~~la~~~~lp~~~----~~~~~~vlyi~~e~~~--~~~~~--------~~l~~l~~~l  135 (226)
                      +..| +++.|+||+|+|||||+..++....++...    ......+-|++.....  ..+.+        .-..++..++
T Consensus        24 i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~~lg~~~~l~~~~s~fs~g~~~~~~i~  103 (200)
T cd03280          24 LGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFADIGDEQSIEQSLSTFSSHMKNIARIL  103 (200)
T ss_pred             ECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEEecCchhhhhcCcchHHHHHHHHHHHH
Confidence            3445 589999999999999999988433221110    0011123344422100  00000        1122333333


Q ss_pred             hhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHH-HHHHHHHHcCCEEEEecccc
Q 036464          136 SEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIAL-KLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       136 ~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~-~L~~la~~~~~~vi~~nq~~  192 (226)
                      ....+++++++|++.+-...     ..+.    .+.. .++.+ .+.+.++|+++|..
T Consensus       104 ~~~~~p~llllDEp~~glD~-----~~~~----~i~~~~l~~l-~~~~~~vi~~tH~~  151 (200)
T cd03280         104 QHADPDSLVLLDELGSGTDP-----VEGA----ALAIAILEEL-LERGALVIATTHYG  151 (200)
T ss_pred             HhCCCCcEEEEcCCCCCCCH-----HHHH----HHHHHHHHHH-HhcCCEEEEECCHH
Confidence            33457899999999965432     2222    2322 23333 34588999999864

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.49  E-value=6.9e-07  Score=79.55  Aligned_cols=45  Identities=11%  Similarity=0.175  Sum_probs=33.1

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++-++.     ..+    ..+...|+++.++.+.+||++.|-..
T Consensus       182 ~P~iLLLDEPts~LD~-----~~r----~~l~~~L~~l~~~~g~TIIivTHd~~  226 (400)
T PRK10070        182 NPDILLMDEAFSALDP-----LIR----TEMQDELVKLQAKHQRTIVFISHDLD  226 (400)
T ss_pred             CCCEEEEECCCccCCH-----HHH----HHHHHHHHHHHHHCCCeEEEEECCHH
Confidence            7899999999976633     122    25666777777778999888888653

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.49  E-value=6.2e-07  Score=81.62  Aligned_cols=47  Identities=17%  Similarity=0.169  Sum_probs=37.9

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN  195 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~  195 (226)
                      +|++||.|+..+.++..         ...++++.|+++-+++|++.++++|=-..+
T Consensus       447 ~P~lli~DEp~SaLDvs---------vqa~VlnLl~~lq~e~g~t~lfISHDl~vV  493 (539)
T COG1123         447 EPKLLILDEPVSALDVS---------VQAQVLNLLKDLQEELGLTYLFISHDLAVV  493 (539)
T ss_pred             CCCEEEecCCccccCHH---------HHHHHHHHHHHHHHHhCCEEEEEeCCHHHH
Confidence            69999999999876432         234788899999999999999999965433

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=98.49  E-value=8.2e-07  Score=77.22  Aligned_cols=45  Identities=18%  Similarity=0.206  Sum_probs=34.3

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++|.|++++.++.     ..+    .+++..|+++.++++.++|++.|-..
T Consensus       179 ~P~llilDEPts~LD~-----~~~----~~i~~lL~~l~~~~g~til~iTHdl~  223 (330)
T PRK09473        179 RPKLLIADEPTTALDV-----TVQ----AQIMTLLNELKREFNTAIIMITHDLG  223 (330)
T ss_pred             CCCEEEEeCCCccCCH-----HHH----HHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            6899999999976633     122    26677888888888999998887653

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=98.49  E-value=9.5e-07  Score=70.08  Aligned_cols=45  Identities=18%  Similarity=0.088  Sum_probs=35.0

Q ss_pred             CceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        54 ~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +.++.|-+.|+.+-- -+++|+++-++||+|+|||||+.-+.....
T Consensus         9 k~Y~~g~~aL~~vs~-~i~~Gef~fl~GpSGAGKSTllkLi~~~e~   53 (223)
T COG2884           9 KAYPGGREALRDVSF-HIPKGEFVFLTGPSGAGKSTLLKLIYGEER   53 (223)
T ss_pred             hhcCCCchhhhCceE-eecCceEEEEECCCCCCHHHHHHHHHhhhc
Confidence            455666556766532 489999999999999999999987776653

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.48  E-value=9.3e-07  Score=73.21  Aligned_cols=29  Identities=31%  Similarity=0.205  Sum_probs=25.8

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+.+|+++.|.|++|+|||||+..++...
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (240)
T PRK09493         23 NIDQGEVVVIIGPSGSGKSTLLRCINKLE   51 (240)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999998888654

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=98.48  E-value=2.4e-06  Score=68.48  Aligned_cols=39  Identities=26%  Similarity=0.193  Sum_probs=32.8

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK  116 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~  116 (226)
                      .+.|+++.|.|++|+||||++.-++.-..       +..++++|+.
T Consensus        25 ae~Gei~GlLG~NGAGKTT~LRmiatlL~-------P~~G~v~idg   63 (245)
T COG4555          25 AEEGEITGLLGENGAGKTTLLRMIATLLI-------PDSGKVTIDG   63 (245)
T ss_pred             eccceEEEEEcCCCCCchhHHHHHHHhcc-------CCCceEEEee
Confidence            68899999999999999999988776653       5567788884

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.48  E-value=1e-06  Score=72.20  Aligned_cols=28  Identities=21%  Similarity=0.179  Sum_probs=25.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+|+++.|.|++|+|||||+.-++...
T Consensus        23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (223)
T TIGR03740        23 VPKNSVYGLLGPNGAGKSTLLKMITGIL   50 (223)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999998877643

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.48  E-value=9.1e-07  Score=74.51  Aligned_cols=46  Identities=20%  Similarity=0.148  Sum_probs=34.0

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      +++++++|++++-++..     .    ...+.+.|+++.++++.+||++.|-...
T Consensus       168 ~p~illLDEPt~~LD~~-----~----~~~l~~~l~~~~~~~g~tiiivsH~~~~  213 (265)
T TIGR02769       168 KPKLIVLDEAVSNLDMV-----L----QAVILELLRKLQQAFGTAYLFITHDLRL  213 (265)
T ss_pred             CCCEEEEeCCcccCCHH-----H----HHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence            78999999999765331     1    2256677778877778999998887643

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.48  E-value=9.5e-07  Score=72.41  Aligned_cols=45  Identities=20%  Similarity=0.184  Sum_probs=33.3

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++-++.     ..+    ..+.+.|++++++.+.+||++.|-..
T Consensus       163 ~p~lllLDEPt~~LD~-----~~~----~~l~~~l~~~~~~~~~tii~~sH~~~  207 (228)
T cd03257         163 NPKLLIADEPTSALDV-----SVQ----AQILDLLKKLQEELGLTLLFITHDLG  207 (228)
T ss_pred             CCCEEEecCCCCCCCH-----HHH----HHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            6899999999976532     122    25667777888777889998888654

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.47  E-value=1e-06  Score=71.56  Aligned_cols=29  Identities=24%  Similarity=0.181  Sum_probs=25.5

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.|++|+|||||+..++...
T Consensus        21 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235          21 EVKPGEFLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            37899999999999999999998877643

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.47  E-value=1.8e-06  Score=76.90  Aligned_cols=29  Identities=21%  Similarity=0.228  Sum_probs=25.8

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.||+|+|||||+..++...
T Consensus        25 ~i~~Geiv~liGpNGaGKSTLLk~LaGll   53 (402)
T PRK09536         25 SVREGSLVGLVGPNGAGKTTLLRAINGTL   53 (402)
T ss_pred             EECCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            37899999999999999999999887654

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=98.47  E-value=8.5e-07  Score=73.19  Aligned_cols=29  Identities=24%  Similarity=0.142  Sum_probs=25.9

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.|++|+|||||+..++...
T Consensus        23 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~   51 (236)
T cd03253          23 TIPAGKKVAIVGPSGSGKSTILRLLFRFY   51 (236)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            37899999999999999999999887654

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=98.47  E-value=1.1e-06  Score=76.41  Aligned_cols=45  Identities=20%  Similarity=0.203  Sum_probs=34.4

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++|.|++++.++.     ..+    .++++.|+++.++.+.++|+++|-..
T Consensus       171 ~P~llilDEPts~LD~-----~~~----~~il~lL~~l~~~~g~til~iTHdl~  215 (326)
T PRK11022        171 RPKLLIADEPTTALDV-----TIQ----AQIIELLLELQQKENMALVLITHDLA  215 (326)
T ss_pred             CCCEEEEeCCCCCCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            7899999999976643     122    26777888888888999998887653

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.47  E-value=1.1e-06  Score=74.05  Aligned_cols=28  Identities=21%  Similarity=0.272  Sum_probs=25.5

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+..++...
T Consensus        47 i~~Ge~~~liG~NGsGKSTLlk~L~Gl~   74 (264)
T PRK13546         47 AYEGDVIGLVGINGSGKSTLSNIIGGSL   74 (264)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            7899999999999999999998887654

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.47  E-value=2.2e-06  Score=72.62  Aligned_cols=28  Identities=32%  Similarity=0.329  Sum_probs=25.5

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+..++...
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (274)
T PRK13644         25 IKKGEYIGIIGKNGSGKSTLALHLNGLL   52 (274)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999999998887653

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.46  E-value=9.4e-07  Score=74.66  Aligned_cols=29  Identities=28%  Similarity=0.336  Sum_probs=25.3

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+.+|+++.|.|++|+|||||+.-++...
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (271)
T PRK13638         23 DFSLSPVTGLVGANGCGKSTLFMNLSGLL   51 (271)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            37899999999999999999998777543

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=98.46  E-value=1e-06  Score=74.18  Aligned_cols=28  Identities=32%  Similarity=0.243  Sum_probs=25.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+|+++.|.|++|+|||||+.-++...
T Consensus        30 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   57 (265)
T PRK10253         30 IPDGHFTAIIGPNGCGKSTLLRTLSRLM   57 (265)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            7899999999999999999998877654

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=98.46  E-value=1.1e-06  Score=80.47  Aligned_cols=113  Identities=16%  Similarity=0.116  Sum_probs=68.6

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHH-----HHHHHHHHHHHhhCCCceEE
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-----SAVINYLDKFVSEHKDVKVV  144 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~-----~~~l~~l~~~l~~~~~~~lv  144 (226)
                      ..++|  ++|+||||+|||+++..+|...-         .+.++++..  .+.+.     ...+..+-+.... ..+.+|
T Consensus        86 ~~~~g--iLL~GppGtGKT~la~alA~~~~---------~~~~~i~~~--~~~~~~~g~~~~~l~~~f~~a~~-~~p~Il  151 (495)
T TIGR01241        86 KIPKG--VLLVGPPGTGKTLLAKAVAGEAG---------VPFFSISGS--DFVEMFVGVGASRVRDLFEQAKK-NAPCII  151 (495)
T ss_pred             CCCCc--EEEECCCCCCHHHHHHHHHHHcC---------CCeeeccHH--HHHHHHhcccHHHHHHHHHHHHh-cCCCEE
Confidence            34444  89999999999999999987753         346666643  11111     1122222222223 367899


Q ss_pred             EEcCCchhhhcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464          145 IIDSIAFHFRHGFV----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL  196 (226)
Q Consensus       145 VIDsl~~l~~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~  196 (226)
                      +||++..+......    ....+.+.++.++..+..+....++.||.+.+....++
T Consensus       152 ~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld  207 (495)
T TIGR01241       152 FIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLD  207 (495)
T ss_pred             EEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcC
Confidence            99999987654321    12334456667777776666666777776655544444

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.45  E-value=1.5e-06  Score=69.74  Aligned_cols=28  Identities=29%  Similarity=0.226  Sum_probs=25.3

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+.-++...
T Consensus        23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (195)
T PRK13541         23 FLPSAITYIKGANGCGKSSLLRMIAGIM   50 (195)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999999998887653

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.45  E-value=6.6e-07  Score=73.43  Aligned_cols=47  Identities=13%  Similarity=0.094  Sum_probs=37.6

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN  195 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~  195 (226)
                      +|+++++|++.+-+..         .+..++...++++.++.+++|+++-|-.+-+
T Consensus       167 ~P~lLLLDEPaAGln~---------~e~~~l~~~i~~i~~~~g~tillIEHdM~~V  213 (250)
T COG0411         167 QPKLLLLDEPAAGLNP---------EETEELAELIRELRDRGGVTILLIEHDMKLV  213 (250)
T ss_pred             CCCEEEecCccCCCCH---------HHHHHHHHHHHHHHhcCCcEEEEEEeccHHH
Confidence            7999999999976533         2344778888888888999999999987644

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=98.45  E-value=1.6e-06  Score=77.83  Aligned_cols=117  Identities=16%  Similarity=0.120  Sum_probs=70.5

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-c-Cc-hHHHHHHHHHHHHHhhCCCceEEEE
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-G-FY-TEQSAVINYLDKFVSEHKDVKVVII  146 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-~-~~-~~~~~~l~~l~~~l~~~~~~~lvVI  146 (226)
                      |+.++.-++|+||||+|||+++..++....         ...+.++... . .+ .+....+..+-...... .+.+|+|
T Consensus       213 gi~~p~gVLL~GPPGTGKT~LAraIA~el~---------~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~~-~P~ILfI  282 (438)
T PTZ00361        213 GIKPPKGVILYGPPGTGKTLLAKAVANETS---------ATFLRVVGSELIQKYLGDGPKLVRELFRVAEEN-APSIVFI  282 (438)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHhhC---------CCEEEEecchhhhhhcchHHHHHHHHHHHHHhC-CCcEEeH
Confidence            677788899999999999999999998764         1233343221 0 01 11112233333333333 6889999


Q ss_pred             cCCchhhhcCcCC----hHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464          147 DSIAFHFRHGFVD----LALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL  196 (226)
Q Consensus       147 Dsl~~l~~~~~~~----~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~  196 (226)
                      |++.++.......    ...-++.+.+++..+..+....++.||++.+-...++
T Consensus       283 DEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LD  336 (438)
T PTZ00361        283 DEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLD  336 (438)
T ss_pred             HHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhh
Confidence            9999877543221    1122344556666666665667888887776544443

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.45  E-value=1.2e-06  Score=71.36  Aligned_cols=29  Identities=31%  Similarity=0.249  Sum_probs=25.8

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+.+|+++.|.|++|+|||||+..++...
T Consensus        33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   61 (214)
T PRK13543         33 HVDAGEALLVQGDNGAGKTTLLRVLAGLL   61 (214)
T ss_pred             EECCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999998887654

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=98.44  E-value=1.2e-06  Score=81.72  Aligned_cols=29  Identities=21%  Similarity=0.254  Sum_probs=26.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +++|+.+.|+|++|+|||||+.-++....
T Consensus       366 i~~G~~~aIvG~sGsGKSTLl~ll~gl~~  394 (582)
T PRK11176        366 IPAGKTVALVGRSGSGKSTIANLLTRFYD  394 (582)
T ss_pred             eCCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence            68999999999999999999988877653

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.44  E-value=1.3e-06  Score=74.46  Aligned_cols=45  Identities=9%  Similarity=0.058  Sum_probs=33.4

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++.++..     .+    ..+.+.|++++++.+.+||+++|-..
T Consensus       168 ~p~lLlLDEPt~~LD~~-----~~----~~l~~~l~~~~~~~~~tiiiisH~~~  212 (289)
T PRK13645        168 DGNTLVLDEPTGGLDPK-----GE----EDFINLFERLNKEYKKRIIMVTHNMD  212 (289)
T ss_pred             CCCEEEEeCCcccCCHH-----HH----HHHHHHHHHHHHhcCCEEEEEecCHH
Confidence            68999999999766431     22    25666777777777999999888654

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=98.44  E-value=3.7e-06  Score=69.23  Aligned_cols=46  Identities=13%  Similarity=0.094  Sum_probs=33.7

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      +++++++|++++-++.     ..+    ..+.+.|++++++.+.+||++.|-...
T Consensus       143 ~p~vllLDEPt~~LD~-----~~~----~~l~~~l~~~~~~~~~tiii~sH~~~~  188 (230)
T TIGR02770       143 EPPFLIADEPTTDLDV-----VNQ----ARVLKLLRELRQLFGTGILLITHDLGV  188 (230)
T ss_pred             CCCEEEEcCCccccCH-----HHH----HHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence            6899999999976532     122    256677777777778999998887643

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=98.44  E-value=2.2e-06  Score=77.57  Aligned_cols=40  Identities=25%  Similarity=0.194  Sum_probs=31.4

Q ss_pred             CchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           59 SCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        59 g~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      |++.||.+=- -+.+|++..|.|++|+|||||+.-++-.+.
T Consensus        20 gV~AL~~v~l-~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~   59 (500)
T COG1129          20 GVKALDGVSL-TVRPGEVHALLGENGAGKSTLMKILSGVYP   59 (500)
T ss_pred             Cceeecccee-EEeCceEEEEecCCCCCHHHHHHHHhCccc
Confidence            4555554321 389999999999999999999988887664

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.43  E-value=2.6e-06  Score=72.22  Aligned_cols=44  Identities=14%  Similarity=0.130  Sum_probs=32.8

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      .|+++.+|++-..++.         +...++-+.|+++.+++++++++++|=.
T Consensus       155 eP~vLLLDEPf~ALDa---------~vr~~lr~wLr~~~~~~~~ttvfVTHD~  198 (345)
T COG1118         155 EPKVLLLDEPFGALDA---------KVRKELRRWLRKLHDRLGVTTVFVTHDQ  198 (345)
T ss_pred             CCCeEeecCCchhhhH---------HHHHHHHHHHHHHHHhhCceEEEEeCCH
Confidence            6899999999865533         2223555678888889999999988854

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=98.43  E-value=1.8e-06  Score=76.75  Aligned_cols=117  Identities=16%  Similarity=0.114  Sum_probs=64.9

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc--Cc-hHHHHHHHHHHHHHhhCCCceEEEE
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--FY-TEQSAVINYLDKFVSEHKDVKVVII  146 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--~~-~~~~~~l~~l~~~l~~~~~~~lvVI  146 (226)
                      |+.+-.-++|+||||+|||+++..++....         ...+.++....  .+ .+....+..+-+..... .+.+|+|
T Consensus       161 g~~~p~gvLL~GppGtGKT~lAkaia~~~~---------~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~-~p~Ilfi  230 (389)
T PRK03992        161 GIEPPKGVLLYGPPGTGKTLLAKAVAHETN---------ATFIRVVGSELVQKFIGEGARLVRELFELAREK-APSIIFI  230 (389)
T ss_pred             CCCCCCceEEECCCCCChHHHHHHHHHHhC---------CCEEEeehHHHhHhhccchHHHHHHHHHHHHhc-CCeEEEE
Confidence            455555689999999999999999988753         24555553210  00 11112233333333333 6789999


Q ss_pred             cCCchhhhcCcCC----hHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464          147 DSIAFHFRHGFVD----LALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL  196 (226)
Q Consensus       147 Dsl~~l~~~~~~~----~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~  196 (226)
                      |++..+.......    ...-++.+.+++..+..+....++.||.+.+....++
T Consensus       231 DEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld  284 (389)
T PRK03992        231 DEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILD  284 (389)
T ss_pred             echhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCC
Confidence            9999886443221    1122223334443333333345677776655444444

>PHA00729 NTP-binding motif containing protein

Probab=98.43  E-value=1e-06  Score=72.21  Aligned_cols=79  Identities=14%  Similarity=0.200  Sum_probs=51.3

Q ss_pred             HHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc--c-----ccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHh
Q 036464           64 DNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ--I-----PVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVS  136 (226)
Q Consensus        64 D~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~--l-----p~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~  136 (226)
                      +.+-.+++.   .+.|+|+||+|||++|..++..+.  +     +......+.+++|++.+        .++..+.....
T Consensus        10 ~~l~~~~f~---nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~--------~Ll~~L~~a~~   78 (226)
T PHA00729         10 SAYNNNGFV---SAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELP--------DALEKIQDAID   78 (226)
T ss_pred             HHHhcCCeE---EEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHH--------HHHHHHHHHHh
Confidence            344455663   689999999999999999988752  1     00111345678888743        13344444444


Q ss_pred             hCCCceEEEEcCCchhh
Q 036464          137 EHKDVKVVIIDSIAFHF  153 (226)
Q Consensus       137 ~~~~~~lvVIDsl~~l~  153 (226)
                      ...+++++|||++....
T Consensus        79 ~~~~~dlLIIDd~G~~~   95 (226)
T PHA00729         79 NDYRIPLIIFDDAGIWL   95 (226)
T ss_pred             cCCCCCEEEEeCCchhh
Confidence            44457899999987544

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=1.5e-06  Score=79.35  Aligned_cols=120  Identities=18%  Similarity=0.142  Sum_probs=80.2

Q ss_pred             hHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH--------HHHHHHHH
Q 036464           62 DLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS--------AVINYLDK  133 (226)
Q Consensus        62 ~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~--------~~l~~l~~  133 (226)
                      .+=+.+|=-.|.|  ++++||||+|||.||..+|...           +.=||+-.   -+|.+        ..+.++-+
T Consensus       535 d~~k~lGi~~PsG--vLL~GPPGCGKTLlAKAVANEa-----------g~NFisVK---GPELlNkYVGESErAVR~vFq  598 (802)
T KOG0733|consen  535 DLFKALGIDAPSG--VLLCGPPGCGKTLLAKAVANEA-----------GANFISVK---GPELLNKYVGESERAVRQVFQ  598 (802)
T ss_pred             HHHHHhCCCCCCc--eEEeCCCCccHHHHHHHHhhhc-----------cCceEeec---CHHHHHHHhhhHHHHHHHHHH
Confidence            3444553233444  8999999999999999888765           34455521   12222        12333333


Q ss_pred             HHhhCCCceEEEEcCCchhhhcCcC-ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCC
Q 036464          134 FVSEHKDVKVVIIDSIAFHFRHGFV-DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAE  198 (226)
Q Consensus       134 ~l~~~~~~~lvVIDsl~~l~~~~~~-~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~  198 (226)
                      -.+. ..|.+|++|++.++...... ......+.+++++..|.-+-.+.|+.||....--..++..
T Consensus       599 RAR~-saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpA  663 (802)
T KOG0733|consen  599 RARA-SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPA  663 (802)
T ss_pred             Hhhc-CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchh
Confidence            3333 47999999999988754333 2344567799999999999999999999877666666654

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.43  E-value=9.4e-07  Score=73.73  Aligned_cols=50  Identities=12%  Similarity=0.048  Sum_probs=37.7

Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA  197 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~  197 (226)
                      ++++++++|+++--++.     ..+.    .+.+.|+.+..++++||++|+|.-.++..
T Consensus       173 h~p~VLfLDEpTvgLDV-----~aq~----~ir~Flke~n~~~~aTVllTTH~~~di~~  222 (325)
T COG4586         173 HPPKVLFLDEPTVGLDV-----NAQA----NIREFLKEYNEERQATVLLTTHIFDDIAT  222 (325)
T ss_pred             CCCcEEEecCCccCcch-----hHHH----HHHHHHHHHHHhhCceEEEEecchhhHHH
Confidence            48999999999943322     2222    56677888999999999999998766543

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.43  E-value=1.3e-06  Score=72.15  Aligned_cols=29  Identities=31%  Similarity=0.290  Sum_probs=25.4

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+.+|+++.|.|++|+|||||+..++...
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (237)
T PRK11614         27 HINQGEIVTLIGANGAGKTTLLGTLCGDP   55 (237)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            37899999999999999999998776543

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.43  E-value=1.3e-06  Score=74.01  Aligned_cols=29  Identities=21%  Similarity=0.212  Sum_probs=25.6

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+.+|+++.|.|++|+|||||+.-++...
T Consensus        24 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~   52 (275)
T PRK13639         24 KAEKGEMVALLGPNGAGKSTLFLHFNGIL   52 (275)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            38899999999999999999998887543

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.42  E-value=9.6e-07  Score=81.35  Aligned_cols=28  Identities=29%  Similarity=0.242  Sum_probs=25.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+.+.|+||+|+|||||+.-++..+
T Consensus       358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~  385 (529)
T TIGR02868       358 LPPGERVAILGPSGSGKSTLLMLLTGLL  385 (529)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999999998777654

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=98.42  E-value=4.2e-06  Score=68.09  Aligned_cols=45  Identities=11%  Similarity=0.172  Sum_probs=33.4

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++-++.     ..    ...+.+.|++++++++.+||++.|-..
T Consensus       149 ~p~llllDEPt~~LD~-----~~----~~~l~~~l~~~~~~~~~tiii~sH~~~  193 (214)
T cd03297         149 QPELLLLDEPFSALDR-----AL----RLQLLPELKQIKKNLNIPVIFVTHDLS  193 (214)
T ss_pred             CCCEEEEcCCcccCCH-----HH----HHHHHHHHHHHHHHcCcEEEEEecCHH
Confidence            7899999999976533     12    225667777887777889888888664

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=98.42  E-value=7.4e-07  Score=82.55  Aligned_cols=101  Identities=17%  Similarity=0.172  Sum_probs=61.1

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH-HHH--HHHHHHHhhCCCceEEEEcCCchh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS-AVI--NYLDKFVSEHKDVKVVIIDSIAFH  152 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~-~~l--~~l~~~l~~~~~~~lvVIDsl~~l  152 (226)
                      -+.|+|++|+|||+|+..++..+..    ...+.+|+|++.+  .+...+ ..+  ..+..+.+...++++||||++..+
T Consensus       316 pL~LyG~sGsGKTHLL~AIa~~a~~----~~~g~~V~Yitae--ef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l  389 (617)
T PRK14086        316 PLFIYGESGLGKTHLLHAIGHYARR----LYPGTRVRYVSSE--EFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFL  389 (617)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHH----hCCCCeEEEeeHH--HHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccc
Confidence            4789999999999999999988751    1246899999976  232222 111  122333344446899999999965


Q ss_pred             hhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464          153 FRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA  191 (226)
Q Consensus       153 ~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~  191 (226)
                      ...+     ..+.   .++..+..+ .+.+..||++.+.
T Consensus       390 ~gke-----~tqe---eLF~l~N~l-~e~gk~IIITSd~  419 (617)
T PRK14086        390 EDKE-----STQE---EFFHTFNTL-HNANKQIVLSSDR  419 (617)
T ss_pred             cCCH-----HHHH---HHHHHHHHH-HhcCCCEEEecCC
Confidence            3221     1222   344444443 3455556665554

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=98.42  E-value=2.5e-06  Score=77.20  Aligned_cols=101  Identities=18%  Similarity=0.111  Sum_probs=61.6

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH----HH-HHHHHHHHhhCCCceEEEEcCCc
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS----AV-INYLDKFVSEHKDVKVVIIDSIA  150 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~----~~-l~~l~~~l~~~~~~~lvVIDsl~  150 (226)
                      -..|+|++|+|||+|+..++..+..    ...+.+|+|++.+  .+...+    .. .+.++++.+....++++|||+++
T Consensus       143 pl~i~G~~G~GKTHLl~Ai~~~l~~----~~~~~~v~yv~~~--~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq  216 (450)
T PRK14087        143 PLFIYGESGMGKTHLLKAAKNYIES----NFSDLKVSYMSGD--EFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQ  216 (450)
T ss_pred             ceEEECCCCCcHHHHHHHHHHHHHH----hCCCCeEEEEEHH--HHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccc
Confidence            3789999999999999888876541    1356899999976  332222    11 12345555555578999999998


Q ss_pred             hhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464          151 FHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA  191 (226)
Q Consensus       151 ~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~  191 (226)
                      .+-..     ...+.   .+...+..+ .+.+..+|++.+.
T Consensus       217 ~l~~k-----~~~~e---~lf~l~N~~-~~~~k~iIltsd~  248 (450)
T PRK14087        217 FLSYK-----EKTNE---IFFTIFNNF-IENDKQLFFSSDK  248 (450)
T ss_pred             cccCC-----HHHHH---HHHHHHHHH-HHcCCcEEEECCC
Confidence            65311     11222   333333333 3455566776543

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=98.42  E-value=2.8e-06  Score=69.79  Aligned_cols=64  Identities=14%  Similarity=0.095  Sum_probs=46.9

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIA  150 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~  150 (226)
                      ...+..+.|+|++|+|||+|+..++....      ..+.+++|++..  ...+          .+....+.++||||++.
T Consensus        39 ~~~~~~~~l~G~~G~GKT~La~ai~~~~~------~~~~~~~~i~~~--~~~~----------~~~~~~~~~~liiDdi~  100 (227)
T PRK08903         39 PVADRFFYLWGEAGSGRSHLLQALVADAS------YGGRNARYLDAA--SPLL----------AFDFDPEAELYAVDDVE  100 (227)
T ss_pred             cCCCCeEEEECCCCCCHHHHHHHHHHHHH------hCCCcEEEEehH--HhHH----------HHhhcccCCEEEEeChh
Confidence            35567899999999999999999998875      467789999854  1111          11222357899999998


Q ss_pred             hh
Q 036464          151 FH  152 (226)
Q Consensus       151 ~l  152 (226)
                      .+
T Consensus       101 ~l  102 (227)
T PRK08903        101 RL  102 (227)
T ss_pred             hc
Confidence            54

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=98.42  E-value=1.7e-06  Score=72.38  Aligned_cols=45  Identities=16%  Similarity=0.138  Sum_probs=33.3

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++-++.     ..+    ..+...|++++++.+.+||+++|-..
T Consensus       158 ~p~lLlLDEPt~~LD~-----~~~----~~l~~~L~~~~~~~g~til~~sH~~~  202 (254)
T PRK10418        158 EAPFIIADEPTTDLDV-----VAQ----ARILDLLESIVQKRALGMLLVTHDMG  202 (254)
T ss_pred             CCCEEEEeCCCcccCH-----HHH----HHHHHHHHHHHHhcCcEEEEEecCHH
Confidence            6899999999976532     112    25667777888778899998888654

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.42  E-value=1.5e-06  Score=74.18  Aligned_cols=29  Identities=24%  Similarity=0.188  Sum_probs=25.9

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.|++|+|||||+..++...
T Consensus        28 ~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~   56 (288)
T PRK13643         28 EVKKGSYTALIGHTGSGKSTLLQHLNGLL   56 (288)
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            38899999999999999999998888654

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=98.42  E-value=1.7e-06  Score=73.05  Aligned_cols=45  Identities=22%  Similarity=0.248  Sum_probs=33.4

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++-++..     .    ...+.+.|++++++++.++|++.|-..
T Consensus       169 ~p~lllLDEPt~~LD~~-----~----~~~~~~~l~~~~~~~~~tiiivsH~~~  213 (268)
T PRK10419        169 EPKLLILDEAVSNLDLV-----L----QAGVIRLLKKLQQQFGTACLFITHDLR  213 (268)
T ss_pred             CCCEEEEeCCCcccCHH-----H----HHHHHHHHHHHHHHcCcEEEEEECCHH
Confidence            78999999999765331     1    225667777887778899888887754

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=98.42  E-value=2e-06  Score=70.26  Aligned_cols=67  Identities=16%  Similarity=0.184  Sum_probs=47.0

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCch
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAF  151 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~  151 (226)
                      ..+..+.|+|++|+|||+++..++....      ..+.+++|++..  +....      ....+....+.++||||++..
T Consensus        36 ~~~~~lll~G~~G~GKT~la~~~~~~~~------~~~~~~~~i~~~--~~~~~------~~~~~~~~~~~~lLvIDdi~~  101 (226)
T TIGR03420        36 KGDRFLYLWGESGSGKSHLLQAACAAAE------ERGKSAIYLPLA--ELAQA------DPEVLEGLEQADLVCLDDVEA  101 (226)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHH------hcCCcEEEEeHH--HHHHh------HHHHHhhcccCCEEEEeChhh
Confidence            3466799999999999999999998765      345689999854  11111      122233233568999999986


Q ss_pred             h
Q 036464          152 H  152 (226)
Q Consensus       152 l  152 (226)
                      +
T Consensus       102 l  102 (226)
T TIGR03420       102 I  102 (226)
T ss_pred             h
Confidence            4

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=98.41  E-value=1.6e-06  Score=71.81  Aligned_cols=28  Identities=25%  Similarity=0.239  Sum_probs=25.4

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+.-++...
T Consensus        26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   53 (241)
T PRK10895         26 VNSGEIVGLLGPNGAGKTTTFYMVVGIV   53 (241)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999998887654

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=98.41  E-value=1.8e-06  Score=77.94  Aligned_cols=72  Identities=25%  Similarity=0.308  Sum_probs=47.5

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH-HHH--HHHHHHHhhC-CCceEEEEcCCch
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS-AVI--NYLDKFVSEH-KDVKVVIIDSIAF  151 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~-~~l--~~l~~~l~~~-~~~~lvVIDsl~~  151 (226)
                      -..|+|++|+|||+|+..++..+..    ...+.+|+|++.+  .+...+ ..+  ..+.++.+.. .++++++||+++.
T Consensus       132 ~l~lyG~~G~GKTHLl~ai~~~l~~----~~~~~~v~yi~~~--~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~  205 (440)
T PRK14088        132 PLFIYGGVGLGKTHLLQSIGNYVVQ----NEPDLRVMYITSE--KFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQF  205 (440)
T ss_pred             eEEEEcCCCCcHHHHHHHHHHHHHH----hCCCCeEEEEEHH--HHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhh
Confidence            4899999999999999999988752    1235789999976  222221 111  1222333221 2589999999997


Q ss_pred             hh
Q 036464          152 HF  153 (226)
Q Consensus       152 l~  153 (226)
                      +.
T Consensus       206 l~  207 (440)
T PRK14088        206 LI  207 (440)
T ss_pred             hc
Confidence            64

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=98.41  E-value=1.6e-06  Score=71.62  Aligned_cols=28  Identities=32%  Similarity=0.268  Sum_probs=25.5

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+..++...
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (237)
T cd03252          25 IKPGEVVGIVGRSGSGKSTLTKLIQRFY   52 (237)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            7899999999999999999998887654

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=98.41  E-value=1.5e-06  Score=71.56  Aligned_cols=28  Identities=25%  Similarity=0.234  Sum_probs=25.3

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+.-++...
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (234)
T cd03251          25 IPAGETVALVGPSGSGKSTLVNLIPRFY   52 (234)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            7899999999999999999998877654

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13409 putative ATPase RIL; Provisional

Probab=98.41  E-value=3.2e-06  Score=78.93  Aligned_cols=112  Identities=22%  Similarity=0.257  Sum_probs=67.1

Q ss_pred             CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCC--CCeEEEEecccc-----CchHHH--------------HH
Q 036464           69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL--GGKAIYIGKCLG-----FYTEQS--------------AV  127 (226)
Q Consensus        69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~--~~~vlyi~~e~~-----~~~~~~--------------~~  127 (226)
                      .-+.+|+++.|.|++|+|||||+..++.... | +.|.-  ..++.|+..+..     ...+.+              ..
T Consensus       360 ~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~-p-~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~  437 (590)
T PRK13409        360 GEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK-P-DEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEI  437 (590)
T ss_pred             eEECCCCEEEEECCCCCCHHHHHHHHhCCCC-C-CceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHHHHHHH
Confidence            4579999999999999999999988876542 2 11100  013344432210     000000              00


Q ss_pred             HH-----------------------HHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCE
Q 036464          128 IN-----------------------YLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLA  184 (226)
Q Consensus       128 l~-----------------------~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~  184 (226)
                      +.                       .+...+  ..+++++++|++++.++.     ..+    ..+.+.|++++++.+.+
T Consensus       438 L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL--~~~p~llLLDEPt~~LD~-----~~~----~~l~~~l~~l~~~~g~t  506 (590)
T PRK13409        438 IKPLQLERLLDKNVKDLSGGELQRVAIAACL--SRDADLYLLDEPSAHLDV-----EQR----LAVAKAIRRIAEEREAT  506 (590)
T ss_pred             HHHCCCHHHHhCCcccCCHHHHHHHHHHHHH--hcCCCEEEEeCCccCCCH-----HHH----HHHHHHHHHHHHhCCCE
Confidence            00                       011111  237899999999987633     222    36677888888888888


Q ss_pred             EEEeccccc
Q 036464          185 LLEPNLATT  193 (226)
Q Consensus       185 vi~~nq~~~  193 (226)
                      ||++.|-..
T Consensus       507 viivsHD~~  515 (590)
T PRK13409        507 ALVVDHDIY  515 (590)
T ss_pred             EEEEeCCHH
Confidence            888888643

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=98.40  E-value=2e-06  Score=72.12  Aligned_cols=46  Identities=13%  Similarity=0.136  Sum_probs=33.6

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      +++++++|++++-++..     .    ...+.+.|++++++++.+||++.|-...
T Consensus       169 ~p~llllDEPt~~LD~~-----~----~~~l~~~l~~~~~~~~~tii~isH~~~~  214 (258)
T PRK11701        169 HPRLVFMDEPTGGLDVS-----V----QARLLDLLRGLVRELGLAVVIVTHDLAV  214 (258)
T ss_pred             CCCEEEEcCCcccCCHH-----H----HHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence            79999999999765331     1    2256667777777779999988886643

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.40  E-value=1.9e-06  Score=78.76  Aligned_cols=126  Identities=22%  Similarity=0.251  Sum_probs=71.8

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc-c--cCchHHHHHHHHHHHHHhhCCCceEEEE
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC-L--GFYTEQSAVINYLDKFVSEHKDVKVVII  146 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e-~--~~~~~~~~~l~~l~~~l~~~~~~~lvVI  146 (226)
                      |+.|-+=++|.||||+|||.||..+|.+...|         .+-|++. +  --+.+.-+.+..+-+-.... .|.+|+|
T Consensus       219 Gv~PprGvLlHGPPGCGKT~lA~AiAgel~vP---------f~~isApeivSGvSGESEkkiRelF~~A~~~-aPcivFi  288 (802)
T KOG0733|consen  219 GVRPPRGVLLHGPPGCGKTSLANAIAGELGVP---------FLSISAPEIVSGVSGESEKKIRELFDQAKSN-APCIVFI  288 (802)
T ss_pred             CCCCCCceeeeCCCCccHHHHHHHHhhhcCCc---------eEeecchhhhcccCcccHHHHHHHHHHHhcc-CCeEEEe
Confidence            67777779999999999999999999987643         3333321 0  00111111233333333333 6899999


Q ss_pred             cCCchhhhcCcCChHHH---HHHHHHHHHHHHHHHHH--cCCEEEEeccccccCCCCCCcCCcCCCCch
Q 036464          147 DSIAFHFRHGFVDLALR---TRVLSGIALKLMNLAKK--FSLALLEPNLATTANLAESCLTCLRDSGSR  210 (226)
Q Consensus       147 Dsl~~l~~~~~~~~~~r---~~~l~~~~~~L~~la~~--~~~~vi~~nq~~~~~~~~~~~~~~~~sg~~  210 (226)
                      |+|.++-... +. +.|   .+.+.+++..+..+..+  .|-.|+++.-+++   .....+.+|..|+.
T Consensus       289 DeIDAI~pkR-e~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnR---PDslDpaLRRaGRF  352 (802)
T KOG0733|consen  289 DEIDAITPKR-EE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNR---PDSLDPALRRAGRF  352 (802)
T ss_pred             ecccccccch-hh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCC---CcccCHHHhccccc
Confidence            9999865432 21 222   22344555555555443  3566777765554   22334445555553

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=98.40  E-value=1.3e-06  Score=82.70  Aligned_cols=39  Identities=26%  Similarity=0.129  Sum_probs=30.6

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      -+++|+.+.|+|++|||||||+.-+..-..       +..+-+++|
T Consensus       495 ~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~-------p~~G~I~~d  533 (709)
T COG2274         495 EIPPGEKVAIVGRSGSGKSTLLKLLLGLYK-------PQQGRILLD  533 (709)
T ss_pred             EeCCCCEEEEECCCCCCHHHHHHHHhcCCC-------CCCceEEEC
Confidence            489999999999999999999977666553       344455555

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.39  E-value=3.6e-06  Score=72.27  Aligned_cols=27  Identities=15%  Similarity=0.059  Sum_probs=24.7

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      +++|+++.|.||+|+|||||+..++..
T Consensus        25 i~~Gei~~l~G~NGaGKTTLl~~l~Gl   51 (301)
T TIGR03522        25 AQKGRIVGFLGPNGAGKSTTMKIITGY   51 (301)
T ss_pred             EeCCeEEEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999999877754

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.39  E-value=4.1e-06  Score=68.81  Aligned_cols=29  Identities=34%  Similarity=0.217  Sum_probs=25.9

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.||+|+|||||+..++...
T Consensus        25 ~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   53 (229)
T cd03254          25 SIKPGETVAIVGPTGAGKTTLINLLMRFY   53 (229)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            37899999999999999999998887654

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>CHL00195 ycf46 Ycf46; Provisional

Probab=98.39  E-value=4.5e-06  Score=76.10  Aligned_cols=75  Identities=16%  Similarity=0.142  Sum_probs=48.9

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-c--CchHHHHHHHHHHHHHhhCCCceEEEE
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-G--FYTEQSAVINYLDKFVSEHKDVKVVII  146 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-~--~~~~~~~~l~~l~~~l~~~~~~~lvVI  146 (226)
                      |++...-++++||||+|||.++..+|...-         .+.+.++... .  ...+.-..+..+-+..+.. .+.+|+|
T Consensus       255 gl~~pkGILL~GPpGTGKTllAkaiA~e~~---------~~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~-~P~IL~I  324 (489)
T CHL00195        255 GLPTPRGLLLVGIQGTGKSLTAKAIANDWQ---------LPLLRLDVGKLFGGIVGESESRMRQMIRIAEAL-SPCILWI  324 (489)
T ss_pred             CCCCCceEEEECCCCCcHHHHHHHHHHHhC---------CCEEEEEhHHhcccccChHHHHHHHHHHHHHhc-CCcEEEe
Confidence            566667799999999999999999988764         2455555321 0  0111112233333334443 7899999


Q ss_pred             cCCchhhh
Q 036464          147 DSIAFHFR  154 (226)
Q Consensus       147 Dsl~~l~~  154 (226)
                      |++..++.
T Consensus       325 DEID~~~~  332 (489)
T CHL00195        325 DEIDKAFS  332 (489)
T ss_pred             hhhhhhhc
Confidence            99998765

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=98.39  E-value=2e-06  Score=71.76  Aligned_cols=45  Identities=18%  Similarity=0.228  Sum_probs=33.4

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++-++..     .    ...+...|++++++.+.++|++.|-..
T Consensus       164 ~p~llllDEP~~~LD~~-----~----~~~l~~~l~~~~~~~~~tiiivsH~~~  208 (252)
T TIGR03005       164 RPKVMLFDEVTSALDPE-----L----VGEVLNVIRRLASEHDLTMLLVTHEMG  208 (252)
T ss_pred             CCCEEEEeCCcccCCHH-----H----HHHHHHHHHHHHHhcCcEEEEEeCCHH
Confidence            68999999999765331     1    225667778887777899998888754

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=98.39  E-value=1.4e-06  Score=83.16  Aligned_cols=29  Identities=21%  Similarity=0.184  Sum_probs=25.9

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +++|+.+.|+|++|+|||||+.-++....
T Consensus       502 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~  530 (710)
T TIGR03796       502 LQPGQRVALVGGSGSGKSTIAKLVAGLYQ  530 (710)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            78999999999999999999987776653

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=98.39  E-value=1.3e-06  Score=83.07  Aligned_cols=29  Identities=34%  Similarity=0.145  Sum_probs=25.7

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +++|+.+.|+|++|+|||||+.-++..+.
T Consensus       488 i~~G~~iaIvG~sGsGKSTLlklL~gl~~  516 (694)
T TIGR03375       488 IRPGEKVAIIGRIGSGKSTLLKLLLGLYQ  516 (694)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            78999999999999999999987776553

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=98.39  E-value=1.9e-06  Score=71.83  Aligned_cols=27  Identities=26%  Similarity=0.336  Sum_probs=24.6

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      +++|+++.|.|++|+|||||+..++..
T Consensus        19 i~~Gei~~l~G~nGsGKSTLl~~l~Gl   45 (248)
T PRK03695         19 VRAGEILHLVGPNGAGKSTLLARMAGL   45 (248)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            789999999999999999999887754

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=98.38  E-value=2.7e-06  Score=69.81  Aligned_cols=28  Identities=25%  Similarity=0.176  Sum_probs=25.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+|+++.|.|++|+|||||+.-++...
T Consensus         3 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   30 (223)
T TIGR03771         3 ADKGELLGLLGPNGAGKTTLLRAILGLI   30 (223)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            6789999999999999999998887654

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]

Probab=98.38  E-value=2.2e-06  Score=70.01  Aligned_cols=104  Identities=20%  Similarity=0.101  Sum_probs=65.3

Q ss_pred             CCCCee-EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc----c-CchHHH------HH------HHHHH
Q 036464           71 IGCREV-TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL----G-FYTEQS------AV------INYLD  132 (226)
Q Consensus        71 i~~G~i-~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~----~-~~~~~~------~~------l~~l~  132 (226)
                      ...|.+ ++|.|||++||||++..+|+..+-... +-.+.+|..||...    + .-..|.      ..      ..-+.
T Consensus       133 y~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~-~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmm  211 (308)
T COG3854         133 YQNGWLNTLIIGPPQVGKTTLLRDIARLLSDGIN-QFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMM  211 (308)
T ss_pred             HhcCceeeEEecCCCCChHHHHHHHHHHhhcccc-ccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHH
Confidence            356777 999999999999999999999873211 12568999999532    0 000011      11      11222


Q ss_pred             HHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          133 KFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       133 ~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      ..+++ ..|.++|+|++......                ..+. -|-+.|+-++.|.|=..
T Consensus       212 maIrs-m~PEViIvDEIGt~~d~----------------~A~~-ta~~~GVkli~TaHG~~  254 (308)
T COG3854         212 MAIRS-MSPEVIIVDEIGTEEDA----------------LAIL-TALHAGVKLITTAHGNG  254 (308)
T ss_pred             HHHHh-cCCcEEEEeccccHHHH----------------HHHH-HHHhcCcEEEEeecccc
Confidence            33444 47999999999853211                1112 23468999999998653

>TIGR03689 pup_AAA proteasome ATPase

Probab=98.38  E-value=3.6e-06  Score=76.87  Aligned_cols=126  Identities=15%  Similarity=0.131  Sum_probs=67.8

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc----Cc-hHHHHHHHHHHHHHh---hCCCc
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG----FY-TEQSAVINYLDKFVS---EHKDV  141 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~----~~-~~~~~~l~~l~~~l~---~~~~~  141 (226)
                      |+++..-++|+||||+|||+++..++..+..+... ..+.+..|++....    .+ .+....+..+.+...   ....+
T Consensus       212 gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~-~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p  290 (512)
T TIGR03689       212 DLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGA-ETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRP  290 (512)
T ss_pred             cCCCCcceEEECCCCCcHHHHHHHHHHhhcccccc-ccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCC
Confidence            56666669999999999999999999887532100 11234555542210    11 111111222222221   12368


Q ss_pred             eEEEEcCCchhhhcCcCCh--HHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464          142 KVVIIDSIAFHFRHGFVDL--ALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL  196 (226)
Q Consensus       142 ~lvVIDsl~~l~~~~~~~~--~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~  196 (226)
                      .+|+||++.+++.......  ......+.+++..|..+....++.||.+......++
T Consensus       291 ~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LD  347 (512)
T TIGR03689       291 VIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMID  347 (512)
T ss_pred             ceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCC
Confidence            8999999998875432211  111233456666665554445666665443333344

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=98.38  E-value=2.4e-06  Score=68.98  Aligned_cols=29  Identities=28%  Similarity=0.256  Sum_probs=26.0

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.|++|+|||||+..++...
T Consensus        27 ~i~~G~~~~i~G~nG~GKSTLl~~i~G~~   55 (204)
T cd03250          27 EVPKGELVAIVGPVGSGKSSLLSALLGEL   55 (204)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence            38899999999999999999998887754

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=98.38  E-value=3.8e-06  Score=73.52  Aligned_cols=108  Identities=19%  Similarity=0.157  Sum_probs=69.9

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-------------------------------
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-------------------------------  118 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-------------------------------  118 (226)
                      -|++|+++-|.|.+||||||||+-+..-..       +..+-+|.|++.                               
T Consensus       345 ~ikrGelvFliG~NGsGKST~~~LLtGL~~-------PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~  417 (546)
T COG4615         345 TIKRGELVFLIGGNGSGKSTLAMLLTGLYQ-------PQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEG  417 (546)
T ss_pred             EEecCcEEEEECCCCCcHHHHHHHHhcccC-------CCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCcc
Confidence            389999999999999999999987666553       334446666431                               


Q ss_pred             cCchH------------------------------HHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHH
Q 036464          119 GFYTE------------------------------QSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLS  168 (226)
Q Consensus       119 ~~~~~------------------------------~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~  168 (226)
                      +.+++                              |-+-+..+-.++++   -+++|+|+..+    + ++..=|.    
T Consensus       418 ~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEe---R~Ilv~DEWAA----D-QDPaFRR----  485 (546)
T COG4615         418 KASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEE---RDILVLDEWAA----D-QDPAFRR----  485 (546)
T ss_pred             CCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhh---CCeEEeehhhc----c-CChHHHH----
Confidence            00111                              11112334444444   48999999985    2 2333333    


Q ss_pred             HHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464          169 GIALKLMNLAKKFSLALLEPNLATTANL  196 (226)
Q Consensus       169 ~~~~~L~~la~~~~~~vi~~nq~~~~~~  196 (226)
                      .+-+.+.-..++.|.||+.++|=-.-++
T Consensus       486 ~FY~~lLp~LK~qGKTI~aIsHDd~YF~  513 (546)
T COG4615         486 EFYQVLLPLLKEQGKTIFAISHDDHYFI  513 (546)
T ss_pred             HHHHHHhHHHHHhCCeEEEEecCchhhh
Confidence            4556667777889999999999765444

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=98.38  E-value=2e-06  Score=76.07  Aligned_cols=45  Identities=13%  Similarity=0.239  Sum_probs=33.4

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++.++.     ..+    .++.+.|.++.++++.|+|++.|-..
T Consensus       182 ~P~ILLlDEPts~LD~-----~~r----~~l~~~L~~l~~~~~~TII~iTHdl~  226 (382)
T TIGR03415       182 DADILLMDEPFSALDP-----LIR----TQLQDELLELQAKLNKTIIFVSHDLD  226 (382)
T ss_pred             CCCEEEEECCCccCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            7899999999976643     122    25667777888788899888887654

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.37  E-value=3.6e-06  Score=77.35  Aligned_cols=29  Identities=31%  Similarity=0.271  Sum_probs=25.5

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+.+|+++.|.||+|+|||||+.-++...
T Consensus        33 ~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~   61 (510)
T PRK15439         33 TLHAGEVHALLGGNGAGKSTLMKIIAGIV   61 (510)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999998877543

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=98.37  E-value=1.6e-06  Score=78.35  Aligned_cols=70  Identities=24%  Similarity=0.384  Sum_probs=48.0

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH-HHH--HHHHHHHhhCCCceEEEEcCCch
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS-AVI--NYLDKFVSEHKDVKVVIIDSIAF  151 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~-~~l--~~l~~~l~~~~~~~lvVIDsl~~  151 (226)
                      .-..|+|++|+|||+|+..++..+.      ..+.+|+|++.+  .+...+ ..+  ...+.+......+++++||+++.
T Consensus       142 npl~L~G~~G~GKTHLl~Ai~~~l~------~~~~~v~yi~~~--~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~  213 (445)
T PRK12422        142 NPIYLFGPEGSGKTHLMQAAVHALR------ESGGKILYVRSE--LFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEV  213 (445)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHH------HcCCCEEEeeHH--HHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhh
Confidence            3468999999999999999998876      357899999965  222221 111  12223333334689999999986


Q ss_pred             h
Q 036464          152 H  152 (226)
Q Consensus       152 l  152 (226)
                      +
T Consensus       214 l  214 (445)
T PRK12422        214 F  214 (445)
T ss_pred             h
Confidence            4

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.37  E-value=2.8e-06  Score=71.90  Aligned_cols=45  Identities=13%  Similarity=0.172  Sum_probs=33.0

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++-++.     ..+    ..+...|++++++++.+||++.|-..
T Consensus       172 ~p~lllLDEPt~~LD~-----~~~----~~l~~~l~~~~~~~~~tviiisH~~~  216 (272)
T PRK13547        172 PPRYLLLDEPTAALDL-----AHQ----HRLLDTVRRLARDWNLGVLAIVHDPN  216 (272)
T ss_pred             CCCEEEEcCccccCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEECCHH
Confidence            6899999999976533     122    25666777777777899998888754

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=98.37  E-value=1.6e-06  Score=80.95  Aligned_cols=29  Identities=24%  Similarity=0.164  Sum_probs=25.3

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +++|+.+.|+|++|+|||||+.-++....
T Consensus       358 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~  386 (588)
T PRK13657        358 AKPGQTVAIVGPTGAGKSTLINLLQRVFD  386 (588)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            77999999999999999999977766553

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=98.36  E-value=2.8e-06  Score=73.94  Aligned_cols=45  Identities=13%  Similarity=0.071  Sum_probs=34.2

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++|+|++++.++.     ..    ..++++.|+++.+++++++|+++|-..
T Consensus       176 ~P~llilDEPts~LD~-----~~----~~~i~~lL~~l~~~~g~tii~itHdl~  220 (330)
T PRK15093        176 QPRLLIADEPTNAMEP-----TT----QAQIFRLLTRLNQNNNTTILLISHDLQ  220 (330)
T ss_pred             CCCEEEEeCCCCcCCH-----HH----HHHHHHHHHHHHHhcCCEEEEEECCHH
Confidence            7999999999976633     12    236677788888788999999988753

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=98.36  E-value=3.4e-06  Score=69.28  Aligned_cols=29  Identities=31%  Similarity=0.313  Sum_probs=25.9

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.|++|+|||||+..++...
T Consensus        29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~   57 (226)
T cd03234          29 HVESGQVMAILGSSGSGKTTLLDAISGRV   57 (226)
T ss_pred             EEcCCeEEEEECCCCCCHHHHHHHHhCcc
Confidence            48899999999999999999998877654

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=98.35  E-value=2.8e-06  Score=71.87  Aligned_cols=28  Identities=29%  Similarity=0.286  Sum_probs=25.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+.-++...
T Consensus        30 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   57 (272)
T PRK15056         30 VPGGSIAALVGVNGSGKSTLFKALMGFV   57 (272)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999998887653

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=98.35  E-value=2.9e-06  Score=68.68  Aligned_cols=28  Identities=29%  Similarity=0.299  Sum_probs=25.4

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+.-++...
T Consensus        31 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~   58 (207)
T cd03369          31 VKAGEKIGIVGRTGAGKSTLILALFRFL   58 (207)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            7899999999999999999998887654

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=98.35  E-value=3.3e-06  Score=70.51  Aligned_cols=45  Identities=13%  Similarity=0.151  Sum_probs=33.5

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++.++.     ..+    ..+...|++++++.+.+||+++|-..
T Consensus       166 ~p~vlllDEP~~~LD~-----~~~----~~l~~~l~~~~~~~~~tii~vsH~~~  210 (253)
T TIGR02323       166 RPRLVFMDEPTGGLDV-----SVQ----ARLLDLLRGLVRDLGLAVIIVTHDLG  210 (253)
T ss_pred             CCCEEEEcCCCccCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            7899999999976633     122    25666777777778999999988764

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=98.35  E-value=2.6e-06  Score=71.28  Aligned_cols=28  Identities=29%  Similarity=0.190  Sum_probs=25.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+|+++.|.|++|+|||||+..++...
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   51 (256)
T TIGR03873        24 APPGSLTGLLGPNGSGKSTLLRLLAGAL   51 (256)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            7899999999999999999998887643

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=98.35  E-value=1.7e-06  Score=82.19  Aligned_cols=29  Identities=31%  Similarity=0.173  Sum_probs=26.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +++|+.+.|+|++|+|||||+.-++..+.
T Consensus       476 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~  504 (686)
T TIGR03797       476 IEPGEFVAIVGPSGSGKSTLLRLLLGFET  504 (686)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            88999999999999999999987777653

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>CHL00176 ftsH cell division protein; Validated

Probab=98.35  E-value=2.6e-06  Score=79.99  Aligned_cols=110  Identities=15%  Similarity=0.101  Sum_probs=66.9

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH--HHHHHHHHHHhh--CCCceEEEEcCCch
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS--AVINYLDKFVSE--HKDVKVVIIDSIAF  151 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~--~~l~~l~~~l~~--~~~~~lvVIDsl~~  151 (226)
                      -++|+||||+|||+++..+|....         .+.++++..  .+.+..  .....+..++..  ...+.+|+||++..
T Consensus       218 gVLL~GPpGTGKT~LAralA~e~~---------~p~i~is~s--~f~~~~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~  286 (638)
T CHL00176        218 GVLLVGPPGTGKTLLAKAIAGEAE---------VPFFSISGS--EFVEMFVGVGAARVRDLFKKAKENSPCIVFIDEIDA  286 (638)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC---------CCeeeccHH--HHHHHhhhhhHHHHHHHHHHHhcCCCcEEEEecchh
Confidence            389999999999999999987653         356677643  121111  011223333322  23678999999998


Q ss_pred             hhhcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464          152 HFRHGFV----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL  196 (226)
Q Consensus       152 l~~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~  196 (226)
                      +.+....    ....+.+.+.+++..+..+....++.||.+.+.....+
T Consensus       287 l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD  335 (638)
T CHL00176        287 VGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILD  335 (638)
T ss_pred             hhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhh
Confidence            7643211    22345556666666666555666777776665544344

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.35  E-value=2.5e-06  Score=72.36  Aligned_cols=29  Identities=24%  Similarity=0.094  Sum_probs=25.6

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.|++|+|||||+.-++...
T Consensus        29 ~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~   57 (280)
T PRK13649         29 TIEDGSYTAFIGHTGSGKSTIMQLLNGLH   57 (280)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998887643

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.35  E-value=6.4e-06  Score=68.07  Aligned_cols=28  Identities=21%  Similarity=0.177  Sum_probs=25.6

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+..++...
T Consensus        26 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   53 (238)
T cd03249          26 IPPGKTVALVGSSGCGKSTVVSLLERFY   53 (238)
T ss_pred             ecCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence            7899999999999999999998887654

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=98.35  E-value=2e-06  Score=75.73  Aligned_cols=117  Identities=18%  Similarity=0.131  Sum_probs=62.8

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc-c-cC-chHHHHHHHHHHHHHhhCCCceEEEE
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC-L-GF-YTEQSAVINYLDKFVSEHKDVKVVII  146 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e-~-~~-~~~~~~~l~~l~~~l~~~~~~~lvVI  146 (226)
                      |+.+..-++|+||||+|||+++..++.....         ..+.+... . .. ..+....+..+-+.... ..+.+|+|
T Consensus       152 g~~~p~gvLL~GppGtGKT~lakaia~~l~~---------~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~-~~p~il~i  221 (364)
T TIGR01242       152 GIEPPKGVLLYGPPGTGKTLLAKAVAHETNA---------TFIRVVGSELVRKYIGEGARLVREIFELAKE-KAPSIIFI  221 (364)
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHhCCC---------CEEecchHHHHHHhhhHHHHHHHHHHHHHHh-cCCcEEEh
Confidence            5655666999999999999999999887631         22222211 0 00 01111122333333333 36789999


Q ss_pred             cCCchhhhcCcCC----hHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464          147 DSIAFHFRHGFVD----LALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL  196 (226)
Q Consensus       147 Dsl~~l~~~~~~~----~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~  196 (226)
                      |++..+.......    ....+..+.+++..+..+....++.||++.+....++
T Consensus       222 DEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld  275 (364)
T TIGR01242       222 DEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILD  275 (364)
T ss_pred             hhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCC
Confidence            9999876432211    1122233333443333333345777777666544443

Many proteins may score above the trusted cutoff because an internal

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.35  E-value=8.4e-06  Score=68.57  Aligned_cols=26  Identities=31%  Similarity=0.299  Sum_probs=24.1

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHH
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLA   95 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la   95 (226)
                      .||.|.++.|+|.+|||||||+..+.
T Consensus        17 ~ip~g~~~~vtGvSGsGKStL~~~~l   42 (261)
T cd03271          17 DIPLGVLTCVTGVSGSGKSSLINDTL   42 (261)
T ss_pred             eccCCcEEEEECCCCCchHHHHHHHH
Confidence            48999999999999999999998774

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=98.35  E-value=2.1e-06  Score=81.89  Aligned_cols=29  Identities=34%  Similarity=0.345  Sum_probs=25.8

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +++|+.+.|+|++|+|||||+.-++..+.
T Consensus       497 i~~G~~vaIvG~SGsGKSTLlklL~gl~~  525 (708)
T TIGR01193       497 IKMNSKTTIVGMSGSGKSTLAKLLVGFFQ  525 (708)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            78999999999999999999987776553

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.34  E-value=3.1e-06  Score=70.48  Aligned_cols=29  Identities=31%  Similarity=0.233  Sum_probs=25.5

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.|++|+|||||+.-++...
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264         25 EVKPGEVVAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            37899999999999999999998877543

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=98.34  E-value=3.5e-06  Score=68.99  Aligned_cols=28  Identities=29%  Similarity=0.411  Sum_probs=25.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+|+++.|.|++|+|||||+.-++...
T Consensus        31 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   58 (224)
T TIGR02324        31 VNAGECVALSGPSGAGKSTLLKSLYANY   58 (224)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999998877653

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=98.34  E-value=2.2e-06  Score=78.99  Aligned_cols=30  Identities=27%  Similarity=0.175  Sum_probs=26.2

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      -+++|+.+.|+|++|+|||||+.-++....
T Consensus       344 ~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~  373 (529)
T TIGR02857       344 TVPPGERVALVGPSGAGKSTLLNLLLGFVD  373 (529)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            378999999999999999999988876553

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=98.34  E-value=1.5e-06  Score=77.68  Aligned_cols=74  Identities=23%  Similarity=0.347  Sum_probs=47.8

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH-HHH--HHHHHHHhhCCCceEEEEcCCc
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS-AVI--NYLDKFVSEHKDVKVVIIDSIA  150 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~-~~l--~~l~~~l~~~~~~~lvVIDsl~  150 (226)
                      .....|+|++|+|||+|+..++..+..    ...+.+|+|++.+  .+...+ ..+  ..+..+.....++++|+||+++
T Consensus       136 ~n~l~l~G~~G~GKThL~~ai~~~l~~----~~~~~~v~yi~~~--~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~  209 (405)
T TIGR00362       136 YNPLFIYGGVGLGKTHLLHAIGNEILE----NNPNAKVVYVSSE--KFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQ  209 (405)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHH----hCCCCcEEEEEHH--HHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhh
Confidence            345789999999999999999888751    1236789999865  222211 000  1122232222357999999999


Q ss_pred             hhh
Q 036464          151 FHF  153 (226)
Q Consensus       151 ~l~  153 (226)
                      .+.
T Consensus       210 ~l~  212 (405)
T TIGR00362       210 FLA  212 (405)
T ss_pred             hhc
Confidence            653

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.34  E-value=3e-06  Score=72.26  Aligned_cols=28  Identities=18%  Similarity=0.228  Sum_probs=25.3

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+..++...
T Consensus        30 i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~   57 (287)
T PRK13641         30 LEEGSFVALVGHTGSGKSTLMQHFNALL   57 (287)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999999998887643

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.33  E-value=3.3e-06  Score=69.93  Aligned_cols=29  Identities=24%  Similarity=0.172  Sum_probs=25.8

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+.+|+++.|.|++|+|||||+..++...
T Consensus        24 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   52 (242)
T TIGR03411        24 YVDPGELRVIIGPNGAGKTTMMDVITGKT   52 (242)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999998888654

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=98.33  E-value=2.7e-06  Score=78.98  Aligned_cols=29  Identities=24%  Similarity=0.212  Sum_probs=25.7

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +++|+.+.|+||+|+|||||+.-++....
T Consensus       365 i~~G~~~aivG~sGsGKSTl~~ll~g~~~  393 (555)
T TIGR01194       365 IAQGDIVFIVGENGCGKSTLAKLFCGLYI  393 (555)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            78999999999999999999988876553

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.33  E-value=2.4e-06  Score=79.77  Aligned_cols=29  Identities=24%  Similarity=0.281  Sum_probs=25.8

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +++|+.+.|+|++|+|||||+.-++.-..
T Consensus       364 i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~  392 (592)
T PRK10790        364 VPSRGFVALVGHTGSGKSTLASLLMGYYP  392 (592)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            78999999999999999999988776553

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=98.33  E-value=2.7e-06  Score=78.86  Aligned_cols=28  Identities=29%  Similarity=0.232  Sum_probs=25.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+.+.|+|++|+|||||+.-++...
T Consensus       346 i~~G~~~aivG~sGsGKSTL~~ll~g~~  373 (547)
T PRK10522        346 IKRGELLFLIGGNGSGKSTLAMLLTGLY  373 (547)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999998777654

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=98.33  E-value=2.9e-06  Score=69.21  Aligned_cols=28  Identities=36%  Similarity=0.213  Sum_probs=25.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.||+|+|||||+..++...
T Consensus        27 i~~G~~~~i~G~nGsGKSTLl~~i~G~~   54 (220)
T cd03245          27 IRAGEKVAIIGRVGSGKSTLLKLLAGLY   54 (220)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            7899999999999999999998887653

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=98.33  E-value=3.8e-06  Score=68.90  Aligned_cols=28  Identities=29%  Similarity=0.255  Sum_probs=25.3

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+.-++...
T Consensus        37 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   64 (226)
T cd03248          37 LHPGEVTALVGPSGSGKSTVVALLENFY   64 (226)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            7899999999999999999998877653

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=98.33  E-value=3.1e-06  Score=78.74  Aligned_cols=29  Identities=24%  Similarity=0.188  Sum_probs=26.5

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +++|+.+.|.|++|+|||||+.-++....
T Consensus       363 i~~Ge~i~IvG~sGsGKSTLlklL~gl~~  391 (576)
T TIGR02204       363 VRPGETVALVGPSGAGKSTLFQLLLRFYD  391 (576)
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence            88999999999999999999998887654

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.33  E-value=3.6e-06  Score=68.32  Aligned_cols=27  Identities=33%  Similarity=0.300  Sum_probs=23.7

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++| ++.|.|++|+|||||+.-++...
T Consensus        23 i~~g-~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264          23 LGPG-MYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             EcCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence            6788 99999999999999998887643

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.32  E-value=3.1e-06  Score=74.26  Aligned_cols=45  Identities=16%  Similarity=0.175  Sum_probs=36.5

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +|++|++|++++.++.         ....+++..|+.+-+++|.+-++++|=-+
T Consensus       444 kP~~i~LDEPTSALD~---------SVQaQvv~LLr~LQ~k~~LsYLFISHDL~  488 (534)
T COG4172         444 KPELILLDEPTSALDR---------SVQAQVLDLLRDLQQKHGLSYLFISHDLA  488 (534)
T ss_pred             CCcEEEecCCchHhhH---------HHHHHHHHHHHHHHHHhCCeEEEEeccHH
Confidence            6899999999976633         12347888999999999999999998644

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=98.32  E-value=8e-06  Score=66.67  Aligned_cols=28  Identities=36%  Similarity=0.286  Sum_probs=25.3

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+.-++...
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   54 (221)
T cd03244          27 IKPGEKVGIVGRTGSGKSSLLLALFRLV   54 (221)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            7899999999999999999998887653

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.32  E-value=2.6e-06  Score=69.98  Aligned_cols=28  Identities=32%  Similarity=0.135  Sum_probs=24.5

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+.+.|.|++|+|||||+.-++..+
T Consensus        50 i~~Ge~vGiiG~NGaGKSTLlkliaGi~   77 (249)
T COG1134          50 IYKGERVGIIGHNGAGKSTLLKLIAGIY   77 (249)
T ss_pred             EeCCCEEEEECCCCCcHHHHHHHHhCcc
Confidence            7899999999999999999997666544

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=98.32  E-value=4.4e-06  Score=70.18  Aligned_cols=45  Identities=9%  Similarity=0.065  Sum_probs=33.3

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++-++..         ....+.+.|++++++.+.+||++.|-..
T Consensus       170 ~p~llllDEPt~~LD~~---------~~~~l~~~l~~~~~~~g~tvii~tH~~~  214 (262)
T PRK09984        170 QAKVILADEPIASLDPE---------SARIVMDTLRDINQNDGITVVVTLHQVD  214 (262)
T ss_pred             CCCEEEecCccccCCHH---------HHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            78999999999766331         1235667788887777888888877664

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=98.31  E-value=3.7e-06  Score=70.33  Aligned_cols=28  Identities=25%  Similarity=0.261  Sum_probs=25.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+|+++.|.|++|+|||||+.-++...
T Consensus        25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (255)
T PRK11231         25 LPTGKITALIGPNGCGKSTLLKCFARLL   52 (255)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            7899999999999999999998887643

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.31  E-value=7e-06  Score=77.27  Aligned_cols=45  Identities=24%  Similarity=0.331  Sum_probs=34.5

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++|+|++++.++.     ..+    .++++.|++++++++.+||+++|-..
T Consensus       481 ~p~llllDEPts~LD~-----~~~----~~i~~ll~~l~~~~g~tvi~isHdl~  525 (623)
T PRK10261        481 NPKVIIADEAVSALDV-----SIR----GQIINLLLDLQRDFGIAYLFISHDMA  525 (623)
T ss_pred             CCCEEEEeCCcccCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            7999999999976633     222    36677788888888999999988653

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=98.31  E-value=2.5e-06  Score=77.18  Aligned_cols=72  Identities=25%  Similarity=0.360  Sum_probs=47.9

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH-HHH--HHHHHHHhhCCCceEEEEcCCch
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS-AVI--NYLDKFVSEHKDVKVVIIDSIAF  151 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~-~~l--~~l~~~l~~~~~~~lvVIDsl~~  151 (226)
                      .-+.|+|++|+|||+|+..++..+..    ...+.+|+|++.+  .+...+ ..+  .....+.+...++++|+||+++.
T Consensus       149 ~~l~l~G~~G~GKThL~~ai~~~~~~----~~~~~~v~yi~~~--~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~  222 (450)
T PRK00149        149 NPLFIYGGVGLGKTHLLHAIGNYILE----KNPNAKVVYVTSE--KFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQF  222 (450)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHH----hCCCCeEEEEEHH--HHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhh
Confidence            45789999999999999999988752    1236789999875  222211 111  11223333333689999999996


Q ss_pred             h
Q 036464          152 H  152 (226)
Q Consensus       152 l  152 (226)
                      +
T Consensus       223 l  223 (450)
T PRK00149        223 L  223 (450)
T ss_pred             h
Confidence            5

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=98.30  E-value=9e-06  Score=69.98  Aligned_cols=29  Identities=31%  Similarity=0.274  Sum_probs=25.6

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+.+|+++.|.|++|+|||||+..++...
T Consensus        29 ~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~   57 (305)
T PRK13651         29 EINQGEFIAIIGQTGSGKTTFIEHLNALL   57 (305)
T ss_pred             EEeCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            37899999999999999999998887653

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=98.30  E-value=9.1e-06  Score=68.18  Aligned_cols=35  Identities=26%  Similarity=0.185  Sum_probs=28.2

Q ss_pred             hHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           62 DLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        62 ~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .|+.+-  =+.+|+++.|.|++|+|||||+.-++...
T Consensus        16 ~l~~i~--~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~   50 (255)
T cd03236          16 KLHRLP--VPREGQVLGLVGPNGIGKSTALKILAGKL   50 (255)
T ss_pred             hhhcCC--CCCCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            445443  27899999999999999999998777664

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=98.30  E-value=7e-06  Score=78.64  Aligned_cols=111  Identities=20%  Similarity=0.153  Sum_probs=64.1

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc--cCc-hHHHHHHHHHHHHHhhCCCceEEEE
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL--GFY-TEQSAVINYLDKFVSEHKDVKVVII  146 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~--~~~-~~~~~~l~~l~~~l~~~~~~~lvVI  146 (226)
                      |++++.-++|+||||+|||+++..++...-         ...++++...  ..+ .+....+..+-+.... ..+.+|+|
T Consensus       208 gi~~~~giLL~GppGtGKT~laraia~~~~---------~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~~-~~p~il~i  277 (733)
T TIGR01243       208 GIEPPKGVLLYGPPGTGKTLLAKAVANEAG---------AYFISINGPEIMSKYYGESEERLREIFKEAEE-NAPSIIFI  277 (733)
T ss_pred             CCCCCceEEEECCCCCChHHHHHHHHHHhC---------CeEEEEecHHHhcccccHHHHHHHHHHHHHHh-cCCcEEEe
Confidence            688888899999999999999999887653         3466666431  011 1111122333333333 36789999


Q ss_pred             cCCchhhhcCcCChH-HHHHHHHHHHHHHHHHHHHcCCEEEEecc
Q 036464          147 DSIAFHFRHGFVDLA-LRTRVLSGIALKLMNLAKKFSLALLEPNL  190 (226)
Q Consensus       147 Dsl~~l~~~~~~~~~-~r~~~l~~~~~~L~~la~~~~~~vi~~nq  190 (226)
                      |++..+......... .....+..++..+..+..+.++.||.+.+
T Consensus       278 DEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn  322 (733)
T TIGR01243       278 DEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATN  322 (733)
T ss_pred             ehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecC
Confidence            999977643211111 11223445555555554445566663433

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.30  E-value=3.4e-06  Score=78.49  Aligned_cols=28  Identities=21%  Similarity=0.239  Sum_probs=25.5

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+.+.|+|++|+|||||+.-++...
T Consensus       338 i~~G~~~~ivG~sGsGKSTLl~ll~g~~  365 (569)
T PRK10789        338 LKPGQMLGICGPTGSGKSTLLSLIQRHF  365 (569)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            7899999999999999999998877655

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=98.29  E-value=4e-06  Score=77.89  Aligned_cols=29  Identities=24%  Similarity=0.211  Sum_probs=26.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +++|+.+.|+|++|+|||||+.-++....
T Consensus       355 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~  383 (571)
T TIGR02203       355 IEPGETVALVGRSGSGKSTLVNLIPRFYE  383 (571)
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence            78999999999999999999988887663

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=98.29  E-value=3.5e-06  Score=80.18  Aligned_cols=29  Identities=31%  Similarity=0.232  Sum_probs=26.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +++|+.+.|+|++|+|||||+.-++....
T Consensus       480 i~~G~~vaivG~sGsGKSTL~~ll~g~~~  508 (694)
T TIGR01846       480 IKPGEFIGIVGPSGSGKSTLTKLLQRLYT  508 (694)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            78999999999999999999988877653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.29  E-value=5.4e-06  Score=68.75  Aligned_cols=29  Identities=24%  Similarity=0.135  Sum_probs=25.6

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+.+|+++.|.|++|+|||||+.-++...
T Consensus        24 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124         24 DCPQGETLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999998887653

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=98.28  E-value=2.1e-05  Score=64.20  Aligned_cols=112  Identities=13%  Similarity=0.012  Sum_probs=61.1

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhcccccc---CCCCCeEEEEecccc-----Cc-----hHHHHHHHHHHHHHhhCCC
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEF---GGLGGKAIYIGKCLG-----FY-----TEQSAVINYLDKFVSEHKD  140 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~---~~~~~~vlyi~~e~~-----~~-----~~~~~~l~~l~~~l~~~~~  140 (226)
                      ++++.|+||+|+|||+|+.+++....++...   -....++-|++....     +.     ..-...+..+...+....+
T Consensus        29 ~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~  108 (213)
T cd03281          29 PSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATR  108 (213)
T ss_pred             ceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCC
Confidence            4789999999999999999998654321100   011234445543210     00     0111223444444444457


Q ss_pred             ceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHH--cCCEEEEeccccc
Q 036464          141 VKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKK--FSLALLEPNLATT  193 (226)
Q Consensus       141 ~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~--~~~~vi~~nq~~~  193 (226)
                      ..++++|++..-...     .+....   +...+++++++  .+.++|++.|-..
T Consensus       109 ~slvllDE~~~gtd~-----~~~~~~---~~ail~~l~~~~~~~~~vli~TH~~~  155 (213)
T cd03281         109 RSLVLIDEFGKGTDT-----EDGAGL---LIATIEHLLKRGPECPRVIVSTHFHE  155 (213)
T ss_pred             CcEEEeccccCCCCH-----HHHHHH---HHHHHHHHHhcCCCCcEEEEEcChHH
Confidence            899999999864421     122222   22345555543  2457777777653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.28  E-value=1.4e-05  Score=62.85  Aligned_cols=37  Identities=27%  Similarity=0.423  Sum_probs=31.9

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL  118 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~  118 (226)
                      ++.+.|+||+|||+++..++....      ..+.+|++++...
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~------~~g~~v~~i~~D~   38 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLK------KKGKKVLLVAADT   38 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH------HCCCcEEEEEcCC
Confidence            678999999999999999998876      4577899999764

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.28  E-value=3.7e-06  Score=78.50  Aligned_cols=28  Identities=25%  Similarity=0.211  Sum_probs=25.4

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+.+.|+|++|+|||||+.-++...
T Consensus       373 i~~G~~vaIvG~SGsGKSTL~~lL~g~~  400 (588)
T PRK11174        373 LPAGQRIALVGPSGAGKTSLLNALLGFL  400 (588)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999999998777665

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=98.28  E-value=3.4e-06  Score=78.82  Aligned_cols=28  Identities=29%  Similarity=0.200  Sum_probs=25.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+.+.|+|++|+|||||+.-++...
T Consensus       358 i~~G~~~~ivG~sGsGKSTL~~ll~g~~  385 (585)
T TIGR01192       358 AKAGQTVAIVGPTGAGKTTLINLLQRVY  385 (585)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHccCC
Confidence            7899999999999999999998777654

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.28  E-value=6.9e-06  Score=67.37  Aligned_cols=29  Identities=31%  Similarity=0.235  Sum_probs=26.1

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+.+|+++.|.|++|+|||||+.-++...
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260          22 DIPKGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            37899999999999999999999887765

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.27  E-value=3.5e-06  Score=78.52  Aligned_cols=29  Identities=28%  Similarity=0.242  Sum_probs=26.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +++|+.+.|+|++|+|||||+.-++....
T Consensus       363 i~~G~~~aivG~sGsGKSTL~~ll~g~~~  391 (574)
T PRK11160        363 IKAGEKVALLGRTGCGKSTLLQLLTRAWD  391 (574)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            78999999999999999999988877653

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.27  E-value=3.5e-06  Score=78.95  Aligned_cols=31  Identities=35%  Similarity=0.312  Sum_probs=28.3

Q ss_pred             CCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      |=+++|+++.|-||+|+|||||+-.++....
T Consensus        51 g~~~~Gel~AimG~SGsGKtTLL~~Lagr~~   81 (613)
T KOG0061|consen   51 GTAKPGELLAIMGPSGSGKTTLLNALAGRLN   81 (613)
T ss_pred             EEEecCeEEEEECCCCCCHHHHHHHHhcccc
Confidence            5689999999999999999999998887765

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.27  E-value=4.5e-06  Score=76.32  Aligned_cols=29  Identities=28%  Similarity=0.294  Sum_probs=25.8

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.|++|+|||||+..++...
T Consensus        46 sI~~GEivgIiGpNGSGKSTLLkiLaGLl   74 (549)
T PRK13545         46 EVPEGEIVGIIGLNGSGKSTLSNLIAGVT   74 (549)
T ss_pred             EEeCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998887654

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=98.27  E-value=1.4e-05  Score=65.62  Aligned_cols=115  Identities=11%  Similarity=-0.045  Sum_probs=67.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccC---CCCCeEEEEec---cc--cCch-----HHHHHHHHHHHHHhh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG---GLGGKAIYIGK---CL--GFYT-----EQSAVINYLDKFVSE  137 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~---~~~~~vlyi~~---e~--~~~~-----~~~~~l~~l~~~l~~  137 (226)
                      +..|+++.|.||+|+|||+++..++....++....   ...-++-|++.   .+  .+..     .-...+.++...++.
T Consensus        28 ~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~  107 (222)
T cd03287          28 AEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTRMGASDSIQHGMSTFMVELSETSHILSN  107 (222)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEEecCccccccccchHHHHHHHHHHHHHh
Confidence            56789999999999999999999988665432100   01112222221   00  0111     111335667777776


Q ss_pred             CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          138 HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       138 ~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      ..+..++++|++..-...     .+.....   ...++.+.+..+.++|++.|-..
T Consensus       108 ~~~~sLvllDE~~~gT~~-----~d~~~i~---~~il~~l~~~~~~~~i~~TH~~~  155 (222)
T cd03287         108 CTSRSLVILDELGRGTST-----HDGIAIA---YATLHYLLEEKKCLVLFVTHYPS  155 (222)
T ss_pred             CCCCeEEEEccCCCCCCh-----hhHHHHH---HHHHHHHHhccCCeEEEEcccHH
Confidence            667899999999643221     1122112   23444555546888888888754

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=98.27  E-value=1.4e-05  Score=66.87  Aligned_cols=29  Identities=21%  Similarity=0.185  Sum_probs=25.8

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.|++|+|||||+.-++...
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   55 (257)
T PRK10619         27 QANAGDVISIIGSSGSGKSTFLRCINFLE   55 (257)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999998777654

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=98.27  E-value=8.6e-06  Score=78.03  Aligned_cols=118  Identities=14%  Similarity=0.116  Sum_probs=72.1

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc--cC-chHHHHHHHHHHHHHhhCCCceEEEE
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL--GF-YTEQSAVINYLDKFVSEHKDVKVVII  146 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~--~~-~~~~~~~l~~l~~~l~~~~~~~lvVI  146 (226)
                      |+++..-++|+||||+|||+++..+|....         .+.+.++...  .. ..+.-..+..+-+..... .+.+|+|
T Consensus       483 g~~~~~giLL~GppGtGKT~lakalA~e~~---------~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~-~p~iifi  552 (733)
T TIGR01243       483 GIRPPKGVLLFGPPGTGKTLLAKAVATESG---------ANFIAVRGPEILSKWVGESEKAIREIFRKARQA-APAIIFF  552 (733)
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHhcC---------CCEEEEehHHHhhcccCcHHHHHHHHHHHHHhc-CCEEEEE
Confidence            455555689999999999999999998753         3455555321  00 111112233443334343 6899999


Q ss_pred             cCCchhhhcCcC--ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464          147 DSIAFHFRHGFV--DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA  197 (226)
Q Consensus       147 Dsl~~l~~~~~~--~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~  197 (226)
                      |++.++......  ......+.+.+++..+..+....++.||.+.+....++.
T Consensus       553 DEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~  605 (733)
T TIGR01243       553 DEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDP  605 (733)
T ss_pred             EChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCH
Confidence            999987753221  111223456667777776666678888877665554543

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.26  E-value=8e-06  Score=75.04  Aligned_cols=29  Identities=24%  Similarity=0.157  Sum_probs=25.4

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.|++|+|||||+..++...
T Consensus        27 ~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~   55 (510)
T PRK09700         27 TVYPGEIHALLGENGAGKSTLMKVLSGIH   55 (510)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHcCCc
Confidence            37899999999999999999998777554

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=98.26  E-value=8e-06  Score=66.28  Aligned_cols=114  Identities=15%  Similarity=0.033  Sum_probs=61.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccc-------cccCCCC-CeEEEEeccccCchHH-----HHHHHHHHHHHhh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIP-------VEFGGLG-GKAIYIGKCLGFYTEQ-----SAVINYLDKFVSE  137 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp-------~~~~~~~-~~vlyi~~e~~~~~~~-----~~~l~~l~~~l~~  137 (226)
                      ...|+++.|.||+|+|||+++..++..+.+-       ....... ..-+|......+..+.     ..-+.++...+..
T Consensus        26 ~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~  105 (204)
T cd03282          26 RGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDY  105 (204)
T ss_pred             eCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecCCccccchhhhHHHHHHHHHHHHHHh
Confidence            5678999999999999999998887555431       1111000 0112221111111110     0112334444444


Q ss_pred             CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          138 HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       138 ~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      ..+++++++|++..-..     ..++......   .++.+. +.+.++|++.|...
T Consensus       106 ~~~~~lvllDE~~~gt~-----~~~~~~l~~~---il~~l~-~~~~~~i~~TH~~~  152 (204)
T cd03282         106 ADGDSLVLIDELGRGTS-----SADGFAISLA---ILECLI-KKESTVFFATHFRD  152 (204)
T ss_pred             cCCCcEEEeccccCCCC-----HHHHHHHHHH---HHHHHH-hcCCEEEEECChHH
Confidence            44689999999975332     1122222222   333443 45999999999664

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=98.26  E-value=4.8e-06  Score=77.09  Aligned_cols=29  Identities=24%  Similarity=0.220  Sum_probs=26.0

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +++|+.+.|+|++|+|||||+.-++....
T Consensus       341 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~  369 (544)
T TIGR01842       341 LQAGEALAIIGPSGSGKSTLARLIVGIWP  369 (544)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            78999999999999999999988877653

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.26  E-value=1.1e-05  Score=69.99  Aligned_cols=29  Identities=21%  Similarity=0.178  Sum_probs=25.7

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.|++|+|||||+..++...
T Consensus        48 ~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~   76 (320)
T PRK13631         48 TFEKNKIYFIIGNSGSGKSTLVTHFNGLI   76 (320)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999998887643

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.25  E-value=1.4e-05  Score=71.25  Aligned_cols=75  Identities=20%  Similarity=0.190  Sum_probs=51.5

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc--hHHH--------------HHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY--TEQS--------------AVINYLDKF  134 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~--~~~~--------------~~l~~l~~~  134 (226)
                      ..++.++.++||+|+||||++.++|.....     ..+.+|.+++++.+..  .+|+              .....+.+.
T Consensus       220 ~~~~~vi~lvGptGvGKTTtaaKLA~~~~~-----~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~  294 (432)
T PRK12724        220 KNQRKVVFFVGPTGSGKTTSIAKLAAKYFL-----HMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKET  294 (432)
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHHH-----hcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHH
Confidence            456789999999999999999999986532     3577899998764221  1121              112334444


Q ss_pred             HhhCCCceEEEEcCCch
Q 036464          135 VSEHKDVKVVIIDSIAF  151 (226)
Q Consensus       135 l~~~~~~~lvVIDsl~~  151 (226)
                      +.. .+.++|+||+...
T Consensus       295 l~~-~~~D~VLIDTaGr  310 (432)
T PRK12724        295 LAR-DGSELILIDTAGY  310 (432)
T ss_pred             HHh-CCCCEEEEeCCCC
Confidence            443 4789999999653

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=98.25  E-value=7.1e-06  Score=67.93  Aligned_cols=28  Identities=29%  Similarity=0.351  Sum_probs=25.5

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      -+++|+++.|.|++|+|||||+.-++..
T Consensus        22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978        22 TVKKGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999999888765

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=1.3e-05  Score=69.86  Aligned_cols=99  Identities=18%  Similarity=0.204  Sum_probs=67.4

Q ss_pred             chHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           38 GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        38 ~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      +...|-+++++.    ..+|--+|+   .+.|+..|=.-++++||||+|||.||..+|..+.           +-||+-.
T Consensus       216 gl~~AK~lL~EA----VvlPi~mPe---~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~-----------tTFFNVS  277 (491)
T KOG0738|consen  216 GLHEAKKLLKEA----VVLPIWMPE---FFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG-----------TTFFNVS  277 (491)
T ss_pred             chHHHHHHHHHH----HhhhhhhHH---HHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc-----------CeEEEec
Confidence            456777888876    223333333   4668888888899999999999999999998873           5666522


Q ss_pred             c-----cCchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhc
Q 036464          118 L-----GFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRH  155 (226)
Q Consensus       118 ~-----~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~  155 (226)
                      .     .-..+.-.++.-|-++...+ .|..|+||+|.++-..
T Consensus       278 sstltSKwRGeSEKlvRlLFemARfy-APStIFiDEIDslcs~  319 (491)
T KOG0738|consen  278 SSTLTSKWRGESEKLVRLLFEMARFY-APSTIFIDEIDSLCSQ  319 (491)
T ss_pred             hhhhhhhhccchHHHHHHHHHHHHHh-CCceeehhhHHHHHhc
Confidence            1     00112223455555555554 7899999999988754

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=98.25  E-value=6.6e-06  Score=69.80  Aligned_cols=28  Identities=21%  Similarity=0.164  Sum_probs=25.9

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+..++...
T Consensus        27 I~~Ge~~~IvG~nGsGKSTLl~~L~gl~   54 (275)
T cd03289          27 ISPGQRVGLLGRTGSGKSTLLSAFLRLL   54 (275)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence            7899999999999999999999887765

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.25  E-value=2.1e-05  Score=63.48  Aligned_cols=38  Identities=29%  Similarity=0.384  Sum_probs=31.4

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL  118 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~  118 (226)
                      .++.++||+|+||||.+-.+|.....      .+.+|..|+...
T Consensus         2 ~vi~lvGptGvGKTTt~aKLAa~~~~------~~~~v~lis~D~   39 (196)
T PF00448_consen    2 KVIALVGPTGVGKTTTIAKLAARLKL------KGKKVALISADT   39 (196)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHHH------TT--EEEEEEST
T ss_pred             EEEEEECCCCCchHhHHHHHHHHHhh------ccccceeecCCC
Confidence            47899999999999999999999873      488999999764

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.25  E-value=5.6e-06  Score=76.21  Aligned_cols=46  Identities=7%  Similarity=-0.040  Sum_probs=35.2

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      +++++++|++++.++..     .    ...++..|++++++++.+||++.|-...
T Consensus       186 ~p~lllLDEPt~~LD~~-----~----~~~l~~~l~~l~~~~g~tviivtHd~~~  231 (520)
T TIGR03269       186 EPFLFLADEPTGTLDPQ-----T----AKLVHNALEEAVKASGISMVLTSHWPEV  231 (520)
T ss_pred             CCCEEEeeCCcccCCHH-----H----HHHHHHHHHHHHHhcCcEEEEEeCCHHH
Confidence            79999999999876432     1    2356677888888889999999887653

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=98.25  E-value=1.7e-05  Score=63.22  Aligned_cols=110  Identities=12%  Similarity=-0.006  Sum_probs=59.9

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccC---CCCCeEEEEecc-----ccCchH----HH-HHHHHHHHHHhhCCCce
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFG---GLGGKAIYIGKC-----LGFYTE----QS-AVINYLDKFVSEHKDVK  142 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~---~~~~~vlyi~~e-----~~~~~~----~~-~~l~~l~~~l~~~~~~~  142 (226)
                      ++.|+|++|+|||+++.+++....+.....   ....++-|++.-     ..+...    .+ .-..++...+....+++
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~   80 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS   80 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence            367999999999999999986664321100   011222222210     001111    01 12334555555545789


Q ss_pred             EEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          143 VVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       143 lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      ++++|++.+-...     ..+.....   ..++.+.++.+.++|++.|...
T Consensus        81 llllDEp~~g~d~-----~~~~~~~~---~~l~~l~~~~~~~iii~TH~~~  123 (185)
T smart00534       81 LVLLDELGRGTST-----YDGVAIAA---AVLEYLLEKIGALTLFATHYHE  123 (185)
T ss_pred             EEEEecCCCCCCH-----HHHHHHHH---HHHHHHHhcCCCeEEEEecHHH
Confidence            9999999865432     22222222   2334444445888888888763

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=98.25  E-value=1.1e-05  Score=66.09  Aligned_cols=110  Identities=11%  Similarity=-0.011  Sum_probs=59.3

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhcccccc---CCCCCeEEEEeccc--cCchHH--------HHHHHHHHHHHhhCCCc
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEF---GGLGGKAIYIGKCL--GFYTEQ--------SAVINYLDKFVSEHKDV  141 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~---~~~~~~vlyi~~e~--~~~~~~--------~~~l~~l~~~l~~~~~~  141 (226)
                      +++.|+||+|+|||+++..++....+....   .....++-|++.-.  ....+.        ...+..+..++....++
T Consensus        31 ~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~  110 (216)
T cd03284          31 QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRIGASDDLAGGRSTFMVEMVETANILNNATER  110 (216)
T ss_pred             eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccCCchhhhccCcchHHHHHHHHHHHHHhCCCC
Confidence            899999999999999999997655432100   00112333333100  001111        12234556666655578


Q ss_pred             eEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          142 KVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       142 ~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      .++++|++..-...     .+......   ..++.+.+..++++|+++|..
T Consensus       111 ~llllDEp~~gt~~-----lD~~~~~~---~il~~l~~~~~~~vi~~TH~~  153 (216)
T cd03284         111 SLVLLDEIGRGTST-----YDGLSIAW---AIVEYLHEKIGAKTLFATHYH  153 (216)
T ss_pred             eEEEEecCCCCCCh-----HHHHHHHH---HHHHHHHhccCCcEEEEeCcH
Confidence            99999999321111     01111112   233334444488889888874

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=98.24  E-value=1.9e-05  Score=69.03  Aligned_cols=78  Identities=14%  Similarity=0.097  Sum_probs=52.9

Q ss_pred             CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc-c--cCchHHHHHHH----HHHHHHhhCCCc
Q 036464           69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC-L--GFYTEQSAVIN----YLDKFVSEHKDV  141 (226)
Q Consensus        69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e-~--~~~~~~~~~l~----~l~~~l~~~~~~  141 (226)
                      .|+++-.++.|+||||+|||.+|..+|..+-         ...+.++.- +  ....|.-..+.    ...+.++...++
T Consensus       143 ~~ik~PlgllL~GPPGcGKTllAraiA~elg---------~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aP  213 (413)
T PLN00020        143 PNIKVPLILGIWGGKGQGKSFQCELVFKKMG---------IEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKM  213 (413)
T ss_pred             cCCCCCeEEEeeCCCCCCHHHHHHHHHHHcC---------CCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCC
Confidence            5688889999999999999999999998863         345666632 1  11122222232    233333234579


Q ss_pred             eEEEEcCCchhhhc
Q 036464          142 KVVIIDSIAFHFRH  155 (226)
Q Consensus       142 ~lvVIDsl~~l~~~  155 (226)
                      .+|+||+|.++...
T Consensus       214 cVLFIDEIDA~~g~  227 (413)
T PLN00020        214 SCLFINDLDAGAGR  227 (413)
T ss_pred             eEEEEehhhhcCCC
Confidence            99999999987754

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.24  E-value=1.1e-05  Score=73.96  Aligned_cols=29  Identities=21%  Similarity=0.141  Sum_probs=25.4

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+.+|+++.|.||+|+|||||+.-++...
T Consensus        26 ~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~   54 (501)
T PRK10762         26 NVYPGRVMALVGENGAGKSTMMKVLTGIY   54 (501)
T ss_pred             EEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999998777654

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.24  E-value=1.1e-05  Score=73.65  Aligned_cols=28  Identities=25%  Similarity=0.335  Sum_probs=25.3

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+..++...
T Consensus        26 i~~Ge~~~liG~nGsGKSTLl~~l~G~~   53 (490)
T PRK10938         26 LNAGDSWAFVGANGSGKSALARALAGEL   53 (490)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            7899999999999999999998887643

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.23  E-value=7.3e-05  Score=66.95  Aligned_cols=39  Identities=28%  Similarity=0.226  Sum_probs=33.6

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL  118 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~  118 (226)
                      ..++.++|++|+||||++..+|..+.      ..+.+|+.+++..
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~------~~G~kV~lV~~D~  138 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQ------RKGFKPCLVCADT  138 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH------HCCCCEEEEcCcc
Confidence            46899999999999999999998775      4577999998764

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=98.23  E-value=8.8e-06  Score=77.71  Aligned_cols=29  Identities=28%  Similarity=0.291  Sum_probs=26.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +++|+.+.|+|++|+||||++.-++....
T Consensus       504 i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~  532 (711)
T TIGR00958       504 LHPGEVVALVGPSGSGKSTVAALLQNLYQ  532 (711)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence            78999999999999999999988877654

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=98.22  E-value=6.6e-06  Score=70.06  Aligned_cols=73  Identities=23%  Similarity=0.208  Sum_probs=50.0

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCC-CCeEEEEeccccCc--hHHHHH--------------HHHHHHH
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL-GGKAIYIGKCLGFY--TEQSAV--------------INYLDKF  134 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~-~~~vlyi~~e~~~~--~~~~~~--------------l~~l~~~  134 (226)
                      +.+.++.|+||+|+||||++..++..+..     .. +.+|.+|+.+.+..  .+++..              -..+.+.
T Consensus       192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~-----~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~  266 (282)
T TIGR03499       192 EQGGVIALVGPTGVGKTTTLAKLAARFVL-----EHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKA  266 (282)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHH-----HcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHH
Confidence            46789999999999999999999988762     11 37999999774321  122211              1234455


Q ss_pred             HhhCCCceEEEEcCC
Q 036464          135 VSEHKDVKVVIIDSI  149 (226)
Q Consensus       135 l~~~~~~~lvVIDsl  149 (226)
                      +....+.++|+||..
T Consensus       267 l~~~~~~d~vliDt~  281 (282)
T TIGR03499       267 LDRLRDKDLILIDTA  281 (282)
T ss_pred             HHHccCCCEEEEeCC
Confidence            555456788888875

>PRK10867 signal recognition particle protein; Provisional

Probab=98.22  E-value=7.3e-05  Score=67.21  Aligned_cols=72  Identities=22%  Similarity=0.171  Sum_probs=50.0

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCC-CCeEEEEeccccCch--HHHH---------------------HHH
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL-GGKAIYIGKCLGFYT--EQSA---------------------VIN  129 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~-~~~vlyi~~e~~~~~--~~~~---------------------~l~  129 (226)
                      ..++.++|++|+||||++..+|..+.      .. +.+|+.+++..+...  +|+.                     ...
T Consensus       100 p~vI~~vG~~GsGKTTtaakLA~~l~------~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~  173 (433)
T PRK10867        100 PTVIMMVGLQGAGKTTTAGKLAKYLK------KKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAK  173 (433)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHH------HhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHH
Confidence            47999999999999999999999876      35 789999997753321  1221                     111


Q ss_pred             HHHHHHhhCCCceEEEEcCCchh
Q 036464          130 YLDKFVSEHKDVKVVIIDSIAFH  152 (226)
Q Consensus       130 ~l~~~l~~~~~~~lvVIDsl~~l  152 (226)
                      ...+.... .++++||||....+
T Consensus       174 ~a~~~a~~-~~~DvVIIDTaGrl  195 (433)
T PRK10867        174 AALEEAKE-NGYDVVIVDTAGRL  195 (433)
T ss_pred             HHHHHHHh-cCCCEEEEeCCCCc
Confidence            12222222 36899999999854

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.21  E-value=5.8e-06  Score=72.79  Aligned_cols=76  Identities=24%  Similarity=0.263  Sum_probs=53.9

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCC-CeEEEEeccccC--chHHHHH--------------HHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLG-GKAIYIGKCLGF--YTEQSAV--------------INYLDK  133 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~-~~vlyi~~e~~~--~~~~~~~--------------l~~l~~  133 (226)
                      +..|.++.|+||+|+||||++..++.....     ..+ .+|.+|+++.+.  -.+|+..              -..+..
T Consensus       134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~-----~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~  208 (374)
T PRK14722        134 MERGGVFALMGPTGVGKTTTTAKLAARCVM-----RFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQL  208 (374)
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHHH-----hcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHH
Confidence            577899999999999999999999988652     233 588999876432  1233321              123444


Q ss_pred             HHhhCCCceEEEEcCCch
Q 036464          134 FVSEHKDVKVVIIDSIAF  151 (226)
Q Consensus       134 ~l~~~~~~~lvVIDsl~~  151 (226)
                      .+.+..+.++|+||....
T Consensus       209 ~l~~l~~~DlVLIDTaG~  226 (374)
T PRK14722        209 ALAELRNKHMVLIDTIGM  226 (374)
T ss_pred             HHHHhcCCCEEEEcCCCC
Confidence            555555789999999984

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=98.21  E-value=1.2e-05  Score=65.62  Aligned_cols=28  Identities=29%  Similarity=0.346  Sum_probs=25.5

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+.-++...
T Consensus        24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   51 (218)
T cd03290          24 IPTGQLTMIVGQVGCGKSSLLLAILGEM   51 (218)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            7899999999999999999998887664

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.21  E-value=3.2e-05  Score=66.96  Aligned_cols=41  Identities=27%  Similarity=0.194  Sum_probs=35.5

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL  118 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~  118 (226)
                      ++|.++.++||||+||||++..+|..+.      ..+++|+.++...
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~------~~g~~V~Li~~D~  152 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYK------AQGKKVLLAAGDT  152 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHH------hcCCeEEEEecCc
Confidence            4689999999999999999999999876      3577899998654

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.20  E-value=8.5e-06  Score=75.91  Aligned_cols=29  Identities=28%  Similarity=0.256  Sum_probs=24.6

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -++||+++.++||+|+||||++.=+.+-+
T Consensus       490 ti~pGe~vALVGPSGsGKSTiasLL~rfY  518 (716)
T KOG0058|consen  490 TIRPGEVVALVGPSGSGKSTIASLLLRFY  518 (716)
T ss_pred             eeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            48999999999999999999996554444

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=98.20  E-value=1e-05  Score=66.52  Aligned_cols=111  Identities=13%  Similarity=-0.038  Sum_probs=58.9

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccC---CCCCeEEEEe-----ccccCc-----hHHHHHHHHHHHHHhh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG---GLGGKAIYIG-----KCLGFY-----TEQSAVINYLDKFVSE  137 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~---~~~~~vlyi~-----~e~~~~-----~~~~~~l~~l~~~l~~  137 (226)
                      .+.++++.|+||+|+|||+++.+++....+-....   .....+-.++     ....+.     ..-......+...+..
T Consensus        27 ~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~~~~l~d~~~~~lS~~~~e~~~~a~il~~  106 (222)
T cd03285          27 RGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILARVGASDSQLKGVSTFMAEMLETAAILKS  106 (222)
T ss_pred             ecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEeeeccccchhcCcChHHHHHHHHHHHHHh
Confidence            45789999999999999999999886654311000   0000110111     000000     0011123344444543


Q ss_pred             CCCceEEEEcCC---chhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          138 HKDVKVVIIDSI---AFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       138 ~~~~~lvVIDsl---~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      ..++++|++|++   ++..+.        ....   ...++.+.++.+.++|++.|..
T Consensus       107 ~~~~sLvLLDEp~~gT~~lD~--------~~~~---~~il~~l~~~~~~~vlisTH~~  153 (222)
T cd03285         107 ATENSLIIIDELGRGTSTYDG--------FGLA---WAIAEYIATQIKCFCLFATHFH  153 (222)
T ss_pred             CCCCeEEEEecCcCCCChHHH--------HHHH---HHHHHHHHhcCCCeEEEEechH
Confidence            346899999999   433221        1111   1222444445688999999964

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.20  E-value=7e-06  Score=75.08  Aligned_cols=29  Identities=21%  Similarity=0.132  Sum_probs=25.4

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.|++|+|||||+..++...
T Consensus        20 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~   48 (491)
T PRK10982         20 KVRPHSIHALMGENGAGKSTLLKCLFGIY   48 (491)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            37899999999999999999998877643

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.20  E-value=8.5e-06  Score=71.55  Aligned_cols=44  Identities=18%  Similarity=0.157  Sum_probs=36.1

Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA  191 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~  191 (226)
                      .+|+++|-|++++.++..         ...+++..|+.+-+++|.+++++.|=
T Consensus       174 n~P~lLIADEPTTALDVt---------vQaQIL~Ll~~Lq~~~gMa~lfITHD  217 (534)
T COG4172         174 NEPDLLIADEPTTALDVT---------VQAQILDLLKELQAELGMAILFITHD  217 (534)
T ss_pred             CCCCeEeecCCcchhhhh---------hHHHHHHHHHHHHHHhCcEEEEEecc
Confidence            379999999999877442         22378889999999999999999884

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.19  E-value=1.2e-05  Score=66.93  Aligned_cols=28  Identities=25%  Similarity=0.253  Sum_probs=25.7

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+..++...
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247         26 IPDNTITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            7899999999999999999999888754

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.19  E-value=2.9e-05  Score=61.43  Aligned_cols=44  Identities=9%  Similarity=0.126  Sum_probs=34.9

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      .|+++.+|++++.+++         ..+.++++.++.+|.+-..-|++|+.+.
T Consensus       170 eP~vmLFDEPTSALDP---------ElVgEVLkv~~~LAeEgrTMv~VTHEM~  213 (256)
T COG4598         170 EPEVMLFDEPTSALDP---------ELVGEVLKVMQDLAEEGRTMVVVTHEMG  213 (256)
T ss_pred             CCceEeecCCcccCCH---------HHHHHHHHHHHHHHHhCCeEEEEeeehh
Confidence            6899999999987754         3466889999999988777777776653

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.19  E-value=0.00014  Score=65.50  Aligned_cols=74  Identities=20%  Similarity=0.176  Sum_probs=50.7

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc--hHHHHH------------------HHHHH
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY--TEQSAV------------------INYLD  132 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~--~~~~~~------------------l~~l~  132 (226)
                      +..++.++|++|+||||++..+|..+.      ..+.+|++++...+..  .+|+..                  ...+.
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~------~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~  167 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFK------KKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAK  167 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHH------HcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHH
Confidence            357899999999999999999998775      4577999998764322  222211                  12233


Q ss_pred             HHHhhCCCceEEEEcCCchh
Q 036464          133 KFVSEHKDVKVVIIDSIAFH  152 (226)
Q Consensus       133 ~~l~~~~~~~lvVIDsl~~l  152 (226)
                      +.++.....++||||....+
T Consensus       168 ~al~~~~~~DvVIIDTAGr~  187 (437)
T PRK00771        168 EGLEKFKKADVIIVDTAGRH  187 (437)
T ss_pred             HHHHHhhcCCEEEEECCCcc
Confidence            44443334599999999754

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.19  E-value=1.7e-05  Score=72.78  Aligned_cols=29  Identities=28%  Similarity=0.261  Sum_probs=25.8

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.|++|+|||||+..++...
T Consensus        26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   54 (501)
T PRK11288         26 DCRAGQVHALMGENGAGKSTLLKILSGNY   54 (501)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            48899999999999999999998877643

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.18  E-value=2e-05  Score=70.79  Aligned_cols=75  Identities=24%  Similarity=0.170  Sum_probs=53.1

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhc-cccccCCCCCeEEEEeccccCc--hHHHHH--------------HHHHHHH
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQ-IPVEFGGLGGKAIYIGKCLGFY--TEQSAV--------------INYLDKF  134 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~-lp~~~~~~~~~vlyi~~e~~~~--~~~~~~--------------l~~l~~~  134 (226)
                      ..|.++.|+||+|+||||++..+|..+. .     ..+.+|.+|++..+..  .+++..              ...+...
T Consensus       219 ~~~~~i~~vGptGvGKTTt~~kLA~~~~~~-----~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~  293 (424)
T PRK05703        219 KQGGVVALVGPTGVGKTTTLAKLAARYALL-----YGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKA  293 (424)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHh-----cCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHH
Confidence            3477999999999999999999998775 2     3467999999764221  122211              1344455


Q ss_pred             HhhCCCceEEEEcCCch
Q 036464          135 VSEHKDVKVVIIDSIAF  151 (226)
Q Consensus       135 l~~~~~~~lvVIDsl~~  151 (226)
                      +.+..+.++|+||....
T Consensus       294 l~~~~~~DlVlIDt~G~  310 (424)
T PRK05703        294 LEQLRDCDVILIDTAGR  310 (424)
T ss_pred             HHHhCCCCEEEEeCCCC
Confidence            55555789999999974

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.17  E-value=1.5e-05  Score=65.62  Aligned_cols=21  Identities=38%  Similarity=0.567  Sum_probs=20.3

Q ss_pred             CCCCeeEEEecCCCCChHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLG   91 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~   91 (226)
                      +++|+++.|+|++|+|||||+
T Consensus        18 i~~Ge~~~l~G~sGsGKSTL~   38 (226)
T cd03270          18 IPRNKLVVITGVSGSGKSSLA   38 (226)
T ss_pred             cCCCcEEEEEcCCCCCHHHHH
Confidence            899999999999999999997

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=98.17  E-value=1.3e-05  Score=66.66  Aligned_cols=29  Identities=34%  Similarity=0.340  Sum_probs=25.9

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+.+|+++.|.|++|+|||||+.-++...
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (248)
T PRK09580         23 EVRPGEVHAIMGPNGSGKSTLSATLAGRE   51 (248)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence            47899999999999999999998877753

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.17  E-value=1e-05  Score=76.08  Aligned_cols=45  Identities=16%  Similarity=0.129  Sum_probs=34.3

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++|+|++++.++..     .+    .+++..|+++++++|.+||++.|-..
T Consensus       186 ~P~lLllDEPt~~LD~~-----~~----~~l~~ll~~l~~~~g~tvi~itHdl~  230 (623)
T PRK10261        186 RPAVLIADEPTTALDVT-----IQ----AQILQLIKVLQKEMSMGVIFITHDMG  230 (623)
T ss_pred             CCCEEEEeCCCCccCHH-----HH----HHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence            79999999999876431     22    25667778888888999999988653

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=98.17  E-value=1.1e-05  Score=67.68  Aligned_cols=28  Identities=29%  Similarity=0.322  Sum_probs=25.5

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+.-++...
T Consensus        44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   71 (257)
T cd03288          44 IKPGQKVGICGRTGSGKSSLSLAFFRMV   71 (257)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHccc
Confidence            7899999999999999999998887754

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.17  E-value=1.3e-05  Score=67.28  Aligned_cols=47  Identities=11%  Similarity=0.115  Sum_probs=36.0

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN  195 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~  195 (226)
                      .|+++.+|++-+-++.     +.+    .+++--|.++.++.+++++.++|....+
T Consensus       146 ~P~LLLmDEPLaSLD~-----~RK----~EilpylERL~~e~~IPIlYVSHS~~Ev  192 (352)
T COG4148         146 APELLLMDEPLASLDL-----PRK----REILPYLERLRDEINIPILYVSHSLDEV  192 (352)
T ss_pred             CCCeeeecCchhhccc-----chh----hHHHHHHHHHHHhcCCCEEEEecCHHHH
Confidence            6899999999754422     222    2677788999999999999999987543

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=98.17  E-value=1.6e-05  Score=75.01  Aligned_cols=117  Identities=17%  Similarity=0.160  Sum_probs=71.6

Q ss_pred             hCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHH-----HHHHHHHHHHHhhCCCc
Q 036464           67 LGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-----SAVINYLDKFVSEHKDV  141 (226)
Q Consensus        67 l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~-----~~~l~~l~~~l~~~~~~  141 (226)
                      +++-+++|  +.|+||||+|||+++..++...-         .+.++++..  ++.+.     ...+..+-..... ..+
T Consensus       180 ~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~---------~~f~~is~~--~~~~~~~g~~~~~~~~~f~~a~~-~~P  245 (644)
T PRK10733        180 LGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK---------VPFFTISGS--DFVEMFVGVGASRVRDMFEQAKK-AAP  245 (644)
T ss_pred             cCCCCCCc--EEEECCCCCCHHHHHHHHHHHcC---------CCEEEEehH--HhHHhhhcccHHHHHHHHHHHHh-cCC
Confidence            34456667  89999999999999999987753         345666643  11111     1112222222233 367


Q ss_pred             eEEEEcCCchhhhcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464          142 KVVIIDSIAFHFRHGFV----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA  197 (226)
Q Consensus       142 ~lvVIDsl~~l~~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~  197 (226)
                      .+|+||++.++......    ....+.+.+++++..+..+....++.||.+......++.
T Consensus       246 ~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~  305 (644)
T PRK10733        246 CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDP  305 (644)
T ss_pred             cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCH
Confidence            99999999987643211    223455667777777777666667777755554444443

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=1.5e-05  Score=72.93  Aligned_cols=118  Identities=17%  Similarity=0.116  Sum_probs=75.4

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc---CchHHHHHHHHHHHHHhhCCCceEEEE
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG---FYTEQSAVINYLDKFVSEHKDVKVVII  146 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~---~~~~~~~~l~~l~~~l~~~~~~~lvVI  146 (226)
                      |+++...++++||||+|||.++..++...-         .+.+-++....   -..+.-..+..+-....+ ..+.+|+|
T Consensus       272 ~~~~~~giLl~GpPGtGKT~lAkava~~~~---------~~fi~v~~~~l~sk~vGesek~ir~~F~~A~~-~~p~iiFi  341 (494)
T COG0464         272 GLRPPKGVLLYGPPGTGKTLLAKAVALESR---------SRFISVKGSELLSKWVGESEKNIRELFEKARK-LAPSIIFI  341 (494)
T ss_pred             CCCCCCeeEEECCCCCCHHHHHHHHHhhCC---------CeEEEeeCHHHhccccchHHHHHHHHHHHHHc-CCCcEEEE
Confidence            678888899999999999999999998542         23444442210   011112233334333333 37899999


Q ss_pred             cCCchhhhcCcCCh-HHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464          147 DSIAFHFRHGFVDL-ALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA  197 (226)
Q Consensus       147 Dsl~~l~~~~~~~~-~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~  197 (226)
                      |++.+++....... ....+.+++++..+..+-...++.||.+.+.-...++
T Consensus       342 DEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~  393 (494)
T COG0464         342 DEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDP  393 (494)
T ss_pred             EchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCH
Confidence            99998886543321 1123566777777776677778887776666555554

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=1.3e-05  Score=75.06  Aligned_cols=110  Identities=17%  Similarity=0.159  Sum_probs=72.0

Q ss_pred             hhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH--------HHHHHHHHHHhh
Q 036464           66 ILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS--------AVINYLDKFVSE  137 (226)
Q Consensus        66 ~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~--------~~l~~l~~~l~~  137 (226)
                      +++-|+++.+=++++||||+|||.+|..+|.++.+           -|++-.   -+|.+        +.+..+-+-.++
T Consensus       697 LfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL-----------~FlSVK---GPELLNMYVGqSE~NVR~VFerAR~  762 (953)
T KOG0736|consen  697 LFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSL-----------NFLSVK---GPELLNMYVGQSEENVREVFERARS  762 (953)
T ss_pred             hhhccccccceeEEECCCCCchHHHHHHHHhhcee-----------eEEeec---CHHHHHHHhcchHHHHHHHHHHhhc
Confidence            45678998888999999999999999999999863           445421   12221        123333333333


Q ss_pred             CCCceEEEEcCCchhhhcCcC-----ChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          138 HKDVKVVIIDSIAFHFRHGFV-----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       138 ~~~~~lvVIDsl~~l~~~~~~-----~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      . .|.+|++|++.++....-.     ...  .+.+.+++..|..+.+...--|+++.-++
T Consensus       763 A-~PCVIFFDELDSlAP~RG~sGDSGGVM--DRVVSQLLAELDgls~~~s~~VFViGATN  819 (953)
T KOG0736|consen  763 A-APCVIFFDELDSLAPNRGRSGDSGGVM--DRVVSQLLAELDGLSDSSSQDVFVIGATN  819 (953)
T ss_pred             c-CCeEEEeccccccCccCCCCCCccccH--HHHHHHHHHHhhcccCCCCCceEEEecCC
Confidence            3 7999999999987654321     222  34577888888888864444444444333

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.16  E-value=2.5e-05  Score=63.18  Aligned_cols=39  Identities=28%  Similarity=0.274  Sum_probs=32.7

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      +++|++..|.||+|+|||||+..++-...      -..++|.|..
T Consensus        24 ~~pGev~ailGPNGAGKSTlLk~LsGel~------p~~G~v~~~g   62 (259)
T COG4559          24 LRPGEVLAILGPNGAGKSTLLKALSGELS------PDSGEVTLNG   62 (259)
T ss_pred             ccCCcEEEEECCCCccHHHHHHHhhCccC------CCCCeEeeCC
Confidence            89999999999999999999999998875      2345666654

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.16  E-value=1.4e-05  Score=66.61  Aligned_cols=29  Identities=24%  Similarity=0.193  Sum_probs=25.7

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+.+|+++.|.|++|+|||||+.-++...
T Consensus        26 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   54 (253)
T PRK14267         26 KIPQNGVFALMGPSGCGKSTLLRTFNRLL   54 (253)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            37899999999999999999998877654

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.16  E-value=1.6e-05  Score=66.77  Aligned_cols=29  Identities=31%  Similarity=0.210  Sum_probs=26.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +++|+++.|.|++|+|||||+..++....
T Consensus        30 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~   58 (261)
T PRK14258         30 IYQSKVTAIIGPSGCGKSTFLKCLNRMNE   58 (261)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcccC
Confidence            88999999999999999999988886643

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=98.15  E-value=1.3e-05  Score=65.44  Aligned_cols=28  Identities=36%  Similarity=0.341  Sum_probs=25.0

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.||+|+|||||+..++...
T Consensus        10 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~   37 (213)
T PRK15177         10 MGYHEHIGILAAPGSGKTTLTRLLCGLD   37 (213)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            7899999999999999999998877553

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.15  E-value=3.2e-05  Score=68.08  Aligned_cols=76  Identities=18%  Similarity=0.152  Sum_probs=53.4

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc--hHHHHH--------------HHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY--TEQSAV--------------INYLDKF  134 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~--~~~~~~--------------l~~l~~~  134 (226)
                      +.+|.++.|+||+|+||||++..+|....      ..+.+|.+|++..+..  .+|+..              -..+.+.
T Consensus       203 ~~~~~ii~lvGptGvGKTTt~akLA~~l~------~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~a  276 (407)
T PRK12726        203 LSNHRIISLIGQTGVGKTTTLVKLGWQLL------KQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEA  276 (407)
T ss_pred             ecCCeEEEEECCCCCCHHHHHHHHHHHHH------HcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHH
Confidence            56799999999999999999999998765      3577899999764332  233311              1223333


Q ss_pred             Hhh---CCCceEEEEcCCchh
Q 036464          135 VSE---HKDVKVVIIDSIAFH  152 (226)
Q Consensus       135 l~~---~~~~~lvVIDsl~~l  152 (226)
                      +..   ..+.++|+||.....
T Consensus       277 l~~l~~~~~~D~VLIDTAGr~  297 (407)
T PRK12726        277 VQYMTYVNCVDHILIDTVGRN  297 (407)
T ss_pred             HHHHHhcCCCCEEEEECCCCC
Confidence            322   136899999999854

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=98.15  E-value=1e-05  Score=75.33  Aligned_cols=29  Identities=31%  Similarity=0.190  Sum_probs=26.0

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +++|+.+.|+||+|+||||++.-+..-.-
T Consensus       352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~  380 (567)
T COG1132         352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYD  380 (567)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            89999999999999999999987776653

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.15  E-value=2.9e-05  Score=70.95  Aligned_cols=77  Identities=21%  Similarity=0.182  Sum_probs=54.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc--hHHHH--------------HHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY--TEQSA--------------VINYLDKF  134 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~--~~~~~--------------~l~~l~~~  134 (226)
                      +..|.++.|+|++|+||||++..++..+...    +.+.+|.+++...+..  .+++.              ....+.+.
T Consensus       347 l~~G~vIaLVGPtGvGKTTtaakLAa~la~~----~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~a  422 (559)
T PRK12727        347 LERGGVIALVGPTGAGKTTTIAKLAQRFAAQ----HAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDL  422 (559)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHHHHHHh----cCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHH
Confidence            5679999999999999999999999877521    2246898988653221  12221              12345556


Q ss_pred             HhhCCCceEEEEcCCch
Q 036464          135 VSEHKDVKVVIIDSIAF  151 (226)
Q Consensus       135 l~~~~~~~lvVIDsl~~  151 (226)
                      +++..+.++||||....
T Consensus       423 L~~l~~~DLVLIDTaG~  439 (559)
T PRK12727        423 LERLRDYKLVLIDTAGM  439 (559)
T ss_pred             HHHhccCCEEEecCCCc
Confidence            65555789999999984

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=98.15  E-value=4.3e-05  Score=64.43  Aligned_cols=30  Identities=27%  Similarity=0.196  Sum_probs=26.7

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      -+++|+++.|.|++|+|||||+.-++....
T Consensus        41 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   70 (267)
T PRK14235         41 DIPEKTVTAFIGPSGCGKSTFLRCLNRMND   70 (267)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            378999999999999999999998887653

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.15  E-value=2.2e-05  Score=72.03  Aligned_cols=29  Identities=24%  Similarity=0.283  Sum_probs=25.7

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+.+|+++.|.||+|+|||||+..++...
T Consensus        27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (506)
T PRK13549         27 KVRAGEIVSLCGENGAGKSTLMKVLSGVY   55 (506)
T ss_pred             EEeCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999998887644

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.15  E-value=2.8e-05  Score=71.84  Aligned_cols=45  Identities=16%  Similarity=0.164  Sum_probs=33.8

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++.++.     ..    ...+.+.|++++++++.+||++.|-..
T Consensus       174 ~p~llllDEPt~~LD~-----~~----~~~l~~~l~~l~~~~g~tvi~vtHd~~  218 (529)
T PRK15134        174 RPELLIADEPTTALDV-----SV----QAQILQLLRELQQELNMGLLFITHNLS  218 (529)
T ss_pred             CCCEEEEcCCCCccCH-----HH----HHHHHHHHHHHHHhcCCeEEEEcCcHH
Confidence            7999999999986643     12    235667777887777899988888754

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=98.14  E-value=1.3e-05  Score=72.01  Aligned_cols=28  Identities=29%  Similarity=0.235  Sum_probs=24.8

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+|+...|.||+|+|||||+.-+....
T Consensus       359 l~~G~~lgIIGPSgSGKSTLaR~lvG~w  386 (580)
T COG4618         359 LQAGEALGIIGPSGSGKSTLARLLVGIW  386 (580)
T ss_pred             ecCCceEEEECCCCccHHHHHHHHHccc
Confidence            7899999999999999999998776554

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.14  E-value=1.8e-05  Score=66.07  Aligned_cols=29  Identities=24%  Similarity=0.170  Sum_probs=25.8

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.|++|+|||||+..++...
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   57 (254)
T PRK14273         29 KILKNSITALIGPSGCGKSTFLRTLNRMN   57 (254)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            37899999999999999999998887654

>PLN03130 ABC transporter C family member; Provisional

Probab=98.14  E-value=7.6e-06  Score=84.26  Aligned_cols=40  Identities=30%  Similarity=0.243  Sum_probs=31.5

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK  116 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~  116 (226)
                      -+++|+.+.|+|++|+|||||+.-+.+-+-       ...+-++||+
T Consensus      1261 ~I~~GekVaIVGrSGSGKSTLl~lL~rl~~-------p~~G~I~IDG 1300 (1622)
T PLN03130       1261 EISPSEKVGIVGRTGAGKSSMLNALFRIVE-------LERGRILIDG 1300 (1622)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhCcCC-------CCCceEEECC
Confidence            389999999999999999999988877653       3344566663

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.14  E-value=1.9e-05  Score=61.99  Aligned_cols=45  Identities=16%  Similarity=0.067  Sum_probs=33.5

Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      ..|++++-|+++.-++..         -=.++...|-.+.+++|.|.|++.|=.
T Consensus       163 ~~P~vLfADEPTGNLD~~---------Tg~~iaDLlF~lnre~G~TlVlVTHD~  207 (228)
T COG4181         163 GRPDVLFADEPTGNLDRA---------TGDKIADLLFALNRERGTTLVLVTHDP  207 (228)
T ss_pred             CCCCEEeccCCCCCcchh---------HHHHHHHHHHHHhhhcCceEEEEeCCH
Confidence            479999999999644321         112567777888899999999988854

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.14  E-value=1.6e-05  Score=66.08  Aligned_cols=29  Identities=31%  Similarity=0.261  Sum_probs=25.6

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.|++|+|||||+.-++...
T Consensus        23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (247)
T TIGR00972        23 DIPKNQVTALIGPSGCGKSTLLRSLNRMN   51 (247)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            38899999999999999999998877554

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.13  E-value=1.6e-05  Score=66.27  Aligned_cols=28  Identities=32%  Similarity=0.290  Sum_probs=25.3

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+|+++.|.|++|+|||||+.-++...
T Consensus        27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14249         27 FPERQITAIIGPSGCGKSTLLRALNRMN   54 (251)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            7899999999999999999998887653

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=98.13  E-value=1.7e-05  Score=67.03  Aligned_cols=89  Identities=19%  Similarity=0.289  Sum_probs=51.1

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-------c-Cch-H-HH--HHHHHHHHHHhhCCCceE
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-------G-FYT-E-QS--AVINYLDKFVSEHKDVKV  143 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-------~-~~~-~-~~--~~l~~l~~~l~~~~~~~l  143 (226)
                      +++|+|-||||||++|.++.....      ..+.+|.+++.+.       + +.. + ..  .+...+++.+..   -.+
T Consensus         3 Liil~G~P~SGKTt~a~~L~~~~~------~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~---~~i   73 (270)
T PF08433_consen    3 LIILCGLPCSGKTTRAKELKKYLE------EKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSK---DTI   73 (270)
T ss_dssp             EEEEE--TTSSHHHHHHHHHHHHH------HTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT----SE
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHH------hcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhcc---CeE
Confidence            689999999999999999998875      3667899998542       1 111 1 11  233455555553   389


Q ss_pred             EEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEe
Q 036464          144 VIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEP  188 (226)
Q Consensus       144 vVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~  188 (226)
                      ||+|+...+ +              .+=..|-.+|++++++..++
T Consensus        74 VI~Dd~nYi-K--------------g~RYelyclAr~~~~~~c~i  103 (270)
T PF08433_consen   74 VILDDNNYI-K--------------GMRYELYCLARAYGTTFCVI  103 (270)
T ss_dssp             EEE-S---S-H--------------HHHHHHHHHHHHTT-EEEEE
T ss_pred             EEEeCCchH-H--------------HHHHHHHHHHHHcCCCEEEE
Confidence            999999732 2              12236667888888766544

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=98.13  E-value=1.3e-05  Score=65.73  Aligned_cols=114  Identities=13%  Similarity=-0.014  Sum_probs=65.4

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccC---CCCCeEE-----EEeccccCc-----hHHHHHHHHHHHHHhh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG---GLGGKAI-----YIGKCLGFY-----TEQSAVINYLDKFVSE  137 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~---~~~~~vl-----yi~~e~~~~-----~~~~~~l~~l~~~l~~  137 (226)
                      ..+|+++.|+||+++|||+++..++..+.+-....   ....++-     |......+.     ..-...+.++..+++.
T Consensus        27 ~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~il~~  106 (218)
T cd03286          27 ATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIGARDDIMKGESTFMVELSETANILRH  106 (218)
T ss_pred             ecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecCcccccccCcchHHHHHHHHHHHHHh
Confidence            45688999999999999999999888765311000   0011111     111100000     0111235666677776


Q ss_pred             CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHH-HHHHHHHcCCEEEEeccccc
Q 036464          138 HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALK-LMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       138 ~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~-L~~la~~~~~~vi~~nq~~~  193 (226)
                      ..+.++|+||++..-...     .++.    .+... ++.+.+..++++|++.|-..
T Consensus       107 ~~~~sLvLlDE~~~Gt~~-----~dg~----~la~ail~~L~~~~~~~~i~~TH~~e  154 (218)
T cd03286         107 ATPDSLVILDELGRGTST-----HDGY----AIAHAVLEYLVKKVKCLTLFSTHYHS  154 (218)
T ss_pred             CCCCeEEEEecccCCCCc-----hHHH----HHHHHHHHHHHHhcCCcEEEEeccHH
Confidence            567899999999753322     1222    22233 44555445888888888653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.13  E-value=3.3e-05  Score=68.79  Aligned_cols=115  Identities=19%  Similarity=0.110  Sum_probs=72.0

Q ss_pred             CCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEE----EeccccC-------------chH-----H-
Q 036464           68 GGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY----IGKCLGF-------------YTE-----Q-  124 (226)
Q Consensus        68 ~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vly----i~~e~~~-------------~~~-----~-  124 (226)
                      +|.+..|+++.+.||+|.|||||+.-+|..+ .|.+.+..+-+|-|    |..+...             +..     . 
T Consensus       361 ~G~i~~gEvigilGpNgiGKTTFvk~LAG~i-kPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei  439 (591)
T COG1245         361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVI-KPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEI  439 (591)
T ss_pred             CCeeecceEEEEECCCCcchHHHHHHHhccc-cCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhh
Confidence            3779999999999999999999998777554 34332222333333    3322100             000     0 


Q ss_pred             ---HH---------------HHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEE
Q 036464          125 ---SA---------------VINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALL  186 (226)
Q Consensus       125 ---~~---------------~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi  186 (226)
                         +.               -++.+.-.+.-....++.++|+++++++.+     .|.    .+.+.+++++...+.+.+
T Consensus       440 ~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvE-----qR~----~vakvIRR~~e~~~kta~  510 (591)
T COG1245         440 VKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVE-----QRI----IVAKVIRRFIENNEKTAL  510 (591)
T ss_pred             cCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHH-----HHH----HHHHHHHHHHhhcCceEE
Confidence               00               012221111112368999999999887442     333    567889999999999999


Q ss_pred             Eecccc
Q 036464          187 EPNLAT  192 (226)
Q Consensus       187 ~~nq~~  192 (226)
                      ++.|=-
T Consensus       511 vVdHDi  516 (591)
T COG1245         511 VVDHDI  516 (591)
T ss_pred             EEecce
Confidence            998853

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.12  E-value=4.2e-05  Score=63.59  Aligned_cols=28  Identities=21%  Similarity=0.219  Sum_probs=25.3

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+|+++.|+|++|+|||||+.-++...
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (246)
T PRK14269         25 IEQNKITALIGASGCGKSTFLRCFNRMN   52 (246)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            7899999999999999999999888653

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=98.12  E-value=1.4e-05  Score=81.70  Aligned_cols=29  Identities=24%  Similarity=0.232  Sum_probs=26.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +++|+.+.|+|++|+||||++.-++.-+.
T Consensus      1191 i~~G~~vAIVG~SGsGKSTl~~LL~r~yd 1219 (1466)
T PTZ00265       1191 CDSKKTTAIVGETGSGKSTVMSLLMRFYD 1219 (1466)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence            88999999999999999999987777664

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.12  E-value=9.6e-06  Score=66.86  Aligned_cols=49  Identities=8%  Similarity=0.054  Sum_probs=33.5

Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA  197 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~  197 (226)
                      ++|++||+|++-+-+++.      ..+.+......    .++.|.|||+.+|....++.
T Consensus       147 HePeLlILDEPFSGLDPV------N~elLk~~I~~----lk~~GatIifSsH~Me~vEe  195 (300)
T COG4152         147 HEPELLILDEPFSGLDPV------NVELLKDAIFE----LKEEGATIIFSSHRMEHVEE  195 (300)
T ss_pred             cCCCEEEecCCccCCChh------hHHHHHHHHHH----HHhcCCEEEEecchHHHHHH
Confidence            479999999998665432      22233333333    35689999999999876654

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.12  E-value=3.2e-05  Score=71.39  Aligned_cols=46  Identities=20%  Similarity=0.192  Sum_probs=34.7

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      +++++++|++++.++.     ..    ...+...|++++++++.+||+++|-...
T Consensus       443 ~p~llllDEPt~~LD~-----~~----~~~l~~~l~~~~~~~~~tvi~vsHd~~~  488 (529)
T PRK15134        443 KPSLIILDEPTSSLDK-----TV----QAQILALLKSLQQKHQLAYLFISHDLHV  488 (529)
T ss_pred             CCCEEEeeCCccccCH-----HH----HHHHHHHHHHHHHhhCCEEEEEeCCHHH
Confidence            7999999999976633     12    2366777888888889999988887643

>CHL00181 cbbX CbbX; Provisional

Probab=98.12  E-value=2e-05  Score=67.29  Aligned_cols=108  Identities=14%  Similarity=0.119  Sum_probs=59.5

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCC-CCCeEEEEeccccCchHHH--HHHHHHHHHHhhCCCceEEEEcCC
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG-LGGKAIYIGKCLGFYTEQS--AVINYLDKFVSEHKDVKVVIIDSI  149 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~-~~~~vlyi~~e~~~~~~~~--~~l~~l~~~l~~~~~~~lvVIDsl  149 (226)
                      +|-.+.|.||||+|||++|..++..+..   .+- ..+++++++..  ......  .........+++. ...+++||++
T Consensus        58 ~~~~ill~G~pGtGKT~lAr~la~~~~~---~g~~~~~~~~~v~~~--~l~~~~~g~~~~~~~~~l~~a-~ggVLfIDE~  131 (287)
T CHL00181         58 PGLHMSFTGSPGTGKTTVALKMADILYK---LGYIKKGHLLTVTRD--DLVGQYIGHTAPKTKEVLKKA-MGGVLFIDEA  131 (287)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHH---cCCCCCCceEEecHH--HHHHHHhccchHHHHHHHHHc-cCCEEEEEcc
Confidence            4556899999999999999999887531   011 23457777633  111111  0112334555554 3479999999


Q ss_pred             chhhhcCcCChHHHHHHHHHHHHHHHHHHHH--cCCEEEEeccc
Q 036464          150 AFHFRHGFVDLALRTRVLSGIALKLMNLAKK--FSLALLEPNLA  191 (226)
Q Consensus       150 ~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~--~~~~vi~~nq~  191 (226)
                      ..+...+..... ..    +....|.++..+  .++.||+++..
T Consensus       132 ~~l~~~~~~~~~-~~----e~~~~L~~~me~~~~~~~vI~ag~~  170 (287)
T CHL00181        132 YYLYKPDNERDY-GS----EAIEILLQVMENQRDDLVVIFAGYK  170 (287)
T ss_pred             chhccCCCccch-HH----HHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            987543211111 11    223333333322  45677777653

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=98.11  E-value=2.2e-05  Score=65.53  Aligned_cols=28  Identities=25%  Similarity=0.194  Sum_probs=25.5

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+.-++...
T Consensus        29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14242         29 FEQNQVTALIGPSGCGKSTFLRCLNRMN   56 (253)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            7899999999999999999999888653

>PLN03232 ABC transporter C family member; Provisional

Probab=98.11  E-value=9.5e-06  Score=83.14  Aligned_cols=28  Identities=25%  Similarity=0.226  Sum_probs=25.6

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+.+.|+|++|+|||||+.-+..-+
T Consensus      1259 I~~GekvaIVG~SGSGKSTL~~lL~rl~ 1286 (1495)
T PLN03232       1259 VSPSEKVGVVGRTGAGKSSMLNALFRIV 1286 (1495)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999998887765

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=1.6e-05  Score=72.50  Aligned_cols=28  Identities=29%  Similarity=0.305  Sum_probs=24.6

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+.+.|+|++|+||||+..-++.-.
T Consensus       344 ~~~g~~talvG~SGaGKSTLl~lL~G~~  371 (559)
T COG4988         344 IKAGQLTALVGASGAGKSTLLNLLLGFL  371 (559)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHhCcC
Confidence            8999999999999999999997666544

>PF05729 NACHT: NACHT domain

Probab=98.10  E-value=4.1e-05  Score=58.88  Aligned_cols=115  Identities=17%  Similarity=0.096  Sum_probs=58.2

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------CchHHHH--------HHH-HHHHHHhhC
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-------FYTEQSA--------VIN-YLDKFVSEH  138 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-------~~~~~~~--------~l~-~l~~~l~~~  138 (226)
                      +++.|.|+||+|||+++..++............-.-++|+.....       ...+.+.        ... .+...+. .
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~   79 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLE-K   79 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHH-c
Confidence            368899999999999999999888631110000012344443211       1111110        011 1222333 3


Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      .+.-++|||.+..+......  ..+ .....++..+.....-.++.++++.....
T Consensus        80 ~~~~llilDglDE~~~~~~~--~~~-~~~~~~l~~l~~~~~~~~~~liit~r~~~  131 (166)
T PF05729_consen   80 NKRVLLILDGLDELEEQDQS--QER-QRLLDLLSQLLPQALPPGVKLIITSRPRA  131 (166)
T ss_pred             CCceEEEEechHhcccchhh--hHH-HHHHHHHHHHhhhccCCCCeEEEEEcCCh
Confidence            35678999999976542211  111 12223333333322236788888765543

>PLN03211 ABC transporter G-25; Provisional

Probab=98.10  E-value=1.2e-05  Score=75.99  Aligned_cols=30  Identities=30%  Similarity=0.303  Sum_probs=26.7

Q ss_pred             CCCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +-+++|+++.|.||+|+|||||+.-++...
T Consensus        89 ~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~  118 (659)
T PLN03211         89 GMASPGEILAVLGPSGSGKSTLLNALAGRI  118 (659)
T ss_pred             EEEECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence            469999999999999999999998887654

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=98.10  E-value=5.5e-05  Score=62.99  Aligned_cols=28  Identities=29%  Similarity=0.251  Sum_probs=25.4

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+.-++...
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14240         26 IEENQVTALIGPSGCGKSTFLRTLNRMN   53 (250)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            7899999999999999999999888643

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.09  E-value=2.4e-05  Score=65.59  Aligned_cols=29  Identities=28%  Similarity=0.178  Sum_probs=25.8

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.|++|+|||||+..++...
T Consensus        34 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~   62 (258)
T PRK14268         34 QIPKNSVTALIGPSGCGKSTFIRCLNRMN   62 (258)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            37899999999999999999998887643

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=98.09  E-value=3.5e-05  Score=65.65  Aligned_cols=76  Identities=17%  Similarity=0.155  Sum_probs=46.6

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH--HHHHHHHHHHhhCCCceEEEEcCCch
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS--AVINYLDKFVSEHKDVKVVIIDSIAF  151 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~--~~l~~l~~~l~~~~~~~lvVIDsl~~  151 (226)
                      +.-+.|.||||+|||++|..++..+...  .....+++++++..  .....+  .....+.+.+++. ...+++||++..
T Consensus        58 ~~~vll~G~pGTGKT~lA~~ia~~l~~~--g~~~~~~~v~v~~~--~l~~~~~g~~~~~~~~~~~~a-~~gvL~iDEi~~  132 (284)
T TIGR02880        58 TLHMSFTGNPGTGKTTVALRMAQILHRL--GYVRKGHLVSVTRD--DLVGQYIGHTAPKTKEILKRA-MGGVLFIDEAYY  132 (284)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHHHHc--CCcccceEEEecHH--HHhHhhcccchHHHHHHHHHc-cCcEEEEechhh
Confidence            4468999999999999998888776410  00123467777743  111100  0112344556554 348999999997


Q ss_pred             hhh
Q 036464          152 HFR  154 (226)
Q Consensus       152 l~~  154 (226)
                      +..
T Consensus       133 L~~  135 (284)
T TIGR02880       133 LYR  135 (284)
T ss_pred             hcc
Confidence            653

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.08  E-value=6e-05  Score=62.76  Aligned_cols=28  Identities=32%  Similarity=0.248  Sum_probs=25.2

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      -+++|+++.|.|++|+|||||+.-++..
T Consensus        25 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl   52 (250)
T PRK14262         25 KIFKNQITAIIGPSGCGKTTLLRSINRM   52 (250)
T ss_pred             eecCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            4789999999999999999999888754

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=98.08  E-value=2.4e-05  Score=65.23  Aligned_cols=28  Identities=32%  Similarity=0.380  Sum_probs=25.2

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      -+++|+++.|.|++|+|||||+.-++..
T Consensus        29 ~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl   56 (252)
T CHL00131         29 SINKGEIHAIMGPNGSGKSTLSKVIAGH   56 (252)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence            3789999999999999999999877764

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.08  E-value=6.9e-05  Score=63.48  Aligned_cols=41  Identities=24%  Similarity=0.242  Sum_probs=35.2

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL  118 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~  118 (226)
                      .++.++.++|++|+||||.+..+|..+.      ..+.+|+.+++..
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~------~~g~~V~li~~D~  110 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKLK------KQGKSVLLAAGDT  110 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHH------hcCCEEEEEeCCC
Confidence            3468999999999999999999998876      4678999999764

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.08  E-value=5.2e-05  Score=69.87  Aligned_cols=47  Identities=6%  Similarity=0.094  Sum_probs=35.5

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN  195 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~  195 (226)
                      +++++++|++++.++.     ..    ...+.+.|++++++++.+||+++|-....
T Consensus       445 ~p~lLllDEPt~~LD~-----~~----~~~l~~~l~~l~~~~g~tvi~vsHd~~~~  491 (520)
T TIGR03269       445 EPRIVILDEPTGTMDP-----IT----KVDVTHSILKAREEMEQTFIIVSHDMDFV  491 (520)
T ss_pred             CCCEEEEeCCcccCCH-----HH----HHHHHHHHHHHHHHcCcEEEEEeCCHHHH
Confidence            7999999999976633     12    23667778888888899999998876543

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=98.08  E-value=2.3e-05  Score=66.75  Aligned_cols=28  Identities=32%  Similarity=0.367  Sum_probs=25.3

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+..++...
T Consensus        60 i~~Ge~~~liG~NGsGKSTLl~~I~Gl~   87 (282)
T cd03291          60 IEKGEMLAITGSTGSGKTSLLMLILGEL   87 (282)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999998877654

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=98.08  E-value=8.7e-05  Score=58.89  Aligned_cols=107  Identities=12%  Similarity=0.059  Sum_probs=57.8

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhcccccc-------------CCCCCeEEEEecc----cc----------CchHHHHHH
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEF-------------GGLGGKAIYIGKC----LG----------FYTEQSAVI  128 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~-------------~~~~~~vlyi~~e----~~----------~~~~~~~~l  128 (226)
                      ++.|+||+|+|||.+.-.++.........             ...+....+|.-+    .+          .+..+. ..
T Consensus        24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~LS~Ge~-~r  102 (178)
T cd03239          24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQGKVEQILSGGEK-SL  102 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecCCcCcccCCHHHH-HH
Confidence            89999999999999987776554311000             0111111122111    00          011111 12


Q ss_pred             HHHHHHHhh--CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          129 NYLDKFVSE--HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       129 ~~l~~~l~~--~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      -.+...+..  ..+++++++|++.+.++..     .    ...+.+.|+++++ .+.++|++.|-..
T Consensus       103 ~~Laral~~~~~~~p~llilDEp~~~LD~~-----~----~~~i~~~L~~~~~-~g~tiIiiSH~~~  159 (178)
T cd03239         103 SALALIFALQEIKPSPFYVLDEIDAALDPT-----N----RRRVSDMIKEMAK-HTSQFIVITLKKE  159 (178)
T ss_pred             HHHHHHHHHhcCCCCCEEEEECCCCCCCHH-----H----HHHHHHHHHHHHh-CCCEEEEEECCHH
Confidence            223333321  2468999999999765331     1    2245566666664 4789998888654

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=98.07  E-value=1.4e-05  Score=75.19  Aligned_cols=30  Identities=33%  Similarity=0.317  Sum_probs=27.1

Q ss_pred             CCCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +-+++|+++.|.||+|+|||||+..++...
T Consensus        46 ~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~   75 (617)
T TIGR00955        46 GVAKPGELLAVMGSSGAGKTTLMNALAFRS   75 (617)
T ss_pred             EEEeCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            569999999999999999999998887654

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=8.8e-06  Score=75.12  Aligned_cols=108  Identities=18%  Similarity=0.177  Sum_probs=69.4

Q ss_pred             hCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHH--HHHHHHHHhhC--CCce
Q 036464           67 LGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV--INYLDKFVSEH--KDVK  142 (226)
Q Consensus        67 l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~--l~~l~~~l~~~--~~~~  142 (226)
                      +|+-+|+|  +.++||||+|||.|+..+|...-.         +-.++++.  ++.+..--  ...++++..+.  ..+.
T Consensus       178 lGakiPkG--vlLvGpPGTGKTLLAkAvAgEA~V---------PFf~iSGS--~FVemfVGvGAsRVRdLF~qAkk~aP~  244 (596)
T COG0465         178 LGAKIPKG--VLLVGPPGTGKTLLAKAVAGEAGV---------PFFSISGS--DFVEMFVGVGASRVRDLFEQAKKNAPC  244 (596)
T ss_pred             cccccccc--eeEecCCCCCcHHHHHHHhcccCC---------Cceeccch--hhhhhhcCCCcHHHHHHHHHhhccCCC
Confidence            35567888  899999999999999999877643         23444433  44444300  12333333321  2479


Q ss_pred             EEEEcCCchhhhcCc----CChHHHHHHHHHHHHHHHHHHHHcCCEEEE
Q 036464          143 VVIIDSIAFHFRHGF----VDLALRTRVLSGIALKLMNLAKKFSLALLE  187 (226)
Q Consensus       143 lvVIDsl~~l~~~~~----~~~~~r~~~l~~~~~~L~~la~~~~~~vi~  187 (226)
                      +|+||++.+.-+..-    ....+|.+-+++++..+..+-...++.|+.
T Consensus       245 IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gvivia  293 (596)
T COG0465         245 IIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIA  293 (596)
T ss_pred             eEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEe
Confidence            999999998766542    134578888888888888776434444443

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.07  E-value=6.7e-05  Score=66.41  Aligned_cols=74  Identities=18%  Similarity=0.207  Sum_probs=50.7

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC--chHHHHH--------------HHHHHHHHh-
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF--YTEQSAV--------------INYLDKFVS-  136 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~--~~~~~~~--------------l~~l~~~l~-  136 (226)
                      ..++.|+||+|+||||++..+|....      ..+.+|.++++..+.  ..+|+..              -..+.+.+. 
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~------~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~  314 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFH------GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTY  314 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHH------HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHH
Confidence            46899999999999999999998875      467789999976432  2223211              122333332 


Q ss_pred             --hCCCceEEEEcCCchhh
Q 036464          137 --EHKDVKVVIIDSIAFHF  153 (226)
Q Consensus       137 --~~~~~~lvVIDsl~~l~  153 (226)
                        +..+.++|+||......
T Consensus       315 lk~~~~~DvVLIDTaGRs~  333 (436)
T PRK11889        315 FKEEARVDYILIDTAGKNY  333 (436)
T ss_pred             HHhccCCCEEEEeCccccC
Confidence              22258999999998543

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.07  E-value=3.5e-05  Score=64.10  Aligned_cols=28  Identities=36%  Similarity=0.330  Sum_probs=25.5

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+|+++.|.|++|+|||||+.-++...
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (249)
T PRK14253         26 IPARQVTALIGPSGCGKSTLLRCLNRMN   53 (249)
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            7899999999999999999999887654

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=98.06  E-value=1.4e-05  Score=82.10  Aligned_cols=39  Identities=28%  Similarity=0.235  Sum_probs=31.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK  116 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~  116 (226)
                      +++|+.+.|+|++|+|||||+.-+.+-+-       ...+-++||+
T Consensus      1309 I~~GekiaIVGrTGsGKSTL~~lL~rl~~-------~~~G~I~IdG 1347 (1522)
T TIGR00957      1309 IHGGEKVGIVGRTGAGKSSLTLGLFRINE-------SAEGEIIIDG 1347 (1522)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCcc-------CCCCeEEECC
Confidence            88999999999999999999988877653       3344566663

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.06  E-value=2.4e-05  Score=65.67  Aligned_cols=28  Identities=29%  Similarity=0.249  Sum_probs=25.3

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+|+++.|.|++|+|||||+.-++...
T Consensus        33 i~~Ge~~~i~G~nGsGKSTLl~~iaG~~   60 (257)
T PRK14246         33 IPNNSIFGIMGPSGSGKSTLLKVLNRLI   60 (257)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999998887654

>PRK13409 putative ATPase RIL; Provisional

Probab=98.06  E-value=2.6e-05  Score=72.97  Aligned_cols=29  Identities=34%  Similarity=0.192  Sum_probs=25.4

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      =+++|+++.|.||+|+|||||+.-++...
T Consensus        95 ~i~~Gev~gLvG~NGaGKSTLlkiL~G~l  123 (590)
T PRK13409         95 IPKEGKVTGILGPNGIGKTTAVKILSGEL  123 (590)
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            37899999999999999999998777643

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=98.06  E-value=3.9e-05  Score=66.60  Aligned_cols=45  Identities=13%  Similarity=0.283  Sum_probs=33.4

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++-++.     ..+    ..+...|+++.++.+.++|++.|-..
T Consensus       118 ~p~lllLDEP~s~LD~-----~~~----~~l~~~l~~l~~~~g~tiiivTHd~~  162 (325)
T TIGR01187       118 KPKILLLDEPLSALDK-----KLR----DQMQLELKTIQEQLGITFVFVTHDQE  162 (325)
T ss_pred             CCCEEEEeCCCccCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            6899999999976633     122    25666777888888999998888653

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.06  E-value=1.7e-05  Score=72.95  Aligned_cols=108  Identities=21%  Similarity=0.167  Sum_probs=68.6

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccc---cCCCCCeEEEEeccccC--------------c---hHH-H-HH
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVE---FGGLGGKAIYIGKCLGF--------------Y---TEQ-S-AV  127 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~---~~~~~~~vlyi~~e~~~--------------~---~~~-~-~~  127 (226)
                      .+.+|+-+.|.||+|+|||||+.-++.... |..   ..+.+-++-|++-+...              +   .++ + ..
T Consensus       344 ~i~~g~riaiiG~NG~GKSTLlk~l~g~~~-~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~  422 (530)
T COG0488         344 RIDRGDRIAIVGPNGAGKSTLLKLLAGELG-PLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAY  422 (530)
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHhhhcc-cCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHH
Confidence            588999999999999999999988865543 110   01334678888844200              0   000 0 00


Q ss_pred             H------------------------HHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCC
Q 036464          128 I------------------------NYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSL  183 (226)
Q Consensus       128 l------------------------~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~  183 (226)
                      +                        -.+..++  ..++.++|+|+++++++.             .-...|.....+|.=
T Consensus       423 L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll--~~~pNvLiLDEPTNhLDi-------------~s~~aLe~aL~~f~G  487 (530)
T COG0488         423 LGRFGFTGEDQEKPVGVLSGGEKARLLLAKLL--LQPPNLLLLDEPTNHLDI-------------ESLEALEEALLDFEG  487 (530)
T ss_pred             HHHcCCChHHHhCchhhcCHhHHHHHHHHHHh--ccCCCEEEEcCCCccCCH-------------HHHHHHHHHHHhCCC
Confidence            0                        0111222  237899999999988743             123466666678999


Q ss_pred             EEEEeccccc
Q 036464          184 ALLEPNLATT  193 (226)
Q Consensus       184 ~vi~~nq~~~  193 (226)
                      +||+++|=+.
T Consensus       488 tvl~VSHDr~  497 (530)
T COG0488         488 TVLLVSHDRY  497 (530)
T ss_pred             eEEEEeCCHH
Confidence            9999999653

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=98.06  E-value=1.3e-05  Score=65.61  Aligned_cols=62  Identities=21%  Similarity=0.143  Sum_probs=38.0

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCchh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFH  152 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l  152 (226)
                      -+.++||||+||||||.-+|...-         .+..++++....-      ..++...+.+..+-++++||+++.+
T Consensus        52 h~lf~GPPG~GKTTLA~IIA~e~~---------~~~~~~sg~~i~k------~~dl~~il~~l~~~~ILFIDEIHRl  113 (233)
T PF05496_consen   52 HMLFYGPPGLGKTTLARIIANELG---------VNFKITSGPAIEK------AGDLAAILTNLKEGDILFIDEIHRL  113 (233)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHCT-----------EEEEECCC--S------CHHHHHHHHT--TT-EEEECTCCC-
T ss_pred             eEEEECCCccchhHHHHHHHhccC---------CCeEeccchhhhh------HHHHHHHHHhcCCCcEEEEechhhc
Confidence            578999999999999998888863         3455666531111      1222333333335689999999964

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.06  E-value=3.2e-05  Score=64.43  Aligned_cols=29  Identities=21%  Similarity=0.179  Sum_probs=25.9

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+.+|+++.|.|++|+|||||+.-++...
T Consensus        26 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   54 (252)
T PRK14272         26 DVQRGTVNALIGPSGCGKTTFLRAINRMH   54 (252)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            37899999999999999999998887654

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.05  E-value=3.3e-05  Score=64.33  Aligned_cols=28  Identities=25%  Similarity=0.219  Sum_probs=25.7

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+.-++...
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14251         27 FEEKELTALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            7899999999999999999999888754

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.05  E-value=8.8e-05  Score=61.81  Aligned_cols=28  Identities=25%  Similarity=0.175  Sum_probs=25.6

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+.-++...
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   54 (251)
T PRK14270         27 IYENKITALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            7899999999999999999999888654

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=98.05  E-value=3.3e-05  Score=64.82  Aligned_cols=29  Identities=28%  Similarity=0.252  Sum_probs=26.1

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.|++|+|||||+.-++...
T Consensus        35 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         35 DIAKNQVTAFIGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            38899999999999999999999887654

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.05  E-value=8.9e-05  Score=62.11  Aligned_cols=28  Identities=36%  Similarity=0.388  Sum_probs=25.6

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+.-++...
T Consensus        35 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   62 (259)
T PRK14274         35 IPENEVTAIIGPSGCGKSTFIKTLNLMI   62 (259)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            7899999999999999999999888654

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.05  E-value=2.7e-05  Score=67.77  Aligned_cols=29  Identities=28%  Similarity=0.227  Sum_probs=26.3

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|+|++|+|||+|+..++...
T Consensus       104 ~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~  132 (329)
T PRK14257        104 DIKRNKVTAFIGPSGCGKSTFLRNLNQLN  132 (329)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            38999999999999999999999888665

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.05  E-value=3.6e-05  Score=64.83  Aligned_cols=28  Identities=25%  Similarity=0.224  Sum_probs=25.4

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+|+++.|.|++|+|||||+.-++...
T Consensus        44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   71 (268)
T PRK14248         44 IEKHAVTALIGPSGCGKSTFLRSINRMN   71 (268)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            7899999999999999999998887643

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=98.05  E-value=3.2e-05  Score=80.71  Aligned_cols=30  Identities=30%  Similarity=0.276  Sum_probs=26.8

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ++++|+++.|.|++|+||||++..++....
T Consensus      1961 ~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ 1990 (2272)
T TIGR01257      1961 GVRPGECFGLLGVNGAGKTTTFKMLTGDTT 1990 (2272)
T ss_pred             EEcCCcEEEEECCCCCcHHHHHHHHhCCCC
Confidence            588999999999999999999988887653

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=98.05  E-value=3.7e-05  Score=64.99  Aligned_cols=29  Identities=28%  Similarity=0.161  Sum_probs=26.0

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.|++|+|||||+.-++...
T Consensus        47 ~i~~Ge~~~I~G~nGsGKSTLl~~laGl~   75 (272)
T PRK14236         47 RIPKNRVTAFIGPSGCGKSTLLRCFNRMN   75 (272)
T ss_pred             EEcCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            37899999999999999999999887654

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=98.04  E-value=3.3e-05  Score=64.35  Aligned_cols=27  Identities=26%  Similarity=0.233  Sum_probs=24.9

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      +.+|+++.|.|++|+|||||+..++..
T Consensus        28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14239         28 FYPNEITALIGPSGSGKSTLLRSINRM   54 (252)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            789999999999999999999888764

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.04  E-value=4.5e-05  Score=70.43  Aligned_cols=29  Identities=21%  Similarity=0.235  Sum_probs=25.8

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+.+|+++.|.|++|+|||||+.-++...
T Consensus        23 ~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~   51 (530)
T PRK15064         23 KFGGGNRYGLIGANGCGKSTFMKILGGDL   51 (530)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            38899999999999999999998888644

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=98.04  E-value=7.7e-05  Score=66.12  Aligned_cols=74  Identities=20%  Similarity=0.278  Sum_probs=48.5

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchH---------------------HHHHHHHHHHH
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE---------------------QSAVINYLDKF  134 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~---------------------~~~~l~~l~~~  134 (226)
                      .+.|+|+||+|||+++..++....-.    ..+..++|+++.......                     .-..+..+.+.
T Consensus        57 ~~lI~G~~GtGKT~l~~~v~~~l~~~----~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~  132 (394)
T PRK00411         57 NVLIYGPPGTGKTTTVKKVFEELEEI----AVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEY  132 (394)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHh----cCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Confidence            46899999999999999999876410    124678898854211100                     01223444455


Q ss_pred             HhhCCCceEEEEcCCchhh
Q 036464          135 VSEHKDVKVVIIDSIAFHF  153 (226)
Q Consensus       135 l~~~~~~~lvVIDsl~~l~  153 (226)
                      +....++-+||||++..+.
T Consensus       133 l~~~~~~~viviDE~d~l~  151 (394)
T PRK00411        133 LDERDRVLIVALDDINYLF  151 (394)
T ss_pred             HHhcCCEEEEEECCHhHhh
Confidence            5544467899999999765

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.04  E-value=9.4e-05  Score=62.72  Aligned_cols=28  Identities=32%  Similarity=0.293  Sum_probs=25.6

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+..++...
T Consensus        44 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~   71 (276)
T PRK14271         44 FPARAVTSLMGPTGSGKTTFLRTLNRMN   71 (276)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            7899999999999999999999887654

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.04  E-value=4.7e-05  Score=70.35  Aligned_cols=27  Identities=33%  Similarity=0.322  Sum_probs=24.7

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      +++|+++.|.||+|+|||||+..++..
T Consensus       342 i~~Ge~~~l~G~NGsGKSTLl~~i~G~  368 (530)
T PRK15064        342 LEAGERLAIIGENGVGKTTLLRTLVGE  368 (530)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999999888754

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.03  E-value=4.2e-05  Score=72.25  Aligned_cols=29  Identities=24%  Similarity=0.156  Sum_probs=25.9

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+.+|+++.|.||+|+|||||+..++...
T Consensus       334 ~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~  362 (638)
T PRK10636        334 NLVPGSRIGLLGRNGAGKSTLIKLLAGEL  362 (638)
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998888654

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=98.03  E-value=3.6e-05  Score=64.46  Aligned_cols=28  Identities=32%  Similarity=0.262  Sum_probs=25.7

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+.-++...
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~laGl~   54 (258)
T PRK14241         27 IEPRSVTAFIGPSGCGKSTVLRTLNRMH   54 (258)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            7899999999999999999998888754

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.03  E-value=2.5e-05  Score=71.59  Aligned_cols=29  Identities=24%  Similarity=0.314  Sum_probs=25.6

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.|++|+|||||+..++...
T Consensus       274 ~i~~Ge~~~liG~NGsGKSTLl~~l~G~~  302 (501)
T PRK10762        274 TLRKGEILGVSGLMGAGRTELMKVLYGAL  302 (501)
T ss_pred             EEcCCcEEEEecCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999998887543

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.03  E-value=3e-05  Score=65.64  Aligned_cols=28  Identities=21%  Similarity=0.215  Sum_probs=25.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+..++...
T Consensus        43 i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~   70 (274)
T PRK14265         43 IPAKKIIAFIGPSGCGKSTLLRCFNRMN   70 (274)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            7899999999999999999998887543

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.03  E-value=4e-05  Score=63.90  Aligned_cols=28  Identities=25%  Similarity=0.190  Sum_probs=25.7

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+.-++...
T Consensus        27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (252)
T PRK14256         27 FPENSVTAIIGPSGCGKSTVLRSINRMH   54 (252)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            7899999999999999999999888754

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=98.03  E-value=4.2e-05  Score=64.29  Aligned_cols=74  Identities=18%  Similarity=0.104  Sum_probs=45.2

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccC-CCCCeEEEEeccccCchHHH--HHHHHHHHHHhhCCCceEEEEcCCch
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG-GLGGKAIYIGKCLGFYTEQS--AVINYLDKFVSEHKDVKVVIIDSIAF  151 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~-~~~~~vlyi~~e~~~~~~~~--~~l~~l~~~l~~~~~~~lvVIDsl~~  151 (226)
                      .-+.|+||||+|||++|..++..+.-   .+ -..+.+++++...  .....  .....+.+.++.. ...+|+||++..
T Consensus        43 ~~vll~GppGtGKTtlA~~ia~~l~~---~~~~~~~~~v~~~~~~--l~~~~~g~~~~~~~~~~~~a-~~~VL~IDE~~~  116 (261)
T TIGR02881        43 LHMIFKGNPGTGKTTVARILGKLFKE---MNVLSKGHLIEVERAD--LVGEYIGHTAQKTREVIKKA-LGGVLFIDEAYS  116 (261)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHh---cCcccCCceEEecHHH--hhhhhccchHHHHHHHHHhc-cCCEEEEechhh
Confidence            45789999999999999999876531   00 1234566665431  11000  1123445556554 347999999998


Q ss_pred             hhh
Q 036464          152 HFR  154 (226)
Q Consensus       152 l~~  154 (226)
                      +.+
T Consensus       117 L~~  119 (261)
T TIGR02881       117 LAR  119 (261)
T ss_pred             hcc
Confidence            753

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=4.1e-05  Score=62.57  Aligned_cols=27  Identities=30%  Similarity=0.359  Sum_probs=24.9

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      +.+|++..|-||+|+|||||+..++-+
T Consensus        27 v~~GEvhaiMGPNGsGKSTLa~~i~G~   53 (251)
T COG0396          27 VKEGEVHAIMGPNGSGKSTLAYTIMGH   53 (251)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999999888754

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.03  E-value=4e-05  Score=68.97  Aligned_cols=44  Identities=23%  Similarity=0.283  Sum_probs=38.8

Q ss_pred             cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ...+.||+..+|.++.  +.+|+.+.|.|++|+|||+|+..++...
T Consensus       139 ~~~l~tg~~vid~l~~--i~~Gq~i~I~G~sG~GKStLl~~I~~~~  182 (438)
T PRK07721        139 REPMEVGVRAIDSLLT--VGKGQRVGIFAGSGVGKSTLMGMIARNT  182 (438)
T ss_pred             ccccccchhhhheeee--ecCCcEEEEECCCCCCHHHHHHHHhccc
Confidence            4578999999999976  9999999999999999999997776654

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=98.03  E-value=4.4e-05  Score=64.51  Aligned_cols=28  Identities=39%  Similarity=0.325  Sum_probs=25.9

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+..++...
T Consensus        47 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~   74 (271)
T PRK14238         47 IHENEVTAIIGPSGCGKSTYIKTLNRMV   74 (271)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            7899999999999999999999888764

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.03  E-value=4.2e-05  Score=70.14  Aligned_cols=28  Identities=21%  Similarity=0.299  Sum_probs=25.4

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.||+|+|||||+..++...
T Consensus       276 i~~Ge~~~iiG~NGsGKSTLlk~l~G~~  303 (501)
T PRK11288        276 VRAGEIVGLFGLVGAGRSELMKLLYGAT  303 (501)
T ss_pred             EeCCcEEEEEcCCCCCHHHHHHHHcCCC
Confidence            7899999999999999999998888554

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.03  E-value=1.1e-05  Score=60.58  Aligned_cols=28  Identities=36%  Similarity=0.304  Sum_probs=25.0

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|+|++|+|||+|+..++...
T Consensus         8 i~~g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen    8 IKPGEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEEccCCCccccceeeecccc
Confidence            6899999999999999999998776654

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=2.4e-05  Score=72.23  Aligned_cols=119  Identities=17%  Similarity=0.116  Sum_probs=79.2

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---cCchHHHHHHHHHHHHHhhCCCceEEEE
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---GFYTEQSAVINYLDKFVSEHKDVKVVII  146 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---~~~~~~~~~l~~l~~~l~~~~~~~lvVI  146 (226)
                      |+.+-.=++++||||+|||+++..+|.....         +-++|.+..   .-+.+.-..+..+-+..++. .+.+|++
T Consensus       464 Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~---------nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~-aP~IiFf  533 (693)
T KOG0730|consen  464 GISPPKGVLLYGPPGCGKTLLAKALANEAGM---------NFLSVKGPELFSKYVGESERAIREVFRKARQV-APCIIFF  533 (693)
T ss_pred             cCCCCceEEEECCCCcchHHHHHHHhhhhcC---------CeeeccCHHHHHHhcCchHHHHHHHHHHHhhc-CCeEEeh
Confidence            5666667999999999999999999988753         455554321   00112223344555555554 5799999


Q ss_pred             cCCchhhhcCcC-ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCC
Q 036464          147 DSIAFHFRHGFV-DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAE  198 (226)
Q Consensus       147 Dsl~~l~~~~~~-~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~  198 (226)
                      |++.++...... ......+.++++++.+.-+-.+.++.||...+--..++..
T Consensus       534 DEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~A  586 (693)
T KOG0730|consen  534 DEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPA  586 (693)
T ss_pred             hhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHH
Confidence            999987654322 1122445688888888888888888888766555555543

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.03  E-value=3.8e-05  Score=64.54  Aligned_cols=28  Identities=29%  Similarity=0.239  Sum_probs=25.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+.-++...
T Consensus        31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (261)
T PRK14263         31 IRKNEITGFIGPSGCGKSTVLRSLNRMN   58 (261)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHccc
Confidence            8899999999999999999998777554

>PTZ00243 ABC transporter; Provisional

Probab=98.02  E-value=1.7e-05  Score=81.52  Aligned_cols=29  Identities=34%  Similarity=0.384  Sum_probs=25.8

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +++|+.+.|+|++|+|||||+.-+..-+-
T Consensus      1333 I~~GekVaIVGrTGSGKSTLl~lLlrl~~ 1361 (1560)
T PTZ00243       1333 IAPREKVGIVGRTGSGKSTLLLTFMRMVE 1361 (1560)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            67999999999999999999988876653

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.02  E-value=3.8e-05  Score=75.58  Aligned_cols=40  Identities=23%  Similarity=0.163  Sum_probs=33.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      +|+|+.+.|+|++||||||+..-+.+-+       .+..+-++||++
T Consensus       376 i~~G~~valVG~SGsGKST~i~LL~Rfy-------dP~~G~V~idG~  415 (1228)
T KOG0055|consen  376 IPSGQTVALVGPSGSGKSTLIQLLARFY-------DPTSGEVLIDGE  415 (1228)
T ss_pred             eCCCCEEEEECCCCCCHHHHHHHHHHhc-------CCCCceEEEcCc
Confidence            8999999999999999999986655555       466677888854

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.02  E-value=4e-05  Score=63.87  Aligned_cols=27  Identities=26%  Similarity=0.267  Sum_probs=24.9

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      +.+|+++.|.|++|+|||||+.-++..
T Consensus        28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   54 (252)
T PRK14255         28 FNQNEITALIGPSGCGKSTYLRTLNRM   54 (252)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence            789999999999999999999988764

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=98.02  E-value=5.9e-05  Score=62.53  Aligned_cols=103  Identities=15%  Similarity=0.222  Sum_probs=61.9

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------CchH---------HHH-HH----HHHHHH
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-------FYTE---------QSA-VI----NYLDKF  134 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-------~~~~---------~~~-~l----~~l~~~  134 (226)
                      -+.|.|++|||||++++.+.....       ...+.+|+-++..       -.++         .++ .+    ..+.+.
T Consensus        15 r~viIG~sGSGKT~li~~lL~~~~-------~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~   87 (241)
T PF04665_consen   15 RMVIIGKSGSGKTTLIKSLLYYLR-------HKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKY   87 (241)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhhc-------ccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999987764       2334455443320       0011         111 11    223333


Q ss_pred             Hhh-----CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464          135 VSE-----HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA  197 (226)
Q Consensus       135 l~~-----~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~  197 (226)
                      ...     .+...+||+|.++.-      .  .+.    +.+..+-.-.+.+++.++++.|.......
T Consensus        88 ~~k~~~~k~~~~~LiIlDD~~~~------~--~k~----~~l~~~~~~gRH~~is~i~l~Q~~~~lp~  143 (241)
T PF04665_consen   88 IKKSPQKKNNPRFLIILDDLGDK------K--LKS----KILRQFFNNGRHYNISIIFLSQSYFHLPP  143 (241)
T ss_pred             hhhhcccCCCCCeEEEEeCCCCc------h--hhh----HHHHHHHhcccccceEEEEEeeecccCCH
Confidence            331     123569999998631      0  122    33445555678899999999999876654

This is thought to be an ATPase involved in viral DNA packaging [].

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.02  E-value=3.9e-05  Score=64.79  Aligned_cols=28  Identities=29%  Similarity=0.229  Sum_probs=25.5

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+.-++...
T Consensus        36 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   63 (269)
T PRK14259         36 IPRGKVTALIGPSGCGKSTVLRSLNRMN   63 (269)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            7899999999999999999998887653

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.02  E-value=4.7e-05  Score=71.88  Aligned_cols=28  Identities=21%  Similarity=0.192  Sum_probs=25.3

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+|+++.|.|++|+|||||+..++...
T Consensus       342 i~~Ge~~~l~G~NGsGKSTLlk~l~G~~  369 (635)
T PRK11147        342 VQRGDKIALIGPNGCGKTTLLKLMLGQL  369 (635)
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            7899999999999999999998887643

>PRK14974 cell division protein FtsY; Provisional

Probab=98.01  E-value=6.9e-05  Score=65.26  Aligned_cols=39  Identities=26%  Similarity=0.167  Sum_probs=32.9

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL  118 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~  118 (226)
                      ..++.++|+||+||||.+..++..+.      ..+.+|+++++..
T Consensus       140 ~~vi~~~G~~GvGKTTtiakLA~~l~------~~g~~V~li~~Dt  178 (336)
T PRK14974        140 PVVIVFVGVNGTGKTTTIAKLAYYLK------KNGFSVVIAAGDT  178 (336)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHH------HcCCeEEEecCCc
Confidence            57999999999999999999998765      4567899988653

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=98.01  E-value=9e-05  Score=70.24  Aligned_cols=27  Identities=26%  Similarity=0.341  Sum_probs=23.4

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ....++|+|++|+|||+++..++..+.
T Consensus        37 L~HAyLFtGPpGvGKTTlAriLAKaLn   63 (830)
T PRK07003         37 LHHAYLFTGTRGVGKTTLSRIFAKALN   63 (830)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            355688999999999999999998774

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.01  E-value=0.00011  Score=65.22  Aligned_cols=78  Identities=22%  Similarity=0.150  Sum_probs=53.3

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc--hHHHH--------------HHHHHHHHHh
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY--TEQSA--------------VINYLDKFVS  136 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~--~~~~~--------------~l~~l~~~l~  136 (226)
                      .+.++.++||+|+||||.+..+|..+.+-  ....+.+|.+++...+..  .+|+.              ....+...+.
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~--~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~  250 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGIN--SDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEIT  250 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhh--hccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHH
Confidence            35799999999999999999999887531  012467888888664221  22221              1234555555


Q ss_pred             hCCCceEEEEcCCchh
Q 036464          137 EHKDVKVVIIDSIAFH  152 (226)
Q Consensus       137 ~~~~~~lvVIDsl~~l  152 (226)
                      ...+.++|+||.....
T Consensus       251 ~~~~~DlVLIDTaGr~  266 (388)
T PRK12723        251 QSKDFDLVLVDTIGKS  266 (388)
T ss_pred             HhCCCCEEEEcCCCCC
Confidence            5567899999999854

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.01  E-value=4.4e-05  Score=61.95  Aligned_cols=41  Identities=22%  Similarity=0.255  Sum_probs=32.6

Q ss_pred             CchhHHHhhCC---CCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           59 SCADLDNILGG---GIGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        59 g~~~LD~~l~G---Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      |.+.=+.+|.|   -++.|+++.+.|.+|+|||||+..++....
T Consensus        14 g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~   57 (263)
T COG1101          14 GTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK   57 (263)
T ss_pred             CChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc
Confidence            44444445544   489999999999999999999998888775

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.00  E-value=4.3e-05  Score=63.77  Aligned_cols=27  Identities=30%  Similarity=0.234  Sum_probs=24.9

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      +++|+++.|.|++|+|||||+.-++..
T Consensus        29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   55 (253)
T PRK14261         29 IPKNRVTALIGPSGCGKSTLLRCFNRM   55 (253)
T ss_pred             ECCCcEEEEECCCCCCHHHHHHHHhcc
Confidence            789999999999999999999888754

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=98.00  E-value=2.4e-05  Score=80.17  Aligned_cols=28  Identities=21%  Similarity=0.176  Sum_probs=26.0

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+.+.|+|++|+|||||+..++.-+
T Consensus      1242 I~~GekvaIvGrSGsGKSTLl~lL~rl~ 1269 (1490)
T TIGR01271      1242 VEGGQRVGLLGRTGSGKSTLLSALLRLL 1269 (1490)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhhhc
Confidence            7899999999999999999999888765

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.00  E-value=8.3e-05  Score=57.60  Aligned_cols=24  Identities=38%  Similarity=0.602  Sum_probs=21.2

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhc
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      -+.|+|+||+||||+++.++-...
T Consensus         7 ki~ITG~PGvGKtTl~~ki~e~L~   30 (179)
T COG1618           7 KIFITGRPGVGKTTLVLKIAEKLR   30 (179)
T ss_pred             EEEEeCCCCccHHHHHHHHHHHHH
Confidence            478999999999999999997664

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=98.00  E-value=3.7e-05  Score=67.84  Aligned_cols=112  Identities=21%  Similarity=0.158  Sum_probs=70.7

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhc-cccccCCCCCeEEEEe---------ccc---c---CchHHH---------
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ-IPVEFGGLGGKAIYIG---------KCL---G---FYTEQS---------  125 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~-lp~~~~~~~~~vlyi~---------~e~---~---~~~~~~---------  125 (226)
                      +.+|+++.|.|++|+|||++...++.... .+.+.-.+..+.+-+.         +|.   +   ...+++         
T Consensus       406 ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tilehl~s~tGD~~~  485 (593)
T COG2401         406 IKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRSKTGDLNA  485 (593)
T ss_pred             ecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHHHHhhccCchhH
Confidence            78999999999999999999988877654 1111111111222111         111   0   111111         


Q ss_pred             --HH-------------------------HHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHH
Q 036464          126 --AV-------------------------INYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLA  178 (226)
Q Consensus       126 --~~-------------------------l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la  178 (226)
                        +.                         -..|.+++.+  ++.++++|++.++++..         -...+++.+.++|
T Consensus       486 AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllae--rpn~~~iDEF~AhLD~~---------TA~rVArkisela  554 (593)
T COG2401         486 AVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAE--RPNVLLIDEFAAHLDEL---------TAVRVARKISELA  554 (593)
T ss_pred             HHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhc--CCCcEEhhhhhhhcCHH---------HHHHHHHHHHHHH
Confidence              00                         1134445543  68999999999987431         1236889999999


Q ss_pred             HHcCCEEEEeccccc
Q 036464          179 KKFSLALLEPNLATT  193 (226)
Q Consensus       179 ~~~~~~vi~~nq~~~  193 (226)
                      ++.++|++++.|--.
T Consensus       555 Re~giTlivvThrpE  569 (593)
T COG2401         555 REAGITLIVVTHRPE  569 (593)
T ss_pred             HHhCCeEEEEecCHH
Confidence            999999998877654

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=7.5e-05  Score=65.82  Aligned_cols=87  Identities=20%  Similarity=0.145  Sum_probs=61.0

Q ss_pred             HHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHH------------------
Q 036464           63 LDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ------------------  124 (226)
Q Consensus        63 LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~------------------  124 (226)
                      |...+.|+.|..  +.|+|+||+|||..+..++..+.-+    .....++||++.......+                  
T Consensus        33 l~~~~~~~~p~n--~~iyG~~GTGKT~~~~~v~~~l~~~----~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~  106 (366)
T COG1474          33 LAPALRGERPSN--IIIYGPTGTGKTATVKFVMEELEES----SANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDS  106 (366)
T ss_pred             HHHHhcCCCCcc--EEEECCCCCCHhHHHHHHHHHHHhh----hccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCc
Confidence            566677887776  8888999999999999999888521    1122389999764222221                  


Q ss_pred             -HHHHHHHHHHHhhCCCceEEEEcCCchhhhc
Q 036464          125 -SAVINYLDKFVSEHKDVKVVIIDSIAFHFRH  155 (226)
Q Consensus       125 -~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~  155 (226)
                       ...++.+.+.+....+.-+||+|++..+...
T Consensus       107 ~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~  138 (366)
T COG1474         107 SLEILKRLYDNLSKKGKTVIVILDEVDALVDK  138 (366)
T ss_pred             hHHHHHHHHHHHHhcCCeEEEEEcchhhhccc
Confidence             1234556666666557889999999988754

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=97.99  E-value=5.9e-05  Score=63.49  Aligned_cols=27  Identities=22%  Similarity=0.199  Sum_probs=25.0

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      +++|+++.|.|++|+|||||+.-++..
T Consensus        33 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   59 (264)
T PRK14243         33 IPKNQITAFIGPSGCGKSTILRCFNRL   59 (264)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            789999999999999999999988854

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.99  E-value=4.2e-05  Score=65.16  Aligned_cols=28  Identities=25%  Similarity=0.195  Sum_probs=25.4

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+|+++.|.|++|+|||||+.-++...
T Consensus        62 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~   89 (285)
T PRK14254         62 IPENQVTAMIGPSGCGKSTFLRCINRMN   89 (285)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            7899999999999999999998887654

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.98  E-value=0.00014  Score=60.59  Aligned_cols=28  Identities=32%  Similarity=0.216  Sum_probs=25.7

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+|+++.|.|++|+|||||+.-++...
T Consensus        28 i~~Ge~~~I~G~nGsGKSTLl~~i~G~~   55 (251)
T PRK14244         28 IYKREVTAFIGPSGCGKSTFLRCFNRMN   55 (251)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            7899999999999999999999888664

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=97.98  E-value=3.3e-05  Score=70.97  Aligned_cols=28  Identities=25%  Similarity=0.210  Sum_probs=25.4

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.||+|+|||||+..++...
T Consensus       286 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~  313 (510)
T PRK09700        286 VCRGEILGFAGLVGSGRTELMNCLFGVD  313 (510)
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999998888643

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=97.98  E-value=7.7e-05  Score=68.36  Aligned_cols=29  Identities=24%  Similarity=0.194  Sum_probs=25.7

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.|++|+|||||+..++...
T Consensus        23 ~i~~Ge~~~liG~nGsGKSTLl~~i~G~~   51 (500)
T TIGR02633        23 EVRPGECVGLCGENGAGKSTLMKILSGVY   51 (500)
T ss_pred             EEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            48899999999999999999998887643

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK04195 replication factor C large subunit; Provisional

Probab=97.98  E-value=7.3e-05  Score=68.32  Aligned_cols=69  Identities=17%  Similarity=0.200  Sum_probs=43.7

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhh---C-CCceEEEEcCC
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSE---H-KDVKVVIIDSI  149 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~---~-~~~~lvVIDsl  149 (226)
                      ...++|+||||+|||+++..+|..+-         ..++.++.......+.+.  ..+......   . .+.++||||++
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el~---------~~~ielnasd~r~~~~i~--~~i~~~~~~~sl~~~~~kvIiIDEa  107 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDYG---------WEVIELNASDQRTADVIE--RVAGEAATSGSLFGARRKLILLDEV  107 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcC---------CCEEEEcccccccHHHHH--HHHHHhhccCcccCCCCeEEEEecC
Confidence            56799999999999999999988762         457777654222222211  111111111   1 25789999999


Q ss_pred             chhh
Q 036464          150 AFHF  153 (226)
Q Consensus       150 ~~l~  153 (226)
                      ..+.
T Consensus       108 D~L~  111 (482)
T PRK04195        108 DGIH  111 (482)
T ss_pred             cccc
Confidence            8764

>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=5.1e-05  Score=64.16  Aligned_cols=132  Identities=16%  Similarity=0.176  Sum_probs=80.6

Q ss_pred             cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe---ccc--cCchHHH
Q 036464           51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG---KCL--GFYTEQS  125 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~---~e~--~~~~~~~  125 (226)
                      ++.--+|---+++-+-+  |+.+-.=+.++|+||+|||.||..+|..-.           +-|+-   +|.  .-..+-.
T Consensus       198 KEsvELPLthPE~Yeem--GikpPKGVIlyG~PGTGKTLLAKAVANqTS-----------ATFlRvvGseLiQkylGdGp  264 (440)
T KOG0726|consen  198 KESVELPLTHPEYYEEM--GIKPPKGVILYGEPGTGKTLLAKAVANQTS-----------ATFLRVVGSELIQKYLGDGP  264 (440)
T ss_pred             HHhhcCCCCCHHHHHHc--CCCCCCeeEEeCCCCCchhHHHHHHhcccc-----------hhhhhhhhHHHHHHHhccch
Confidence            34455666677777776  466666689999999999999988876543           12211   110  0011112


Q ss_pred             HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChH----HHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464          126 AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA----LRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL  196 (226)
Q Consensus       126 ~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~----~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~  196 (226)
                      .++..+-+...++ .+.+++||+|.++=...++..+    +-++-+-++++.|..+-.+-.+-||+...-....+
T Consensus       265 klvRqlF~vA~e~-apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie~LD  338 (440)
T KOG0726|consen  265 KLVRELFRVAEEH-APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLD  338 (440)
T ss_pred             HHHHHHHHHHHhc-CCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEecccccccC
Confidence            4566777777765 8999999999987655554222    22333445566666565666677775443333333

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=97.96  E-value=4.1e-05  Score=70.44  Aligned_cols=28  Identities=29%  Similarity=0.400  Sum_probs=25.1

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      -+++|+++.|.|++|+|||||+..++..
T Consensus       285 ~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl  312 (510)
T PRK15439        285 EVRAGEILGLAGVVGAGRTELAETLYGL  312 (510)
T ss_pred             EEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence            3789999999999999999999887754

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=97.96  E-value=0.00014  Score=61.33  Aligned_cols=28  Identities=21%  Similarity=0.178  Sum_probs=25.6

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+|+++.|.|++|+|||||+..++...
T Consensus        43 i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~   70 (267)
T PRK14237         43 FEKNKITALIGPSGSGKSTYLRSLNRMN   70 (267)
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            7899999999999999999999887754

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=97.96  E-value=4e-05  Score=70.13  Aligned_cols=28  Identities=21%  Similarity=0.175  Sum_probs=25.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.|++|+|||||+..++...
T Consensus       271 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~  298 (491)
T PRK10982        271 LHKGEILGIAGLVGAKRTDIVETLFGIR  298 (491)
T ss_pred             EeCCcEEEEecCCCCCHHHHHHHHcCCC
Confidence            8899999999999999999998887543

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=0.00013  Score=62.01  Aligned_cols=97  Identities=18%  Similarity=0.217  Sum_probs=64.1

Q ss_pred             hHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC
Q 036464           41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF  120 (226)
Q Consensus        41 ~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~  120 (226)
                      .|-+.|++.    ..+|--++.   ++.|+-.|=+=++++||||+|||-|+..+|...-           .-|++-...+
T Consensus       140 ~AKeALKEA----VILPIKFPq---lFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-----------STFFSvSSSD  201 (439)
T KOG0739|consen  140 GAKEALKEA----VILPIKFPQ---LFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-----------STFFSVSSSD  201 (439)
T ss_pred             hHHHHHHhh----eeecccchh---hhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-----------CceEEeehHH
Confidence            344444443    344444443   5667777777899999999999999998887752           4555532101


Q ss_pred             -----chHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcC
Q 036464          121 -----YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHG  156 (226)
Q Consensus       121 -----~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~  156 (226)
                           ..|.-.++.++-++.+++ +|.+|+||++.++-...
T Consensus       202 LvSKWmGESEkLVknLFemARe~-kPSIIFiDEiDslcg~r  241 (439)
T KOG0739|consen  202 LVSKWMGESEKLVKNLFEMAREN-KPSIIFIDEIDSLCGSR  241 (439)
T ss_pred             HHHHHhccHHHHHHHHHHHHHhc-CCcEEEeehhhhhccCC
Confidence                 112224567777777775 89999999999776543

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.96  E-value=7.4e-05  Score=62.25  Aligned_cols=27  Identities=22%  Similarity=0.201  Sum_probs=24.9

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      +.+|+++.|.|++|+|||||+..++..
T Consensus        26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl   52 (250)
T PRK14245         26 IEEKSVVAFIGPSGCGKSTFLRLFNRM   52 (250)
T ss_pred             EeCCCEEEEECCCCCCHHHHHHHHhhh
Confidence            789999999999999999999988753

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.96  E-value=0.0001  Score=59.38  Aligned_cols=96  Identities=13%  Similarity=0.077  Sum_probs=55.4

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-c------CchHH-------HHHHHHHHHHHhhCCC
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-G------FYTEQ-------SAVINYLDKFVSEHKD  140 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-~------~~~~~-------~~~l~~l~~~l~~~~~  140 (226)
                      .++.|+||+|+||||++..++....-     ..++.++.+.... +      ....|       ....+.+...+..  +
T Consensus         2 GlilI~GptGSGKTTll~~ll~~~~~-----~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~--~   74 (198)
T cd01131           2 GLVLVTGPTGSGKSTTLAAMIDYINK-----NKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQ--D   74 (198)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhhh-----cCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcC--C
Confidence            37899999999999999888777641     1233444443211 0      00000       1122334444443  6


Q ss_pred             ceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          141 VKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       141 ~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      ++++++|++...                +.+..+.+.+ ..|..|+.|.|....
T Consensus        75 pd~ii~gEird~----------------e~~~~~l~~a-~~G~~v~~t~Ha~~~  111 (198)
T cd01131          75 PDVILVGEMRDL----------------ETIRLALTAA-ETGHLVMSTLHTNSA  111 (198)
T ss_pred             cCEEEEcCCCCH----------------HHHHHHHHHH-HcCCEEEEEecCCcH
Confidence            899999998521                1122323334 467888888887653

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=97.96  E-value=7.1e-05  Score=63.28  Aligned_cols=36  Identities=28%  Similarity=0.097  Sum_probs=26.6

Q ss_pred             hHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           62 DLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        62 ~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      .|+.+...|-  ...+.|.|+||+|||||+..++....
T Consensus       101 ~l~~l~~~~~--~~~~~i~g~~g~GKttl~~~l~~~~~  136 (270)
T TIGR02858       101 LLPYLVRNNR--VLNTLIISPPQCGKTTLLRDLARILS  136 (270)
T ss_pred             HHHHHHhCCC--eeEEEEEcCCCCCHHHHHHHHhCccC
Confidence            4555553221  15789999999999999999887764

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=97.95  E-value=4.3e-05  Score=67.77  Aligned_cols=103  Identities=18%  Similarity=0.212  Sum_probs=65.9

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH--HHH-HHHHHHHhhCCCceEEEEcCC
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS--AVI-NYLDKFVSEHKDVKVVIIDSI  149 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~--~~l-~~l~~~l~~~~~~~lvVIDsl  149 (226)
                      ...-+.|+|+.|+|||+|++.++..+..    .+...+++|++.|  .+...+  +.. +.++++=+.. ..++++||.+
T Consensus       112 ~~nplfi~G~~GlGKTHLl~Aign~~~~----~~~~a~v~y~~se--~f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDDi  184 (408)
T COG0593         112 AYNPLFIYGGVGLGKTHLLQAIGNEALA----NGPNARVVYLTSE--DFTNDFVKALRDNEMEKFKEKY-SLDLLLIDDI  184 (408)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHHHHHHh----hCCCceEEeccHH--HHHHHHHHHHHhhhHHHHHHhh-ccCeeeechH
Confidence            4667899999999999999998887752    2345689999877  332221  111 3444454555 7899999999


Q ss_pred             chhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464          150 AFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA  191 (226)
Q Consensus       150 ~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~  191 (226)
                      +.+-..+     ..+.   +++..+..+- +.|-.+|+|..-
T Consensus       185 q~l~gk~-----~~qe---efFh~FN~l~-~~~kqIvltsdr  217 (408)
T COG0593         185 QFLAGKE-----RTQE---EFFHTFNALL-ENGKQIVLTSDR  217 (408)
T ss_pred             hHhcCCh-----hHHH---HHHHHHHHHH-hcCCEEEEEcCC
Confidence            9654321     1233   4444444443 345477777643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	226
2dfl_A	324	Crystal Structure Of Left-Handed Rada Filament Leng		3e-18
2bke_A	324	Conformational Flexibility Revealed By The Crystal		4e-18
1pzn_A	349	Rad51 (Rada) Length = 349		4e-13
4b2i_A	231	Humanised Monomeric Rada In Complex With Indazole L		8e-13
4a6p_A	231	Rada C-Terminal Atpase Domain From Pyrococcus Furio		1e-12
1v5w_A	343	Crystal Structure Of The Human Dmc1 Protein Length		5e-09
2zjb_A	343	Crystal Structure Of The Human Dmc1-M200v Polymorph		6e-09
2f1h_A	322	Recombinase In Complex With Amp-pnp And Potassium L		3e-08
1t4g_A	322	Atpase In Complex With Amp-pnp Length = 322		3e-08
4dc9_A	266	Hexameric Ring Of Methanococcus Voltae Rada Length		3e-08
2gdj_A	264	Delta-62 Rada Recombinase In Complex With Amp-Pnp A		3e-08
3ntu_A	319	Rada Recombinase D302k Mutant In Complex With Amp-P		3e-08
1szp_A	321	A Crystal Structure Of The Rad51 Filament Length =		4e-07
3lda_A	400	Yeast Rad51 H352y Filament Interface Mutant Length		9e-07
1n0w_A	243	Crystal Structure Of A Rad51-Brca2 Brc Repeat Compl		4e-06
3etl_A	322	Rada Recombinase From Methanococcus Maripaludis In		6e-06

>pdb|2DFL|A Chain A, Crystal Structure Of Left-Handed Rada Filament Length = 324

Iteration: 1
 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/177 (33%), Positives = 95/177 (53%), Gaps = 33/177 (18%)
Query: 46  LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
           +++E+ ++ +I+T    LD +L GGI  R +TE  G  G GKTQL  QL+VNVQ+P E G
Sbjct: 79  VKKERMNVKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG 138
Query: 106 GLGGKAIYI--------------GKCLG----------FY------TEQSAVINYLDKFV 135
           GL GKA+YI               K LG          +Y        Q A+++ L + V
Sbjct: 139 GLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAIVDDLQELV 198
Query: 136 SEHKDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
           S+   +K++++DS+  HFR    G  +LA+R + L+    +L  LA+ + +A++  N
Sbjct: 199 SKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITN 255

>pdb|2BKE|A Chain A, Conformational Flexibility Revealed By The Crystal Structure Of A Crenarchaeal Rada Length = 324

Iteration: 1
 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/174 (33%), Positives = 93/174 (53%), Gaps = 33/174 (18%)
Query: 46  LQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
           +++E+ ++ +I+T    LD +L GGI  R  TE  G  G GKTQL  QL+VNVQ+P E G
Sbjct: 79  VKKERXNVKKISTGSQALDGLLAGGIETRTXTEFFGEFGSGKTQLCHQLSVNVQLPPEKG 138
Query: 106 GLGGKAIYI--------------GKCLG----------FY------TEQSAVINYLDKFV 135
           GL GKA+YI               K LG          +Y        Q A+++ L + V
Sbjct: 139 GLSGKAVYIDTEGTFRWERIENXAKALGLDIDNVXNNIYYIRAINTDHQIAIVDDLQELV 198
Query: 136 SEHKDVKVVIIDSIAFHFR---HGFVDLALRTRVLSGIALKLMNLAKKFSLALL 186
           S+   +K++++DS+  HFR    G  +LA+R + L+    +L  LA+ + +A++
Sbjct: 199 SKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVI 252

>pdb|1PZN|A Chain A, Rad51 (Rada) Length = 349

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 86/189 (45%), Gaps = 37/189 (19%)
Query: 38  GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
           GT    D   +++ ++ RI+T    LD +LGGGI  + +TE+ G  G GKTQL   LAV 
Sbjct: 95  GTFXRADEYLKKRATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVX 154
Query: 98  VQIPVEFGGLGGKAIYIGKCLGFYTEQ------------SAVINYL---DKFVSEH---- 138
           VQ+P E GGL G  I+I     F  E+              V+ ++     F S H    
Sbjct: 155 VQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQXLL 214
Query: 139 ---------------KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKK 180
                          + VK++I+DS+  HFR  ++    LA R + L+     L  LA  
Sbjct: 215 VQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANL 274
Query: 181 FSLALLEPN 189
           + +A+   N
Sbjct: 275 YDIAVFVTN 283

>pdb|4B2I|A Chain A, Humanised Monomeric Rada In Complex With Indazole Length = 231

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 78/175 (44%), Gaps = 37/175 (21%)
Query: 52  SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
           ++ RI+T    LD +LGGGI  + +TE+ G  G GKTQL   LAV VQ+P E GGL G  
Sbjct: 3   TIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSV 62
Query: 112 IYIGKCLGFYTEQS---------------AVINYLDKFVSEH------------------ 138
           ++I     F  E+                  I Y   F S H                  
Sbjct: 63  MWIDTENTFRPERIREIAQNRGLDPDEVLKHIAYARAFNSNHQMLLVQQAEDMIKELLNT 122
Query: 139 -KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
            + VK++I+DS+  HFR  ++    LA R + L+     L  LA  + +A+   N
Sbjct: 123 DRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTN 177

>pdb|4A6P|A Chain A, Rada C-Terminal Atpase Domain From Pyrococcus Furiosus Length = 231

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/175 (31%), Positives = 80/175 (45%), Gaps = 37/175 (21%)
Query: 52  SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKA 111
           ++ RI+T    LD +LGGGI  + +TE+ G  G GKTQL   LAV VQ+P E GGL G  
Sbjct: 3   TIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSV 62
Query: 112 IYIGKCLGFYTEQ------------SAVINYL---DKFVSEH------------------ 138
           I+I     F  E+              V+ ++     F S H                  
Sbjct: 63  IWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNT 122
Query: 139 -KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALLEPN 189
            + VK++I+DS+  HFR  ++    LA R + L+     L  LA  + +A+   N
Sbjct: 123 DRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTN 177

>pdb|1V5W|A Chain A, Crystal Structure Of The Human Dmc1 Protein Length = 343

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 35/186 (18%)
Query: 41  TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
           TA++   E+++ +  ITT   + D +LGGGI    +TE  G    GKTQL   L V  Q+
Sbjct: 90  TAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQL 148
Query: 101 PVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN---YLDKFVSEHKD----- 140
           P   G  GGK I+I                 F  +  AV++   Y   + SEH+      
Sbjct: 149 PGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDY 208
Query: 141 -----------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALL 186
                       K++IIDSI   FR  F    +LA R + L+ +  +L  +++++++A+ 
Sbjct: 209 VAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVF 268
Query: 187 EPNLAT 192
             N  T
Sbjct: 269 VTNQMT 274

>pdb|2ZJB|A Chain A, Crystal Structure Of The Human Dmc1-M200v Polymorphic Variant Length = 343

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 35/186 (18%)
Query: 41  TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
           TA++   E+++ +  ITT   + D +LGGGI    +TE  G    GKTQL   L V  Q+
Sbjct: 90  TAFE-YSEKRKMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQL 148
Query: 101 PVEFGGLGGKAIYIGK------------CLGFYTEQSAVIN---YLDKFVSEHKD----- 140
           P   G  GGK I+I                 F  +  AV++   Y   + SEH+      
Sbjct: 149 PGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQVELLDY 208
Query: 141 -----------VKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLALL 186
                       K++IIDSI   FR  F    +LA R + L+ +  +L  +++++++A+ 
Sbjct: 209 VAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVF 268
Query: 187 EPNLAT 192
             N  T
Sbjct: 269 VTNQMT 274

>pdb|2F1H|A Chain A, Recombinase In Complex With Amp-pnp And Potassium Length = 322

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 90/195 (46%), Gaps = 44/195 (22%)
Query: 38  GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
           G ++  D+L++ + ++ +++TS ++LD++LGGG+  + VTE  GV G GKTQ+  Q  VN
Sbjct: 63  GFKSGIDLLKQ-RSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121
Query: 98  VQIP---------VEFGGLG-GKAIYIGKCLGFYTE-------------QSAVIN----- 129
           +Q P         V  G +   KA+YI     F  E             Q+ + N     
Sbjct: 122 LQNPEFLFYDEEAVSKGEVAQPKAVYIDTDGTFRPERIMQMAEHAGIDGQTVLDNTFVAR 181
Query: 130 ------------YLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
                        ++  + E  ++K+V+IDS+   FR+ +     LA R + L      L
Sbjct: 182 AYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATL 241
Query: 175 MNLAKKFSLALLEPN 189
             LA  F+  +L  N
Sbjct: 242 NKLADLFNCVVLVTN 256

>pdb|1T4G|A Chain A, Atpase In Complex With Amp-pnp Length = 322

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 90/195 (46%), Gaps = 44/195 (22%)
Query: 38  GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
           G ++  D+L++ + ++ +++TS ++LD++LGGG+  + VTE  GV G GKTQ+  Q  VN
Sbjct: 63  GFKSGIDLLKQ-RSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121
Query: 98  VQIP---------VEFGGLG-GKAIYIGKCLGFYTE-------------QSAVIN----- 129
           +Q P         V  G +   KA+YI     F  E             Q+ + N     
Sbjct: 122 LQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVAR 181
Query: 130 ------------YLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
                        ++  + E  ++K+V+IDS+   FR+ +     LA R + L      L
Sbjct: 182 AYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATL 241
Query: 175 MNLAKKFSLALLEPN 189
             LA  F+  +L  N
Sbjct: 242 NKLADLFNCVVLVTN 256

>pdb|4DC9|A Chain A, Hexameric Ring Of Methanococcus Voltae Rada Length = 266

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 90/195 (46%), Gaps = 44/195 (22%)
Query: 38  GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
           G ++  D+L++ + ++ +++TS ++LD++LGGG+  + VTE  GV G GKTQ+  Q  VN
Sbjct: 7   GFKSGIDLLKQ-RSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 65
Query: 98  VQIP---------VEFGGLG-GKAIYIGKCLGFYTE-------------QSAVIN----- 129
           +Q P         V  G +   KA+YI     F  E             Q+ + N     
Sbjct: 66  LQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVAR 125
Query: 130 ------------YLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
                        ++  + E  ++K+V+IDS+   FR+ +     LA R + L      L
Sbjct: 126 AYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATL 185
Query: 175 MNLAKKFSLALLEPN 189
             LA  F+  +L  N
Sbjct: 186 NKLADLFNCVVLVTN 200

>pdb|2GDJ|A Chain A, Delta-62 Rada Recombinase In Complex With Amp-Pnp And Magnesium Length = 264

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 90/195 (46%), Gaps = 44/195 (22%)
Query: 38  GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
           G ++  D+L++ + ++ +++TS ++LD++LGGG+  + VTE  GV G GKTQ+  Q  VN
Sbjct: 5   GFKSGIDLLKQ-RSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 63
Query: 98  VQIP---------VEFGGLG-GKAIYIGKCLGFYTE-------------QSAVIN----- 129
           +Q P         V  G +   KA+YI     F  E             Q+ + N     
Sbjct: 64  LQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVAR 123
Query: 130 ------------YLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
                        ++  + E  ++K+V+IDS+   FR+ +     LA R + L      L
Sbjct: 124 AYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATL 183
Query: 175 MNLAKKFSLALLEPN 189
             LA  F+  +L  N
Sbjct: 184 NKLADLFNCVVLVTN 198

>pdb|3NTU|A Chain A, Rada Recombinase D302k Mutant In Complex With Amp-Pnp Length = 319

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 54/195 (27%), Positives = 90/195 (46%), Gaps = 44/195 (22%)
Query: 38  GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
           G ++  D+L++ + ++ +++TS ++LD++LGGG+  + VTE  GV G GKTQ+  Q  VN
Sbjct: 60  GFKSGIDLLKQ-RSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 118
Query: 98  VQIP---------VEFGGLG-GKAIYIGKCLGFYTE-------------QSAVIN----- 129
           +Q P         V  G +   KA+YI     F  E             Q+ + N     
Sbjct: 119 LQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVAR 178
Query: 130 ------------YLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
                        ++  + E  ++K+V+IDS+   FR+ +     LA R + L      L
Sbjct: 179 AYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATL 238
Query: 175 MNLAKKFSLALLEPN 189
             LA  F+  +L  N
Sbjct: 239 NKLADLFNCVVLVTN 253

>pdb|1SZP|A Chain A, A Crystal Structure Of The Rad51 Filament Length = 321

Iteration: 1
 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/77 (42%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 38  GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
           G  TA D      E L  +TT   +LD +LGGG+    +TE+ G    GK+QL   LAV 
Sbjct: 64  GFVTAADFHMRRSE-LICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVT 122
Query: 98  VQIPVEFGGLGGKAIYI 114
            QIP++ GG  GK +YI
Sbjct: 123 CQIPLDIGGGEGKCLYI 139

>pdb|3LDA|A Chain A, Yeast Rad51 H352y Filament Interface Mutant Length = 400

Iteration: 1
 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/74 (43%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 41  TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
           TA D      E L  +TT   +LD +LGGG+    +TE+ G    GK+QL   LAV  QI
Sbjct: 146 TAADFHMRRSE-LICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQI 204
Query: 101 PVEFGGLGGKAIYI 114
           P++ GG  GK +YI
Sbjct: 205 PLDIGGGEGKCLYI 218

>pdb|1N0W|A Chain A, Crystal Structure Of A Rad51-Brca2 Brc Repeat Complex Length = 243

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 36/60 (60%)
Query: 55  RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
           +ITT   +LD +L GGI    +TE  G    GKTQ+   LAV  Q+P++ GG  GKA YI
Sbjct: 5   QITTGSKELDKLLQGGIETGSITEXFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAXYI 64

>pdb|3ETL|A Chain A, Rada Recombinase From Methanococcus Maripaludis In Complex With Amppnp Length = 322

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 51/195 (26%), Positives = 83/195 (42%), Gaps = 44/195 (22%)
Query: 38  GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
           G ++  ++L++ Q S+ R++T   +LD +L GGI  + VTE  G+ G GKTQ+  Q  VN
Sbjct: 63  GFKSGVELLKQRQ-SVWRLSTGSTELDTVLAGGIESQSVTEFAGMFGSGKTQIMHQTCVN 121
Query: 98  VQIPVEF----------GGLGGKAIYIGKCLGFYTE-------------QSAVIN----- 129
           +Q+  +                KA+YI     F  E             Q+ + N     
Sbjct: 122 LQMREKIFADLEGVVEEELEAPKAVYIDTEGTFRPERVVQMAEGAGIDGQTVLDNTFVAR 181
Query: 130 ------------YLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKL 174
                        ++  +    ++K+VIIDS+   FR+ F     LA R + L      L
Sbjct: 182 AYNSDMQMLFAEKIEDLIKGGNNIKLVIIDSLTSTFRNEFTGRGKLAERQQKLGRHMATL 241
Query: 175 MNLAKKFSLALLEPN 189
             LA  ++  +L  N
Sbjct: 242 NKLADLYNCIVLVTN 256

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	226
2z43_A	324	DNA repair and recombination protein RADA; archaea	4e-48
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	3e-40
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	6e-37
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	3e-36
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	1e-33
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	4e-32
2cvh_A	220	DNA repair and recombination protein RADB; filamen	1e-18
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	5e-08
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	1e-07
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	2e-06
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	7e-07
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	7e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* Length = 324

 Score =  159 bits (405), Expect = 4e-48
 Identities = 76/240 (31%), Positives = 114/240 (47%), Gaps = 57/240 (23%)

Query: 1   MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR---------------------- 37
             ++ LP IS T   KLI AGY+SL ++  AS  D+S                       
Sbjct: 12  KTINDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDI 71

Query: 38  GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
             +TA ++ +E    + +I+T    LD +L GGI  R +TE  G  G GKTQL  QL+VN
Sbjct: 72  RFKTALEVKKERMN-VKKISTGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN 130

Query: 98  VQIPVEFGGLGGKAIYI--------------GKCLGF----------------YTEQSAV 127
           VQ+P E GGL GKA+YI               K LG                    Q A+
Sbjct: 131 VQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIAI 190

Query: 128 INYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLA 184
           ++ L + VS+   +K++++DS+  HFR  +    +LA+R + L+    +L  LA+ + +A
Sbjct: 191 VDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIA 250

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A Length = 343

 Score =  140 bits (353), Expect = 3e-40
 Identities = 56/234 (23%), Positives = 90/234 (38%), Gaps = 57/234 (24%)

Query: 7   PISATQRGKLISAGYTSLSSICSASSSDISR----------------------GTQTAWD 44
            I+     KL S G  ++  I   +   +                        G  TA++
Sbjct: 34  GINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANKLIEPGFLTAFE 93

Query: 45  MLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEF 104
             ++ +  +  ITT   + D +LGGGI    +TE  G    GKTQL   L V  Q+P   
Sbjct: 94  YSEKRKM-VFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAG 152

Query: 105 GGLGGKAIY--------------IGKCLGF----------------YTEQSAVINYL-DK 133
           G  GGK I+              I                         Q  +++Y+  K
Sbjct: 153 GYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAK 212

Query: 134 FVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLA 184
           F  E    K++IIDSI   FR  F    +LA R + L+ +  +L  +++++++A
Sbjct: 213 FHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVA 266

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* Length = 400

 Score =  132 bits (333), Expect = 6e-37
 Identities = 57/242 (23%), Positives = 93/242 (38%), Gaps = 60/242 (24%)

Query: 1   MEVSKL---PISATQRGKLISAGYTSLSSICSASSSDISR-------------------- 37
           + + KL    I+     KL  +G  +  ++  A   D+                      
Sbjct: 81  VPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARLV 140

Query: 38  --GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLA 95
             G  TA D      E L  +TT   +LD +LGGG+    +TE+ G    GK+QL   LA
Sbjct: 141 PMGFVTAADFHMRRSE-LICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLA 199

Query: 96  VNVQIPVEFGGLGGKAIY--------------IGKCLGF----------------YTEQS 125
           V  QIP++ GG  GK +Y              I +  G                    Q 
Sbjct: 200 VTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQL 259

Query: 126 AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFS 182
            +++   + +SE +   ++++DS+   +R  F    +L+ R   L+     L  LA +F 
Sbjct: 260 RLLDAAAQMMSESR-FSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFG 318

Query: 183 LA 184
           +A
Sbjct: 319 VA 320

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 Length = 349

 Score =  129 bits (325), Expect = 3e-36
 Identities = 64/244 (26%), Positives = 97/244 (39%), Gaps = 62/244 (25%)

Query: 2   EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISRGT--------------------- 39
            +  LP +      KL  AGY +L +I  AS  ++                         
Sbjct: 36  SIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAANLG 95

Query: 40  --QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
               A + L++    + RI+T    LD +LGGGI  + +TE+ G  G GKTQL   LAV 
Sbjct: 96  TFMRADEYLKKRAT-IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVM 154

Query: 98  VQIPVEFGGLGGKAIYI--------------GKCLGF----------------YTEQSAV 127
           VQ+P E GGL G  I+I               +  G                    Q  +
Sbjct: 155 VQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLL 214

Query: 128 INYLDKFVSE----HKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKK 180
           +   +  + E     + VK++I+DS+  HFR  ++    LA R + L+     L  LA  
Sbjct: 215 VQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANL 274

Query: 181 FSLA 184
           + +A
Sbjct: 275 YDIA 278

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* Length = 322

 Score =  122 bits (306), Expect = 1e-33
 Identities = 57/249 (22%), Positives = 98/249 (39%), Gaps = 67/249 (26%)

Query: 2   EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----------------------G 38
            ++ LP +  +   KL+ AGY     I +A+  +++                       G
Sbjct: 4   NLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCDLG 63

Query: 39  TQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
            ++  D+L++    + +++TS ++LD++LGGG+  + VTE  GV G GKTQ+  Q  VN+
Sbjct: 64  FKSGIDLLKQRST-VWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122

Query: 99  QIPVEF----------GGLGGKAIYI--------------GKCLGF-------------- 120
           Q P                  KA+YI               +  G               
Sbjct: 123 QNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARA 182

Query: 121 --YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLM 175
                Q      ++  + E  ++K+V+IDS+   FR+ +     LA R + L      L 
Sbjct: 183 YNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLN 242

Query: 176 NLAKKFSLA 184
            LA  F+  
Sbjct: 243 KLADLFNCV 251

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 Length = 243

 Score =  116 bits (291), Expect = 4e-32
 Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 34/163 (20%)

Query: 55  RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI 114
           +ITT   +LD +L GGI    +TE+ G    GKTQ+   LAV  Q+P++ GG  GKA+YI
Sbjct: 5   QITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYI 64

Query: 115 --------------GKCLGF----------------YTEQSAVINYLDKFVSEHKDVKVV 144
                          +  G                    Q+ ++      + E +   ++
Sbjct: 65  DTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESR-YALL 123

Query: 145 IIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLA 184
           I+DS    +R  +    +L+ R   L+     L+ LA +F +A
Sbjct: 124 IVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVA 166

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* Length = 220

 Score = 80.3 bits (199), Expect = 1e-18
 Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 46/163 (28%)

Query: 56  ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYI- 114
           ++T    LD++LGGG     +T++ G    GKT L +Q  +             K  Y+ 
Sbjct: 2   LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGLLSG---------KKVAYVD 52

Query: 115 -------------GKCLGFYTE----------------QSAVINYLDKFVSEHKDVKVVI 145
                         +  G   E                Q  VI  L K V    +  +V+
Sbjct: 53  TEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDS--NFALVV 110

Query: 146 IDSIAFHFRHGFVDLALRTRV--LSGIALKLMNLAKKFSLALL 186
           +DSI  H+R    +      +  LS     L+ +A+K ++ ++
Sbjct: 111 VDSITAHYR---AEENRSGLIAELSRQLQVLLWIARKHNIPVI 150

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Length = 525

 Score = 50.7 bits (121), Expect = 1e-07
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 5/68 (7%)

Query: 47  QEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG 106
             E +++A++ T     D+I  GG+     T + G  G GKT   IQ   N         
Sbjct: 12  NSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYN-----GIIE 66

Query: 107 LGGKAIYI 114
                +++
Sbjct: 67  FDEPGVFV 74

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* Length = 525

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 28/166 (16%), Positives = 47/166 (28%), Gaps = 42/166 (25%)

Query: 45  MLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEF 104
           M   ++ S  R+++    LD + GGG     +    G  G GKT L  +   N       
Sbjct: 252 MRLTQRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVEN------A 305

Query: 105 GGLGGKAIYIG------------KCLGFYTEQ------------SAVINYLDKFVS---- 136
                +AI                  G   E+                  L+  +     
Sbjct: 306 CANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKS 365

Query: 137 --EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKK 180
                    + IDS++     G  + A R        + +   AK+
Sbjct: 366 EINDFKPARIAIDSLSA-LARGVSNNAFRQ-----FVIGVTGYAKQ 405

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} Length = 235

 Score = 47.7 bits (114), Expect = 7e-07
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 10/64 (15%)

Query: 53  LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL--GGK 110
           ++R++T   D D ++ GGI       + G PG GKT   +             GL  G  
Sbjct: 2   VSRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAK--------GLRDGDP 53

Query: 111 AIYI 114
            IY+
Sbjct: 54  CIYV 57

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} Length = 247

 Score = 47.4 bits (113), Expect = 7e-07
 Identities = 23/62 (37%), Positives = 27/62 (43%), Gaps = 10/62 (16%)

Query: 55  RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL--GGKAI 112
           R+ T    +D IL GGI  R V  + G PG GKT    Q   N        GL  G   I
Sbjct: 4   RVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWN--------GLKMGEPGI 55

Query: 113 YI 114
           Y+
Sbjct: 56  YV 57

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 8e-05
 Identities = 24/139 (17%), Positives = 42/139 (30%), Gaps = 30/139 (21%)

Query: 81  GVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIY---IGKCLGFYTEQSAVINYLDKFVSE 137
           GV G GKT + + + ++ ++  +        I+   +  C         V+  L K +  
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDF----KIFWLNLKNC----NSPETVLEMLQKLLY- 207

Query: 138 HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALL------EPNLA 191
             D         + + +     +    R L      L +  K +   LL           
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRL------LKS--KPYENCLLVLLNVQNAKAW 259

Query: 192 TTANLAESCLTCL--RDSG 208
              NL  SC   L  R   
Sbjct: 260 NAFNL--SCKILLTTRFKQ 276

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	226
2z43_A	324	DNA repair and recombination protein RADA; archaea	100.0
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	100.0
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	100.0
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	100.0
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	100.0
3io5_A	333	Recombination and repair protein; storage dimer, i	99.93
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	99.92
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	99.91
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	99.91
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	99.9
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	99.9
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	99.89
1xp8_A	366	RECA protein, recombinase A; recombination, radior	99.89
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.89
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	99.89
1u94_A	356	RECA protein, recombinase A; homologous recombinat	99.89
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	99.88
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	99.88
2r6a_A	454	DNAB helicase, replicative helicase; replication,	99.88
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.87
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	99.85
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	99.84
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	99.84
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	99.83
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	99.81
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.78
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.77
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.72
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.7
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	99.67
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.51
3bs4_A	260	Uncharacterized protein PH0321; structural genomic	99.49
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.37
1b22_A	114	DNA repair protein RAD51; DNA binding, riken struc	99.1
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	98.92
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	98.88
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.87
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	98.86
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	98.85
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	98.84
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.84
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	98.83
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	98.82
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	98.81
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.8
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	98.79
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	98.78
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	98.76
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.72
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.72
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.72
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.72
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.71
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	98.71
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.69
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	98.68
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	98.66
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.66
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.65
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.63
1g6h_A	257	High-affinity branched-chain amino acid transport	98.62
3bos_A	242	Putative DNA replication factor; P-loop containing	98.62
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.61
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	98.6
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	98.6
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.59
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	98.59
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.58
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.58
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.58
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.57
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.57
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.57
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	98.56
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	98.55
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	98.55
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.53
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	98.53
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.51
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	98.5
1sgw_A	214	Putative ABC transporter; structural genomics, P p	98.5
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	98.49
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	98.48
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.47
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	98.46
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.46
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	98.46
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.44
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.42
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.42
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.41
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.4
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	98.4
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	98.39
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.39
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	98.38
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.37
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.37
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	98.37
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.36
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	98.36
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.35
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.35
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.35
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.34
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.33
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.33
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.33
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	98.32
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	98.31
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	98.3
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	98.29
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	98.29
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.29
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.29
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.27
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	98.26
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.26
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.25
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.25
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.24
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.24
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	98.24
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.22
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	98.2
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.2
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.19
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.19
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.19
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.19
2qgz_A	308	Helicase loader, putative primosome component; str	98.18
2chg_A	226	Replication factor C small subunit; DNA-binding pr	98.17
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.16
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.15
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	98.14
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.14
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	98.13
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.13
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	98.12
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.12
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	98.12
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	98.11
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.1
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.09
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.09
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.08
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.08
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.08
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	98.05
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	98.05
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.04
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.03
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.03
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.02
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.02
2og2_A	359	Putative signal recognition particle receptor; nuc	98.02
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.02
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	98.01
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	98.01
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.01
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	97.99
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.98
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.98
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	97.98
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.97
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	97.95
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.93
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	97.89
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	97.89
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.88
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.87
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	97.86
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.86
3ice_A	422	Transcription termination factor RHO; transcriptio	97.85
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.84
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	97.84
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.84
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.81
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	97.81
3pvs_A	447	Replication-associated recombination protein A; ma	97.8
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.78
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	97.78
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.77
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.77
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.77
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	97.75
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.74
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.73
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	97.72
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	97.71
3co5_A	143	Putative two-component system transcriptional RES	97.7
2fna_A	357	Conserved hypothetical protein; structural genomic	97.7
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.7
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.69
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.69
2va8_A	715	SSO2462, SKI2-type helicase; hydrolase, DNA repair	97.69
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	97.69
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.66
3end_A	307	Light-independent protochlorophyllide reductase ir	97.66
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.65
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.65
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	97.65
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.64
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.64
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.61
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.6
2zj8_A	720	DNA helicase, putative SKI2-type helicase; RECA fo	97.55
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.54
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.54
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.54
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	97.54
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	97.53
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.53
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	97.51
3l0o_A	427	Transcription termination factor RHO; helicase, RH	97.51
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	97.51
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	97.5
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.5
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.49
1z3e_B	73	DNA-directed RNA polymerase alpha chain; bacterial	97.49
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.45
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.45
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.44
2xxa_A	433	Signal recognition particle protein; protein trans	97.44
1fx0_A	507	ATP synthase alpha chain; latent ATPase, thermal s	97.43
1wcn_A	70	Transcription elongation protein NUSA; RNA-binding	97.42
2ck3_A	510	ATP synthase subunit alpha\, mitochondrial; hydrol	97.4
4a8j_A	361	Elongator complex protein 4; transcription; 2.10A	97.4
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.4
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.4
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.39
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.38
1tue_A	212	Replication protein E1; helicase, replication, E1E	97.38
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.36
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	97.35
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	97.35
3gfk_B	79	DNA-directed RNA polymerase subunit alpha; protein	97.34
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.33
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.33
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.3
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.29
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.29
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.28
3k4g_A	86	DNA-directed RNA polymerase subunit alpha; bacteri	97.27
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.26
2kz3_A	83	Putative uncharacterized protein RAD51L3; RAD51D,	97.26
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	97.26
2chq_A	319	Replication factor C small subunit; DNA-binding pr	97.25
3gqb_B	464	V-type ATP synthase beta chain; A3B3, V-ATPase, AT	97.24
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	97.24
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.23
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.23
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	97.23
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.22
3oaa_A	513	ATP synthase subunit alpha; rossmann fold, hydrola	97.22
2qe7_A	502	ATP synthase subunit alpha; blockage of ATP hydrol	97.21
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	97.21
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.2
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.2
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.18
3pey_A	395	ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A	97.17
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.17
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	97.16
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.13
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.11
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.1
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.1
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.09
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.09
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.09
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.07
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.03
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.03
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.03
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.02
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.02
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	97.01
2gxq_A	207	Heat resistant RNA dependent ATPase; RNA helicase,	97.01
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.0
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.99
2p6r_A	702	Afuhel308 helicase; protein-DNA complex, SF2 helic	96.99
3vr4_D	465	V-type sodium ATPase subunit D; V-ATPase, rotary m	96.98
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.97
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.96
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.95
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.94
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.93
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	96.92
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	96.91
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.88
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	96.87
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.86
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.86
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	96.85
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.84
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.83
1coo_A	98	RNA polymerase alpha subunit; transcription regula	96.83
3igf_A	374	ALL4481 protein; two-domained protein consisting o	96.81
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.81
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.8
3vr4_A	600	V-type sodium ATPase catalytic subunit A; V-ATPase	96.79
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.79
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.78
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.77
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.76
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.76
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.76
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	96.73
3fe2_A	242	Probable ATP-dependent RNA helicase DDX5; DEAD, AD	96.73
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.72
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.72
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.71
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.7
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.7
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.7
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.68
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.66
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	96.66
1u9l_A	70	Transcription elongation protein NUSA; escherichia	96.65
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.65
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.64
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	96.63
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.63
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.63
3gqb_A	578	V-type ATP synthase alpha chain; A3B3, V-ATPase, A	96.63
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.63
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.62
3mfy_A	588	V-type ATP synthase alpha chain; A-type ATP syntha	96.62
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.62
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.58
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.57
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.57
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.56
4f92_B	1724	U5 small nuclear ribonucleoprotein 200 kDa helica;	96.55
1hv8_A	367	Putative ATP-dependent RNA helicase MJ0669; RNA-bi	96.55
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.53
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.52
2c61_A	469	A-type ATP synthase non-catalytic subunit B; hydro	96.5
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.5
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.5
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.48
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.48
1via_A	175	Shikimate kinase; structural genomics, transferase	96.46
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	96.46
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.44
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.44
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.43
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.42
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.41
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.4
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.39
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.39
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.39
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.37
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.36
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.35
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	96.33
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.3
3fwy_A	314	Light-independent protochlorophyllide reductase I	96.3
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	96.3
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.29
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.29
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	96.29
1vec_A	206	ATP-dependent RNA helicase P54; DEAD-box protein,	96.29
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.28
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.28
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	96.26
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	96.25
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	96.24
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	96.23
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.23
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	96.19
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.19
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.19
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	96.19
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.18
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	96.17
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	96.16
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.16
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.15
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.14
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	96.12
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.12
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.11
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.11
3eiq_A	414	Eukaryotic initiation factor 4A-I; PDCD4, anti-onc	96.1
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	96.1
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.09
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.08
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	96.07
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.07
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.06
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.03
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.01
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.0
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	96.0
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.0
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.97
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	95.95
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.94
3fht_A	412	ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box	95.94
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.93
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	95.93
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.91
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	95.9
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	95.9
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	95.88
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	95.85
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	95.84
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	95.84
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.83
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	95.82
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.81
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.77
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	95.76
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	95.75
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.75
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.74
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.73
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.71
3cwq_A	209	Para family chromosome partitioning protein; alpha	95.71
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.69
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.69
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	95.69
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	95.67
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	95.67
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	95.66
2r44_A	331	Uncharacterized protein; putative ATPase, structur	95.66
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.65
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	95.65
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.63
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	95.63
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	95.59
1t6n_A	220	Probable ATP-dependent RNA helicase; RECA-like fol	95.59
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	95.58
2v6i_A	431	RNA helicase; membrane, hydrolase, transmembrane,	95.57
1q0u_A	219	Bstdead; DEAD protein, RNA binding protein; 1.85A	95.57
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.57
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.54
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	95.52
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	95.5
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.5
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	95.49
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.48
2db3_A	434	ATP-dependent RNA helicase VASA; DEAD-BOX, protein	95.46
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.43
2pl3_A	236	Probable ATP-dependent RNA helicase DDX10; DEAD, s	95.41
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	95.4
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.39
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	95.39
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.36
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	95.36
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.35
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	95.35
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	95.32
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	95.32
3ber_A	249	Probable ATP-dependent RNA helicase DDX47; DEAD, A	95.32
1s2m_A	400	Putative ATP-dependent RNA helicase DHH1; ATP-bind	95.3
1qde_A	224	EIF4A, translation initiation factor 4A; DEAD box	95.3
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	95.3
1xti_A	391	Probable ATP-dependent RNA helicase P47; alpha-bet	95.29
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.27
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	95.27
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	95.26
3sqw_A	579	ATP-dependent RNA helicase MSS116, mitochondrial;	95.25
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.25
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	95.24
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.23
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	95.2
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	95.2
3fmp_B	479	ATP-dependent RNA helicase DDX19B; nuclear porin,	95.17
2oxc_A	230	Probable ATP-dependent RNA helicase DDX20; DEAD, s	95.15
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	95.12
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	95.12
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	95.12
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	95.1
1e69_A	322	Chromosome segregation SMC protein; structural mai	95.09
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.05
3bor_A	237	Human initiation factor 4A-II; translation initiat	95.05
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.05
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	94.98
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	94.98
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	94.98
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	94.97
3i5x_A	563	ATP-dependent RNA helicase MSS116; protein-RNA com	94.94
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	94.94
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	94.93
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	94.92
2wji_A	165	Ferrous iron transport protein B homolog; membrane	94.91
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	94.89
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	94.87
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	94.84
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	94.82
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	94.82
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	94.76
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	94.75
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	94.74
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	94.74
1e9r_A	437	Conjugal transfer protein TRWB; coupling protein,	94.73
3pg5_A	361	Uncharacterized protein; structural genomics, PSI-	94.66

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=100.00  E-value=6.9e-36  Score=257.10  Aligned_cols=196  Identities=38%  Similarity=0.554  Sum_probs=126.6

Q ss_pred             CCCCCCC-CCHHHHHHHHhCCCccHHHHHhCChhHHhh----------------------chHhHHHHHHHhhcccCcee
Q 036464            1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQESLARIT   57 (226)
Q Consensus         1 ~~~~~l~-l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----------------------~~~~a~~l~~~~~~~~~~i~   57 (226)
                      +||++|| |++++++||+++||+|+++++.+++++|++                      .+.+|.+++++. ....+++
T Consensus        12 ~~~~~l~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~   90 (324)
T 2z43_A           12 KTINDLPGISQTVINKLIEAGYSSLETLAVASPQDLSVAAGIPLSTAQKIIKEARDALDIRFKTALEVKKER-MNVKKIS   90 (324)
T ss_dssp             ------------------------------------------------------------CCCCHHHHHHHH-CSCCEEC
T ss_pred             ccHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHhhCCCHHHHHHHHHHHHhhcccCccchhhhhhhh-ccCCccc
Confidence            4799999 999999999999999999999999998886                      456778887654 6789999


Q ss_pred             cCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCch---------------
Q 036464           58 TSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYT---------------  122 (226)
Q Consensus        58 Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~---------------  122 (226)
                      ||++.||.+|+||+++|++++|+|+||+|||+||++++.+++.|.++++.+++|+||++|.....               
T Consensus        91 TG~~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~  170 (324)
T 2z43_A           91 TGSQALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDID  170 (324)
T ss_dssp             CSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHH
T ss_pred             CCchhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHH
Confidence            99999999999999999999999999999999999999999888777777899999998842101               


Q ss_pred             ---------------HHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHHHHcCCE
Q 036464          123 ---------------EQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSLA  184 (226)
Q Consensus       123 ---------------~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la~~~~~~  184 (226)
                                     ++...+..+..++++..++++|||||++++++.++.   +...|++.+.++++.|+++++++|++
T Consensus       171 ~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~  250 (324)
T 2z43_A          171 NVMNNIYYIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIA  250 (324)
T ss_dssp             HHHHTEEEEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred             HHhccEEEEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCE
Confidence                           112234556666766358999999999999876542   35567778999999999999999999


Q ss_pred             EEEeccccccCCC
Q 036464          185 LLEPNLATTANLA  197 (226)
Q Consensus       185 vi~~nq~~~~~~~  197 (226)
                      ||++||+++..+.
T Consensus       251 Vi~~nq~~~~~~~  263 (324)
T 2z43_A          251 VIITNQVMARPDM  263 (324)
T ss_dssp             EEEEEEC------
T ss_pred             EEEEcceeecCCC
Confidence            9999999987654

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=100.00  E-value=7.5e-36  Score=258.80  Aligned_cols=195  Identities=30%  Similarity=0.422  Sum_probs=127.1

Q ss_pred             CCCCCC---CCHHHHHHHHhCCCccHHHHHhCChhHHhh----------------------chHhHHHHHHHhhcccCce
Q 036464            2 EVSKLP---ISATQRGKLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQESLARI   56 (226)
Q Consensus         2 ~~~~l~---l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----------------------~~~~a~~l~~~~~~~~~~i   56 (226)
                      ||+.|+   |++.+++||+++||+|+++++.+++.+|.+                      .+.+|.+++++. .+..++
T Consensus        26 ~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~is~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~i  104 (343)
T 1v5w_A           26 DIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRALCNVKGLSEAKVDKIKEAANKLIEPGFLTAFEYSEKR-KMVFHI  104 (343)
T ss_dssp             ------------------------------------------------------------CCSEEHHHHHHHG-GGCCCB
T ss_pred             cHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCCCHHHHHHHHHHHHhhcccCCCcHHHHHhhh-ccccee
Confidence            788888   999999999999999999999999998876                      456777887665 668899


Q ss_pred             ecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc---------------
Q 036464           57 TTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY---------------  121 (226)
Q Consensus        57 ~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~---------------  121 (226)
                      +||++.||.+|+||+++|++++|+|+||+|||+||++++.++++|..+++.+++|+||++|....               
T Consensus       105 ~TG~~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~  184 (343)
T 1v5w_A          105 TTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDH  184 (343)
T ss_dssp             CCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCH
T ss_pred             ecCChhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCH
Confidence            99999999999999999999999999999999999999999988887777889999999885111               


Q ss_pred             ---------------hHHHHHHHHHHHHHhhC-CCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHHHHcC
Q 036464          122 ---------------TEQSAVINYLDKFVSEH-KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFS  182 (226)
Q Consensus       122 ---------------~~~~~~l~~l~~~l~~~-~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la~~~~  182 (226)
                                     .+...++..+.+++.+. .++++|||||++++++.++.   +...|++.+.++++.|+++++++|
T Consensus       185 ~~~l~~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~  264 (343)
T 1v5w_A          185 DAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYN  264 (343)
T ss_dssp             HHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhC
Confidence                           11223344556667663 48999999999999876543   456677789999999999999999


Q ss_pred             CEEEEeccccccCCC
Q 036464          183 LALLEPNLATTANLA  197 (226)
Q Consensus       183 ~~vi~~nq~~~~~~~  197 (226)
                      ++||++||+++..+.
T Consensus       265 ~~Vi~~nq~~~~~~~  279 (343)
T 1v5w_A          265 VAVFVTNQMTADPGA  279 (343)
T ss_dssp             CEEEEEECC------
T ss_pred             CEEEEEeeceecCCC
Confidence            999999999987765

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=100.00  E-value=8.3e-35  Score=249.84  Aligned_cols=214  Identities=30%  Similarity=0.457  Sum_probs=164.7

Q ss_pred             CCCCCC-CCHHHHHHHHhCCCccHHHHHhCChhHHhh----------------------chHhHHHHHHHhhcccCceec
Q 036464            2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQESLARITT   58 (226)
Q Consensus         2 ~~~~l~-l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----------------------~~~~a~~l~~~~~~~~~~i~T   58 (226)
                      ||+.|+ +++.+++||+++||+|++|++..++.+|++                      .+.+|.+++++. ....+++|
T Consensus         4 ~~~~l~gi~~~~~~kL~~~gi~t~~~~~~~~~~~L~~~~gis~~~a~~~i~~a~~~~~~~~~~~~~~~~~~-~~~~~i~T   82 (322)
T 2i1q_A            4 NLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGARDLCDLGFKSGIDLLKQR-STVWKLST   82 (322)
T ss_dssp             -CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHHHHHTTCSCCCTHHHHHHH-TTCCEECC
T ss_pred             cHhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHhhCcCHHHHHHHHHHHHHhhhhcCCcHHHHHHHh-ccCCeecC
Confidence            899999 999999999999999999999999999987                      355666776544 66889999


Q ss_pred             CchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhcccc---------ccCCCC-CeEEEEeccccCchH-----
Q 036464           59 SCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPV---------EFGGLG-GKAIYIGKCLGFYTE-----  123 (226)
Q Consensus        59 g~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~---------~~~~~~-~~vlyi~~e~~~~~~-----  123 (226)
                      |++.||.+|+||+++|++++|+|+||+|||+||++++.++++|.         +.++.+ ++|+||++|.....+     
T Consensus        83 G~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~  162 (322)
T 2i1q_A           83 SSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQM  162 (322)
T ss_dssp             SCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHH
T ss_pred             CChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999987664         223232 799999988421111     


Q ss_pred             -------------------------HHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHH
Q 036464          124 -------------------------QSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLM  175 (226)
Q Consensus       124 -------------------------~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~  175 (226)
                                               +...+..+.+.+++..++++|||||++.+++.++.   +...|++.+.++++.|+
T Consensus       163 ~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~  242 (322)
T 2i1q_A          163 AEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLN  242 (322)
T ss_dssp             HHHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence                                     11233455666665358999999999999876543   35567778999999999


Q ss_pred             HHHHHcCCEEEEeccccccCCCCCCcCCcCCCCchhHHHHHh
Q 036464          176 NLAKKFSLALLEPNLATTANLAESCLTCLRDSGSRKAVAAAA  217 (226)
Q Consensus       176 ~la~~~~~~vi~~nq~~~~~~~~~~~~~~~~sg~~~~~~~~~  217 (226)
                      ++++++|++||++||+++..+... ....+..|+..+...+|
T Consensus       243 ~la~~~~~~vi~~nq~~~~~~~~~-g~~~~~~g~~~~~~~~d  283 (322)
T 2i1q_A          243 KLADLFNCVVLVTNQVSAKPDAFF-GMAEQAIGGHIVGHAAT  283 (322)
T ss_dssp             HHHHHTTCEEEEEECEECC--------CCEESSHHHHHHHCS
T ss_pred             HHHHHhCCEEEEECceeecCCCCC-CCCcCCCCcHHHHhcCc
Confidence            999999999999999998765422 11234556554544444

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=100.00  E-value=2.1e-34  Score=253.83  Aligned_cols=194  Identities=29%  Similarity=0.432  Sum_probs=156.6

Q ss_pred             CCCCCC---CCHHHHHHHHhCCCccHHHHHhCChhHHhh----------------------chHhHHHHHHHhhcccCce
Q 036464            2 EVSKLP---ISATQRGKLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQESLARI   56 (226)
Q Consensus         2 ~~~~l~---l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----------------------~~~~a~~l~~~~~~~~~~i   56 (226)
                      ||+.|+   |++.+++||+++||+|+++++.+++.+|++                      .+.+|.++++++ ....++
T Consensus        82 ~~~~l~~~gi~~~~~~~L~~ag~~tv~~~~~~~~~~L~~~~gis~~~~~~i~~~a~~~~~~~~~ta~~l~~~~-~~~~~i  160 (400)
T 3lda_A           82 PIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEAARLVPMGFVTAADFHMRR-SELICL  160 (400)
T ss_dssp             BGGGGCCTTCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHHHHHHHSCCSCCCHHHHHHHH-HTSCEE
T ss_pred             CHHHHHhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHHhCCCHHHHHHHHHHHHHhccccCCCHHHHHhhh-ccCCcc
Confidence            455555   999999999999999999999999999987                      466778887765 678999


Q ss_pred             ecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc---------------
Q 036464           57 TTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY---------------  121 (226)
Q Consensus        57 ~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~---------------  121 (226)
                      +||++.||++|+||+++|++++|+||||+|||||+++++...++|++.++.+++++||++|....               
T Consensus       161 ~TG~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~  240 (400)
T 3lda_A          161 TTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDP  240 (400)
T ss_dssp             CCSCHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCH
T ss_pred             ccCChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCCh
Confidence            99999999999999999999999999999999999999999999988888889999999874100               


Q ss_pred             ---------------hHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHHHHcCC
Q 036464          122 ---------------TEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAKKFSL  183 (226)
Q Consensus       122 ---------------~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la~~~~~  183 (226)
                                     .++...+..+.+.+... ++++|||||++++++.++.   +...|++.+.++++.|+++++++|+
T Consensus       241 ~~vleni~~~~~~~~~~~~~~l~~~~~~l~~~-~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gi  319 (400)
T 3lda_A          241 DDALNNVAYARAYNADHQLRLLDAAAQMMSES-RFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGV  319 (400)
T ss_dssp             HHHHHTEEEEECCSHHHHHHHHHHHHHHHHHS-CEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HhHhhcEEEeccCChHHHHHHHHHHHHHHHhc-CCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCC
Confidence                           11122334445555554 7999999999998876554   3567888889999999999999999


Q ss_pred             EEEEeccccccCCC
Q 036464          184 ALLEPNLATTANLA  197 (226)
Q Consensus       184 ~vi~~nq~~~~~~~  197 (226)
                      +||++||++...++
T Consensus       320 tVIlv~Hv~~~~~g  333 (400)
T 3lda_A          320 AVVVTNQVVAQVDG  333 (400)
T ss_dssp             EEEEEEEC------
T ss_pred             EEEEEEeecccCCc
Confidence            99999999876655

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=100.00  E-value=2.9e-33  Score=243.08  Aligned_cols=195  Identities=33%  Similarity=0.500  Sum_probs=160.4

Q ss_pred             CCCCCCC-CCHHHHHHHHhCCCccHHHHHhCChhHHhh-----------------------chHhHHHHHHHhhcccCce
Q 036464            1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR-----------------------GTQTAWDMLQEEQESLARI   56 (226)
Q Consensus         1 ~~~~~l~-l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~-----------------------~~~~a~~l~~~~~~~~~~i   56 (226)
                      +||++|| +++.+++||+++||+|+++++.+++.+|++                       .+.+|.++++++ ....++
T Consensus        35 ~~l~~l~Gi~~~~~~kL~~ag~~t~~~~~~~~~~~L~~~~~~s~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~i  113 (349)
T 1pzn_A           35 RSIEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAARKAANLGTFMRADEYLKKR-ATIGRI  113 (349)
T ss_dssp             CCSSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHHHHHCSTTSCEEHHHHHHHH-HTCCEE
T ss_pred             ccHHHcCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhhcCCCHHHHHHHHHHHhhhccccCCccHHHHHhhh-ccCCee
Confidence            4789999 999999999999999999999999999886                       345778887765 568899


Q ss_pred             ecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC----------------
Q 036464           57 TTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF----------------  120 (226)
Q Consensus        57 ~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~----------------  120 (226)
                      +||++.||.+|+||+++|++++|+||||+|||||+++++..++.|++.++.+++|+||+++...                
T Consensus       114 sTG~~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~  193 (349)
T 1pzn_A          114 STGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDP  193 (349)
T ss_dssp             CCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCH
T ss_pred             cCCCHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCH
Confidence            9999999999999999999999999999999999999999988777666667899999986310                


Q ss_pred             --------------chHHHHHHHHHHHHHhhC----CCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHHH
Q 036464          121 --------------YTEQSAVINYLDKFVSEH----KDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAK  179 (226)
Q Consensus       121 --------------~~~~~~~l~~l~~~l~~~----~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la~  179 (226)
                                    ..++...+..+..++.+.    .++++|||||++++++.++.   +...|++.+.++++.|+++++
T Consensus       194 ~~v~~ni~~~~~~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~  273 (349)
T 1pzn_A          194 DEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLAN  273 (349)
T ss_dssp             HHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhCEEEEecCChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence                          111223345556666652    47999999999999876543   456677788999999999999


Q ss_pred             HcCCEEEEeccccccCC
Q 036464          180 KFSLALLEPNLATTANL  196 (226)
Q Consensus       180 ~~~~~vi~~nq~~~~~~  196 (226)
                      ++|++||++||.+..++
T Consensus       274 ~~~~tvii~~h~~~~~~  290 (349)
T 1pzn_A          274 LYDIAVFVTNQVQARPD  290 (349)
T ss_dssp             HTTCEEEEEEECC----
T ss_pred             HcCcEEEEEcccccccc
Confidence            99999999999987654

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=99.93  E-value=1.7e-25  Score=189.82  Aligned_cols=150  Identities=14%  Similarity=0.169  Sum_probs=99.5

Q ss_pred             ccCceecCchhHHHhhC----CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC-------
Q 036464           52 SLARITTSCADLDNILG----GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF-------  120 (226)
Q Consensus        52 ~~~~i~Tg~~~LD~~l~----GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~-------  120 (226)
                      ...+++||+++||++|+    ||+++| +++|+||||+||||||+|++.+++.    .+.+++|+|||+|...       
T Consensus         3 ~~~risTGi~~LD~~LGg~~~GGl~~G-iteI~G~pGsGKTtL~Lq~~~~~~~----~g~g~~vlyId~E~s~~~~ra~~   77 (333)
T 3io5_A            3 HMDVVRTKIPMMNIALSGEITGGMQSG-LLILAGPSKSFKSNFGLTMVSSYMR----QYPDAVCLFYDSEFGITPAYLRS   77 (333)
T ss_dssp             ---CBCCSCHHHHHHHHSSTTCCBCSE-EEEEEESSSSSHHHHHHHHHHHHHH----HCTTCEEEEEESSCCCCHHHHHH
T ss_pred             CCCEecCCCHHHHHHhCCCCCCCCcCC-eEEEECCCCCCHHHHHHHHHHHHHh----cCCCceEEEEeccchhhHHHHHH
Confidence            35789999999999999    999999 9999999999999999999999872    1237899999988411       


Q ss_pred             --------------chHHHHHHHHHHHH--HhhCCCceEEEEcCCchhhh-cCcCCh-H-------HHHHHHHHHHHHHH
Q 036464          121 --------------YTEQSAVINYLDKF--VSEHKDVKVVIIDSIAFHFR-HGFVDL-A-------LRTRVLSGIALKLM  175 (226)
Q Consensus       121 --------------~~~~~~~l~~l~~~--l~~~~~~~lvVIDsl~~l~~-~~~~~~-~-------~r~~~l~~~~~~L~  175 (226)
                                    ..++.. +..++.+  +++ .++++|||||++++++ .+++.. .       .+.+.+.+.++.|.
T Consensus        78 lGvd~d~llv~~~~~~E~~~-l~i~~~l~~i~~-~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~  155 (333)
T 3io5_A           78 MGVDPERVIHTPVQSLEQLR-IDMVNQLDAIER-GEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVT  155 (333)
T ss_dssp             TTCCGGGEEEEECSBHHHHH-HHHHHHHHTCCT-TCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHH
T ss_pred             hCCCHHHeEEEcCCCHHHHH-HHHHHHHHHhhc-cCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHH
Confidence                          112210 1222222  333 4799999999999984 444321 1       25667888899999


Q ss_pred             HHHHHcCCEEEEeccccccCCCCCCcCCcCCCCch
Q 036464          176 NLAKKFSLALLEPNLATTANLAESCLTCLRDSGSR  210 (226)
Q Consensus       176 ~la~~~~~~vi~~nq~~~~~~~~~~~~~~~~sg~~  210 (226)
                      ++++++|++||+|||+++ ++.....|. ...|.+
T Consensus       156 ~~ak~~~i~vi~tNQV~k-~G~~fg~p~-~~GG~~  188 (333)
T 3io5_A          156 PYFSTKNIPCIAINHTYE-TQEMFSKTV-MGGGTG  188 (333)
T ss_dssp             HHHHHTTCEEEEEEEC-----------------CC
T ss_pred             HHHHHhCCEEEEECCeee-cCcccCCCC-CCCcce
Confidence            999999999999999998 654333333 344444

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=99.92  E-value=2.9e-24  Score=175.80  Aligned_cols=145  Identities=31%  Similarity=0.447  Sum_probs=107.5

Q ss_pred             ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchH--------
Q 036464           52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE--------  123 (226)
Q Consensus        52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~--------  123 (226)
                      +..+++||++.||++|+||+++|++++|+||||+|||+|+.+++.++++|+.+++.+.+++|++++.....+        
T Consensus         2 ~~~~i~tG~~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~   81 (243)
T 1n0w_A            2 EIIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAER   81 (243)
T ss_dssp             CCCEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHH
T ss_pred             CceEecCCChHHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHH
Confidence            457899999999999999999999999999999999999999999988776666678899999987410111        


Q ss_pred             ----------------------HHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHH
Q 036464          124 ----------------------QSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLA  178 (226)
Q Consensus       124 ----------------------~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la  178 (226)
                                            ....+..+.+.+... ++++||||+++.+++..+.   +..+|++.+.+++..|++++
T Consensus        82 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~  160 (243)
T 1n0w_A           82 YGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVES-RYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLA  160 (243)
T ss_dssp             TTCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHS-CEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHhhCeEEEecCCHHHHHHHHHHHHHHHhcC-CceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHH
Confidence                                  111233455555554 7999999999988765432   22455666889999999999


Q ss_pred             HHcCCEEEEeccccccCCC
Q 036464          179 KKFSLALLEPNLATTANLA  197 (226)
Q Consensus       179 ~~~~~~vi~~nq~~~~~~~  197 (226)
                      +++|++||++||..+..+.
T Consensus       161 ~~~~~tvi~~~h~~~~~~~  179 (243)
T 1n0w_A          161 DEFGVAVVITNQVVAQVDG  179 (243)
T ss_dssp             HHHCCEEEEEC--------
T ss_pred             HHcCCEEEEEeeeeecCCC
Confidence            9999999999999887654

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=99.91  E-value=1.4e-24  Score=187.08  Aligned_cols=153  Identities=20%  Similarity=0.253  Sum_probs=119.0

Q ss_pred             cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-----------
Q 036464           51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-----------  119 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-----------  119 (226)
                      ....+++||++.||+++ ||+++|++++|+|+||+|||+|+++++.+++.      .+.+|+||+.|+.           
T Consensus        24 ~~~~gi~TG~~~LD~~~-gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~------~g~~Vl~fSlEms~~ql~~Rlls~   96 (338)
T 4a1f_A           24 LEVTGIPTGFVQLDNYT-SGFNKGSLVIIGARPSMGKTSLMMNMVLSALN------DDRGVAVFSLEMSAEQLALRALSD   96 (338)
T ss_dssp             TCCCSBCCSCHHHHHHH-CSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH------TTCEEEEEESSSCHHHHHHHHHHH
T ss_pred             CCcCcccCCChHHHHHh-cCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH------cCCeEEEEeCCCCHHHHHHHHHHH
Confidence            35789999999999999 69999999999999999999999999999883      6789999998850           


Q ss_pred             -------------CchHHH--------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCCh
Q 036464          120 -------------FYTEQS--------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDL  160 (226)
Q Consensus       120 -------------~~~~~~--------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~  160 (226)
                                   ...++.                          .+...+.++.++++++++||||+++.+.....  .
T Consensus        97 ~~~v~~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~--~  174 (338)
T 4a1f_A           97 LTSINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKA--T  174 (338)
T ss_dssp             HHCCCHHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHH--H
T ss_pred             hhCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCC--C
Confidence                         000000                          01122333333433799999999996643221  2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhH
Q 036464          161 ALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKA  212 (226)
Q Consensus       161 ~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~  212 (226)
                      ..|.+++.++++.|+.+|++++|+||+++|+++..+.    .+.+.++|+||++..
T Consensus       175 ~~r~~ei~~isr~LK~lAkel~vpVi~lsQl~R~~e~r~dkrP~lsDLreSg~Ieq  230 (338)
T 4a1f_A          175 KERHEQIAEISRELKTLARELEIPIIALVQLNRSLENRDDKRPILSDIKDSGGIEQ  230 (338)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHTSCEEEEEECCGGGGGSSSCSCCGGGSEETTEECC
T ss_pred             CChHHHHHHHHHHHHHHHHHcCCeEEEEEecCccccccccCCCChHhcccchhhhh
Confidence            3566778999999999999999999999999987653    477889999999754

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=99.91  E-value=1.1e-23  Score=180.27  Aligned_cols=150  Identities=17%  Similarity=0.196  Sum_probs=115.8

Q ss_pred             ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHH-------
Q 036464           52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ-------  124 (226)
Q Consensus        52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~-------  124 (226)
                      ...+++||++.||+++ ||+++|++++|+|+||+|||+|+++++.+++.      .+.+|+||+.|+  ..++       
T Consensus        47 ~~~~i~TG~~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~------~g~~vl~~slE~--s~~~l~~R~~~  117 (315)
T 3bh0_A           47 NITGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSD------NDDVVNLHSLEM--GKKENIKRLIV  117 (315)
T ss_dssp             SCCSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT------TTCEEEEEESSS--CHHHHHHHHHH
T ss_pred             CCCCccCChHHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH------cCCeEEEEECCC--CHHHHHHHHHH
Confidence            4678999999999999 89999999999999999999999999999873      458999999874  1000       


Q ss_pred             ----------------H-------------------------------HHHHHHHHHHhhCCCce--EEEEcCCchhhhc
Q 036464          125 ----------------S-------------------------------AVINYLDKFVSEHKDVK--VVIIDSIAFHFRH  155 (226)
Q Consensus       125 ----------------~-------------------------------~~l~~l~~~l~~~~~~~--lvVIDsl~~l~~~  155 (226)
                                      +                               .+...+.++.++. +++  +||||+++.+...
T Consensus       118 ~~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~~~i~~~i~~l~~~~-~~~~~lVVID~l~~l~~~  196 (315)
T 3bh0_A          118 TAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKN-PGKRVIVMIDYLQLLEPA  196 (315)
T ss_dssp             HHTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBHHHHHHHHHHHHHTS-SSCCEEEEEECGGGSBCS
T ss_pred             HHcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHHHHhc-CCCCeEEEEeCchhcCCC
Confidence                            0                               1112233333333 678  9999999976532


Q ss_pred             CcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhHH
Q 036464          156 GFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKAV  213 (226)
Q Consensus       156 ~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~~  213 (226)
                      .  ....|.+.+.++++.|+++|+++|++||+++|+++..+.    .+.+.+++.||+....
T Consensus       197 ~--~~~~r~~~i~~~~~~Lk~lAk~~~i~vi~lsql~r~~e~r~~~~p~l~dlr~sg~ie~~  256 (315)
T 3bh0_A          197 K--ANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQD  256 (315)
T ss_dssp             C--TTSCHHHHHHHHHHHHHHHHHHHTCEEEEEECCCGGGTTSSSCCCCGGGGTTTSHHHHH
T ss_pred             C--CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEeecCcccccCCCCCCCHHHhhhhhhhHhh
Confidence            2  223467789999999999999999999999999976653    3556678888876543

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=99.90  E-value=3.7e-24  Score=175.68  Aligned_cols=133  Identities=17%  Similarity=0.257  Sum_probs=102.6

Q ss_pred             cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-----------
Q 036464           51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-----------  119 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-----------  119 (226)
                      ++.++|+||++.||++|+||+++|++++|+|+||+|||+||+|++.+.+.     +.+.+|+|++.|..           
T Consensus         7 ~~i~ri~TGi~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~-----~~~~~v~~~s~E~~~~~~~~~~~~~   81 (251)
T 2zts_A            7 QPVRRVKSGIPGFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAE-----EYGEPGVFVTLEERARDLRREMASF   81 (251)
T ss_dssp             -CCCEECCSCTTTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHH-----HHCCCEEEEESSSCHHHHHHHHHTT
T ss_pred             CCCCeecCCcHHHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH-----hcCCCceeecccCCHHHHHHHHHHc
Confidence            56889999999999999999999999999999999999999999988653     34678999997740           


Q ss_pred             --Cch--------------------------------HHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHH
Q 036464          120 --FYT--------------------------------EQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTR  165 (226)
Q Consensus       120 --~~~--------------------------------~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~  165 (226)
                        ...                                .....++.+...+... +++++|||+++.+.....     +.+
T Consensus        82 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vviD~~~~l~~~~~-----~~~  155 (251)
T 2zts_A           82 GWDFEKYEKEGKIAIVDGVSSVVGLPSEEKFVLEDRFNVDNFLRYIYRVVKAI-NAKRLVIDSIPSIALRLE-----EER  155 (251)
T ss_dssp             TCCHHHHHHTTSEEEEC-------------------CCHHHHHHHHHHHHHHT-TCSEEEEECHHHHHHHSS-----SGG
T ss_pred             CCChHHHHhcCcchhhhhHHHHhhcccchhccccccccHHHHHHHHHHHHHhc-CCcEEEEEcHHHHhhhcc-----ChH
Confidence              000                                0011234455556554 789999999997765421     233


Q ss_pred             HHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          166 VLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       166 ~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      .+.+++..|+++++++|+++++++|+.+.
T Consensus       156 ~~~~~~~~L~~~a~~~~i~vi~~~q~~~~  184 (251)
T 2zts_A          156 KIREVLLKLNTILLEMGVTTILTTEAPDP  184 (251)
T ss_dssp             GHHHHHHHHHHHHHHHCCEEEEEECCC--
T ss_pred             HHHHHHHHHHHHHHHcCCCeEEEEEEecc
Confidence            45678899999999999999999998753

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=99.90  E-value=2e-23  Score=181.07  Aligned_cols=157  Identities=20%  Similarity=0.227  Sum_probs=116.0

Q ss_pred             cCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCch---------
Q 036464           53 LARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYT---------  122 (226)
Q Consensus        53 ~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~---------  122 (226)
                      ..+++||++.||++|+ ||+++|++++|+||||+||||||++++..++      ..+++|+||++|.....         
T Consensus        39 ~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~------~~gg~VlyId~E~s~~~~ra~rlgv~  112 (356)
T 3hr8_A           39 VEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ------KMGGVAAFIDAEHALDPVYAKNLGVD  112 (356)
T ss_dssp             CCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH------HTTCCEEEEESSCCCCHHHHHHHTCC
T ss_pred             CceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH------hcCCeEEEEecccccchHHHHHcCCc
Confidence            6889999999999999 9999999999999999999999999999987      35788999998741110         


Q ss_pred             ----------HHHHHHHHHHHHHhhCCCceEEEEcCCchhhh-cCcCC------hHHHHHHHHHHHHHHHHHHHHcCCEE
Q 036464          123 ----------EQSAVINYLDKFVSEHKDVKVVIIDSIAFHFR-HGFVD------LALRTRVLSGIALKLMNLAKKFSLAL  185 (226)
Q Consensus       123 ----------~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~-~~~~~------~~~r~~~l~~~~~~L~~la~~~~~~v  185 (226)
                                ..-..+..+..++.. .+++++||||+++++. .++..      ...+.+.+.++++.|++++++++++|
T Consensus       113 ~~~l~i~~~~~~e~~l~~~~~l~~~-~~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~lak~~~~tV  191 (356)
T 3hr8_A          113 LKSLLISQPDHGEQALEIVDELVRS-GVVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSVNKSKAVV  191 (356)
T ss_dssp             GGGCEEECCSSHHHHHHHHHHHHHT-SCCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHHHTSSCEE
T ss_pred             hhhhhhhhccCHHHHHHHHHHHhhh-cCCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhcCCEE
Confidence                      001223445555544 4789999999998875 33321      11245668889999999999999999


Q ss_pred             EEeccccccCCCCCCcCCcCCCCchhHHHHHh
Q 036464          186 LEPNLATTANLAESCLTCLRDSGSRKAVAAAA  217 (226)
Q Consensus       186 i~~nq~~~~~~~~~~~~~~~~sg~~~~~~~~~  217 (226)
                      |++||++++.+.....+ ....|.......++
T Consensus       192 I~inqv~~k~g~~fg~p-~~~~GG~~l~h~~~  222 (356)
T 3hr8_A          192 IFTNQIRMKIGVMFGSP-ETTTGGLALKFYAT  222 (356)
T ss_dssp             EEEEESSSCSSSSSCSC-SSCTHHHHHHHHCS
T ss_pred             EEEeeeeeccccccCCc-ccCCCcchhhhhCc
Confidence            99999987766533222 33455554444444

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=99.89  E-value=2.4e-23  Score=185.95  Aligned_cols=154  Identities=23%  Similarity=0.290  Sum_probs=114.7

Q ss_pred             cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------
Q 036464           53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-------------  119 (226)
Q Consensus        53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-------------  119 (226)
                      ..+++||++.||+++ ||+++|++++|+|+||+|||+|+++++.+++.     ..+.+|+||+.|+.             
T Consensus       180 ~~~i~tG~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~-----~~g~~vl~~slE~~~~~l~~R~~~~~~  253 (444)
T 2q6t_A          180 VAGVRTGFKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAAL-----KEGVGVGIYSLEMPAAQLTLRMMCSEA  253 (444)
T ss_dssp             ---CCCSCHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHH-----TTCCCEEEEESSSCHHHHHHHHHHHHT
T ss_pred             CCcccCCCHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-----hCCCeEEEEECCCCHHHHHHHHHHHHc
Confidence            578999999999999 89999999999999999999999999999873     24679999998740             


Q ss_pred             -----C------chHH--------------------------HHHHHHHHHHHhhCCCceEEEEcCCchhhhcC-cCChH
Q 036464          120 -----F------YTEQ--------------------------SAVINYLDKFVSEHKDVKVVIIDSIAFHFRHG-FVDLA  161 (226)
Q Consensus       120 -----~------~~~~--------------------------~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~-~~~~~  161 (226)
                           .      ..+.                          ..+...+.++..+. ++++||||+++.+.... .....
T Consensus       254 ~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~l~~~~~~l~~~~-~~~lIvID~l~~~~~~~~~~~~~  332 (444)
T 2q6t_A          254 RIDMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDDTPDLTLMEVRARARRLVSQN-QVGLIIIDYLQLMSGPGSGKSGE  332 (444)
T ss_dssp             TCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEECCTTCBHHHHHHHHHHHHHHS-CCCEEEEECGGGCBCC-------
T ss_pred             CCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEEcChhhcCCCcCCCCCC
Confidence                 0      0000                          01122334444444 79999999999765320 11123


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCC----CCcCCcCCCCchhHH
Q 036464          162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAE----SCLTCLRDSGSRKAV  213 (226)
Q Consensus       162 ~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~----~~~~~~~~sg~~~~~  213 (226)
                      .|.+.+.++++.|+++|+++|++||+++|+++..+..    +.+.+++.||+....
T Consensus       333 ~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~  388 (444)
T 2q6t_A          333 NRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQD  388 (444)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGG
T ss_pred             CHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHh
Confidence            5778899999999999999999999999999866543    567778888886553

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=99.89  E-value=6.9e-23  Score=178.51  Aligned_cols=139  Identities=24%  Similarity=0.298  Sum_probs=103.6

Q ss_pred             ccCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCch--------
Q 036464           52 SLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYT--------  122 (226)
Q Consensus        52 ~~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~--------  122 (226)
                      ...+++||++.||.+|+ ||+++|++++|+|+||+|||+||++++.+++      ..+++|+||++|.....        
T Consensus        51 ~~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~------~~g~~vlyi~~E~s~~~~~a~~~g~  124 (366)
T 1xp8_A           51 DVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQ------KAGGTCAFIDAEHALDPVYARALGV  124 (366)
T ss_dssp             CCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH------HTTCCEEEEESSCCCCHHHHHHTTC
T ss_pred             cCceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHH------HCCCeEEEEECCCChhHHHHHHcCC
Confidence            46789999999999999 9999999999999999999999999999987      35789999998841100        


Q ss_pred             -----------HHHHHHHHHHHHHhhCCCceEEEEcCCchhhh-cCcCCh-H-----HHHHHHHHHHHHHHHHHHHcCCE
Q 036464          123 -----------EQSAVINYLDKFVSEHKDVKVVIIDSIAFHFR-HGFVDL-A-----LRTRVLSGIALKLMNLAKKFSLA  184 (226)
Q Consensus       123 -----------~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~-~~~~~~-~-----~r~~~l~~~~~~L~~la~~~~~~  184 (226)
                                 ..-..+..++.++++ .++++|||||++.++. .+++.. .     .+.+.+.++++.|+.++++++++
T Consensus       125 d~~~l~i~~~~~~e~~l~~l~~l~~~-~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~  203 (366)
T 1xp8_A          125 NTDELLVSQPDNGEQALEIMELLVRS-GAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTA  203 (366)
T ss_dssp             CGGGCEEECCSSHHHHHHHHHHHHTT-TCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCE
T ss_pred             CHHHceeecCCcHHHHHHHHHHHHhc-CCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCE
Confidence                       001223444555544 4799999999998873 333211 1     23456889999999999999999


Q ss_pred             EEEeccccccCCC
Q 036464          185 LLEPNLATTANLA  197 (226)
Q Consensus       185 vi~~nq~~~~~~~  197 (226)
                      ||++||+++..+.
T Consensus       204 VI~~nq~~~~~~~  216 (366)
T 1xp8_A          204 AIFINQVREKIGV  216 (366)
T ss_dssp             EEEEEEC------
T ss_pred             EEEEEecccccCc
Confidence            9999999987754

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.89  E-value=4.5e-22  Score=161.39  Aligned_cols=143  Identities=36%  Similarity=0.550  Sum_probs=111.8

Q ss_pred             ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc----------
Q 036464           52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY----------  121 (226)
Q Consensus        52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~----------  121 (226)
                      +.++++||++.||++++||+++|+++.|.||||+|||||+..++.....|+..+..+++++|++.+....          
T Consensus         3 ~~~~i~tG~~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~   82 (231)
T 4a74_A            3 TIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQN   82 (231)
T ss_dssp             CCCEECCSCHHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred             cCCccCCCChhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999998887766666788999999763100          


Q ss_pred             --------------------hHHHHHHHHHHHHHh----hCCCceEEEEcCCchhhhcCcCC---hHHHHHHHHHHHHHH
Q 036464          122 --------------------TEQSAVINYLDKFVS----EHKDVKVVIIDSIAFHFRHGFVD---LALRTRVLSGIALKL  174 (226)
Q Consensus       122 --------------------~~~~~~l~~l~~~l~----~~~~~~lvVIDsl~~l~~~~~~~---~~~r~~~l~~~~~~L  174 (226)
                                          .++...+..+...+.    ...+++++|+|++++.++.....   ...|++.+.+++..|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l  162 (231)
T 4a74_A           83 RGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADL  162 (231)
T ss_dssp             TTSCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHhhcEEEEecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHH
Confidence                                111112334444444    13489999999999988765443   455666678899999


Q ss_pred             HHHHHHcCCEEEEecccccc
Q 036464          175 MNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       175 ~~la~~~~~~vi~~nq~~~~  194 (226)
                      +++++++|++||+++|..+.
T Consensus       163 ~~~~~~~g~tvi~vtH~~~~  182 (231)
T 4a74_A          163 HRLANLYDIAVFVTNQVQAN  182 (231)
T ss_dssp             HHHHHHHTCEEEEEEECC--
T ss_pred             HHHHHHCCCeEEEEeecccC
Confidence            99999999999999998775

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=99.89  E-value=1.2e-22  Score=181.26  Aligned_cols=151  Identities=19%  Similarity=0.232  Sum_probs=116.8

Q ss_pred             ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC-----------
Q 036464           52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF-----------  120 (226)
Q Consensus        52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~-----------  120 (226)
                      ...+++||++.||+++ ||+++|++++|+|+||+|||+|+++++.+++.      .+.+|+||+.|+..           
T Consensus       176 ~~~gi~TG~~~LD~~l-gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~------~g~~vl~fSlEms~~ql~~R~~~~~  248 (444)
T 3bgw_A          176 NITGVPSGFTELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSD------NDDVVNLHSLEMGKKENIKRLIVTA  248 (444)
T ss_dssp             SCCSBCCSCHHHHHHH-SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHH------TTCEEEEECSSSCTTHHHHHHHHHH
T ss_pred             CCCCcCCCcHHHHhhc-CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHH------cCCEEEEEECCCCHHHHHHHHHHHH
Confidence            3578999999999999 69999999999999999999999999999983      47899999988510           


Q ss_pred             --------------c-hHH---H-----------------------HHHHHHHHHHhhCCCce--EEEEcCCchhhhcCc
Q 036464          121 --------------Y-TEQ---S-----------------------AVINYLDKFVSEHKDVK--VVIIDSIAFHFRHGF  157 (226)
Q Consensus       121 --------------~-~~~---~-----------------------~~l~~l~~~l~~~~~~~--lvVIDsl~~l~~~~~  157 (226)
                                    . .++   +                       .+...+.++.++. +++  +||||+++.+.....
T Consensus       249 ~~i~~~~l~~g~~~l~~~~~~~l~~a~~~l~~~~l~i~d~~~~s~~~i~~~ir~l~~~~-~~~~~lIVID~Lq~~~~~~~  327 (444)
T 3bgw_A          249 GSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKAGQSVNYIWSKTRQTKRKN-PGKRVIVMIDYLQLLEPAKA  327 (444)
T ss_dssp             SCCCHHHHHHTGGGTCCSCHHHHHHHHHHHHTSCEEEECCSSCBHHHHHHHHHHHHHHS-CSSCEEEEEECSTTSBCSCS
T ss_pred             cCCCHHHHhcccCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHh-CCCCeEEEEecHHhccCCCC
Confidence                          0 000   0                       1122233444444 789  999999997653321


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC----CCCcCCcCCCCchhH
Q 036464          158 VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA----ESCLTCLRDSGSRKA  212 (226)
Q Consensus       158 ~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~----~~~~~~~~~sg~~~~  212 (226)
                        ...|.+.+.++++.|+.+|+++|++||+++|+++..+.    .+.+.+++.||++..
T Consensus       328 --~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~krp~lsdlr~Sg~ieq  384 (444)
T 3bgw_A          328 --NDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQ  384 (444)
T ss_dssp             --SSCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCGGGGGSSCCCCCGGGCCSCSHHHH
T ss_pred             --CCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCccccccCCCCCchhhhhhhhhHHh
Confidence              13477889999999999999999999999999876543    366778899998654

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=99.89  E-value=7.3e-23  Score=177.84  Aligned_cols=139  Identities=24%  Similarity=0.265  Sum_probs=101.6

Q ss_pred             ccCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchH-------
Q 036464           52 SLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE-------  123 (226)
Q Consensus        52 ~~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~-------  123 (226)
                      ...+++||++.||.+|+ ||+++|++++|+|+||+|||+||++++.+++      ..+.+|+||++|......       
T Consensus        40 ~~~~i~TG~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~------~~g~~vlyid~E~s~~~~~a~~~g~  113 (356)
T 1u94_A           40 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ------REGKTCAFIDAEHALDPIYARKLGV  113 (356)
T ss_dssp             CCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEESSCCCCHHHHHHTTC
T ss_pred             cCCcccCCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH------HCCCeEEEEeCCCCccHHHHHHcCC
Confidence            46789999999999999 9999999999999999999999999999987      357799999987411100       


Q ss_pred             ------------HHHHHHHHHHHHhhCCCceEEEEcCCchhhh-cCcCC-hH-----HHHHHHHHHHHHHHHHHHHcCCE
Q 036464          124 ------------QSAVINYLDKFVSEHKDVKVVIIDSIAFHFR-HGFVD-LA-----LRTRVLSGIALKLMNLAKKFSLA  184 (226)
Q Consensus       124 ------------~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~-~~~~~-~~-----~r~~~l~~~~~~L~~la~~~~~~  184 (226)
                                  .-.....+..++++. ++++|||||++.++. .+++. ..     .+.+.+.++++.|+.+++++|++
T Consensus       114 ~~~~l~i~~~~~~e~~~~~~~~l~~~~-~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~  192 (356)
T 1u94_A          114 DIDNLLCSQPDTGEQALEICDALARSG-AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL  192 (356)
T ss_dssp             CGGGCEEECCSSHHHHHHHHHHHHHHT-CCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred             ChhheeeeCCCCHHHHHHHHHHHHhcc-CCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCE
Confidence                        011233344444443 799999999998873 22211 00     22346788999999999999999


Q ss_pred             EEEeccccccCCC
Q 036464          185 LLEPNLATTANLA  197 (226)
Q Consensus       185 vi~~nq~~~~~~~  197 (226)
                      ||++||+++.++.
T Consensus       193 VI~~nq~~~~~~~  205 (356)
T 1u94_A          193 LIFINQIRMKIGV  205 (356)
T ss_dssp             EEEEEC-------
T ss_pred             EEEEeccccccCc
Confidence            9999999987654

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=99.88  E-value=1.4e-22  Score=175.64  Aligned_cols=139  Identities=24%  Similarity=0.299  Sum_probs=103.2

Q ss_pred             ccCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchH-------
Q 036464           52 SLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE-------  123 (226)
Q Consensus        52 ~~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~-------  123 (226)
                      ...+++||++.||.+|+ ||+++|++++|+|+||+|||+||++++.+++      ..+++|+||++|......       
T Consensus        38 ~~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~------~~g~~vlyi~~E~~~~~~~a~~lG~  111 (349)
T 2zr9_A           38 PISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ------AAGGIAAFIDAEHALDPEYAKKLGV  111 (349)
T ss_dssp             CCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH------HTTCCEEEEESSCCCCHHHHHHTTC
T ss_pred             cCCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH------hCCCeEEEEECCCCcCHHHHHHcCC
Confidence            46789999999999999 9999999999999999999999999999987      357899999987411100       


Q ss_pred             ------------HHHHHHHHHHHHhhCCCceEEEEcCCchhhh-cCcCC-h--H---HHHHHHHHHHHHHHHHHHHcCCE
Q 036464          124 ------------QSAVINYLDKFVSEHKDVKVVIIDSIAFHFR-HGFVD-L--A---LRTRVLSGIALKLMNLAKKFSLA  184 (226)
Q Consensus       124 ------------~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~-~~~~~-~--~---~r~~~l~~~~~~L~~la~~~~~~  184 (226)
                                  ....+..+..++.+ .++++|||||+++++. .+++. .  .   .+.+.+.++++.|+.+++++|++
T Consensus       112 ~~~~l~i~~~~~~e~~l~~~~~l~~~-~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~t  190 (349)
T 2zr9_A          112 DTDSLLVSQPDTGEQALEIADMLVRS-GALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTT  190 (349)
T ss_dssp             CGGGCEEECCSSHHHHHHHHHHHHTT-TCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred             CHHHeEEecCCCHHHHHHHHHHHHhc-CCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCE
Confidence                        01123334444444 4799999999998873 22211 0  0   23346788899999999999999


Q ss_pred             EEEeccccccCCC
Q 036464          185 LLEPNLATTANLA  197 (226)
Q Consensus       185 vi~~nq~~~~~~~  197 (226)
                      ||++||++++.+.
T Consensus       191 VI~inh~~~~~~~  203 (349)
T 2zr9_A          191 AIFINELREKIGV  203 (349)
T ss_dssp             EEEEEECC-----
T ss_pred             EEEEeccccccCc
Confidence            9999999987654

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=99.88  E-value=6.4e-22  Score=179.19  Aligned_cols=152  Identities=17%  Similarity=0.154  Sum_probs=113.9

Q ss_pred             cccCceec-CchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc----------
Q 036464           51 ESLARITT-SCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG----------  119 (226)
Q Consensus        51 ~~~~~i~T-g~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~----------  119 (226)
                      ....+++| |++.||+++ ||+++|++++|+|+||+|||+|+++++.+++.     ..+.+|+|++.|+.          
T Consensus       219 ~~~~~i~t~G~~~LD~~l-gGl~~G~l~li~G~pG~GKT~lal~~a~~~a~-----~~g~~vl~~s~E~s~~~l~~r~~~  292 (503)
T 1q57_A          219 EESVGLLFSGCTGINDKT-LGARGGEVIMVTSGSGMVMSTFVRQQALQWGT-----AMGKKVGLAMLEESVEETAEDLIG  292 (503)
T ss_dssp             SCTTCSCCSSCTTHHHHH-CCCCTTCEEEEEESSCHHHHHHHHHHHHHHTT-----TSCCCEEEEESSSCHHHHHHHHHH
T ss_pred             cccCCccccchhhhhHhh-cccCCCeEEEEeecCCCCchHHHHHHHHHHHH-----hcCCcEEEEeccCCHHHHHHHHHH
Confidence            45778999 999999999 69999999999999999999999999999983     22789999998841          


Q ss_pred             -----CchH-------------------------------------HHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCc
Q 036464          120 -----FYTE-------------------------------------QSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGF  157 (226)
Q Consensus       120 -----~~~~-------------------------------------~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~  157 (226)
                           ...+                                     ...+...+.++.++. ++++||||+++.+.... 
T Consensus       293 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~i~~~i~~~~~~~-~~~lvVID~l~~l~~~~-  370 (503)
T 1q57_A          293 LHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGL-GCDVIILDHISIVVSAS-  370 (503)
T ss_dssp             HHTTSCCTTCHHHHHHHHHTSHHHHHHHHHHTTTCEEEECCC---CHHHHHHHHHHHHHTT-CCSEEEEECTTCCCSCC-
T ss_pred             HHcCCChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhc-CCCEEEEccchhcCCCC-
Confidence                 0000                                     001122233333343 79999999999764321 


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC--------CCCcCCcCCCCchhH
Q 036464          158 VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA--------ESCLTCLRDSGSRKA  212 (226)
Q Consensus       158 ~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~--------~~~~~~~~~sg~~~~  212 (226)
                       ....+.+.+.++++.|+++|+++|++||+++|+++ .+.        .+.+.+++.||++..
T Consensus       371 -~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r-~~~~~~~~~~~~p~l~dlr~s~~ie~  431 (503)
T 1q57_A          371 -GESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKN-PDKGKAHEEGRPVSITDLRGSGALRQ  431 (503)
T ss_dssp             -SCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCC-CSSSSCSTTCCCCCSSSCSSSSHHHH
T ss_pred             -CCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCc-hhccCccccCCCCChhhhccchHhhe
Confidence             11246778999999999999999999999999998 322        244567777777554

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=99.88  E-value=2.3e-22  Score=180.06  Aligned_cols=153  Identities=18%  Similarity=0.273  Sum_probs=114.7

Q ss_pred             ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC-----------
Q 036464           52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF-----------  120 (226)
Q Consensus        52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~-----------  120 (226)
                      ...+++||++.||+++ ||+++|++++|+|+||+|||+|+++++.+++.     ..+.+|+|++.|+..           
T Consensus       182 ~~~~i~tG~~~LD~~~-gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~-----~~g~~Vl~~s~E~s~~~l~~r~~~~~  255 (454)
T 2r6a_A          182 EITGIPTGFTELDRMT-SGFQRSDLIIVAARPSVGKTAFALNIAQNVAT-----KTNENVAIFSLEMSAQQLVMRMLCAE  255 (454)
T ss_dssp             CCCSBCCSCHHHHHHH-SSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH-----HSSCCEEEEESSSCHHHHHHHHHHHH
T ss_pred             CCCCCCCCcHHHHhhc-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH-----hCCCcEEEEECCCCHHHHHHHHHHHH
Confidence            3578999999999999 89999999999999999999999999999873     135689999987410           


Q ss_pred             -------------chHHH--------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChH
Q 036464          121 -------------YTEQS--------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLA  161 (226)
Q Consensus       121 -------------~~~~~--------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~  161 (226)
                                   ..+..                          .....+.++..+ .++++||||+++.+..... ...
T Consensus       256 ~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~-~~~~livID~l~~~~~~~~-~~~  333 (454)
T 2r6a_A          256 GNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQE-SGLGMIVIDYLQLIQGSGR-SKE  333 (454)
T ss_dssp             HTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTT-TCCCEEEEECGGGSCCSCC----
T ss_pred             cCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHH-cCCCEEEEccHHHhccCCC-CCC
Confidence                         00000                          001122223333 3799999999998764321 123


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCC----CCcCCcCCCCchhH
Q 036464          162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAE----SCLTCLRDSGSRKA  212 (226)
Q Consensus       162 ~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~----~~~~~~~~sg~~~~  212 (226)
                      .+.+.+.++++.|+++|+++|++||+++|+++..+..    +.+.+++.||+...
T Consensus       334 ~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~  388 (454)
T 2r6a_A          334 NRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQ  388 (454)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHh
Confidence            4677889999999999999999999999999877653    55667888888654

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.87  E-value=7.8e-22  Score=158.99  Aligned_cols=147  Identities=26%  Similarity=0.311  Sum_probs=106.7

Q ss_pred             ceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH---------
Q 036464           55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS---------  125 (226)
Q Consensus        55 ~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~---------  125 (226)
                      +++||++.||++++||+++|++++|+|+||+|||+|+.+++.  .       .+++|+|++.+.....+.+         
T Consensus         1 ri~tG~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-------~~~~v~~i~~~~~~~~~~~~~~~~~~~~   71 (220)
T 2cvh_A            1 MLSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-------SGKKVAYVDTEGGFSPERLVQMAETRGL   71 (220)
T ss_dssp             CBCCSCHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-------HCSEEEEEESSCCCCHHHHHHHHHTTTC
T ss_pred             CcccCcHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-------cCCcEEEEECCCCCCHHHHHHHHHhcCC
Confidence            589999999999999999999999999999999999999998  2       3679999998741111110         


Q ss_pred             ---------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCE
Q 036464          126 ---------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLA  184 (226)
Q Consensus       126 ---------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~  184 (226)
                                           ..+..+..++.+  ++++||||+++++++.... ...+.+.+.++++.|++++++++++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~lliiD~~~~~l~~~~~-~~~~~~~~~~~~~~L~~l~~~~~~~  148 (220)
T 2cvh_A           72 NPEEALSRFILFTPSDFKEQRRVIGSLKKTVDS--NFALVVVDSITAHYRAEEN-RSGLIAELSRQLQVLLWIARKHNIP  148 (220)
T ss_dssp             CHHHHHHHEEEECCTTTSHHHHHHHHHHHHCCT--TEEEEEEECCCCCTTGGGG-SSTTHHHHHHHHHHHHHHHHHHTCC
T ss_pred             ChHHHhhcEEEEecCCHHHHHHHHHHHHHHhhc--CCCEEEEcCcHHHhhhcCc-hHHHHHHHHHHHHHHHHHHHHcCCE
Confidence                                 112222223322  5999999999987654321 1124567788999999999999999


Q ss_pred             EEEeccccccCCCCCCcCCcCCCCchhHHHHHh
Q 036464          185 LLEPNLATTANLAESCLTCLRDSGSRKAVAAAA  217 (226)
Q Consensus       185 vi~~nq~~~~~~~~~~~~~~~~sg~~~~~~~~~  217 (226)
                      ||+++|..+..+..    ..+..|+......||
T Consensus       149 vi~~~h~~~~~~~~----~~~p~~~~~~~~~~d  177 (220)
T 2cvh_A          149 VIVINQVHFDSRTE----MTKPVAEQTLGYRCK  177 (220)
T ss_dssp             EEEEECSSSSCTTS----SCCSCCCHHHHHTSS
T ss_pred             EEEEeeEEEcCCCC----ccccCCCcceeecCc
Confidence            99999998765532    344455554444444

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=99.85  E-value=6e-21  Score=192.34  Aligned_cols=156  Identities=23%  Similarity=0.198  Sum_probs=117.6

Q ss_pred             cccCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchH------
Q 036464           51 ESLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE------  123 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~------  123 (226)
                      .+..+++||+++||++++ ||+++|++++|+|+||+|||+||+++|.+++.      .+++|+||++|......      
T Consensus       708 ~~~~~i~TG~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~------~g~~VlyiS~Ees~~ql~A~rlG  781 (2050)
T 3cmu_A          708 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQR------EGKTCAFIDAEHALDPIYARKLG  781 (2050)
T ss_dssp             TSCCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHT------TTCCEEEECTTSCCCHHHHHHTT
T ss_pred             cccceeecCChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHh------cCCcEEEEECCCcHHHHHHHHcC
Confidence            356889999999999998 79999999999999999999999999999983      56789999998411110      


Q ss_pred             -------------HHHHHHHHHHHHhhCCCceEEEEcCCchhhh-cCcC--------ChHHHHHHHHHHHHHHHHHHHHc
Q 036464          124 -------------QSAVINYLDKFVSEHKDVKVVIIDSIAFHFR-HGFV--------DLALRTRVLSGIALKLMNLAKKF  181 (226)
Q Consensus       124 -------------~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~-~~~~--------~~~~r~~~l~~~~~~L~~la~~~  181 (226)
                                   .......++++..+. ++++|||||++.+++ .++.        ++..|  ++.++++.|+++|+++
T Consensus       782 ~~~~~l~i~~~~~i~~i~~~~r~l~~~~-~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~R--eis~ilr~Lk~lAke~  858 (2050)
T 3cmu_A          782 VDIDNLLCSQPDTGEQALEICDALARSG-AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAAR--MMSQAMRKLAGNLKQS  858 (2050)
T ss_dssp             CCTTTCEEECCSSHHHHHHHHHHHHHHT-CCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHH--HHHHHHHHHHHHHHTT
T ss_pred             CCccceEEecCCCHHHHHHHHHHHhhcc-CCCEEEEcchhhhcccccccCCCCchhhHHHHH--HHHHHHHHHHHHHHHh
Confidence                         011233344444444 789999999998876 2211        22233  4889999999999999


Q ss_pred             CCEEEEeccccccCCCCCCcCCcCCCCchhHHHHH
Q 036464          182 SLALLEPNLATTANLAESCLTCLRDSGSRKAVAAA  216 (226)
Q Consensus       182 ~~~vi~~nq~~~~~~~~~~~~~~~~sg~~~~~~~~  216 (226)
                      |++||++||+++.++..... ....+|...+.+.+
T Consensus       859 ~v~VI~l~Qv~r~~e~~fgd-p~~p~GG~~l~h~a  892 (2050)
T 3cmu_A          859 NTLLIFINQIRMKIGVMFGN-PETTTGGNALKFYA  892 (2050)
T ss_dssp             TCEEEEEECCEECTTCCSSC-CEECSSHHHHHHHE
T ss_pred             CCEEEEeccccccchhhcCC-CccccCCceeeeee
Confidence            99999999999998864322 35556665555444

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=99.84  E-value=1.9e-20  Score=153.29  Aligned_cols=127  Identities=25%  Similarity=0.325  Sum_probs=97.5

Q ss_pred             CceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------C
Q 036464           54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-------------F  120 (226)
Q Consensus        54 ~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-------------~  120 (226)
                      .+++||++.||++|+||+++|++++|+|+||+|||+|+++++...+      ..+++|+|++.|..             .
T Consensus         3 ~~i~tG~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~------~~~~~v~~~~~e~~~~~~~~~~~~~g~~   76 (247)
T 2dr3_A            3 RRVKTGIPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGL------KMGEPGIYVALEEHPVQVRQNMAQFGWD   76 (247)
T ss_dssp             CEECCCCTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHH------HTTCCEEEEESSSCHHHHHHHHHTTTCC
T ss_pred             ccccCCchhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHH------hcCCeEEEEEccCCHHHHHHHHHHcCCC
Confidence            5799999999999999999999999999999999999999999887      35789999997730             0


Q ss_pred             c---------------------------------hHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHH
Q 036464          121 Y---------------------------------TEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVL  167 (226)
Q Consensus       121 ~---------------------------------~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l  167 (226)
                      .                                 .+.......+.+.+++. ++++||||+++.+...   +..    ..
T Consensus        77 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~vviD~~~~l~~~---~~~----~~  148 (247)
T 2dr3_A           77 VKPYEEKGMFAMVDAFTAGIGKSKEYEKYIVHDLTDIREFIEVLRQAIRDI-NAKRVVVDSVTTLYIN---KPA----MA  148 (247)
T ss_dssp             CHHHHHHTSEEEEECSTTTTCC--CCCSCBCSCCSSHHHHHHHHHHHHHHH-TCCEEEEETSGGGTTT---CGG----GH
T ss_pred             HHHHhhCCcEEEEecchhhcccccccccccccCccCHHHHHHHHHHHHHHh-CCCEEEECCchHhhcC---CHH----HH
Confidence            0                                 00112244555555554 6899999999987632   211    23


Q ss_pred             HHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          168 SGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       168 ~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      .+++..|.++++++|++||+++|.++.
T Consensus       149 ~~~l~~l~~~~~~~~~~vi~~~h~~~~  175 (247)
T 2dr3_A          149 RSIILQLKRVLAGTGCTSIFVSQVSVG  175 (247)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEEECC--
T ss_pred             HHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            356778888999999999999999874

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=99.84  E-value=1.5e-20  Score=189.49  Aligned_cols=148  Identities=22%  Similarity=0.228  Sum_probs=107.0

Q ss_pred             HHHHHHhhcccCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc
Q 036464           43 WDMLQEEQESLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY  121 (226)
Q Consensus        43 ~~l~~~~~~~~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~  121 (226)
                      ++|+++......+++||++.||.+|+ ||+|+|++++|+|+||+|||+||+|++.+.+      ..+.+|+||++|....
T Consensus         2 ~~l~~~~~~~~~~i~TGi~~LD~lLg~GGip~G~vtlI~G~pGsGKT~lalq~a~~~~------~~Ge~vlYI~tEes~~   75 (2050)
T 3cmu_A            2 AHMGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ------REGKTCAFIDAEHALD   75 (2050)
T ss_dssp             ----------CCEECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH------TTTCCEEEECTTSCCC
T ss_pred             cchhhhhccCCCeeccCcHHHHHHHhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHhh------ccCCceEEEEccCcch
Confidence            35566655667899999999999998 9999999999999999999999999999988      4678999999873100


Q ss_pred             ------------------hHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCc-------CChHHHHHHHHHHHHHHHH
Q 036464          122 ------------------TEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGF-------VDLALRTRVLSGIALKLMN  176 (226)
Q Consensus       122 ------------------~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~-------~~~~~r~~~l~~~~~~L~~  176 (226)
                                        +...+.+..+...+.+..++++|||||++++++...       .....+.+.+..++..|++
T Consensus        76 ~~ra~~lG~dl~~i~v~~p~~~e~ll~il~~L~~~~~~~lVVIDSISaL~~~~e~~~e~~d~~~~~raR~l~~~l~~L~~  155 (2050)
T 3cmu_A           76 PIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG  155 (2050)
T ss_dssp             HHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCSSSCCTTHHHHHHHHHHHHHHH
T ss_pred             hhHHhhhccCcccceecCCCcHHHHHHHHHHHHhccCCcEEEEcChHHhhhhcccccccccchhhHHHHHHHHHHHHHHH
Confidence                              000111122222333334799999999999886421       1223455678899999999


Q ss_pred             HHHHcCCEEEEeccccccCC
Q 036464          177 LAKKFSLALLEPNLATTANL  196 (226)
Q Consensus       177 la~~~~~~vi~~nq~~~~~~  196 (226)
                      +++++|++||+|||++...+
T Consensus       156 ~ak~~gitVVlTNQv~~~~g  175 (2050)
T 3cmu_A          156 NLKQSNTLLIFINQIRMKIG  175 (2050)
T ss_dssp             HHHTTTCEEEEEECCEECTT
T ss_pred             HHHHhCCeEEEEEecccccc
Confidence            99999999999999987654

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=99.83  E-value=2.6e-20  Score=186.00  Aligned_cols=159  Identities=23%  Similarity=0.226  Sum_probs=117.6

Q ss_pred             cccCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCch-------
Q 036464           51 ESLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYT-------  122 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~-------  122 (226)
                      ....+++||++.||.+|+ ||+++|++++|+|+||+|||+||+|++.+++      ..+++|+||++|.....       
T Consensus       359 ~~~~~isTGi~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~------~~G~~vlyis~E~s~~~~~a~~lG  432 (1706)
T 3cmw_A          359 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ------REGKTCAFIDAEHALDPIYARKLG  432 (1706)
T ss_dssp             GSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEECTTSCCCHHHHHHTT
T ss_pred             ccCceeccCcHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH------HhCCCeEEEEccCchHHHHHHHcC
Confidence            357899999999999999 9999999999999999999999999999998      36789999998851100       


Q ss_pred             ------------HHHHHHHHHHHHHhhCCCceEEEEcCCchhhh-cCcC----C--hHHHHHHHHHHHHHHHHHHHHcCC
Q 036464          123 ------------EQSAVINYLDKFVSEHKDVKVVIIDSIAFHFR-HGFV----D--LALRTRVLSGIALKLMNLAKKFSL  183 (226)
Q Consensus       123 ------------~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~-~~~~----~--~~~r~~~l~~~~~~L~~la~~~~~  183 (226)
                                  ..-..+..+..++++. ++++|||||+++++. .+.+    +  ...+.+.+.++++.|+.+++++|+
T Consensus       433 vd~~~L~i~~~~~~e~~l~~l~~lv~~~-~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v  511 (1706)
T 3cmw_A          433 VDIDNLLCSQPDTGEQALEICDALARSG-AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNT  511 (1706)
T ss_dssp             CCGGGCEEECCSSHHHHHHHHHHHHHHT-CCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCHHHeEEcCCCCHHHHHHHHHHHHHhc-CCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCC
Confidence                        0011234455555554 899999999998873 2111    1  113556788999999999999999


Q ss_pred             EEEEeccccccCCCCCCcCCcCCCCchhHHHHHh
Q 036464          184 ALLEPNLATTANLAESCLTCLRDSGSRKAVAAAA  217 (226)
Q Consensus       184 ~vi~~nq~~~~~~~~~~~~~~~~sg~~~~~~~~~  217 (226)
                      +||++||+++.++.... +..+..|+......+|
T Consensus       512 ~VI~inQl~~~vg~~fg-~~~~p~gg~ale~~AD  544 (1706)
T 3cmw_A          512 LLIFINQIRMKIGVMFG-NPETTTGGNALKFYAS  544 (1706)
T ss_dssp             EEEEEECEEECTTCCSS-CCEEESSCSHHHHHEE
T ss_pred             EEEEEeecccccccccC-CCccCCCCcceeeeCC
Confidence            99999999998765321 2233444444444444

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=99.81  E-value=5.6e-20  Score=183.62  Aligned_cols=158  Identities=23%  Similarity=0.228  Sum_probs=117.6

Q ss_pred             ccCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCch--------
Q 036464           52 SLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYT--------  122 (226)
Q Consensus        52 ~~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~--------  122 (226)
                      ...+++||+++||++|+ ||+++|++++|+|+||+|||+|+++++.+++      ..+++|+||+.|.....        
T Consensus       709 ~~~~i~TG~~eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa------~~g~~VlyiS~Ees~~ql~A~~lGv  782 (1706)
T 3cmw_A          709 DVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ------REGKTCAFIDAEHALDPIYARKLGV  782 (1706)
T ss_dssp             SCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEECTTSCCCHHHHHHTTC
T ss_pred             cccccccCcHHHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHH------HcCCCeEEEeccchHHHHHHHHcCC
Confidence            46899999999999999 9999999999999999999999999999987      35779999998841100        


Q ss_pred             -----------HHHHHHHHHHHHHhhCCCceEEEEcCCchhhh-cCc----CC--hHHHHHHHHHHHHHHHHHHHHcCCE
Q 036464          123 -----------EQSAVINYLDKFVSEHKDVKVVIIDSIAFHFR-HGF----VD--LALRTRVLSGIALKLMNLAKKFSLA  184 (226)
Q Consensus       123 -----------~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~-~~~----~~--~~~r~~~l~~~~~~L~~la~~~~~~  184 (226)
                                 .....+..+++++.+. ++++|||||++.+.. .+.    .+  ...+.+.+.++++.|+.+++++|++
T Consensus       783 d~~~L~i~~~~~leei~~~l~~lv~~~-~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~  861 (1706)
T 3cmw_A          783 DIDNLLCSQPDTGEQALEICDALARSG-AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTL  861 (1706)
T ss_dssp             CGGGCEEECCSSHHHHHHHHHHHHHHT-CCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCE
T ss_pred             ChhheEEecCCcHHHHHHHHHHHHHcc-CCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCE
Confidence                       0012334455555554 799999999998772 211    11  1124456888899999999999999


Q ss_pred             EEEeccccccCCCCCCcCCcCCCCchhHHHHHh
Q 036464          185 LLEPNLATTANLAESCLTCLRDSGSRKAVAAAA  217 (226)
Q Consensus       185 vi~~nq~~~~~~~~~~~~~~~~sg~~~~~~~~~  217 (226)
                      ||++||+++.++.....+ .+..|+.....++|
T Consensus       862 VIlinql~r~~g~~~Gdp-~~p~gs~~Leq~AD  893 (1706)
T 3cmw_A          862 LIFINQIRMKIGVMFGNP-ETTTGGNALKFYAS  893 (1706)
T ss_dssp             EEEEECEEECTTCCSSCC-EEESSCSHHHHHEE
T ss_pred             EEEEecCCCccccccCCc-cccCCcchhhheee
Confidence            999999998876543322 23445555555555

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.78  E-value=1.7e-18  Score=140.17  Aligned_cols=126  Identities=19%  Similarity=0.290  Sum_probs=93.5

Q ss_pred             CceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------------C
Q 036464           54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-------------F  120 (226)
Q Consensus        54 ~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-------------~  120 (226)
                      .+++||++.||.++.||+++|+++.|.|+||+|||||+.+++....      ..+++|+|++.+..             .
T Consensus         3 ~~i~tg~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~------~~~~~v~~~~~~~~~~~~~~~~~~~~~~   76 (235)
T 2w0m_A            3 SRLSTGILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL------RDGDPCIYVTTEESRDSIIRQAKQFNWD   76 (235)
T ss_dssp             CEECCSCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH------HHTCCEEEEESSSCHHHHHHHHHHTTCC
T ss_pred             ccccCCchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH------HCCCeEEEEEcccCHHHHHHHHHHhcch
Confidence            5799999999999999999999999999999999999999998776      24678999986530             0


Q ss_pred             ch--------------------------HHHHHHHHHHHHHhhCCCce--EEEEcCCchhhhcCcCChHHHHHHHHHHHH
Q 036464          121 YT--------------------------EQSAVINYLDKFVSEHKDVK--VVIIDSIAFHFRHGFVDLALRTRVLSGIAL  172 (226)
Q Consensus       121 ~~--------------------------~~~~~l~~l~~~l~~~~~~~--lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~  172 (226)
                      ..                          ..-.....+.+.+... +++  +||||++++++..+.       ....+++.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~llilDe~~~~~~~d~-------~~~~~~~~  148 (235)
T 2w0m_A           77 FEEYIEKKLIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKL-GYGKARLVIDSVSALFLDKP-------AMARKISY  148 (235)
T ss_dssp             CGGGBTTTEEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHH-CSSCEEEEEETGGGGSSSCG-------GGHHHHHH
T ss_pred             HHHHhhCCEEEEeccccccCceeeecCCCHHHHHHHHHHHHHhh-CCCceEEEEECchHhhcCCH-------HHHHHHHH
Confidence            00                          0011223344444443 688  999999998764321       12357888


Q ss_pred             HHHHHHHHcCCEEEEeccccc
Q 036464          173 KLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       173 ~L~~la~~~~~~vi~~nq~~~  193 (226)
                      .|+++++++|++||+++|..+
T Consensus       149 ~l~~~~~~~~~~vi~~~h~~~  169 (235)
T 2w0m_A          149 YLKRVLNKWNFTIYATSQYAI  169 (235)
T ss_dssp             HHHHHHHHTTEEEEEEEC---
T ss_pred             HHHHHHHhCCCeEEEEeccCc
Confidence            999999999999999999984

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.77  E-value=4e-18  Score=144.03  Aligned_cols=162  Identities=17%  Similarity=0.172  Sum_probs=101.6

Q ss_pred             HHHHHHh--hcccCceec-CchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc
Q 036464           43 WDMLQEE--QESLARITT-SCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG  119 (226)
Q Consensus        43 ~~l~~~~--~~~~~~i~T-g~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~  119 (226)
                      +|.++++  ......++| |++.||.+. +|+++|+++.|+|+||+|||||+.+++.....     ..+.+|+|++.|..
T Consensus         2 ~~~l~~~~~~~~~~~i~t~g~~~Ld~i~-~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~-----~~G~~v~~~~~e~~   75 (296)
T 1cr0_A            2 RERIREHLSSEESVGLLFSGCTGINDKT-LGARGGEVIMVTSGSGMGKSTFVRQQALQWGT-----AMGKKVGLAMLEES   75 (296)
T ss_dssp             HHHHHHHHHHCCCCCBCCCSCTTHHHHH-CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHH-----TSCCCEEEEESSSC
T ss_pred             hhHhhhhhccCCcCCcccCCHHHHHHHh-cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHH-----HcCCeEEEEeCcCC
Confidence            3555543  256788999 999999999 89999999999999999999999999998862     23558999997630


Q ss_pred             -------------C--ch------------HHH-----HH----------------HHHHHHHH---hhCCCceEEEEcC
Q 036464          120 -------------F--YT------------EQS-----AV----------------INYLDKFV---SEHKDVKVVIIDS  148 (226)
Q Consensus       120 -------------~--~~------------~~~-----~~----------------l~~l~~~l---~~~~~~~lvVIDs  148 (226)
                                   .  ..            +..     ..                ...+.+.+   ....++++||||+
T Consensus        76 ~~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~a~~~~~~p~llilDe  155 (296)
T 1cr0_A           76 VEETAEDLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRSGLGCDVIILDH  155 (296)
T ss_dssp             HHHHHHHHHHHHTTCCGGGCHHHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             HHHHHHHHHHHHcCCChhhccccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence                         0  00            000     00                01111111   1234799999999


Q ss_pred             CchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc-c------CCCCCCcCCcCCCCchhH
Q 036464          149 IAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT-A------NLAESCLTCLRDSGSRKA  212 (226)
Q Consensus       149 l~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~-~------~~~~~~~~~~~~sg~~~~  212 (226)
                      ++.+....  ....+...+.++++.|+++++++|++||+++|..+ .      .+..+.+.+++.||.+..
T Consensus       156 pt~~~~~~--~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~  224 (296)
T 1cr0_A          156 ISIVVSAS--GESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQ  224 (296)
T ss_dssp             EC-------------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHH
T ss_pred             ccccCCCC--CCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHh
Confidence            99865331  11123356678999999999999999999999974 1      234466667777776543

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.72  E-value=1.9e-17  Score=138.88  Aligned_cols=132  Identities=14%  Similarity=0.146  Sum_probs=93.6

Q ss_pred             CceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC----CCCeEEEEeccccCchHHH----
Q 036464           54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG----LGGKAIYIGKCLGFYTEQS----  125 (226)
Q Consensus        54 ~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~----~~~~vlyi~~e~~~~~~~~----  125 (226)
                      ..++||++.||.++ ||+++|++++|+|+||+|||||+++++..+..+..+.+    .+++|+|++.|.  ..+++    
T Consensus        11 ~~i~tg~~~ld~~l-ggl~~G~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~--~~~~~~~r~   87 (279)
T 1nlf_A           11 EAFAAAPPPLDYVL-PNMVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED--PPTAIHHRL   87 (279)
T ss_dssp             HHHHSCCCCCCEEE-TTEETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS--CHHHHHHHH
T ss_pred             HHhcCCCCChheeE-CCccCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCC--CHHHHHHHH
Confidence            56899999999999 59999999999999999999999999987652111110    146899999773  11111    


Q ss_pred             ----------------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHH
Q 036464          126 ----------------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIA  171 (226)
Q Consensus       126 ----------------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~  171 (226)
                                                        ..+..+..++   .++++|||||+++++..+..    ....+.+++
T Consensus        88 ~~~g~~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i~~l~---~~~~livlDe~~~~~~~d~~----~~~~~~~~~  160 (279)
T 1nlf_A           88 HALGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAA---EGRRLMVLDTLRRFHIEEEN----ASGPMAQVI  160 (279)
T ss_dssp             HHHHTTSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHHHHH---TTCSEEEEECGGGGCCSCTT----CHHHHHHHH
T ss_pred             HHHHhhcChhhhhhccCceEEeecCCCCcccCCHHHHHHHHHhc---CCCCEEEECCHHHhcCCCcC----chHHHHHHH
Confidence                                              0012222222   25899999999986543221    224567888


Q ss_pred             HHHHHHHHHcCCEEEEeccccccC
Q 036464          172 LKLMNLAKKFSLALLEPNLATTAN  195 (226)
Q Consensus       172 ~~L~~la~~~~~~vi~~nq~~~~~  195 (226)
                      +.|++++++.|++||+++|..+..
T Consensus       161 ~~L~~l~~~~g~tvi~i~H~~~~~  184 (279)
T 1nlf_A          161 GRMEAIAADTGCSIVFLHHASKGA  184 (279)
T ss_dssp             HHHHHHHHHHCCEEEEEEEC----
T ss_pred             HHHHHHHHHcCCEEEEEecCCCcc
Confidence            999999999999999999998754

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=99.67  E-value=4.1e-17  Score=138.94  Aligned_cols=123  Identities=15%  Similarity=0.084  Sum_probs=90.4

Q ss_pred             CceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc------ccCchHHHHH
Q 036464           54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC------LGFYTEQSAV  127 (226)
Q Consensus        54 ~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e------~~~~~~~~~~  127 (226)
                      ..++||++.||+++ ||+++|.+++|+||||+|||+|+++++.. .        +.+|+|++.+      .+. .+....
T Consensus       104 ~~i~TGi~~LD~lL-GGi~~gsviLI~GpPGsGKTtLAlqlA~~-~--------G~~VlyIs~~~eE~v~~~~-~~le~~  172 (331)
T 2vhj_A          104 GELVGCSPVVAEFG-GHRYASGMVIVTGKGNSGKTPLVHALGEA-L--------GGKDKYATVRFGEPLSGYN-TDFNVF  172 (331)
T ss_dssp             TTCCSBCCEEEEET-TEEEESEEEEEECSCSSSHHHHHHHHHHH-H--------HTTSCCEEEEBSCSSTTCB-CCHHHH
T ss_pred             hccccCcHHHHHHh-CCCCCCcEEEEEcCCCCCHHHHHHHHHHh-C--------CCCEEEEEecchhhhhhhh-cCHHHH
Confidence            34779999999999 99999999999999999999999999876 2        4578999982      111 122234


Q ss_pred             HHHHHHHHhhCCCceEEEEcCCchhhhcCcC--ChHHHHHHHHHHHHHHHHHHHHcCCEEEEecc
Q 036464          128 INYLDKFVSEHKDVKVVIIDSIAFHFRHGFV--DLALRTRVLSGIALKLMNLAKKFSLALLEPNL  190 (226)
Q Consensus       128 l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~--~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq  190 (226)
                      +..+.+.+.+. +  +|||||++++......  ......+.+++++..|.+++++.|++++++++
T Consensus       173 l~~i~~~l~~~-~--LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttn  234 (331)
T 2vhj_A          173 VDDIARAMLQH-R--VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN  234 (331)
T ss_dssp             HHHHHHHHHHC-S--EEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred             HHHHHHHHhhC-C--EEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeC
Confidence            55566666654 3  9999999987543211  01111356788999999999999999998766

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.51  E-value=2.2e-13  Score=123.88  Aligned_cols=127  Identities=20%  Similarity=0.212  Sum_probs=88.7

Q ss_pred             ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHH-----
Q 036464           52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSA-----  126 (226)
Q Consensus        52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~-----  126 (226)
                      ...+++||++.||++|+||+++|+++.|.|+||+|||||+.+++....      ..+.+++|++.+.  ...++.     
T Consensus       259 ~~~~l~~g~~~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~------~~G~~vi~~~~ee--~~~~l~~~~~~  330 (525)
T 1tf7_A          259 SNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENAC------ANKERAILFAYEE--SRAQLLRNAYS  330 (525)
T ss_dssp             CCCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHH------TTTCCEEEEESSS--CHHHHHHHHHT
T ss_pred             ccceeecChHHHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH------hCCCCEEEEEEeC--CHHHHHHHHHH
Confidence            456899999999999999999999999999999999999999998765      2466799998762  111110     


Q ss_pred             ----------------------------HHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHH
Q 036464          127 ----------------------------VINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLA  178 (226)
Q Consensus       127 ----------------------------~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la  178 (226)
                                                  ....+...+. ..+++++|+|+++.+.. ...   .+  +..+.+..|.+.+
T Consensus       331 ~g~~~~~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l-~~~p~llilDp~~~Ld~-~~~---~~--~~~~~i~~ll~~l  403 (525)
T 1tf7_A          331 WGMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEIN-DFKPARIAIDSLSALAR-GVS---NN--AFRQFVIGVTGYA  403 (525)
T ss_dssp             TSCCHHHHHHTTSEEECCCCGGGSCHHHHHHHHHHHHH-TTCCSEEEEECHHHHTS-SSC---HH--HHHHHHHHHHHHH
T ss_pred             cCCCHHHHHhCCCEEEEEeccccCCHHHHHHHHHHHHH-hhCCCEEEEcChHHHHh-hCC---hH--HHHHHHHHHHHHH
Confidence                                        0111111111 23799999996665543 221   11  1334445555555


Q ss_pred             HHcCCEEEEeccccc
Q 036464          179 KKFSLALLEPNLATT  193 (226)
Q Consensus       179 ~~~~~~vi~~nq~~~  193 (226)
                      ++.|++||+++|...
T Consensus       404 ~~~g~tvilvsh~~~  418 (525)
T 1tf7_A          404 KQEEITGLFTNTSDQ  418 (525)
T ss_dssp             HHTTCEEEEEEECSS
T ss_pred             HhCCCEEEEEECccc
Confidence            678999999999874

>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}

Probab=99.49  E-value=3.5e-13  Score=111.83  Aligned_cols=57  Identities=5%  Similarity=-0.111  Sum_probs=53.6

Q ss_pred             ceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        55 ~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      .++||++.||++|+||+++|++++|.|.||+|||+|++|++.+.+      ..+++++|++.+
T Consensus         2 ~i~tGi~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~------~~Ge~~~~~~~~   58 (260)
T 3bs4_A            2 SLSWEIEELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKL------KSDNLVGMFSIS   58 (260)
T ss_dssp             CBCCSSHHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHH------HTTCEEEEEECS
T ss_pred             cCccCcHHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHH------HCCCcEEEEEEe
Confidence            589999999999999999999999999999999999999999887      579999999966

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.37  E-value=2.7e-12  Score=116.68  Aligned_cols=134  Identities=18%  Similarity=0.229  Sum_probs=89.1

Q ss_pred             cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-----------
Q 036464           51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-----------  119 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-----------  119 (226)
                      +...+++||++.||.+..||+++|+++.|.|+||+|||||+.+++...+.+     .+.+++|++.+..           
T Consensus        16 ~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-----~~~g~i~v~g~~~~~~~~~~~~~~   90 (525)
T 1tf7_A           16 QAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-----FDEPGVFVTFEETPQDIIKNARSF   90 (525)
T ss_dssp             SSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSSCHHHHHHHHGGG
T ss_pred             cccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCCEEEEEEeCCHHHHHHHHHHc
Confidence            346889999999999998899999999999999999999999975444432     2456889986520           


Q ss_pred             --Cch-----------------------HHH---HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHH
Q 036464          120 --FYT-----------------------EQS---AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIA  171 (226)
Q Consensus       120 --~~~-----------------------~~~---~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~  171 (226)
                        .+.                       +.+   ...+.+...++. .++++|+||+++++... .......   ...+.
T Consensus        91 g~~~q~~~~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~-g~~~~lilDe~t~~~~~-~~lD~~~---~~~l~  165 (525)
T 1tf7_A           91 GWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQK-YRARRVSIDSVTSVFQQ-YDASSVV---RRELF  165 (525)
T ss_dssp             TCCHHHHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHH-HTCSEEEEECSTTTSTT-TCCHHHH---HHHHH
T ss_pred             CCChHHhhccCcEEEEecCcccchhhhhcccCHHHHHHHHHHHHHH-cCCCEEEECCHHHHHHh-cCCHHHH---HHHHH
Confidence              000                       001   112233333433 26899999999976543 1111112   22444


Q ss_pred             HHHHHHHHHcCCEEEEeccccccC
Q 036464          172 LKLMNLAKKFSLALLEPNLATTAN  195 (226)
Q Consensus       172 ~~L~~la~~~~~~vi~~nq~~~~~  195 (226)
                      ..++++.+ .|++||+++|.....
T Consensus       166 ~ll~~l~~-~g~tvl~itH~~~~~  188 (525)
T 1tf7_A          166 RLVARLKQ-IGATTVMTTERIEEY  188 (525)
T ss_dssp             HHHHHHHH-HTCEEEEEEECSSSS
T ss_pred             HHHHHHHH-CCCEEEEEecCCCCc
Confidence            55555544 699999999987653

>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1

Probab=99.10  E-value=8.8e-12  Score=90.43  Aligned_cols=66  Identities=29%  Similarity=0.456  Sum_probs=32.6

Q ss_pred             CCCCC---CCCHHHHHHHHhCCCccHHHHHhCChhHHhh----------------------chHhHHHHHHHhhcccCce
Q 036464            2 EVSKL---PISATQRGKLISAGYTSLSSICSASSSDISR----------------------GTQTAWDMLQEEQESLARI   56 (226)
Q Consensus         2 ~~~~l---~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----------------------~~~~a~~l~~~~~~~~~~i   56 (226)
                      ||++|   ++++.+++||+++||+|+++|+.+++.+|.+                      +|.||.++++++ +...+|
T Consensus        24 ~I~~L~~~GIg~~~i~kL~eAG~~Tve~va~a~~~eL~~i~GIse~ka~kIi~aA~kl~~~gF~ta~e~~~~r-~~~~~i  102 (114)
T 1b22_A           24 PISRLEQCGINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEAAKLVPMGFTTATEFHQRR-SEIIQI  102 (114)
T ss_dssp             CHHHHHHTTCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHHHHHSCCC------------------
T ss_pred             cHHHHHhcCCCHHHHHHHHHcCcCcHHHHHhCCHHHHHHccCCCHHHHHHHHHHHHHHcccCCCcHHHHHHHh-cCCCee
Confidence            44455   4999999999999999999999999999987                      578999999887 788999


Q ss_pred             ecCchhHHHhhC
Q 036464           57 TTSCADLDNILG   68 (226)
Q Consensus        57 ~Tg~~~LD~~l~   68 (226)
                      +||++.||.+|+
T Consensus       103 tTGs~~lD~lLg  114 (114)
T 1b22_A          103 TTGSKELDKLLQ  114 (114)
T ss_dssp             ------------
T ss_pred             ccCcHHHHhhhC
Confidence            999999999984

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=98.92  E-value=3.8e-09  Score=85.66  Aligned_cols=101  Identities=17%  Similarity=0.083  Sum_probs=67.9

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC-chHHH-------------HHHHHHHHHHhh
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF-YTEQS-------------AVINYLDKFVSE  137 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~-~~~~~-------------~~l~~l~~~l~~  137 (226)
                      .+|.++.++|++|+||||++++++.++.      ..+.+|+|+..+... ...++             .....+.+.+.+
T Consensus        10 ~~G~i~litG~mGsGKTT~ll~~~~r~~------~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~   83 (223)
T 2b8t_A           10 KIGWIEFITGPMFAGKTAELIRRLHRLE------YADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMS   83 (223)
T ss_dssp             -CCEEEEEECSTTSCHHHHHHHHHHHHH------HTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHS
T ss_pred             CCcEEEEEECCCCCcHHHHHHHHHHHHH------hcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHH
Confidence            5689999999999999999999999987      567899998533200 00000             011223333332


Q ss_pred             ---CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          138 ---HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       138 ---~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                         ..++++|||||++.+.     .         .++..++.+++ .++.||++.+.+.
T Consensus        84 ~~~~~~~dvViIDEaQ~l~-----~---------~~ve~l~~L~~-~gi~Vil~Gl~~d  127 (223)
T 2b8t_A           84 NSFNDETKVIGIDEVQFFD-----D---------RICEVANILAE-NGFVVIISGLDKN  127 (223)
T ss_dssp             TTSCTTCCEEEECSGGGSC-----T---------HHHHHHHHHHH-TTCEEEEECCSBC
T ss_pred             HhhCCCCCEEEEecCccCc-----H---------HHHHHHHHHHh-CCCeEEEEecccc
Confidence               2368999999998532     1         23455666666 4999999999774

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.88  E-value=1.8e-08  Score=88.26  Aligned_cols=117  Identities=18%  Similarity=0.148  Sum_probs=78.3

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---cCchHHHHHHHHHHHHHhhCCCceEEEE
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---GFYTEQSAVINYLDKFVSEHKDVKVVII  146 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---~~~~~~~~~l~~l~~~l~~~~~~~lvVI  146 (226)
                      |+++-.=++++||||+|||.+|..+|...-         .+.++++...   ....+....+..+-....+. .+.+|+|
T Consensus       178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~---------~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~-aP~IIFi  247 (405)
T 4b4t_J          178 GIAQPKGVILYGPPGTGKTLLARAVAHHTD---------CKFIRVSGAELVQKYIGEGSRMVRELFVMAREH-APSIIFM  247 (405)
T ss_dssp             TCCCCCCEEEESCSSSSHHHHHHHHHHHHT---------CEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHT-CSEEEEE
T ss_pred             CCCCCCceEEeCCCCCCHHHHHHHHHHhhC---------CCceEEEhHHhhccccchHHHHHHHHHHHHHHh-CCceEee
Confidence            465555599999999999999999998874         3577777542   11233334555665555554 7899999


Q ss_pred             cCCchhhhcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464          147 DSIAFHFRHGFV----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL  196 (226)
Q Consensus       147 Dsl~~l~~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~  196 (226)
                      |++.++......    ......+.+.+++..|..+....++.||.+.+.-...+
T Consensus       248 DEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LD  301 (405)
T 4b4t_J          248 DEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILD  301 (405)
T ss_dssp             ESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSC
T ss_pred             ecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCC
Confidence            999988754322    12234456777777777776677777775554444444

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.87  E-value=6e-09  Score=81.05  Aligned_cols=107  Identities=11%  Similarity=0.066  Sum_probs=61.9

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHH-HH--HHHHHHhhCCCceEEEEc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV-IN--YLDKFVSEHKDVKVVIID  147 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~-l~--~l~~~l~~~~~~~lvVID  147 (226)
                      +++|..+.|+||||+|||+|+..++.....     ..+..++|++..  ...+.+.. ..  .....+....+++++|||
T Consensus        35 ~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~-----~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~llilD  107 (180)
T 3ec2_A           35 PEEGKGLTFVGSPGVGKTHLAVATLKAIYE-----KKGIRGYFFDTK--DLIFRLKHLMDEGKDTKFLKTVLNSPVLVLD  107 (180)
T ss_dssp             GGGCCEEEECCSSSSSHHHHHHHHHHHHHH-----HSCCCCCEEEHH--HHHHHHHHHHHHTCCSHHHHHHHTCSEEEEE
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHHHHHH-----HcCCeEEEEEHH--HHHHHHHHHhcCchHHHHHHHhcCCCEEEEe
Confidence            456899999999999999999999888741     245678888743  11111100 00  001222222367999999


Q ss_pred             CCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          148 SIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       148 sl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      ++...-.    +.. ....+   ...+... .+.+.++|+++|..-
T Consensus       108 E~~~~~~----~~~-~~~~l---~~ll~~~-~~~~~~ii~tsn~~~  144 (180)
T 3ec2_A          108 DLGSERL----SDW-QRELI---SYIITYR-YNNLKSTIITTNYSL  144 (180)
T ss_dssp             TCSSSCC----CHH-HHHHH---HHHHHHH-HHTTCEEEEECCCCS
T ss_pred             CCCCCcC----CHH-HHHHH---HHHHHHH-HHcCCCEEEEcCCCh
Confidence            9974211    111 11222   2223332 346777777776654

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.86  E-value=2.8e-08  Score=88.03  Aligned_cols=119  Identities=15%  Similarity=0.125  Sum_probs=77.5

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---cCchHHHHHHHHHHHHHhhCCCceEEEE
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---GFYTEQSAVINYLDKFVSEHKDVKVVII  146 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---~~~~~~~~~l~~l~~~l~~~~~~~lvVI  146 (226)
                      |+++-.=++++||||+|||.++..+|...-         .+.+.++...   ....+....+..+....... .+.+|+|
T Consensus       211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~---------~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~-aP~Iifi  280 (434)
T 4b4t_M          211 GIRAPKGALMYGPPGTGKTLLARACAAQTN---------ATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEK-APTIIFI  280 (434)
T ss_dssp             CCCCCCEEEEESCTTSSHHHHHHHHHHHHT---------CEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHH-CSEEEEE
T ss_pred             CCCCCCeeEEECcCCCCHHHHHHHHHHHhC---------CCEEEEehhhhhhcccchHHHHHHHHHHHHHhc-CCeEEee
Confidence            676667799999999999999999998874         3567777542   11223334455555555554 6899999


Q ss_pred             cCCchhhhcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCC
Q 036464          147 DSIAFHFRHGFV----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAE  198 (226)
Q Consensus       147 Dsl~~l~~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~  198 (226)
                      |++.++......    ........+..++..|..+....++.||.+.+.-..++..
T Consensus       281 DEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~A  336 (434)
T 4b4t_M          281 DELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPA  336 (434)
T ss_dssp             ECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTT
T ss_pred             cchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHh
Confidence            999988755332    1123344556666666666556677887555444445543

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=98.85  E-value=1.9e-08  Score=82.12  Aligned_cols=45  Identities=9%  Similarity=0.075  Sum_probs=34.4

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +|+++++|++++.++.     ..    ...++..|++++++.|.+||++.|-..
T Consensus       163 ~p~llllDEPts~LD~-----~~----~~~i~~~l~~l~~~~g~tvi~vtHd~~  207 (235)
T 3tif_A          163 NPPIILADQPTWALDS-----KT----GEKIMQLLKKLNEEDGKTVVVVTHDIN  207 (235)
T ss_dssp             CCSEEEEESTTTTSCH-----HH----HHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred             CCCEEEEeCCcccCCH-----HH----HHHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence            7999999999986633     12    236677788888888999999888654

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=98.84  E-value=2.5e-08  Score=86.86  Aligned_cols=44  Identities=16%  Similarity=0.278  Sum_probs=34.1

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      +|+++++|++++-++.     ..+    .++...|+++.++.|+++|++.|-.
T Consensus       151 ~P~lLLLDEPts~LD~-----~~~----~~l~~~l~~l~~~~g~tii~vTHd~  194 (381)
T 3rlf_A          151 EPSVFLLDEPLSNLDA-----ALR----VQMRIEISRLHKRLGRTMIYVTHDQ  194 (381)
T ss_dssp             CCSEEEEESTTTTSCH-----HHH----HHHHHHHHHHHHHHCCEEEEECSCH
T ss_pred             CCCEEEEECCCcCCCH-----HHH----HHHHHHHHHHHHhCCCEEEEEECCH
Confidence            6899999999976633     222    2566788888888999999998865

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.84  E-value=2.3e-08  Score=83.21  Aligned_cols=45  Identities=11%  Similarity=-0.040  Sum_probs=34.0

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++-++.     ..    ...+++.|++++++.+++||++.|-..
T Consensus       165 ~p~lLllDEPts~LD~-----~~----~~~i~~~l~~l~~~~~~tvi~vtHdl~  209 (266)
T 4g1u_C          165 TPRWLFLDEPTSALDL-----YH----QQHTLRLLRQLTRQEPLAVCCVLHDLN  209 (266)
T ss_dssp             CCEEEEECCCCSSCCH-----HH----HHHHHHHHHHHHHHSSEEEEEECSCHH
T ss_pred             CCCEEEEeCccccCCH-----HH----HHHHHHHHHHHHHcCCCEEEEEEcCHH
Confidence            6899999999976633     12    236677888888888889998888653

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.83  E-value=4.3e-08  Score=86.85  Aligned_cols=119  Identities=16%  Similarity=0.167  Sum_probs=76.7

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---cCchHHHHHHHHHHHHHhhCCCceEEEE
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---GFYTEQSAVINYLDKFVSEHKDVKVVII  146 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---~~~~~~~~~l~~l~~~l~~~~~~~lvVI  146 (226)
                      |+++-.=++|+||||+|||.++..+|...-         .+.++++...   ....+....+..+....... .+.+|+|
T Consensus       211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~---------~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~-~P~Iifi  280 (437)
T 4b4t_L          211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIG---------ANFIFSPASGIVDKYIGESARIIREMFAYAKEH-EPCIIFM  280 (437)
T ss_dssp             CCCCCCEEEEESCTTSSHHHHHHHHHHHHT---------CEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHS-CSEEEEE
T ss_pred             CCCCCCeEEEECCCCCcHHHHHHHHHHHhC---------CCEEEEehhhhccccchHHHHHHHHHHHHHHhc-CCceeee
Confidence            566666799999999999999999998874         3577777542   11223334455555555554 7899999


Q ss_pred             cCCchhhhcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCC
Q 036464          147 DSIAFHFRHGFV----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAE  198 (226)
Q Consensus       147 Dsl~~l~~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~  198 (226)
                      |++.++......    ........+..++..+..+....++.||.+.+.-..++..
T Consensus       281 DEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpA  336 (437)
T 4b4t_L          281 DEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPA  336 (437)
T ss_dssp             ECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTT
T ss_pred             ecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHH
Confidence            999988754322    1223344566666666665555666676544433445443

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.82  E-value=3.6e-08  Score=87.16  Aligned_cols=117  Identities=15%  Similarity=0.170  Sum_probs=78.3

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---cCchHHHHHHHHHHHHHhhCCCceEEEE
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---GFYTEQSAVINYLDKFVSEHKDVKVVII  146 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---~~~~~~~~~l~~l~~~l~~~~~~~lvVI  146 (226)
                      |+++..=++++||||+|||+++..+|...-         .+.+.++...   ....+....+..+-....+. .+.+++|
T Consensus       202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~---------~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~-aP~Iifi  271 (428)
T 4b4t_K          202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTK---------AAFIRVNGSEFVHKYLGEGPRMVRDVFRLAREN-APSIIFI  271 (428)
T ss_dssp             CCCCCCEEEEESCTTTTHHHHHHHHHHHHT---------CEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHT-CSEEEEE
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHHhC---------CCeEEEecchhhccccchhHHHHHHHHHHHHHc-CCCeeec
Confidence            566666699999999999999999998864         4577777542   11223334455555555554 7899999


Q ss_pred             cCCchhhhcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464          147 DSIAFHFRHGFV----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL  196 (226)
Q Consensus       147 Dsl~~l~~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~  196 (226)
                      |++.++......    ......+.+.+++..+..+....++.||.+.+.-..++
T Consensus       272 DEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD  325 (428)
T 4b4t_K          272 DEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADTLD  325 (428)
T ss_dssp             ECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSSCC
T ss_pred             hhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhcC
Confidence            999988754321    12234456777888888777777777775554444444

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=98.81  E-value=2.6e-08  Score=86.35  Aligned_cols=45  Identities=18%  Similarity=0.218  Sum_probs=35.2

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +|+++++|++++.++.     ..    ...++..|+++.++.|+|||++.|-..
T Consensus       181 ~P~lLLlDEPTs~LD~-----~~----~~~i~~lL~~l~~~~g~Tii~vTHdl~  225 (366)
T 3tui_C          181 NPKVLLCDQATSALDP-----AT----TRSILELLKDINRRLGLTILLITHEMD  225 (366)
T ss_dssp             CCSEEEEESTTTTSCH-----HH----HHHHHHHHHHHHHHSCCEEEEEESCHH
T ss_pred             CCCEEEEECCCccCCH-----HH----HHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence            7999999999986643     12    236777888888899999999888653

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.80  E-value=2.6e-08  Score=83.22  Aligned_cols=48  Identities=17%  Similarity=0.176  Sum_probs=34.0

Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN  195 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~  195 (226)
                      .+|+++++|++++-++.     ..+    ..+++.|++++++.|.|||++.|-....
T Consensus       160 ~~P~lLlLDEPts~LD~-----~~~----~~i~~~l~~l~~~~g~tvi~vtHdl~~~  207 (275)
T 3gfo_A          160 MEPKVLILDEPTAGLDP-----MGV----SEIMKLLVEMQKELGITIIIATHDIDIV  207 (275)
T ss_dssp             TCCSEEEEECTTTTCCH-----HHH----HHHHHHHHHHHHHHCCEEEEEESCCSSG
T ss_pred             cCCCEEEEECccccCCH-----HHH----HHHHHHHHHHHhhCCCEEEEEecCHHHH
Confidence            37999999999976633     122    2566777777744599999888876543

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.79  E-value=5.3e-08  Score=85.78  Aligned_cols=119  Identities=16%  Similarity=0.128  Sum_probs=78.0

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---cCchHHHHHHHHHHHHHhhCCCceEEEE
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---GFYTEQSAVINYLDKFVSEHKDVKVVII  146 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---~~~~~~~~~l~~l~~~l~~~~~~~lvVI  146 (226)
                      |+++-.=++|+||||+|||.+|..+|...-         ...+.++...   ....+....+..+-....+. .+.+|+|
T Consensus       212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~---------~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~-aP~IIfi  281 (437)
T 4b4t_I          212 GIKPPKGVILYGAPGTGKTLLAKAVANQTS---------ATFLRIVGSELIQKYLGDGPRLCRQIFKVAGEN-APSIVFI  281 (437)
T ss_dssp             TCCCCSEEEEESSTTTTHHHHHHHHHHHHT---------CEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHT-CSEEEEE
T ss_pred             CCCCCCCCceECCCCchHHHHHHHHHHHhC---------CCEEEEEHHHhhhccCchHHHHHHHHHHHHHhc-CCcEEEE
Confidence            566666699999999999999999999874         3566676432   11223334455555555554 7899999


Q ss_pred             cCCchhhhcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCC
Q 036464          147 DSIAFHFRHGFV----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAE  198 (226)
Q Consensus       147 Dsl~~l~~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~  198 (226)
                      |++.++......    ......+.+..++..+..+....++.||.+.+.-..++..
T Consensus       282 DEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpA  337 (437)
T 4b4t_I          282 DEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPA  337 (437)
T ss_dssp             EEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTT
T ss_pred             ehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHH
Confidence            999988764322    1123344566677777666556677777555544455544

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=98.78  E-value=8.5e-08  Score=79.63  Aligned_cols=117  Identities=16%  Similarity=0.123  Sum_probs=70.0

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc--Cc-hHHHHHHHHHHHHHhhCCCceEEEE
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--FY-TEQSAVINYLDKFVSEHKDVKVVII  146 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--~~-~~~~~~l~~l~~~l~~~~~~~lvVI  146 (226)
                      |+.++.-+.|+||||+|||+++..++...         +.++++++....  .+ .+....+..+....... .+.+|+|
T Consensus        47 ~~~~~~~~ll~G~~GtGKT~la~~la~~~---------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vl~i  116 (285)
T 3h4m_A           47 GIEPPKGILLYGPPGTGKTLLAKAVATET---------NATFIRVVGSELVKKFIGEGASLVKDIFKLAKEK-APSIIFI  116 (285)
T ss_dssp             CCCCCSEEEEESSSSSSHHHHHHHHHHHT---------TCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHHHT-CSEEEEE
T ss_pred             CCCCCCeEEEECCCCCcHHHHHHHHHHHh---------CCCEEEEehHHHHHhccchHHHHHHHHHHHHHHc-CCeEEEE
Confidence            46777779999999999999999998775         346777775421  11 11222333444444443 6789999


Q ss_pred             cCCchhhhcCcCC----hHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464          147 DSIAFHFRHGFVD----LALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL  196 (226)
Q Consensus       147 Dsl~~l~~~~~~~----~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~  196 (226)
                      |++..+.......    ....+..+..++..+..+....++.||.+.+.....+
T Consensus       117 DEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~  170 (285)
T 3h4m_A          117 DEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILD  170 (285)
T ss_dssp             ETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBC
T ss_pred             ECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcC
Confidence            9999876432211    1223334444444443333345677777776554443

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=98.76  E-value=6.6e-08  Score=83.64  Aligned_cols=45  Identities=11%  Similarity=0.117  Sum_probs=33.6

Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      .+|+++++|++++-++.     ..|.    ++...|+++.++.|+|+|++.|-.
T Consensus       155 ~~P~lLLLDEPts~LD~-----~~r~----~l~~~l~~~~~~~g~tvi~vTHd~  199 (359)
T 3fvq_A          155 PDPELILLDEPFSALDE-----QLRR----QIREDMIAALRANGKSAVFVSHDR  199 (359)
T ss_dssp             TCCSEEEEESTTTTSCH-----HHHH----HHHHHHHHHHHHTTCEEEEECCCH
T ss_pred             cCCCEEEEeCCcccCCH-----HHHH----HHHHHHHHHHHhCCCEEEEEeCCH
Confidence            37999999999976633     2222    455567788888999999999864

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.72  E-value=7.8e-08  Score=83.11  Aligned_cols=46  Identities=7%  Similarity=0.068  Sum_probs=34.4

Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      .+|+++++|++++-++.     ..|    .++...|+++.++.+.++|++.|-..
T Consensus       162 ~~P~lLLLDEP~s~LD~-----~~r----~~l~~~l~~l~~~~g~tvi~vTHd~~  207 (355)
T 1z47_A          162 PRPQVLLFDEPFAAIDT-----QIR----RELRTFVRQVHDEMGVTSVFVTHDQE  207 (355)
T ss_dssp             TCCSEEEEESTTCCSSH-----HHH----HHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred             cCCCEEEEeCCcccCCH-----HHH----HHHHHHHHHHHHhcCCEEEEECCCHH
Confidence            37999999999976532     222    25666778888888999999988643

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.72  E-value=9e-08  Score=82.86  Aligned_cols=46  Identities=15%  Similarity=0.213  Sum_probs=34.1

Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      .+++++++|++++-++.     ..|.    ++...|+++.++.|.++|++.|-..
T Consensus       150 ~~P~lLLLDEP~s~LD~-----~~r~----~l~~~l~~l~~~~g~tvi~vTHd~~  195 (359)
T 2yyz_A          150 KQPKVLLFDEPLSNLDA-----NLRM----IMRAEIKHLQQELGITSVYVTHDQA  195 (359)
T ss_dssp             TCCSEEEEESTTTTSCH-----HHHH----HHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred             cCCCEEEEECCcccCCH-----HHHH----HHHHHHHHHHHhcCCEEEEEcCCHH
Confidence            37999999999976633     2232    5666778888888999998888643

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.72  E-value=1.4e-08  Score=78.63  Aligned_cols=23  Identities=22%  Similarity=0.286  Sum_probs=21.5

Q ss_pred             CCCCeeEEEecCCCCChHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQ   93 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~   93 (226)
                      +++|+++.|.||||+|||||+..
T Consensus         6 i~~gei~~l~G~nGsGKSTl~~~   28 (171)
T 4gp7_A            6 IPELSLVVLIGSSGSGKSTFAKK   28 (171)
T ss_dssp             EESSEEEEEECCTTSCHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHH
Confidence            67899999999999999999984

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.72  E-value=6.9e-08  Score=78.21  Aligned_cols=45  Identities=4%  Similarity=0.046  Sum_probs=32.7

Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      .+++++++|++++.++.     ..+    ..+.+.|++++++ |.+||++.|-..
T Consensus       157 ~~p~lllLDEPt~~LD~-----~~~----~~~~~~l~~l~~~-g~tvi~vtHd~~  201 (224)
T 2pcj_A          157 NEPILLFADEPTGNLDS-----ANT----KRVMDIFLKINEG-GTSIVMVTHERE  201 (224)
T ss_dssp             TCCSEEEEESTTTTCCH-----HHH----HHHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred             cCCCEEEEeCCCCCCCH-----HHH----HHHHHHHHHHHHC-CCEEEEEcCCHH
Confidence            37999999999976633     122    2556677777766 899999988654

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.71  E-value=9.9e-08  Score=82.69  Aligned_cols=45  Identities=18%  Similarity=0.259  Sum_probs=34.0

Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      .+|+++++|++++-++.     ..|    .++...|+++.++.|.++|++.|-.
T Consensus       150 ~~P~lLLLDEP~s~LD~-----~~r----~~l~~~l~~l~~~~g~tvi~vTHd~  194 (362)
T 2it1_A          150 KEPEVLLLDEPLSNLDA-----LLR----LEVRAELKRLQKELGITTVYVTHDQ  194 (362)
T ss_dssp             TCCSEEEEESGGGGSCH-----HHH----HHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred             cCCCEEEEECccccCCH-----HHH----HHHHHHHHHHHHhCCCEEEEECCCH
Confidence            37999999999986633     222    2566777888888899999888864

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.71  E-value=1.2e-07  Score=84.20  Aligned_cols=117  Identities=15%  Similarity=0.098  Sum_probs=73.9

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---cCchHHHHHHHHHHHHHhhCCCceEEEE
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---GFYTEQSAVINYLDKFVSEHKDVKVVII  146 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---~~~~~~~~~l~~l~~~l~~~~~~~lvVI  146 (226)
                      |+++-.=++|+||||+|||.++..+|...-         ...+.++...   ....+....+..+....... .+.+|+|
T Consensus       239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~~---------~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~-aP~IIfi  308 (467)
T 4b4t_H          239 GIDPPKGILLYGPPGTGKTLCARAVANRTD---------ATFIRVIGSELVQKYVGEGARMVRELFEMARTK-KACIIFF  308 (467)
T ss_dssp             TCCCCSEEEECSCTTSSHHHHHHHHHHHHT---------CEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHT-CSEEEEE
T ss_pred             CCCCCCceEeeCCCCCcHHHHHHHHHhccC---------CCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhc-CCceEee
Confidence            566666699999999999999999998874         3567776432   11223334455555555554 7899999


Q ss_pred             cCCchhhhcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464          147 DSIAFHFRHGFV----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL  196 (226)
Q Consensus       147 Dsl~~l~~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~  196 (226)
                      |++.++......    ........+..++..+..+....++.||.+.+.-..++
T Consensus       309 DEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LD  362 (467)
T 4b4t_H          309 DEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLD  362 (467)
T ss_dssp             ECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBC
T ss_pred             cccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCC
Confidence            999988754322    11223344555666665555556676665544333333

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.69  E-value=6.1e-08  Score=73.57  Aligned_cols=60  Identities=18%  Similarity=0.178  Sum_probs=45.9

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCch
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAF  151 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~  151 (226)
                      +|+.+.|+||+|+|||+|+..++....      ..+.+++|++.......          .++   .+++++|||+++.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~------~~g~~~~~~~~~~~~~~----------~~~---~~~~lLilDE~~~   94 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQAL------EAGKNAAYIDAASMPLT----------DAA---FEAEYLAVDQVEK   94 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHH------TTTCCEEEEETTTSCCC----------GGG---GGCSEEEEESTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH------hcCCcEEEEcHHHhhHH----------HHH---hCCCEEEEeCccc
Confidence            799999999999999999999988775      23567999986522111          122   2579999999986

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.68  E-value=1.3e-07  Score=78.26  Aligned_cols=28  Identities=25%  Similarity=0.207  Sum_probs=24.9

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.||+|+|||||+..++.-.
T Consensus        38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           38 IEEGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999999998776543

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=98.66  E-value=2e-07  Score=79.42  Aligned_cols=114  Identities=15%  Similarity=0.152  Sum_probs=65.8

Q ss_pred             hCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc--C-chHHHHHHHHHHHHHhhCCCceE
Q 036464           67 LGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--F-YTEQSAVINYLDKFVSEHKDVKV  143 (226)
Q Consensus        67 l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--~-~~~~~~~l~~l~~~l~~~~~~~l  143 (226)
                      +.|+..+..-++|+||||+|||+++..++....        +.++++++....  . ..+....+..+....... ++.+
T Consensus        38 ~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--------~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~~-~~~v  108 (322)
T 1xwi_A           38 FTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--------NSTFFSISSSDLVSKWLGESEKLVKNLFQLAREN-KPSI  108 (322)
T ss_dssp             SCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--------SCEEEEEECCSSCCSSCCSCHHHHHHHHHHHHHT-SSEE
T ss_pred             HhCCCCCCceEEEECCCCccHHHHHHHHHHHcC--------CCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHhc-CCcE
Confidence            335566777899999999999999999998762        346777775421  0 111112334444444443 6899


Q ss_pred             EEEcCCchhhhcCcCC-hHHHHHHHHHHHHHHHHHHH-HcCCEEEEec
Q 036464          144 VIIDSIAFHFRHGFVD-LALRTRVLSGIALKLMNLAK-KFSLALLEPN  189 (226)
Q Consensus       144 vVIDsl~~l~~~~~~~-~~~r~~~l~~~~~~L~~la~-~~~~~vi~~n  189 (226)
                      |+||++..+....... .......+.+++..+..+.. ..++.||.+.
T Consensus       109 l~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~at  156 (322)
T 1xwi_A          109 IFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGAT  156 (322)
T ss_dssp             EEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEE
T ss_pred             EEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEec
Confidence            9999999876432221 11122233444444443321 3455666444

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.66  E-value=1e-07  Score=82.90  Aligned_cols=44  Identities=14%  Similarity=0.255  Sum_probs=33.5

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      +++++++|++++-++.     ..|.    ++...|+++.++.|.++|++.|-.
T Consensus       159 ~P~lLLLDEP~s~LD~-----~~r~----~l~~~l~~l~~~~g~tvi~vTHd~  202 (372)
T 1v43_A          159 EPDVLLMDEPLSNLDA-----KLRV----AMRAEIKKLQQKLKVTTIYVTHDQ  202 (372)
T ss_dssp             CCSEEEEESTTTTSCH-----HHHH----HHHHHHHHHHHHHTCEEEEEESCH
T ss_pred             CCCEEEEcCCCccCCH-----HHHH----HHHHHHHHHHHhCCCEEEEEeCCH
Confidence            7999999999976633     2232    566677888888899999888864

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.65  E-value=1.9e-07  Score=77.43  Aligned_cols=45  Identities=9%  Similarity=0.163  Sum_probs=32.7

Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      .+++++++|++++-++.     ..+    ..+.+.|++++++ +.+||++.|-..
T Consensus       176 ~~p~lllLDEPts~LD~-----~~~----~~~~~~l~~l~~~-g~tvi~vtHd~~  220 (263)
T 2olj_A          176 MEPKIMLFDEPTSALDP-----EMV----GEVLSVMKQLANE-GMTMVVVTHEMG  220 (263)
T ss_dssp             TCCSEEEEESTTTTSCH-----HHH----HHHHHHHHHHHHT-TCEEEEECSCHH
T ss_pred             CCCCEEEEeCCcccCCH-----HHH----HHHHHHHHHHHhC-CCEEEEEcCCHH
Confidence            37999999999986633     222    2566677777666 999999988643

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.63  E-value=1.4e-07  Score=81.37  Aligned_cols=45  Identities=18%  Similarity=0.153  Sum_probs=34.1

Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      .+++++++|++++-++.     ..|    .++...|+++.++.|+++|++.|-.
T Consensus       144 ~~P~lLLLDEP~s~LD~-----~~~----~~l~~~l~~l~~~~g~tii~vTHd~  188 (348)
T 3d31_A          144 TNPKILLLDEPLSALDP-----RTQ----ENAREMLSVLHKKNKLTVLHITHDQ  188 (348)
T ss_dssp             SCCSEEEEESSSTTSCH-----HHH----HHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cCCCEEEEECccccCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            37999999999976633     222    2566778888888899999988864

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.62  E-value=1.3e-07  Score=78.19  Aligned_cols=46  Identities=15%  Similarity=0.174  Sum_probs=33.1

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN  195 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~  195 (226)
                      +++++++|++++.++.     ..+    ..+.+.|++++++ |.+||++.|-....
T Consensus       171 ~p~lllLDEPts~LD~-----~~~----~~l~~~l~~l~~~-g~tvi~vtHd~~~~  216 (257)
T 1g6h_A          171 NPKMIVMDEPIAGVAP-----GLA----HDIFNHVLELKAK-GITFLIIEHRLDIV  216 (257)
T ss_dssp             CCSEEEEESTTTTCCH-----HHH----HHHHHHHHHHHHT-TCEEEEECSCCSTT
T ss_pred             CCCEEEEeCCccCCCH-----HHH----HHHHHHHHHHHHC-CCEEEEEecCHHHH
Confidence            7899999999986633     222    2566677777665 99999998875433

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.62  E-value=1.4e-07  Score=75.73  Aligned_cols=96  Identities=14%  Similarity=0.097  Sum_probs=59.5

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCchh
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFH  152 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l  152 (226)
                      .+..+.|+||||+|||+++..++....      ..+.+++|++...  ..+.      +.+.+....++.+||||++..+
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~------~~~~~~~~~~~~~--~~~~------~~~~~~~~~~~~vliiDe~~~~  116 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARAN------ELERRSFYIPLGI--HASI------STALLEGLEQFDLICIDDVDAV  116 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEEGGG--GGGS------CGGGGTTGGGSSEEEEETGGGG
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH------HcCCeEEEEEHHH--HHHH------HHHHHHhccCCCEEEEeccccc
Confidence            567899999999999999999998875      3467899998652  1111      1111222235789999999865


Q ss_pred             hhcCcCChHHHHHHHHHHHHHHHHHHHHcCC-EEEEecc
Q 036464          153 FRHGFVDLALRTRVLSGIALKLMNLAKKFSL-ALLEPNL  190 (226)
Q Consensus       153 ~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~-~vi~~nq  190 (226)
                      ...     ..   ....+...+......... .|+.+|.
T Consensus       117 ~~~-----~~---~~~~l~~~l~~~~~~~~~~ii~~~~~  147 (242)
T 3bos_A          117 AGH-----PL---WEEAIFDLYNRVAEQKRGSLIVSASA  147 (242)
T ss_dssp             TTC-----HH---HHHHHHHHHHHHHHHCSCEEEEEESS
T ss_pred             cCC-----HH---HHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            321     11   122344455555555555 4555543

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.61  E-value=2.6e-07  Score=75.65  Aligned_cols=28  Identities=18%  Similarity=0.124  Sum_probs=25.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.||+|+|||||+..++...
T Consensus        25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           25 AQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999999998877543

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=98.60  E-value=1.7e-07  Score=76.74  Aligned_cols=45  Identities=9%  Similarity=0.147  Sum_probs=32.8

Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      .+++++++|++++.++.     ..+    ..+.+.|++++++.|.+||++.|-.
T Consensus       143 ~~p~lllLDEPts~LD~-----~~~----~~~~~~l~~l~~~~g~tvi~vtHd~  187 (240)
T 2onk_A          143 IQPRLLLLDEPLSAVDL-----KTK----GVLMEELRFVQREFDVPILHVTHDL  187 (240)
T ss_dssp             TCCSSBEEESTTSSCCH-----HHH----HHHHHHHHHHHHHHTCCEEEEESCH
T ss_pred             cCCCEEEEeCCcccCCH-----HHH----HHHHHHHHHHHHhcCCEEEEEeCCH
Confidence            37999999999976633     222    2566677788777788888888864

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=98.60  E-value=1.5e-07  Score=73.94  Aligned_cols=100  Identities=19%  Similarity=0.175  Sum_probs=63.0

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC-c-----hHHHH------HHHHHHHHHhhC-C
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF-Y-----TEQSA------VINYLDKFVSEH-K  139 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~-~-----~~~~~------~l~~l~~~l~~~-~  139 (226)
                      +|.++.++|++|+||||++++++.+..      ..+.+|+++....-. +     .....      ......++++.. .
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~------~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~   75 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIYK------LGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIEE   75 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHH------HTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCCT
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHHH------HCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhcC
Confidence            478999999999999999999998876      356788887533100 0     00000      001112222222 2


Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      ++++|+||+++.+ ..             .+...|+.++++ ++.|+++...+.
T Consensus        76 ~~dvviIDE~Q~~-~~-------------~~~~~l~~l~~~-~~~Vi~~Gl~~~  114 (184)
T 2orw_A           76 DTRGVFIDEVQFF-NP-------------SLFEVVKDLLDR-GIDVFCAGLDLT  114 (184)
T ss_dssp             TEEEEEECCGGGS-CT-------------THHHHHHHHHHT-TCEEEEEEESBC
T ss_pred             CCCEEEEECcccC-CH-------------HHHHHHHHHHHC-CCCEEEEeeccc
Confidence            5899999999953 11             234566667766 999999877543

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.59  E-value=8.6e-08  Score=82.82  Aligned_cols=45  Identities=13%  Similarity=0.228  Sum_probs=34.2

Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      .+++++++|++++.++..     .|.    ++...|+++.++.|+++|++.|-.
T Consensus       157 ~~P~lLLLDEP~s~LD~~-----~r~----~l~~~l~~l~~~~g~tvi~vTHd~  201 (353)
T 1oxx_K          157 KDPSLLLLDEPFSNLDAR-----MRD----SARALVKEVQSRLGVTLLVVSHDP  201 (353)
T ss_dssp             TCCSEEEEESTTTTSCGG-----GHH----HHHHHHHHHHHHHCCEEEEEESCH
T ss_pred             hCCCEEEEECCcccCCHH-----HHH----HHHHHHHHHHHhcCCEEEEEeCCH
Confidence            379999999999876442     122    566678888888899999888864

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=98.59  E-value=3.8e-07  Score=74.50  Aligned_cols=75  Identities=23%  Similarity=0.131  Sum_probs=44.6

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc--Cc-hHHHHHHHHHHHHHhhCCCceEEEE
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--FY-TEQSAVINYLDKFVSEHKDVKVVII  146 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--~~-~~~~~~l~~l~~~l~~~~~~~lvVI  146 (226)
                      |++...-+.|+||||+|||+++..++....         .++++++....  .+ .+....+..+-+..... .+.+|+|
T Consensus        35 g~~~~~~vll~G~~GtGKT~la~~la~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-~~~vl~i  104 (262)
T 2qz4_A           35 GAKVPKGALLLGPPGCGKTLLAKAVATEAQ---------VPFLAMAGAEFVEVIGGLGAARVRSLFKEARAR-APCIVYI  104 (262)
T ss_dssp             -CCCCCEEEEESCTTSSHHHHHHHHHHHHT---------CCEEEEETTTTSSSSTTHHHHHHHHHHHHHHHT-CSEEEEE
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHHhC---------CCEEEechHHHHhhccChhHHHHHHHHHHHHhc-CCeEEEE
Confidence            455566689999999999999999988753         35777775421  11 11112222332233333 5799999


Q ss_pred             cCCchhhh
Q 036464          147 DSIAFHFR  154 (226)
Q Consensus       147 Dsl~~l~~  154 (226)
                      |++..+..
T Consensus       105 Deid~l~~  112 (262)
T 2qz4_A          105 DEIDAVGK  112 (262)
T ss_dssp             ECC-----
T ss_pred             eCcchhhc
Confidence            99998754

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.58  E-value=3.6e-07  Score=79.49  Aligned_cols=44  Identities=14%  Similarity=0.230  Sum_probs=33.3

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      +++++++|++++-++.     ..|.    ++...|+++.++.+.++|++.|-.
T Consensus       157 ~P~lLLLDEP~s~LD~-----~~r~----~l~~~l~~l~~~~g~tvi~vTHd~  200 (372)
T 1g29_1          157 KPQVFLMDEPLSNLDA-----KLRV----RMRAELKKLQRQLGVTTIYVTHDQ  200 (372)
T ss_dssp             CCSEEEEECTTTTSCH-----HHHH----HHHHHHHHHHHHHTCEEEEEESCH
T ss_pred             CCCEEEECCCCccCCH-----HHHH----HHHHHHHHHHHhcCCEEEEECCCH
Confidence            7899999999976633     2232    566677888888899999888864

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.58  E-value=4.9e-07  Score=74.52  Aligned_cols=110  Identities=12%  Similarity=0.075  Sum_probs=66.0

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC--CCCeEEEEeccc-------------c-C--c-------hHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG--LGGKAIYIGKCL-------------G-F--Y-------TEQS  125 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~--~~~~vlyi~~e~-------------~-~--~-------~~~~  125 (226)
                      +++|+++.|.||+|+|||||+..++...  +++.|.  ....+-|+..+.             + .  .       ....
T Consensus        28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~I~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~  105 (253)
T 2nq2_C           28 LNKGDILAVLGQNGCGKSTLLDLLLGIH--RPIQGKIEVYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD  105 (253)
T ss_dssp             EETTCEEEEECCSSSSHHHHHHHHTTSS--CCSEEEEEECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHH
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEEeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHH
Confidence            7899999999999999999998776543  222111  123455654321             0 0  0       0000


Q ss_pred             HHHHHHHHHHhh----------------------------CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHH
Q 036464          126 AVINYLDKFVSE----------------------------HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNL  177 (226)
Q Consensus       126 ~~l~~l~~~l~~----------------------------~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~l  177 (226)
                        ...+.++++.                            ..+++++++|++++.++.     ..+    ..+.+.|+++
T Consensus       106 --~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~-----~~~----~~l~~~l~~l  174 (253)
T 2nq2_C          106 --YQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDL-----ANQ----DIVLSLLIDL  174 (253)
T ss_dssp             --HHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCH-----HHH----HHHHHHHHHH
T ss_pred             --HHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH-----HHH----HHHHHHHHHH
Confidence              0111111110                            127899999999986633     222    2566677777


Q ss_pred             HHHcCCEEEEeccccc
Q 036464          178 AKKFSLALLEPNLATT  193 (226)
Q Consensus       178 a~~~~~~vi~~nq~~~  193 (226)
                      +++.+.+||++.|-..
T Consensus       175 ~~~~g~tvi~vtHd~~  190 (253)
T 2nq2_C          175 AQSQNMTVVFTTHQPN  190 (253)
T ss_dssp             HHTSCCEEEEEESCHH
T ss_pred             HHhcCCEEEEEecCHH
Confidence            7777899998888643

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.58  E-value=2.5e-07  Score=77.05  Aligned_cols=46  Identities=11%  Similarity=0.074  Sum_probs=33.4

Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      .+++++++|++++-++.     ..+    ..++..|++++++.+.+||++.|-..
T Consensus       173 ~~p~lllLDEPts~LD~-----~~~----~~i~~~l~~~~~~~g~tviivtHd~~  218 (271)
T 2ixe_A          173 RKPRLLILDNATSALDA-----GNQ----LRVQRLLYESPEWASRTVLLITQQLS  218 (271)
T ss_dssp             TCCSEEEEESTTTTCCH-----HHH----HHHHHHHHHCTTTTTSEEEEECSCHH
T ss_pred             cCCCEEEEECCccCCCH-----HHH----HHHHHHHHHHHhhcCCEEEEEeCCHH
Confidence            37999999999976633     222    25666777776667899999888654

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.57  E-value=3.5e-07  Score=74.81  Aligned_cols=27  Identities=22%  Similarity=0.204  Sum_probs=24.4

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      +++|+++.|.||+|+|||||+..++.-
T Consensus        29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           29 VPRGQIVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999999877654

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.57  E-value=3.3e-07  Score=75.42  Aligned_cols=28  Identities=25%  Similarity=0.334  Sum_probs=24.8

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.||+|+|||||+..++...
T Consensus        23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           23 VRAGEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            7899999999999999999998776543

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.57  E-value=1.1e-07  Score=80.67  Aligned_cols=28  Identities=18%  Similarity=0.093  Sum_probs=24.8

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|+||+|+|||||+.-++.-+
T Consensus        77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           77 VMPGQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             ECTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence            7899999999999999999997766544

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=98.56  E-value=4.8e-07  Score=69.48  Aligned_cols=112  Identities=18%  Similarity=0.136  Sum_probs=62.5

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhcccc-ccCCCCCeEEEEeccc----cCchHH-HHHHHHHHHHHhhCCCceEEEEc
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPV-EFGGLGGKAIYIGKCL----GFYTEQ-SAVINYLDKFVSEHKDVKVVIID  147 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~-~~~~~~~~vlyi~~e~----~~~~~~-~~~l~~l~~~l~~~~~~~lvVID  147 (226)
                      ...+.|+||||+|||+++..++....... .....+..+++++...    ...... ...+..+...+....++.++|||
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iD  122 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFID  122 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEET
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEe
Confidence            45679999999999999999998864100 0001356788876431    011111 11233333333344467899999


Q ss_pred             CCchhhhcCc-CChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464          148 SIAFHFRHGF-VDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA  191 (226)
Q Consensus       148 sl~~l~~~~~-~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~  191 (226)
                      ++..+..... .+.      ...+.+.|+.+..+.++.+|++...
T Consensus       123 e~~~l~~~~~~~~~------~~~~~~~l~~~~~~~~~~ii~~~~~  161 (187)
T 2p65_A          123 EIHTVVGAGAVAEG------ALDAGNILKPMLARGELRCIGATTV  161 (187)
T ss_dssp             TGGGGSSSSSSCTT------SCCTHHHHHHHHHTTCSCEEEEECH
T ss_pred             CHHHhccccccccc------chHHHHHHHHHHhcCCeeEEEecCH
Confidence            9997652211 000      0123344555556677777766543

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=98.55  E-value=3.8e-07  Score=77.49  Aligned_cols=114  Identities=13%  Similarity=0.155  Sum_probs=64.8

Q ss_pred             CCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---cCchHHHHHHHHHHHHHhhCCCceEE
Q 036464           68 GGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---GFYTEQSAVINYLDKFVSEHKDVKVV  144 (226)
Q Consensus        68 ~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---~~~~~~~~~l~~l~~~l~~~~~~~lv  144 (226)
                      .++..+..-++|+||||+|||+++..++...         +.++++++...   ....+....+..+....... ++.+|
T Consensus        45 ~~~~~~~~~vLl~GppGtGKT~la~aia~~~---------~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~-~~~vl  114 (322)
T 3eie_A           45 KGNRKPTSGILLYGPPGTGKSYLAKAVATEA---------NSTFFSVSSSDLVSKWMGESEKLVKQLFAMAREN-KPSII  114 (322)
T ss_dssp             CTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---------TCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHHHT-SSEEE
T ss_pred             hcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---------CCCEEEEchHHHhhcccchHHHHHHHHHHHHHhc-CCeEE
Confidence            3455566779999999999999999998875         34677777431   11112222344444444444 67999


Q ss_pred             EEcCCchhhhcCcCC-hHHHHHHHHHHHHHHHHHH-HHcCCEEEEeccc
Q 036464          145 IIDSIAFHFRHGFVD-LALRTRVLSGIALKLMNLA-KKFSLALLEPNLA  191 (226)
Q Consensus       145 VIDsl~~l~~~~~~~-~~~r~~~l~~~~~~L~~la-~~~~~~vi~~nq~  191 (226)
                      +||++..+....... ..........++..+..+. ...++.||.+.+.
T Consensus       115 ~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~  163 (322)
T 3eie_A          115 FIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI  163 (322)
T ss_dssp             EEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESC
T ss_pred             EechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCC
Confidence            999999876432110 0001122334444444443 2345666644433

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=98.55  E-value=4.8e-07  Score=74.30  Aligned_cols=28  Identities=32%  Similarity=0.270  Sum_probs=24.9

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.||+|+|||||+..++.-.
T Consensus        32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           32 IKQGEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999999998776553

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.53  E-value=4.3e-07  Score=69.85  Aligned_cols=112  Identities=16%  Similarity=0.100  Sum_probs=60.7

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhcccc-ccCCCCCeEEEEecccc----Cc-hHHHHHHHHHHHHHhhCCCceEEEE
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPV-EFGGLGGKAIYIGKCLG----FY-TEQSAVINYLDKFVSEHKDVKVVII  146 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~-~~~~~~~~vlyi~~e~~----~~-~~~~~~l~~l~~~l~~~~~~~lvVI  146 (226)
                      .+..+.|+|+||+|||+++..++....-.. .....+.++++++....    .. .+....+..+.+.+....+..+|||
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i  121 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFI  121 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEE
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            345689999999999999999988764100 00012567888874310    11 1111223333333333446789999


Q ss_pred             cCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecc
Q 036464          147 DSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNL  190 (226)
Q Consensus       147 Dsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq  190 (226)
                      |++..+.......      .-..+...|+.+....++.+|++..
T Consensus       122 De~~~l~~~~~~~------~~~~~~~~l~~~~~~~~~~~i~~~~  159 (195)
T 1jbk_A          122 DELHTMVGAGKAD------GAMDAGNMLKPALARGELHCVGATT  159 (195)
T ss_dssp             ETGGGGTT------------CCCCHHHHHHHHHTTSCCEEEEEC
T ss_pred             eCHHHHhccCccc------chHHHHHHHHHhhccCCeEEEEeCC
Confidence            9999765321000      0011233444555566676666543

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=98.53  E-value=5.7e-07  Score=85.17  Aligned_cols=119  Identities=13%  Similarity=0.110  Sum_probs=75.0

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---cCchHHHHHHHHHHHHHhhCCCceEEEE
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---GFYTEQSAVINYLDKFVSEHKDVKVVII  146 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---~~~~~~~~~l~~l~~~l~~~~~~~lvVI  146 (226)
                      |+.+-.=++|+||||+|||+|+..+|...         +..++++++..   ....+.-..+..+-+..+.. .+.+|+|
T Consensus       234 g~~~p~GILL~GPPGTGKT~LAraiA~el---------g~~~~~v~~~~l~sk~~gese~~lr~lF~~A~~~-~PsIIfI  303 (806)
T 3cf2_A          234 GVKPPRGILLYGPPGTGKTLIARAVANET---------GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN-APAIIFI  303 (806)
T ss_dssp             CCCCCCEEEEECCTTSCHHHHHHHHHTTT---------TCEEEEEEHHHHHSSCTTHHHHHHHHHHHHHTTS-CSEEEEE
T ss_pred             CCCCCCeEEEECCCCCCHHHHHHHHHHHh---------CCeEEEEEhHHhhcccchHHHHHHHHHHHHHHHc-CCeEEEE
Confidence            56666669999999999999999988764         45677787431   11122222334443334333 7899999


Q ss_pred             cCCchhhhcCcC-ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCC
Q 036464          147 DSIAFHFRHGFV-DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAE  198 (226)
Q Consensus       147 Dsl~~l~~~~~~-~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~  198 (226)
                      |++.++...... ......+.+.+++..+..+....++.||.+..-...++..
T Consensus       304 DEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~A  356 (806)
T 3cf2_A          304 DELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPA  356 (806)
T ss_dssp             ESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTT
T ss_pred             ehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHH
Confidence            999988754322 1111234566777777777667788887665544444443

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.51  E-value=1.1e-06  Score=78.64  Aligned_cols=116  Identities=17%  Similarity=0.101  Sum_probs=68.2

Q ss_pred             CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc--Cch-HHHHHHHHHHHHHhhCCCceEEE
Q 036464           69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--FYT-EQSAVINYLDKFVSEHKDVKVVI  145 (226)
Q Consensus        69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--~~~-~~~~~l~~l~~~l~~~~~~~lvV  145 (226)
                      ..+++|  +.|+||||+|||+++..++...-         .+.++++....  .+. .....+..+-..... ..+.+|+
T Consensus        46 ~~~p~g--vLL~GppGtGKT~Laraia~~~~---------~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~-~~p~ILf  113 (476)
T 2ce7_A           46 ARMPKG--ILLVGPPGTGKTLLARAVAGEAN---------VPFFHISGSDFVELFVGVGAARVRDLFAQAKA-HAPCIVF  113 (476)
T ss_dssp             CCCCSE--EEEECCTTSSHHHHHHHHHHHHT---------CCEEEEEGGGTTTCCTTHHHHHHHHHHHHHHH-TCSEEEE
T ss_pred             CCCCCe--EEEECCCCCCHHHHHHHHHHHcC---------CCeeeCCHHHHHHHHhcccHHHHHHHHHHHHh-cCCCEEE
Confidence            345555  88999999999999999988753         35777775421  111 111112222222222 2689999


Q ss_pred             EcCCchhhhcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464          146 IDSIAFHFRHGFV----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL  196 (226)
Q Consensus       146 IDsl~~l~~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~  196 (226)
                      ||++.++......    ....+.+.+.+++..+..+....++.||.+.+.....+
T Consensus       114 IDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld  168 (476)
T 2ce7_A          114 IDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD  168 (476)
T ss_dssp             EETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred             EechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence            9999987543211    11233445666666666554556788887766655444

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=98.50  E-value=4.4e-07  Score=76.40  Aligned_cols=116  Identities=16%  Similarity=0.063  Sum_probs=67.7

Q ss_pred             CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH-----HHHHHHHHHHhhCCCceE
Q 036464           69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS-----AVINYLDKFVSEHKDVKV  143 (226)
Q Consensus        69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~-----~~l~~l~~~l~~~~~~~l  143 (226)
                      -|++++..++|+||||+|||+++..++....         .+.+++++..  .....     ..+..+-+..... .+.+
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~---------~~~i~v~~~~--l~~~~~g~~~~~~~~~f~~a~~~-~p~i  111 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISIKGPE--LLTMWFGESEANVREIFDKARQA-APCV  111 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT---------CEEEEECHHH--HHHHHHTTCTTHHHHHHHHHHHT-CSEE
T ss_pred             cCCCCCceEEEECCCCcCHHHHHHHHHHHhC---------CCEEEEEhHH--HHhhhcCchHHHHHHHHHHHHhc-CCeE
Confidence            3678889999999999999999999988752         4667776421  10000     0122222222232 5799


Q ss_pred             EEEcCCchhhhcCcCC----hHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464          144 VIIDSIAFHFRHGFVD----LALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL  196 (226)
Q Consensus       144 vVIDsl~~l~~~~~~~----~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~  196 (226)
                      |+||++..+.......    .....+.+.+++..+..+....++.||.+.+....++
T Consensus       112 l~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld  168 (301)
T 3cf0_A          112 LFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIID  168 (301)
T ss_dssp             EEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSC
T ss_pred             EEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccC
Confidence            9999999776431100    0000122345555555444456777777766554443

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=98.50  E-value=3.7e-07  Score=73.44  Aligned_cols=27  Identities=33%  Similarity=0.384  Sum_probs=24.3

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      +++|+++.|.||+|+|||||+..++..
T Consensus        32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           32 IEKGNVVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             EETTCCEEEECCTTSSHHHHHHHHTTS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999999999877654

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=98.49  E-value=1.7e-07  Score=73.39  Aligned_cols=111  Identities=16%  Similarity=0.188  Sum_probs=61.7

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHH-----------------HHHHHHhhC
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVIN-----------------YLDKFVSEH  138 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~-----------------~l~~~l~~~  138 (226)
                      ++.|+|++|||||+|+.+++..          +.+++|++++.....+..+.+.                 ++.+.+...
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~----------~~~~~yiaT~~~~d~e~~~rI~~h~~~R~~~w~tiE~p~~l~~~l~~~   70 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD----------APQVLYIATSQILDDEMAARIQHHKDGRPAHWRTAECWRHLDTLITAD   70 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS----------CSSEEEEECCCC------CHHHHHHHTSCTTEEEECCSSCGGGTSCTT
T ss_pred             CEEEECCCCCcHHHHHHHHHhc----------CCCeEEEecCCCCCHHHHHHHHHHHhcCCCCcEEEEcHhhHHHHHHhh
Confidence            4789999999999999998743          3479999986311111110000                 122222222


Q ss_pred             -CCceEEEEcCCchhhhcCc-------C----ChHHHHHHH-HHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464          139 -KDVKVVIIDSIAFHFRHGF-------V----DLALRTRVL-SGIALKLMNLAKKFSLALLEPNLATTANL  196 (226)
Q Consensus       139 -~~~~lvVIDsl~~l~~~~~-------~----~~~~r~~~l-~~~~~~L~~la~~~~~~vi~~nq~~~~~~  196 (226)
                       .+.++|+||+++..+....       +    +.......+ .++...+..+.+..+-.|+++|++-..+-
T Consensus        71 ~~~~~~VLvDclt~wl~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~vlVsNEVG~GiV  141 (180)
T 1c9k_A           71 LAPDDAILLECITTMVTNLLFALGGENDPEQWDYAAMERAIDDEIQILIAACQRCPAKVVLVTNEVGMGIV  141 (180)
T ss_dssp             SCTTCEEEEECHHHHHHHHHHHC----CTTSCCHHHHHHHHHHHHHHHHHHHHHCCSEEEEECCCCCSSCC
T ss_pred             cccCCeEEEcCHHHHHHHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHccCCCEEEEEccccCCCC
Confidence             1237999999997665422       0    111001112 23334455555566677888898865443

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=98.48  E-value=6e-07  Score=76.07  Aligned_cols=73  Identities=21%  Similarity=0.259  Sum_probs=47.8

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH-HHH--HHHHHHHhhCCCceEEEEcCC
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS-AVI--NYLDKFVSEHKDVKVVIIDSI  149 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~-~~l--~~l~~~l~~~~~~~lvVIDsl  149 (226)
                      .+..+.|+||||+|||+++..++....      ..+.+++|++.+  .+...+ ..+  .....+.....++++++||++
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~------~~~~~~~~i~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi  107 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAK------KRGYRVIYSSAD--DFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDV  107 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHH------HTTCCEEEEEHH--HHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECG
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHH------HCCCEEEEEEHH--HHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCc
Confidence            456799999999999999999998875      236789999865  222111 111  011222222224789999999


Q ss_pred             chhh
Q 036464          150 AFHF  153 (226)
Q Consensus       150 ~~l~  153 (226)
                      +.+.
T Consensus       108 ~~l~  111 (324)
T 1l8q_A          108 QFLS  111 (324)
T ss_dssp             GGGT
T ss_pred             cccc
Confidence            9754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.47  E-value=6.9e-07  Score=81.29  Aligned_cols=109  Identities=15%  Similarity=0.092  Sum_probs=68.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC---CCCeEEEEeccccC----c-hHHHH----------------
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG---LGGKAIYIGKCLGF----Y-TEQSA----------------  126 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~---~~~~vlyi~~e~~~----~-~~~~~----------------  126 (226)
                      +++|+++.|.||+|+|||||+..++....  ++.|.   .+.++-|+......    . .+.+.                
T Consensus       291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~  368 (538)
T 3ozx_A          291 AKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEKQILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEE  368 (538)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSCCCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHH
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCeeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHHH
Confidence            67999999999999999999987775432  22211   23345555432100    0 00000                


Q ss_pred             -----------------------HHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCC
Q 036464          127 -----------------------VINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSL  183 (226)
Q Consensus       127 -----------------------~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~  183 (226)
                                             ..-.+...+.  .+++++++|++++.++.     ..+    ..+++.|++++++.+.
T Consensus       369 ~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~--~~p~lLlLDEPT~gLD~-----~~~----~~i~~~l~~l~~~~g~  437 (538)
T 3ozx_A          369 VTKRLNLHRLLESNVNDLSGGELQKLYIAATLA--KEADLYVLDQPSSYLDV-----EER----YIVAKAIKRVTRERKA  437 (538)
T ss_dssp             TTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHH--SCCSEEEEESTTTTCCH-----HHH----HHHHHHHHHHHHHTTC
T ss_pred             HHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHH--cCCCEEEEeCCccCCCH-----HHH----HHHHHHHHHHHHhCCC
Confidence                                   0011222222  26899999999986633     222    3677788888888999


Q ss_pred             EEEEecccc
Q 036464          184 ALLEPNLAT  192 (226)
Q Consensus       184 ~vi~~nq~~  192 (226)
                      +||++.|-.
T Consensus       438 tvi~vsHdl  446 (538)
T 3ozx_A          438 VTFIIDHDL  446 (538)
T ss_dssp             EEEEECSCH
T ss_pred             EEEEEeCCH
Confidence            999888864

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=98.46  E-value=1.2e-06  Score=75.50  Aligned_cols=112  Identities=13%  Similarity=0.170  Sum_probs=61.2

Q ss_pred             CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc--cCc-hHHHHHHHHHHHHHhhCCCceEEE
Q 036464           69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL--GFY-TEQSAVINYLDKFVSEHKDVKVVI  145 (226)
Q Consensus        69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~--~~~-~~~~~~l~~l~~~l~~~~~~~lvV  145 (226)
                      ++..+..-++|+||||+|||+++..++....         .++++++...  ..+ .+....+..+....... .+.+|+
T Consensus        79 ~~~~~~~~iLL~GppGtGKT~la~ala~~~~---------~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~-~~~vl~  148 (355)
T 2qp9_X           79 GNRKPTSGILLYGPPGTGKSYLAKAVATEAN---------STFFSVSSSDLVSKWMGESEKLVKQLFAMAREN-KPSIIF  148 (355)
T ss_dssp             SSCCCCCCEEEECSTTSCHHHHHHHHHHHHT---------CEEEEEEHHHHHSCC---CHHHHHHHHHHHHHT-SSEEEE
T ss_pred             cCCCCCceEEEECCCCCcHHHHHHHHHHHhC---------CCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHc-CCeEEE
Confidence            4556666689999999999999999998763         4567776431  001 11112233333333333 689999


Q ss_pred             EcCCchhhhcCcC-ChHHHHHHHHHHHHHHHHHHH-HcCCEEEEecc
Q 036464          146 IDSIAFHFRHGFV-DLALRTRVLSGIALKLMNLAK-KFSLALLEPNL  190 (226)
Q Consensus       146 IDsl~~l~~~~~~-~~~~r~~~l~~~~~~L~~la~-~~~~~vi~~nq  190 (226)
                      ||++..+...... ..........+++..+..+.. ..++.||.+.+
T Consensus       149 iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn  195 (355)
T 2qp9_X          149 IDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATN  195 (355)
T ss_dssp             EECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEES
T ss_pred             EechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecC
Confidence            9999987643211 001112233444444444322 34566664443

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.46  E-value=1.8e-06  Score=74.33  Aligned_cols=100  Identities=18%  Similarity=0.141  Sum_probs=62.1

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCC-CCeEEEEeccccCchH--------------------HHHHHHHHHHH
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL-GGKAIYIGKCLGFYTE--------------------QSAVINYLDKF  134 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~-~~~vlyi~~e~~~~~~--------------------~~~~l~~l~~~  134 (226)
                      .+.|+||||+|||+++..++....      .. +..++|+++.......                    .....+.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~  119 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYK------DKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEH  119 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT------TSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHh------hhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHH
Confidence            899999999999999999998874      23 5688999853211110                    11233445555


Q ss_pred             HhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHH--HcCCEEEEeccc
Q 036464          135 VSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAK--KFSLALLEPNLA  191 (226)
Q Consensus       135 l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~--~~~~~vi~~nq~  191 (226)
                      +....++.+||||+++.+      +    ...+..+.+.+..+..  ..++.+|++.+.
T Consensus       120 l~~~~~~~vlilDE~~~l------~----~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~  168 (389)
T 1fnn_A          120 LRERDLYMFLVLDDAFNL------A----PDILSTFIRLGQEADKLGAFRIALVIVGHN  168 (389)
T ss_dssp             HHHTTCCEEEEEETGGGS------C----HHHHHHHHHHTTCHHHHSSCCEEEEEEESS
T ss_pred             HhhcCCeEEEEEECcccc------c----hHHHHHHHHHHHhCCCCCcCCEEEEEEECC
Confidence            555556889999999865      1    1122233333333322  157888876543

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=98.46  E-value=9.2e-07  Score=74.25  Aligned_cols=75  Identities=12%  Similarity=0.034  Sum_probs=45.6

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc--cCc-hHHHH----HHHHHHHHHhhCCCce
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL--GFY-TEQSA----VINYLDKFVSEHKDVK  142 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~--~~~-~~~~~----~l~~l~~~l~~~~~~~  142 (226)
                      |.++...+.|+||||+|||+++..+|...-         .++++++...  ..+ .+...    .+....+.++. ..+.
T Consensus        32 ~~~~p~~lLl~GppGtGKT~la~aiA~~l~---------~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~-~~~~  101 (293)
T 3t15_A           32 NIKVPLILGIWGGKGQGKSFQCELVFRKMG---------INPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRK-GNMC  101 (293)
T ss_dssp             TCCCCSEEEEEECTTSCHHHHHHHHHHHHT---------CCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTT-SSCC
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHhC---------CCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhc-CCCe
Confidence            455566789999999999999999998863         4678887431  011 11111    12222222233 3689


Q ss_pred             EEEEcCCchhhh
Q 036464          143 VVIIDSIAFHFR  154 (226)
Q Consensus       143 lvVIDsl~~l~~  154 (226)
                      +|+||++..+..
T Consensus       102 vl~iDEiD~~~~  113 (293)
T 3t15_A          102 CLFINDLDAGAG  113 (293)
T ss_dssp             CEEEECCC----
T ss_pred             EEEEechhhhcC
Confidence            999999987664

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.44  E-value=1.3e-06  Score=72.25  Aligned_cols=27  Identities=22%  Similarity=0.217  Sum_probs=24.5

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      +++|+++.|.||+|+|||||+..++.-
T Consensus        29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           29 ARAGDVISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999999999877654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.42  E-value=2.6e-06  Score=78.60  Aligned_cols=111  Identities=21%  Similarity=0.164  Sum_probs=69.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCC--CCeEEEEecccc-----CchHHHHHH--------HHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL--GGKAIYIGKCLG-----FYTEQSAVI--------NYLDKFV  135 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~--~~~vlyi~~e~~-----~~~~~~~~l--------~~l~~~l  135 (226)
                      +++|+++.|.||+|+|||||+..++...  +++.|.-  ..++.|+..+..     ...+.+...        ..+.+++
T Consensus       379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~--~p~~G~I~~~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l  456 (607)
T 3bk7_A          379 IRKGEVIGIVGPNGIGKTTFVKMLAGVE--EPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELL  456 (607)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHHTSS--CCSBSCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCC--CCCceEEEEeeEEEEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHH
Confidence            4789999999999999999998877643  2222221  345677764320     001111000        0111111


Q ss_pred             hh----------------------------CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEE
Q 036464          136 SE----------------------------HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLE  187 (226)
Q Consensus       136 ~~----------------------------~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~  187 (226)
                      +.                            ..+++++++|++++.++.     ..+    ..+.+.|++++++.+.+||+
T Consensus       457 ~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~-----~~~----~~l~~~l~~l~~~~g~tvi~  527 (607)
T 3bk7_A          457 KPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDV-----EQR----LAVSRAIRHLMEKNEKTALV  527 (607)
T ss_dssp             HHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCH-----HHH----HHHHHHHHHHHHHTTCEEEE
T ss_pred             HHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCH-----HHH----HHHHHHHHHHHHhCCCEEEE
Confidence            10                            237999999999986633     222    35677788888888999999


Q ss_pred             ecccc
Q 036464          188 PNLAT  192 (226)
Q Consensus       188 ~nq~~  192 (226)
                      +.|-.
T Consensus       528 vsHd~  532 (607)
T 3bk7_A          528 VEHDV  532 (607)
T ss_dssp             ECSCH
T ss_pred             EeCCH
Confidence            98864

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.42  E-value=9.2e-07  Score=72.70  Aligned_cols=27  Identities=37%  Similarity=0.453  Sum_probs=24.9

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      +++|+++.|.||+|+|||||+..++..
T Consensus        26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           26 VPKGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999999888764

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.41  E-value=1.2e-06  Score=73.15  Aligned_cols=28  Identities=29%  Similarity=0.184  Sum_probs=24.8

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.||+|+|||||+..++...
T Consensus        44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           44 IAKGDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            7899999999999999999998776543

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.40  E-value=2e-06  Score=71.04  Aligned_cols=28  Identities=21%  Similarity=0.197  Sum_probs=25.3

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.||+|+|||||+..++...
T Consensus        43 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           43 IPSGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            7899999999999999999998877654

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=98.40  E-value=1.4e-06  Score=71.23  Aligned_cols=109  Identities=14%  Similarity=0.085  Sum_probs=59.9

Q ss_pred             EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC---chHHHHHHHHHHHHHhhCCCceEEEEcCCchhh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF---YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHF  153 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~---~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~  153 (226)
                      +.|+||||+|||+++..++...-         .++++++.....   ..+....+..+.+.... ..+.+++||++..+.
T Consensus        48 vll~G~~GtGKT~la~~la~~~~---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~-~~~~il~iDeid~l~  117 (257)
T 1lv7_A           48 VLMVGPPGTGKTLLAKAIAGEAK---------VPFFTISGSDFVEMFVGVGASRVRDMFEQAKK-AAPCIIFIDEIDAVG  117 (257)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT---------CCEEEECSCSSTTSCCCCCHHHHHHHHHHHHT-TCSEEEEETTHHHHT
T ss_pred             EEEECcCCCCHHHHHHHHHHHcC---------CCEEEEeHHHHHHHhhhhhHHHHHHHHHHHHH-cCCeeehhhhhhhhc
Confidence            88999999999999999987753         346777754210   00101112222222222 357899999998765


Q ss_pred             hcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464          154 RHGFV----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN  195 (226)
Q Consensus       154 ~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~  195 (226)
                      .....    ....+...+..++..+..+....++.||.+.+.....
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l  163 (257)
T 1lv7_A          118 RQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL  163 (257)
T ss_dssp             CCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTS
T ss_pred             cCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhC
Confidence            43211    1122333445555555443334456666554443333

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.39  E-value=8.8e-07  Score=75.90  Aligned_cols=108  Identities=19%  Similarity=0.127  Sum_probs=63.8

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCch--------------------HHHHHHHHH
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYT--------------------EQSAVINYL  131 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~--------------------~~~~~l~~l  131 (226)
                      ..+..+.|+||+|+|||+++..++....-  .. +.+..++|+++......                    ........+
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~--~~-~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l  119 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK--KF-LGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRL  119 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHHH--HT-CSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHHH--Hh-cCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence            45678999999999999999999887641  00 00567899984311000                    011234555


Q ss_pred             HHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHH---HHcCCEEEEecccc
Q 036464          132 DKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLA---KKFSLALLEPNLAT  192 (226)
Q Consensus       132 ~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la---~~~~~~vi~~nq~~  192 (226)
                      .+.+.....+.+||||+++.+......+          .+..|.+..   ...++.+|++.+..
T Consensus       120 ~~~l~~~~~~~vlilDE~~~l~~~~~~~----------~l~~l~~~~~~~~~~~~~~I~~~~~~  173 (386)
T 2qby_A          120 VKAVRDYGSQVVIVLDEIDAFVKKYNDD----------ILYKLSRINSEVNKSKISFIGITNDV  173 (386)
T ss_dssp             HHHHHTCCSCEEEEEETHHHHHHSSCST----------HHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred             HHHHhccCCeEEEEEcChhhhhccCcCH----------HHHHHhhchhhcCCCeEEEEEEECCC
Confidence            5666655458899999999776432111          222333333   34567777766543

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.39  E-value=2.4e-06  Score=70.81  Aligned_cols=46  Identities=4%  Similarity=0.055  Sum_probs=33.3

Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      .+++++++|++++-++.     ..+    ..+...|++++++ |.+||++.|-...
T Consensus       155 ~~p~lllLDEPts~LD~-----~~~----~~l~~~l~~l~~~-g~tii~vtHd~~~  200 (266)
T 2yz2_A          155 HEPDILILDEPLVGLDR-----EGK----TDLLRIVEKWKTL-GKTVILISHDIET  200 (266)
T ss_dssp             TCCSEEEEESTTTTCCH-----HHH----HHHHHHHHHHHHT-TCEEEEECSCCTT
T ss_pred             cCCCEEEEcCccccCCH-----HHH----HHHHHHHHHHHHc-CCEEEEEeCCHHH
Confidence            37999999999976633     222    2566677777766 8999999887543

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=98.38  E-value=1.4e-06  Score=69.94  Aligned_cols=99  Identities=20%  Similarity=0.241  Sum_probs=63.6

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC-chHHHHHHHH------------HHHHHhhC
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF-YTEQSAVINY------------LDKFVSEH  138 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~-~~~~~~~l~~------------l~~~l~~~  138 (226)
                      .+|.+..++|+.|+||||.+++.+.++.      ..+.+|+++.....+ +.+. ....+            ..++++..
T Consensus        26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~------~~g~kVli~k~~~d~R~ge~-~i~s~~g~~~~a~~~~~~~~~~~~~   98 (214)
T 2j9r_A           26 QNGWIEVICGSMFSGKSEELIRRVRRTQ------FAKQHAIVFKPCIDNRYSEE-DVVSHNGLKVKAVPVSASKDIFKHI   98 (214)
T ss_dssp             CSCEEEEEECSTTSCHHHHHHHHHHHHH------HTTCCEEEEECC------------------CCEEECSSGGGGGGGC
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHH------HCCCEEEEEEeccCCcchHH-HHHhhcCCeeEEeecCCHHHHHHHH
Confidence            5689999999999999999999999987      578899988633211 1110 01111            11222222


Q ss_pred             -CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          139 -KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       139 -~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                       .++++|+||+.+.+ ..             +.+..|+.++.+ ++.||++-.-+
T Consensus        99 ~~~~dvViIDEaQF~-~~-------------~~V~~l~~l~~~-~~~Vi~~Gl~~  138 (214)
T 2j9r_A           99 TEEMDVIAIDEVQFF-DG-------------DIVEVVQVLANR-GYRVIVAGLDQ  138 (214)
T ss_dssp             CSSCCEEEECCGGGS-CT-------------THHHHHHHHHHT-TCEEEEEECSB
T ss_pred             hcCCCEEEEECcccC-CH-------------HHHHHHHHHhhC-CCEEEEEeccc
Confidence             25899999999953 21             123556666654 99999987643

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.37  E-value=8.8e-07  Score=81.57  Aligned_cols=28  Identities=25%  Similarity=0.151  Sum_probs=25.0

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.||+|+|||||+.-++...
T Consensus       378 i~~G~~~~ivG~sGsGKSTll~~l~g~~  405 (598)
T 3qf4_B          378 IKPGQKVALVGPTGSGKTTIVNLLMRFY  405 (598)
T ss_dssp             CCTTCEEEEECCTTSSTTHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcCc
Confidence            8899999999999999999998776554

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.37  E-value=3.3e-06  Score=76.79  Aligned_cols=111  Identities=20%  Similarity=0.146  Sum_probs=68.8

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCC--CCeEEEEeccccC-----chHHHHHH--------HHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL--GGKAIYIGKCLGF-----YTEQSAVI--------NYLDKFV  135 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~--~~~vlyi~~e~~~-----~~~~~~~l--------~~l~~~l  135 (226)
                      +++|+++.|.|++|+|||||+..++...  +++.|.-  ..++.|+..+...     ..+.+...        ..+.+++
T Consensus       309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~--~p~~G~i~~~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l  386 (538)
T 1yqt_A          309 IKKGEVIGIVGPNGIGKTTFVKMLAGVE--EPTEGKIEWDLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELL  386 (538)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHHTSS--CCSBCCCCCCCCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTT
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECceEEEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHH
Confidence            4689999999999999999998877643  2222221  3456777643210     01111000        0111111


Q ss_pred             hh----------------------------CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEE
Q 036464          136 SE----------------------------HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLE  187 (226)
Q Consensus       136 ~~----------------------------~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~  187 (226)
                      +.                            ..+++++++|++++.++.     ..    ...+.+.|++++++.+.+||+
T Consensus       387 ~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~-----~~----~~~i~~~l~~l~~~~g~tvi~  457 (538)
T 1yqt_A          387 KPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDV-----EQ----RLAVSRAIRHLMEKNEKTALV  457 (538)
T ss_dssp             TTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCH-----HH----HHHHHHHHHHHHHHHTCEEEE
T ss_pred             HHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH-----HH----HHHHHHHHHHHHHhCCCEEEE
Confidence            10                            237999999999986633     22    236677788888788999999


Q ss_pred             ecccc
Q 036464          188 PNLAT  192 (226)
Q Consensus       188 ~nq~~  192 (226)
                      +.|-.
T Consensus       458 vsHd~  462 (538)
T 1yqt_A          458 VEHDV  462 (538)
T ss_dssp             ECSCH
T ss_pred             EeCCH
Confidence            98864

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=98.37  E-value=2.5e-06  Score=69.02  Aligned_cols=103  Identities=17%  Similarity=0.141  Sum_probs=64.6

Q ss_pred             CCee-EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHH--------------------HHH
Q 036464           73 CREV-TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVI--------------------NYL  131 (226)
Q Consensus        73 ~G~i-~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l--------------------~~l  131 (226)
                      +|.+ +.+.|+||+|||+++++++...+      ..|.+|++++.+.....+...++                    ..+
T Consensus         4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~------~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l   77 (228)
T 2r8r_A            4 RGRLKVFLGAAPGVGKTYAMLQAAHAQL------RQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDL   77 (228)
T ss_dssp             CCCEEEEEESSTTSSHHHHHHHHHHHHH------HTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHHH------HCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccH
Confidence            4554 77899999999999999999987      46788998886532232222111                    123


Q ss_pred             HHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          132 DKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       132 ~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      .+.+..  +++++|||++...-... .....+.+.+.       . ..+.++.|+.|.|+.
T Consensus        78 ~~~L~~--~pdlvIVDElG~~~~~~-~r~~~~~qDV~-------~-~l~sgidVitT~Nlq  127 (228)
T 2r8r_A           78 DALLKA--APSLVLVDELAHTNAPG-SRHTKRWQDIQ-------E-LLAAGIDVYTTVNVQ  127 (228)
T ss_dssp             HHHHHH--CCSEEEESCTTCBCCTT-CSSSBHHHHHH-------H-HHHTTCEEEEEEEGG
T ss_pred             HHHHhc--CCCEEEEeCCCCCCccc-chhHHHHHHHH-------H-HHcCCCCEEEEcccc
Confidence            443443  58999999998431111 11122333322       1 346788899888765

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.36  E-value=9.3e-07  Score=69.59  Aligned_cols=66  Identities=17%  Similarity=0.157  Sum_probs=44.0

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHH------HHHHHHHHhhCCCceEEEEcC
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV------INYLDKFVSEHKDVKVVIIDS  148 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~------l~~l~~~l~~~~~~~lvVIDs  148 (226)
                      ..+.|+||||+|||+++..++....      ..+.+++|++..  .....+..      ...+...+.   ++++||||+
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~lilDe  123 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELA------KRNVSSLIVYVP--ELFRELKHSLQDQTMNEKLDYIK---KVPVLMLDD  123 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH------TTTCCEEEEEHH--HHHHHHHHC---CCCHHHHHHHH---HSSEEEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH------HcCCeEEEEEhH--HHHHHHHHHhccchHHHHHHHhc---CCCEEEEcC
Confidence            5688999999999999999998876      456789998853  11111100      011122222   357999999


Q ss_pred             Cch
Q 036464          149 IAF  151 (226)
Q Consensus       149 l~~  151 (226)
                      +..
T Consensus       124 i~~  126 (202)
T 2w58_A          124 LGA  126 (202)
T ss_dssp             ECC
T ss_pred             CCC
Confidence            964

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=98.36  E-value=2.3e-06  Score=73.43  Aligned_cols=83  Identities=19%  Similarity=0.191  Sum_probs=52.4

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchH--------------------HHHHHHHH
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTE--------------------QSAVINYL  131 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~--------------------~~~~l~~l  131 (226)
                      ..+..+.|+||||+|||+++..++....-.....+.+..++|+++.......                    .-.....+
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l  121 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERL  121 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence            3456799999999999999999988764100000125678899854211111                    11123444


Q ss_pred             HHHHhhCCCceEEEEcCCchhhh
Q 036464          132 DKFVSEHKDVKVVIIDSIAFHFR  154 (226)
Q Consensus       132 ~~~l~~~~~~~lvVIDsl~~l~~  154 (226)
                      .+.+....++.+||||++..+..
T Consensus       122 ~~~l~~~~~~~vlilDEi~~l~~  144 (387)
T 2v1u_A          122 VKRLSRLRGIYIIVLDEIDFLPK  144 (387)
T ss_dssp             HHHHTTSCSEEEEEEETTTHHHH
T ss_pred             HHHHhccCCeEEEEEccHhhhcc
Confidence            45555444578999999997643

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.35  E-value=1.1e-06  Score=71.72  Aligned_cols=29  Identities=24%  Similarity=0.274  Sum_probs=25.3

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.||+|+|||||+..++...
T Consensus        27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           27 SIPEGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            37899999999999999999998776543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.35  E-value=3.3e-06  Score=77.82  Aligned_cols=111  Identities=13%  Similarity=-0.026  Sum_probs=68.0

Q ss_pred             CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC--CCCeEEEEecccc----Cch-HHH---------------H
Q 036464           69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG--LGGKAIYIGKCLG----FYT-EQS---------------A  126 (226)
Q Consensus        69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~--~~~~vlyi~~e~~----~~~-~~~---------------~  126 (226)
                      |-+..|+++.|.||+|+|||||+..++...  +++.|.  ...++.|+.....    ... +.+               .
T Consensus       373 G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~--~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~  450 (608)
T 3j16_B          373 GEFSDSEILVMMGENGTGKTTLIKLLAGAL--KPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTD  450 (608)
T ss_dssp             EECCTTCEEEEESCTTSSHHHHHHHHHTSS--CCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHH
T ss_pred             CccccceEEEEECCCCCcHHHHHHHHhcCC--CCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHH
Confidence            447777999999999999999998776543  222221  1234666653210    000 000               0


Q ss_pred             HH-----------------------HHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCC
Q 036464          127 VI-----------------------NYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSL  183 (226)
Q Consensus       127 ~l-----------------------~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~  183 (226)
                      .+                       -.+...+  ..+++++++|++++.++.     ..    ...+++.|++++++.|.
T Consensus       451 ~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL--~~~p~lLlLDEPT~gLD~-----~~----~~~i~~ll~~l~~~~g~  519 (608)
T 3j16_B          451 VVKPLRIDDIIDQEVQHLSGGELQRVAIVLAL--GIPADIYLIDEPSAYLDS-----EQ----RIICSKVIRRFILHNKK  519 (608)
T ss_dssp             THHHHTSTTTSSSBSSSCCHHHHHHHHHHHHT--TSCCSEEEECCTTTTCCH-----HH----HHHHHHHHHHHHHHHTC
T ss_pred             HHHHcCChhhhcCChhhCCHHHHHHHHHHHHH--HhCCCEEEEECCCCCCCH-----HH----HHHHHHHHHHHHHhCCC
Confidence            00                       0111122  237999999999986633     22    23667778888888899


Q ss_pred             EEEEecccc
Q 036464          184 ALLEPNLAT  192 (226)
Q Consensus       184 ~vi~~nq~~  192 (226)
                      +||++.|-.
T Consensus       520 tviivtHdl  528 (608)
T 3j16_B          520 TAFIVEHDF  528 (608)
T ss_dssp             EEEEECSCH
T ss_pred             EEEEEeCCH
Confidence            999998864

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.35  E-value=2.5e-06  Score=71.10  Aligned_cols=74  Identities=16%  Similarity=0.187  Sum_probs=48.4

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc---CchHHHHHHHHHHHHHhhCCCceEEEEcC
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG---FYTEQSAVINYLDKFVSEHKDVKVVIIDS  148 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~---~~~~~~~~l~~l~~~l~~~~~~~lvVIDs  148 (226)
                      .++.-+.|+||||+|||+++..++....         .+.++++....   ...+.......+....... ++.+|+||+
T Consensus        52 ~~~~~vll~Gp~GtGKT~la~~la~~~~---------~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~vl~iDE  121 (297)
T 3b9p_A           52 APAKGLLLFGPPGNGKTLLARAVATECS---------ATFLNISAASLTSKYVGDGEKLVRALFAVARHM-QPSIIFIDE  121 (297)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHTT---------CEEEEEESTTTSSSSCSCHHHHHHHHHHHHHHT-CSEEEEEET
T ss_pred             CCCCeEEEECcCCCCHHHHHHHHHHHhC---------CCeEEeeHHHHhhcccchHHHHHHHHHHHHHHc-CCcEEEecc
Confidence            3466789999999999999999988753         45677775321   0111112233333334343 689999999


Q ss_pred             Cchhhhc
Q 036464          149 IAFHFRH  155 (226)
Q Consensus       149 l~~l~~~  155 (226)
                      +..+...
T Consensus       122 id~l~~~  128 (297)
T 3b9p_A          122 VDSLLSE  128 (297)
T ss_dssp             GGGTSBC
T ss_pred             HHHhccc
Confidence            9987643

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.34  E-value=1.2e-06  Score=80.28  Aligned_cols=28  Identities=18%  Similarity=0.194  Sum_probs=25.4

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.||+|+|||||+.-++...
T Consensus       366 i~~G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          366 IPQGKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            7899999999999999999998877654

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.33  E-value=7.1e-07  Score=82.04  Aligned_cols=28  Identities=18%  Similarity=0.202  Sum_probs=24.7

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|+||+|+|||||+.-++...
T Consensus       366 i~~Ge~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          366 VKPGSLVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             ECTTCEEEEECSSSSSHHHHHHTTTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            7899999999999999999997766544

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.33  E-value=1.2e-06  Score=80.27  Aligned_cols=28  Identities=18%  Similarity=0.249  Sum_probs=25.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.||+|+|||||+.-++...
T Consensus       366 i~~G~~~~ivG~sGsGKSTLl~~l~g~~  393 (582)
T 3b60_A          366 IPAGKTVALVGRSGSGKSTIASLITRFY  393 (582)
T ss_dssp             ECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            7899999999999999999998877654

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.33  E-value=3.6e-06  Score=70.97  Aligned_cols=57  Identities=30%  Similarity=0.313  Sum_probs=46.0

Q ss_pred             eecCchhHHHhhCCCCCC-------CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464           56 ITTSCADLDNILGGGIGC-------REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL  118 (226)
Q Consensus        56 i~Tg~~~LD~~l~GGi~~-------G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~  118 (226)
                      +....+.|+..++++...       +.++.++|++|+||||++..++....      ..+++|++++...
T Consensus        73 ~~~~~~~l~~~~~~~~~~~i~~~~~~~vi~i~G~~G~GKTT~~~~la~~~~------~~g~~v~l~~~D~  136 (297)
T 1j8m_F           73 IKIVYDELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYK------KKGFKVGLVGADV  136 (297)
T ss_dssp             HHHHHHHHHHHTTCSCCCCCSCSSSSEEEEEECSSCSSTTHHHHHHHHHHH------HTTCCEEEEECCC
T ss_pred             HHHHHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH------HCCCeEEEEecCC
Confidence            345667788888765433       88999999999999999999998886      3678999999764

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=98.32  E-value=8.3e-07  Score=70.20  Aligned_cols=104  Identities=17%  Similarity=0.055  Sum_probs=64.8

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-CchH----HHHH------HHHHHHHHhhCCC
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-FYTE----QSAV------INYLDKFVSEHKD  140 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-~~~~----~~~~------l~~l~~~l~~~~~  140 (226)
                      ..|++..|+|+.|+|||+-+++.+.+..      ..+.+|+|+..+.- .+.+    .+..      .....++.....+
T Consensus        18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~------~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~~~   91 (195)
T 1w4r_A           18 TRGQIQVILGPMFSGKSTELMRRVRRFQ------IAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALG   91 (195)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHHHHH------HTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHHHT
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHHH------HcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhccC
Confidence            3589999999999999988888888876      35789999985531 1111    1100      0111112212235


Q ss_pred             ceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCC
Q 036464          141 VKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAE  198 (226)
Q Consensus       141 ~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~  198 (226)
                      +++|+||+.+.+  .+             +...+..++ +.|+.||++..-+ ++.+.
T Consensus        92 ~DvIlIDEaQFf--k~-------------~ve~~~~L~-~~gk~VI~~GL~~-DF~~~  132 (195)
T 1w4r_A           92 VAVIGIDEGQFF--PD-------------IVEFCEAMA-NAGKTVIVAALDG-TFQRK  132 (195)
T ss_dssp             CSEEEESSGGGC--TT-------------HHHHHHHHH-HTTCEEEEEEESB-CTTSS
T ss_pred             CCEEEEEchhhh--HH-------------HHHHHHHHH-HCCCeEEEEeccc-ccccc
Confidence            899999999965  21             122335556 6899999886544 34433

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=98.31  E-value=1.6e-06  Score=72.69  Aligned_cols=79  Identities=16%  Similarity=0.123  Sum_probs=48.8

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc--CchHHHHHHHHHHHHHhhCCCceEEEEcCC
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--FYTEQSAVINYLDKFVSEHKDVKVVIIDSI  149 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl  149 (226)
                      +++.-+.|+||||+|||+++..++..+...  ......++++++....  .+...  ....+...+... ...+|+||++
T Consensus        65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~--~~~~~~~~~~~~~~~l~~~~~g~--~~~~~~~~~~~~-~~~vl~iDEi  139 (309)
T 3syl_A           65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRL--GYVRKGHLVSVTRDDLVGQYIGH--TAPKTKEVLKRA-MGGVLFIDEA  139 (309)
T ss_dssp             CCCCEEEEEECTTSSHHHHHHHHHHHHHHT--TSSSSCCEEEECGGGTCCSSTTC--HHHHHHHHHHHH-TTSEEEEETG
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHHhc--CCcCCCcEEEEcHHHhhhhcccc--cHHHHHHHHHhc-CCCEEEEECh
Confidence            345568999999999999999888876410  0012347888875421  01110  112233444433 4579999999


Q ss_pred             chhhhc
Q 036464          150 AFHFRH  155 (226)
Q Consensus       150 ~~l~~~  155 (226)
                      ..+...
T Consensus       140 d~l~~~  145 (309)
T 3syl_A          140 YYLYRP  145 (309)
T ss_dssp             GGSCCC
T ss_pred             hhhccC
Confidence            987643

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=98.30  E-value=6.2e-06  Score=74.17  Aligned_cols=115  Identities=14%  Similarity=0.120  Sum_probs=66.8

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc--cC-chHHHHHHHHHHHHHhhCCCceEEEE
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL--GF-YTEQSAVINYLDKFVSEHKDVKVVII  146 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~--~~-~~~~~~~l~~l~~~l~~~~~~~lvVI  146 (226)
                      |.++..-++|+||||+|||+++..++...         +.+++++++..  .. ..+....+..+-+..... .+.+|+|
T Consensus       234 g~~~~~~vLL~GppGtGKT~lAraia~~~---------~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~~-~p~iLfL  303 (489)
T 3hu3_A          234 GVKPPRGILLYGPPGTGKTLIARAVANET---------GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN-APAIIFI  303 (489)
T ss_dssp             TCCCCCEEEEECSTTSSHHHHHHHHHHHC---------SSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHT-CSEEEEE
T ss_pred             CCCCCCcEEEECcCCCCHHHHHHHHHHHh---------CCCEEEEEchHhhhhhcchhHHHHHHHHHHHHhc-CCcEEEe
Confidence            35666679999999999999999997764         45788887431  01 111111222222222232 5789999


Q ss_pred             cCCchhhhcCcCC-hHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          147 DSIAFHFRHGFVD-LALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       147 Dsl~~l~~~~~~~-~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      |++..+....... .......+.++++.|..+....++.||.+.+....
T Consensus       304 DEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~  352 (489)
T 3hu3_A          304 DELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNS  352 (489)
T ss_dssp             ESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGG
T ss_pred             cchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccc
Confidence            9999776532211 11122334455555555444556677765554433

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=98.29  E-value=3.8e-06  Score=66.32  Aligned_cols=98  Identities=18%  Similarity=0.148  Sum_probs=62.3

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC-chH-----H---------HHHHHHHHHHHh
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF-YTE-----Q---------SAVINYLDKFVS  136 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~-~~~-----~---------~~~l~~l~~~l~  136 (226)
                      .+|.+..++|+.|+||||.+++++.++.      ..+.+|+.+...... +.+     .         ......+.+.+.
T Consensus         6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~------~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~   79 (191)
T 1xx6_A            6 DHGWVEVIVGPMYSGKSEELIRRIRRAK------IAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFE   79 (191)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCC
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHH------HCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHh
Confidence            4689999999999999999999999986      467788887421100 000     0         000012222222


Q ss_pred             hCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          137 EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       137 ~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                        .++++|+||+.+.+ .    .         +.+..|+.++.+ ++.||++..-+
T Consensus        80 --~~~dvViIDEaqfl-~----~---------~~v~~l~~l~~~-~~~Vi~~Gl~~  118 (191)
T 1xx6_A           80 --EDTEVIAIDEVQFF-D----D---------EIVEIVNKIAES-GRRVICAGLDM  118 (191)
T ss_dssp             --TTCSEEEECSGGGS-C----T---------HHHHHHHHHHHT-TCEEEEEECSB
T ss_pred             --ccCCEEEEECCCCC-C----H---------HHHHHHHHHHhC-CCEEEEEeccc
Confidence              25899999999852 1    1         224466777765 99999985433

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=98.29  E-value=8.1e-06  Score=70.33  Aligned_cols=109  Identities=17%  Similarity=0.133  Sum_probs=60.4

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc--C-chHHHHHHHHHHHHHhhCCCceEEEEcC
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--F-YTEQSAVINYLDKFVSEHKDVKVVIIDS  148 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--~-~~~~~~~l~~l~~~l~~~~~~~lvVIDs  148 (226)
                      .+..-++|+||||+|||+++..++...         +.++++++....  . ..+....+..+....... .+.+|+||+
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~---------~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~-~~~vl~iDE  184 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQS---------GATFFSISASSLTSKWVGEGEKMVRALFAVARCQ-QPAVIFIDE  184 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHT---------TCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHT-CSEEEEEET
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc---------CCeEEEEehHHhhccccchHHHHHHHHHHHHHhc-CCeEEEEeC
Confidence            345568999999999999999998764         346788875421  1 111222333333334333 679999999


Q ss_pred             CchhhhcCcCC-hHHHHHHHHHHHHHHHHHHHH--cCCEEEEecc
Q 036464          149 IAFHFRHGFVD-LALRTRVLSGIALKLMNLAKK--FSLALLEPNL  190 (226)
Q Consensus       149 l~~l~~~~~~~-~~~r~~~l~~~~~~L~~la~~--~~~~vi~~nq  190 (226)
                      +..+....... .......+.+++..+..+...  .++.||.+.+
T Consensus       185 id~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn  229 (357)
T 3d8b_A          185 IDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATN  229 (357)
T ss_dssp             HHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEES
T ss_pred             chhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecC
Confidence            99876432111 011122344555555544322  3556664443

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.29  E-value=1.7e-06  Score=70.17  Aligned_cols=28  Identities=25%  Similarity=0.387  Sum_probs=24.8

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.||+|+|||||+..++...
T Consensus        31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           31 IERGQLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999998776543

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.29  E-value=4.5e-06  Score=75.17  Aligned_cols=116  Identities=16%  Similarity=0.111  Sum_probs=65.9

Q ss_pred             CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc--CchHHHHHHHHHHHHHhhC--CCceEE
Q 036464           69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--FYTEQSAVINYLDKFVSEH--KDVKVV  144 (226)
Q Consensus        69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--~~~~~~~~l~~l~~~l~~~--~~~~lv  144 (226)
                      .-+++|  +.|+||||+|||+|+..++....         .+.++++....  .+...  ....+..+++..  ..+.++
T Consensus        61 ~~ip~G--vLL~GppGtGKTtLaraIa~~~~---------~~~i~i~g~~~~~~~~g~--~~~~v~~lfq~a~~~~p~il  127 (499)
T 2dhr_A           61 ARIPKG--VLLVGPPGVGKTHLARAVAGEAR---------VPFITASGSDFVEMFVGV--GAARVRDLFETAKRHAPCIV  127 (499)
T ss_dssp             CCCCSE--EEEECSSSSSHHHHHHHHHHHTT---------CCEEEEEGGGGTSSCTTH--HHHHHHHHTTTSSSSSSCEE
T ss_pred             CCCCce--EEEECCCCCCHHHHHHHHHHHhC---------CCEEEEehhHHHHhhhhh--HHHHHHHHHHHHHhcCCCEE
Confidence            345666  89999999999999999887652         46788886521  11111  123344555442  246899


Q ss_pred             EEcCCchhhhcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464          145 IIDSIAFHFRHGFV----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA  197 (226)
Q Consensus       145 VIDsl~~l~~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~  197 (226)
                      +||++..+......    ....+.+.+.+++..|.....+..+.|+.+.+-....+.
T Consensus       128 ~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~  184 (499)
T 2dhr_A          128 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP  184 (499)
T ss_dssp             EEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred             EEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence            99999876532211    122333444444444433223344555555444444443

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.27  E-value=3.5e-06  Score=74.75  Aligned_cols=102  Identities=17%  Similarity=0.181  Sum_probs=60.5

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH-HHHH--HHHHHHhhCC-CceEEEEcCC
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS-AVIN--YLDKFVSEHK-DVKVVIIDSI  149 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~-~~l~--~l~~~l~~~~-~~~lvVIDsl  149 (226)
                      +..+.|+||||+|||+|+..++.....    ...+.+++|++.+.  +...+ ..+.  ....+..... ++++++||++
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~----~~~~~~v~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi  203 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQ----NEPDLRVMYITSEK--FLNDLVDSMKEGKLNEFREKYRKKVDILLIDDV  203 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHH----HCCSSCEEEEEHHH--HHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECG
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHH----hCCCCeEEEeeHHH--HHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCc
Confidence            567999999999999999999887641    02367899998652  22211 1110  1122222223 6899999999


Q ss_pred             chhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecc
Q 036464          150 AFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNL  190 (226)
Q Consensus       150 ~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq  190 (226)
                      +.+...     ...+   ..++..+..+. +.+..+|++.+
T Consensus       204 ~~l~~~-----~~~q---~~l~~~l~~l~-~~~~~iIitt~  235 (440)
T 2z4s_A          204 QFLIGK-----TGVQ---TELFHTFNELH-DSGKQIVICSD  235 (440)
T ss_dssp             GGGSSC-----HHHH---HHHHHHHHHHH-TTTCEEEEEES
T ss_pred             ccccCC-----hHHH---HHHHHHHHHHH-HCCCeEEEEEC
Confidence            975431     0112   23444554443 45666666554

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=98.26  E-value=6.9e-06  Score=71.46  Aligned_cols=110  Identities=15%  Similarity=0.122  Sum_probs=59.4

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC--ch-HHHHHHHHHHHHHhhCCCceEEEEcC
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF--YT-EQSAVINYLDKFVSEHKDVKVVIIDS  148 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~--~~-~~~~~l~~l~~~l~~~~~~~lvVIDs  148 (226)
                      .++.-++|+||||+|||+++..++...         +..+++++.....  +. +....+..+....... .+.+|+||+
T Consensus       146 ~~~~~vLL~GppGtGKT~la~aia~~~---------~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~-~~~il~iDE  215 (389)
T 3vfd_A          146 APARGLLLFGPPGNGKTMLAKAVAAES---------NATFFNISAASLTSKYVGEGEKLVRALFAVAREL-QPSIIFIDQ  215 (389)
T ss_dssp             CCCSEEEEESSTTSCHHHHHHHHHHHT---------TCEEEEECSCCC-------CHHHHHHHHHHHHHS-SSEEEEEET
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhh---------cCcEEEeeHHHhhccccchHHHHHHHHHHHHHhc-CCeEEEEEC
Confidence            345679999999999999999998764         4577888754211  01 1112233344444443 678999999


Q ss_pred             CchhhhcCcCCh-HHHHHHHHHHHHHHHHHHH--HcCCEEEEeccc
Q 036464          149 IAFHFRHGFVDL-ALRTRVLSGIALKLMNLAK--KFSLALLEPNLA  191 (226)
Q Consensus       149 l~~l~~~~~~~~-~~r~~~l~~~~~~L~~la~--~~~~~vi~~nq~  191 (226)
                      +..+........ .........++..+..+..  ..++.||.+.+.
T Consensus       216 id~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~  261 (389)
T 3vfd_A          216 VDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNR  261 (389)
T ss_dssp             GGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESC
T ss_pred             chhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCC
Confidence            998754321110 0012233344555544433  234566644443

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.26  E-value=6.2e-06  Score=79.19  Aligned_cols=113  Identities=13%  Similarity=-0.017  Sum_probs=62.6

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC-CCCe--E-----EEEeccccCchH-----HHHHHHHHHHHHhh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG-LGGK--A-----IYIGKCLGFYTE-----QSAVINYLDKFVSE  137 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~-~~~~--v-----lyi~~e~~~~~~-----~~~~l~~l~~~l~~  137 (226)
                      +++|+++.|+||+|+||||++.+++....++....- ....  +     +|-.....+...     -..-...+..++..
T Consensus       670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il~~  749 (918)
T 3thx_B          670 EDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEIIRK  749 (918)
T ss_dssp             TTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHHHHhHHHhhHHHHHHHHHHHh
Confidence            678999999999999999999998755432210000 0011  1     111100000000     00112233333433


Q ss_pred             CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHH-HHHHHHHHHcCCEEEEecccc
Q 036464          138 HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIA-LKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       138 ~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~-~~L~~la~~~~~~vi~~nq~~  192 (226)
                      ..++++|++|++++-...     ..+.    .++ ..++.++++.|++||++.|-.
T Consensus       750 a~~p~LlLLDEP~~GlD~-----~~~~----~i~~~il~~L~~~~g~tvl~vTH~~  796 (918)
T 3thx_B          750 ATSQSLVILDELGRGTST-----HDGI----AIAYATLEYFIRDVKSLTLFVTHYP  796 (918)
T ss_dssp             CCTTCEEEEESTTTTSCH-----HHHH----HHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred             ccCCCEEEEeCCCCCCCH-----HHHH----HHHHHHHHHHHHhcCCeEEEEeCcH
Confidence            457899999999965432     2232    333 345556666899999999875

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.25  E-value=1.2e-06  Score=80.29  Aligned_cols=28  Identities=25%  Similarity=0.177  Sum_probs=24.5

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|+||+|+|||||+.-++...
T Consensus       364 i~~G~~~~ivG~sGsGKSTll~~l~g~~  391 (578)
T 4a82_A          364 IEKGETVAFVGMSGGGKSTLINLIPRFY  391 (578)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            7899999999999999999997666544

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.24  E-value=6.9e-06  Score=67.01  Aligned_cols=71  Identities=20%  Similarity=0.142  Sum_probs=44.4

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc--CchHHHHHHHHHHHHHhh--CCCceEEE
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--FYTEQSAVINYLDKFVSE--HKDVKVVI  145 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--~~~~~~~~l~~l~~~l~~--~~~~~lvV  145 (226)
                      -+++|  +.|+||||+|||+++..++....         .+.++++....  .....  ....+...++.  ...+.+++
T Consensus        47 ~~~~g--~ll~G~~G~GKTtl~~~i~~~~~---------~~~i~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~i~~  113 (254)
T 1ixz_A           47 RIPKG--VLLVGPPGVGKTHLARAVAGEAR---------VPFITASGSDFVEMFVGV--GAARVRDLFETAKRHAPCIVF  113 (254)
T ss_dssp             CCCSE--EEEECCTTSSHHHHHHHHHHHTT---------CCEEEEEHHHHHHSCTTH--HHHHHHHHHHHHTTSSSEEEE
T ss_pred             CCCCe--EEEECCCCCCHHHHHHHHHHHhC---------CCEEEeeHHHHHHHHhhH--HHHHHHHHHHHHHhcCCeEEE
Confidence            35666  89999999999999999887652         35677764310  00111  11223333332  12578999


Q ss_pred             EcCCchhh
Q 036464          146 IDSIAFHF  153 (226)
Q Consensus       146 IDsl~~l~  153 (226)
                      +|++..+.
T Consensus       114 ~Deid~l~  121 (254)
T 1ixz_A          114 IDEIDAVG  121 (254)
T ss_dssp             EETHHHHH
T ss_pred             ehhhhhhh
Confidence            99997654

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.24  E-value=3.2e-06  Score=70.13  Aligned_cols=27  Identities=37%  Similarity=0.394  Sum_probs=25.0

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      +++|+++.|.||+|+|||||+..++.-
T Consensus        43 i~~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           43 VHPGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999999887764

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=98.24  E-value=1.1e-06  Score=78.11  Aligned_cols=77  Identities=19%  Similarity=0.215  Sum_probs=48.6

Q ss_pred             CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC--ch-HHHHHHHHHHHHHhhCCCceEEE
Q 036464           69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF--YT-EQSAVINYLDKFVSEHKDVKVVI  145 (226)
Q Consensus        69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~--~~-~~~~~l~~l~~~l~~~~~~~lvV  145 (226)
                      |+..+..-++|+||||+|||+++..++....        +.++++++.....  +. +....+..+....... .+.+|+
T Consensus       162 ~~~~~~~~vLL~GppGtGKT~lA~aia~~~~--------~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~-~~~vl~  232 (444)
T 2zan_A          162 GKRTPWRGILLFGPPGTGKSYLAKAVATEAN--------NSTFFSISSSDLVSKWLGESEKLVKNLFQLAREN-KPSIIF  232 (444)
T ss_dssp             GGGCCCSEEEEECSTTSSHHHHHHHHHHHCC--------SSEEEEECCC---------CCCTHHHHHHHHHHS-CSEEEE
T ss_pred             ccCCCCceEEEECCCCCCHHHHHHHHHHHcC--------CCCEEEEeHHHHHhhhcchHHHHHHHHHHHHHHc-CCeEEE
Confidence            4455667799999999999999999998762        3466777643100  00 0001123333333333 689999


Q ss_pred             EcCCchhhh
Q 036464          146 IDSIAFHFR  154 (226)
Q Consensus       146 IDsl~~l~~  154 (226)
                      ||++..+..
T Consensus       233 iDEid~l~~  241 (444)
T 2zan_A          233 IDEIDSLCG  241 (444)
T ss_dssp             ESCTTTTCC
T ss_pred             EechHhhcc
Confidence            999998754

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.22  E-value=1.8e-05  Score=70.03  Aligned_cols=40  Identities=25%  Similarity=0.163  Sum_probs=35.3

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL  118 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~  118 (226)
                      ++.++.++|++|+||||++..++....      ..+.+|+++++..
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~------~~G~kVllv~~D~  135 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYK------KRGYKVGLVAADV  135 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHH------HTTCCEEEEEECC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH------HcCCeEEEEecCc
Confidence            478999999999999999999998876      4688999999664

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.20  E-value=1.2e-05  Score=73.02  Aligned_cols=29  Identities=28%  Similarity=0.166  Sum_probs=25.5

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.||+|+|||||+.-++...
T Consensus        43 ~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           43 VVKEGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999998777543

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.19  E-value=5.1e-06  Score=71.78  Aligned_cols=101  Identities=12%  Similarity=0.039  Sum_probs=61.9

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-cC------c-------hHHHHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-GF------Y-------TEQSAVINYLDKFVS  136 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-~~------~-------~~~~~~l~~l~~~l~  136 (226)
                      ..+|.++.|+||+|+||||++..++....-     ..++.++.+.... +.      .       .......+.+...+.
T Consensus       120 ~~~~g~i~I~GptGSGKTTlL~~l~g~~~~-----~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~  194 (356)
T 3jvv_A          120 DVPRGLVLVTGPTGSGKSTTLAAMLDYLNN-----TKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALR  194 (356)
T ss_dssp             HCSSEEEEEECSTTSCHHHHHHHHHHHHHH-----HCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTT
T ss_pred             hCCCCEEEEECCCCCCHHHHHHHHHhcccC-----CCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhh
Confidence            367889999999999999999888776531     1134444443211 00      0       000112335556665


Q ss_pred             hCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464          137 EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN  195 (226)
Q Consensus       137 ~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~  195 (226)
                      .  +|+++++|+++.         .       +.+..+.+.+ +.|.+|++|.|.....
T Consensus       195 ~--~PdvillDEp~d---------~-------e~~~~~~~~~-~~G~~vl~t~H~~~~~  234 (356)
T 3jvv_A          195 E--DPDIILVGEMRD---------L-------ETIRLALTAA-ETGHLVFGTLHTTSAA  234 (356)
T ss_dssp             S--CCSEEEESCCCS---------H-------HHHHHHHHHH-HTTCEEEEEESCSSHH
T ss_pred             h--CcCEEecCCCCC---------H-------HHHHHHHHHH-hcCCEEEEEEccChHH
Confidence            3  699999999972         0       1223333444 4689999999987543

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.19  E-value=1.3e-05  Score=77.19  Aligned_cols=113  Identities=15%  Similarity=-0.058  Sum_probs=61.7

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCC-CeE-------EEEeccccCc-hHH----HHHHHHHHHHHhh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLG-GKA-------IYIGKCLGFY-TEQ----SAVINYLDKFVSE  137 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~-~~v-------lyi~~e~~~~-~~~----~~~l~~l~~~l~~  137 (226)
                      +.+|+++.|+||+|+||||++.+++....++....-.. ...       +|-.....+. ...    ..-...+..++..
T Consensus       659 ~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e~~~~a~il~~  738 (934)
T 3thx_A          659 KDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILRS  738 (934)
T ss_dssp             TTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHHHHHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhHHHhHhhhHHHHHHHHHHHHh
Confidence            56799999999999999999999865543221100000 000       1100000000 000    0112334444443


Q ss_pred             CCCceEEEEcCCchhhhcCcCChHHHHHHHHHH-HHHHHHHHHHcCCEEEEecccc
Q 036464          138 HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGI-ALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       138 ~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~-~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      ..++++|++|++++-...     ..+.    .+ ...++.++++.++++|++.|-.
T Consensus       739 a~~~sLlLLDEp~~GlD~-----~~~~----~i~~~il~~l~~~~g~~vl~aTH~~  785 (934)
T 3thx_A          739 ATKDSLIIIDELGRGTST-----YDGF----GLAWAISEYIATKIGAFCMFATHFH  785 (934)
T ss_dssp             CCTTCEEEEESCSCSSCH-----HHHH----HHHHHHHHHHHHTTCCEEEEEESCG
T ss_pred             ccCCcEEEEeCCCCCCCH-----HHHH----HHHHHHHHHHHhcCCCEEEEEcCcH
Confidence            457899999999865422     2222    22 2334455556799999999874

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.19  E-value=8.9e-06  Score=67.62  Aligned_cols=71  Identities=18%  Similarity=0.155  Sum_probs=45.9

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc--Cc-hHHHHHHHHHHHHHhhCCCceEEEEc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--FY-TEQSAVINYLDKFVSEHKDVKVVIID  147 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--~~-~~~~~~l~~l~~~l~~~~~~~lvVID  147 (226)
                      +++|  +.|+||||+|||+|+..++...-         .+.++++....  .+ .+....+..+.+..... .+.++++|
T Consensus        43 ~~~G--vlL~Gp~GtGKTtLakala~~~~---------~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~-~p~i~~~D  110 (274)
T 2x8a_A           43 TPAG--VLLAGPPGCGKTLLAKAVANESG---------LNFISVKGPELLNMYVGESERAVRQVFQRAKNS-APCVIFFD  110 (274)
T ss_dssp             CCSE--EEEESSTTSCHHHHHHHHHHHTT---------CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHT-CSEEEEEE
T ss_pred             CCCe--EEEECCCCCcHHHHHHHHHHHcC---------CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhc-CCCeEeee
Confidence            5556  99999999999999999987653         24677775421  11 12212233333333232 57899999


Q ss_pred             CCchhh
Q 036464          148 SIAFHF  153 (226)
Q Consensus       148 sl~~l~  153 (226)
                      ++..+.
T Consensus       111 eid~~~  116 (274)
T 2x8a_A          111 EVDALC  116 (274)
T ss_dssp             TCTTTC
T ss_pred             hhhhhh
Confidence            998754

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.19  E-value=8.8e-06  Score=67.27  Aligned_cols=105  Identities=13%  Similarity=0.090  Sum_probs=63.0

Q ss_pred             hhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---c----CchHH-------HH
Q 036464           61 ADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---G----FYTEQ-------SA  126 (226)
Q Consensus        61 ~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---~----~~~~~-------~~  126 (226)
                      +.|+.+.   +++|+++.|+||+|+||||++..++..+. | .   ..+.+.+.....   .    .+..|       ..
T Consensus        15 ~vl~~i~---i~~g~~v~i~Gp~GsGKSTll~~l~g~~~-~-~---~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~   86 (261)
T 2eyu_A           15 DKVLELC---HRKMGLILVTGPTGSGKSTTIASMIDYIN-Q-T---KSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKS   86 (261)
T ss_dssp             THHHHGG---GCSSEEEEEECSTTCSHHHHHHHHHHHHH-H-H---CCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSC
T ss_pred             HHHHHHh---hCCCCEEEEECCCCccHHHHHHHHHHhCC-C-C---CCCEEEEcCCcceeecCCcceeeeHHHhCCCHHH
Confidence            3555554   89999999999999999999998887653 1 1   134444443211   0    00000       11


Q ss_pred             HHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          127 VINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       127 ~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      +...+...+..  +++++++|+++     +   ...    ...   .++ .+ +.|.+|+++.|..
T Consensus        87 l~~~la~aL~~--~p~illlDEp~-----D---~~~----~~~---~l~-~~-~~g~~vl~t~H~~  133 (261)
T 2eyu_A           87 FADALRAALRE--DPDVIFVGEMR-----D---LET----VET---ALR-AA-ETGHLVFGTLHTN  133 (261)
T ss_dssp             HHHHHHHHHHH--CCSEEEESCCC-----S---HHH----HHH---HHH-HH-HTTCEEEEEECCS
T ss_pred             HHHHHHHHHhh--CCCEEEeCCCC-----C---HHH----HHH---HHH-HH-ccCCEEEEEeCcc
Confidence            23445555654  58999999997     1   111    111   222 23 4688999888864

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=98.18  E-value=1.1e-06  Score=74.31  Aligned_cols=71  Identities=20%  Similarity=0.166  Sum_probs=43.9

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHH---HHHHHHHHhhCCCceEEEEcCCc
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV---INYLDKFVSEHKDVKVVIIDSIA  150 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~---l~~l~~~l~~~~~~~lvVIDsl~  150 (226)
                      +.-+.|+||||+|||+|+..++.....     ..+.+|+|++..  .+...+..   -..+.+.+....++++||||++.
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~-----~~g~~v~~~~~~--~l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig  224 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSE-----KKGVSTTLLHFP--SFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIG  224 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHH-----HSCCCEEEEEHH--HHHHHHHCCCC----CCTTHHHHTSSEEEEETCC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHH-----hcCCcEEEEEHH--HHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCC
Confidence            577899999999999999999887651     146789998743  11111100   00011111111246899999997


Q ss_pred             h
Q 036464          151 F  151 (226)
Q Consensus       151 ~  151 (226)
                      .
T Consensus       225 ~  225 (308)
T 2qgz_A          225 A  225 (308)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=98.17  E-value=1.2e-05  Score=63.14  Aligned_cols=70  Identities=20%  Similarity=0.208  Sum_probs=43.3

Q ss_pred             EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhh----CCCceEEEEcCCchh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSE----HKDVKVVIIDSIAFH  152 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~----~~~~~lvVIDsl~~l  152 (226)
                      +.|+||||+|||+++..++....-+    +.....+.++.......+.  ....+..+...    ..+..+||||++..+
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~vliiDe~~~l  114 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALARDLFGE----NWRDNFIEMNASDERGIDV--VRHKIKEFARTAPIGGAPFKIIFLDEADAL  114 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHGG----GGGGGEEEEETTCTTCHHH--HHHHHHHHHTSCCSTTCSCEEEEEETGGGS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhcc----ccccceEEeccccccChHH--HHHHHHHHhcccCCCccCceEEEEeChhhc
Confidence            8999999999999999998876411    1223456666432112221  22233333332    236789999999864

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.16  E-value=5e-06  Score=72.63  Aligned_cols=27  Identities=22%  Similarity=0.148  Sum_probs=24.7

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      +++|+++.|.||+|+|||||+..++.-
T Consensus        44 i~~Ge~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           44 ISPGQRVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhCC
Confidence            789999999999999999999887754

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.15  E-value=1.8e-05  Score=67.65  Aligned_cols=111  Identities=15%  Similarity=0.049  Sum_probs=67.0

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc--hHHHH----------------------H
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY--TEQSA----------------------V  127 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~--~~~~~----------------------~  127 (226)
                      ++|.++.|.||+|+||||++..++....      ..+++|.+.+...+..  .+++.                      .
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~------~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v  200 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLK------NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVA  200 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHH------HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH------hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHH
Confidence            5799999999999999999999998765      2467788877553221  11111                      1


Q ss_pred             HHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHH------------------HHHHHHHHHHHHHHcCCEEEEec
Q 036464          128 INYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRV------------------LSGIALKLMNLAKKFSLALLEPN  189 (226)
Q Consensus       128 l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~------------------l~~~~~~L~~la~~~~~~vi~~n  189 (226)
                      .+.+......  ..++++||.....-..  ......-..                  -..++..++.+.++.++++|+++
T Consensus       201 ~e~l~~~~~~--~~d~vliDtaG~~~~~--~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~~~~~it~iilT  276 (328)
T 3e70_C          201 YDAIQHAKAR--GIDVVLIDTAGRSETN--RNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFNEAVKIDGIILT  276 (328)
T ss_dssp             HHHHHHHHHH--TCSEEEEEECCSCCTT--TCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHHHHSCCCEEEEE
T ss_pred             HHHHHHHHhc--cchhhHHhhccchhHH--HHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence            1222222222  4678888877632111  011000000                  02455667778888999999999


Q ss_pred             ccc
Q 036464          190 LAT  192 (226)
Q Consensus       190 q~~  192 (226)
                      |+-
T Consensus       277 KlD  279 (328)
T 3e70_C          277 KLD  279 (328)
T ss_dssp             CGG
T ss_pred             CcC
Confidence            864

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=98.14  E-value=2.5e-06  Score=80.73  Aligned_cols=113  Identities=19%  Similarity=0.136  Sum_probs=67.4

Q ss_pred             CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---cCchHHHHHHHHHHHHHhhCCCceEEE
Q 036464           69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---GFYTEQSAVINYLDKFVSEHKDVKVVI  145 (226)
Q Consensus        69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---~~~~~~~~~l~~l~~~l~~~~~~~lvV  145 (226)
                      .|+++..=++++||||+|||.++..+|...-         .+.+.++...   .-..+.-..+..+-+..++. .+.+|+
T Consensus       506 ~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~---------~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~-~P~Iif  575 (806)
T 3cf2_A          506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISIKGPELLTMWFGESEANVREIFDKARQA-APCVLF  575 (806)
T ss_dssp             SCCCCCSCCEEESSTTSSHHHHHHHHHHTTT---------CEEEECCHHHHHTTTCSSCHHHHHHHHHHHHTT-CSEEEE
T ss_pred             cCCCCCceEEEecCCCCCchHHHHHHHHHhC---------CceEEeccchhhccccchHHHHHHHHHHHHHHc-CCceee
Confidence            5677777799999999999999999998764         3444444210   00111112344555555444 789999


Q ss_pred             EcCCchhhhcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEEE-eccc
Q 036464          146 IDSIAFHFRHGFV----DLALRTRVLSGIALKLMNLAKKFSLALLE-PNLA  191 (226)
Q Consensus       146 IDsl~~l~~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi~-~nq~  191 (226)
                      ||++.++......    +.....+.+++++..+..+....++.||. ||+.
T Consensus       576 iDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p  626 (806)
T 3cf2_A          576 FDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP  626 (806)
T ss_dssp             CSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCS
T ss_pred             chhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCc
Confidence            9999988754321    11122345677777777766666777774 4443

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.14  E-value=2.2e-05  Score=70.39  Aligned_cols=42  Identities=24%  Similarity=0.147  Sum_probs=34.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL  118 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~  118 (226)
                      +.+|.++.|+|++|+||||++..++....      ..+++|++.+...
T Consensus       290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~------~~~G~V~l~g~D~  331 (503)
T 2yhs_A          290 GKAPFVILMVGVNGVGKTTTIGKLARQFE------QQGKSVMLAAGDT  331 (503)
T ss_dssp             SCTTEEEEEECCTTSSHHHHHHHHHHHHH------HTTCCEEEECCCT
T ss_pred             ccCCeEEEEECCCcccHHHHHHHHHHHhh------hcCCeEEEecCcc
Confidence            67899999999999999999999987764      2456777776543

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=98.13  E-value=2.4e-05  Score=65.34  Aligned_cols=73  Identities=22%  Similarity=0.186  Sum_probs=48.8

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHH-HH------------HHHHHHHhhCC
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSA-VI------------NYLDKFVSEHK  139 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~-~l------------~~l~~~l~~~~  139 (226)
                      +...+.|+||||+|||+++..++....      ..+.++++++........... .+            ..+...+... 
T Consensus        46 ~~~~~ll~G~~GtGKt~la~~la~~~~------~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~-  118 (311)
T 4fcw_A           46 PIGSFLFLGPTGVGKTELAKTLAATLF------DTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRR-  118 (311)
T ss_dssp             CSEEEEEESCSSSSHHHHHHHHHHHHH------SCGGGEEEEEGGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHC-
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHHHc------CCCcceEEeecccccccccHHHhcCCCCccccccccchHHHHHHhC-
Confidence            346799999999999999999998875      345678888864321111111 11            2344555544 


Q ss_pred             CceEEEEcCCchh
Q 036464          140 DVKVVIIDSIAFH  152 (226)
Q Consensus       140 ~~~lvVIDsl~~l  152 (226)
                      ...+++||++..+
T Consensus       119 ~~~vl~lDEi~~l  131 (311)
T 4fcw_A          119 PYSVILFDAIEKA  131 (311)
T ss_dssp             SSEEEEEETGGGS
T ss_pred             CCeEEEEeChhhc
Confidence            4589999999754

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.13  E-value=1e-05  Score=68.07  Aligned_cols=74  Identities=18%  Similarity=0.079  Sum_probs=50.0

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc--hHHHHHH--------------HHHHHHH
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY--TEQSAVI--------------NYLDKFV  135 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~--~~~~~~l--------------~~l~~~l  135 (226)
                      .+|.++.|+|++|+||||++..++.....     ..|.+|++++...+..  .+++...              ..+...+
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~-----~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al  177 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISML-----EKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAK  177 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHH-----TTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHH-----hcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHH
Confidence            36889999999999999999999988752     2467999999764321  1222111              1223333


Q ss_pred             hhCCCceEEEEcCCc
Q 036464          136 SEHKDVKVVIIDSIA  150 (226)
Q Consensus       136 ~~~~~~~lvVIDsl~  150 (226)
                      ....++++||||...
T Consensus       178 ~~~~~~dlvIiDT~G  192 (296)
T 2px0_A          178 ELFSEYDHVFVDTAG  192 (296)
T ss_dssp             HHGGGSSEEEEECCC
T ss_pred             HHhcCCCEEEEeCCC
Confidence            333468999999554

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.12  E-value=7.6e-06  Score=73.95  Aligned_cols=99  Identities=18%  Similarity=0.112  Sum_probs=59.1

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHH-HH------HHHHHHh-------h
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV-IN------YLDKFVS-------E  137 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~-l~------~l~~~l~-------~  137 (226)
                      ++...++|+||||+|||+++..++...         +..+++++.........+.. +.      .+..++.       .
T Consensus        75 ~~~~~lLL~GppGtGKTtla~~la~~l---------~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  145 (516)
T 1sxj_A           75 GVFRAAMLYGPPGIGKTTAAHLVAQEL---------GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNL  145 (516)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHHT---------TCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc---------CCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhc
Confidence            355689999999999999999998875         35788887653222211100 00      0111111       1


Q ss_pred             CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecc
Q 036464          138 HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNL  190 (226)
Q Consensus       138 ~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq  190 (226)
                      ..+..+||||++..+.....           ..+..|.++.++.++.+|++..
T Consensus       146 ~~~~~vliIDEid~l~~~~~-----------~~l~~L~~~l~~~~~~iIli~~  187 (516)
T 1sxj_A          146 NGKHFVIIMDEVDGMSGGDR-----------GGVGQLAQFCRKTSTPLILICN  187 (516)
T ss_dssp             STTSEEEEECSGGGCCTTST-----------THHHHHHHHHHHCSSCEEEEES
T ss_pred             cCCCeEEEEECCCccchhhH-----------HHHHHHHHHHHhcCCCEEEEEc
Confidence            23678999999997654321           1234455555666666665544

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.12  E-value=4.7e-05  Score=64.28  Aligned_cols=40  Identities=30%  Similarity=0.337  Sum_probs=32.7

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL  118 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~  118 (226)
                      +|+++.|+||+|+||||++..++....      ..+++|.+.+...
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~------~~~g~V~l~g~D~  140 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ------NLGKKVMFCAGDT  140 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHH------TTTCCEEEECCCC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHH------hcCCEEEEEeecC
Confidence            689999999999999999999998775      2456777776543

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=98.12  E-value=1e-05  Score=69.53  Aligned_cols=79  Identities=11%  Similarity=0.066  Sum_probs=47.7

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccc-cCCC-CCeEEEEeccccC-chHHH---------------------HHHH
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVE-FGGL-GGKAIYIGKCLGF-YTEQS---------------------AVIN  129 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~-~~~~-~~~vlyi~~e~~~-~~~~~---------------------~~l~  129 (226)
                      +..+.|+||||+|||+++..++....-... ..+. +..++|+++.... ....+                     ..+.
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  124 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYID  124 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHH
Confidence            458999999999999999999887631000 0012 6688999853211 11110                     1123


Q ss_pred             HHHHHHhhCCCceEEEEcCCchhhh
Q 036464          130 YLDKFVSEHKDVKVVIIDSIAFHFR  154 (226)
Q Consensus       130 ~l~~~l~~~~~~~lvVIDsl~~l~~  154 (226)
                      .+.+.+... +. +||||++..+..
T Consensus       125 ~l~~~l~~~-~~-vlilDEi~~l~~  147 (384)
T 2qby_B          125 KIKNGTRNI-RA-IIYLDEVDTLVK  147 (384)
T ss_dssp             HHHHHHSSS-CE-EEEEETTHHHHH
T ss_pred             HHHHHhccC-CC-EEEEECHHHhcc
Confidence            333344333 33 999999997653

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=98.11  E-value=2.2e-05  Score=66.18  Aligned_cols=67  Identities=22%  Similarity=0.266  Sum_probs=46.2

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhC---CCceEEEEcCCch
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEH---KDVKVVIIDSIAF  151 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~---~~~~lvVIDsl~~  151 (226)
                      .++.++||||+|||+++..++...         +.++++++..... .+.  ....+..+....   .+.++||||++..
T Consensus        49 ~~~L~~G~~G~GKT~la~~la~~l---------~~~~~~i~~~~~~-~~~--i~~~~~~~~~~~~~~~~~~vliiDEi~~  116 (324)
T 3u61_B           49 HIILHSPSPGTGKTTVAKALCHDV---------NADMMFVNGSDCK-IDF--VRGPLTNFASAASFDGRQKVIVIDEFDR  116 (324)
T ss_dssp             SEEEECSSTTSSHHHHHHHHHHHT---------TEEEEEEETTTCC-HHH--HHTHHHHHHHBCCCSSCEEEEEEESCCC
T ss_pred             eEEEeeCcCCCCHHHHHHHHHHHh---------CCCEEEEcccccC-HHH--HHHHHHHHHhhcccCCCCeEEEEECCcc
Confidence            578999999999999999998775         3578899865322 121  122233334332   2689999999986


Q ss_pred             hh
Q 036464          152 HF  153 (226)
Q Consensus       152 l~  153 (226)
                      +.
T Consensus       117 l~  118 (324)
T 3u61_B          117 SG  118 (324)
T ss_dssp             GG
T ss_pred             cC
Confidence            53

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.10  E-value=7.5e-06  Score=81.68  Aligned_cols=28  Identities=18%  Similarity=0.242  Sum_probs=25.3

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+.+.|+||+|+|||||+.-+...+
T Consensus       441 i~~G~~vaivG~sGsGKSTll~ll~~~~  468 (1321)
T 4f4c_A          441 VNAGQTVALVGSSGCGKSTIISLLLRYY  468 (1321)
T ss_dssp             ECTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred             ecCCcEEEEEecCCCcHHHHHHHhcccc
Confidence            7999999999999999999997776655

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.09  E-value=5.3e-06  Score=75.42  Aligned_cols=27  Identities=26%  Similarity=0.222  Sum_probs=24.0

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      .++|+++.|.||+|+|||||+..++..
T Consensus        22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A           22 PKNNTILGVLGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             CCTTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhcC
Confidence            568999999999999999999877754

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.09  E-value=4.7e-05  Score=64.19  Aligned_cols=40  Identities=30%  Similarity=0.219  Sum_probs=31.9

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK  116 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~  116 (226)
                      +++|+++.|.|++|+||||++..++.... |     .+++|.+...
T Consensus        97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~-~-----~~g~V~l~g~  136 (302)
T 3b9q_A           97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK-N-----EGTKVLMAAG  136 (302)
T ss_dssp             SSSCEEEEEECCTTSCHHHHHHHHHHHHH-H-----TTCCEEEECC
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHH-H-----cCCeEEEEee
Confidence            56899999999999999999999988764 1     3456666553

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.08  E-value=2.5e-06  Score=85.12  Aligned_cols=39  Identities=21%  Similarity=0.231  Sum_probs=30.6

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK  116 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~  116 (226)
                      +++|+.+.|+|++|+||||++.-+.+-+-       +..+.++||+
T Consensus      1102 I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~-------p~~G~I~iDG 1140 (1321)
T 4f4c_A         1102 VEPGQTLALVGPSGCGKSTVVALLERFYD-------TLGGEIFIDG 1140 (1321)
T ss_dssp             ECTTCEEEEECSTTSSTTSHHHHHTTSSC-------CSSSEEEETT
T ss_pred             ECCCCEEEEECCCCChHHHHHHHHhcCcc-------CCCCEEEECC
Confidence            78999999999999999999977766542       3445566663

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.08  E-value=1.8e-05  Score=65.56  Aligned_cols=72  Identities=22%  Similarity=0.116  Sum_probs=44.4

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc--C-chHHHHHHHHHHHHHhhCCCceEEEE
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--F-YTEQSAVINYLDKFVSEHKDVKVVII  146 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--~-~~~~~~~l~~l~~~l~~~~~~~lvVI  146 (226)
                      -+++|  +.|+||||+|||+++..++....         .+.++++....  . ..+....+..+.+.... ..+.++++
T Consensus        71 ~~~~g--vll~Gp~GtGKTtl~~~i~~~~~---------~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~i~~i  138 (278)
T 1iy2_A           71 RIPKG--VLLVGPPGVGKTHLARAVAGEAR---------VPFITASGSDFVEMFVGVGAARVRDLFETAKR-HAPCIVFI  138 (278)
T ss_dssp             CCCCE--EEEECCTTSSHHHHHHHHHHHTT---------CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHT-SCSEEEEE
T ss_pred             CCCCe--EEEECCCcChHHHHHHHHHHHcC---------CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHh-cCCcEEeh
Confidence            35566  89999999999999999887652         35677764310  0 11111112222222222 25789999


Q ss_pred             cCCchhh
Q 036464          147 DSIAFHF  153 (226)
Q Consensus       147 Dsl~~l~  153 (226)
                      |++..+.
T Consensus       139 Deid~l~  145 (278)
T 1iy2_A          139 DEIDAVG  145 (278)
T ss_dssp             ETHHHHH
T ss_pred             hhhHhhh
Confidence            9998654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.08  E-value=2.9e-05  Score=71.59  Aligned_cols=29  Identities=31%  Similarity=0.162  Sum_probs=25.3

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.||+|+|||||+.-++...
T Consensus       113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A          113 IVKDGMVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             CCCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            47899999999999999999998776543

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=98.05  E-value=1.8e-05  Score=64.10  Aligned_cols=99  Identities=17%  Similarity=0.078  Sum_probs=61.6

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-CchHHHHH----------HHHHHHHHhhCCC
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-FYTEQSAV----------INYLDKFVSEHKD  140 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-~~~~~~~~----------l~~l~~~l~~~~~  140 (226)
                      ..|.+..++|+.|+||||-+++.+.++.      ..+.+|+++....- .+...+..          +....++++...+
T Consensus        17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~------~~g~kvli~kp~~D~Ryg~~i~sr~G~~~~a~~i~~~~di~~~~~~   90 (234)
T 2orv_A           17 TRGQIQVILGPMFSGKSTELMRRVRRFQ------IAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEALG   90 (234)
T ss_dssp             -CCEEEEEECCTTSCHHHHHHHHHHHHH------TTTCCEEEEEETTCCCC-----------CEEEEESSGGGGHHHHTT
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHHH------HCCCeEEEEeecCCccchHHHHhhcCCeeEEEecCCHHHHHHHhcc
Confidence            3589999999999999999999999987      57888888863320 11111100          0000111111136


Q ss_pred             ceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          141 VKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       141 ~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      +++|+||+.+.+.     +       +.+++    ++..+.|+.||++..-+
T Consensus        91 ~dvViIDEaQF~~-----~-------v~el~----~~l~~~gi~VI~~GL~~  126 (234)
T 2orv_A           91 VAVIGIDEGQFFP-----D-------IVEFC----EAMANAGKTVIVAALDG  126 (234)
T ss_dssp             CSEEEESSGGGCT-----T-------HHHHH----HHHHHTTCEEEEECCSB
T ss_pred             CCEEEEEchhhhh-----h-------HHHHH----HHHHhCCCEEEEEeccc
Confidence            8999999999642     1       22333    33345899999987654

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=98.05  E-value=1.1e-05  Score=66.45  Aligned_cols=74  Identities=20%  Similarity=0.166  Sum_probs=46.6

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc--cCchHHHHHHHHHHHHHhh--CCCceEEEE
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL--GFYTEQSAVINYLDKFVSE--HKDVKVVII  146 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~--~~~~~~~~~l~~l~~~l~~--~~~~~lvVI  146 (226)
                      .++..-+.|+||||+|||+++..++...-         .+.++++...  ....+ ......+...+..  ..+..+|+|
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~---------~~~~~i~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~vl~i  130 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEESN---------FPFIKICSPDKMIGFSE-TAKCQAMKKIFDDAYKSQLSCVVV  130 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHHT---------CSEEEEECGGGCTTCCH-HHHHHHHHHHHHHHHTSSEEEEEE
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHhC---------CCEEEEeCHHHhcCCch-HHHHHHHHHHHHHHHhcCCcEEEE
Confidence            45566799999999999999999988742         3566665321  11111 1112223333322  236899999


Q ss_pred             cCCchhhh
Q 036464          147 DSIAFHFR  154 (226)
Q Consensus       147 Dsl~~l~~  154 (226)
                      |++..+..
T Consensus       131 DEid~l~~  138 (272)
T 1d2n_A          131 DDIERLLD  138 (272)
T ss_dssp             CCHHHHTT
T ss_pred             EChhhhhc
Confidence            99997753

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.04  E-value=1.5e-05  Score=74.17  Aligned_cols=45  Identities=7%  Similarity=0.048  Sum_probs=31.2

Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      ++++++++|++++.++...         ...++..|+++.+ .|.|||++.|-..
T Consensus       221 p~~~lLlLDEPtsgLD~~~---------~~~l~~~l~~l~~-~g~tvi~vtHd~~  265 (670)
T 3ux8_A          221 LTGVLYVLDEPSIGLHQRD---------NDRLIATLKSMRD-LGNTLIVVEHDED  265 (670)
T ss_dssp             CCSCEEEEECTTTTCCGGG---------HHHHHHHHHHHHH-TTCEEEEECCCHH
T ss_pred             CCCCEEEEECCccCCCHHH---------HHHHHHHHHHHHH-cCCEEEEEeCCHH
Confidence            3455999999998775421         2255666777754 5899999988653

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.03  E-value=3.7e-05  Score=64.99  Aligned_cols=42  Identities=24%  Similarity=0.094  Sum_probs=36.0

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL  118 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~  118 (226)
                      ..++.++.|+|++|+||||++..+|....      ..+++|++++...
T Consensus       101 ~~~~~vi~ivG~~GsGKTTl~~~LA~~l~------~~g~kV~lv~~D~  142 (306)
T 1vma_A          101 PEPPFVIMVVGVNGTGKTTSCGKLAKMFV------DEGKSVVLAAADT  142 (306)
T ss_dssp             SSSCEEEEEECCTTSSHHHHHHHHHHHHH------HTTCCEEEEEECT
T ss_pred             CCCCeEEEEEcCCCChHHHHHHHHHHHHH------hcCCEEEEEcccc
Confidence            35789999999999999999999998876      3577899998764

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.03  E-value=8.3e-06  Score=81.16  Aligned_cols=28  Identities=14%  Similarity=0.149  Sum_probs=24.9

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|+||+|+|||||+.-++..+
T Consensus       413 i~~G~~~~ivG~sGsGKSTl~~ll~g~~  440 (1284)
T 3g5u_A          413 VKSGQTVALVGNSGCGKSTTVQLMQRLY  440 (1284)
T ss_dssp             ECTTCEEEEECCSSSSHHHHHHHTTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999997776554

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.02  E-value=7.1e-06  Score=75.61  Aligned_cols=27  Identities=30%  Similarity=0.208  Sum_probs=24.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      +++|+++.|.||+|+|||||+.-++..
T Consensus       100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gl  126 (608)
T 3j16_B          100 PRPGQVLGLVGTNGIGKSTALKILAGK  126 (608)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCCCCEEEEECCCCChHHHHHHHHhcC
Confidence            679999999999999999999877654

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.02  E-value=4.3e-05  Score=67.73  Aligned_cols=40  Identities=25%  Similarity=0.140  Sum_probs=35.2

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL  118 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~  118 (226)
                      ++.++.++|++|+||||++..+|..+.      ..+.+|+.+++..
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~------~~G~kVllv~~D~  138 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQ------KRGYKVGVVCSDT  138 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH------TTTCCEEEEECCC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHH------HCCCeEEEEeCCC
Confidence            368999999999999999999998887      5788999999764

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.02  E-value=7e-05  Score=64.66  Aligned_cols=40  Identities=30%  Similarity=0.219  Sum_probs=31.7

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK  116 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~  116 (226)
                      +++|+++.|+|++|+||||++..++.... |     .+++|.+...
T Consensus       154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~-~-----~~G~V~l~g~  193 (359)
T 2og2_A          154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLK-N-----EGTKVLMAAG  193 (359)
T ss_dssp             SSSSEEEEEECCTTSCHHHHHHHHHHHHH-H-----TTCCEEEECC
T ss_pred             cCCCeEEEEEcCCCChHHHHHHHHHhhcc-c-----cCCEEEEecc
Confidence            56899999999999999999999988764 1     3456666553

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.02  E-value=5.1e-05  Score=64.57  Aligned_cols=23  Identities=22%  Similarity=0.218  Sum_probs=21.0

Q ss_pred             EEEecCCCCChHHHHHHHHHHhc
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +.|+||||+||||++..++....
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l~   61 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESIF   61 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHc
Confidence            89999999999999999998654

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=98.01  E-value=5.1e-05  Score=72.01  Aligned_cols=113  Identities=15%  Similarity=0.005  Sum_probs=62.5

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCC----CCCeE-----EEEeccccCchH-H----HHHHHHHHHHHhh
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG----LGGKA-----IYIGKCLGFYTE-Q----SAVINYLDKFVSE  137 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~----~~~~v-----lyi~~e~~~~~~-~----~~~l~~l~~~l~~  137 (226)
                      ++|+++.|+||+|+||||++.+++.....+. .+.    ....+     +|-.....+... .    ..-...+...+..
T Consensus       605 ~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q-~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~  683 (800)
T 1wb9_A          605 PQRRMLIITGPNMGGKSTYMRQTALIALMAY-IGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHN  683 (800)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-TTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCChHHHHHHHHHHHHHHh-cCcccchhcccceeHHHHHhhCCHHHHHHhhhhhhhHHHHHHHHHHHh
Confidence            6899999999999999999999987643211 000    00011     111100000000 0    0112234445544


Q ss_pred             CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          138 HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       138 ~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      ..++++|++|++++-....     .+...   ....++.+.++.++++|++.|-..
T Consensus       684 a~~psLlLLDEp~~Gtd~~-----d~~~i---~~~ll~~l~~~~g~~vl~~TH~~e  731 (800)
T 1wb9_A          684 ATEYSLVLMDEIGRGTSTY-----DGLSL---AWACAENLANKIKALTLFATHYFE  731 (800)
T ss_dssp             CCTTEEEEEESCCCCSSSS-----HHHHH---HHHHHHHHHHTTCCEEEEECSCGG
T ss_pred             ccCCCEEEEECCCCCCChh-----HHHHH---HHHHHHHHHhccCCeEEEEeCCHH
Confidence            5578999999997544321     12211   234555666556999999988753

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=98.01  E-value=1.1e-05  Score=64.66  Aligned_cols=119  Identities=15%  Similarity=0.080  Sum_probs=64.1

Q ss_pred             cCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC-ch-HHHH---------
Q 036464           58 TSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF-YT-EQSA---------  126 (226)
Q Consensus        58 Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~-~~-~~~~---------  126 (226)
                      +|.-.--.++.+--..|.+..|+|+.|+||||.+++.+.++.      ..+.+|+.+....-. +. ..+.         
T Consensus        12 ~~~~~~~~~m~~~~~~G~I~vitG~M~sGKTT~Llr~~~r~~------~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a   85 (219)
T 3e2i_A           12 SGLVPRGSHMYETYHSGWIECITGSMFSGKSEELIRRLRRGI------YAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEA   85 (219)
T ss_dssp             ---------------CCEEEEEEECTTSCHHHHHHHHHHHHH------HTTCCEEEEEEC-----------CBTTBCCEE
T ss_pred             cCcccCCceEeeccCCceEEEEECCCCCCHHHHHHHHHHHHH------HcCCceEEEEeccCCcchhhhHHHhcCCceee
Confidence            343333344444346799999999999999998888887776      356778777532100 00 0000         


Q ss_pred             -HHHHHHHHHhh-CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCC
Q 036464          127 -VINYLDKFVSE-HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAE  198 (226)
Q Consensus       127 -~l~~l~~~l~~-~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~  198 (226)
                       .+....+++.. ..++++|+||+.+.+ ..             .++..|.+++ +.|+.|++..= ..++.+.
T Consensus        86 ~~v~~~~di~~~i~~~~dvV~IDEaQFf-~~-------------~~v~~l~~la-~~gi~Vi~~GL-d~DF~~~  143 (219)
T 3e2i_A           86 INISKASEIMTHDLTNVDVIGIDEVQFF-DD-------------EIVSIVEKLS-ADGHRVIVAGL-DMDFRGE  143 (219)
T ss_dssp             EEESSGGGGGGSCCTTCSEEEECCGGGS-CT-------------HHHHHHHHHH-HTTCEEEEEEE-SBCTTSC
T ss_pred             EEeCCHHHHHHHHhcCCCEEEEechhcC-CH-------------HHHHHHHHHH-HCCCEEEEeec-ccccccC
Confidence             00111111211 236899999999953 21             3556777888 68999888663 3344444

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.01  E-value=3.5e-05  Score=71.80  Aligned_cols=44  Identities=11%  Similarity=0.005  Sum_probs=31.2

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++-++.     ..    ...++..|+++.+ .|.|||++.|-..
T Consensus       564 ~p~llllDEPt~~LD~-----~~----~~~i~~~l~~l~~-~g~tvi~vtHd~~  607 (670)
T 3ux8_A          564 GRTLYILDEPTTGLHV-----DD----IARLLDVLHRLVD-NGDTVLVIEHNLD  607 (670)
T ss_dssp             SCEEEEEESTTTTCCH-----HH----HHHHHHHHHHHHH-TTCEEEEECCCHH
T ss_pred             CCcEEEEeCCCCCCCH-----HH----HHHHHHHHHHHHH-CCCEEEEEeCCHH
Confidence            4789999999986633     11    2356666777764 4899999888654

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=97.99  E-value=2.3e-05  Score=76.21  Aligned_cols=111  Identities=12%  Similarity=-0.005  Sum_probs=60.0

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhcc-------ccccC--CCCCeEEEEeccccCch-----HHHHHHHHHHHHHhhCC
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQI-------PVEFG--GLGGKAIYIGKCLGFYT-----EQSAVINYLDKFVSEHK  139 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~l-------p~~~~--~~~~~vlyi~~e~~~~~-----~~~~~l~~l~~~l~~~~  139 (226)
                      |+++.|+||+|+||||++.+++....+       |....  ..-.. ++......+..     .-..-+..+...+....
T Consensus       789 g~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~~l~v~d~-I~~rig~~d~~~~~~stf~~em~~~a~al~la~  867 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDR-VFTRLGASDRIMSGESTFFVELSETASILMHAT  867 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEECCCSB-EEEECC---------CHHHHHHHHHHHHHHHCC
T ss_pred             CcEEEEECCCCCChHHHHHHHHHHHHHhheeEEeccCcCCCCHHHH-HHHHcCCHHHHhhchhhhHHHHHHHHHHHHhCC
Confidence            899999999999999999998544321       11000  00001 11110000000     00011222333333445


Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      ++++|++|++++-...     ..+.   ..+...|+.++++.++++|++.|-..
T Consensus       868 ~~sLlLLDEp~~Gtd~-----~dg~---~~~~~il~~L~~~~g~~vl~~TH~~e  913 (1022)
T 2o8b_B          868 AHSLVLVDELGRGTAT-----FDGT---AIANAVVKELAETIKCRTLFSTHYHS  913 (1022)
T ss_dssp             TTCEEEEECTTTTSCH-----HHHH---HHHHHHHHHHHHTSCCEEEEECCCHH
T ss_pred             CCcEEEEECCCCCCCh-----HHHH---HHHHHHHHHHHhcCCCEEEEEeCCHH
Confidence            7899999999864422     2222   12345666676666999999988753

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.98  E-value=6.5e-05  Score=58.37  Aligned_cols=23  Identities=35%  Similarity=0.514  Sum_probs=20.4

Q ss_pred             eEEEecCCCCChHHHHHHHHHHh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .+.|.||||+|||||+..++...
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999888765

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.98  E-value=5.8e-05  Score=64.58  Aligned_cols=32  Identities=28%  Similarity=0.415  Sum_probs=27.8

Q ss_pred             CCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           68 GGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        68 ~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ..|..++..++|+||||+|||+++..++....
T Consensus        64 ~~~~~~~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           64 REGKIAGRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             HTTCCTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             HcCCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            35666788999999999999999999998874

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=97.98  E-value=6.4e-05  Score=63.84  Aligned_cols=90  Identities=11%  Similarity=-0.027  Sum_probs=53.2

Q ss_pred             hHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCC-CCCeEEEEeccccCchHHH--H------------
Q 036464           62 DLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG-LGGKAIYIGKCLGFYTEQS--A------------  126 (226)
Q Consensus        62 ~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~-~~~~vlyi~~e~~~~~~~~--~------------  126 (226)
                      .|...+.+|  ++..+.|+||||+|||+++..++..........+ ..-.++|+++.......+.  .            
T Consensus        35 ~L~~~i~~~--~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~  112 (318)
T 3te6_A           35 PIYDSLMSS--QNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCG  112 (318)
T ss_dssp             HHHHHHHTT--CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--C
T ss_pred             HHHHHhcCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCc
Confidence            344455554  4566799999999999999999988742110000 1346888886432111110  0            


Q ss_pred             --HHHHHHHHHhh----CCCceEEEEcCCchhh
Q 036464          127 --VINYLDKFVSE----HKDVKVVIIDSIAFHF  153 (226)
Q Consensus       127 --~l~~l~~~l~~----~~~~~lvVIDsl~~l~  153 (226)
                        ....+.+++..    ....-+|++|++..+.
T Consensus       113 ~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~  145 (318)
T 3te6_A          113 DISLEALNFYITNVPKAKKRKTLILIQNPENLL  145 (318)
T ss_dssp             CCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC
T ss_pred             hHHHHHHHHHHHHhhhccCCceEEEEecHHHhh
Confidence              12234444432    2357899999999765

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.97  E-value=1e-05  Score=67.89  Aligned_cols=27  Identities=26%  Similarity=0.379  Sum_probs=24.4

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      +++|+++.|.||+|+|||||+..++..
T Consensus        61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           61 IERGQLLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence            789999999999999999999877654

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=97.95  E-value=6.4e-05  Score=59.38  Aligned_cols=103  Identities=14%  Similarity=0.132  Sum_probs=64.1

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-----------cCc------------------hH
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-----------GFY------------------TE  123 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-----------~~~------------------~~  123 (226)
                      ....+.+++.+|.||||.|.-++..++      +.|.+|+++..--           ...                  .+
T Consensus        27 ~~g~i~v~tG~GkGKTTaA~GlalRA~------g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~  100 (196)
T 1g5t_A           27 ERGIIIVFTGNGKGKTTAAFGTAARAV------GHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREA  100 (196)
T ss_dssp             CCCCEEEEESSSSCHHHHHHHHHHHHH------HTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHH
T ss_pred             cCceEEEECCCCCCHHHHHHHHHHHHH------HCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHH
Confidence            345677778889999999999999988      7899999995320           000                  00


Q ss_pred             HH----HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464          124 QS----AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA  191 (226)
Q Consensus       124 ~~----~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~  191 (226)
                      ..    ..++.+.+.+.+ +++++||+|++.....-.+-+.       .+++..|.+  +-.+..||+|.+.
T Consensus       101 ~~~~a~~~l~~a~~~l~~-~~yDlvILDEi~~al~~g~l~~-------~ev~~~l~~--Rp~~~~vIlTGr~  162 (196)
T 1g5t_A          101 DTAACMAVWQHGKRMLAD-PLLDMVVLDELTYMVAYDYLPL-------EEVISALNA--RPGHQTVIITGRG  162 (196)
T ss_dssp             HHHHHHHHHHHHHHHTTC-TTCSEEEEETHHHHHHTTSSCH-------HHHHHHHHT--SCTTCEEEEECSS
T ss_pred             HHHHHHHHHHHHHHHHhc-CCCCEEEEeCCCccccCCCCCH-------HHHHHHHHh--CcCCCEEEEECCC
Confidence            11    123344444443 5899999999986554443332       234444432  2345677777654

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=97.89  E-value=1.8e-05  Score=59.12  Aligned_cols=65  Identities=12%  Similarity=0.116  Sum_probs=41.2

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCchh
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFH  152 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l  152 (226)
                      +.-+.|+|+||+|||+++..++....      ..+.+.+ +++..  ..+.    ......+... ...+++||++..+
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~v-~~~~~--~~~~----~~~~~~~~~a-~~g~l~ldei~~l   88 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFGR------NAQGEFV-YRELT--PDNA----PQLNDFIALA-QGGTLVLSHPEHL   88 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSST------TTTSCCE-EEECC--TTTS----SCHHHHHHHH-TTSCEEEECGGGS
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhCC------ccCCCEE-EECCC--CCcc----hhhhcHHHHc-CCcEEEEcChHHC
Confidence            44589999999999999998887654      3455666 76542  1111    1112222222 2368999999864

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=97.89  E-value=4.2e-05  Score=68.12  Aligned_cols=47  Identities=21%  Similarity=0.145  Sum_probs=41.4

Q ss_pred             cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      .....+.||++.+|.+..  +-+|+...|.|++|+|||+|+..++.+..
T Consensus       130 ~~~e~l~TGir~ID~L~p--i~kGq~~~i~G~sGvGKTtL~~~l~~~~~  176 (473)
T 1sky_E          130 TEVEILETGIKVVDLLAP--YIKGGKIGLFGGAGVGKTVLIQELIHNIA  176 (473)
T ss_dssp             CSCCEECCSCHHHHHHSC--EETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred             ccCccccccchHHHHHhh--hccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence            346789999999999875  77889999999999999999999988765

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.88  E-value=0.00012  Score=61.88  Aligned_cols=63  Identities=16%  Similarity=0.169  Sum_probs=44.4

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCchh
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFH  152 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l  152 (226)
                      ..+.|+||||+|||+++..++...         +.+.++++......      ...+...+....+..+|+||++..+
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~---------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~vl~lDEi~~l  118 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEM---------SANIKTTAAPMIEK------SGDLAAILTNLSEGDILFIDEIHRL  118 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHT---------TCCEEEEEGGGCCS------HHHHHHHHHTCCTTCEEEEETGGGC
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHh---------CCCeEEecchhccc------hhHHHHHHHhccCCCEEEEechhhc
Confidence            347999999999999999997764         34567776542221      2234445555457799999999965

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.87  E-value=1.3e-05  Score=79.75  Aligned_cols=28  Identities=18%  Similarity=0.165  Sum_probs=25.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|+|++|+|||||+.-++.-.
T Consensus      1056 i~~Ge~v~ivG~sGsGKSTl~~~l~g~~ 1083 (1284)
T 3g5u_A         1056 VKKGQTLALVGSSGCGKSTVVQLLERFY 1083 (1284)
T ss_dssp             ECSSSEEEEECSSSTTHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence            7899999999999999999998777654

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=97.86  E-value=0.00011  Score=69.40  Aligned_cols=106  Identities=13%  Similarity=0.059  Sum_probs=56.9

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCC----CCCeEEEEe-----ccccC-----chHHHHHHHHHHHHHhhCC
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGG----LGGKAIYIG-----KCLGF-----YTEQSAVINYLDKFVSEHK  139 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~----~~~~vlyi~-----~e~~~-----~~~~~~~l~~l~~~l~~~~  139 (226)
                      |+++.|+||+|+||||++.+++....++.. |.    ....+-|++     ....+     ...-......+...+....
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~-G~~vpa~~~~i~~v~~i~~~~~~~d~l~~g~S~~~~e~~~la~il~~a~  654 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTALIALLAQV-GSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEAT  654 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHHHHHHTT-TCCBSSSEEEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCC
T ss_pred             CcEEEEECCCCCChHHHHHHHHhhhhhccc-CceeehhccceeeHHHhhccCCHHHHHHhcccHHHHHHHHHHHHHHhcc
Confidence            899999999999999999999876532211 10    001111111     00000     0000111223444454445


Q ss_pred             CceEEEEcCC---chhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          140 DVKVVIIDSI---AFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       140 ~~~lvVIDsl---~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      +++++++|++   ++.++.        ......++..|++    .++++|++.|-.
T Consensus       655 ~p~LlLLDEpgrGTs~lD~--------~~~~~~i~~~L~~----~g~~vl~~TH~~  698 (765)
T 1ewq_A          655 ENSLVLLDEVGRGTSSLDG--------VAIATAVAEALHE----RRAYTLFATHYF  698 (765)
T ss_dssp             TTEEEEEESTTTTSCHHHH--------HHHHHHHHHHHHH----HTCEEEEECCCH
T ss_pred             CCCEEEEECCCCCCCCcCH--------HHHHHHHHHHHHh----CCCEEEEEeCCH
Confidence            7899999999   443321        1111233333432    688999988864

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.86  E-value=1.6e-05  Score=70.38  Aligned_cols=84  Identities=27%  Similarity=0.300  Sum_probs=55.0

Q ss_pred             HHHhhCCC---C--CCC--eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc--hHHHHHH-----
Q 036464           63 LDNILGGG---I--GCR--EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY--TEQSAVI-----  128 (226)
Q Consensus        63 LD~~l~GG---i--~~G--~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~--~~~~~~l-----  128 (226)
                      |..+++++   +  ..+  .++.|+|++|+||||++..++....      ..+.+|++++...+..  .+++...     
T Consensus        81 l~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~------~~G~kVllv~~D~~r~~a~~qL~~~~~~~g  154 (432)
T 2v3c_C           81 LVKLLGEEAKKLELNPKKQNVILLVGIQGSGKTTTAAKLARYIQ------KRGLKPALIAADTYRPAAYEQLKQLAEKIH  154 (432)
T ss_dssp             HHHHHCCSCCCCCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHH------HHHCCEEEECCSCCCTTGGGSSHHHHHHSS
T ss_pred             HHHHhCCCCcCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH------HcCCeEEEEeccccCchHHHHHHHhhhccC
Confidence            45566654   4  223  5899999999999999999998886      3578899998763211  1111100     


Q ss_pred             --------------HHHHHHHhhCCCceEEEEcCCchh
Q 036464          129 --------------NYLDKFVSEHKDVKVVIIDSIAFH  152 (226)
Q Consensus       129 --------------~~l~~~l~~~~~~~lvVIDsl~~l  152 (226)
                                    ..+.+.+....++++||||....+
T Consensus       155 v~v~~~~~~~~dp~~i~~~~l~~~~~~D~vIIDT~G~~  192 (432)
T 2v3c_C          155 VPIYGDETRTKSPVDIVKEGMEKFKKADVLIIDTAGRH  192 (432)
T ss_dssp             CCEECCSSSCCSSSTTHHHHHHTTSSCSEEEEECCCSC
T ss_pred             cceEecCCCCCCHHHHHHHHHHHhhCCCEEEEcCCCCc
Confidence                          012233443457899999999853

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.85  E-value=2.9e-05  Score=67.62  Aligned_cols=44  Identities=25%  Similarity=0.169  Sum_probs=40.1

Q ss_pred             CceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        54 ~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ..+.||++.+|-++.  +.+|+-+.|+|++|+|||+|+.+++..+.
T Consensus       156 ~~~~tGiraID~~~p--i~rGQr~~IvG~sG~GKTtLl~~Iar~i~  199 (422)
T 3ice_A          156 STEDLTARVLDLASP--IGRGQRGLIVAPPKAGKTMLLQNIAQSIA  199 (422)
T ss_dssp             CTTHHHHHHHHHHSC--CBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred             Ccccccceeeeeeee--ecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence            568899999999986  88999999999999999999999988764

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.84  E-value=9.6e-05  Score=62.61  Aligned_cols=87  Identities=15%  Similarity=0.100  Sum_probs=47.7

Q ss_pred             hhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH-HHHHHHHHH-----
Q 036464           61 ADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS-AVINYLDKF-----  134 (226)
Q Consensus        61 ~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~-~~l~~l~~~-----  134 (226)
                      ..|...+..|-.+.  +.|+||||+|||+++..++.....|..   ....+++++.........+ ..+......     
T Consensus        47 ~~l~~~l~~~~~~~--~ll~G~~G~GKT~la~~la~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (353)
T 1sxj_D           47 TVLKKTLKSANLPH--MLFYGPPGTGKTSTILALTKELYGPDL---MKSRILELNASDERGISIVREKVKNFARLTVSKP  121 (353)
T ss_dssp             HHHHHHTTCTTCCC--EEEECSTTSSHHHHHHHHHHHHHHHHH---HTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCC
T ss_pred             HHHHHHHhcCCCCE--EEEECCCCCCHHHHHHHHHHHhCCCcc---cccceEEEccccccchHHHHHHHHHHhhhccccc
Confidence            34444444442222  899999999999999999987642110   1235666764321122221 111111111     


Q ss_pred             ------HhhCCCceEEEEcCCchh
Q 036464          135 ------VSEHKDVKVVIIDSIAFH  152 (226)
Q Consensus       135 ------l~~~~~~~lvVIDsl~~l  152 (226)
                            ....++.++|+||++..+
T Consensus       122 ~~~~~~~~~~~~~~vliiDE~~~l  145 (353)
T 1sxj_D          122 SKHDLENYPCPPYKIIILDEADSM  145 (353)
T ss_dssp             CTTHHHHSCCCSCEEEEETTGGGS
T ss_pred             chhhcccCCCCCceEEEEECCCcc
Confidence                  111235689999998864

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=97.84  E-value=6.5e-05  Score=62.43  Aligned_cols=73  Identities=21%  Similarity=0.226  Sum_probs=44.1

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC---chH--HHHHHHHHHH----HHhhCCCceEE
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF---YTE--QSAVINYLDK----FVSEHKDVKVV  144 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~---~~~--~~~~l~~l~~----~l~~~~~~~lv  144 (226)
                      +.-+.|+||||+|||+++..++....         .++++++.....   +..  .-..+..+..    .+.......+|
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l~---------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl  120 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLAN---------APFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIV  120 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHT---------CCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhC---------CCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEE
Confidence            34588999999999999999988763         357788754211   100  0011222211    11111136899


Q ss_pred             EEcCCchhhhc
Q 036464          145 IIDSIAFHFRH  155 (226)
Q Consensus       145 VIDsl~~l~~~  155 (226)
                      +||++..+...
T Consensus       121 ~iDEi~~l~~~  131 (310)
T 1ofh_A          121 FIDEIDKICKK  131 (310)
T ss_dssp             EEECGGGGSCC
T ss_pred             EEEChhhcCcc
Confidence            99999977543

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.84  E-value=6.8e-05  Score=63.74  Aligned_cols=42  Identities=24%  Similarity=0.165  Sum_probs=36.3

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL  118 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~  118 (226)
                      ..++.++.|+|++|+||||++..++....      ..+++|++++...
T Consensus       102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~------~~g~kVllid~D~  143 (320)
T 1zu4_A          102 ENRLNIFMLVGVNGTGKTTSLAKMANYYA------ELGYKVLIAAADT  143 (320)
T ss_dssp             TTSCEEEEEESSTTSSHHHHHHHHHHHHH------HTTCCEEEEECCC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHH------HCCCeEEEEeCCC
Confidence            36789999999999999999999998876      3578999998654

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.81  E-value=9.6e-05  Score=58.39  Aligned_cols=25  Identities=28%  Similarity=0.428  Sum_probs=22.3

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhc
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ..+.|+||+|+|||+++..++....
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4789999999999999999987764

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=97.81  E-value=0.00016  Score=59.18  Aligned_cols=38  Identities=21%  Similarity=0.169  Sum_probs=30.6

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      +.-+.|+|+||+|||+++..++....      ..+.+++++++.
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~~------~~~~~~~~v~~~   66 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLSS------RWQGPFISLNCA   66 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTST------TTTSCEEEEEGG
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhcC------ccCCCeEEEecC
Confidence            34588999999999999999887653      345688999865

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=97.80  E-value=0.00011  Score=65.17  Aligned_cols=68  Identities=18%  Similarity=0.155  Sum_probs=43.5

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCchh
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFH  152 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l  152 (226)
                      ..+.|+||||+|||+++..++....         .+.+.++.......+....+........ ..+..+|+||++..+
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~---------~~f~~l~a~~~~~~~ir~~~~~a~~~~~-~~~~~iLfIDEI~~l  118 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYAN---------ADVERISAVTSGVKEIREAIERARQNRN-AGRRTILFVDEVHRF  118 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTT---------CEEEEEETTTCCHHHHHHHHHHHHHHHH-TTCCEEEEEETTTCC
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhC---------CCeEEEEeccCCHHHHHHHHHHHHHhhh-cCCCcEEEEeChhhh
Confidence            4589999999999999999988753         3455566432222221122333332222 236799999999865

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.78  E-value=0.00022  Score=59.71  Aligned_cols=64  Identities=20%  Similarity=0.144  Sum_probs=44.2

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhh-CCCceEEEEcCCchh
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSE-HKDVKVVIIDSIAFH  152 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~-~~~~~lvVIDsl~~l  152 (226)
                      ...+.|+||||+|||+++..++....         .++++++.......      ..+...+.. ..+..+|+||++..+
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~~~~---------~~~~~~~~~~~~~~------~~l~~~l~~~~~~~~~l~lDEi~~l  102 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAHELG---------VNLRVTSGPAIEKP------GDLAAILANSLEEGDILFIDEIHRL  102 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHHHHT---------CCEEEECTTTCCSH------HHHHHHHTTTCCTTCEEEETTTTSC
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHhC---------CCEEEEeccccCCh------HHHHHHHHHhccCCCEEEEECCccc
Confidence            35689999999999999999988653         45677775422221      233334443 346789999999854

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=97.78  E-value=0.0001  Score=63.72  Aligned_cols=81  Identities=20%  Similarity=0.112  Sum_probs=49.8

Q ss_pred             CCeeEEE--ecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHH--------------------HHHHHH
Q 036464           73 CREVTEI--GGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ--------------------SAVINY  130 (226)
Q Consensus        73 ~G~i~~i--~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~--------------------~~~l~~  130 (226)
                      .+..+.|  +|++|+|||+++..++....-.....+.+..++|++.........                    ......
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~  128 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKA  128 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHH
Confidence            4567888  999999999999999877641000001246789998531111110                    112334


Q ss_pred             HHHHHhhCCCceEEEEcCCchhh
Q 036464          131 LDKFVSEHKDVKVVIIDSIAFHF  153 (226)
Q Consensus       131 l~~~l~~~~~~~lvVIDsl~~l~  153 (226)
                      +.+.+....++-+||||+++.+.
T Consensus       129 l~~~l~~~~~~~llvlDe~~~l~  151 (412)
T 1w5s_A          129 LVDNLYVENHYLLVILDEFQSML  151 (412)
T ss_dssp             HHHHHHHHTCEEEEEEESTHHHH
T ss_pred             HHHHHHhcCCeEEEEEeCHHHHh
Confidence            44455433367899999999764

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.77  E-value=4.8e-05  Score=65.98  Aligned_cols=98  Identities=13%  Similarity=0.066  Sum_probs=59.3

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-------CchHH-------HHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-------FYTEQ-------SAVINYLDKFVS  136 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-------~~~~~-------~~~l~~l~~~l~  136 (226)
                      +++|.++.|+||+|+||||++..++..+. |    ...+.++++.....       .+..|       ..+-..+...+.
T Consensus       133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~-~----~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~  207 (372)
T 2ewv_A          133 HRKMGLILVTGPTGSGKSTTIASMIDYIN-Q----TKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALR  207 (372)
T ss_dssp             TSSSEEEEEECSSSSSHHHHHHHHHHHHH-H----HSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTT
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHHHhhcC-c----CCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhh
Confidence            68899999999999999999998887664 1    01345555542110       00000       011234555555


Q ss_pred             hCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          137 EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       137 ~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      .  +++++++|++...         +      .+...++ .+ ..|.+|+.|.|..
T Consensus       208 ~--~pd~illdE~~d~---------e------~~~~~l~-~~-~~g~~vi~t~H~~  244 (372)
T 2ewv_A          208 E--DPDVIFVGEMRDL---------E------TVETALR-AA-ETGHLVFGTLHTN  244 (372)
T ss_dssp             S--CCSEEEESCCCSH---------H------HHHHHHH-HH-TTTCEEEECCCCC
T ss_pred             h--CcCEEEECCCCCH---------H------HHHHHHH-HH-hcCCEEEEEECcc
Confidence            3  6899999999720         0      1111233 23 4678899888864

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.77  E-value=3.4e-05  Score=65.84  Aligned_cols=97  Identities=13%  Similarity=0.002  Sum_probs=58.4

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-cC---ch--------HHHHHHHHHHHHHhhC
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-GF---YT--------EQSAVINYLDKFVSEH  138 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-~~---~~--------~~~~~l~~l~~~l~~~  138 (226)
                      +++|+++.|+|++|+|||||+..++..+.       ...+.+.++... ..   ..        ........+...+.  
T Consensus       168 i~~g~~v~i~G~~GsGKTTll~~l~g~~~-------~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~--  238 (330)
T 2pt7_A          168 IAIGKNVIVCGGTGSGKTTYIKSIMEFIP-------KEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLR--  238 (330)
T ss_dssp             HHHTCCEEEEESTTSCHHHHHHHGGGGSC-------TTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTT--
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhCCCc-------CCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhh--
Confidence            46799999999999999999987776542       234455555321 00   00        00112234444444  


Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      .+++++++|++++       .         ++...|+.+. +-+.++++|.|...
T Consensus       239 ~~p~ilildE~~~-------~---------e~~~~l~~~~-~g~~tvi~t~H~~~  276 (330)
T 2pt7_A          239 MRPDRIILGELRS-------S---------EAYDFYNVLC-SGHKGTLTTLHAGS  276 (330)
T ss_dssp             SCCSEEEECCCCS-------T---------HHHHHHHHHH-TTCCCEEEEEECSS
T ss_pred             hCCCEEEEcCCCh-------H---------HHHHHHHHHh-cCCCEEEEEEcccH
Confidence            3689999999985       1         1233455544 33456777777653

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.77  E-value=4.8e-05  Score=64.73  Aligned_cols=68  Identities=24%  Similarity=0.271  Sum_probs=41.6

Q ss_pred             EEEecCCCCChHHHHHHHHHHhccccccCCCC--CeEEEEeccccCchHHHHHHHHHHHHHhhC----CCceEEEEcCCc
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLG--GKAIYIGKCLGFYTEQSAVINYLDKFVSEH----KDVKVVIIDSIA  150 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~--~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~----~~~~lvVIDsl~  150 (226)
                      +.|+||||+|||+++..++....      +..  ..++.++.......+.+  .+.+..+....    .+.+++|||++.
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~------~~~~~~~~~~~~~~~~~~~~~i--r~~i~~~~~~~~~~~~~~~viiiDe~~  120 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIY------GKNYSNMVLELNASDDRGIDVV--RNQIKDFASTRQIFSKGFKLIILDEAD  120 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH------TTSHHHHEEEECTTSCCSHHHH--HTHHHHHHHBCCSSSCSCEEEEETTGG
T ss_pred             EEEECCCCCCHHHHHHHHHHHHc------CCCccceEEEEcCcccccHHHH--HHHHHHHHhhcccCCCCceEEEEeCCC
Confidence            89999999999999999998864      122  23555554311112221  12233333221    247999999998


Q ss_pred             hh
Q 036464          151 FH  152 (226)
Q Consensus       151 ~l  152 (226)
                      .+
T Consensus       121 ~l  122 (340)
T 1sxj_C          121 AM  122 (340)
T ss_dssp             GS
T ss_pred             CC
Confidence            64

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=97.75  E-value=0.00011  Score=61.86  Aligned_cols=31  Identities=23%  Similarity=0.233  Sum_probs=26.5

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK  116 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~  116 (226)
                      .++.|+|++|+|||+|+.+++...           +++|++.
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~-----------~~~~~~~   62 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNER-----------PGILIDC   62 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHS-----------SEEEEEH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHc-----------CcEEEEe
Confidence            689999999999999999988663           1788874

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.74  E-value=0.0001  Score=64.27  Aligned_cols=27  Identities=22%  Similarity=0.297  Sum_probs=23.1

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      -+.+| ++.|+|++|+|||+|+..+..-
T Consensus        57 ~~~~G-~~~lvG~NGaGKStLl~aI~~l   83 (415)
T 4aby_A           57 ELGGG-FCAFTGETGAGKSIIVDALGLL   83 (415)
T ss_dssp             ECCSS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred             ecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence            37889 9999999999999999776543

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.73  E-value=0.00026  Score=63.74  Aligned_cols=51  Identities=27%  Similarity=0.248  Sum_probs=38.0

Q ss_pred             hHHHhhCC---CC----CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464           62 DLDNILGG---GI----GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL  118 (226)
Q Consensus        62 ~LD~~l~G---Gi----~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~  118 (226)
                      +|..++++   ++    .+..++.|+|+||+||||++..++..+.      ..+.+|+.++...
T Consensus        82 eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~~l~------~~G~kVllVd~D~  139 (504)
T 2j37_W           82 ELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQ------RKGWKTCLICADT  139 (504)
T ss_dssp             HHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEEECC
T ss_pred             HHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHHHHH------hCCCeEEEEeccc
Confidence            35556654   23    2356899999999999999999998876      3578899998753

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=97.72  E-value=4e-05  Score=68.12  Aligned_cols=76  Identities=16%  Similarity=0.051  Sum_probs=49.5

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc--CchHHHHHHHHHHHHHhh-----CCCce
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG--FYTEQSAVINYLDKFVSE-----HKDVK  142 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~--~~~~~~~~l~~l~~~l~~-----~~~~~  142 (226)
                      |..++.-++|+||||+|||+++..++...-       .....++++....  .+.....   .+.+.+..     ...+.
T Consensus        59 ~~~~~~~iLl~GppGtGKT~la~ala~~l~-------~~~~~~~~~~~~~~~~~~~~~~---~~~~~f~~a~~~~~~~~~  128 (456)
T 2c9o_A           59 KKMAGRAVLLAGPPGTGKTALALAIAQELG-------SKVPFCPMVGSEVYSTEIKKTE---VLMENFRRAIGLRIKETK  128 (456)
T ss_dssp             TCCTTCEEEEECCTTSSHHHHHHHHHHHHC-------TTSCEEEEEGGGGCCSSSCHHH---HHHHHHHHTEEEEEEEEE
T ss_pred             CCCCCCeEEEECCCcCCHHHHHHHHHHHhC-------CCceEEEEeHHHHHHHhhhhhH---HHHHHHHHHHhhhhcCCc
Confidence            455556689999999999999999998863       3356777775421  1111111   12333322     13679


Q ss_pred             EEEEcCCchhhhc
Q 036464          143 VVIIDSIAFHFRH  155 (226)
Q Consensus       143 lvVIDsl~~l~~~  155 (226)
                      +|+||++.++...
T Consensus       129 il~iDEid~l~~~  141 (456)
T 2c9o_A          129 EVYEGEVTELTPC  141 (456)
T ss_dssp             EEEEEEEEEEEEC
T ss_pred             EEEEechhhcccc
Confidence            9999999987754

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=97.71  E-value=0.00015  Score=60.53  Aligned_cols=70  Identities=16%  Similarity=0.222  Sum_probs=41.9

Q ss_pred             EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhC----CCceEEEEcCCchh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEH----KDVKVVIIDSIAFH  152 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~----~~~~lvVIDsl~~l  152 (226)
                      +.|+||||+|||+++..++..+.-+    .....+++++..  .....-.....+..+....    .+..+||||++..+
T Consensus        49 ~ll~G~~G~GKT~la~~l~~~l~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l  122 (327)
T 1iqp_A           49 LLFAGPPGVGKTTAALALARELFGE----NWRHNFLELNAS--DERGINVIREKVKEFARTKPIGGASFKIIFLDEADAL  122 (327)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHHGG----GHHHHEEEEETT--CHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGS
T ss_pred             EEEECcCCCCHHHHHHHHHHHhcCC----cccCceEEeecc--ccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcC
Confidence            8999999999999999999886311    112346666643  1111000112233333221    35789999999864

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.70  E-value=3.5e-05  Score=57.47  Aligned_cols=60  Identities=12%  Similarity=0.022  Sum_probs=38.8

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCchh
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFH  152 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l  152 (226)
                      .-+.|+|+||+|||+++..++...         . +++++++.  ...+..     ....+... +..+++||++..+
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~~---------~-~~~~~~~~--~~~~~~-----~~~~~~~a-~~~~l~lDei~~l   87 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKNG---------T-PWVSPARV--EYLIDM-----PMELLQKA-EGGVLYVGDIAQY   87 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCTT---------S-CEECCSST--THHHHC-----HHHHHHHT-TTSEEEEEECTTC
T ss_pred             CcEEEECCCCccHHHHHHHHHHhC---------C-CeEEechh--hCChHh-----hhhHHHhC-CCCeEEEeChHHC
Confidence            348999999999999997665432         1 67777654  222211     23334433 3479999999864

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=97.70  E-value=0.00023  Score=59.98  Aligned_cols=34  Identities=18%  Similarity=0.119  Sum_probs=28.5

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      .++.|+|++|+|||+|+.+++....         ..++|++..
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~---------~~~~~~~~~   64 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELN---------LPYIYLDLR   64 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHT---------CCEEEEEGG
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcC---------CCEEEEEch
Confidence            5999999999999999999988753         247888854

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.70  E-value=9.4e-05  Score=62.10  Aligned_cols=40  Identities=25%  Similarity=0.362  Sum_probs=35.1

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL  118 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~  118 (226)
                      +|.++.++|++|+||||++..+|....      ..+++|++++...
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~------~~~~~v~l~~~d~  136 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYK------GKGRRPLLVAADT  136 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHH------HTTCCEEEEECCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH------HcCCeEEEecCCc
Confidence            689999999999999999999998876      3578999999654

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.69  E-value=5.2e-05  Score=65.17  Aligned_cols=45  Identities=18%  Similarity=0.166  Sum_probs=39.5

Q ss_pred             cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      .+.+.||+..||.++.  +.+|+++.|.|++|+|||||+..++....
T Consensus        52 ~~~~~tg~~ald~ll~--i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~   96 (347)
T 2obl_A           52 DQPFILGVRAIDGLLT--CGIGQRIGIFAGSGVGKSTLLGMICNGAS   96 (347)
T ss_dssp             CSEECCSCHHHHHHSC--EETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred             ceecCCCCEEEEeeee--ecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4567789999999975  99999999999999999999888887753

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.69  E-value=0.00013  Score=69.74  Aligned_cols=107  Identities=18%  Similarity=0.143  Sum_probs=53.4

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhcc---ccccCCCCCeEEEEeccccC----c-hHHHHHHHHHHHHHhhCCCceEEEE
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQI---PVEFGGLGGKAIYIGKCLGF----Y-TEQSAVINYLDKFVSEHKDVKVVII  146 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~l---p~~~~~~~~~vlyi~~e~~~----~-~~~~~~l~~l~~~l~~~~~~~lvVI  146 (226)
                      .-+.|+||||+|||+++..++..+.-   |..  -.+.++++++.....    + .+....+..+-..+....++.+++|
T Consensus       192 ~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~--l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~I  269 (854)
T 1qvr_A          192 NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEG--LKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFI  269 (854)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTT--STTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEE
T ss_pred             CceEEEcCCCCCHHHHHHHHHHHHhcCCCchh--hcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEE
Confidence            34789999999999999999988741   111  126688888754211    1 0111122333333333335789999


Q ss_pred             cCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEec
Q 036464          147 DSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPN  189 (226)
Q Consensus       147 Dsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~n  189 (226)
                      |++..+......  ..    -....+.|+.+..+.++.+|.+.
T Consensus       270 DEi~~l~~~~~~--~g----~~~~~~~L~~~l~~~~i~~I~at  306 (854)
T 1qvr_A          270 DELHTVVGAGKA--EG----AVDAGNMLKPALARGELRLIGAT  306 (854)
T ss_dssp             CCC-------------------------HHHHHTTCCCEEEEE
T ss_pred             ecHHHHhccCCc--cc----hHHHHHHHHHHHhCCCeEEEEec
Confidence            999977532111  00    11334556666666777777554

>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}

Probab=97.69  E-value=0.00018  Score=67.28  Aligned_cols=75  Identities=20%  Similarity=0.279  Sum_probs=53.7

Q ss_pred             CCCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEe
Q 036464            1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIG   80 (226)
Q Consensus         1 ~~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~   80 (226)
                      |++++|+|++...+.|++.||.+...+-.              +                 .++.    ++..|..+.++
T Consensus         8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~--------------~-----------------~i~~----~~~~~~~~lv~   52 (715)
T 2va8_A            8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQT--------------E-----------------AVKK----GLLEGNRLLLT   52 (715)
T ss_dssp             CBGGGSSSCHHHHHHHHTTSCCBCCHHHH--------------H-----------------HHHT----TTTTTCCEEEE
T ss_pred             CcHHHcCCCHHHHHHHHhCCCCCCCHHHH--------------H-----------------HHHH----HhcCCCcEEEE
Confidence            67889999999999999999876433210              1                 1111    23346789999


Q ss_pred             cCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           81 GVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        81 G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      ||+|+|||+.+...+.....     ..+.+++|+.
T Consensus        53 apTGsGKT~~~~l~il~~~~-----~~~~~il~i~   82 (715)
T 2va8_A           53 SPTGSGKTLIAEMGIISFLL-----KNGGKAIYVT   82 (715)
T ss_dssp             CCTTSCHHHHHHHHHHHHHH-----HSCSEEEEEC
T ss_pred             cCCCCcHHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence            99999999998777665442     2457888887

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.69  E-value=0.00018  Score=60.07  Aligned_cols=70  Identities=23%  Similarity=0.221  Sum_probs=43.1

Q ss_pred             EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhh-----CCCceEEEEcCCch
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSE-----HKDVKVVIIDSIAF  151 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~-----~~~~~lvVIDsl~~  151 (226)
                      +.|+||+|+|||+++..++....-+    .....+++++.......+.+  .+.+..+...     ..+.++||||++..
T Consensus        45 ~ll~G~~G~GKt~la~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~~~~~~~~~~~~viiiDe~~~  118 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAHELLGR----SYADGVLELNASDDRGIDVV--RNQIKHFAQKKLHLPPGKHKIVILDEADS  118 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHGG----GHHHHEEEECTTSCCSHHHH--HTHHHHHHHBCCCCCTTCCEEEEEESGGG
T ss_pred             EEEECcCCCCHHHHHHHHHHHhcCC----cccCCEEEecCccccChHHH--HHHHHHHHhccccCCCCCceEEEEECccc
Confidence            8999999999999999999886311    11235777775421122221  1222233211     22478999999986


Q ss_pred             h
Q 036464          152 H  152 (226)
Q Consensus       152 l  152 (226)
                      +
T Consensus       119 l  119 (323)
T 1sxj_B          119 M  119 (323)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.66  E-value=7.3e-05  Score=66.25  Aligned_cols=44  Identities=18%  Similarity=0.191  Sum_probs=38.4

Q ss_pred             cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ...+.||.+.||.++.  +.+|+.+.|.|++|+|||||+..++...
T Consensus       138 ~~~~~tg~~vld~vl~--i~~Gq~~~IvG~sGsGKSTLl~~Iag~~  181 (438)
T 2dpy_A          138 EHVLDTGVRAINALLT--VGRGQRMGLFAGSGVGKSVLLGMMARYT  181 (438)
T ss_dssp             CSBCCCSCHHHHHHSC--CBTTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             ceecCCCceEEeeeEE--ecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            4556678999999965  9999999999999999999988888775

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.65  E-value=0.00029  Score=68.01  Aligned_cols=26  Identities=27%  Similarity=0.235  Sum_probs=24.3

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAV   96 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~   96 (226)
                      +++|+++.|.||+|+|||||+..++.
T Consensus       458 I~~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          458 LKRARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999999998884

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.65  E-value=0.00028  Score=67.81  Aligned_cols=46  Identities=9%  Similarity=0.024  Sum_probs=32.0

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN  195 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~  195 (226)
                      +++++|+|++++.++.     .    ....++..|+++++ .|.|||++.|-...+
T Consensus       826 ~p~LLILDEPTsGLD~-----~----~~~~L~~lL~~L~~-~G~TVIvI~HdL~~i  871 (916)
T 3pih_A          826 GRTLYILDEPTVGLHF-----E----DVRKLVEVLHRLVD-RGNTVIVIEHNLDVI  871 (916)
T ss_dssp             SSEEEEEESTTTTCCH-----H----HHHHHHHHHHHHHH-TTCEEEEECCCHHHH
T ss_pred             CCCEEEEECCCCCCCH-----H----HHHHHHHHHHHHHh-cCCEEEEEeCCHHHH
Confidence            4689999999986633     1    23356667777764 588888888865433

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=97.65  E-value=0.00052  Score=58.33  Aligned_cols=79  Identities=20%  Similarity=0.202  Sum_probs=45.4

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccC---------------CCCCeEEEEeccccCchHHHHHHHHHHHHHhhC
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG---------------GLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEH  138 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~---------------~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~  138 (226)
                      ...++++||+|+|||+++..++....-+....               +....+.+++.+..........+..+.+.+...
T Consensus        24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~  103 (334)
T 1a5t_A           24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEH  103 (334)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTSC
T ss_pred             ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhhc
Confidence            34699999999999999999998875211000               011235566543100001112233344444322


Q ss_pred             ---CCceEEEEcCCchh
Q 036464          139 ---KDVKVVIIDSIAFH  152 (226)
Q Consensus       139 ---~~~~lvVIDsl~~l  152 (226)
                         .+.+++|||+...+
T Consensus       104 ~~~~~~kvviIdead~l  120 (334)
T 1a5t_A          104 ARLGGAKVVWVTDAALL  120 (334)
T ss_dssp             CTTSSCEEEEESCGGGB
T ss_pred             cccCCcEEEEECchhhc
Confidence               35799999999865

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.64  E-value=3.1e-05  Score=60.03  Aligned_cols=28  Identities=25%  Similarity=0.262  Sum_probs=24.9

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      ++++|.++.|.|+||+||||++..++..
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence            4789999999999999999999988764

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.64  E-value=5.4e-05  Score=67.49  Aligned_cols=28  Identities=25%  Similarity=0.039  Sum_probs=24.8

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.||+|+|||||+..++...
T Consensus       135 i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          135 NFEGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             SSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             eCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            6799999999999999999998877643

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.61  E-value=0.00031  Score=60.51  Aligned_cols=74  Identities=20%  Similarity=0.114  Sum_probs=42.7

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH--HHHHHHHHHHhhC------CCceE
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS--AVINYLDKFVSEH------KDVKV  143 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~--~~l~~l~~~l~~~------~~~~l  143 (226)
                      +....+.|+||||+|||+++..++...         +.++++++..........  ..-..+...+...      ....+
T Consensus        70 ~~~~~ill~Gp~GtGKT~la~~la~~l---------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v  140 (376)
T 1um8_A           70 LSKSNILLIGPTGSGKTLMAQTLAKHL---------DIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGI  140 (376)
T ss_dssp             CCCCCEEEECCTTSSHHHHHHHHHHHT---------TCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSE
T ss_pred             cCCCCEEEECCCCCCHHHHHHHHHHHh---------CCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeE
Confidence            345568999999999999999998775         245677765421100000  0001122222111      14689


Q ss_pred             EEEcCCchhhh
Q 036464          144 VIIDSIAFHFR  154 (226)
Q Consensus       144 vVIDsl~~l~~  154 (226)
                      ++||++..+..
T Consensus       141 l~iDEi~~l~~  151 (376)
T 1um8_A          141 VFIDEIDKISR  151 (376)
T ss_dssp             EEEETGGGC--
T ss_pred             EEEcCHHHHhh
Confidence            99999997653

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.60  E-value=0.00017  Score=68.06  Aligned_cols=69  Identities=25%  Similarity=0.217  Sum_probs=46.3

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCchh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFH  152 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l  152 (226)
                      .+.|+||||+|||+++..++....      +.+.++++++...+....... ...+...+... ...+|+||++..+
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~------~~~~~~i~i~~s~~~~~~~~~-~~~l~~~~~~~-~~~vl~lDEi~~~  591 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIF------GDEESMIRIDMSEYMEKHSTS-GGQLTEKVRRK-PYSVVLLDAIEKA  591 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH------SCTTCEEEEEGGGGCSSCCCC----CHHHHHHC-SSSEEEEECGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc------CCCcceEEEechhcccccccc-cchhhHHHHhC-CCeEEEEeCcccc
Confidence            689999999999999999998875      467789999964211000000 12233344443 5789999999753

>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*

Probab=97.55  E-value=0.00018  Score=67.42  Aligned_cols=75  Identities=29%  Similarity=0.317  Sum_probs=51.8

Q ss_pred             CCCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEe
Q 036464            1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIG   80 (226)
Q Consensus         1 ~~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~   80 (226)
                      |++++|||++...+.|++.||.+...+                   |..            .++.    ++..|..+.++
T Consensus         1 ~~f~~l~l~~~~~~~l~~~g~~~l~~~-------------------Q~~------------~i~~----~~~~~~~~lv~   45 (720)
T 2zj8_A            1 MRVDELRVDERIKSTLKERGIESFYPP-------------------QAE------------ALKS----GILEGKNALIS   45 (720)
T ss_dssp             CBGGGCCSCHHHHHHHHHTTCCBCCHH-------------------HHH------------HHTT----TGGGTCEEEEE
T ss_pred             CcHhhcCCCHHHHHHHHHCCCCCCCHH-------------------HHH------------HHHH----HhcCCCcEEEE
Confidence            789999999999999999999764332                   111            0111    12336789999


Q ss_pred             cCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           81 GVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        81 G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      ||+|+|||..+...+.....     ..+.+++|+.
T Consensus        46 apTGsGKT~~~~l~il~~~~-----~~~~~~l~i~   75 (720)
T 2zj8_A           46 IPTASGKTLIAEIAMVHRIL-----TQGGKAVYIV   75 (720)
T ss_dssp             CCGGGCHHHHHHHHHHHHHH-----HHCSEEEEEC
T ss_pred             cCCccHHHHHHHHHHHHHHH-----hCCCEEEEEc
Confidence            99999999887555544332     1356788887

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.54  E-value=8.5e-05  Score=57.49  Aligned_cols=48  Identities=27%  Similarity=0.248  Sum_probs=34.5

Q ss_pred             hHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           62 DLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        62 ~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      .||+-..  ..+|.++.|.|+||+||||++..++....      ..+.++.+++.+
T Consensus         3 ~~~~~~~--~~~~~~i~l~G~~GsGKsT~~~~L~~~l~------~~~~~~~~~~~d   50 (186)
T 2yvu_A            3 ALTTYKC--IEKGIVVWLTGLPGSGKTTIATRLADLLQ------KEGYRVEVLDGD   50 (186)
T ss_dssp             -----CC--CSCCEEEEEECCTTSSHHHHHHHHHHHHH------HTTCCEEEEEHH
T ss_pred             ccccccc--cCCCcEEEEEcCCCCCHHHHHHHHHHHHH------hcCCeEEEeeHH
Confidence            4555443  35789999999999999999999988764      246678888753

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.54  E-value=0.00068  Score=55.51  Aligned_cols=39  Identities=23%  Similarity=0.310  Sum_probs=29.9

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      ++.++.|+|+|||||||++..++....      ..+..+++++.+
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~------~~g~~~i~~~~D   41 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILS------KNNIDVIVLGSD   41 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH------HTTCCEEEECTH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHH------hCCCEEEEECch
Confidence            467899999999999999999988743      234556666643

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.54  E-value=0.00031  Score=61.93  Aligned_cols=40  Identities=25%  Similarity=0.362  Sum_probs=35.4

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL  118 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~  118 (226)
                      ++.++.++|++|+||||++..++....      ..+++|+.++...
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~------~~g~~Vllvd~D~  136 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYK------GKGRRPLLVAADT  136 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH------TTTCCEEEEECCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH------HcCCeEEEeeccc
Confidence            688999999999999999999998886      4678999999764

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=97.54  E-value=0.00027  Score=60.29  Aligned_cols=25  Identities=28%  Similarity=0.428  Sum_probs=22.3

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhc
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ..+.|+||+|+|||+++..++....
T Consensus        39 ~~~ll~G~~G~GKT~la~~la~~l~   63 (373)
T 1jr3_A           39 HAYLFSGTRGVGKTSIARLLAKGLN   63 (373)
T ss_dssp             SEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999988764

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=97.53  E-value=0.001  Score=56.34  Aligned_cols=37  Identities=30%  Similarity=0.399  Sum_probs=33.4

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      .++...|.+|+||||++.++|...+      ..+.+|+.||+.
T Consensus        15 ~i~v~sgKGGvGKTTvA~~LA~~lA------~~G~rVLlvD~D   51 (324)
T 3zq6_A           15 TFVFIGGKGGVGKTTISAATALWMA------RSGKKTLVISTD   51 (324)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHH------HTTCCEEEEECC
T ss_pred             EEEEEeCCCCchHHHHHHHHHHHHH------HCCCcEEEEeCC
Confidence            7889999999999999999999988      468899999954

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.53  E-value=0.00022  Score=68.15  Aligned_cols=71  Identities=21%  Similarity=0.154  Sum_probs=46.8

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCch---HH-H---------HHHHHHHHHHhhCCCc
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYT---EQ-S---------AVINYLDKFVSEHKDV  141 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~---~~-~---------~~l~~l~~~l~~~~~~  141 (226)
                      ..+.|+||||+|||+++..++....      +.+.+++++++..+...   .. +         .....+...+... ..
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~------~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~-~~  661 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLF------DTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRR-PY  661 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHH------SSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHC-SS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc------CCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhC-CC
Confidence            5789999999999999999998875      34678888885421100   00 0         0012344445544 56


Q ss_pred             eEEEEcCCchh
Q 036464          142 KVVIIDSIAFH  152 (226)
Q Consensus       142 ~lvVIDsl~~l  152 (226)
                      .+|+||++..+
T Consensus       662 ~vl~lDEi~~l  672 (854)
T 1qvr_A          662 SVILFDEIEKA  672 (854)
T ss_dssp             EEEEESSGGGS
T ss_pred             eEEEEeccccc
Confidence            89999999753

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}

Probab=97.51  E-value=0.0003  Score=63.02  Aligned_cols=57  Identities=26%  Similarity=0.366  Sum_probs=44.9

Q ss_pred             cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      ....++.||++.+|-++-  +-+|+-..|.|++|+|||++++....+..      +.+..|+|+-
T Consensus       154 ~v~epl~TGiraID~l~P--igrGQR~~I~g~~g~GKT~Lal~~I~~~~------~~dv~~V~~~  210 (515)
T 2r9v_A          154 PVDTPLQTGIKAIDSMIP--IGRGQRELIIGDRQTGKTAIAIDTIINQK------GQGVYCIYVA  210 (515)
T ss_dssp             CCCSEECCSCHHHHHHSC--EETTCBEEEEEETTSSHHHHHHHHHHTTT------TTTEEEEEEE
T ss_pred             CCCcchhcCccccccccc--cccCCEEEEEcCCCCCccHHHHHHHHHhh------cCCcEEEEEE
Confidence            346789999999999986  88899999999999999999876555544      2333556654

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=97.51  E-value=0.00023  Score=61.90  Aligned_cols=44  Identities=23%  Similarity=0.147  Sum_probs=39.9

Q ss_pred             CceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           54 ARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        54 ~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ..+.||+..+|-++-  +-+|+-..|.|++|+|||+|+.+++.++.
T Consensus       157 e~~~tGiraID~l~P--igrGQR~lIfg~~g~GKT~Ll~~Ia~~i~  200 (427)
T 3l0o_A          157 DPKIYSTRLIDLFAP--IGKGQRGMIVAPPKAGKTTILKEIANGIA  200 (427)
T ss_dssp             STTCHHHHHHHHHSC--CBTTCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             cchhccchhhhhccc--ccCCceEEEecCCCCChhHHHHHHHHHHh
Confidence            567899999999986  77899999999999999999999998764

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=97.51  E-value=0.00076  Score=56.81  Aligned_cols=73  Identities=15%  Similarity=0.086  Sum_probs=46.9

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-cCchHHHHHHHHHHHHHhhC---CCceEEEEcCC
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-GFYTEQSAVINYLDKFVSEH---KDVKVVIIDSI  149 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-~~~~~~~~~l~~l~~~l~~~---~~~~lvVIDsl  149 (226)
                      ...++++||||+|||+++..++..+..   +......+++++.+. ....++   +..+.+.+...   .+.+++|||+.
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~---~~~~~~d~~~l~~~~~~~~id~---ir~li~~~~~~p~~~~~kvviIdea   91 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPEYVEK---FPPKASDVLEIDPEGENIGIDD---IRTIKDFLNYSPELYTRKYVIVHDC   91 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHHHT---SCCCTTTEEEECCSSSCBCHHH---HHHHHHHHTSCCSSSSSEEEEETTG
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhCch---hhccCCCEEEEcCCcCCCCHHH---HHHHHHHHhhccccCCceEEEeccH
Confidence            468999999999999999999876421   111234677787542 112222   33344444332   25799999999


Q ss_pred             chh
Q 036464          150 AFH  152 (226)
Q Consensus       150 ~~l  152 (226)
                      ..+
T Consensus        92 d~l   94 (305)
T 2gno_A           92 ERM   94 (305)
T ss_dssp             GGB
T ss_pred             HHh
Confidence            865

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=97.50  E-value=0.00068  Score=61.08  Aligned_cols=44  Identities=16%  Similarity=0.204  Sum_probs=33.7

Q ss_pred             EEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          143 VVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       143 lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +||||+++.++..       ....+...+..|.+..+..|+.+|++.|--.
T Consensus       300 vlvIDE~~~ll~~-------~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~  343 (512)
T 2ius_A          300 VVLVDEFADLMMT-------VGKKVEELIARLAQKARAAGIHLVLATQRPS  343 (512)
T ss_dssp             EEEEETHHHHHHH-------HHHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred             EEEEeCHHHHHhh-------hhHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence            8999999987642       1234556777788888899999999988754

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.50  E-value=0.00036  Score=59.29  Aligned_cols=64  Identities=20%  Similarity=0.236  Sum_probs=42.0

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCchhh
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHF  153 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~  153 (226)
                      ..+.|+||||+||||++..++...-         .++.+.+++.......      +...+......++++||++..+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l~---------~~~~~~sg~~~~~~~~------l~~~~~~~~~~~v~~iDE~~~l~  115 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASELQ---------TNIHVTSGPVLVKQGD------MAAILTSLERGDVLFIDEIHRLN  115 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHT---------CCEEEEETTTCCSHHH------HHHHHHHCCTTCEEEEETGGGCC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhC---------CCEEEEechHhcCHHH------HHHHHHHccCCCEEEEcchhhcC
Confidence            5689999999999999999988763         2344555543222222      22223333356899999998654

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.49  E-value=7.3e-05  Score=57.83  Aligned_cols=29  Identities=21%  Similarity=0.347  Sum_probs=24.5

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      |..+|.++.|+||+|+|||||+..++...
T Consensus         1 ~~~~g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            1 GSHMRKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             --CCCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            45679999999999999999999988764

>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B

Probab=97.49  E-value=0.00022  Score=47.13  Aligned_cols=47  Identities=17%  Similarity=0.336  Sum_probs=40.1

Q ss_pred             CCCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhh----chHhHHHHHH
Q 036464            1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ   47 (226)
Q Consensus         1 ~~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----~~~~a~~l~~   47 (226)
                      +||++|.|+++..+.|+++||+|+.|++..+..||.+    +.++.-++.+
T Consensus         9 ~~Ie~L~LS~Ra~NcLkragI~Tv~dL~~~s~~dLlki~n~G~kSl~EI~~   59 (73)
T 1z3e_B            9 MTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMKVRNLGRKSLEEVKA   59 (73)
T ss_dssp             CBGGGSCCBHHHHHHHHHTTCCBHHHHHTSCHHHHHTSTTCCHHHHHHHHH
T ss_pred             CcHHHhCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHcCCCCHHHHHHHHH
Confidence            6899999999999999999999999999999999988    3444444433

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.45  E-value=0.00012  Score=57.40  Aligned_cols=40  Identities=20%  Similarity=0.160  Sum_probs=31.9

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      ++|.++.|.|++|+||||++..++....      ..+..++|++..
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~------~~G~~~~~~d~d   62 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQMLY------QKGKLCYILDGD   62 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEEHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH------hcCceEEEecCc
Confidence            6899999999999999999999988763      123445688754

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.45  E-value=0.00012  Score=56.20  Aligned_cols=40  Identities=18%  Similarity=0.121  Sum_probs=31.2

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      ++|.++.|+|++|+||||++..++....      ..+.++++++.+
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~------~~g~~~i~~d~~   42 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLV------CHGIPCYTLDGD   42 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHH------HTTCCEEEEEHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHh------hCCCcEEEECCh
Confidence            6799999999999999999999887652      134567777743

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.44  E-value=1.8e-05  Score=64.90  Aligned_cols=23  Identities=35%  Similarity=0.452  Sum_probs=21.0

Q ss_pred             EEEecCCCCChHHHHHHHHHHhc
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +.|+||||+|||+++..++....
T Consensus        47 vll~G~~GtGKT~la~~la~~~~   69 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAGEAH   69 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCcHHHHHHHHHHHhC
Confidence            78999999999999999998764

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.44  E-value=0.00041  Score=61.33  Aligned_cols=39  Identities=21%  Similarity=0.217  Sum_probs=34.4

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCC-CCeEEEEeccc
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGL-GGKAIYIGKCL  118 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~-~~~vlyi~~e~  118 (226)
                      ..++.++|++|+||||++.++|..+.      .. +.+|+.++...
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA~~l~------~~~G~kVllvd~D~  139 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLGKFLR------EKHKKKVLVVSADV  139 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHH------HTSCCCEEEEECCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH------HhcCCeEEEEecCC
Confidence            46889999999999999999999887      35 88999999764

>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*

Probab=97.43  E-value=0.00032  Score=62.84  Aligned_cols=56  Identities=21%  Similarity=0.302  Sum_probs=44.9

Q ss_pred             ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      ...++.||++.+|-++-  +-+|+-..|.|++|+|||++++....+..      +.+..++|+-
T Consensus       143 v~epl~TGiraID~l~P--igrGQR~~Ifg~~g~GKT~Lal~~I~~~~------~~dv~~V~~~  198 (507)
T 1fx0_A          143 VYEPLQTGLIAIDAMIP--VGRGQRELIIGDRQTGKTAVATDTILNQQ------GQNVICVYVA  198 (507)
T ss_dssp             CCSBCCCSCTTTTTTSC--CBTTCBCBEEESSSSSHHHHHHHHHHTCC------TTTCEEEEEE
T ss_pred             cCCcccccceecccccc--cccCCEEEEecCCCCCccHHHHHHHHHhh------cCCcEEEEEE
Confidence            45779999999999986  88899999999999999999876655554      3344567765

>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B

Probab=97.42  E-value=0.00018  Score=47.17  Aligned_cols=47  Identities=15%  Similarity=0.227  Sum_probs=39.3

Q ss_pred             CCCCC-CCHHHHHHHHhCCCccHHHHHhCChhHHhh----chHhHHHHHHHh
Q 036464            3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQEE   49 (226)
Q Consensus         3 ~~~l~-l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----~~~~a~~l~~~~   49 (226)
                      |..|+ +++.+..+|.++||+|++++..+++.+|..    .-..|.++....
T Consensus         9 l~~L~Gi~~~~~~kL~e~Gi~TvedlA~~~~~eL~~i~gise~kA~~ii~aA   60 (70)
T 1wcn_A            9 LLNLEGVDRDLAFKLAARGVCTLEDLAEQGIDDLADIEGLTDEKAGALIMAA   60 (70)
T ss_dssp             HHSSTTCCHHHHHHHHTTTCCSHHHHHTSCHHHHHTSSSCCHHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHHHHHccCCCHHHHHHHHHHH
Confidence            56777 999999999999999999999999999988    335566665544

>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...

Probab=97.40  E-value=0.00066  Score=60.89  Aligned_cols=47  Identities=23%  Similarity=0.289  Sum_probs=39.3

Q ss_pred             cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ....++.||++.+|-++-  +-+|+-..|.|++|+|||++++....+..
T Consensus       141 ~v~epl~TGiraID~l~P--igrGQR~~I~g~~g~GKT~Lal~~I~~q~  187 (510)
T 2ck3_A          141 SVREPMQTGIKAVDSLVP--IGRGQRELIIGDRQTGKTSIAIDTIINQK  187 (510)
T ss_dssp             CCCSBCCCSCHHHHHHSC--CBTTCBCEEEESTTSSHHHHHHHHHHHTH
T ss_pred             ccCccccccceeeccccc--cccCCEEEEecCCCCCchHHHHHHHHHHH
Confidence            345779999999999986  88999999999999999999775544443

>4a8j_A Elongator complex protein 4; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_A

Probab=97.40  E-value=5.3e-05  Score=65.08  Aligned_cols=37  Identities=27%  Similarity=0.327  Sum_probs=34.0

Q ss_pred             cCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHH
Q 036464           53 LARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGI   92 (226)
Q Consensus        53 ~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~   92 (226)
                      ...++||++.||.+|+ ||++.|.+++|.|+   |||.++.
T Consensus        18 ~~~~stG~~~lD~llghgGlp~g~~~li~e~---~~t~~~~   55 (361)
T 4a8j_A           18 QPTTSTGSADLDSILGHMGLPLGNSVLVEEQ---STTEFHS   55 (361)
T ss_dssp             CEEECCSCHHHHHHTTSSSEETTCEEEEEEC---SSCCTHH
T ss_pred             CeeeccCCccHHHHhccCCccCCcEEEEeCC---CCCcHHH
Confidence            5679999999999999 99999999999998   8988883

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.40  E-value=0.0004  Score=59.55  Aligned_cols=74  Identities=22%  Similarity=0.114  Sum_probs=44.3

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH--HHHHHHHHHHhhC------CCceEE
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS--AVINYLDKFVSEH------KDVKVV  144 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~--~~l~~l~~~l~~~------~~~~lv  144 (226)
                      ++.-++|+||||+|||++|..++...-         .+.+.++..........  .....+...+...      ....+|
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~---------~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl  120 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLD---------VPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIV  120 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTT---------CCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEE
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcC---------CCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEE
Confidence            456689999999999999999988752         45666664311100000  0012222332221      145799


Q ss_pred             EEcCCchhhhc
Q 036464          145 IIDSIAFHFRH  155 (226)
Q Consensus       145 VIDsl~~l~~~  155 (226)
                      +||++..+...
T Consensus       121 ~lDEid~l~~~  131 (363)
T 3hws_A          121 YIDQIDKISRK  131 (363)
T ss_dssp             EEECHHHHCCC
T ss_pred             EEeChhhhccc
Confidence            99999976543

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.40  E-value=9.3e-05  Score=58.50  Aligned_cols=28  Identities=18%  Similarity=0.270  Sum_probs=24.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.||+|+|||||+..++...
T Consensus        17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           17 AAVGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            7899999999999999999999888765

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.39  E-value=9.9e-05  Score=57.71  Aligned_cols=28  Identities=25%  Similarity=0.253  Sum_probs=24.4

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|.++.|.||+|+||||++..++...
T Consensus         4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            4 MNKANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            3579999999999999999999888763

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.38  E-value=0.00015  Score=55.31  Aligned_cols=28  Identities=21%  Similarity=0.207  Sum_probs=26.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.||+|+|||||+..++...
T Consensus        30 i~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999999999888776

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=97.38  E-value=0.0001  Score=58.70  Aligned_cols=38  Identities=18%  Similarity=0.300  Sum_probs=32.3

Q ss_pred             chhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           60 CADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        60 ~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +..|...+. |+|+...++|+||||+|||++|+.++..+
T Consensus        45 ~~~l~~~~~-~iPkkn~ili~GPPGtGKTt~a~ala~~l   82 (212)
T 1tue_A           45 LGALKSFLK-GTPKKNCLVFCGPANTGKSYFGMSFIHFI   82 (212)
T ss_dssp             HHHHHHHHH-TCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHh-cCCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            566666675 58888889999999999999999998876

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.36  E-value=0.00015  Score=55.97  Aligned_cols=29  Identities=31%  Similarity=0.489  Sum_probs=25.9

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      |.+.+.++.|+|+||+||||++..++...
T Consensus         1 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            1 GMQTPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             CCSCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            46778999999999999999999998765

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=97.35  E-value=0.0025  Score=54.59  Aligned_cols=41  Identities=22%  Similarity=0.299  Sum_probs=35.3

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      -+...++.+.|.+|+||||++.++|...+      ..+.+|+.||+.
T Consensus        23 ~~~~~i~v~sgKGGvGKTTvA~~LA~~lA------~~G~rVLlvD~D   63 (349)
T 3ug7_A           23 KDGTKYIMFGGKGGVGKTTMSAATGVYLA------EKGLKVVIVSTD   63 (349)
T ss_dssp             SCSCEEEEEECSSSTTHHHHHHHHHHHHH------HSSCCEEEEECC
T ss_pred             cCCCEEEEEeCCCCccHHHHHHHHHHHHH------HCCCeEEEEeCC
Confidence            45567888999999999999999999988      468899999954

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=97.35  E-value=0.00061  Score=57.23  Aligned_cols=39  Identities=15%  Similarity=0.123  Sum_probs=31.1

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      .+.-+.|+|+||+|||+++..++....      ..+.+.+++++.
T Consensus        24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~~------~~~~~~v~v~~~   62 (304)
T 1ojl_A           24 SDATVLIHGDSGTGKELVARALHACSA------RSDRPLVTLNCA   62 (304)
T ss_dssp             TTSCEEEESCTTSCHHHHHHHHHHHSS------CSSSCCCEEECS
T ss_pred             CCCcEEEECCCCchHHHHHHHHHHhCc------ccCCCeEEEeCC
Confidence            345689999999999999999988654      346678888854

>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1

Probab=97.34  E-value=0.00033  Score=46.90  Aligned_cols=37  Identities=19%  Similarity=0.373  Sum_probs=35.7

Q ss_pred             CCCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhh
Q 036464            1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR   37 (226)
Q Consensus         1 ~~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~   37 (226)
                      +||++|.|+.+..+.|+++||+|+.|++..+..||.+
T Consensus        16 ~~Ie~L~LS~Ra~NcLk~agI~Tv~dL~~~se~dLlk   52 (79)
T 3gfk_B           16 MTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMK   52 (79)
T ss_dssp             CBGGGSCCBHHHHHHHHHTTCCBHHHHTTCCHHHHTT
T ss_pred             CcHHHhCCCHHHHHHHHHhCCCCHHHHHhCCHHHHHH
Confidence            6899999999999999999999999999999999988

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.33  E-value=0.00014  Score=56.85  Aligned_cols=28  Identities=14%  Similarity=0.182  Sum_probs=24.5

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|.++.|+|++||||||++..++...
T Consensus         3 i~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            3 NEKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             -CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            5689999999999999999999887765

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.33  E-value=0.00066  Score=57.96  Aligned_cols=39  Identities=28%  Similarity=0.351  Sum_probs=30.6

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      +.+|.++.|.|+||+|||||+..++....      ..++++.++.
T Consensus        52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~------~~~g~v~i~~   90 (337)
T 2qm8_A           52 TGRAIRVGITGVPGVGKSTTIDALGSLLT------AAGHKVAVLA   90 (337)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHHH------HTTCCEEEEE
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHhhh------hCCCEEEEEE
Confidence            67899999999999999999998886653      1345565554

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.30  E-value=0.00017  Score=56.92  Aligned_cols=29  Identities=31%  Similarity=0.528  Sum_probs=25.9

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      .++|.++.|.||+|+|||||+..++....
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            57899999999999999999998887763

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.29  E-value=0.00036  Score=54.80  Aligned_cols=41  Identities=27%  Similarity=0.229  Sum_probs=32.6

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      .++|.++.|+|++|+||||++..++....      ..++.+.+++..
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~------~~~~~v~~~~~d   59 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR------EQGISVCVFHMD   59 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHH------HTTCCEEEEEGG
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHh------hcCCeEEEeccC
Confidence            57789999999999999999998887653      235667777543

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.29  E-value=0.00014  Score=58.11  Aligned_cols=28  Identities=25%  Similarity=0.205  Sum_probs=24.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|+||+|+|||||+..++...
T Consensus        20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           20 MNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            7889999999999999999999888754

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.28  E-value=0.00076  Score=59.21  Aligned_cols=63  Identities=19%  Similarity=0.153  Sum_probs=40.6

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCc
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIA  150 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~  150 (226)
                      +...++.|+|+|||||||++..++...           +..+++......  .......+...+...   ..+|||...
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~-----------~~~~i~~D~~~~--~~~~~~~~~~~l~~g---~~vIiD~~~  318 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSA-----------GYVHVNRDTLGS--WQRCVSSCQAALRQG---KRVVIDNTN  318 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGG-----------TCEECCGGGSCS--HHHHHHHHHHHHHTT---CCEEEESCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc-----------CcEEEccchHHH--HHHHHHHHHHHHhcC---CcEEEeCCC
Confidence            346899999999999999999887654           245666543221  112334455555542   347788764

>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D

Probab=97.27  E-value=0.00052  Score=46.66  Aligned_cols=47  Identities=9%  Similarity=0.172  Sum_probs=40.3

Q ss_pred             CCCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhh----chHhHHHHHH
Q 036464            1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ   47 (226)
Q Consensus         1 ~~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----~~~~a~~l~~   47 (226)
                      +||++|.|+.+..+.|+++||+|+.|++..+..||.+    +.++..++.+
T Consensus        12 ~~I~~L~LSvRa~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~   62 (86)
T 3k4g_A           12 RPVDDLELTVRSANCLXAEAIHYIGDLVQRTEVELLXTPNLGXXSLTEIXD   62 (86)
T ss_dssp             SBGGGGCCCHHHHHHHHHTTCCBHHHHHHSCHHHHHTSTTCCHHHHHHHHH
T ss_pred             CcHHHhCCCHHHHHHHHHcCCCcHHHHHhCCHHHHhhccccCcccHHHHHH
Confidence            5899999999999999999999999999999999988    4445545443

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.26  E-value=0.0021  Score=60.49  Aligned_cols=67  Identities=22%  Similarity=0.271  Sum_probs=44.6

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC--------------chHHHHHHHHHHHHHhhCCC
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF--------------YTEQSAVINYLDKFVSEHKD  140 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~--------------~~~~~~~l~~l~~~l~~~~~  140 (226)
                      ..+.|+||||+|||+++..++...         +.++++++...+.              +.. ......+...+... .
T Consensus       489 ~~~ll~G~~GtGKT~la~~la~~l---------~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g-~~~~~~l~~~~~~~-~  557 (758)
T 1r6b_X          489 GSFLFAGPTGVGKTEVTVQLSKAL---------GIELLRFDMSEYMERHTVSRLIGAPPGYVG-FDQGGLLTDAVIKH-P  557 (758)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH---------TCEEEEEEGGGCSSSSCCSSSCCCCSCSHH-HHHTTHHHHHHHHC-S
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHh---------cCCEEEEechhhcchhhHhhhcCCCCCCcC-ccccchHHHHHHhC-C
Confidence            468999999999999999998875         2467788754210              111 01112344555554 5


Q ss_pred             ceEEEEcCCchh
Q 036464          141 VKVVIIDSIAFH  152 (226)
Q Consensus       141 ~~lvVIDsl~~l  152 (226)
                      ..+|+||++..+
T Consensus       558 ~~vl~lDEi~~~  569 (758)
T 1r6b_X          558 HAVLLLDEIEKA  569 (758)
T ss_dssp             SEEEEEETGGGS
T ss_pred             CcEEEEeCcccc
Confidence            799999999853

>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}

Probab=97.26  E-value=0.00069  Score=45.86  Aligned_cols=43  Identities=14%  Similarity=0.183  Sum_probs=36.8

Q ss_pred             CCCCC-CCHHHHHHHHhCCCccHHHHHhCChhHHhh----chHhHHHH
Q 036464            3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDM   45 (226)
Q Consensus         3 ~~~l~-l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----~~~~a~~l   45 (226)
                      ++.+| |++..+++|+++|++|+.|++..++.+|.+    .+.++.++
T Consensus         6 ~~~~p~Lse~~~~~L~~~~I~Tv~Dfl~~d~~eL~~~~~ls~~~v~~l   53 (83)
T 2kz3_A            6 VGLCPGLTEEMIQLLRSHRIKTVVDLVSADLEEVAQKCGLSYKALVAL   53 (83)
T ss_dssp             TTSSTTCCHHHHHHHHHTTCCCHHHHTTSCHHHHHHHHTCCHHHHHHH
T ss_pred             cccCCCCCHHHHHHHHHCCCCCHHHHHhCCHHHHHHHhCCCHHHHHHH
Confidence            46667 999999999999999999999999999998    45555444

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=97.26  E-value=0.00046  Score=63.18  Aligned_cols=37  Identities=22%  Similarity=0.258  Sum_probs=30.7

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK  116 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~  116 (226)
                      +.++.|.|+||+|||+++..++....      ..+.+|++...
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l~------~~g~~Vl~~Ap  240 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLAE------SLGLEVGLCAP  240 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHH------HTTCCEEEEES
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHH------hcCCeEEEecC
Confidence            57899999999999999999887765      35678887763

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=97.25  E-value=0.00028  Score=58.67  Aligned_cols=70  Identities=19%  Similarity=0.187  Sum_probs=41.7

Q ss_pred             EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhh----CCCceEEEEcCCchh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSE----HKDVKVVIIDSIAFH  152 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~----~~~~~lvVIDsl~~l  152 (226)
                      +.|+||||+|||+++..++..+.-+    +....+++++.......+.+  .+.+..+...    ..+.++||||++..+
T Consensus        41 ~ll~G~~G~GKt~la~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~vliiDe~~~l  114 (319)
T 2chq_A           41 LLFSGPPGTGKTATAIALARDLFGE----NWRDNFIEMNASDERGIDVV--RHKIKEFARTAPIGGAPFKIIFLDEADAL  114 (319)
T ss_dssp             EEEESSSSSSHHHHHHHHHHHHHTT----CHHHHCEEEETTSTTCTTTS--SHHHHHHHHSCCSSSCCCEEEEEETGGGS
T ss_pred             EEEECcCCcCHHHHHHHHHHHhcCC----cccCCeEEEeCccccChHHH--HHHHHHHHhcCCCCCCCceEEEEeCCCcC
Confidence            8999999999999999999886310    11234666764321111111  1112222211    135789999999864

>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*

Probab=97.24  E-value=0.00081  Score=59.57  Aligned_cols=47  Identities=15%  Similarity=0.113  Sum_probs=42.0

Q ss_pred             cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      .....+.||++.+|-++-  +-+|+-..|.|++|+|||+|+.+++....
T Consensus       126 ~~~e~l~TGiraID~l~p--igrGQr~~Ifgg~G~GKt~L~~~Ia~~~~  172 (464)
T 3gqb_B          126 KPEQFIQTGISTIDVMNT--LVRGQKLPIFSGSGLPANEIAAQIARQAT  172 (464)
T ss_dssp             CCCCBCBCSCHHHHTTSC--CBTTCBCCEEEETTSCHHHHHHHHHHHCB
T ss_pred             CccccccCcceeeecccc--cccCCEEEEecCCCCCchHHHHHHHHHHH
Confidence            446789999999999986  78899999999999999999999988764

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=97.24  E-value=0.0035  Score=57.13  Aligned_cols=46  Identities=13%  Similarity=0.171  Sum_probs=34.2

Q ss_pred             ceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          141 VKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       141 ~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +-+||||++..++...  .     ..+...+..|.+..+.+|+.+|++.|--.
T Consensus       344 ~ivvVIDE~~~L~~~~--~-----~~~~~~L~~Iar~GRa~GIhLIlaTQRPs  389 (574)
T 2iut_A          344 TIVVVVDEFADMMMIV--G-----KKVEELIARIAQKARAAGIHLILATQRPS  389 (574)
T ss_dssp             EEEEEESCCTTHHHHT--C-----HHHHHHHHHHHHHCTTTTEEEEEEESCCC
T ss_pred             cEEEEEeCHHHHhhhh--h-----HHHHHHHHHHHHHHhhCCeEEEEEecCcc
Confidence            3589999999876532  1     23445667788888899999999998754

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.23  E-value=0.00021  Score=56.00  Aligned_cols=27  Identities=26%  Similarity=0.271  Sum_probs=24.0

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ++|.++.|.|+||+||||++..++...
T Consensus        27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           27 EPTRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            679999999999999999999988764

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=97.23  E-value=0.0017  Score=55.45  Aligned_cols=48  Identities=23%  Similarity=0.348  Sum_probs=38.3

Q ss_pred             hHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           62 DLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        62 ~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      .|+.++..  +.-.++.+.|..|+||||++.++|...+      ..+.+|+.||+.
T Consensus         6 ~l~~~l~~--~~~~i~~~sgkGGvGKTt~a~~lA~~la------~~g~~vllid~D   53 (334)
T 3iqw_A            6 TLQSILDQ--RSLRWIFVGGKGGVGKTTTSCSLAIQLA------KVRRSVLLLSTD   53 (334)
T ss_dssp             SSHHHHHC--TTCCEEEEECSTTSSHHHHHHHHHHHHT------TSSSCEEEEECC
T ss_pred             cHHHHhcC--CCeEEEEEeCCCCccHHHHHHHHHHHHH------hCCCcEEEEECC
Confidence            34555543  2346889999999999999999999988      578899999954

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.22  E-value=0.00021  Score=57.37  Aligned_cols=29  Identities=17%  Similarity=0.148  Sum_probs=24.0

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -.++|+++.|.||+|+|||||+..++...
T Consensus        12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~   40 (219)
T 1s96_A           12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQ   40 (219)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            47899999999999999999999887764

>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A

Probab=97.22  E-value=0.01  Score=53.09  Aligned_cols=57  Identities=28%  Similarity=0.355  Sum_probs=45.6

Q ss_pred             cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      ....++.||++.+|.++-  +-+|+-..|.|++|+|||+++++...+..      ..+..|+|+-
T Consensus       141 ~v~epl~TGikaID~l~P--igrGQR~~Ifg~~g~GKT~l~l~~I~n~~------~~dv~~V~~~  197 (513)
T 3oaa_A          141 SVDQPVQTGYKAVDSMIP--IGRGQRELIIGDRQTGKTALAIDAIINQR------DSGIKCIYVA  197 (513)
T ss_dssp             CCCCBCCCSCHHHHHHSC--CBTTCBCEEEESSSSSHHHHHHHHHHTTS------SSSCEEEEEE
T ss_pred             CcCcccccceeeeccccc--cccCCEEEeecCCCCCcchHHHHHHHhhc------cCCceEEEEE
Confidence            346889999999999986  78899999999999999999876655543      3444567765

>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B

Probab=97.21  E-value=0.0085  Score=53.63  Aligned_cols=57  Identities=25%  Similarity=0.342  Sum_probs=45.2

Q ss_pred             cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      ....++.||++.+|-++-  +-+|+-..|.|++|+|||++++....+..      +.+..++|+-
T Consensus       141 ~v~epl~TGiraID~l~P--igrGQR~~Ifg~~g~GKT~Lal~~I~~~~------~~dv~~V~~~  197 (502)
T 2qe7_A          141 SVHEPLQTGIKAIDSMIP--IGRGQRELIIGDRQTGKTTIAIDTIINQK------GQDVICIYVA  197 (502)
T ss_dssp             CCCSBCCCSCHHHHHSSC--CBTTCBCEEEECSSSCHHHHHHHHHHGGG------SCSEEEEEEE
T ss_pred             CCCCccccceeecccccc--cccCCEEEEECCCCCCchHHHHHHHHHhh------cCCcEEEEEE
Confidence            346789999999999986  88999999999999999999876555554      3344566665

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=97.21  E-value=0.0052  Score=54.71  Aligned_cols=46  Identities=24%  Similarity=0.194  Sum_probs=42.4

Q ss_pred             ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ....+.||++.+|-++-  +-+|+-..|.|++|+|||+|+.+++.+.+
T Consensus       133 ~~e~l~TGir~ID~l~p--igkGQr~~Ifgg~G~GKT~L~~~i~~~~~  178 (482)
T 2ck3_D          133 EQEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVA  178 (482)
T ss_dssp             CCCEECCSCHHHHHHSC--EETTCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cCcCCccceEEEecccc--cccCCeeeeecCCCCChHHHHHHHHHhhH
Confidence            46789999999999986  88899999999999999999999999975

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.20  E-value=0.00023  Score=56.31  Aligned_cols=27  Identities=15%  Similarity=0.192  Sum_probs=24.6

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ++|.++.|+||+|+||||++..++...
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~   32 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDP   32 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHST
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            579999999999999999999988765

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.20  E-value=0.00025  Score=55.60  Aligned_cols=28  Identities=29%  Similarity=0.301  Sum_probs=24.4

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|.++.|.|+||+||||++..++...
T Consensus        22 ~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           22 SNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            5788999999999999999999999776

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.18  E-value=0.00021  Score=56.15  Aligned_cols=27  Identities=22%  Similarity=0.223  Sum_probs=22.1

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ++|.++.|+||+|+|||||+..++...
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            578999999999999999999888754

>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*

Probab=97.17  E-value=0.0015  Score=55.54  Aligned_cols=77  Identities=16%  Similarity=0.111  Sum_probs=51.9

Q ss_pred             CCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEec
Q 036464            2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGG   81 (226)
Q Consensus         2 ~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G   81 (226)
                      ++++++|++.+++.|.+.||.+...        .++   .                    .++.++.|   .+.-+.+.+
T Consensus         6 ~f~~~~l~~~l~~~l~~~~~~~~~~--------~Q~---~--------------------~i~~~~~~---~~~~~lv~a   51 (395)
T 3pey_A            6 SFDELGLAPELLKGIYAMKFQKPSK--------IQE---R--------------------ALPLLLHN---PPRNMIAQS   51 (395)
T ss_dssp             SSTTSCCCHHHHHHHHHTTCCSCCH--------HHH---H--------------------HHHHHHCS---SCCCEEEEC
T ss_pred             CHhhCCCCHHHHHHHHHCCCCCCCH--------HHH---H--------------------HHHHHHcC---CCCeEEEEC
Confidence            5688999999999999999875222        211   1                    12333433   346689999


Q ss_pred             CCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           82 VPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        82 ~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      |+|+|||..+...+......   ...+.+++|+.
T Consensus        52 ~TGsGKT~~~~~~~~~~~~~---~~~~~~~lil~   82 (395)
T 3pey_A           52 QSGTGKTAAFSLTMLTRVNP---EDASPQAICLA   82 (395)
T ss_dssp             CTTSCHHHHHHHHHHHHCCT---TCCSCCEEEEC
T ss_pred             CCCCcHHHHHHHHHHHHhcc---CCCCccEEEEC
Confidence            99999998777666655421   12456788886

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.17  E-value=0.00027  Score=59.63  Aligned_cols=29  Identities=28%  Similarity=0.310  Sum_probs=26.7

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .+++|+++.|+||+|+|||||+.-++.-.
T Consensus       122 ~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          122 GIPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             TCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            59999999999999999999999888764

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=97.16  E-value=0.0006  Score=60.96  Aligned_cols=46  Identities=22%  Similarity=0.201  Sum_probs=42.3

Q ss_pred             ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ....+.||++.+|-++-  +-+|.-..|.|++|+|||+|+.+++.+++
T Consensus       145 ~~e~l~TGirvID~l~p--igkGqr~gIfgg~GvGKT~L~~~l~~~~a  190 (498)
T 1fx0_B          145 KLSIFETGIKVVNLLAP--YRRGGKIGLFGGAGVGKTVLIMELINNIA  190 (498)
T ss_dssp             CCCCCCCSCTTHHHHSC--CCTTCCEEEEECSSSSHHHHHHHHHHHTT
T ss_pred             cccccccceeEeeeecc--cccCCeEEeecCCCCCchHHHHHHHHHHH
Confidence            36789999999999986  88999999999999999999999999875

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.13  E-value=0.00037  Score=53.17  Aligned_cols=27  Identities=22%  Similarity=0.349  Sum_probs=23.8

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .+|.++.|+|+||+||||++..++...
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence            468999999999999999999888654

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.11  E-value=0.0011  Score=51.56  Aligned_cols=71  Identities=15%  Similarity=0.024  Sum_probs=44.6

Q ss_pred             eEEEe-cCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHH------------HHHHHHHHhh-CCCc
Q 036464           76 VTEIG-GVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAV------------INYLDKFVSE-HKDV  141 (226)
Q Consensus        76 i~~i~-G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~------------l~~l~~~l~~-~~~~  141 (226)
                      ++.++ +..|+||||++.++|...+      ..+.+|++||............            -..+.+.+.. ...+
T Consensus         3 vi~v~s~kgG~GKTt~a~~la~~la------~~g~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~y   76 (206)
T 4dzz_A            3 VISFLNPKGGSGKTTAVINIATALS------RSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADY   76 (206)
T ss_dssp             EEEECCSSTTSSHHHHHHHHHHHHH------HTTCCEEEEECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTS
T ss_pred             EEEEEeCCCCccHHHHHHHHHHHHH------HCCCeEEEEECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCC
Confidence            34444 7789999999999999987      4788999999752111110000            0222223322 1258


Q ss_pred             eEEEEcCCchh
Q 036464          142 KVVIIDSIAFH  152 (226)
Q Consensus       142 ~lvVIDsl~~l  152 (226)
                      ++||||....+
T Consensus        77 D~viiD~~~~~   87 (206)
T 4dzz_A           77 DFAIVDGAGSL   87 (206)
T ss_dssp             SEEEEECCSSS
T ss_pred             CEEEEECCCCC
Confidence            99999998643

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.10  E-value=0.00037  Score=56.49  Aligned_cols=29  Identities=10%  Similarity=0.021  Sum_probs=24.7

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|.++.|.||+|+||||++..++...
T Consensus        21 ~i~~g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           21 QSMRPFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             --CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999999999887754

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.10  E-value=0.00056  Score=57.06  Aligned_cols=36  Identities=33%  Similarity=0.476  Sum_probs=28.7

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK  116 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~  116 (226)
                      ..+.++.|+|+||+||||++..++....         ...++||.
T Consensus        31 ~~~~livl~G~sGsGKSTla~~L~~~~~---------~~~~~Is~   66 (287)
T 1gvn_B           31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ---------GNVIVIDN   66 (287)
T ss_dssp             SSCEEEEEECCTTSCTHHHHHHHHHHTT---------TCCEEECT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC---------CCeEEEec
Confidence            4578999999999999999999987641         24567765

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.09  E-value=0.00036  Score=54.89  Aligned_cols=27  Identities=33%  Similarity=0.259  Sum_probs=23.8

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ++|.++.|.|++||||||++..++...
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~   30 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTL   30 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHh
Confidence            578999999999999999999888764

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.09  E-value=0.0012  Score=62.19  Aligned_cols=111  Identities=15%  Similarity=0.095  Sum_probs=60.2

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhcc---ccccCCCCCeEEEEecccc----Cch-HHHHHHHHHHHHHhhCCCceE
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQI---PVEFGGLGGKAIYIGKCLG----FYT-EQSAVINYLDKFVSEHKDVKV  143 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~l---p~~~~~~~~~vlyi~~e~~----~~~-~~~~~l~~l~~~l~~~~~~~l  143 (226)
                      ..+.-++|+||||+|||+++..++..+.-   |..  -.+..++.++....    .+. +....+..+.+.+... +..+
T Consensus       205 ~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~--~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~-~~~i  281 (758)
T 1r6b_X          205 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEV--MADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQD-TNSI  281 (758)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGG--GTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSS-SCEE
T ss_pred             cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChh--hcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHHhc-CCeE
Confidence            35667899999999999999999887631   111  02334444442210    111 1111233333333333 4689


Q ss_pred             EEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecc
Q 036464          144 VIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNL  190 (226)
Q Consensus       144 vVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq  190 (226)
                      ++||++..+......... .    ....+.|+.+..+.++.+|.+..
T Consensus       282 L~IDEi~~l~~~~~~~~~-~----~~~~~~L~~~l~~~~~~~I~at~  323 (758)
T 1r6b_X          282 LFIDEIHTIIGAGAASGG-Q----VDAANLIKPLLSSGKIRVIGSTT  323 (758)
T ss_dssp             EEETTTTTTTTSCCSSSC-H----HHHHHHHSSCSSSCCCEEEEEEC
T ss_pred             EEEechHHHhhcCCCCcc-h----HHHHHHHHHHHhCCCeEEEEEeC
Confidence            999999987643221100 1    12334555555566677766544

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.09  E-value=0.00057  Score=52.54  Aligned_cols=35  Identities=20%  Similarity=0.395  Sum_probs=28.3

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      .++.|.|+||+||||++..++....      ..+..+.+++
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~------~~g~~~~~~~   36 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILD------NQGINNKIIN   36 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH------TTTCCEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH------hcCceEEEEE
Confidence            3689999999999999999988764      3455677776

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.07  E-value=0.00017  Score=57.85  Aligned_cols=28  Identities=18%  Similarity=0.197  Sum_probs=19.6

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHH-HHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLA-VNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la-~~~   98 (226)
                      +++|.++.|+||+|+||||++..++ ...
T Consensus        24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           24 KSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             EECCCEEEEECSCC----CHHHHHHC---
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            6789999999999999999999888 543

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.03  E-value=0.00014  Score=57.90  Aligned_cols=27  Identities=33%  Similarity=0.320  Sum_probs=24.6

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      +++|+++.|.||+|+|||||+..++..
T Consensus        19 i~~Ge~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           19 IDTNTIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             HHHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHhcC
Confidence            588999999999999999999888765

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.03  E-value=0.00042  Score=54.49  Aligned_cols=28  Identities=18%  Similarity=0.205  Sum_probs=25.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ..+|.++.|+|+||+||||++..++...
T Consensus         9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A            9 MARIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            5678999999999999999999998765

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.03  E-value=0.00065  Score=52.19  Aligned_cols=25  Identities=32%  Similarity=0.496  Sum_probs=22.7

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHh
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      |.++.|.|+|||||||++..++...
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            5689999999999999999998865

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.02  E-value=0.00046  Score=52.65  Aligned_cols=25  Identities=16%  Similarity=0.167  Sum_probs=22.7

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHh
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.++.|+|+||+||||++..++...
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            5689999999999999999998865

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.02  E-value=0.00035  Score=54.00  Aligned_cols=23  Identities=30%  Similarity=0.475  Sum_probs=21.2

Q ss_pred             CeeEEEecCCCCChHHHHHHHHH
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAV   96 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~   96 (226)
                      |.++.|.|+||+||||++..++.
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhc
Confidence            67899999999999999999875

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=97.01  E-value=0.002  Score=58.57  Aligned_cols=52  Identities=19%  Similarity=0.282  Sum_probs=34.0

Q ss_pred             hHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhcc-ccccCCCCCeEEEEec
Q 036464           62 DLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI-PVEFGGLGGKAIYIGK  116 (226)
Q Consensus        62 ~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~l-p~~~~~~~~~vlyi~~  116 (226)
                      .|...+..+-....++.|+|++|+|||+|+.+++..... .   ......+.|++.
T Consensus       135 ~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~---~~f~~~v~wv~~  187 (591)
T 1z6t_A          135 AIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLE---GCFPGGVHWVSV  187 (591)
T ss_dssp             HHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHH---HHCTTCEEEEEE
T ss_pred             HHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHH---hhCCCceEEEEC
Confidence            355555432234679999999999999999998754210 0   012346888774

>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A

Probab=97.01  E-value=0.0019  Score=50.23  Aligned_cols=79  Identities=23%  Similarity=0.196  Sum_probs=50.9

Q ss_pred             CCCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEe
Q 036464            1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIG   80 (226)
Q Consensus         1 ~~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~   80 (226)
                      |..++|+|++.+++.|.+.||....+        .++   .+                    ++.++.|     .-+.+.
T Consensus         1 ~~f~~~~l~~~l~~~l~~~~~~~~~~--------~Q~---~~--------------------i~~~~~~-----~~~li~   44 (207)
T 2gxq_A            1 MEFKDFPLKPEILEALHGRGLTTPTP--------IQA---AA--------------------LPLALEG-----KDLIGQ   44 (207)
T ss_dssp             CCGGGSCCCHHHHHHHHHTTCCSCCH--------HHH---HH--------------------HHHHHTT-----CCEEEE
T ss_pred             CChhhcCCCHHHHHHHHHcCCCCCCH--------HHH---HH--------------------HHHHcCC-----CCEEEE
Confidence            56788999999999999999975332        211   11                    1223332     348899


Q ss_pred             cCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           81 GVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        81 G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      +|+|+|||..+...+..........+.+.+++|+.
T Consensus        45 ~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~   79 (207)
T 2gxq_A           45 ARTGTGKTLAFALPIAERLAPSQERGRKPRALVLT   79 (207)
T ss_dssp             CCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEEC
T ss_pred             CCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEE
Confidence            99999999876555555442211113456788886

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.00  E-value=0.00047  Score=54.15  Aligned_cols=29  Identities=28%  Similarity=0.269  Sum_probs=25.4

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|.++.|+|++|+||||++..++...
T Consensus        17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            46789999999999999999998887653

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.99  E-value=0.00044  Score=52.47  Aligned_cols=26  Identities=31%  Similarity=0.379  Sum_probs=22.9

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .|.++.|+|+|||||||++..++...
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l   28 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQL   28 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            36789999999999999999888765

>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A

Probab=96.99  E-value=0.00016  Score=67.53  Aligned_cols=73  Identities=26%  Similarity=0.333  Sum_probs=46.9

Q ss_pred             CCCCCCC--CCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEE
Q 036464            1 MEVSKLP--ISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTE   78 (226)
Q Consensus         1 ~~~~~l~--l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~   78 (226)
                      |++++||  |++.+.+.|++.||.....+      +  +                       ..++.++     .|..+.
T Consensus         1 m~f~~l~~~l~~~~~~~l~~~g~~~l~~~------Q--~-----------------------~~i~~i~-----~~~~~l   44 (702)
T 2p6r_A            1 MKVEELAESISSYAVGILKEEGIEELFPP------Q--A-----------------------EAVEKVF-----SGKNLL   44 (702)
T ss_dssp             CCSHHHHHHHHHHHHHHHHCC---CCCCC------C--H-----------------------HHHHHHT-----TCSCEE
T ss_pred             CchhhhhhccCHHHHHHHHhCCCCCCCHH------H--H-----------------------HHHHHHh-----CCCcEE
Confidence            6788888  88888888888887542211      0  0                       1122222     256789


Q ss_pred             EecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           79 IGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        79 i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      +++|+|+|||+.+...+.....      .+.+++|+.
T Consensus        45 v~apTGsGKT~~~~l~il~~~~------~~~~~l~i~   75 (702)
T 2p6r_A           45 LAMPTAAGKTLLAEMAMVREAI------KGGKSLYVV   75 (702)
T ss_dssp             EECSSHHHHHHHHHHHHHHHHH------TTCCEEEEE
T ss_pred             EEcCCccHHHHHHHHHHHHHHH------hCCcEEEEe
Confidence            9999999999988766655432      356788887

>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*

Probab=96.98  E-value=0.012  Score=52.21  Aligned_cols=47  Identities=15%  Similarity=0.109  Sum_probs=41.7

Q ss_pred             cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      .....+.||++.+|-++-  +-+|+-..|.|++|+|||+|+.+++....
T Consensus       130 ~~~e~l~TGiraID~l~p--igrGQr~~Ifgg~G~GKt~L~~~Ia~~~~  176 (465)
T 3vr4_D          130 YPDEFIQTGISAIDHLNT--LVRGQKLPVFSGSGLPHKELAAQIARQAT  176 (465)
T ss_dssp             CCCCBCBCSCHHHHTTSC--CBTTCBCCEEECTTSCHHHHHHHHHHHCB
T ss_pred             CcccccccCceEEecccc--cccCCEEEEeCCCCcChHHHHHHHHHHHH
Confidence            346789999999999986  78899999999999999999999988764

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.97  E-value=0.00056  Score=57.81  Aligned_cols=43  Identities=9%  Similarity=-0.022  Sum_probs=32.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      +++|.++.|.|++|+|||||+..++.... | ..+  ..++.|+...
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~-~-~~G--~~~v~~v~qd  129 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLA-R-WDH--HPRVDLVTTD  129 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHH-T-STT--CCCEEEEEGG
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhcc-c-cCC--CCeEEEEecC
Confidence            68999999999999999999988877653 1 111  1457777643

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.96  E-value=0.001  Score=58.47  Aligned_cols=78  Identities=12%  Similarity=0.142  Sum_probs=50.6

Q ss_pred             hHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-C--------chHH--HHHHHH
Q 036464           62 DLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-F--------YTEQ--SAVINY  130 (226)
Q Consensus        62 ~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-~--------~~~~--~~~l~~  130 (226)
                      .|+.++   ..+|.++.|+||+|+||||++..++....      ...+.++++..... .        ....  ......
T Consensus       158 ~L~~l~---~~~ggii~I~GpnGSGKTTlL~allg~l~------~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~  228 (418)
T 1p9r_A          158 NFRRLI---KRPHGIILVTGPTGSGKSTTLYAGLQELN------SSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARG  228 (418)
T ss_dssp             HHHHHH---TSSSEEEEEECSTTSCHHHHHHHHHHHHC------CTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHH
T ss_pred             HHHHHH---HhcCCeEEEECCCCCCHHHHHHHHHhhcC------CCCCEEEEecccchhccCCcceEEEccccCcCHHHH
Confidence            355554   37899999999999999999998887764      23456777653321 0        0111  122345


Q ss_pred             HHHHHhhCCCceEEEEcCCc
Q 036464          131 LDKFVSEHKDVKVVIIDSIA  150 (226)
Q Consensus       131 l~~~l~~~~~~~lvVIDsl~  150 (226)
                      +...+.+  .++++++.++.
T Consensus       229 lr~~Lrq--~pd~i~vgEiR  246 (418)
T 1p9r_A          229 LRAILRQ--DPDVVMVGEIR  246 (418)
T ss_dssp             HHHHGGG--CCSEEEESCCC
T ss_pred             HHHHhcc--CCCeEEEcCcC
Confidence            5566665  57889888854

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.95  E-value=0.0011  Score=51.71  Aligned_cols=27  Identities=19%  Similarity=0.244  Sum_probs=24.0

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +|.++.|.|+|||||||++..++...-
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            367899999999999999999998764

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.94  E-value=0.00055  Score=52.58  Aligned_cols=26  Identities=27%  Similarity=0.358  Sum_probs=23.4

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +|.++.|.|+|||||||++..++...
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            57889999999999999999998764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.93  E-value=0.0022  Score=54.68  Aligned_cols=40  Identities=23%  Similarity=0.237  Sum_probs=31.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK  116 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~  116 (226)
                      ...+.++.|+|+||+||||++..++....      ..+++|..++.
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~------~~~~~v~v~~~   92 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLI------REGLKVAVIAV   92 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHH------HTTCCEEEEEE
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHHHHH------hcCCeEEEEee
Confidence            46788999999999999999999987764      23556666553

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=96.92  E-value=0.0039  Score=51.89  Aligned_cols=38  Identities=24%  Similarity=0.295  Sum_probs=31.0

Q ss_pred             CeeEEEec-CCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           74 REVTEIGG-VPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        74 G~i~~i~G-~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      ..++.|++ .+|+|||+++.++|..++      ..+.+|+.||..
T Consensus        92 ~kvI~vts~kgG~GKTtva~nLA~~lA------~~G~rVLLID~D  130 (286)
T 3la6_A           92 NNVLMMTGVSPSIGMTFVCANLAAVIS------QTNKRVLLIDCD  130 (286)
T ss_dssp             CCEEEEEESSSSSSHHHHHHHHHHHHH------TTTCCEEEEECC
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHH------hCCCCEEEEecc
Confidence            44555555 589999999999999988      578899999965

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.88  E-value=0.00049  Score=59.29  Aligned_cols=28  Identities=29%  Similarity=0.380  Sum_probs=25.0

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|+||+|+||||++..++..+
T Consensus       172 i~~G~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          172 VQLERVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             HHTTCCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             HhcCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            5789999999999999999998887654

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=96.87  E-value=0.00066  Score=58.92  Aligned_cols=29  Identities=24%  Similarity=0.115  Sum_probs=26.6

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ++++|.++.|.||||+|||||+..++...
T Consensus       165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          165 NIPKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            69999999999999999999999888654

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.86  E-value=0.00072  Score=51.01  Aligned_cols=23  Identities=13%  Similarity=0.148  Sum_probs=21.1

Q ss_pred             eEEEecCCCCChHHHHHHHHHHh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ++.|+|+||+||||++..++...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998775

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.86  E-value=0.00066  Score=51.63  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=20.3

Q ss_pred             eeEEEecCCCCChHHHHHHHHH
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAV   96 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~   96 (226)
                      .++.|.|+|||||||++..++.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4789999999999999999987

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=96.85  E-value=0.0043  Score=54.92  Aligned_cols=35  Identities=23%  Similarity=0.250  Sum_probs=27.8

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCC-eEEEEec
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGG-KAIYIGK  116 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~-~vlyi~~  116 (226)
                      .+.|.|+||+|||+++..++..+.      ..+. +++.+..
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l~------~~~~~~il~~a~   82 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEALI------STGETGIILAAP   82 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH------HTTCCCEEEEES
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHH------hcCCceEEEecC
Confidence            899999999999999999988875      2333 5666653

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.84  E-value=0.00093  Score=51.60  Aligned_cols=27  Identities=30%  Similarity=0.320  Sum_probs=24.3

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      .+++.++.|+|+|||||||++..++..
T Consensus         7 ~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            7 QPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            456889999999999999999999887

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.83  E-value=0.0076  Score=48.22  Aligned_cols=43  Identities=21%  Similarity=0.172  Sum_probs=27.5

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      ..|+.+.+.|++|+|||++....+........ ...+.++++..
T Consensus        74 ~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~-~~~~~~~l~~~  116 (235)
T 3llm_A           74 SQNSVVIIRGATGCGKTTQVPQFILDDFIQND-RAAECNIVVTQ  116 (235)
T ss_dssp             HHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT-CGGGCEEEEEE
T ss_pred             hcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC-CCCceEEEEec
Confidence            34789999999999999877666554332100 01123677765

>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A

Probab=96.83  E-value=0.0011  Score=46.24  Aligned_cols=47  Identities=9%  Similarity=0.212  Sum_probs=39.9

Q ss_pred             CCCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhh----chHhHHHHHH
Q 036464            1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ   47 (226)
Q Consensus         1 ~~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----~~~~a~~l~~   47 (226)
                      +||++|.|+.+..+.|+++||+|+.|++..+..+|.+    +.++.-++.+
T Consensus        24 ~~Ie~L~LSvRs~NcLkragI~Tv~dL~~~se~dLlki~n~G~KSl~EI~~   74 (98)
T 1coo_A           24 RPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLTEIKD   74 (98)
T ss_dssp             SBGGGGTCCTTTHHHHHTTTCCBHHHHHTSCHHHHTTSTTCCHHHHHHHHH
T ss_pred             CcHHHhCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHhcCCCCHHHHHHHHH
Confidence            6899999999999999999999999999999999988    3344444433

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}

Probab=96.81  E-value=0.0022  Score=55.52  Aligned_cols=36  Identities=19%  Similarity=0.339  Sum_probs=32.1

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK  116 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~  116 (226)
                      .++.+.|..|+||||++.++|...+      ..+.+|+.||+
T Consensus         3 ~i~~~~gkGG~GKTt~a~~la~~la------~~g~~vllvd~   38 (374)
T 3igf_A            3 LILTFLGKSGVARTKIAIAAAKLLA------SQGKRVLLAGL   38 (374)
T ss_dssp             EEEEEECSBHHHHHHHHHHHHHHHH------HTTCCEEEEEC
T ss_pred             EEEEEeCCCCCcHHHHHHHHHHHHH------HCCCCeEEEeC
Confidence            4778999999999999999999987      47889999996

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.81  E-value=0.0016  Score=54.76  Aligned_cols=41  Identities=17%  Similarity=0.161  Sum_probs=30.5

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhcc-ccccCCCCCeEEEEec
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQI-PVEFGGLGGKAIYIGK  116 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~l-p~~~~~~~~~vlyi~~  116 (226)
                      ..+|.++.|+|++|+|||||+..++..... |     ..+.+.+++.
T Consensus        77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~-----~~G~i~vi~~  118 (308)
T 1sq5_A           77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWP-----EHRRVELITT  118 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHHHHTTST-----TCCCEEEEEG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCC-----CCCeEEEEec
Confidence            378899999999999999999888775420 1     2345666654

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.80  E-value=0.00089  Score=52.88  Aligned_cols=27  Identities=19%  Similarity=0.320  Sum_probs=24.3

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .+|.++.|+||+|+|||||+..++...
T Consensus        17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           17 QGRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            468999999999999999999998764

>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*

Probab=96.79  E-value=0.0023  Score=58.15  Aligned_cols=46  Identities=20%  Similarity=0.163  Sum_probs=41.5

Q ss_pred             cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .....+.||++.+|-++-  +-+|.-..|.|++|+|||+++.+++.+.
T Consensus       211 ~~~epl~TGirvID~l~P--igrGqr~~Ifgg~g~GKT~L~~~ia~~~  256 (600)
T 3vr4_A          211 NPDVPMITGQRVIDTFFP--VTKGGAAAVPGPFGAGKTVVQHQIAKWS  256 (600)
T ss_dssp             CCCSBCCCCCHHHHHHSC--CBTTCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCCceecccchhhhccCC--ccCCCEEeeecCCCccHHHHHHHHHhcc
Confidence            346889999999999986  8899999999999999999999998874

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.79  E-value=0.0011  Score=52.31  Aligned_cols=42  Identities=14%  Similarity=0.069  Sum_probs=32.3

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      +++|.++.|.|++|+||||++..++.....     ..+.++++++.+
T Consensus        22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~-----~~g~~~~~~~~d   63 (211)
T 1m7g_A           22 NQRGLTIWLTGLSASGKSTLAVELEHQLVR-----DRRVHAYRLDGD   63 (211)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHH-----HHCCCEEEECHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHhcc-----ccCCcEEEECCh
Confidence            578999999999999999999998876520     123457888743

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.78  E-value=0.00097  Score=51.27  Aligned_cols=25  Identities=24%  Similarity=0.238  Sum_probs=22.4

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHh
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.++.|.|+|||||||++..++...
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999988765

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.77  E-value=0.0011  Score=53.03  Aligned_cols=31  Identities=23%  Similarity=0.227  Sum_probs=27.3

Q ss_pred             CCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      .-++...++.|.|||||||+|.|..++..+-
T Consensus        24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g   54 (217)
T 3umf_A           24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH   54 (217)
T ss_dssp             CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred             hhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            4567888999999999999999999998874

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.76  E-value=0.001  Score=51.06  Aligned_cols=25  Identities=36%  Similarity=0.345  Sum_probs=22.6

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHh
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.++.|+|+|||||||++..++...
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            5678999999999999999998875

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.76  E-value=0.0011  Score=51.28  Aligned_cols=27  Identities=19%  Similarity=0.198  Sum_probs=23.8

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .++.++.|.|+|||||||++..++...
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            356789999999999999999998765

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.76  E-value=0.0011  Score=50.84  Aligned_cols=27  Identities=37%  Similarity=0.495  Sum_probs=23.8

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ..+.++.|+|+||+||||++..++...
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999998775

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=96.73  E-value=0.0017  Score=53.68  Aligned_cols=89  Identities=17%  Similarity=0.099  Sum_probs=53.8

Q ss_pred             HHHHHHHHhCCCccHHHHHhCChhHHhh---------chHhHHHHHHHhh----------cccCceecC-----------
Q 036464           10 ATQRGKLISAGYTSLSSICSASSSDISR---------GTQTAWDMLQEEQ----------ESLARITTS-----------   59 (226)
Q Consensus        10 ~~~~~~l~~~g~~t~~~~~~~~~~~l~~---------~~~~a~~l~~~~~----------~~~~~i~Tg-----------   59 (226)
                      ..+++-+.++|+.+-.++..+++..-..         ..+.++++.....          ........|           
T Consensus         2 ~~mVqw~~d~~i~~e~~~~~~~~d~~~a~l~~~~~~~~vk~~~~m~r~~~~~~~s~~~~i~~~~~~~~~~~n~i~~~l~~   81 (267)
T 1u0j_A            2 MELVGWLVDKGITSEKQWIQEDQASYISFNAASNSRSQIKAALDNAGKIMSLTKTAPDYLVGQQPVEDISSNRIYKILEL   81 (267)
T ss_dssp             HHHHHHHHHHTCCSHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHCCHHHHHSCSSCCSCGGGCHHHHHHHH
T ss_pred             hHHHHHHHHcCCCCHHHHHhcCHHHHHHHhhcccchhHHHHHHHHHHHHHHccCCHHHHhcccCCCCCCchHHHHHHHHH
Confidence            4678889999999999988655542221         2233443322210          000111111           


Q ss_pred             --------chhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           60 --------CADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        60 --------~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                              ..-|...+.|..++..-+.|+||||+|||.|+..++..+
T Consensus        82 qg~~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~  128 (267)
T 1u0j_A           82 NGYDPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             TTCCHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cCCCHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh
Confidence                    011333445554767789999999999999999998875

>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A

Probab=96.73  E-value=0.006  Score=48.92  Aligned_cols=78  Identities=14%  Similarity=0.001  Sum_probs=46.3

Q ss_pred             CCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEec
Q 036464            2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGG   81 (226)
Q Consensus         2 ~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G   81 (226)
                      .+++++|++.+.+.|.+.||.....        .++   .|                    ++.++.     |.-+.+.+
T Consensus        30 ~f~~~~l~~~l~~~l~~~g~~~~~~--------~Q~---~~--------------------i~~~~~-----g~~~l~~a   73 (242)
T 3fe2_A           30 NFYEANFPANVMDVIARQNFTEPTA--------IQA---QG--------------------WPVALS-----GLDMVGVA   73 (242)
T ss_dssp             STTTTTCCHHHHHHHHTTTCCSCCH--------HHH---HH--------------------HHHHHH-----TCCEEEEE
T ss_pred             CHhhcCCCHHHHHHHHHCCCCCCCH--------HHH---HH--------------------HHHHhC-----CCCEEEEC
Confidence            4567889999999999998865322        211   11                    122332     24578899


Q ss_pred             CCCCChHHHHHHHHHHhcccc--ccCCCCCeEEEEe
Q 036464           82 VPGIGKTQLGIQLAVNVQIPV--EFGGLGGKAIYIG  115 (226)
Q Consensus        82 ~~GsGKT~l~~~la~~~~lp~--~~~~~~~~vlyi~  115 (226)
                      |+|+|||....-.+.......  .....+..++|+.
T Consensus        74 pTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~  109 (242)
T 3fe2_A           74 QTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLA  109 (242)
T ss_dssp             CTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEEC
T ss_pred             CCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEe
Confidence            999999977544433332110  0112356788887

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.72  E-value=0.00095  Score=53.96  Aligned_cols=26  Identities=31%  Similarity=0.276  Sum_probs=23.0

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ++.++.|.|+||+||||++..++...
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~l   51 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNF   51 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            46899999999999999999998554

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.72  E-value=0.0007  Score=55.85  Aligned_cols=27  Identities=30%  Similarity=0.233  Sum_probs=24.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ++ |+++.|.||+|+|||||+..++...
T Consensus        28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           28 VN-GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            78 9999999999999999998776554

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.71  E-value=0.0011  Score=51.78  Aligned_cols=25  Identities=28%  Similarity=0.396  Sum_probs=22.4

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHh
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ..++.|+|++|+||||++..++...
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4589999999999999999998775

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.70  E-value=0.0011  Score=54.20  Aligned_cols=24  Identities=33%  Similarity=0.346  Sum_probs=21.6

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHh
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .++.|+|+|||||||++..++...
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcC
Confidence            378999999999999999998775

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.70  E-value=0.0013  Score=52.25  Aligned_cols=30  Identities=27%  Similarity=0.309  Sum_probs=25.7

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK  116 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~  116 (226)
                      ++.|.|||||||+|.|..++..+-           +.+|++
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g-----------~~~ist   31 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG-----------FVHIST   31 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC-----------CEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC-----------CeEEcH
Confidence            578999999999999999998874           567874

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.70  E-value=0.00089  Score=50.32  Aligned_cols=20  Identities=40%  Similarity=0.675  Sum_probs=18.4

Q ss_pred             eeEEEecCCCCChHHHHHHH
Q 036464           75 EVTEIGGVPGIGKTQLGIQL   94 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~l   94 (226)
                      .++.|+|+|||||||++..+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            36899999999999999988

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.68  E-value=0.0015  Score=51.07  Aligned_cols=28  Identities=14%  Similarity=0.073  Sum_probs=24.8

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ...|.++.|+|++||||||++..++...
T Consensus         7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l   34 (212)
T 2wwf_A            7 KKKGKFIVFEGLDRSGKSTQSKLLVEYL   34 (212)
T ss_dssp             CBCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             hhcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            4568899999999999999999998765

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.66  E-value=0.0013  Score=51.49  Aligned_cols=28  Identities=18%  Similarity=0.182  Sum_probs=24.5

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      .+|.++.|+|++||||||++..++....
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999999987653

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=96.66  E-value=0.0021  Score=57.27  Aligned_cols=71  Identities=17%  Similarity=0.205  Sum_probs=38.0

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhcc---ccccCCCCCeEEEEeccccCchHHH-HHHHHHHHHHhhCCCceEEEEc
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQI---PVEFGGLGGKAIYIGKCLGFYTEQS-AVINYLDKFVSEHKDVKVVIID  147 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~l---p~~~~~~~~~vlyi~~e~~~~~~~~-~~l~~l~~~l~~~~~~~lvVID  147 (226)
                      ...-++|+||||+|||+++..++..+.-   |..  -.+.++++++... .+.... ..+..+-..+... +..+++||
T Consensus       200 ~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~--l~~~~~~~l~~~~-~~~g~~e~~~~~~~~~~~~~-~~~iLfiD  274 (468)
T 3pxg_A          200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEI--LRDKRVMTLDMGT-KYRGEFEDRLKKVMDEIRQA-GNIILFID  274 (468)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTT--TSSCCEECC-----------CTTHHHHHHHHHTC-CCCEEEEC
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChh--hcCCeEEEeeCCc-cccchHHHHHHHHHHHHHhc-CCeEEEEe
Confidence            3445689999999999999999988741   111  1244566665330 111110 1122222333333 56799999

>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A

Probab=96.65  E-value=0.0033  Score=41.07  Aligned_cols=33  Identities=15%  Similarity=0.310  Sum_probs=31.1

Q ss_pred             CCCCCHHHHHHHHhCCCccHHHHHhCChhHHhh
Q 036464            5 KLPISATQRGKLISAGYTSLSSICSASSSDISR   37 (226)
Q Consensus         5 ~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~   37 (226)
                      .|++++.+.++|.++||+|++++..+++.+|..
T Consensus        11 ~lgI~e~~a~~L~~~Gf~tve~vA~~~~~eL~~   43 (70)
T 1u9l_A           11 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLE   43 (70)
T ss_dssp             HHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTT
T ss_pred             hCCCCHHHHHHHHHcCcCcHHHHHcCCHHHHhh
Confidence            367999999999999999999999999999988

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.65  E-value=0.0026  Score=51.16  Aligned_cols=30  Identities=17%  Similarity=0.140  Sum_probs=26.6

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ...+|.++.|.|+||+||||++..++....
T Consensus        22 ~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           22 SNAMSAFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             CCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             ecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            356899999999999999999999988764

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.64  E-value=0.0012  Score=53.75  Aligned_cols=26  Identities=31%  Similarity=0.373  Sum_probs=23.8

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      ++|.++.|.|++||||||++..++..
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~   50 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAES   50 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            67899999999999999999999854

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=96.63  E-value=0.011  Score=53.31  Aligned_cols=26  Identities=27%  Similarity=0.379  Sum_probs=23.1

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ...++.++|.||+||||++..++...
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L   59 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYL   59 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34689999999999999999998775

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.63  E-value=0.0014  Score=51.92  Aligned_cols=26  Identities=23%  Similarity=0.183  Sum_probs=23.3

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +|.++.|.|+|||||||++..++...
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            46789999999999999999998875

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.63  E-value=0.0012  Score=51.61  Aligned_cols=25  Identities=28%  Similarity=0.353  Sum_probs=22.5

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHh
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      |+++.|.|++|+||||++..++...
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhc
Confidence            6789999999999999999888765

>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C

Probab=96.63  E-value=0.0023  Score=57.95  Aligned_cols=46  Identities=22%  Similarity=0.164  Sum_probs=41.4

Q ss_pred             cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .....+.||++.+|.++-  +-+|+-..|.|++|+|||+++.+++.+.
T Consensus       200 ~~~epl~TGirvID~l~P--igrGqr~~Ifg~~g~GKT~l~~~ia~~~  245 (578)
T 3gqb_A          200 DPNTPFLTGMRILDVLFP--VAMGGTAAIPGPFGSGKSVTQQSLAKWS  245 (578)
T ss_dssp             CSCSEECCSCHHHHTTSC--EETTCEEEECCCTTSCHHHHHHHHHHHS
T ss_pred             cCCCcccccchhhhhccc--ccCCCEEeeeCCCCccHHHHHHHHHhcc
Confidence            456889999999999986  7889999999999999999999998874

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.63  E-value=0.0012  Score=52.58  Aligned_cols=28  Identities=21%  Similarity=0.277  Sum_probs=22.8

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ..++.++.|.|+|||||||++..++...
T Consensus         4 ~~~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            4 SARLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             ---CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            4556789999999999999999998765

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.62  E-value=0.00098  Score=50.93  Aligned_cols=26  Identities=27%  Similarity=0.313  Sum_probs=18.6

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ++.++.|+|+|||||||++..++...
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            46789999999999999999998764

>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A

Probab=96.62  E-value=0.0017  Score=58.75  Aligned_cols=46  Identities=24%  Similarity=0.154  Sum_probs=41.0

Q ss_pred             cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .....+.||++.+|.++-  +-+|+-..|.|++|+|||+++.+++.+.
T Consensus       206 ~~~epl~TGirvID~l~P--igkGqr~~I~g~~g~GKT~L~~~ia~~~  251 (588)
T 3mfy_A          206 PPEVPLITGQRVIDTFFP--QAKGGTAAIPGPAGSGKTVTQHQLAKWS  251 (588)
T ss_dssp             CSCSEECCSCHHHHHHSC--EETTCEEEECSCCSHHHHHHHHHHHHHS
T ss_pred             cCCcccccCcchhhccCC--cccCCeEEeecCCCCCHHHHHHHHHhcc
Confidence            346789999999999986  7889999999999999999999998763

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.62  E-value=0.0016  Score=50.83  Aligned_cols=27  Identities=30%  Similarity=0.450  Sum_probs=23.5

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ..+.++.|+|+||+||||++..++...
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            445689999999999999999998865

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.58  E-value=0.0015  Score=50.77  Aligned_cols=26  Identities=15%  Similarity=0.222  Sum_probs=23.3

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +|.++.|.|++||||||++..++...
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            57789999999999999999988764

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.57  E-value=0.0012  Score=53.77  Aligned_cols=38  Identities=24%  Similarity=0.233  Sum_probs=30.0

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      ...+.++.|+|+|||||||++..++....         ..+++++..
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~---------~~~~~~~~D   66 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ---------GNIVIIDGD   66 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHHTT---------TCCEEECGG
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHhcC---------CCcEEEecH
Confidence            35678999999999999999999987652         245677754

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.57  E-value=0.0021  Score=49.41  Aligned_cols=23  Identities=26%  Similarity=0.380  Sum_probs=21.0

Q ss_pred             eEEEecCCCCChHHHHHHHHHHh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ++.|+|++||||||++..++...
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999998865

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.56  E-value=0.0016  Score=50.41  Aligned_cols=26  Identities=27%  Similarity=0.204  Sum_probs=23.3

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .+.++.|+|+|||||||++..++...
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999998875

>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B

Probab=96.55  E-value=0.0068  Score=62.01  Aligned_cols=36  Identities=6%  Similarity=0.214  Sum_probs=31.9

Q ss_pred             CCCCCCC-CCHHHHHHHHhCCCccHHHHHhCChhHHhh
Q 036464            1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR   37 (226)
Q Consensus         1 ~~~~~l~-l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~   37 (226)
                      .||.+++ +++..+.+|.++|+ |.+++...++.+|..
T Consensus       726 ~~L~q~~~i~~~~~~~l~~~~~-~~~~l~~~~~~~l~~  762 (1724)
T 4f92_B          726 CPLRQFRKLPEEVVKKIEKKNF-PFERLYDLNHNEIGE  762 (1724)
T ss_dssp             CGGGGSTTSCHHHHHHHHTSSC-CGGGGGGCCHHHHHH
T ss_pred             CceecCCCCCHHHHHHHHhcCC-CHHHHHhCCHHHHHH
Confidence            3788898 99999999999999 899999999987764

>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19

Probab=96.55  E-value=0.0053  Score=51.59  Aligned_cols=76  Identities=17%  Similarity=0.149  Sum_probs=51.7

Q ss_pred             CCCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEe
Q 036464            1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIG   80 (226)
Q Consensus         1 ~~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~   80 (226)
                      |+.++++|++.+.+.|++.||.+..+        .++   .|                    ++.++.|    +.-+.+.
T Consensus         6 ~~f~~~~l~~~~~~~l~~~g~~~~~~--------~Q~---~~--------------------i~~~~~~----~~~~l~~   50 (367)
T 1hv8_A            6 MNFNELNLSDNILNAIRNKGFEKPTD--------IQM---KV--------------------IPLFLND----EYNIVAQ   50 (367)
T ss_dssp             CCGGGSSCCHHHHHHHHHHTCCSCCH--------HHH---HH--------------------HHHHHHT----CSEEEEE
T ss_pred             CchhhcCCCHHHHHHHHHcCCCCCCH--------HHH---HH--------------------HHHHhCC----CCCEEEE
Confidence            46778999999999999999875322        211   11                    1223322    2467899


Q ss_pred             cCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           81 GVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        81 G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      +|+|+|||..+...+......    ..+.+++++.
T Consensus        51 ~~TGsGKT~~~~~~~~~~~~~----~~~~~~lil~   81 (367)
T 1hv8_A           51 ARTGSGKTASFAIPLIELVNE----NNGIEAIILT   81 (367)
T ss_dssp             CCSSSSHHHHHHHHHHHHSCS----SSSCCEEEEC
T ss_pred             CCCCChHHHHHHHHHHHHhcc----cCCCcEEEEc
Confidence            999999999887776665521    2456788887

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.53  E-value=0.0023  Score=49.24  Aligned_cols=25  Identities=24%  Similarity=0.181  Sum_probs=21.9

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhc
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      .++.|+|++|+||||++..++....
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhH
Confidence            4789999999999999999987753

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.52  E-value=0.002  Score=51.05  Aligned_cols=25  Identities=32%  Similarity=0.400  Sum_probs=22.2

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHh
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.++.|.|++||||||++..++...
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998765

>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*

Probab=96.50  E-value=0.0016  Score=57.92  Aligned_cols=46  Identities=15%  Similarity=0.167  Sum_probs=41.8

Q ss_pred             ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ....+.||++.+|-++-  +-+|+-..|.|++|+|||+|+.++|.+..
T Consensus       132 ~~e~l~TGir~ID~l~p--igrGQr~~Ifgg~G~GKt~Ll~~Ia~~~~  177 (469)
T 2c61_A          132 PKDFIQTGISTIDGTNT--LVRGQKLPIFSASGLPHNEIALQIARQAS  177 (469)
T ss_dssp             CCSBCBCSCHHHHTTSC--CBTTCBCCEEECTTSCHHHHHHHHHHHCB
T ss_pred             cccccceeeEeeeeeec--cccCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            45789999999999986  78899999999999999999999999875

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.50  E-value=0.0019  Score=49.35  Aligned_cols=27  Identities=26%  Similarity=0.374  Sum_probs=22.6

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+| ++.|+|++|+|||+++..++...
T Consensus        24 ~~~g-~~~i~G~NGsGKStll~ai~~~l   50 (182)
T 3kta_A           24 FSKG-FTAIVGANGSGKSNIGDAILFVL   50 (182)
T ss_dssp             CCSS-EEEEEECTTSSHHHHHHHHHHHT
T ss_pred             cCCC-cEEEECCCCCCHHHHHHHHHHHH
Confidence            5566 99999999999999998776543

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.50  E-value=0.0027  Score=49.00  Aligned_cols=28  Identities=21%  Similarity=0.159  Sum_probs=23.1

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ..-.++.|+|++|+||||++..++....
T Consensus         4 ~~~~~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            4 TMIPLLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             -CCCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CcceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence            3456899999999999999999887653

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.48  E-value=0.0017  Score=49.76  Aligned_cols=24  Identities=33%  Similarity=0.595  Sum_probs=21.5

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHh
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .++.|+|+|||||||++..++...
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc
Confidence            468999999999999999998875

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.46  E-value=0.0018  Score=49.39  Aligned_cols=23  Identities=30%  Similarity=0.332  Sum_probs=21.0

Q ss_pred             eEEEecCCCCChHHHHHHHHHHh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .+.|.|+|||||||++..++...
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58899999999999999998875

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=96.46  E-value=0.0032  Score=51.28  Aligned_cols=36  Identities=25%  Similarity=0.374  Sum_probs=31.5

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      ++.+.|..|+||||++.++|...+      ..+.+|+.||..
T Consensus         3 vI~vs~KGGvGKTT~a~nLA~~la------~~G~~VlliD~D   38 (269)
T 1cp2_A            3 QVAIYGKGGIGKSTTTQNLTSGLH------AMGKTIMVVGCD   38 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH------TTTCCEEEEEEC
T ss_pred             EEEEecCCCCcHHHHHHHHHHHHH------HCCCcEEEEcCC
Confidence            566689999999999999999987      578899999965

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.44  E-value=0.002  Score=51.09  Aligned_cols=27  Identities=19%  Similarity=0.153  Sum_probs=23.6

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .+|..+.|.|+|||||||++..++...
T Consensus         3 ~~~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            3 SKKHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             GGCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            346789999999999999999998876

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.44  E-value=0.0024  Score=49.71  Aligned_cols=26  Identities=27%  Similarity=0.226  Sum_probs=22.7

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ...++.|+|++||||||++..++...
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            35689999999999999999998764

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.43  E-value=0.0024  Score=51.70  Aligned_cols=27  Identities=22%  Similarity=0.194  Sum_probs=23.7

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .++.++.|.|+|||||||++..++...
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            356789999999999999999998765

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.42  E-value=0.0015  Score=58.96  Aligned_cols=71  Identities=13%  Similarity=0.098  Sum_probs=44.9

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-cCc---------------hHHHHHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-GFY---------------TEQSAVINYLDKF  134 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-~~~---------------~~~~~~l~~l~~~  134 (226)
                      ++.|.++.|+||+||||||++..++..+.       ...+++.|.... ...               .......+.+...
T Consensus       257 v~~g~~i~I~GptGSGKTTlL~aL~~~i~-------~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~  329 (511)
T 2oap_1          257 IEHKFSAIVVGETASGKTTTLNAIMMFIP-------PDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAA  329 (511)
T ss_dssp             HHTTCCEEEEESTTSSHHHHHHHHGGGSC-------TTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTT
T ss_pred             HhCCCEEEEECCCCCCHHHHHHHHHhhCC-------CCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHh
Confidence            36788999999999999999987765542       344566665321 000               0001122334444


Q ss_pred             HhhCCCceEEEEcCCc
Q 036464          135 VSEHKDVKVVIIDSIA  150 (226)
Q Consensus       135 l~~~~~~~lvVIDsl~  150 (226)
                      +.+  +|+.++++++.
T Consensus       330 LR~--~PD~iivgEir  343 (511)
T 2oap_1          330 LRQ--RPDYIIVGEVR  343 (511)
T ss_dssp             GGG--CCSEEEESCCC
T ss_pred             hcc--CCCeEEeCCcC
Confidence            543  68999999987

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.41  E-value=0.0021  Score=50.93  Aligned_cols=26  Identities=19%  Similarity=0.127  Sum_probs=23.1

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .+.++.|.|+|||||||++..++...
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45679999999999999999998876

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.40  E-value=0.0041  Score=51.92  Aligned_cols=29  Identities=24%  Similarity=0.291  Sum_probs=25.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      -.++.++.|+|++|+|||||+..++....
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence            45788999999999999999988877664

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.39  E-value=0.0054  Score=49.56  Aligned_cols=39  Identities=21%  Similarity=0.184  Sum_probs=32.8

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      .+..++.+.|.+|+||||++.+++...+       .+.+|+.++.+
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-------~g~~v~vvd~D   50 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-------DNYKVAYVNLD   50 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHT-------TTSCEEEEECC
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHHH-------CCCeEEEEeCC
Confidence            4567899999999999999999998764       46788888855

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.39  E-value=0.0041  Score=53.23  Aligned_cols=39  Identities=23%  Similarity=0.316  Sum_probs=32.2

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      ...++.|+|+||+||||++.+++....      ..+.+|..++..
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~------~~g~kV~vi~~D  116 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHLI------ERGHRVAVLAVD  116 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHHH------TTTCCEEEEEEC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHH------hCCCceEEEecC
Confidence            346899999999999999999998876      467788887754

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.39  E-value=0.0025  Score=48.86  Aligned_cols=25  Identities=24%  Similarity=0.296  Sum_probs=22.2

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHh
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ..++.|+|+|||||||++..++...
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998765

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.37  E-value=0.0024  Score=49.48  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=21.0

Q ss_pred             eEEEecCCCCChHHHHHHHHHHh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ++.|.|++||||||++..++...
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            57899999999999999998875

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.36  E-value=0.0016  Score=52.21  Aligned_cols=28  Identities=21%  Similarity=-0.014  Sum_probs=23.9

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      ..++|.++.|.|++|+||||++..++..
T Consensus        16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            3578999999999999999999776543

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.35  E-value=0.0025  Score=50.16  Aligned_cols=23  Identities=26%  Similarity=0.346  Sum_probs=20.5

Q ss_pred             eEEEecCCCCChHHHHHHHHHHh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .+.|+|+|||||||++..++...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998765

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=96.33  E-value=0.0028  Score=50.61  Aligned_cols=35  Identities=20%  Similarity=0.184  Sum_probs=30.7

Q ss_pred             EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      +.+.|..|+||||++.++|...+      ..+.+|+.||..
T Consensus         3 I~vs~kGGvGKTt~a~~LA~~la------~~g~~VlliD~D   37 (254)
T 3kjh_A            3 LAVAGKGGVGKTTVAAGLIKIMA------SDYDKIYAVDGD   37 (254)
T ss_dssp             EEEECSSSHHHHHHHHHHHHHHT------TTCSCEEEEEEC
T ss_pred             EEEecCCCCCHHHHHHHHHHHHH------HCCCeEEEEeCC
Confidence            44589999999999999999998      578999999964

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.30  E-value=0.038  Score=40.52  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=19.9

Q ss_pred             eEEEecCCCCChHHHHHHHHHHh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+.+.|++|+|||+|+..++..-
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~~   28 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            36889999999999999988654

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=96.30  E-value=0.0037  Score=52.79  Aligned_cols=41  Identities=29%  Similarity=0.357  Sum_probs=35.7

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      +..-+++.|+|.-|+||||.+.+++...+      ..|.+|+.||..
T Consensus        45 i~~aKVIAIaGKGGVGKTTtavNLA~aLA------~~GkkVllID~D   85 (314)
T 3fwy_A           45 ITGAKVFAVYGKGGIGKSTTSSNLSAAFS------ILGKRVLQIGCD   85 (314)
T ss_dssp             --CCEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEEES
T ss_pred             CCCceEEEEECCCccCHHHHHHHHHHHHH------HCCCeEEEEecC
Confidence            55678999999999999999999999988      588999999955

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=96.30  E-value=0.0031  Score=58.31  Aligned_cols=37  Identities=27%  Similarity=0.404  Sum_probs=30.5

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      ...+.+|.||||||||+.+.+++....      ..+.+|+...
T Consensus       204 ~~~~~lI~GPPGTGKT~ti~~~I~~l~------~~~~~ILv~a  240 (646)
T 4b3f_X          204 QKELAIIHGPPGTGKTTTVVEIILQAV------KQGLKVLCCA  240 (646)
T ss_dssp             CSSEEEEECCTTSCHHHHHHHHHHHHH------HTTCCEEEEE
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHH------hCCCeEEEEc
Confidence            456899999999999999988887776      3567788777

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.29  E-value=0.0025  Score=50.40  Aligned_cols=26  Identities=23%  Similarity=0.291  Sum_probs=23.0

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .|..++|.||+|+|||+++..++...
T Consensus        33 ~g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           33 YGLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            46789999999999999999998764

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.29  E-value=0.0024  Score=49.92  Aligned_cols=22  Identities=23%  Similarity=0.270  Sum_probs=19.5

Q ss_pred             eeEEEecCCCCChHHHHHHHHH
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAV   96 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~   96 (226)
                      .++.|+|++||||||++..++.
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999988875

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=96.29  E-value=0.016  Score=46.55  Aligned_cols=30  Identities=17%  Similarity=0.148  Sum_probs=24.2

Q ss_pred             EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      ..++||+|+|||.++..++...         +.+++|+.
T Consensus       111 ~ll~~~tG~GKT~~a~~~~~~~---------~~~~liv~  140 (237)
T 2fz4_A          111 GCIVLPTGSGKTHVAMAAINEL---------STPTLIVV  140 (237)
T ss_dssp             EEEEESSSTTHHHHHHHHHHHS---------CSCEEEEE
T ss_pred             EEEEeCCCCCHHHHHHHHHHHc---------CCCEEEEe
Confidence            8899999999999998777653         35677776

>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19

Probab=96.29  E-value=0.013  Score=45.43  Aligned_cols=76  Identities=13%  Similarity=0.012  Sum_probs=47.7

Q ss_pred             CCCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEe
Q 036464            1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIG   80 (226)
Q Consensus         1 ~~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~   80 (226)
                      +..++++|++.+++.|.+.||.+..+        .++   .|                    ++.++.     |.-+.+.
T Consensus         3 ~~f~~~~l~~~l~~~l~~~g~~~~~~--------~Q~---~~--------------------i~~~~~-----~~~~lv~   46 (206)
T 1vec_A            3 NEFEDYCLKRELLMGIFEMGWEKPSP--------IQE---ES--------------------IPIALS-----GRDILAR   46 (206)
T ss_dssp             SSGGGSCCCHHHHHHHHTTTCCSCCH--------HHH---HH--------------------HHHHHT-----TCCEEEE
T ss_pred             CChhhcCCCHHHHHHHHHCCCCCCCH--------HHH---HH--------------------HHHHcc-----CCCEEEE
Confidence            45678999999999999999875322        211   11                    122332     2348899


Q ss_pred             cCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           81 GVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        81 G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      +|+|+|||....-.+......   ...+.+++|+.
T Consensus        47 apTGsGKT~~~~~~~~~~~~~---~~~~~~~lil~   78 (206)
T 1vec_A           47 AKNGTGKSGAYLIPLLERLDL---KKDNIQAMVIV   78 (206)
T ss_dssp             CCSSSTTHHHHHHHHHHHCCT---TSCSCCEEEEC
T ss_pred             CCCCCchHHHHHHHHHHHhcc---cCCCeeEEEEe
Confidence            999999997655444443311   12345688876

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.28  E-value=0.0026  Score=48.04  Aligned_cols=24  Identities=33%  Similarity=0.405  Sum_probs=21.4

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHh
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .++.|+|+|||||||++..++...
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999998865

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.28  E-value=0.0027  Score=49.96  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=20.3

Q ss_pred             eEEEecCCCCChHHHHHHHHHHh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .+.|+|+|||||||++..++...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999998765

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=96.26  E-value=0.0025  Score=58.22  Aligned_cols=51  Identities=18%  Similarity=0.261  Sum_probs=40.5

Q ss_pred             hhHHHhhCC-CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           61 ADLDNILGG-GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        61 ~~LD~~l~G-Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      +.||.++++ +-....++.+.|.+|+|||+++.++|...+      ..+.+|+++|..
T Consensus       313 ~~l~~~~~~~~~~~~~~~~~~~~~g~Gktt~a~~lA~~l~------~~g~~vllvD~D  364 (589)
T 1ihu_A          313 PSLSALVDDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLA------DMGFDVHLTTSD  364 (589)
T ss_dssp             CCHHHHHHHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEESC
T ss_pred             chhhhhhhhhhccCCeEEEEecCCCCChhhHHHHHHHHHH------HCCCcEEEEeCC
Confidence            566776653 234566888899999999999999999987      468899999854

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=96.25  E-value=0.0039  Score=56.97  Aligned_cols=39  Identities=18%  Similarity=0.290  Sum_probs=34.8

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      ...++.+.|.+|+||||++.++|...+      ..|.+|++||+.
T Consensus         7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA------~~G~rVLlvd~D   45 (589)
T 1ihu_A            7 IPPYLFFTGKGGVGKTSISCATAIRLA------EQGKRVLLVSTD   45 (589)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEECC
T ss_pred             CCEEEEEeCCCcCHHHHHHHHHHHHHH------HCCCcEEEEECC
Confidence            457899999999999999999999988      478899999965

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=96.24  E-value=0.0047  Score=50.94  Aligned_cols=39  Identities=26%  Similarity=0.338  Sum_probs=32.8

Q ss_pred             CCeeEEEecC-CCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           73 CREVTEIGGV-PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        73 ~G~i~~i~G~-~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      ...++.|+++ +|+|||+++.++|..++      ..+.+|+.||..
T Consensus        81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA------~~G~rVLLID~D  120 (271)
T 3bfv_A           81 AVQSIVITSEAPGAGKSTIAANLAVAYA------QAGYKTLIVDGD  120 (271)
T ss_dssp             CCCEEEEECSSTTSSHHHHHHHHHHHHH------HTTCCEEEEECC
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHH------hCCCeEEEEeCC
Confidence            4567777765 89999999999999988      478899999965

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=96.23  E-value=0.0094  Score=58.27  Aligned_cols=55  Identities=18%  Similarity=0.175  Sum_probs=35.8

Q ss_pred             hhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           61 ADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        61 ~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      ..|...|..+=....++.|+|++|+|||+||.+++.....  ........++|++..
T Consensus       134 ~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~--~~~~~~~~~~~v~~~  188 (1249)
T 3sfz_A          134 HAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSL--LEGCFSGGVHWVSIG  188 (1249)
T ss_dssp             HHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHH--HTTTSTTCEEEEECC
T ss_pred             HHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhH--HHhhCCCeEEEEEEC
Confidence            3455555322244578999999999999999988765310  011245678898843

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.23  E-value=0.0033  Score=47.44  Aligned_cols=25  Identities=24%  Similarity=0.345  Sum_probs=21.8

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHh
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -.++.|.|.+||||||++..++...
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~l   31 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLAL   31 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHh
Confidence            3578999999999999999998875

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=96.19  E-value=0.0041  Score=51.36  Aligned_cols=37  Identities=27%  Similarity=0.378  Sum_probs=31.8

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      .++.|+|..|+||||++.++|...+      ..+.+|+.||..
T Consensus         3 kvIavs~KGGvGKTT~a~nLA~~La------~~G~rVlliD~D   39 (289)
T 2afh_E            3 RQCAIYGKGGIGKSTTTQNLVAALA------EMGKKVMIVGCD   39 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHH------HTTCCEEEEEEC
T ss_pred             eEEEEeCCCcCcHHHHHHHHHHHHH------HCCCeEEEEecC
Confidence            3566689999999999999999987      468899999965

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.19  E-value=0.003  Score=57.50  Aligned_cols=42  Identities=19%  Similarity=0.105  Sum_probs=32.6

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      +++|.++.|+|++||||||++..++.... |    ..++.+.|++..
T Consensus       366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~-~----~~G~~i~~lDgD  407 (552)
T 3cr8_A          366 ERQGFTVFFTGLSGAGKSTLARALAARLM-E----MGGRCVTLLDGD  407 (552)
T ss_dssp             GGSCEEEEEEESSCHHHHHHHHHHHHHHH-T----TCSSCEEEESSH
T ss_pred             cccceEEEEECCCCChHHHHHHHHHHhhc-c----cCCceEEEECCc
Confidence            56899999999999999999999888764 1    122356678764

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.19  E-value=0.0023  Score=52.36  Aligned_cols=28  Identities=25%  Similarity=0.319  Sum_probs=25.4

Q ss_pred             CCC---CeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGC---REVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~---G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+   |.++.|+|++|+||||++..++...
T Consensus        42 i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           42 VKPYLNGRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             THHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             hhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            566   8999999999999999999998865

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*

Probab=96.19  E-value=0.0065  Score=52.09  Aligned_cols=49  Identities=18%  Similarity=0.321  Sum_probs=38.5

Q ss_pred             hhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc--cccccCCCCCeEEEEecc
Q 036464           61 ADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ--IPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        61 ~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~--lp~~~~~~~~~vlyi~~e  117 (226)
                      +.|+.++..  +...++...|.+|+||||++.++|...+  .      .|.+|+.||+.
T Consensus         7 ~~l~~l~~~--~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~------~G~rVLLvD~D   57 (354)
T 2woj_A            7 PNLHSLITS--TTHKWIFVGGKGGVGKTTSSCSIAIQMALSQ------PNKQFLLISTD   57 (354)
T ss_dssp             SSCHHHHTC--SSCCEEEEEESTTSSHHHHHHHHHHHHHHHC------TTSCEEEEECC
T ss_pred             ccHHHHhcC--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhc------CCCeEEEEECC
Confidence            346667753  3356888889999999999999998876  3      67899999954

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.18  E-value=0.003  Score=49.19  Aligned_cols=21  Identities=19%  Similarity=0.253  Sum_probs=19.4

Q ss_pred             eEEEecCCCCChHHHHHHHHH
Q 036464           76 VTEIGGVPGIGKTQLGIQLAV   96 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~   96 (226)
                      ++.|+|++||||||++..++.
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            688999999999999998886

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=96.17  E-value=0.005  Score=51.54  Aligned_cols=39  Identities=26%  Similarity=0.331  Sum_probs=32.9

Q ss_pred             CCeeEEEecC-CCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           73 CREVTEIGGV-PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        73 ~G~i~~i~G~-~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      .+.++.|+++ +|+|||+++.++|..++      ..+.+|+.||..
T Consensus       103 ~~kvI~vts~kgG~GKTtva~nLA~~lA------~~G~rVLLID~D  142 (299)
T 3cio_A          103 ENNILMITGATPDSGKTFVSSTLAAVIA------QSDQKVLFIDAD  142 (299)
T ss_dssp             SCCEEEEEESSSSSCHHHHHHHHHHHHH------HTTCCEEEEECC
T ss_pred             CCeEEEEECCCCCCChHHHHHHHHHHHH------hCCCcEEEEECC
Confidence            4567777775 89999999999999987      468899999965

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=96.16  E-value=0.0032  Score=49.16  Aligned_cols=24  Identities=29%  Similarity=0.329  Sum_probs=20.8

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHh
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.++|+||+|+|||||+..+....
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            357899999999999999988764

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.16  E-value=0.0067  Score=48.25  Aligned_cols=38  Identities=18%  Similarity=0.100  Sum_probs=29.6

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      -+|.++.|.|++|+||||++..++....      ..+.+|+...
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~------~~~~~v~~~~   41 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLR------ERGIEVQLTR   41 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHH------TTTCCEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHH------HcCCCccccc
Confidence            3588999999999999999999987764      3455665443

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.15  E-value=0.0031  Score=52.84  Aligned_cols=32  Identities=19%  Similarity=0.340  Sum_probs=26.4

Q ss_pred             hHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHH
Q 036464           62 DLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLA   95 (226)
Q Consensus        62 ~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la   95 (226)
                      .+|.++.  +..|.++.|.|+||+|||||+..++
T Consensus       155 gi~~L~~--~l~G~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          155 GIDELVD--YLEGFICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             THHHHHH--HTTTCEEEEECSTTSSHHHHHHHHH
T ss_pred             CHHHHHh--hccCcEEEEECCCCCCHHHHHHHHH
Confidence            3555553  4568999999999999999999888

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.14  E-value=0.0014  Score=51.36  Aligned_cols=24  Identities=33%  Similarity=0.441  Sum_probs=21.4

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhc
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ++.|.|++||||||++..++....
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999987763

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.12  E-value=0.0031  Score=55.55  Aligned_cols=29  Identities=21%  Similarity=0.109  Sum_probs=24.6

Q ss_pred             CCCCCee--EEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREV--TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i--~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|.+  +.|+|++|+|||||+..++...
T Consensus        36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           36 SVSQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             SCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             EecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            3889999  9999999999999998887653

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.12  E-value=0.0043  Score=49.62  Aligned_cols=26  Identities=31%  Similarity=0.293  Sum_probs=23.0

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .+..+.|.|+|||||||++..++...
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            35679999999999999999998876

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.11  E-value=0.0068  Score=51.36  Aligned_cols=39  Identities=15%  Similarity=0.011  Sum_probs=28.4

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      -++.|.|++||||||++..++.....-    ..+++|.+++..
T Consensus        93 ~iigI~GpsGSGKSTl~~~L~~ll~~~----~~~~~v~~i~~D  131 (321)
T 3tqc_A           93 YIIGIAGSVAVGKSTTSRVLKALLSRW----PDHPNVEVITTD  131 (321)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHTTS----TTCCCEEEEEGG
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhccc----CCCCeEEEEeec
Confidence            489999999999999998887665310    123567777754

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.11  E-value=0.0036  Score=56.77  Aligned_cols=27  Identities=30%  Similarity=0.497  Sum_probs=24.7

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +|..+.|+||||+|||+++..++...-
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~  133 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLG  133 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            688999999999999999999988763

>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}

Probab=96.10  E-value=0.013  Score=50.16  Aligned_cols=74  Identities=12%  Similarity=0.051  Sum_probs=45.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEecC
Q 036464            3 VSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV   82 (226)
Q Consensus         3 ~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~   82 (226)
                      ++.+++++...+.|.+.||.....        .++                       ..++.++.     |.-+.+.+|
T Consensus        42 f~~~~l~~~~~~~l~~~~~~~~~~--------~Q~-----------------------~~i~~~~~-----~~~~lv~a~   85 (414)
T 3eiq_A           42 FDDMNLSESLLRGIYAYGFEKPSA--------IQQ-----------------------RAILPCIK-----GYDVIAQAQ   85 (414)
T ss_dssp             GGGGCCCHHHHHHHHHTTCCSCCH--------HHH-----------------------HHHHHHHT-----TCCEEECCC
T ss_pred             HhhCCCCHHHHHHHHHcCCCCCCH--------HHH-----------------------HHhHHHhC-----CCCEEEECC
Confidence            345677888888888877765222        111                       12233343     234799999


Q ss_pred             CCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        83 ~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      +|+|||..+...+......   ...+.+++|+.
T Consensus        86 TGsGKT~~~~~~~~~~~~~---~~~~~~~lil~  115 (414)
T 3eiq_A           86 SGTGKTATFAISILQQIEL---DLKATQALVLA  115 (414)
T ss_dssp             SCSSSHHHHHHHHHHHCCT---TSCSCCEEEEC
T ss_pred             CCCcccHHHHHHHHHHHhh---cCCceeEEEEe
Confidence            9999998876666655421   12456788887

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=96.10  E-value=0.0074  Score=51.13  Aligned_cols=39  Identities=23%  Similarity=0.357  Sum_probs=34.0

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      ...+..+.|.+|+||||++..+|...+      ..|.+|+.+|+.
T Consensus        18 ~~~i~v~sgkGGvGKTTva~~LA~~lA------~~G~rVllvD~D   56 (329)
T 2woo_A           18 SLKWIFVGGKGGVGKTTTSCSLAIQMS------KVRSSVLLISTD   56 (329)
T ss_dssp             TCCEEEEECSSSSSHHHHHHHHHHHHH------TSSSCEEEEECC
T ss_pred             CCEEEEEeCCCCCcHHHHHHHHHHHHH------HCCCeEEEEECC
Confidence            356788899999999999999999988      578899999854

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.09  E-value=0.0047  Score=53.18  Aligned_cols=35  Identities=23%  Similarity=0.280  Sum_probs=27.5

Q ss_pred             CchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           59 SCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        59 g~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      |++.|...+     +|+++.|.|+||+|||||+..++...
T Consensus       205 gl~~L~~~~-----~G~~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          205 GLKPLEEAL-----TGRISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             THHHHHHHH-----TTSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred             CHHHHHHhc-----CCCEEEEECCCCccHHHHHHHHhccc
Confidence            556666554     57899999999999999998777543

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.08  E-value=0.0067  Score=52.42  Aligned_cols=38  Identities=24%  Similarity=0.205  Sum_probs=30.7

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      ..+.-+.|+|++|+|||+++..++....      ..+.+++++|
T Consensus        33 ~~~~~~~i~G~~G~GKs~~~~~~~~~~~------~~~~~~~~~D   70 (392)
T 4ag6_A           33 RTNSNWTILAKPGAGKSFTAKMLLLREY------MQGSRVIIID   70 (392)
T ss_dssp             BCCCCEEEECCTTSSHHHHHHHHHHHHH------TTTCCEEEEE
T ss_pred             cccCceEEEcCCCCCHHHHHHHHHHHHH------HCCCEEEEEe
Confidence            3566789999999999999999887765      3556777777

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=96.07  E-value=0.0082  Score=47.87  Aligned_cols=38  Identities=11%  Similarity=0.086  Sum_probs=31.2

Q ss_pred             CeeEEEe-cCCCCChHHHHHHHHHHhccccccCCC-CCeEEEEecc
Q 036464           74 REVTEIG-GVPGIGKTQLGIQLAVNVQIPVEFGGL-GGKAIYIGKC  117 (226)
Q Consensus        74 G~i~~i~-G~~GsGKT~l~~~la~~~~lp~~~~~~-~~~vlyi~~e  117 (226)
                      +.++.++ +..|+||||++.++|...+      .. +.+|++||..
T Consensus         4 ~~vI~v~s~kGGvGKTt~a~~LA~~la------~~~g~~VlliD~D   43 (245)
T 3ea0_A            4 KRVFGFVSAKGGDGGSCIAANFAFALS------QEPDIHVLAVDIS   43 (245)
T ss_dssp             CEEEEEEESSTTSSHHHHHHHHHHHHT------TSTTCCEEEEECC
T ss_pred             CeEEEEECCCCCcchHHHHHHHHHHHH------hCcCCCEEEEECC
Confidence            4555555 5689999999999999988      46 8999999965

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.07  E-value=0.0033  Score=53.65  Aligned_cols=27  Identities=30%  Similarity=0.475  Sum_probs=23.9

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++.++.|+||+|+|||+|+..+|...
T Consensus        38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           38 RKEKLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             cCCceEEEECCCCCCHHHHHHHHHHHC
Confidence            456799999999999999999999765

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.06  E-value=0.0044  Score=46.55  Aligned_cols=23  Identities=22%  Similarity=0.228  Sum_probs=20.7

Q ss_pred             eEEEecCCCCChHHHHHHHHHHh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .+.|.|+|||||||++..++...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998765

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.03  E-value=0.0047  Score=47.79  Aligned_cols=24  Identities=25%  Similarity=0.246  Sum_probs=21.1

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHH
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      ..++.|+|++||||||++..++..
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            468999999999999999988764

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.01  E-value=0.0038  Score=53.58  Aligned_cols=33  Identities=21%  Similarity=0.106  Sum_probs=27.7

Q ss_pred             hCCCCCC--CeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           67 LGGGIGC--REVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        67 l~GGi~~--G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +.--+++  |+.+.|.|++|+|||||+..++....
T Consensus       161 v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          161 IPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             SCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             CCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            3345667  99999999999999999999887754

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.00  E-value=0.0046  Score=50.04  Aligned_cols=25  Identities=28%  Similarity=0.413  Sum_probs=22.3

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHh
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .-++.|.||||+||||++..++...
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4589999999999999999998775

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=96.00  E-value=0.0092  Score=51.10  Aligned_cols=50  Identities=22%  Similarity=0.323  Sum_probs=38.4

Q ss_pred             hHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           62 DLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        62 ~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      .|+.++..  +.-.++.+.|..|+||||++.++|..++..    ..+.+|+.||+.
T Consensus         8 ~L~~~l~~--~~~~i~~~~gkGGvGKTt~a~~lA~~la~~----~~g~~vllid~D   57 (348)
T 3io3_A            8 TLESIVQH--DSLKWIFVGGKGGVGKTTTSSSVAVQLALA----QPNEQFLLISTD   57 (348)
T ss_dssp             SSHHHHTC--TTCSEEEEECSTTSSHHHHHHHHHHHHHHH----CTTSCEEEEECC
T ss_pred             hHHHHhcC--CCcEEEEEeCCCCCcHHHHHHHHHHHHHHh----cCCCeEEEEECC
Confidence            45666753  334799999999999999999999887610    267899999853

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.00  E-value=0.003  Score=52.73  Aligned_cols=39  Identities=18%  Similarity=0.213  Sum_probs=25.2

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      ++-++.|+|++||||||++..++...-      ..+.++.+|+..
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg------~~~~~~~vI~~D   42 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFR------REGVKAVSIEGD   42 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHH------HHTCCEEEEEGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHh------hcCCCeeEeecc
Confidence            355899999999999999999887542      122346666644

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.97  E-value=0.042  Score=41.62  Aligned_cols=24  Identities=38%  Similarity=0.436  Sum_probs=20.6

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhc
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      -+.+.|++|+|||+|+..++....
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~~~   46 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQNHF   46 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCCC
Confidence            478899999999999999987643

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=95.95  E-value=0.005  Score=48.99  Aligned_cols=23  Identities=26%  Similarity=0.138  Sum_probs=20.7

Q ss_pred             eEEEecCCCCChHHHHHHHHHHh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ++.|.|+|||||||++..++...
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998765

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.94  E-value=0.04  Score=41.31  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=20.2

Q ss_pred             eEEEecCCCCChHHHHHHHHHHh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+.+.|++|+|||+|+..++..-
T Consensus        20 ki~v~G~~~~GKSsli~~l~~~~   42 (187)
T 2a9k_A           20 KVIMVGSGGVGKSALTLQFMYDE   42 (187)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhhCC
Confidence            47899999999999999988654

>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B

Probab=95.94  E-value=0.022  Score=48.61  Aligned_cols=77  Identities=14%  Similarity=0.143  Sum_probs=49.2

Q ss_pred             CCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEec
Q 036464            2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGG   81 (226)
Q Consensus         2 ~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G   81 (226)
                      ++++++|++.+++.|.+.||.....        .++   .                    .++.++.|   .+.-+.+.+
T Consensus        26 ~f~~~~l~~~l~~~l~~~g~~~~~~--------~Q~---~--------------------~i~~~~~~---~~~~~lv~a   71 (412)
T 3fht_A           26 SFEELRLKPQLLQGVYAMGFNRPSK--------IQE---N--------------------ALPLMLAE---PPQNLIAQS   71 (412)
T ss_dssp             CTGGGTCCHHHHHHHHHTTCCSCCH--------HHH---H--------------------HHHHHHSS---SCCCEEEEC
T ss_pred             CHhhCCCCHHHHHHHHHcCCCCCCH--------HHH---H--------------------HHHHHhcC---CCCeEEEEC
Confidence            4567789999999999999865322        111   1                    12333433   356789999


Q ss_pred             CCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           82 VPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        82 ~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      |+|+|||..+...+......   ...+.+++|+.
T Consensus        72 pTGsGKT~~~~~~~~~~~~~---~~~~~~~lil~  102 (412)
T 3fht_A           72 QSGTGKTAAFVLAMLSQVEP---ANKYPQCLCLS  102 (412)
T ss_dssp             CTTSCHHHHHHHHHHHHCCT---TSCSCCEEEEC
T ss_pred             CCCchHHHHHHHHHHHHhhh---cCCCCCEEEEC
Confidence            99999998765555544421   12344788886

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.93  E-value=0.0075  Score=51.59  Aligned_cols=27  Identities=19%  Similarity=0.197  Sum_probs=23.7

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+.++.|+|+||+|||||...++...
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            457899999999999999999998754

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=95.93  E-value=0.0054  Score=48.35  Aligned_cols=24  Identities=25%  Similarity=0.320  Sum_probs=21.2

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHH
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAV   96 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~   96 (226)
                      .+.++.|+|++||||||++..++.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999998875

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.91  E-value=0.0062  Score=48.80  Aligned_cols=28  Identities=18%  Similarity=0.119  Sum_probs=24.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .++|.++.|+|++|+||||++..++...
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            5678899999999999999999888654

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=95.90  E-value=0.0074  Score=48.86  Aligned_cols=36  Identities=28%  Similarity=0.398  Sum_probs=30.4

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      +....+..|+|||+++.++|...+      ..+.+|++||..
T Consensus         5 I~v~s~kgGvGKTt~a~~LA~~la------~~g~~VlliD~D   40 (263)
T 1hyq_A            5 ITVASGKGGTGKTTITANLGVALA------QLGHDVTIVDAD   40 (263)
T ss_dssp             EEEEESSSCSCHHHHHHHHHHHHH------HTTCCEEEEECC
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHH------hCCCcEEEEECC
Confidence            445577899999999999999987      467899999965

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=95.90  E-value=0.0054  Score=49.71  Aligned_cols=43  Identities=7%  Similarity=-0.009  Sum_probs=29.7

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      -.++.|+|++||||||++..++...-.+.-. ..+.+++++++.
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d-~~~~~~~~i~~D   64 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVD-YRQKQVVILSQD   64 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGGGSC-GGGCSEEEEEGG
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhhhhccc-ccCCceEEEecC
Confidence            3589999999999999999998865322100 123456777754

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=95.88  E-value=0.023  Score=42.96  Aligned_cols=23  Identities=26%  Similarity=0.150  Sum_probs=20.0

Q ss_pred             eEEEecCCCCChHHHHHHHHHHh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+.|.|++|+|||+|+..++..-
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~~   35 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDGK   35 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999988654

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=95.85  E-value=0.0074  Score=47.94  Aligned_cols=36  Identities=25%  Similarity=0.398  Sum_probs=29.5

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      +....+..|+|||+++.++|...+      ..+.+|++||..
T Consensus         5 i~v~s~kgGvGKTt~a~~LA~~la------~~g~~VlliD~D   40 (237)
T 1g3q_A            5 ISIVSGKGGTGKTTVTANLSVALG------DRGRKVLAVDGD   40 (237)
T ss_dssp             EEEECSSTTSSHHHHHHHHHHHHH------HTTCCEEEEECC
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHH------hcCCeEEEEeCC
Confidence            344456789999999999999987      467899999964

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=95.84  E-value=0.0071  Score=52.09  Aligned_cols=40  Identities=18%  Similarity=0.287  Sum_probs=32.7

Q ss_pred             CCCeeEEEe-cCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           72 GCREVTEIG-GVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        72 ~~G~i~~i~-G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      ..+.++.++ |..|+||||++.++|...+      ..+.+|++||.+
T Consensus       141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La------~~g~rVlliD~D  181 (373)
T 3fkq_A          141 DKSSVVIFTSPCGGVGTSTVAAACAIAHA------NMGKKVFYLNIE  181 (373)
T ss_dssp             TSCEEEEEECSSTTSSHHHHHHHHHHHHH------HHTCCEEEEECC
T ss_pred             CCceEEEEECCCCCChHHHHHHHHHHHHH------hCCCCEEEEECC
Confidence            345666666 5899999999999999987      467899999965

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=95.84  E-value=0.0058  Score=48.11  Aligned_cols=23  Identities=17%  Similarity=0.094  Sum_probs=20.4

Q ss_pred             eEEEecCCCCChHHHHHHHHHHh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .+.|.|+|||||||++..++...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            36899999999999999998765

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.83  E-value=0.0096  Score=56.00  Aligned_cols=28  Identities=29%  Similarity=0.440  Sum_probs=23.5

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +...-++|+||||+|||+++..++..+.
T Consensus       199 ~~~~~vLL~G~pGtGKT~la~~la~~l~  226 (758)
T 3pxi_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQII  226 (758)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred             CCCCCeEEECCCCCCHHHHHHHHHHHHh
Confidence            3444589999999999999999998863

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=95.82  E-value=0.0062  Score=47.98  Aligned_cols=113  Identities=15%  Similarity=0.048  Sum_probs=57.5

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhc-cccccCCCCCeEEEEe-ccccC---------------c-hHHHHHHHHHHHHH
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQ-IPVEFGGLGGKAIYIG-KCLGF---------------Y-TEQSAVINYLDKFV  135 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~-lp~~~~~~~~~vlyi~-~e~~~---------------~-~~~~~~l~~l~~~l  135 (226)
                      ..+++++|+||+|||++|...+...+ +.+.  ..+.+.+|+. .....               . .+.. ..+.+.++.
T Consensus         5 ~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~--~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~-~~~~~~~~~   81 (199)
T 2r2a_A            5 AEICLITGTPGSGKTLKMVSMMANDEMFKPD--ENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQL-SAHDMYEWI   81 (199)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCGGGSCC--TTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCE-EGGGHHHHT
T ss_pred             eeEEEEEeCCCCCHHHHHHHHHHHHHhhccc--ccCceEEEEecCCCccccccccchhhhhccccCcccc-cHHHHHHHh
Confidence            45899999999999999988765542 1110  1231445433 22100               0 0000 012233332


Q ss_pred             --hhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464          136 --SEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL  196 (226)
Q Consensus       136 --~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~  196 (226)
                        .+ .+..+||||+.+.++....... +.    .+++..|.. -++.+..+|++.|....++
T Consensus        82 ~~~~-~~~~vliIDEAq~l~~~~~~~~-e~----~rll~~l~~-~r~~~~~iil~tq~~~~l~  137 (199)
T 2r2a_A           82 KKPE-NIGSIVIVDEAQDVWPARSAGS-KI----PENVQWLNT-HRHQGIDIFVLTQGPKLLD  137 (199)
T ss_dssp             TSGG-GTTCEEEETTGGGTSBCCCTTC-CC----CHHHHGGGG-TTTTTCEEEEEESCGGGBC
T ss_pred             hccc-cCceEEEEEChhhhccCccccc-hh----HHHHHHHHh-cCcCCeEEEEECCCHHHHh
Confidence              22 2468999999998764321110 00    022333332 2356777777777754443

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.81  E-value=0.067  Score=40.69  Aligned_cols=23  Identities=26%  Similarity=0.225  Sum_probs=20.5

Q ss_pred             EEEecCCCCChHHHHHHHHHHhc
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +.|.|++|+|||+|+..++..-.
T Consensus        26 i~v~G~~~~GKSsli~~l~~~~~   48 (191)
T 3dz8_A           26 LLIIGNSSVGKTSFLFRYADDTF   48 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTT
T ss_pred             EEEECCCCcCHHHHHHHHhcCCC
Confidence            78999999999999999987653

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.77  E-value=0.0062  Score=52.01  Aligned_cols=24  Identities=33%  Similarity=0.379  Sum_probs=22.0

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHh
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .++.|+||+|||||+++..++...
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l   31 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKF   31 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHc
Confidence            489999999999999999999875

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=95.76  E-value=0.0029  Score=49.24  Aligned_cols=33  Identities=18%  Similarity=0.153  Sum_probs=26.9

Q ss_pred             hhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHH
Q 036464           61 ADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAV   96 (226)
Q Consensus        61 ~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~   96 (226)
                      ..++. +.  +++|..+.|.|++|+|||||...++.
T Consensus        16 ~~l~~-~~--~~~~~~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           16 PDIRH-LP--SDTGIEVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             SSGGG-SS--CSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CCHhH-CC--CCCCcEEEEECCCCCCHHHHHHHHhC
Confidence            45555 43  78899999999999999999987764

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=95.75  E-value=0.0083  Score=48.81  Aligned_cols=37  Identities=24%  Similarity=0.341  Sum_probs=30.1

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      .+....+..|+||||++.++|...+      ..+.+|++||..
T Consensus        20 vI~v~s~kGGvGKTT~a~nLA~~la------~~G~~VlliD~D   56 (262)
T 2ph1_A           20 RIAVMSGKGGVGKSTVTALLAVHYA------RQGKKVGILDAD   56 (262)
T ss_dssp             EEEEECSSSCTTHHHHHHHHHHHHH------HTTCCEEEEECC
T ss_pred             EEEEEcCCCCCCHHHHHHHHHHHHH------HCCCeEEEEeCC
Confidence            3445567889999999999999987      467899999954

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.75  E-value=0.007  Score=46.97  Aligned_cols=23  Identities=22%  Similarity=0.432  Sum_probs=21.0

Q ss_pred             eEEEecCCCCChHHHHHHHHHHh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ++.|+|++||||||++..++...
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            78999999999999999998764

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.74  E-value=0.0064  Score=50.33  Aligned_cols=23  Identities=22%  Similarity=0.397  Sum_probs=20.9

Q ss_pred             eeEEEecCCCCChHHHHHHHHHH
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      .++.|.|+|||||||++..++..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999999874

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.73  E-value=0.051  Score=40.41  Aligned_cols=24  Identities=29%  Similarity=0.146  Sum_probs=20.7

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhc
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      -+.+.|++|+|||+|+..++..-.
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~~   40 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEKKF   40 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCC
Confidence            478999999999999999986643

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.71  E-value=0.0066  Score=51.51  Aligned_cols=24  Identities=29%  Similarity=0.335  Sum_probs=22.0

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHh
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .++.|+||+|+|||+++..++...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            479999999999999999999875

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=95.71  E-value=0.012  Score=46.27  Aligned_cols=64  Identities=19%  Similarity=0.184  Sum_probs=43.8

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHH------------HHHHHHhhCCCceE
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVIN------------YLDKFVSEHKDVKV  143 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~------------~l~~~l~~~~~~~l  143 (226)
                      +....+..|+||||++.++|...+      ..+ +|+.||.........  .+.            .+..+ .  ..+++
T Consensus         3 I~v~s~KGGvGKTT~a~~LA~~la------~~g-~VlliD~D~q~~~~~--~~~~~~l~~~vi~~~~l~~l-~--~~yD~   70 (209)
T 3cwq_A            3 ITVASFKGGVGKTTTAVHLSAYLA------LQG-ETLLIDGDPNRSATG--WGKRGSLPFKVVDERQAAKY-A--PKYQN   70 (209)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHH------TTS-CEEEEEECTTCHHHH--HHHHSCCSSEEEEGGGHHHH-G--GGCSE
T ss_pred             EEEEcCCCCCcHHHHHHHHHHHHH------hcC-CEEEEECCCCCCHHH--HhcCCCCCcceeCHHHHHHh-h--hcCCE
Confidence            445568899999999999999987      467 999999763221111  111            12222 2  25899


Q ss_pred             EEEcCCch
Q 036464          144 VIIDSIAF  151 (226)
Q Consensus       144 vVIDsl~~  151 (226)
                      ||||....
T Consensus        71 viiD~p~~   78 (209)
T 3cwq_A           71 IVIDTQAR   78 (209)
T ss_dssp             EEEEEECC
T ss_pred             EEEeCCCC
Confidence            99998775

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.69  E-value=0.0071  Score=51.13  Aligned_cols=25  Identities=28%  Similarity=0.460  Sum_probs=22.3

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHh
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.++.|+||+|+|||+++..++...
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            4588999999999999999998765

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.69  E-value=0.05  Score=41.29  Aligned_cols=23  Identities=22%  Similarity=0.231  Sum_probs=20.1

Q ss_pred             eEEEecCCCCChHHHHHHHHHHh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+.+.|++|+|||+|+..++..-
T Consensus        22 ki~v~G~~~~GKSsli~~l~~~~   44 (189)
T 1z06_A           22 KIIVIGDSNVGKTCLTYRFCAGR   44 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999987654

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=95.69  E-value=0.0081  Score=49.66  Aligned_cols=38  Identities=29%  Similarity=0.296  Sum_probs=31.5

Q ss_pred             CeeEEEec---CCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           74 REVTEIGG---VPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        74 G~i~~i~G---~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      +.++.|++   ..|+||||++.++|...+      ..+.+|+.||..
T Consensus        34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la------~~G~rVlliD~D   74 (298)
T 2oze_A           34 NEAIVILNNYFKGGVGKSKLSTMFAYLTD------KLNLKVLMIDKD   74 (298)
T ss_dssp             CSCEEEEECCSSSSSSHHHHHHHHHHHHH------HTTCCEEEEEEC
T ss_pred             CcEEEEEeccCCCCchHHHHHHHHHHHHH------hCCCeEEEEeCC
Confidence            45666665   899999999999999887      468899999954

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=95.67  E-value=0.049  Score=53.21  Aligned_cols=41  Identities=20%  Similarity=0.312  Sum_probs=29.6

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK  116 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~  116 (226)
                      ...++.|+|++|+|||+||.+++.....-.   ..+.+++|++.
T Consensus       149 ~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~---~Fd~gV~WVsV  189 (1221)
T 1vt4_I          149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQC---KMDFKIFWLNL  189 (1221)
T ss_dssp             SSCEEEECCSTTSSHHHHHHHHHHHCHHHH---HHSSCEEEEEC
T ss_pred             CCeEEEEEcCCCccHHHHHHHHHHhhHHHH---hCCCcEEEEEe
Confidence            357999999999999999999986421100   12346888874

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=95.67  E-value=0.0095  Score=47.96  Aligned_cols=37  Identities=24%  Similarity=0.396  Sum_probs=30.3

Q ss_pred             eeEEE-ecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           75 EVTEI-GGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        75 ~i~~i-~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      .++.+ .+..|+||||++.++|...+      ..+.+|+.||..
T Consensus         3 ~vi~v~s~kgGvGKTt~a~~LA~~la------~~g~~VlliD~D   40 (260)
T 3q9l_A            3 RIIVVTSGKGGVGKTTSSAAIATGLA------QKGKKTVVIDFA   40 (260)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHH------HTTCCEEEEECC
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHH------hCCCcEEEEECC
Confidence            34444 66789999999999999987      468899999965

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=95.66  E-value=0.0042  Score=51.99  Aligned_cols=35  Identities=14%  Similarity=0.341  Sum_probs=27.3

Q ss_pred             hHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           62 DLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        62 ~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .+|.++.  +..|.++.|.|+||+|||||+..++...
T Consensus       159 gv~~lf~--~l~geiv~l~G~sG~GKSTll~~l~g~~  193 (301)
T 1u0l_A          159 GIEELKE--YLKGKISTMAGLSGVGKSSLLNAINPGL  193 (301)
T ss_dssp             THHHHHH--HHSSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CHHHHHH--HhcCCeEEEECCCCCcHHHHHHHhcccc
Confidence            3555553  4568999999999999999998776543

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=95.66  E-value=0.0045  Score=52.02  Aligned_cols=25  Identities=32%  Similarity=0.335  Sum_probs=22.0

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHh
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      |.-+.|+||||+|||+++..++...
T Consensus        46 ~~~vll~G~pGtGKT~la~~la~~~   70 (331)
T 2r44_A           46 GGHILLEGVPGLAKTLSVNTLAKTM   70 (331)
T ss_dssp             TCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHh
Confidence            4568999999999999999998765

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.65  E-value=0.042  Score=41.36  Aligned_cols=23  Identities=39%  Similarity=0.505  Sum_probs=20.0

Q ss_pred             eEEEecCCCCChHHHHHHHHHHh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+.+.|++|+|||+|+..+....
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            36899999999999999998654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=95.65  E-value=0.0016  Score=54.91  Aligned_cols=33  Identities=24%  Similarity=0.311  Sum_probs=25.6

Q ss_pred             HHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           63 LDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        63 LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      +|.++.  +.+|+++.|.|+||+|||||+..++..
T Consensus       164 ~~~L~~--~~~G~~~~lvG~sG~GKSTLln~L~g~  196 (307)
T 1t9h_A          164 LADIIP--HFQDKTTVFAGQSGVGKSSLLNAISPE  196 (307)
T ss_dssp             CTTTGG--GGTTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred             HHHHHh--hcCCCEEEEECCCCCCHHHHHHHhccc
Confidence            344443  567899999999999999999877644

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.63  E-value=0.0089  Score=50.44  Aligned_cols=25  Identities=28%  Similarity=0.292  Sum_probs=22.6

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHh
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ..++.|+||+|+|||+|+..++...
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC
Confidence            4689999999999999999999875

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=95.63  E-value=0.0073  Score=48.98  Aligned_cols=38  Identities=24%  Similarity=0.347  Sum_probs=31.4

Q ss_pred             CeeEEEe-cCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           74 REVTEIG-GVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        74 G~i~~i~-G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      +.++.++ +..|+||||++.++|...+      ..+.+|++||..
T Consensus         6 ~~vI~v~s~kGGvGKTt~a~~LA~~la------~~g~~VlliD~D   44 (257)
T 1wcv_1            6 VRRIALANQKGGVGKTTTAINLAAYLA------RLGKRVLLVDLD   44 (257)
T ss_dssp             CCEEEECCSSCCHHHHHHHHHHHHHHH------HTTCCEEEEECC
T ss_pred             CEEEEEEeCCCCchHHHHHHHHHHHHH------HCCCCEEEEECC
Confidence            4566665 6789999999999999987      468899999955

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=95.59  E-value=0.0066  Score=55.84  Aligned_cols=24  Identities=21%  Similarity=0.223  Sum_probs=19.3

Q ss_pred             EEEecCCCCChHHHHHHHHHHhccc
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQIP  101 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~lp  101 (226)
                      +.|+|++|+|||||+..++.. ..|
T Consensus        48 iaIvG~nGsGKSTLL~~I~Gl-~~P   71 (608)
T 3szr_A           48 IAVIGDQSSGKSSVLEALSGV-ALP   71 (608)
T ss_dssp             EECCCCTTSCHHHHHHHHHSC-C--
T ss_pred             EEEECCCCChHHHHHHHHhCC-CCC
Confidence            899999999999999887764 334

>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19

Probab=95.59  E-value=0.043  Score=42.94  Aligned_cols=75  Identities=11%  Similarity=0.113  Sum_probs=48.3

Q ss_pred             CCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEec
Q 036464            2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGG   81 (226)
Q Consensus         2 ~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G   81 (226)
                      .+++++|++.+++.|.+.||.....        .++   .                    .++.++.|     .-+.+.+
T Consensus        15 ~f~~~~l~~~l~~~l~~~g~~~~~~--------~Q~---~--------------------~i~~~~~~-----~~~li~~   58 (220)
T 1t6n_A           15 GFRDFLLKPELLRAIVDCGFEHPSE--------VQH---E--------------------CIPQAILG-----MDVLCQA   58 (220)
T ss_dssp             CSTTSCCCHHHHHHHHHTTCCCCCH--------HHH---H--------------------HHHHHHTT-----CCEEEEC
T ss_pred             CHhhcCCCHHHHHHHHHCCCCCCCH--------HHH---H--------------------HHHHHhCC-----CCEEEEC
Confidence            4678889999999999999875222        211   1                    12223332     3378999


Q ss_pred             CCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           82 VPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        82 ~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      |+|+|||..+...+.....+   ...+.+++|+.
T Consensus        59 ~TGsGKT~~~~~~~~~~~~~---~~~~~~~lil~   89 (220)
T 1t6n_A           59 KSGMGKTAVFVLATLQQLEP---VTGQVSVLVMC   89 (220)
T ss_dssp             CTTSCHHHHHHHHHHHHCCC---CTTCCCEEEEC
T ss_pred             CCCCchhhhhhHHHHHhhhc---cCCCEEEEEEe
Confidence            99999998776666655421   11234788886

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=95.58  E-value=0.0092  Score=54.75  Aligned_cols=29  Identities=28%  Similarity=0.378  Sum_probs=24.5

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +..|..+.|.||||+|||+++..++....
T Consensus        57 i~~g~~vll~Gp~GtGKTtlar~ia~~l~   85 (604)
T 3k1j_A           57 ANQKRHVLLIGEPGTGKSMLGQAMAELLP   85 (604)
T ss_dssp             HHTTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred             ccCCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence            34567999999999999999999988653

>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A

Probab=95.57  E-value=0.043  Score=48.05  Aligned_cols=37  Identities=27%  Similarity=0.256  Sum_probs=26.1

Q ss_pred             CCeeEEEecCCCCChHHHH-HHHHHHhccccccCCCCCeEEEEe
Q 036464           73 CREVTEIGGVPGIGKTQLG-IQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~-~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      +|+.++++||+|+|||..+ ..++..+.      ..+.+++|+.
T Consensus         1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~------~~g~~~lvl~   38 (431)
T 2v6i_A            1 KRELTVLDLHPGAGKTRRVLPQLVREAV------KKRLRTVILA   38 (431)
T ss_dssp             -CCEEEEECCTTSCTTTTHHHHHHHHHH------HTTCCEEEEE
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHH------hCCCCEEEEC
Confidence            3678999999999999986 44443433      2455788876

>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19

Probab=95.57  E-value=0.022  Score=44.72  Aligned_cols=75  Identities=15%  Similarity=0.155  Sum_probs=47.5

Q ss_pred             CCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEec
Q 036464            2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGG   81 (226)
Q Consensus         2 ~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G   81 (226)
                      .+++++|++.+++.|++.||....        +.++   .|+                    +.++.|     .-+.+.+
T Consensus         5 ~f~~~~l~~~l~~~l~~~g~~~~~--------~~Q~---~~i--------------------~~~~~~-----~~~lv~a   48 (219)
T 1q0u_A            5 QFTRFPFQPFIIEAIKTLRFYKPT--------EIQE---RII--------------------PGALRG-----ESMVGQS   48 (219)
T ss_dssp             CGGGSCCCHHHHHHHHHTTCCSCC--------HHHH---HHH--------------------HHHHHT-----CCEEEEC
T ss_pred             CHhhCCCCHHHHHHHHHCCCCCCC--------HHHH---HHH--------------------HHHhCC-----CCEEEEC
Confidence            456788999999999999987532        2211   111                    222222     3468999


Q ss_pred             CCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           82 VPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        82 ~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      |+|+|||......+......   ...+.+++|+.
T Consensus        49 ~TGsGKT~~~~~~~l~~l~~---~~~~~~~lil~   79 (219)
T 1q0u_A           49 QTGTGKTHAYLLPIMEKIKP---ERAEVQAVITA   79 (219)
T ss_dssp             CSSHHHHHHHHHHHHHHCCT---TSCSCCEEEEC
T ss_pred             CCCChHHHHHHHHHHHHHHh---CcCCceEEEEc
Confidence            99999998755555444321   12345788887

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.57  E-value=0.027  Score=42.85  Aligned_cols=24  Identities=25%  Similarity=0.295  Sum_probs=20.6

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhc
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      -+.|.|++|+|||+|+..++..-.
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~~~   41 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADDTY   41 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCCC
Confidence            478999999999999999886543

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.54  E-value=0.0093  Score=46.63  Aligned_cols=25  Identities=24%  Similarity=0.246  Sum_probs=22.0

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHH
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      .-.++.|+|.+||||||++..++..
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHh
Confidence            3468899999999999999998876

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=95.52  E-value=0.0079  Score=48.40  Aligned_cols=30  Identities=20%  Similarity=0.242  Sum_probs=22.1

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      -..+|.++.|.|++|+||||++..++....
T Consensus        21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           21 SMARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             --CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             cccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            346789999999999999999999887763

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=95.50  E-value=0.012  Score=47.53  Aligned_cols=31  Identities=19%  Similarity=0.185  Sum_probs=24.3

Q ss_pred             CCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +.-.+|.++.|.|++|+||||++..++....
T Consensus        22 ~~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           22 SNAMNAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             ----CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             cCCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4445688999999999999999999887764

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.50  E-value=0.009  Score=49.41  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=20.7

Q ss_pred             CeeEEEecCCCCChHHHHHHHHH
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAV   96 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~   96 (226)
                      ..++.|+|++||||||++..++.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999883

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=95.49  E-value=0.005  Score=51.87  Aligned_cols=23  Identities=26%  Similarity=0.193  Sum_probs=20.9

Q ss_pred             EEEecCCCCChHHHHHHHHHHhc
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +.|+||||+|||+++..++....
T Consensus        48 vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           48 VLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSC
T ss_pred             EEEECCCCccHHHHHHHHHHhCc
Confidence            89999999999999999988653

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.48  E-value=0.01  Score=45.89  Aligned_cols=24  Identities=29%  Similarity=0.383  Sum_probs=21.6

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHH
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      |.-++|.|++|+|||++++.+...
T Consensus        16 G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            567999999999999999998875

>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}

Probab=95.46  E-value=0.028  Score=49.13  Aligned_cols=77  Identities=13%  Similarity=0.114  Sum_probs=44.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEecC
Q 036464            3 VSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV   82 (226)
Q Consensus         3 ~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~   82 (226)
                      .++++|++.+++.|++.||...        ..+++   .|                    +..++.     |.-+.+.++
T Consensus        58 f~~~~l~~~l~~~l~~~g~~~p--------t~iQ~---~a--------------------i~~i~~-----g~d~i~~a~  101 (434)
T 2db3_A           58 FTSADLRDIIIDNVNKSGYKIP--------TPIQK---CS--------------------IPVISS-----GRDLMACAQ  101 (434)
T ss_dssp             GGGSCCCHHHHHHHHHTTCCSC--------CHHHH---HH--------------------HHHHHT-----TCCEEEECC
T ss_pred             hhhcCCCHHHHHHHHHcCCCCC--------CHHHH---HH--------------------HHHHhc-----CCCEEEECC
Confidence            4567899999999999998742        22211   11                    122332     345899999


Q ss_pred             CCCChHHHHHH-HHHHhcc-ccccCCCCCeEEEEe
Q 036464           83 PGIGKTQLGIQ-LAVNVQI-PVEFGGLGGKAIYIG  115 (226)
Q Consensus        83 ~GsGKT~l~~~-la~~~~l-p~~~~~~~~~vlyi~  115 (226)
                      +|+|||...+- +...+.. +......+.+++++.
T Consensus       102 TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~  136 (434)
T 2db3_A          102 TGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVS  136 (434)
T ss_dssp             TTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEEC
T ss_pred             CCCCchHHHHHHHHHHHHhcccccccCCccEEEEe
Confidence            99999985433 2222221 100112345788886

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.43  E-value=0.074  Score=40.66  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=20.0

Q ss_pred             eEEEecCCCCChHHHHHHHHHHh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+.|.|++|+|||+|+..+...-
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~~   38 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYDE   38 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            47899999999999999988654

>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}

Probab=95.41  E-value=0.031  Score=44.34  Aligned_cols=78  Identities=18%  Similarity=0.157  Sum_probs=44.3

Q ss_pred             CCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEec
Q 036464            2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGG   81 (226)
Q Consensus         2 ~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G   81 (226)
                      +.++++|++.+.+.|.+.||....+        .++   .                    .+..++.     |.-+.+.+
T Consensus        26 ~f~~~~l~~~l~~~l~~~~~~~~~~--------~Q~---~--------------------~i~~~~~-----~~~~li~a   69 (236)
T 2pl3_A           26 RFSDFPLSKKTLKGLQEAQYRLVTE--------IQK---Q--------------------TIGLALQ-----GKDVLGAA   69 (236)
T ss_dssp             BGGGSCCCHHHHHHHHHTTCCBCCH--------HHH---H--------------------HHHHHHT-----TCCEEEEC
T ss_pred             CHhhcCCCHHHHHHHHHCCCCCCCH--------HHH---H--------------------HHHHHhC-----CCCEEEEe
Confidence            3566778888888888888765322        111   1                    1222333     24488999


Q ss_pred             CCCCChHHHHHHHHHHhccccc-cCCCCCeEEEEe
Q 036464           82 VPGIGKTQLGIQLAVNVQIPVE-FGGLGGKAIYIG  115 (226)
Q Consensus        82 ~~GsGKT~l~~~la~~~~lp~~-~~~~~~~vlyi~  115 (226)
                      |+|+|||......+........ ....+.+++|+.
T Consensus        70 ~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~  104 (236)
T 2pl3_A           70 KTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIIS  104 (236)
T ss_dssp             CTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEEC
T ss_pred             CCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEe
Confidence            9999999865443333221000 012345788876

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=95.40  E-value=0.01  Score=48.93  Aligned_cols=24  Identities=25%  Similarity=0.238  Sum_probs=20.6

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhc
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      .+.|.||+|+|||||+..++....
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~   27 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQV   27 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            478999999999999998887653

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.39  E-value=0.013  Score=43.77  Aligned_cols=23  Identities=30%  Similarity=0.306  Sum_probs=19.7

Q ss_pred             eeEEEecCCCCChHHHHHHHHHH
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      .++.|+||+|+|||++.-.+...
T Consensus        24 g~~~I~G~NGsGKStil~Ai~~~   46 (149)
T 1f2t_A           24 GINLIIGQNGSGKSSLLDAILVG   46 (149)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999998776653

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=95.39  E-value=0.014  Score=46.02  Aligned_cols=33  Identities=18%  Similarity=0.105  Sum_probs=27.3

Q ss_pred             EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      ....+.+|+|||+++.++|...+      ..|.+|++++
T Consensus         5 ~v~s~kgGvGKTt~a~nLa~~la------~~G~rVll~d   37 (224)
T 1byi_A            5 FVTGTDTEVGKTVASCALLQAAK------AAGYRTAGYK   37 (224)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHHH------HTTCCEEEEC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHH------HCCCCEEEEc
Confidence            34444689999999999999987      4688999987

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.36  E-value=0.022  Score=44.61  Aligned_cols=24  Identities=29%  Similarity=0.237  Sum_probs=21.6

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHh
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ..+.|+|++|+|||+|+..++...
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999875

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=95.36  E-value=0.0056  Score=47.04  Aligned_cols=25  Identities=24%  Similarity=0.251  Sum_probs=21.9

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhc
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      .++.|+|++|+|||||+..++....
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh
Confidence            4789999999999999998887764

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.35  E-value=0.0096  Score=51.22  Aligned_cols=44  Identities=14%  Similarity=0.059  Sum_probs=31.0

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++++|++++.++.     ..    ...++..|+++. +.|.+||++.|-..
T Consensus       303 ~p~~lllDEpt~~LD~-----~~----~~~~~~~l~~l~-~~g~tvi~itH~~~  346 (365)
T 3qf7_A          303 RLDAFFIDEGFSSLDT-----EN----KEKIASVLKELE-RLNKVIVFITHDRE  346 (365)
T ss_dssp             TCCEEEEESCCTTSCH-----HH----HHHHHHHHHGGG-GSSSEEEEEESCHH
T ss_pred             CCCEEEEeCCCccCCH-----HH----HHHHHHHHHHHH-hCCCEEEEEecchH
Confidence            6899999999976633     11    235566667765 45899998888754

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=95.35  E-value=0.016  Score=51.23  Aligned_cols=26  Identities=31%  Similarity=0.477  Sum_probs=22.8

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHH
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLA   95 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la   95 (226)
                      ..+...++.|.|+||+|||++..+++
T Consensus       157 ~~~~~~v~~I~G~aGsGKTt~I~~~~  182 (446)
T 3vkw_A          157 HVSSAKVVLVDGVPGCGKTKEILSRV  182 (446)
T ss_dssp             CCCCSEEEEEEECTTSCHHHHHHHHC
T ss_pred             ccccccEEEEEcCCCCCHHHHHHHHh
Confidence            35778899999999999999998765

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=95.32  E-value=0.011  Score=52.95  Aligned_cols=27  Identities=22%  Similarity=0.258  Sum_probs=24.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++ +++.|.||+|+|||||+..++...
T Consensus        27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~   53 (483)
T 3euj_A           27 FDE-LVTTLSGGNGAGKSTTMAGFVTAL   53 (483)
T ss_dssp             CCS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             Ecc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence            678 999999999999999998887654

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=95.32  E-value=0.0058  Score=53.62  Aligned_cols=23  Identities=22%  Similarity=0.160  Sum_probs=20.3

Q ss_pred             CeeEEEecCCCCChHHHHHHHHH
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAV   96 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~   96 (226)
                      +.++.|.|+||+|||||+..++.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~G   91 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRG   91 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHhC
Confidence            33999999999999999988775

>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}

Probab=95.32  E-value=0.044  Score=44.14  Aligned_cols=75  Identities=15%  Similarity=-0.008  Sum_probs=45.4

Q ss_pred             CCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEec
Q 036464            2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGG   81 (226)
Q Consensus         2 ~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G   81 (226)
                      ++++|+|++.+.+.|++.||....+        .++   .                    .++.++.     |.-+.+.+
T Consensus        44 ~f~~l~l~~~l~~~l~~~g~~~~~~--------~Q~---~--------------------~i~~i~~-----~~~~lv~a   87 (249)
T 3ber_A           44 TFKDLGVTDVLCEACDQLGWTKPTK--------IQI---E--------------------AIPLALQ-----GRDIIGLA   87 (249)
T ss_dssp             CTGGGTCCHHHHHHHHHTTCCSCCH--------HHH---H--------------------HHHHHHT-----TCCEEEEC
T ss_pred             CHHHcCCCHHHHHHHHHcCCCCCCH--------HHH---H--------------------HHHHHhC-----CCCEEEEc
Confidence            3567788888888888888765222        211   1                    1222333     24588999


Q ss_pred             CCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           82 VPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        82 ~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      |+|+|||......+......   ...+.+++|+.
T Consensus        88 ~TGsGKT~~~~~~il~~l~~---~~~~~~~lil~  118 (249)
T 3ber_A           88 ETGSGKTGAFALPILNALLE---TPQRLFALVLT  118 (249)
T ss_dssp             CTTSCHHHHHHHHHHHHHHH---SCCSSCEEEEC
T ss_pred             CCCCCchhHhHHHHHHHHhc---CCCCceEEEEe
Confidence            99999998755444443221   12345688876

>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A

Probab=95.30  E-value=0.034  Score=47.45  Aligned_cols=75  Identities=16%  Similarity=0.087  Sum_probs=47.5

Q ss_pred             CCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEec
Q 036464            2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGG   81 (226)
Q Consensus         2 ~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G   81 (226)
                      .+++|+|++.+.+.|.+.||.+...        .++   .|+                    +.++.|     .-+.+.+
T Consensus        22 ~f~~~~l~~~l~~~l~~~g~~~~~~--------~Q~---~~i--------------------~~i~~~-----~~~li~a   65 (400)
T 1s2m_A           22 TFEDFYLKRELLMGIFEAGFEKPSP--------IQE---EAI--------------------PVAITG-----RDILARA   65 (400)
T ss_dssp             CGGGGCCCHHHHHHHHHTTCCSCCH--------HHH---HHH--------------------HHHHHT-----CCEEEEC
T ss_pred             ChhhcCCCHHHHHHHHHCCCCCCCH--------HHH---HHH--------------------HHHhcC-----CCEEEEC
Confidence            4677889999999999988874222        211   111                    222322     3378999


Q ss_pred             CCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           82 VPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        82 ~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      |+|+|||..+...+.....+   ...+.+++|+.
T Consensus        66 ~TGsGKT~~~~~~~~~~~~~---~~~~~~~lil~   96 (400)
T 1s2m_A           66 KNGTGKTAAFVIPTLEKVKP---KLNKIQALIMV   96 (400)
T ss_dssp             CTTSCHHHHHHHHHHHHCCT---TSCSCCEEEEC
T ss_pred             CCCcHHHHHHHHHHHHHHhh---ccCCccEEEEc
Confidence            99999998776666555421   11345788887

>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A

Probab=95.30  E-value=0.037  Score=43.41  Aligned_cols=74  Identities=15%  Similarity=0.142  Sum_probs=45.0

Q ss_pred             CCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEecC
Q 036464            3 VSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV   82 (226)
Q Consensus         3 ~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~   82 (226)
                      .++++|++.+.+.|.+.||....+        .++   .                    .++.++.|     .-+.+.+|
T Consensus        16 f~~l~l~~~l~~~l~~~g~~~~~~--------~Q~---~--------------------~i~~~~~~-----~~~lv~~p   59 (224)
T 1qde_A           16 FDDMELDENLLRGVFGYGFEEPSA--------IQQ---R--------------------AIMPIIEG-----HDVLAQAQ   59 (224)
T ss_dssp             GGGGTCCHHHHHHHHHHTCCSCCH--------HHH---H--------------------HHHHHHTT-----CCEEEECC
T ss_pred             hhhcCCCHHHHHHHHHCCCCCCcH--------HHH---H--------------------HHHHHhcC-----CCEEEECC
Confidence            567888999999999888865222        111   1                    12223332     34899999


Q ss_pred             CCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        83 ~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      +|+|||....-.+......   ...+.+++|+.
T Consensus        60 TGsGKT~~~~~~~l~~l~~---~~~~~~~lil~   89 (224)
T 1qde_A           60 SGTGKTGTFSIAALQRIDT---SVKAPQALMLA   89 (224)
T ss_dssp             TTSSHHHHHHHHHHHHCCT---TCCSCCEEEEC
T ss_pred             CCCcHHHHHHHHHHHHHhc---cCCCceEEEEE
Confidence            9999997744333333211   12345788886

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=95.30  E-value=0.011  Score=47.52  Aligned_cols=28  Identities=25%  Similarity=0.240  Sum_probs=24.6

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      .+|.++.|.|++|+||||++..++....
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4688999999999999999998887654

>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A

Probab=95.29  E-value=0.11  Score=43.96  Aligned_cols=75  Identities=9%  Similarity=0.090  Sum_probs=48.4

Q ss_pred             CCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEec
Q 036464            2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGG   81 (226)
Q Consensus         2 ~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G   81 (226)
                      ++++++|++.+.+.|.+.||....        ..++   .                    .++.++.     |.-+.+.+
T Consensus         9 ~f~~~~l~~~l~~~l~~~g~~~~~--------~~Q~---~--------------------~i~~~~~-----~~~~lv~a   52 (391)
T 1xti_A            9 GFRDFLLKPELLRAIVDCGFEHPS--------EVQH---E--------------------CIPQAIL-----GMDVLCQA   52 (391)
T ss_dssp             CGGGGCCCHHHHHHHHHHSCCSCC--------HHHH---H--------------------HHHHHTT-----TCCEEEEC
T ss_pred             ChhhcCCCHHHHHHHHHCCCCCCC--------HHHH---H--------------------HHHHHhc-----CCcEEEEC
Confidence            567889999999999999986422        2211   1                    1222332     24488999


Q ss_pred             CCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           82 VPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        82 ~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      |+|+|||..+...+......   ...+.+++|+.
T Consensus        53 ~TGsGKT~~~~~~~~~~l~~---~~~~~~~lil~   83 (391)
T 1xti_A           53 KSGMGKTAVFVLATLQQLEP---VTGQVSVLVMC   83 (391)
T ss_dssp             SSCSSHHHHHHHHHHHHCCC---CTTCCCEEEEC
T ss_pred             CCCCcHHHHHHHHHHHhhcc---cCCCeeEEEEC
Confidence            99999998776666555421   12345788886

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=95.27  E-value=0.13  Score=40.06  Aligned_cols=34  Identities=26%  Similarity=0.281  Sum_probs=27.1

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      ++.|-|.-||||||.+..++....      ..+.+|++..
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~------~~g~~v~~tr   35 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLE------KRGKKVILKR   35 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH------HCCCcEEEEE
Confidence            578899999999999988887764      3566777664

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=95.27  E-value=0.012  Score=51.97  Aligned_cols=24  Identities=29%  Similarity=0.361  Sum_probs=21.4

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhc
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      -++++||||+|||+++..+|...-
T Consensus        52 ~iLl~GppGtGKT~lar~lA~~l~   75 (444)
T 1g41_A           52 NILMIGPTGVGKTEIARRLAKLAN   75 (444)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHcC
Confidence            388999999999999999998764

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=95.26  E-value=0.018  Score=53.02  Aligned_cols=37  Identities=24%  Similarity=0.358  Sum_probs=28.9

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      +.++.|.||||+|||+++..++.....     ..+.+++.+.
T Consensus       195 ~~~~li~GppGTGKT~~~~~~i~~l~~-----~~~~~ilv~a  231 (624)
T 2gk6_A          195 RPLSLIQGPPGTGKTVTSATIVYHLAR-----QGNGPVLVCA  231 (624)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHHT-----SSSCCEEEEE
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHHHHH-----cCCCeEEEEe
Confidence            458899999999999999988877651     1456777766

>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}

Probab=95.25  E-value=0.22  Score=45.00  Aligned_cols=43  Identities=16%  Similarity=-0.021  Sum_probs=25.7

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccc-cCCCCCeEEEEe
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVE-FGGLGGKAIYIG  115 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~-~~~~~~~vlyi~  115 (226)
                      .|.-+.+.+|+|+|||....-.+........ ....+.+++++.
T Consensus        59 ~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~  102 (579)
T 3sqw_A           59 EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVA  102 (579)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEEC
T ss_pred             CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEc
Confidence            4678899999999999754333333221110 112235788887

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.25  E-value=0.013  Score=46.92  Aligned_cols=25  Identities=20%  Similarity=0.183  Sum_probs=22.8

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHh
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      |.++.|.|.+|+||||++..++...
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHc
Confidence            6789999999999999999998875

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=95.24  E-value=0.013  Score=44.37  Aligned_cols=25  Identities=32%  Similarity=0.267  Sum_probs=21.5

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHH
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      +|.-+.|.|+||+|||+|...++..
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            5677899999999999999998864

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.23  E-value=0.013  Score=50.27  Aligned_cols=29  Identities=21%  Similarity=0.247  Sum_probs=23.4

Q ss_pred             CCCee--EEEecCCCCChHHHHHHHHHHhcc
Q 036464           72 GCREV--TEIGGVPGIGKTQLGIQLAVNVQI  100 (226)
Q Consensus        72 ~~G~i--~~i~G~~GsGKT~l~~~la~~~~l  100 (226)
                      ++|..  +.|.|+||+||||++..++.....
T Consensus        20 ~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~   50 (359)
T 2ga8_A           20 EDNYRVCVILVGSPGSGKSTIAEELCQIINE   50 (359)
T ss_dssp             TTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             ccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence            44555  899999999999999988876543

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=95.20  E-value=0.018  Score=45.77  Aligned_cols=27  Identities=22%  Similarity=0.272  Sum_probs=23.8

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +|.++.|.|++|+||||.+..++....
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999998887764

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=95.20  E-value=0.079  Score=50.04  Aligned_cols=41  Identities=17%  Similarity=0.099  Sum_probs=27.4

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      ..|+.+.++||+|+|||+++-.++.......   +.+..++++.
T Consensus       107 ~~~~~vii~gpTGSGKTtllp~ll~~~~~~~---~~g~~ilvl~  147 (773)
T 2xau_A          107 QNNQIMVFVGETGSGKTTQIPQFVLFDEMPH---LENTQVACTQ  147 (773)
T ss_dssp             HHCSEEEEECCTTSSHHHHHHHHHHHHHCGG---GGTCEEEEEE
T ss_pred             hCCCeEEEECCCCCCHHHHHHHHHHHhcccc---CCCceEEecC
Confidence            3468999999999999997766655433210   1134577665

>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}

Probab=95.17  E-value=0.047  Score=48.08  Aligned_cols=78  Identities=14%  Similarity=0.138  Sum_probs=49.0

Q ss_pred             CCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEec
Q 036464            2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGG   81 (226)
Q Consensus         2 ~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G   81 (226)
                      +++.++|++.+++.|.+.||.....        +++   .                    .+..++.|   .+.-+++.+
T Consensus        93 ~f~~~~l~~~l~~~l~~~g~~~p~~--------~Q~---~--------------------ai~~il~~---~~~~~l~~a  138 (479)
T 3fmp_B           93 SFEELRLKPQLLQGVYAMGFNRPSK--------IQE---N--------------------ALPLMLAE---PPQNLIAQS  138 (479)
T ss_dssp             CSGGGTCCHHHHHHHHHTTCCSCCH--------HHH---H--------------------HHHHHTSB---SCCEEEEEC
T ss_pred             CHHHcCCCHHHHHHHHHcCCCCCCH--------HHH---H--------------------HHHHHHcC---CCCcEEEEc
Confidence            3566778999999999999875222        211   1                    12333432   357899999


Q ss_pred             CCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464           82 VPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK  116 (226)
Q Consensus        82 ~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~  116 (226)
                      |+|+|||......+......   +..+.+++|+.-
T Consensus       139 ~TGsGKT~~~~l~il~~l~~---~~~~~~~lil~P  170 (479)
T 3fmp_B          139 QSGTGKTAAFVLAMLSQVEP---ANKYPQCLCLSP  170 (479)
T ss_dssp             CSSSSHHHHHHHHHHTTCCT---TSCSCCEEEECS
T ss_pred             CCCCchhHHHHHHHHHHHhh---cCCCCcEEEEeC
Confidence            99999998765555444321   122337888863

>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*

Probab=95.15  E-value=0.05  Score=43.06  Aligned_cols=75  Identities=17%  Similarity=0.145  Sum_probs=44.8

Q ss_pred             CCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEec
Q 036464            2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGG   81 (226)
Q Consensus         2 ~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G   81 (226)
                      .+++|+|++.+.+.|.+.||....+        .++   .+                    ++.++.     |.-+.+.+
T Consensus        25 ~f~~l~l~~~l~~~l~~~g~~~~~~--------~Q~---~~--------------------i~~~~~-----~~~~l~~a   68 (230)
T 2oxc_A           25 DFESLLLSRPVLEGLRAAGFERPSP--------VQL---KA--------------------IPLGRC-----GLDLIVQA   68 (230)
T ss_dssp             CGGGGTCCHHHHHHHHHTTCCSCCH--------HHH---HH--------------------HHHHHT-----TCCEEEEC
T ss_pred             CHhhcCCCHHHHHHHHHCCCCCCCH--------HHH---HH--------------------HHHHhC-----CCCEEEEC
Confidence            3567788888888888888864222        211   11                    122332     24478999


Q ss_pred             CCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           82 VPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        82 ~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      |+|+|||....-.+......   ...+.+++|+.
T Consensus        69 ~TGsGKT~~~~l~~l~~l~~---~~~~~~~lil~   99 (230)
T 2oxc_A           69 KSGTGKTCVFSTIALDSLVL---ENLSTQILILA   99 (230)
T ss_dssp             CTTSSHHHHHHHHHHHHCCT---TSCSCCEEEEC
T ss_pred             CCCCcHHHHHHHHHHHHHHh---cCCCceEEEEe
Confidence            99999997644333333211   12346788887

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=95.12  E-value=0.015  Score=50.86  Aligned_cols=25  Identities=48%  Similarity=0.755  Sum_probs=22.3

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHh
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ..++.|+||+|+|||+|+..++...
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~   26 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKF   26 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHC
Confidence            3578999999999999999999876

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=95.12  E-value=0.0063  Score=58.80  Aligned_cols=28  Identities=21%  Similarity=0.169  Sum_probs=25.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|.||+|+|||||+..++...
T Consensus       696 I~~GeivaIiGpNGSGKSTLLklLaGll  723 (986)
T 2iw3_A          696 CSLSSRIAVIGPNGAGKSTLINVLTGEL  723 (986)
T ss_dssp             EETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999998877654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=95.12  E-value=0.012  Score=45.37  Aligned_cols=23  Identities=26%  Similarity=0.325  Sum_probs=20.5

Q ss_pred             eEEEecCCCCChHHHHHHHHHHh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .+.|.|++|+|||+|+..++...
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            68999999999999999988754

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=95.10  E-value=0.013  Score=45.33  Aligned_cols=23  Identities=26%  Similarity=0.325  Sum_probs=20.1

Q ss_pred             eEEEecCCCCChHHHHHHHHHHh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+.|.|++|+|||+|+..++...
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47899999999999999988753

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.09  E-value=0.013  Score=49.43  Aligned_cols=25  Identities=32%  Similarity=0.326  Sum_probs=21.7

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAV   96 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~   96 (226)
                      +.+| ++.|+|++|+|||+++-.+..
T Consensus        22 ~~~g-~~~i~G~NGsGKS~ll~ai~~   46 (322)
T 1e69_A           22 FSDR-VTAIVGPNGSGKSNIIDAIKW   46 (322)
T ss_dssp             CCSS-EEEEECCTTTCSTHHHHHHHH
T ss_pred             cCCC-cEEEECCCCCcHHHHHHHHHH
Confidence            5567 999999999999999987764

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=95.05  E-value=0.019  Score=53.02  Aligned_cols=39  Identities=18%  Similarity=0.153  Sum_probs=31.3

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      +|.++.|+|.|||||||++..++....      ..+.+++++|.+
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~------~~G~~~v~lDgD   89 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLV------CHGIPCYTLDGD   89 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEESHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHH------hcCCeEEEechH
Confidence            678999999999999999999988763      235567777644

>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*

Probab=95.05  E-value=0.028  Score=44.85  Aligned_cols=74  Identities=12%  Similarity=0.065  Sum_probs=44.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEecC
Q 036464            3 VSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV   82 (226)
Q Consensus         3 ~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~   82 (226)
                      .++|+|++.+++.|.+.||....+        .++   .                    .++.++.|     .-+.+.+|
T Consensus        32 f~~l~l~~~l~~~l~~~g~~~~~~--------~Q~---~--------------------ai~~i~~~-----~~~li~ap   75 (237)
T 3bor_A           32 FDDMNLKESLLRGIYAYGFEKPSA--------IQQ---R--------------------AIIPCIKG-----YDVIAQAQ   75 (237)
T ss_dssp             GGGSCCCHHHHHHHHHHTCCSCCH--------HHH---H--------------------HHHHHHTT-----CCEEECCC
T ss_pred             hhhcCCCHHHHHHHHHCCCCCCCH--------HHH---H--------------------HHHHHhCC-----CCEEEECC
Confidence            567788888888888888764222        111   1                    12223332     34789999


Q ss_pred             CCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        83 ~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      +|+|||......+......   ...+.+++|+.
T Consensus        76 TGsGKT~~~~l~~l~~l~~---~~~~~~~lil~  105 (237)
T 3bor_A           76 SGTGKTATFAISILQQLEI---EFKETQALVLA  105 (237)
T ss_dssp             SSHHHHHHHHHHHHHHCCT---TSCSCCEEEEC
T ss_pred             CCCcHHHHHHHHHHHHHHh---cCCCceEEEEE
Confidence            9999997755444444311   12345788887

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.05  E-value=0.029  Score=44.05  Aligned_cols=25  Identities=32%  Similarity=0.288  Sum_probs=21.8

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhc
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ..+.|+|++|+|||+|+.+++....
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~~~   63 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNLK   63 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            4688889999999999999998753

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=94.98  E-value=0.022  Score=46.26  Aligned_cols=38  Identities=24%  Similarity=0.245  Sum_probs=30.7

Q ss_pred             CCeeEEE-ecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           73 CREVTEI-GGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        73 ~G~i~~i-~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      .+.++.+ .+..|+||||++.++|...+       .+.+|+.||..
T Consensus        26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-------~g~~VlliD~D   64 (267)
T 3k9g_A           26 KPKIITIASIKGGVGKSTSAIILATLLS-------KNNKVLLIDMD   64 (267)
T ss_dssp             CCEEEEECCSSSSSCHHHHHHHHHHHHT-------TTSCEEEEEEC
T ss_pred             CCeEEEEEeCCCCchHHHHHHHHHHHHH-------CCCCEEEEECC
Confidence            3455555 66799999999999998875       57899999965

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=94.98  E-value=0.017  Score=50.58  Aligned_cols=28  Identities=25%  Similarity=0.325  Sum_probs=23.8

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +..|.++.|.||+|+|||+++..++.-.
T Consensus        23 ~~~~~~~~i~G~nG~GKstll~ai~~~~   50 (430)
T 1w1w_A           23 FGESNFTSIIGPNGSGKSNMMDAISFVL   50 (430)
T ss_dssp             CTTCSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence            4568999999999999999998777544

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=94.98  E-value=0.0058  Score=54.91  Aligned_cols=27  Identities=26%  Similarity=0.302  Sum_probs=23.0

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ..|.-+.|+||||+|||+++..++...
T Consensus        39 ~~~~~VLL~GpPGtGKT~LAraLa~~l   65 (500)
T 3nbx_X           39 LSGESVFLLGPPGIAKSLIARRLKFAF   65 (500)
T ss_dssp             HHTCEEEEECCSSSSHHHHHHHGGGGB
T ss_pred             hcCCeeEeecCchHHHHHHHHHHHHHH
Confidence            345578999999999999999888765

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=94.97  E-value=0.063  Score=40.98  Aligned_cols=22  Identities=32%  Similarity=0.356  Sum_probs=18.6

Q ss_pred             eEEEecCCCCChHHHHHHHHHH
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      -+.|.|++|+|||+|+..++..
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~   49 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDD   49 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999988644

>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A

Probab=94.94  E-value=0.2  Score=44.98  Aligned_cols=43  Identities=16%  Similarity=-0.021  Sum_probs=25.9

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccc-cCCCCCeEEEEe
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVE-FGGLGGKAIYIG  115 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~-~~~~~~~vlyi~  115 (226)
                      .|.-+++.+|+|+|||....-.+........ ....+.+++|+.
T Consensus       110 ~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~  153 (563)
T 3i5x_A          110 EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVA  153 (563)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEEC
T ss_pred             CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEc
Confidence            4678999999999999764433333221100 011234788887

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=94.94  E-value=0.015  Score=49.97  Aligned_cols=25  Identities=36%  Similarity=0.244  Sum_probs=22.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAV   96 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~   96 (226)
                      +.+| ++.|+||+|+|||++...++.
T Consensus        24 ~~~g-~~~i~G~nG~GKttll~ai~~   48 (359)
T 2o5v_A           24 FPEG-VTGIYGENGAGKTNLLEAAYL   48 (359)
T ss_dssp             CCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred             EcCC-eEEEECCCCCChhHHHHHHHH
Confidence            5677 999999999999999888765

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=94.93  E-value=0.018  Score=47.53  Aligned_cols=37  Identities=24%  Similarity=0.289  Sum_probs=30.3

Q ss_pred             eEEE-ecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464           76 VTEI-GGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL  118 (226)
Q Consensus        76 i~~i-~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~  118 (226)
                      ++.| .+..|+||||++.++|...+      ..+.+|+.||...
T Consensus         6 vI~v~s~KGGvGKTT~a~nLA~~La------~~G~~VlliD~D~   43 (286)
T 2xj4_A            6 VIVVGNEKGGAGKSTIAVHLVTALL------YGGAKVAVIDLDL   43 (286)
T ss_dssp             EEEECCSSSCTTHHHHHHHHHHHHH------HTTCCEEEEECCT
T ss_pred             EEEEEcCCCCCCHHHHHHHHHHHHH------HCCCcEEEEECCC
Confidence            4444 46789999999999999987      4688999999653

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=94.92  E-value=0.036  Score=43.67  Aligned_cols=35  Identities=17%  Similarity=0.116  Sum_probs=28.0

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      |..+.|-|..||||||.+..++....       .+.+|++..
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~-------~~~~v~~~~   36 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV-------KDYDVIMTR   36 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT-------TTSCEEEEE
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH-------CCCCEEEee
Confidence            56899999999999999988887763       456676654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=94.91  E-value=0.016  Score=43.30  Aligned_cols=22  Identities=23%  Similarity=0.295  Sum_probs=19.6

Q ss_pred             eEEEecCCCCChHHHHHHHHHH
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      .+.|.|++|+|||+|...++..
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5789999999999999999764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=94.89  E-value=0.11  Score=39.96  Aligned_cols=23  Identities=17%  Similarity=0.179  Sum_probs=19.9

Q ss_pred             eEEEecCCCCChHHHHHHHHHHh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+.|.|++|+|||+|+..++..-
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~~   53 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTGA   53 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhhCC
Confidence            47899999999999999987654

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=94.87  E-value=0.021  Score=45.50  Aligned_cols=28  Identities=29%  Similarity=0.260  Sum_probs=25.1

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      .+|.++.+.|++|+||||.+..++....
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~   30 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQ   30 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4688999999999999999999988764

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=94.84  E-value=0.014  Score=49.11  Aligned_cols=25  Identities=32%  Similarity=0.296  Sum_probs=21.7

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHh
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -.++.|+|++|+||||++..++...
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            3589999999999999999888653

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=94.82  E-value=0.032  Score=50.43  Aligned_cols=40  Identities=15%  Similarity=0.058  Sum_probs=29.3

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHH--hccccccCCCCCeEEEEec
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVN--VQIPVEFGGLGGKAIYIGK  116 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~--~~lp~~~~~~~~~vlyi~~  116 (226)
                      ...++.|+|.+|+|||+||.+++..  ....    ..-..++|++.
T Consensus       151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~----~~F~~~~wv~v  192 (549)
T 2a5y_B          151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIG----INYDSIVWLKD  192 (549)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHCSSTBT----TTBSEEEEEEC
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHhhhHHHh----ccCCcEEEEEE
Confidence            4589999999999999999999862  1111    22257888874

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=94.82  E-value=0.019  Score=45.00  Aligned_cols=25  Identities=16%  Similarity=0.288  Sum_probs=21.7

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHh
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.++.|+|++|+|||+++..++...
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            3578999999999999999888764

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=94.76  E-value=0.11  Score=55.26  Aligned_cols=92  Identities=18%  Similarity=0.131  Sum_probs=0.0

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhh-------------CCC
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSE-------------HKD  140 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~-------------~~~  140 (226)
                      |.-++++||||+|||+++.+++...        .+..++.+...  ...........++..+..             ..+
T Consensus      1267 ~~~vLL~GPpGtGKT~la~~~l~~~--------~~~~~~~infs--a~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk 1336 (2695)
T 4akg_A         1267 KRGIILCGPPGSGKTMIMNNALRNS--------SLYDVVGINFS--KDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIK 1336 (2695)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHSC--------SSCEEEEEECC--TTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSS
T ss_pred             CCeEEEECCCCCCHHHHHHHHHhcC--------CCCceEEEEee--cCCCHHHHHHHHHHHhhhccccCCccccCCCCCc


Q ss_pred             ceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCC
Q 036464          141 VKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSL  183 (226)
Q Consensus       141 ~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~  183 (226)
                      .-+++||++...-...+..-        .....|+++....++
T Consensus      1337 ~~VlFiDEinmp~~d~yg~q--------~~lelLRq~le~gg~ 1371 (2695)
T 4akg_A         1337 NLVLFCDEINLPKLDKYGSQ--------NVVLFLRQLMEKQGF 1371 (2695)
T ss_dssp             CEEEEEETTTCSCCCSSSCC--------HHHHHHHHHHHTSSE
T ss_pred             eEEEEecccccccccccCch--------hHHHHHHHHHhcCCE

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=94.75  E-value=0.015  Score=44.36  Aligned_cols=20  Identities=45%  Similarity=0.351  Sum_probs=18.3

Q ss_pred             EEEecCCCCChHHHHHHHHH
Q 036464           77 TEIGGVPGIGKTQLGIQLAV   96 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~   96 (226)
                      +.|.|++|+|||+|+..++.
T Consensus         5 v~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            5 LMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEESCTTSSHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            78999999999999998875

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=94.74  E-value=0.14  Score=40.76  Aligned_cols=26  Identities=23%  Similarity=0.249  Sum_probs=23.2

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ..++.|.|++|||||+++..++...-
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~lg   39 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEELG   39 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence            45899999999999999999998763

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=94.74  E-value=0.023  Score=51.58  Aligned_cols=38  Identities=24%  Similarity=0.261  Sum_probs=31.3

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      +.++.++|.+|+||||++..++....      ..+.++.+++.+
T Consensus       372 ~~~I~l~G~~GsGKSTia~~La~~L~------~~G~~~~~ld~D  409 (546)
T 2gks_A          372 GFCVWLTGLPCAGKSTIAEILATMLQ------ARGRKVTLLDGD  409 (546)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEECHH
T ss_pred             ceEEEccCCCCCCHHHHHHHHHHHhh------hcCCeEEEECch
Confidence            78999999999999999999988753      245678888854

>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*

Probab=94.73  E-value=0.024  Score=49.60  Aligned_cols=37  Identities=22%  Similarity=0.240  Sum_probs=29.2

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK  116 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~  116 (226)
                      ..-+.|.|++|+|||+++..++.++.      ..+.+++.+|.
T Consensus        53 ~~h~~i~G~tGsGKs~~~~~li~~~~------~~g~~viv~Dp   89 (437)
T 1e9r_A           53 PRHLLVNGATGTGKSVLLRELAYTGL------LRGDRMVIVDP   89 (437)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHHHH------HTTCEEEEEEE
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHHH------HCCCcEEEEeC
Confidence            34689999999999999877777765      35667888873

>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}

Probab=94.66  E-value=0.012  Score=50.40  Aligned_cols=36  Identities=22%  Similarity=0.339  Sum_probs=30.0

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      |....+..|+||||++.++|...+      ..+.+|+.||..
T Consensus         4 Iav~s~KGGvGKTT~a~nLA~~LA------~~G~rVLlID~D   39 (361)
T 3pg5_A            4 ISFFNNKGGVGKTTLSTNVAHYFA------LQGKRVLYVDCD   39 (361)
T ss_dssp             EEBCCSSCCHHHHHHHHHHHHHHH------HTTCCEEEEECC
T ss_pred             EEEEcCCCCCcHHHHHHHHHHHHH------hCCCcEEEEEcC
Confidence            344457899999999999999987      478999999954

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	226
d1szpa2	251	c.37.1.11 (A:145-395) DNA repair protein Rad51, ca	3e-19
d1pzna2	254	c.37.1.11 (A:96-349) DNA repair protein Rad51, cat	1e-18
d1v5wa_	258	c.37.1.11 (A:) Meiotic recombination protein DMC1/	2e-17
d1n0wa_	242	c.37.1.11 (A:) DNA repair protein Rad51, catalytic	7e-16
d2i1qa2	258	c.37.1.11 (A:65-322) DNA repair protein Rad51, cat	1e-14
d1tf7a1	242	c.37.1.11 (A:14-255) Circadian clock protein KaiC	2e-12
d1tf7a2	242	c.37.1.11 (A:256-497) Circadian clock protein KaiC	3e-11
d1mo6a1	269	c.37.1.11 (A:1-269) RecA protein, ATPase-domain {M	1e-08
d1u94a1	263	c.37.1.11 (A:6-268) RecA protein, ATPase-domain {E	5e-08
d1xp8a1	268	c.37.1.11 (A:15-282) RecA protein, ATPase-domain {	7e-08
d1cr2a_	277	c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase),	4e-07
d1nlfa_	274	c.37.1.11 (A:) Hexameric replicative helicase repA	3e-05

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.3 bits (199), Expect = 3e-19
 Identities = 37/116 (31%), Positives = 56/116 (48%), Gaps = 3/116 (2%)

Query: 41  TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
           TA D      E L  +TT   +LD +LGGG+    +TE+ G    GK+QL   LAV  QI
Sbjct: 2   TAADFHMRRSE-LICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQI 60

Query: 101 PVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHG 156
           P++ GG  GK +YI     F      +++   +F  +  D    +  + A++  H 
Sbjct: 61  PLDIGGGEGKCLYIDTEGTFR--PVRLVSIAQRFGLDPDDALNNVAYARAYNADHQ 114

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 79.7 bits (195), Expect = 1e-18
 Identities = 42/147 (28%), Positives = 62/147 (42%), Gaps = 1/147 (0%)

Query: 40  QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
             A + L++    + RI+T    LD +LGGGI  + +TE+ G  G GKTQL   LAV VQ
Sbjct: 3   MRADEYLKKRAT-IGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQ 61

Query: 100 IPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVD 159
           +P E GGL G  I+I     F  E+   I        +     + +  +   + +   V 
Sbjct: 62  LPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQ 121

Query: 160 LALRTRVLSGIALKLMNLAKKFSLALL 186
            A           + + L    SL   
Sbjct: 122 QAEDKIKELLNTDRPVKLLIVDSLTSH 148

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.7 bits (187), Expect = 2e-17
 Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 38  GTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
           G  TA++  ++ +  +  ITT   + D +LGGGI    +TE  G    GKTQL   L V 
Sbjct: 2   GFLTAFEYSEKRKM-VFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 60

Query: 98  VQIPVEFGGLGGKAIYIGKCLGFYTEQSAVI 128
            Q+P   G  GGK I+I     F  ++   I
Sbjct: 61  AQLPGAGGYPGGKIIFIDTENTFRPDRLRDI 91

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (174), Expect = 7e-16
 Identities = 31/103 (30%), Positives = 46/103 (44%)

Query: 53  LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAI 112
           + +ITT   +LD +L GGI    +TE+ G    GKTQ+   LAV  Q+P++ GG  GKA+
Sbjct: 2   IIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAM 61

Query: 113 YIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRH 155
           YI     F  E+   +              V    +     + 
Sbjct: 62  YIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNTDHQT 104

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 69.0 bits (167), Expect = 1e-14
 Identities = 27/90 (30%), Positives = 49/90 (54%), Gaps = 5/90 (5%)

Query: 40  QTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
           ++  D+L++    + +++TS ++LD++LGGG+  + VTE  GV G GKTQ+  Q  VN+Q
Sbjct: 1   KSGIDLLKQRST-VWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQ 59

Query: 100 I----PVEFGGLGGKAIYIGKCLGFYTEQS 125
                  +   +    +   K +   TE +
Sbjct: 60  NPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 89

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

 Score = 62.7 bits (151), Expect = 2e-12
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 49  EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQI 100
           E +++A++ T     D+I  GG+     T + G  G GKT   IQ   N  I
Sbjct: 1   EHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 52

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

 Score = 58.8 bits (141), Expect = 3e-11
 Identities = 14/51 (27%), Positives = 22/51 (43%)

Query: 49 EQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ 99
          ++ S  R+++    LD + GGG     +    G  G GKT L  +   N  
Sbjct: 1  QRSSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENAC 51

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 269

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 51.8 bits (124), Expect = 1e-08
 Identities = 38/164 (23%), Positives = 59/164 (35%), Gaps = 34/164 (20%)

Query: 45  MLQEEQESLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVE 103
           +  E ++ ++ I T    LD  LG GG+    V EI G    GKT + +    N Q    
Sbjct: 30  LGDEARQPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ---- 85

Query: 104 FGGLGGKAIYI----------GKCLGFYTEQSAV---------INYLDKFVSEHKDVKVV 144
               GG A +I           K LG  T+   V         +   D  +     + +V
Sbjct: 86  --AAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIRSGA-LDIV 142

Query: 145 IIDSIAFHF-------RHGFVDLALRTRVLSGIALKLMNLAKKF 181
           +IDS+A            G   + L+ R++S    K+       
Sbjct: 143 VIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNS 186

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} Length = 263

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

 Score = 49.5 bits (118), Expect = 5e-08
 Identities = 34/162 (20%), Positives = 55/162 (33%), Gaps = 34/162 (20%)

Query: 47  QEEQESLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG 105
           ++    +  I+T    LD  LG GG+    + EI G    GKT L +Q+    Q      
Sbjct: 26  EDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---- 81

Query: 106 GLGGKAIYIG----------KCLG------FYTEQSAV---INYLDKFVSEHKDVKVVII 146
             G    +I           + LG        ++       +   D        V V+++
Sbjct: 82  --GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA-VDVIVV 138

Query: 147 DSIAFHFRH-------GFVDLALRTRVLSGIALKLMNLAKKF 181
           DS+A            G   + L  R++S    KL    K+ 
Sbjct: 139 DSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS 180

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} Length = 268

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 49.1 bits (117), Expect = 7e-08
 Identities = 37/169 (21%), Positives = 61/169 (36%), Gaps = 34/169 (20%)

Query: 45  MLQEEQESLARITTSCADLDNILGGGIG-CREVTEIGGVPGIGKTQLGIQLAVNVQIPVE 103
           +  E +  +  ++T    LD  LG G      +TEI G    GKT L + +    Q    
Sbjct: 27  LGAESKLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKA-- 84

Query: 104 FGGLGGKAIYIG----------KCLGFYTEQSAV---------INYLDKFVSEHKDVKVV 144
               GG   +I           + LG  T++  V         +  ++  V     + VV
Sbjct: 85  ----GGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRS-GAIDVV 139

Query: 145 IIDSIAFHF-------RHGFVDLALRTRVLSGIALKLMNLAKKFSLALL 186
           ++DS+A            G     L+ R++S    KL  +  K   A +
Sbjct: 140 VVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAI 188

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

 Score = 47.3 bits (111), Expect = 4e-07
 Identities = 13/57 (22%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 44 DMLQEE---QESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN 97
          + ++E    +ES+  + + C  +++   G  G  EV  +    G+GK+    Q A+ 
Sbjct: 3  ERIREHLSSEESVGLLFSGCTGINDKTLGARG-GEVIMVTSGSGMGKSTFVRQQALQ 58

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} Length = 274

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

 Score = 41.6 bits (96), Expect = 3e-05
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV 98
          L     +   LD +L   +    V  +    G GK+ L +QLA  +
Sbjct: 9  LEAFAAAPPPLDYVLPNMVA-GTVGALVSPGGAGKSMLALQLAAQI 53

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	226
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	99.94
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	99.94
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	99.93
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	99.93
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	99.92
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	99.91
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	99.9
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	99.89
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	99.89
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	99.88
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	99.84
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	99.75
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.04
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.0
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	98.99
d2awna2	232	Maltose transport protein MalK, N-terminal domain	98.97
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	98.95
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	98.93
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	98.93
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	98.93
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	98.87
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.86
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	98.86
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	98.85
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.84
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	98.84
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	98.84
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.83
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.81
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	98.78
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	98.78
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	98.75
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.73
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	98.69
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	98.6
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.57
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	98.51
d1okkd2	207	GTPase domain of the signal recognition particle r	98.5
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.44
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	98.4
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.38
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.31
d1szpa1	64	DNA repair protein Rad51, N-terminal domain {Baker	98.3
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.21
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	98.2
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	98.18
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.14
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	98.02
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.96
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	97.96
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.91
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.91
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.9
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	97.87
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.85
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	97.85
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	97.8
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.79
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	97.75
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.75
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.73
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.73
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.7
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.7
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	97.68
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.68
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	97.67
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.66
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	97.65
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.65
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.63
d2i1qa1	60	DNA repair protein Rad51, N-terminal domain {Archa	97.62
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	97.62
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.59
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.59
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	97.55
d1xpua3	289	Transcription termination factor Rho, ATPase domai	97.55
d1b22a_	70	DNA repair protein Rad51, N-terminal domain {Human	97.53
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	97.53
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.53
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.52
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	97.52
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	97.52
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.5
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.5
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	97.5
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.48
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.46
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	97.45
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.43
d1doqa_	69	C-terminal domain of RNA polymerase alpha subunit	97.42
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	97.42
d1z3eb1	67	C-terminal domain of RNA polymerase alpha subunit	97.41
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.41
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	97.4
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.37
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.37
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.36
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	97.36
d1pzna1	61	DNA repair protein Rad51, N-terminal domain {Archa	97.36
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.36
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.35
d1lb2b_	72	C-terminal domain of RNA polymerase alpha subunit	97.27
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.25
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.24
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	97.22
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.21
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.19
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.15
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.15
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	97.15
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	97.14
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	97.1
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.09
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.09
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	97.08
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.05
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	97.03
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	97.02
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.97
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	96.96
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.95
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.95
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.94
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	96.92
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.87
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.86
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.85
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.84
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	96.84
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.82
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.8
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.78
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.72
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.71
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.69
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.69
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.68
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.66
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	96.64
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.63
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	96.63
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	96.6
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.57
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.55
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.54
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	96.51
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.44
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	96.42
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	96.4
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	96.39
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.39
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.38
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	96.35
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.34
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.24
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.23
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.22
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.2
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.13
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.13
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.11
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.11
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.1
d1veca_	206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	96.08
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.07
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.06
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	96.02
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.96
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	95.95
d1tuea_	205	Replication protein E1 helicase domain {Human papi	95.84
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.79
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.78
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	95.75
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.75
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.75
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	95.65
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.6
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.56
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	95.52
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.42
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.37
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	95.25
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.24
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.22
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	95.22
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.21
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.2
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.11
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.08
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.06
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.93
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	94.88
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	94.86
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	94.86
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.84
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	94.83
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	94.74
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	94.74
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	94.71
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	94.7
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	94.69
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	94.66
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	94.63
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	94.62
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	94.62
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	94.61
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.61
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	94.6
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	94.59
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	94.56
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	94.53
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	94.47
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.44
d2fh5b1	207	Signal recognition particle receptor beta-subunit	94.44
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.43
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	94.4
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	94.38
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	94.36
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	94.34
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	94.33
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	94.31
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	94.24
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	94.18
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.18
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	94.18
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.16
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	94.13
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	94.11
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	94.1
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	94.09
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	94.06
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.02
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	94.02
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	93.91
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	93.9
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.87
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	93.87
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	93.86
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	93.83
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	93.81
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	93.8
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	93.69
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	93.69
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	93.58
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	93.49
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	93.36
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	93.35
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	93.32
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	93.31
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	93.3
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	93.26
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	93.25
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	93.19
d2j0sa1	222	Probable ATP-dependent RNA helicase DDX48 {Human (	93.16
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	93.15
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	92.95
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	92.81
d1jx4a2	240	DinB homolog (DBH) {Archaeon Sulfolobus solfataric	92.67
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	92.66
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	92.37
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	92.23
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	92.18
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.17
d1u9la_	68	Transcription elongation protein NusA {Escherichia	92.11
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	91.7
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	91.55
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	91.43
d1zeta2	273	DNA polymerase iota {Human (Homo sapiens) [TaxId:	91.23
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	91.17
d1kfta_	56	Excinuclease UvrC C-terminal domain {Escherichia c	91.08
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.47
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	90.33
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.96
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.9
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	89.76
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	89.61
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	89.5
d1wrba1	238	putative ATP-dependent RNA helicase VlgB {Flatworm	88.72
d2bgwa1	70	DNA repair endonuclease XPF {Aeropyrum pernix [Tax	88.65
d1x2ia1	68	ATP-dependent RNA helicase PF2015 {Pyrococcus furi	88.03
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	87.99
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	87.98
d2a1ja1	62	DNA repair endonuclease XPF {Human (Homo sapiens)	86.06
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	83.95
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	83.51
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	82.84
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	82.65
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	82.25
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	81.66
d1w36b1	485	Exodeoxyribonuclease V beta chain (RecB), N-termin	81.14
d1jmsa3	60	Terminal deoxynucleotidyl transferase {Mouse (Mus	80.7
d1t5la1	413	Nucleotide excision repair enzyme UvrB {Bacillus c	80.49
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	80.48
d2bcqa2	57	DNA polymerase lambda {Human (Homo sapiens) [TaxId	80.48
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	80.44
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	80.32
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	80.28
d1rifa_	282	DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]	80.03

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.94  E-value=5.1e-27  Score=194.30  Aligned_cols=150  Identities=25%  Similarity=0.287  Sum_probs=110.5

Q ss_pred             cccCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC---------
Q 036464           51 ESLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF---------  120 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~---------  120 (226)
                      ++.++||||++.||.+|+ ||+|.|++++|+|++|+|||+||++++.+++      ..++.|+|||+|...         
T Consensus        33 ~~~~~i~TGs~~lD~~Lg~GGip~g~itei~G~~~sGKT~l~l~~~~~aq------k~g~~v~yiDtE~~~~~~~a~~~G  106 (268)
T d1xp8a1          33 LDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQ------KAGGTCAFIDAEHALDPVYARALG  106 (268)
T ss_dssp             CCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH------HTTCCEEEEESSCCCCHHHHHHTT
T ss_pred             CCCCeEcCCCHHHHHHhcCCCccCceEEEEecCCccchHHHHHHHHHHHH------hCCCEEEEEECCccCCHHHHHHhC
Confidence            567899999999999997 9999999999999999999999999999998      467899999998411         


Q ss_pred             ------------chHHHHHHHHHHHHHhhCCCceEEEEcCCchhh-hcCcCC------hHHHHHHHHHHHHHHHHHHHHc
Q 036464          121 ------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHF-RHGFVD------LALRTRVLSGIALKLMNLAKKF  181 (226)
Q Consensus       121 ------------~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~-~~~~~~------~~~r~~~l~~~~~~L~~la~~~  181 (226)
                                  ..|+  .++.++.++++ .++++|||||+++++ +.+++.      ...+++.+...++.|.+++.++
T Consensus       107 vd~d~i~~~~~~~~E~--~~~~~~~l~~~-~~~~liIiDSi~al~~r~e~~~~~~~~~~~~~a~~l~~~lr~l~~~~~~~  183 (268)
T d1xp8a1         107 VNTDELLVSQPDNGEQ--ALEIMELLVRS-GAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKT  183 (268)
T ss_dssp             CCGGGCEEECCSSHHH--HHHHHHHHHTT-TCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTT
T ss_pred             CCchhEEEEcCCCHHH--HHHHHHHHHhc-CCCcEEEEecccccccHHHHcccccchhHHHHHHHHHHHHHHHHhhhhhc
Confidence                        1121  24455666655 478999999999998 555542      1247788899999999999999


Q ss_pred             CCEEEEeccccccCCCCCCcCCcCCCCc
Q 036464          182 SLALLEPNLATTANLAESCLTCLRDSGS  209 (226)
Q Consensus       182 ~~~vi~~nq~~~~~~~~~~~~~~~~sg~  209 (226)
                      ++++|+|||++.+++.....+.....|.
T Consensus       184 ~~~vi~tNQv~~~~g~~~g~~~~~~GG~  211 (268)
T d1xp8a1         184 GTAAIFINQVREKIGVMYGNPETTTGGR  211 (268)
T ss_dssp             CCEEEEEEEC---------------CHH
T ss_pred             CCeEEEEeEEeeccccccCcceeecccc
Confidence            9999999999998875544443333343

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.2e-26  Score=191.77  Aligned_cols=158  Identities=23%  Similarity=0.219  Sum_probs=112.4

Q ss_pred             cccCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc----------
Q 036464           51 ESLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG----------  119 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~----------  119 (226)
                      .+.++||||+..||.+|+ ||+|+|.+++|+|+||+|||+||++++.+++      ..++.|+|||+|..          
T Consensus        30 ~~~~~isTG~~~lD~~Lg~GGi~~g~itei~G~~gsGKTtl~l~~~~~~q------~~g~~~vyidtE~~~~~~~a~~~G  103 (263)
T d1u94a1          30 MDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ------REGKTCAFIDAEHALDPIYARKLG  103 (263)
T ss_dssp             CCCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEESSCCCCHHHHHHTT
T ss_pred             CCCCeEccCCHHHHHHhcCCCccCceEEEEecCCCcHHHHHHHHHHHHHH------cCCCEEEEEccccccCHHHHHHhC
Confidence            457899999999999997 9999999999999999999999999999998      46889999999841          


Q ss_pred             -----------CchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhc-----CcC--ChHHHHHHHHHHHHHHHHHHHHc
Q 036464          120 -----------FYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRH-----GFV--DLALRTRVLSGIALKLMNLAKKF  181 (226)
Q Consensus       120 -----------~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~-----~~~--~~~~r~~~l~~~~~~L~~la~~~  181 (226)
                                 +..|+  .++.++.++++. ++++|||||++++++.     +..  ....+.+.+.+.++.|..++.++
T Consensus       104 vd~d~v~~~~~~~~E~--~~~~i~~l~~~~-~~~liViDSi~al~~~~e~~~~~~~~~~~~~a~~l~~~~~~l~~~~~~~  180 (263)
T d1u94a1         104 VDIDNLLCSQPDTGEQ--ALEICDALARSG-AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS  180 (263)
T ss_dssp             CCGGGCEEECCSSHHH--HHHHHHHHHHHT-CCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHEEEecCCCHHH--HHHHHHHHHhcC-CCCEEEEECccccccchhcccccccchHHHHHHHHHHHHHHHHHhhhcc
Confidence                       11222  345556666654 7899999999998742     111  13345677889999999999999


Q ss_pred             CCEEEEeccccccCCCCCCcCCcCCCCchhHHHHHhh
Q 036464          182 SLALLEPNLATTANLAESCLTCLRDSGSRKAVAAAAA  218 (226)
Q Consensus       182 ~~~vi~~nq~~~~~~~~~~~~~~~~sg~~~~~~~~~~  218 (226)
                      +++||+|||++.+++.....+. ...|.......++.
T Consensus       181 ~~~vi~~NQv~~~~~~~~g~~~-~~~GG~al~~~~~~  216 (263)
T d1u94a1         181 NTLLIFINQIRMKIGVMFGNPE-TTTGGNALKFYASV  216 (263)
T ss_dssp             TCEEEEEEC---------------CTTCSHHHHHCSE
T ss_pred             CceEEEEEEEEeccccccCCCc-cccccchhheeeEE
Confidence            9999999999988776544333 34455444444443

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.93  E-value=5.2e-26  Score=188.09  Aligned_cols=144  Identities=24%  Similarity=0.287  Sum_probs=109.6

Q ss_pred             cccCceecCchhHHHhhC-CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC---------
Q 036464           51 ESLARITTSCADLDNILG-GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF---------  120 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~-GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~---------  120 (226)
                      .+.+.||||++.||.+|+ ||+|.|.+++|+|+||+|||+||++++.+++      ..+..|+|||+|...         
T Consensus        36 ~~~~~i~TG~~~lD~~lg~gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q------~~g~~~vyIDtE~~~~~e~a~~~G  109 (269)
T d1mo6a1          36 QPISVIPTGSIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ------AAGGVAAFIDAEHALDPDYAKKLG  109 (269)
T ss_dssp             CCSCCBCCSCHHHHHHTSSSSBCSSSEEEEECSSSSSHHHHHHHHHHHHH------HTTCEEEEEESSCCCCHHHHHHHT
T ss_pred             CccceEccCCHHHHHhhccCCcccceeEEEecCCCcHHHHHHHHHHHHHh------cCCCEEEEEECCccCCHHHHHHhC
Confidence            457899999999999998 9999999999999999999999999999988      578899999998511         


Q ss_pred             ------------chHHHHHHHHHHHHHhhCCCceEEEEcCCchhh-hcCcCC------hHHHHHHHHHHHHHHHHHHHHc
Q 036464          121 ------------YTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHF-RHGFVD------LALRTRVLSGIALKLMNLAKKF  181 (226)
Q Consensus       121 ------------~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~-~~~~~~------~~~r~~~l~~~~~~L~~la~~~  181 (226)
                                  ..|+  .++.++.++++ .++++|||||+++++ +.+++.      ...+++.+.+.++.|..++.++
T Consensus       110 vD~d~il~~~~~~~E~--~~~~~~~l~~~-~~~~liIiDSi~al~~~~E~e~~~~~~~~~~~a~~l~~~l~~l~~~~~~~  186 (269)
T d1mo6a1         110 VDTDSLLVSQPDTGEQ--ALEIADMLIRS-GALDIVVIDSVAALVPRAELEGEMGDSHVGLQARLMSQALRKMTGALNNS  186 (269)
T ss_dssp             CCGGGCEEECCSSHHH--HHHHHHHHHHT-TCEEEEEEECSTTCCCHHHHC-------CCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHeEEecCCCHHH--HHHHHHHHHhc-CCCCEEEEecccccccHHHhccccccchHHHHHHHHHHHHHHHHHHHhhc
Confidence                        1222  34455556655 479999999999998 454431      2346788999999999999999


Q ss_pred             CCEEEEeccccccCCCCCCcCC
Q 036464          182 SLALLEPNLATTANLAESCLTC  203 (226)
Q Consensus       182 ~~~vi~~nq~~~~~~~~~~~~~  203 (226)
                      ++++|+|||++.+++.....+.
T Consensus       187 ~~~vi~~NQv~~~~~~~~g~~~  208 (269)
T d1mo6a1         187 GTTAIFINQLRDKIGVMFGSPE  208 (269)
T ss_dssp             TCEEEEEECC------------
T ss_pred             CchhhhhheeeccCccccCCce
Confidence            9999999999998875544443

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=9.4e-25  Score=177.40  Aligned_cols=158  Identities=32%  Similarity=0.414  Sum_probs=121.8

Q ss_pred             hHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464           39 TQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL  118 (226)
Q Consensus        39 ~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~  118 (226)
                      +.||.|+.+++ ....+||||++.||.+|+||+|+|++++|+|+||+|||+||+|++.+++.....+.....++|++.+.
T Consensus         3 ~~~~~~~~~~~-~~~~ri~TGi~~LD~~lgGGip~G~~~~i~G~~GsGKT~lalq~~~~~~~~~~~~~~~~~~~~~~~~~   81 (258)
T d1v5wa_           3 FLTAFEYSEKR-KMVFHITTGSQEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN   81 (258)
T ss_dssp             SEEHHHHHHHG-GGCCCBCCSCHHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred             cccHHHHHHhh-cCCceecCCCHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHHHHhhhhcccccceEEEechHH
Confidence            56899999987 67789999999999999999999999999999999999999999999886554455677899999763


Q ss_pred             c------------------------------CchHHHHHHHHHHHHHh-hCCCceEEEEcCCchhhhcCcC---ChHHHH
Q 036464          119 G------------------------------FYTEQSAVINYLDKFVS-EHKDVKVVIIDSIAFHFRHGFV---DLALRT  164 (226)
Q Consensus       119 ~------------------------------~~~~~~~~l~~l~~~l~-~~~~~~lvVIDsl~~l~~~~~~---~~~~r~  164 (226)
                      .                              ...+.....+.+...+. +...++++++|++.+++.....   +...+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vid~~~~~~~~~~~~~~~~~~~~  161 (258)
T d1v5wa_          82 TFRPDRLRDIADRFNVDHDAVLDNVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQ  161 (258)
T ss_dssp             CCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHH
T ss_pred             HHHHHHHHHHHhhhcccchhhhhcccccccCcHHHHHHHHHHHHHHhhhhccCceEEEeeehhhhhhccccCCcchhHHH
Confidence            1                              11122223334433333 3446899999999988765433   456678


Q ss_pred             HHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464          165 RVLSGIALKLMNLAKKFSLALLEPNLATTANLA  197 (226)
Q Consensus       165 ~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~  197 (226)
                      ..+.+++..|++++.+++++++++||.+.....
T Consensus       162 ~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~  194 (258)
T d1v5wa_         162 QKLAQMLSRLQKISEEYNVAVFVTNQMTADPGA  194 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHTCEEEEEECC------
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEeeeEeecccc
Confidence            889999999999999999999999999876554

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.92  E-value=4.9e-24  Score=173.26  Aligned_cols=159  Identities=34%  Similarity=0.486  Sum_probs=119.7

Q ss_pred             hHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464           39 TQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL  118 (226)
Q Consensus        39 ~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~  118 (226)
                      |.+|.|+++.+ ...++||||++.||.+|+||+|+|++++|+|+||+|||+|++|++.+.+.+....+.+..++|++++.
T Consensus         2 ~~~~~~~~~~~-~~i~ri~TGi~~LD~ll~GGlp~G~~~li~G~pGsGKT~~~lq~~~~~~~~~~~~~~~~~~~~~~~~~   80 (254)
T d1pzna2           2 FMRADEYLKKR-ATIGRISTGSKSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN   80 (254)
T ss_dssp             CEEHHHHHHHH-HTCCEECCSCHHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred             cccHHHHHHhh-cCCCeECCCCHHHHHhhcCCccCCEEEEEEcCCCCCHHHHHHHHHHHhhchHHhcCCCceEEEEeccc
Confidence            45778888877 78899999999999999999999999999999999999999999999987666666789999999763


Q ss_pred             cCc------------------------------hHHHHHHHHHHHH----HhhCCCceEEEEcCCchhhhcCcC---ChH
Q 036464          119 GFY------------------------------TEQSAVINYLDKF----VSEHKDVKVVIIDSIAFHFRHGFV---DLA  161 (226)
Q Consensus       119 ~~~------------------------------~~~~~~l~~l~~~----l~~~~~~~lvVIDsl~~l~~~~~~---~~~  161 (226)
                      ...                              ......+......    +.....++++++|+++.+++.+..   ...
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viDs~~~~~~~~~~~~~~~~  160 (254)
T d1pzna2          81 TFRPERIREIAQNRGLDPDEVLKHIYVARAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALA  160 (254)
T ss_dssp             CCCHHHHHHHHHTTTCCHHHHGGGEEEEECCSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHH
T ss_pred             hhHHHHHHHHHHhcCCChHHhhhhhhhhhhccchhHHHHHHhhhhhhHHHHhhccCceeEeecchhheeehhhcccchhh
Confidence            111                              1111111111111    112347899999999988766443   344


Q ss_pred             HHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCC
Q 036464          162 LRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAE  198 (226)
Q Consensus       162 ~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~  198 (226)
                      .....+.+.+..++.++...++++++++|.++...+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  197 (254)
T d1pzna2         161 ERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAF  197 (254)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEEEEEECC------
T ss_pred             hhHHHHHHHHHHHHHHhhccceEEEecceEeeccCcc
Confidence            5667778888999999999999999999998876544

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=2e-24  Score=174.38  Aligned_cols=175  Identities=27%  Similarity=0.384  Sum_probs=126.2

Q ss_pred             hHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-
Q 036464           41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-  119 (226)
Q Consensus        41 ~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-  119 (226)
                      ||.|+.+++ ....+||||++.||.+|+||+|+|++++|+|+||+|||+||+|++.+++.+...+..+.+++|++++.. 
T Consensus         2 ~~~~~~~~~-~~~~~i~TGi~~LD~ll~GGi~~G~~~li~G~pGsGKT~l~lq~~~~~~~~~~~~~~~~~~~~i~~~~~~   80 (251)
T d1szpa2           2 TAADFHMRR-SELICLTTGSKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTF   80 (251)
T ss_dssp             CHHHHHHHH-HSSCEECCSCHHHHHHHTSSEESSSEEEEEESTTSSHHHHHHHHTTTTTSCTTTTCCSCEEEEEESSSCC
T ss_pred             CHHHHHHHh-cCCCeecCCCHHHHhhhCCCCcCCeEEEEEcCCCCCHHHHHHHHHHHhhhhhhhccCCceEEEEeecchH
Confidence            678887776 788999999999999999999999999999999999999999999999877666677899999997631 


Q ss_pred             -----------------------------CchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHHHHH
Q 036464          120 -----------------------------FYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVL  167 (226)
Q Consensus       120 -----------------------------~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l  167 (226)
                                                   ....+......+.+.+... .+.++++|++..+......   ....+....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~  159 (251)
T d1szpa2          81 RPVRLVSIAQRFGLDPDDALNNVAYARAYNADHQLRLLDAAAQMMSES-RFSLIVVDSVMALYRTDFSGRGELSARQMHL  159 (251)
T ss_dssp             CGGGGHHHHHHTCCCHHHHGGGEEEEECCSTTTHHHHHHHTHHHHHHS-CEEEEEEETGGGGGSCC-----CTHHHHHHH
T ss_pred             HHHHHHHHHHhcCCchhhhhcceEEEeccchhHHHHHHHHHHHHhhcc-ccceeeehhhhhhhhhhhccccchhhHHHHH
Confidence                                         1111222344455555554 7899999999987755432   344566677


Q ss_pred             HHHHHHHHHHHHHcCCEEEEeccccccCCCCCC--cCCcCCCCchhHHHHHh
Q 036464          168 SGIALKLMNLAKKFSLALLEPNLATTANLAESC--LTCLRDSGSRKAVAAAA  217 (226)
Q Consensus       168 ~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~~--~~~~~~sg~~~~~~~~~  217 (226)
                      ..++..|.+++..+++++++++|.+...++...  ......+|...+...++
T Consensus       160 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~  211 (251)
T d1szpa2         160 AKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPTGGNIMAHSST  211 (251)
T ss_dssp             HHHHHHHHHHHHHHCCCEEEEEECC----------------CHHHHHHHHCS
T ss_pred             HHHHHHHHhhhhhcceEEEEEEEEEeccCccccccCcceeccCccchhhhee
Confidence            788999999999999999999999987765422  22344455554544444

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=99.90  E-value=1.9e-23  Score=169.24  Aligned_cols=132  Identities=18%  Similarity=0.184  Sum_probs=106.4

Q ss_pred             cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc------------
Q 036464           51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL------------  118 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~------------  118 (226)
                      .+..+++||++.||++|+||+++|++++|+|+||+|||+||+|++.+.+      ..+.+|+|++.|.            
T Consensus         3 ~~~~ri~TG~~~LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~------~~~~~~~~is~e~~~~~~~~~~~~~   76 (242)
T d1tf7a2           3 SSNVRVSSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENAC------ANKERAILFAYEESRAQLLRNAYSW   76 (242)
T ss_dssp             CCCCEECCSCHHHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHH------TTTCCEEEEESSSCHHHHHHHHHTT
T ss_pred             CCCCccCCCcHHHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHHH------HhccccceeeccCCHHHHHHHHHHc
Confidence            4567899999999999999999999999999999999999999999987      5788999999873            


Q ss_pred             -cCc------------------hHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHH
Q 036464          119 -GFY------------------TEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAK  179 (226)
Q Consensus       119 -~~~------------------~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~  179 (226)
                       .+.                  ......++.+...+++. +++++||||++.++...      ....+..++..|.++++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~-~~~~vviDs~~~~~~~~------~~~~~~~~~~~l~~~~~  149 (242)
T d1tf7a2          77 GMDFEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDF-KPARIAIDSLSALARGV------SNNAFRQFVIGVTGYAK  149 (242)
T ss_dssp             SCCHHHHHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTT-CCSEEEEECHHHHTSSS------CHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHhhcCceEEEEeecchhhHHHHHHHHHHHHHhc-CCceeeeecchhhhcCC------CHHHHHHHHHHHHHHHH
Confidence             000                  01112355666666665 89999999999876542      23445678889999999


Q ss_pred             HcCCEEEEeccccccC
Q 036464          180 KFSLALLEPNLATTAN  195 (226)
Q Consensus       180 ~~~~~vi~~nq~~~~~  195 (226)
                      ++++++++++|.....
T Consensus       150 ~~~~~~i~~~~~~~~~  165 (242)
T d1tf7a2         150 QEEITGLFTNTSDQFM  165 (242)
T ss_dssp             HTTCEEEEEEECSSSS
T ss_pred             HcCCeEEEEEeeEeec
Confidence            9999999999987543

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=99.89  E-value=1.4e-22  Score=163.33  Aligned_cols=175  Identities=30%  Similarity=0.401  Sum_probs=124.2

Q ss_pred             hHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhcccccc----------CCCCCe
Q 036464           41 TAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEF----------GGLGGK  110 (226)
Q Consensus        41 ~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~----------~~~~~~  110 (226)
                      +..|+++++ +...+|+||++.||++|+||+++|++++|+|+||+|||+||+++|.+++.+...          ...+.+
T Consensus         2 ~~~~~~~~~-~~~~~i~TG~~~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~   80 (258)
T d2i1qa2           2 SGIDLLKQR-STVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPK   80 (258)
T ss_dssp             CTHHHHHHH-TTCCEECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEE
T ss_pred             CHHHHHHhh-CCCceecCCCHHHHHhcCCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCCceEEeecccchhcCce
Confidence            457888885 788999999999999999999999999999999999999999999999864321          123568


Q ss_pred             EEEEeccccCc------------------------------hHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC--
Q 036464          111 AIYIGKCLGFY------------------------------TEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV--  158 (226)
Q Consensus       111 vlyi~~e~~~~------------------------------~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~--  158 (226)
                      ++||++|....                              .+....+......+.....+.++++|++...+.....  
T Consensus        81 ~~~i~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vid~i~~~~~~~~~~~  160 (258)
T d2i1qa2          81 AVYIDTEGTFRPERIMQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGR  160 (258)
T ss_dssp             EEEEESSSCCCHHHHHHHHHHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCT
T ss_pred             EEEEEecCCcCHHHHHHHHhhcchhhhhhhhcceeeccCchhhHHHHHHHHHHHHHHhcccceeeeeEEEEeechhcccc
Confidence            99999863111                              1111223333333344457899999999977754433  


Q ss_pred             -ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCCCCcCCcCCCCchhHHHHHh
Q 036464          159 -DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAESCLTCLRDSGSRKAVAAAA  217 (226)
Q Consensus       159 -~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~~~~~~~~sg~~~~~~~~~  217 (226)
                       ....+.....+++..++.++..+++++++++|.++........+ ...+|+..+...+|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  219 (258)
T d2i1qa2         161 GKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMA-EQAIGGHIVGHAAT  219 (258)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------C-CEESSHHHHHHHCS
T ss_pred             ccchhhHHHHHHHHHHHHHhhhhcceEEEeecceEeccccccCCc-ccccCcchhhhhce
Confidence             34566777888999999999999999999999988766554433 23345544544444

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=99.89  E-value=3.8e-23  Score=165.86  Aligned_cols=135  Identities=20%  Similarity=0.220  Sum_probs=107.3

Q ss_pred             cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc------------
Q 036464           51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL------------  118 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~------------  118 (226)
                      +...+|+||++.||++|+||+++|++++|+|+||+|||+||+|++.+.+.     ..+.+++|++.|.            
T Consensus         3 ~~~~~i~TGi~~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~-----~~~~~~~~~s~e~~~~~~~~~~~~~   77 (242)
T d1tf7a1           3 QAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGII-----EFDEPGVFVTFEETPQDIIKNARSF   77 (242)
T ss_dssp             SSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-----HHCCCEEEEESSSCHHHHHHHHGGG
T ss_pred             CCCCcccCCcHHHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHHHHHH-----hcCCCcccccccCCHHHHHHHHHHc
Confidence            45789999999999999999999999999999999999999999988764     3456899999763            


Q ss_pred             ---------------------------cCchHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHH
Q 036464          119 ---------------------------GFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIA  171 (226)
Q Consensus       119 ---------------------------~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~  171 (226)
                                                 ....+...+++.+...+++. +++++|||+++.++.... +    ...+.+.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~-~~~~viiD~~~~l~~~~~-~----~~~~~~~~  151 (242)
T d1tf7a1          78 GWDLAKLVDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKY-RARRVSIDSVTSVFQQYD-A----SSVVRREL  151 (242)
T ss_dssp             TCCHHHHHHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHH-TCSEEEEECSTTTSTTTC-C----HHHHHHHH
T ss_pred             CCChHHHHHhcchhhhhhccchhhhhhhccccHHHHHHHHHHHHHhh-ccchhhhhHHHHHHHhcc-C----hhHHHHHH
Confidence                                       01122234567777788775 789999999998764321 2    23445667


Q ss_pred             HHHHHHHHHcCCEEEEeccccccCC
Q 036464          172 LKLMNLAKKFSLALLEPNLATTANL  196 (226)
Q Consensus       172 ~~L~~la~~~~~~vi~~nq~~~~~~  196 (226)
                      ..+.+++++.++++++++|.....+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~  176 (242)
T d1tf7a1         152 FRLVARLKQIGATTVMTTERIEEYG  176 (242)
T ss_dssp             HHHHHHHHHHTCEEEEEEECSSSSS
T ss_pred             HHHHHHHHhcCCceEEeeccccccc
Confidence            8888899999999999999887654

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=99.88  E-value=7.5e-23  Score=169.27  Aligned_cols=161  Identities=16%  Similarity=0.148  Sum_probs=105.8

Q ss_pred             cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-----------
Q 036464           51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-----------  119 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-----------  119 (226)
                      +....|+||++.||+++ ||+.+|++++|+|+||+|||+|+++++.+++.     ..+.+|+|++.|+.           
T Consensus        13 ~~~~~i~TG~~~lD~~~-~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~-----~~g~~v~~~s~E~~~~~~~~r~~~~   86 (277)
T d1cr2a_          13 ESVGLLFSGCTGINDKT-LGARGGEVIMVTSGSGMGKSTFVRQQALQWGT-----AMGKKVGLAMLEESVEETAEDLIGL   86 (277)
T ss_dssp             CCSCBCCCSCTTHHHHH-CSBCTTCEEEEECSTTSSHHHHHHHHHHHHHH-----TSCCCEEEEESSSCHHHHHHHHHHH
T ss_pred             CCccccCCCchhHHHHh-cCCCCCeEEEEEeCCCCCHHHHHHHHHHhhhh-----hcccceeEeeeccchhhHHhHHHHH
Confidence            44688999999999999 79999999999999999999999999998753     46889999998740           


Q ss_pred             -------CchH---------HH-------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC
Q 036464          120 -------FYTE---------QS-------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV  158 (226)
Q Consensus       120 -------~~~~---------~~-------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~  158 (226)
                             ....         .+                         .....+..... ..++++||||+++.+..... 
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vvID~l~~l~~~~~-  164 (277)
T d1cr2a_          87 HNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLAYMRS-GLGCDVIILDHISIVVSASG-  164 (277)
T ss_dssp             HTTCCGGGCHHHHHHHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHHHHHHHHHHHHH-TTCCSEEEEEEEEC-------
T ss_pred             hhcCCchhhcccccchhhhHHHHHHHHHhhccceeeeeccccchhHHHHHHHhhhhhh-ccCcceEEEccccccccccc-
Confidence                   0000         00                         01222333333 34899999999986543321 


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCCCC-----cCCcCCCCchhHHHHHhhhh
Q 036464          159 DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAESC-----LTCLRDSGSRKAVAAAAAQL  220 (226)
Q Consensus       159 ~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~~-----~~~~~~sg~~~~~~~~~~~l  220 (226)
                       .......+.+++..|+++|+++||+||+++|+++...+...     .......||....+.||.-+
T Consensus       165 -~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~~r~~~~~~~~~~~~~~~~~~~gS~~i~~~ad~vl  230 (277)
T d1cr2a_         165 -ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTII  230 (277)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHCCEEEEEEECC---------------------CHHHHHHCSEEE
T ss_pred             -ccchhHHHHHHHHHHHHHhhhccccceeecccccccccccccccccchhhhcccccchhhhCcEEE
Confidence             12234568889999999999999999999999976543211     11233467776777777543

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=4.9e-20  Score=144.89  Aligned_cols=144  Identities=31%  Similarity=0.442  Sum_probs=101.8

Q ss_pred             cCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc-----------
Q 036464           53 LARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY-----------  121 (226)
Q Consensus        53 ~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~-----------  121 (226)
                      ..+||||++.||.+|+||+++|++++|+|+||+|||+||+|++.+++.+.........+.+++.+....           
T Consensus         2 ~~ri~TG~~~LD~ll~GGi~~G~v~~i~G~~GsGKT~l~l~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (242)
T d1n0wa_           2 IIQITTGSKELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERY   81 (242)
T ss_dssp             CCEECCSCHHHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHT
T ss_pred             CCEEcCCCHHHHHhhcCCCcCCEEEEEEeCCCCCHHHHHHHHHHHHHHhhccccccceehhhhhhhhhHHHHHHHHHhhc
Confidence            578999999999999999999999999999999999999999999987665555666777877543111           


Q ss_pred             -------------------hHHHHHHHHHHHHHhhCCCceEEEEcCCchhhhcCcC---ChHHHHHHHHHHHHHHHHHHH
Q 036464          122 -------------------TEQSAVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFV---DLALRTRVLSGIALKLMNLAK  179 (226)
Q Consensus       122 -------------------~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~---~~~~r~~~l~~~~~~L~~la~  179 (226)
                                         .............+... ...++.+|++..+......   ....+......+...|.+++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  160 (242)
T d1n0wa_          82 GLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVES-RYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLAD  160 (242)
T ss_dssp             TCCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHHS-CEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhhhhhhchhhhhhhhhhhhhhhhhh-hheeecccceeeeehhhhhcccchhhhHHHHHHHHHHHHHhhh
Confidence                               11111223333333333 6789999999876654332   344566777888999999999


Q ss_pred             HcCCEEEEeccccccCCC
Q 036464          180 KFSLALLEPNLATTANLA  197 (226)
Q Consensus       180 ~~~~~vi~~nq~~~~~~~  197 (226)
                      +.++++++++|++...+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~  178 (242)
T d1n0wa_         161 EFGVAVVITNQVVAQVDG  178 (242)
T ss_dssp             HHCCEEEEEC--------
T ss_pred             hcceeEEEEEEEeccccc
Confidence            999999999999876543

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=3.4e-19  Score=146.57  Aligned_cols=157  Identities=14%  Similarity=0.113  Sum_probs=98.3

Q ss_pred             eecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccC----CCCCeEEEEeccccCchHHH------
Q 036464           56 ITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFG----GLGGKAIYIGKCLGFYTEQS------  125 (226)
Q Consensus        56 i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~----~~~~~vlyi~~e~~~~~~~~------  125 (226)
                      +..+-+.+|.+++| +.+|.+++|+|+||+|||+|++++|.+++...++.    ..+.+|+|++.|.  ..+++      
T Consensus        12 ~~~~~p~~d~li~G-~~pg~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~--~~~~~~~Rl~~   88 (274)
T d1nlfa_          12 FAAAPPPLDYVLPN-MVAGTVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED--PPTAIHHRLHA   88 (274)
T ss_dssp             HHSCCCCCCEEETT-EETTSEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS--CHHHHHHHHHH
T ss_pred             hcCCCCCHHHHhCC-ccCCcEEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEeccc--hHHHHHHHHHH
Confidence            44556788999964 55699999999999999999999999887543321    2356899999884  11110      


Q ss_pred             -----------------------------HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHH
Q 036464          126 -----------------------------AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMN  176 (226)
Q Consensus       126 -----------------------------~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~  176 (226)
                                                   .....+........++++||||+++.+......    ....+..++..|++
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvviD~l~~~~~~~~~----~~~~~~~~~~~l~~  164 (274)
T d1nlfa_          89 LGAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEEN----ASGPMAQVIGRMEA  164 (274)
T ss_dssp             HHTTSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHHHHHHTTCSEEEEECGGGGCCSCTT----CHHHHHHHHHHHHH
T ss_pred             HhhccChhhhhcccccceeccccCccchhHHHHHHHHHHHhccCccEEecCchhhhcccccc----chhhHHHHHHHHHH
Confidence                                         001222333333347899999999987654322    34457788999999


Q ss_pred             HHHHcCCEEEEeccccccCCCC-CCcCCcCCCCchhHHHHHhhh
Q 036464          177 LAKKFSLALLEPNLATTANLAE-SCLTCLRDSGSRKAVAAAAAQ  219 (226)
Q Consensus       177 la~~~~~~vi~~nq~~~~~~~~-~~~~~~~~sg~~~~~~~~~~~  219 (226)
                      ++++++++||+++|+++..... ...+....+||....+.+|+.
T Consensus       165 la~~~~~~vi~v~H~~K~~~~~~~~~~~~~~~Gssai~~~a~~v  208 (274)
T d1nlfa_         165 IAADTGCSIVFLHHASKGAAMMGAGDQQQASRGSSVLVDNIRWQ  208 (274)
T ss_dssp             HHHHHCCEEEEEEEC--------------------CTGGGCSCE
T ss_pred             HhhcCCCceehhhhccccccccCCcccccccccHHHHHhhccEE
Confidence            9999999999999999854322 222223346666666666543

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.04  E-value=7.6e-10  Score=88.15  Aligned_cols=46  Identities=9%  Similarity=0.040  Sum_probs=36.3

Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      .+|++++.|++++-++.     ..+    ..++..|+++.+++|+|||++.|-..
T Consensus       162 ~~P~lLllDEPTs~LD~-----~~~----~~i~~~l~~l~~~~g~tii~vTHd~~  207 (230)
T d1l2ta_         162 NNPPIILADQPTGALDS-----KTG----EKIMQLLKKLNEEDGKTVVVVTHDIN  207 (230)
T ss_dssp             TCCSEEEEESTTTTSCH-----HHH----HHHHHHHHHHHHTTCCEEEEECSCHH
T ss_pred             cCCCEEEecCCccccCH-----HHH----HHHHHHHHHHHHhhCCEEEEECCCHH
Confidence            37999999999976633     222    36788899999999999999998643

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.00  E-value=1.4e-09  Score=87.17  Aligned_cols=45  Identities=11%  Similarity=0.166  Sum_probs=36.0

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +|+++++|++++.++.     ..    ..++.+.|+++.+++|+|||++.|-..
T Consensus       157 ~P~iLllDEPt~~LD~-----~~----~~~i~~~l~~l~~~~g~tvi~vTHd~~  201 (240)
T d1g2912         157 KPQVFLMDEPLSNLDA-----KL----RVRMRAELKKLQRQLGVTTIYVTHDQV  201 (240)
T ss_dssp             CCSEEEEECTTTTSCH-----HH----HHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred             CCCEEEecCCCcccCH-----HH----HHHHHHHHHHHHhccCCEEEEEcCCHH
Confidence            7999999999986643     22    236778888999999999999998754

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.00  E-value=9.2e-10  Score=88.06  Aligned_cols=45  Identities=13%  Similarity=0.242  Sum_probs=35.8

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +|+++++|++++.+++     ..+    .++.+.|+++.++.|+|||++.|-..
T Consensus       154 ~P~iLllDEPts~LD~-----~~~----~~i~~ll~~l~~~~g~tii~vTHd~~  198 (239)
T d1v43a3         154 EPDVLLMDEPLSNLDA-----KLR----VAMRAEIKKLQQKLKVTTIYVTHDQV  198 (239)
T ss_dssp             CCSEEEEESTTTTSCH-----HHH----HHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred             CCCceeecCCcccCCH-----HHH----HHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence            7999999999986643     222    36778888999999999999998654

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=1.6e-09  Score=86.68  Aligned_cols=45  Identities=18%  Similarity=0.226  Sum_probs=35.9

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +|++++.|++++-+++     ..+    .++++.|+++.+++|+|||++.|-..
T Consensus       158 ~P~lLllDEPt~~LD~-----~~~----~~i~~~l~~l~~~~g~tvi~vTHdl~  202 (240)
T d3dhwc1         158 NPKVLLCDEATSALDP-----ATT----RSILELLKDINRRLGLTILLITHEMD  202 (240)
T ss_dssp             CCSEEEEESGGGSSCH-----HHH----HHHHHHHHHHHHHHCCEEEEEBSCHH
T ss_pred             CCCeEEeccccccCCH-----HHh----hHHHHHHHHHHhccCCEEEEEcCCHH
Confidence            7999999999976633     222    36778889999999999999998753

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.97  E-value=1.4e-09  Score=86.56  Aligned_cols=45  Identities=13%  Similarity=0.221  Sum_probs=35.9

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +|+++++|++++-+++     ..    ..++...|+++.++.|+|||++.|-..
T Consensus       148 ~P~illlDEPts~LD~-----~~----~~~i~~~l~~l~~~~g~tii~vTHd~~  192 (232)
T d2awna2         148 EPSVFLLDEPLSNLDA-----AL----RVQMRIEISRLHKRLGRTMIYVTHDQV  192 (232)
T ss_dssp             CCSEEEEESTTTTSCH-----HH----HHHHHHHHHHHHHHSCCEEEEEESCHH
T ss_pred             CCCEEEEcCCCCCCCH-----HH----HHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence            7999999999976643     22    236778899999999999999998653

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=98.95  E-value=1.8e-09  Score=85.81  Aligned_cols=46  Identities=20%  Similarity=0.146  Sum_probs=35.7

Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      .+|+++++|++++-+++     ..    ..++.+.|+++.++.|+|||++.|-..
T Consensus       144 ~~P~iLllDEPts~LD~-----~~----~~~i~~~l~~l~~~~g~tii~vtHd~~  189 (229)
T d3d31a2         144 TNPKILLLDEPLSALDP-----RT----QENAREMLSVLHKKNKLTVLHITHDQT  189 (229)
T ss_dssp             SCCSEEEEESSSTTSCH-----HH----HHHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             ccCCceeecCCCcCCCH-----HH----HHHHHHHHHHHHhcCCcEEEEEcCCHH
Confidence            37999999999976633     22    236778888999999999999888653

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.93  E-value=8.8e-10  Score=88.31  Aligned_cols=45  Identities=11%  Similarity=0.212  Sum_probs=36.0

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +|++++.|++++-+++.     .+    .++++.|+++.++.|+|||++.|-..
T Consensus       158 ~P~llllDEPt~~LD~~-----~~----~~i~~~i~~l~~~~g~tvi~vTHd~~  202 (242)
T d1oxxk2         158 DPSLLLLDEPFSNLDAR-----MR----DSARALVKEVQSRLGVTLLVVSHDPA  202 (242)
T ss_dssp             CCSEEEEESTTTTSCGG-----GH----HHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred             cccceeecCCccCCCHH-----HH----HHHHHHHHHHHhccCCEEEEEECCHH
Confidence            79999999999876542     12    26778888999999999999998643

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=5.6e-10  Score=90.20  Aligned_cols=45  Identities=13%  Similarity=0.113  Sum_probs=34.2

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +++++|+|++++.++..     .    -.+++..|+++.++++.|||++.|-..
T Consensus       169 ~p~ililDEpTs~LD~~-----~----~~~i~~~l~~l~~~~~~Tvi~itH~l~  213 (251)
T d1jj7a_         169 KPCVLILDDATSALDAN-----S----QLQVEQLLYESPERYSRSVLLITQHLS  213 (251)
T ss_dssp             CCSEEEEESTTTTCCHH-----H----HHHHHHHHHTCGGGGGCEEEEECSCHH
T ss_pred             CCcEEEecCcCcccChh-----h----HHHHHHHHHHHhhhcCCEEEEEeCCHH
Confidence            68999999999866431     1    235677788888888999998888654

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=98.93  E-value=2.9e-09  Score=85.43  Aligned_cols=28  Identities=18%  Similarity=0.124  Sum_probs=24.7

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|+||+|+|||||+.-++.-.
T Consensus        25 i~~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          25 AQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             ECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            8999999999999999999997766544

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=98.87  E-value=5e-09  Score=83.96  Aligned_cols=44  Identities=11%  Similarity=0.200  Sum_probs=32.7

Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      .+|+++++|++++-+++     ..    ..++.+.+++++++ |+|||++.|--
T Consensus       156 ~~P~lLllDEPt~gLD~-----~~----~~~i~~~i~~l~~~-g~til~~tH~l  199 (240)
T d1ji0a_         156 SRPKLLMMDEPSLGLAP-----IL----VSEVFEVIQKINQE-GTTILLVEQNA  199 (240)
T ss_dssp             TCCSEEEEECTTTTCCH-----HH----HHHHHHHHHHHHHT-TCCEEEEESCH
T ss_pred             hCCCEeeecCCCcCCCH-----HH----HHHHHHHHHHHHhC-CCEEEEEeCCH
Confidence            37999999999976633     22    23677788888665 99998888854

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=1.2e-08  Score=81.22  Aligned_cols=27  Identities=26%  Similarity=0.363  Sum_probs=24.6

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHH
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAV   96 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~   96 (226)
                      -+++|+++.|.||+|+|||||...++.
T Consensus        21 ~I~~Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          21 EVRAGEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             EEETTCEEECBCCTTSSHHHHHHHHHT
T ss_pred             EEcCCCEEEEECCCCCcHHHHHHHHhC
Confidence            488999999999999999999987765

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=2.5e-09  Score=85.78  Aligned_cols=28  Identities=32%  Similarity=0.270  Sum_probs=25.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+.+.|+|++|+|||||+.-++.-.
T Consensus        26 i~~Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          26 IKQGEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EcCCCEEEEECCCCCCHHHHHHHHHhcC
Confidence            8999999999999999999998776654

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=98.85  E-value=7.8e-09  Score=83.14  Aligned_cols=111  Identities=20%  Similarity=0.158  Sum_probs=66.8

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---cCchHHHHHHHHHHHHHhhCCCceEEEEc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---GFYTEQSAVINYLDKFVSEHKDVKVVIID  147 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---~~~~~~~~~l~~l~~~l~~~~~~~lvVID  147 (226)
                      .+.-.-++++||||+|||+++..++...         +.++++++...   ....+....+..+-+..+.. .+.+|+||
T Consensus        39 ~~~~~giLl~GppGtGKT~la~aia~~~---------~~~~~~i~~~~l~~~~~g~~~~~l~~~f~~a~~~-~p~Ii~iD  108 (247)
T d1ixza_          39 ARIPKGVLLVGPPGVGKTHLARAVAGEA---------RVPFITASGSDFVEMFVGVGAARVRDLFETAKRH-APCIVFID  108 (247)
T ss_dssp             CCCCSEEEEECCTTSSHHHHHHHHHHHT---------TCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTS-SSEEEEEE
T ss_pred             CCCCceEEEecCCCCChhHHHHHHHHHc---------CCCEEEEEhHHhhhccccHHHHHHHHHHHHHHHc-CCEEEEEE
Confidence            4444448999999999999999999765         45788888542   01112222334444444443 68899999


Q ss_pred             CCchhhhcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEE-Eeccc
Q 036464          148 SIAFHFRHGFV----DLALRTRVLSGIALKLMNLAKKFSLALL-EPNLA  191 (226)
Q Consensus       148 sl~~l~~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi-~~nq~  191 (226)
                      ++..+......    ......+.+..++..+..+....++.|| .||+.
T Consensus       109 eid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~vivi~tTn~~  157 (247)
T d1ixza_         109 EIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRP  157 (247)
T ss_dssp             THHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCG
T ss_pred             ChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCc
Confidence            99987654211    1122334455566566555455677776 45553

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=1.5e-08  Score=82.29  Aligned_cols=119  Identities=17%  Similarity=0.097  Sum_probs=73.2

Q ss_pred             CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---cCchHHHHHHHHHHHHHhhCCCceEEE
Q 036464           69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---GFYTEQSAVINYLDKFVSEHKDVKVVI  145 (226)
Q Consensus        69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---~~~~~~~~~l~~l~~~l~~~~~~~lvV  145 (226)
                      .|+++..-++|+||||+|||+++..+|...-         .++++++...   ....+....+..+-...... .+.+|+
T Consensus        36 ~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~---------~~~~~~~~~~l~~~~~~~~~~~l~~~f~~A~~~-~p~il~  105 (265)
T d1r7ra3          36 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ---------ANFISIKGPELLTMWFGESEANVREIFDKARQA-APCVLF  105 (265)
T ss_dssp             CCCCCCCEEEEBCCTTSSHHHHHHHHHHHTT---------CEEEEECHHHHHTSCTTTHHHHHHHHHHHHHHT-CSEEEE
T ss_pred             CCCCCCCeEEEECCCCCcchhHHHHHHHHhC---------CcEEEEEHHHhhhccccchHHHHHHHHHHHHhc-CCccee
Confidence            5788788899999999999999999998864         4677776421   01112222333333333443 789999


Q ss_pred             EcCCchhhhcC----cCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464          146 IDSIAFHFRHG----FVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA  197 (226)
Q Consensus       146 IDsl~~l~~~~----~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~  197 (226)
                      ||++..++...    ........+.+..++..+..+....++.||.|.+....+++
T Consensus       106 ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~  161 (265)
T d1r7ra3         106 FDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDP  161 (265)
T ss_dssp             ESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTTTSC
T ss_pred             HHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCchhCCH
Confidence            99999877532    11222333445667777767777778888887766555554

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.84  E-value=4.1e-09  Score=85.07  Aligned_cols=29  Identities=17%  Similarity=0.228  Sum_probs=25.1

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+.+.|+||+|+|||||+.-++.-.
T Consensus        37 ~i~~Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          37 KIPAGKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             EECTTCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             EEcCCCEEEEECCCCChHHHHHHHHhccc
Confidence            38999999999999999999997666544

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=98.84  E-value=8e-09  Score=83.50  Aligned_cols=117  Identities=14%  Similarity=0.058  Sum_probs=70.8

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC---chHHHHHHHHHHHHHhhCCCceEEEE
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF---YTEQSAVINYLDKFVSEHKDVKVVII  146 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~---~~~~~~~l~~l~~~l~~~~~~~lvVI  146 (226)
                      |++...-++++||||+|||+++..+|...-         .++++++.....   ..+....+..+-+..++. .|.+|+|
T Consensus        41 g~~~~~~iLL~GppGtGKT~la~~iA~~~~---------~~~~~i~~~~l~~~~~g~~~~~l~~~f~~A~~~-~P~il~i  110 (256)
T d1lv7a_          41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAK---------VPFFTISGSDFVEMFVGVGASRVRDMFEQAKKA-APCIIFI  110 (256)
T ss_dssp             --CCCCEEEEECCTTSCHHHHHHHHHHHHT---------CCEEEECSCSSTTSCCCCCHHHHHHHHHHHHTT-CSEEEEE
T ss_pred             CCCCCCeEEeeCCCCCCccHHHHHHHHHcC---------CCEEEEEhHHhhhcchhHHHHHHHHHHHHHHHc-CCEEEEE
Confidence            344445588999999999999999998763         468888864211   011122344444444444 7899999


Q ss_pred             cCCchhhhcCcC----ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464          147 DSIAFHFRHGFV----DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL  196 (226)
Q Consensus       147 Dsl~~l~~~~~~----~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~  196 (226)
                      |++..+......    ......+.+..++..+..+....++.||.|.+....++
T Consensus       111 DeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v~vIatTn~~~~ld  164 (256)
T d1lv7a_         111 DEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLD  164 (256)
T ss_dssp             TTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSC
T ss_pred             EChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCcccCC
Confidence            999987653221    11233445566666666555566777774443333333

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.83  E-value=3.4e-09  Score=82.70  Aligned_cols=44  Identities=5%  Similarity=0.236  Sum_probs=33.3

Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA  191 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~  191 (226)
                      .+++++++|++++-++..  .   +    .++++.|++++++.+++||.++|-
T Consensus       142 ~~~~llllDEPt~gLD~~--~---~----~~i~~~l~~~~~~~~~~ii~~~~~  185 (200)
T d1sgwa_         142 VNAEIYVLDDPVVAIDED--S---K----HKVLKSILEILKEKGIVIISSREE  185 (200)
T ss_dssp             SCCSEEEEESTTTTSCTT--T---H----HHHHHHHHHHHHHHSEEEEEESSC
T ss_pred             cCCCEEEEcCcccccCHH--H---H----HHHHHHHHHHHhCCCEEEEEEech
Confidence            379999999999876442  1   2    257778888888888888887764

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.81  E-value=1.4e-08  Score=81.92  Aligned_cols=29  Identities=28%  Similarity=0.225  Sum_probs=25.7

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+++|+++.|.||+|+|||||+..++...
T Consensus        26 ~v~~Gei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          26 SVNKGDVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             EEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EECCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            48999999999999999999998777654

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.78  E-value=2e-08  Score=81.14  Aligned_cols=26  Identities=23%  Similarity=0.263  Sum_probs=24.0

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAV   96 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~   96 (226)
                      +++|+++.|.||+|+|||||+..++.
T Consensus        25 i~~GEi~~iiG~sGsGKSTLl~~i~G   50 (258)
T d1b0ua_          25 ARAGDVISIIGSSGSGKSTFLRCINF   50 (258)
T ss_dssp             ECTTCEEEEECCTTSSHHHHHHHHTT
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHc
Confidence            78999999999999999999987764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=98.78  E-value=2e-08  Score=80.26  Aligned_cols=48  Identities=10%  Similarity=0.065  Sum_probs=34.0

Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCC
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANL  196 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~  196 (226)
                      .+|+++++|++++-++.     ..+    .++...+++++++ |.|||++.|-.....
T Consensus       150 ~~p~illLDEPt~gLD~-----~~~----~~i~~~i~~~~~~-g~tii~~tH~l~~~~  197 (238)
T d1vpla_         150 VNPRLAILDEPTSGLDV-----LNA----REVRKILKQASQE-GLTILVSSHNMLEVE  197 (238)
T ss_dssp             TCCSEEEEESTTTTCCH-----HHH----HHHHHHHHHHHHT-TCEEEEEECCHHHHT
T ss_pred             cCCCEEEecCCCCCCCH-----HHH----HHHHHHHHHHHhc-CCEEEEEeCCHHHHH
Confidence            37999999999976532     222    2456666676654 899999998876544

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.75  E-value=1.6e-08  Score=80.63  Aligned_cols=44  Identities=9%  Similarity=0.130  Sum_probs=34.7

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      +|+++++|++++-+++     ..    ...+...+++++++++++||++.|-.
T Consensus       144 ~P~illlDEPts~LD~-----~~----~~~i~~~i~~l~~~~g~tvi~vtHd~  187 (240)
T d2onka1         144 QPRLLLLDEPLSAVDL-----KT----KGVLMEELRFVQREFDVPILHVTHDL  187 (240)
T ss_dssp             CCSSBEEESTTSSCCH-----HH----HHHHHHHHHHHHHHHTCCEEEEESCH
T ss_pred             cCCceEecCccccCCH-----HH----HHHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            7999999999976533     22    23677888899999999999888864

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.73  E-value=2.4e-08  Score=80.63  Aligned_cols=118  Identities=13%  Similarity=0.089  Sum_probs=69.5

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc---cCchHHHHHHHHHHHHHhhCCCceEEEE
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL---GFYTEQSAVINYLDKFVSEHKDVKVVII  146 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~---~~~~~~~~~l~~l~~~l~~~~~~~lvVI  146 (226)
                      |+++-.-++|+||||+|||+++..+|...-         .++++++...   ....+....+..+-+..... .+.+|+|
T Consensus        34 g~~~~~giLL~GppGtGKT~l~~ala~~~~---------~~~~~i~~~~l~~~~~g~~~~~l~~~f~~A~~~-~p~il~i  103 (258)
T d1e32a2          34 GVKPPRGILLYGPPGTGKTLIARAVANETG---------AFFFLINGPEIMSKLAGESESNLRKAFEEAEKN-APAIIFI  103 (258)
T ss_dssp             CCCCCCEEEEECCTTSSHHHHHHHHHHHTT---------CEEEEECHHHHTTSCTTHHHHHHHHHHHHHHHT-CSEEEEE
T ss_pred             CCCCCceeEEecCCCCCchHHHHHHHHHhC---------CeEEEEEchhhcccccccHHHHHHHHHHHHHhc-CCeEEEe
Confidence            555555589999999999999999998763         4677777432   11122223344444444444 7899999


Q ss_pred             cCCchhhhcCcC-ChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCC
Q 036464          147 DSIAFHFRHGFV-DLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLA  197 (226)
Q Consensus       147 Dsl~~l~~~~~~-~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~  197 (226)
                      |++..++..... ........+..++..+.......++.||.|.+....++.
T Consensus       104 Deid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~ld~  155 (258)
T d1e32a2         104 DELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP  155 (258)
T ss_dssp             SSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGGSCG
T ss_pred             hhhhhhccCCCCCCCchHHHHHHHhccccccccccCCccEEEeCCCccccch
Confidence            999987643211 111122234444444444444566677744444444443

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.69  E-value=1.1e-08  Score=82.60  Aligned_cols=26  Identities=27%  Similarity=0.244  Sum_probs=23.3

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAV   96 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~   96 (226)
                      +++|+.+.|+|++|+|||||+.-++.
T Consensus        41 i~~Ge~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          41 IEKGETVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             ECTTCEEEEECSTTSSHHHHHTTTTT
T ss_pred             EcCCCEEEEECCCCCcHHHHHHHHHh
Confidence            89999999999999999999865554

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.60  E-value=6.9e-08  Score=75.72  Aligned_cols=99  Identities=16%  Similarity=0.165  Sum_probs=61.9

Q ss_pred             EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHH-H--HHHHHHHHhhCCCceEEEEcCCchhh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSA-V--INYLDKFVSEHKDVKVVIIDSIAFHF  153 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~-~--l~~l~~~l~~~~~~~lvVIDsl~~l~  153 (226)
                      +.|+|++|+|||+|+..++....      ..+..++|++..  .+...+. .  -....++.+.....++++||.+..+.
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~dll~iDDi~~i~  110 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAK------KRGYRVIYSSAD--DFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLS  110 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH------HTTCCEEEEEHH--HHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGT
T ss_pred             EEEECCCCCcHHHHHHHHHHHhc------cCccceEEechH--HHHHHHHHHHHccchhhHHHHHhhccchhhhhhhhhc
Confidence            67999999999999999999886      467789999854  2222110 0  01122222222357999999998653


Q ss_pred             hcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          154 RHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       154 ~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      ..     ...+..   ++ .+-+.+.+.+..+|+++...
T Consensus       111 ~~-----~~~~~~---lf-~lin~~~~~~~~iiits~~~  140 (213)
T d1l8qa2         111 GK-----ERTQIE---FF-HIFNTLYLLEKQIILASDRH  140 (213)
T ss_dssp             TC-----HHHHHH---HH-HHHHHHHHTTCEEEEEESSC
T ss_pred             Cc-----hHHHHH---HH-HHHHHHhhccceEEEecCCc
Confidence            22     112222   22 34444567788888877654

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.57  E-value=2.1e-07  Score=69.67  Aligned_cols=43  Identities=14%  Similarity=0.068  Sum_probs=31.0

Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      .+++++++|+++.....   .        ..+...|.++.++.+.++|++.|..
T Consensus        98 ~~~~vlllDE~~~~~~~---~--------~~~~~~l~~~l~~~~~~il~~~h~~  140 (178)
T d1ye8a1          98 DRRKVIIIDEIGKMELF---S--------KKFRDLVRQIMHDPNVNVVATIPIR  140 (178)
T ss_dssp             CTTCEEEECCCSTTGGG---C--------HHHHHHHHHHHTCTTSEEEEECCSS
T ss_pred             cCCCceeecCCCccchh---h--------HHHHHHHHHHhccCCCEEEEEEccH
Confidence            37899999998744321   1        1345577777788899999998865

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=98.51  E-value=4.8e-08  Score=81.13  Aligned_cols=116  Identities=12%  Similarity=-0.008  Sum_probs=69.6

Q ss_pred             hhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc-cc-----CchHHHHHHHHHHHH
Q 036464           61 ADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC-LG-----FYTEQSAVINYLDKF  134 (226)
Q Consensus        61 ~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e-~~-----~~~~~~~~l~~l~~~  134 (226)
                      +.+.+.++ .-.+..+.+++||||+|||.++..+|..+.       .+.+-+.++.. +.     .+...   +..+-+.
T Consensus       111 ~~~~~~~~-~~~~~g~~l~~G~pG~GKT~la~ala~~~~-------~~~~~~~~~~~~~~~~~~G~~e~~---~~~~f~~  179 (321)
T d1w44a_         111 PVVAEFGG-HRYASGMVIVTGKGNSGKTPLVHALGEALG-------GKDKYATVRFGEPLSGYNTDFNVF---VDDIARA  179 (321)
T ss_dssp             CEEEEETT-EEEESEEEEEECSSSSCHHHHHHHHHHHHH-------TTSCCEEEEBSCSSTTCBCCHHHH---HHHHHHH
T ss_pred             hHHHHHhh-cccCCceEEEECCCCccHHHHHHHHHHHhc-------CCCCeEEEEhhHhhhcccchHHHH---HHHHHHH
Confidence            44455553 334455677799999999999999998863       12222334432 11     12222   2333222


Q ss_pred             HhhCCCceEEEEcCCchhhhcCcC--ChHHHHHHHHHHHHHHHHHHHHcCCEEEEecc
Q 036464          135 VSEHKDVKVVIIDSIAFHFRHGFV--DLALRTRVLSGIALKLMNLAKKFSLALLEPNL  190 (226)
Q Consensus       135 l~~~~~~~lvVIDsl~~l~~~~~~--~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq  190 (226)
                      .++   +.+|+||++.++......  ......+.+++++..+..+....++.||.+++
T Consensus       180 a~~---~~ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN  234 (321)
T d1w44a_         180 MLQ---HRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLN  234 (321)
T ss_dssp             HHH---CSEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred             Hhh---ccEEEeehhhhhccccccCCCCCcchhhhhhhhhhccccccCCCeEEEEeCC
Confidence            332   469999999987654321  11122356888888999888888999997765

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.50  E-value=9e-07  Score=68.88  Aligned_cols=74  Identities=19%  Similarity=0.147  Sum_probs=51.3

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc--hHHHHHH------------------HHH
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY--TEQSAVI------------------NYL  131 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~--~~~~~~l------------------~~l  131 (226)
                      +.+.++.++||+|+||||.+-.+|..+.      ..+.+|..|+...+..  .+|++..                  ..+
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~------~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~   77 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ------NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDPAALA   77 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHH------TTTCCEEEECCCCSSTTHHHHHHHHHHHHTCCEECCCTTCCHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH------HCCCcEEEEEeccccccchhhHhhcccccCceEEeccCCccHHHHH
Confidence            3578999999999999999999998876      4678999998764332  2343221                  111


Q ss_pred             H---HHHhhCCCceEEEEcCCchh
Q 036464          132 D---KFVSEHKDVKVVIIDSIAFH  152 (226)
Q Consensus       132 ~---~~l~~~~~~~lvVIDsl~~l  152 (226)
                      .   ...+. .+.++|+||.....
T Consensus        78 ~~~~~~~~~-~~~d~ilIDTaGr~  100 (207)
T d1okkd2          78 YDAVQAMKA-RGYDLLFVDTAGRL  100 (207)
T ss_dssp             HHHHHHHHH-HTCSEEEECCCCCC
T ss_pred             HHHHHHHHH-CCCCEEEcCccccc
Confidence            1   11222 25799999999853

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.44  E-value=4.6e-08  Score=79.95  Aligned_cols=28  Identities=32%  Similarity=0.367  Sum_probs=25.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+++.|+||+|+|||||+..++...
T Consensus        59 i~~Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          59 IEKGEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             ECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            8999999999999999999998776544

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.40  E-value=3.3e-07  Score=73.28  Aligned_cols=71  Identities=17%  Similarity=0.078  Sum_probs=46.0

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc-c-cC-chHH-HHHHHHHHHHHhhCCCceEEEEcCCc
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC-L-GF-YTEQ-SAVINYLDKFVSEHKDVKVVIIDSIA  150 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e-~-~~-~~~~-~~~l~~l~~~l~~~~~~~lvVIDsl~  150 (226)
                      .-++|+||||+|||+++..+|...-         .+++.+++. . .. .... ...+..+-+..... .+.+|+||++.
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~~~---------~~~~~i~~~~~~~g~~~~~~~~~i~~if~~A~~~-~p~il~iDEid  110 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEESN---------FPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKS-QLSCVVVDDIE  110 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT---------CSEEEEECGGGCTTCCHHHHHHHHHHHHHHHHTS-SEEEEEECCHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhccc---------ccccccccccccccccccchhhhhhhhhhhhhhc-ccceeehhhhh
Confidence            4578999999999999999998753         356777642 1 11 1111 12333333333333 68999999999


Q ss_pred             hhhhc
Q 036464          151 FHFRH  155 (226)
Q Consensus       151 ~l~~~  155 (226)
                      .+...
T Consensus       111 ~l~~~  115 (246)
T d1d2na_         111 RLLDY  115 (246)
T ss_dssp             HHTTC
T ss_pred             hHhhh
Confidence            87643

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.38  E-value=1.5e-06  Score=67.73  Aligned_cols=72  Identities=24%  Similarity=0.142  Sum_probs=50.1

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCc--hHHHHH---------------------HHH
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFY--TEQSAV---------------------INY  130 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~--~~~~~~---------------------l~~  130 (226)
                      -.++.++||+|+||||.+-.+|..+.      ..+.+|..|++..+..  .+|+..                     +.+
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~~------~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~   82 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQFE------QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFD   82 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHHH------TTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH------HCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHH
Confidence            46899999999999999999998875      4678999999764333  233321                     112


Q ss_pred             HHHHHhhCCCceEEEEcCCchh
Q 036464          131 LDKFVSEHKDVKVVIIDSIAFH  152 (226)
Q Consensus       131 l~~~l~~~~~~~lvVIDsl~~l  152 (226)
                      ..+..+. .+.++|+||.....
T Consensus        83 ~~~~a~~-~~~d~ilIDTaGr~  103 (211)
T d2qy9a2          83 AIQAAKA-RNIDVLIADTAGRL  103 (211)
T ss_dssp             HHHHHHH-TTCSEEEECCCCCG
T ss_pred             HHHHHHH-cCCCEEEeccCCCc
Confidence            2222222 36899999998843

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.31  E-value=2.4e-06  Score=66.43  Aligned_cols=42  Identities=24%  Similarity=0.328  Sum_probs=35.7

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG  119 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~  119 (226)
                      ....++.++||+|+||||.+..+|..+.      ..+.+|..++...+
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~------~~g~kV~lit~Dt~   49 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYK------GKGRRPLLVAADTQ   49 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHH------HTTCCEEEEECCSS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHH------HCCCcEEEEecccc
Confidence            4567899999999999999999998886      46789999997643

>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.30  E-value=5.1e-07  Score=56.86  Aligned_cols=49  Identities=22%  Similarity=0.317  Sum_probs=42.7

Q ss_pred             CCCCCC---CCCHHHHHHHHhCCCccHHHHHhCChhHHhh----chHhHHHHHHHh
Q 036464            1 MEVSKL---PISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQEE   49 (226)
Q Consensus         1 ~~~~~l---~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----~~~~a~~l~~~~   49 (226)
                      +|++.|   ++++.++++|+++||.|+++++.+++.+|.+    +-.+|.++.+..
T Consensus         1 ~pi~~L~~~Gig~~~~~kL~~aG~~Tve~ia~~t~~~L~~i~Gi~e~~a~KIi~~A   56 (64)
T d1szpa1           1 VPIEKLQVNGITMADVKKLRESGLHTAEAVAYAPRKDLLEIKGISEAKADKLLNEA   56 (64)
T ss_dssp             CCGGGGCCTTCCHHHHHHHHTTSCCSHHHHHHSCSHHHHTSTTCCHHHHHHHHHHH
T ss_pred             CCHHHHhHCCCCHHHHHHHHHcCCCcHHHHHhCCHHHHHHcCCCCHHHHHHHHHHH
Confidence            688888   5999999999999999999999999999998    446777776654

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.21  E-value=6.3e-06  Score=64.11  Aligned_cols=41  Identities=27%  Similarity=0.177  Sum_probs=30.4

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG  119 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~  119 (226)
                      ...++.++||+|+||||.+-.+|..+.      ..+.+|..|++..+
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~~------~~g~kV~lit~Dt~   51 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFYK------KKGFKVGLVGADVY   51 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHHH------HTTCCEEEEECCCS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH------HCCCceEEEEeecc
Confidence            457899999999999999999998775      45788999987643

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.20  E-value=5.7e-06  Score=59.98  Aligned_cols=24  Identities=21%  Similarity=0.350  Sum_probs=20.9

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHh
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .++.|+|+|||||||++..++...
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            578999999999999999887654

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.18  E-value=2.4e-06  Score=64.35  Aligned_cols=63  Identities=19%  Similarity=0.153  Sum_probs=41.3

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCc
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIA  150 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~  150 (226)
                      +.-.+++++|+|||||||++.+++...           +..+|+......  .-.....+...+...   ..||||...
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~~-----------~~~~i~~D~~~~--~~~~~~~~~~~l~~g---~~vIiD~t~   74 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVSA-----------GYVHVNRDTLGS--WQRCVSSCQAALRQG---KRVVIDNTN   74 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGGG-----------TCEEEEHHHHCS--HHHHHHHHHHHHHTT---CCEEEESCC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc-----------CCEEEchHHHHH--HHHHHHHHHHHHHCC---CCceeeCcC
Confidence            556799999999999999998775432           346676442111  122445566666653   468889665

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.14  E-value=8.2e-06  Score=63.53  Aligned_cols=41  Identities=24%  Similarity=0.082  Sum_probs=34.5

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG  119 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~  119 (226)
                      +-.++.++||+|+||||.+-.+|..+.      ..+.+|..|++..+
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa~~~------~~~~kV~lit~Dt~   50 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAKMFV------DEGKSVVLAAADTF   50 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHH------HTTCCEEEEEECTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH------HCCCceEEEeeccc
Confidence            456899999999999999999998875      46789999987643

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=4.8e-05  Score=59.91  Aligned_cols=113  Identities=14%  Similarity=-0.049  Sum_probs=65.4

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccc-------cCC-CCCeEEEEeccccCchHH-----HHHHHHHHHHHhhCC
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVE-------FGG-LGGKAIYIGKCLGFYTEQ-----SAVINYLDKFVSEHK  139 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~-------~~~-~~~~vlyi~~e~~~~~~~-----~~~l~~l~~~l~~~~  139 (226)
                      .+.+.+|+||+.+|||+++.+++..+.+-..       ... .-..-+|......+...+     ...+.++.+.+....
T Consensus        40 ~~~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a~~~~~d~I~~~~~~~d~~~~~~S~F~~E~~~~~~il~~~~  119 (234)
T d1wb9a2          40 QRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNAT  119 (234)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCC
T ss_pred             CceEEEEeccCchhhHHHHHHHHHHHHHHHcCCeEecCceecccchhheeEEccCcccccchhHHHHHHHHHHHHHHhcc
Confidence            3578999999999999999999988864210       000 001122222111111110     123556667776655


Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATT  193 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~  193 (226)
                      +-.+|+||++..-..+     .++...   ....|..+..+.++.++++.|...
T Consensus       120 ~~sLvliDE~~~gT~~-----~eg~~l---~~a~l~~l~~~~~~~~i~tTH~~~  165 (234)
T d1wb9a2         120 EYSLVLMDEIGRGTST-----YDGLSL---AWACAENLANKIKALTLFATHYFE  165 (234)
T ss_dssp             TTEEEEEESCCCCSSS-----SHHHHH---HHHHHHHHHHTTCCEEEEECSCGG
T ss_pred             cccEEeecccccCCCh-----hhhhHH---HHHhhhhhhccccceEEEecchHH
Confidence            5689999999853322     122211   223455677778888999988753

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.96  E-value=2e-05  Score=61.69  Aligned_cols=108  Identities=15%  Similarity=0.015  Sum_probs=59.4

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhcccc-------ccCC-CCCeEEEEeccccCch-----HHHHHHHHHHHHHhhCCCc
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPV-------EFGG-LGGKAIYIGKCLGFYT-----EQSAVINYLDKFVSEHKDV  141 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~-------~~~~-~~~~vlyi~~e~~~~~-----~~~~~l~~l~~~l~~~~~~  141 (226)
                      +++.|+||+.+|||+++.+++..+.+-.       +... .--.-+|......+..     .-...+..+...+....+-
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~~~i~~~d~I~~~~~~~d~~~~~~StF~~el~~~~~il~~~~~~  115 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATEN  115 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCCTT
T ss_pred             cEEEEECCCccccchhhhhhHHHHHHHhccceeecCceEEeecceEEEEECCCccccCCccHHHHhHHHHHHHhccCCCC
Confidence            4899999999999999999988876421       0000 0011122211100111     0113356677777765556


Q ss_pred             eEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464          142 KVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA  191 (226)
Q Consensus       142 ~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~  191 (226)
                      .||+||++..-.     +..+.......++   ..+++ .++.++++.|.
T Consensus       116 sLvliDE~~~gT-----~~~eg~ala~ail---e~L~~-~~~~~i~tTH~  156 (224)
T d1ewqa2         116 SLVLLDEVGRGT-----SSLDGVAIATAVA---EALHE-RRAYTLFATHY  156 (224)
T ss_dssp             EEEEEESTTTTS-----CHHHHHHHHHHHH---HHHHH-HTCEEEEECCC
T ss_pred             cEEeecccccCc-----chhhhcchHHHHH---HHHhh-cCcceEEeeec
Confidence            899999998432     3333433333333   34444 45666666665

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=97.96  E-value=9.4e-06  Score=64.33  Aligned_cols=80  Identities=20%  Similarity=0.140  Sum_probs=48.6

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHH--------------------HHHHHHHHHHH
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ--------------------SAVINYLDKFV  135 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~--------------------~~~l~~l~~~l  135 (226)
                      ++.|+||||+|||+++..++..+.-..........+.|++.........                    ......+....
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  127 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNL  127 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeeccccccchhhHHHHHhhhcccccccccchHHHHHHHHHHHH
Confidence            4567899999999999999987632111112345677777442111111                    12234444555


Q ss_pred             hhCCCceEEEEcCCchhhhc
Q 036464          136 SEHKDVKVVIIDSIAFHFRH  155 (226)
Q Consensus       136 ~~~~~~~lvVIDsl~~l~~~  155 (226)
                      +......++++|.+..+...
T Consensus       128 ~~~~~~~~~iide~d~l~~~  147 (287)
T d1w5sa2         128 YVENHYLLVILDEFQSMLSS  147 (287)
T ss_dssp             HHHTCEEEEEEESTHHHHSC
T ss_pred             HhccCccccceeEEEEeccc
Confidence            54456789999999976543

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.91  E-value=3.2e-05  Score=58.74  Aligned_cols=36  Identities=19%  Similarity=0.232  Sum_probs=27.6

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK  116 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~  116 (226)
                      .++.++|.||+||||++.+++....      ..+.++.-++.
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l~------~~~~~~~~~~~   38 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYLN------FIGVPTREFNV   38 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH------HTTCCEEEEEH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH------hcCCCCeEEcc
Confidence            4789999999999999999997764      23445555553

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.91  E-value=3e-05  Score=60.87  Aligned_cols=37  Identities=24%  Similarity=0.276  Sum_probs=29.1

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      .....++|+||||+|||+++..+|...-         ..+.+++..
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~~~---------~~~~~~~~~   86 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQELG---------YDILEQNAS   86 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHHTT---------CEEEEECTT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHHH---------hhhhccccc
Confidence            3445789999999999999999998763         456777643

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.90  E-value=1.3e-05  Score=65.81  Aligned_cols=75  Identities=19%  Similarity=0.182  Sum_probs=43.0

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC----chHHH-HHHHHHHHHH----hhCCCc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF----YTEQS-AVINYLDKFV----SEHKDV  141 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~----~~~~~-~~l~~l~~~l----~~~~~~  141 (226)
                      .|++ -++++||||+|||.+|.++|..+.         .+.+.++...+.    ..... .....+-...    ....++
T Consensus        47 ~~~~-~iLl~GPpG~GKT~lAkalA~~~~---------~~~~~i~~s~~~~~~~~~~~~~~~~~~~f~~a~~~~~~~~~~  116 (309)
T d1ofha_          47 VTPK-NILMIGPTGVGKTEIARRLAKLAN---------APFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQN  116 (309)
T ss_dssp             CCCC-CEEEECCTTSSHHHHHHHHHHHHT---------CCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHH
T ss_pred             CCCc-eEEEECCCCCCHHHHHHHHhhccc---------cchhcccccccccceeEeeeccccccccchhhhcccccccCC
Confidence            3444 456899999999999999998764         345666643110    10100 1112221111    111135


Q ss_pred             eEEEEcCCchhhhc
Q 036464          142 KVVIIDSIAFHFRH  155 (226)
Q Consensus       142 ~lvVIDsl~~l~~~  155 (226)
                      .+|+||++..+...
T Consensus       117 ~IIf~DEIdki~~~  130 (309)
T d1ofha_         117 GIVFIDEIDKICKK  130 (309)
T ss_dssp             CEEEEECGGGGSCC
T ss_pred             ceEEehhhhhhhhh
Confidence            89999999987643

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=97.87  E-value=3.9e-05  Score=61.85  Aligned_cols=56  Identities=21%  Similarity=0.302  Sum_probs=45.6

Q ss_pred             ccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           52 SLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        52 ~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      ....+.||++.+|-++-  +-+|+-..|.|++|+|||+++.+++.+..      ....-++|.-
T Consensus        47 ~~~~l~TGi~~ID~l~p--ig~GQr~~Ifg~~g~GKt~l~~~~~~~~~------~~~~v~V~~~  102 (276)
T d1fx0a3          47 VYEPLQTGLIAIDAMIP--VGRGQRELIIGDRQTGKTAVATDTILNQQ------GQNVICVYVA  102 (276)
T ss_dssp             CCSBCCCSCTTTTTTSC--CBTTCBCBEEESSSSSHHHHHHHHHHTCC------TTTCEEEEEE
T ss_pred             CCccccccceEEecccc--ccCCceEeeccCCCCChHHHHHHHHhhhc------ccCceeeeee
Confidence            45679999999999986  88899999999999999999999877654      2344566654

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.85  E-value=2e-05  Score=61.49  Aligned_cols=62  Identities=21%  Similarity=0.226  Sum_probs=41.8

Q ss_pred             EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCchhh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFHF  153 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l~  153 (226)
                      ++|+||||+|||+++..++..+-         .....++.......      ..+...+....+-..++||++..+.
T Consensus        38 ~L~~GPpGtGKT~lA~~la~~~~---------~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ide~~~~~   99 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAHIIASELQ---------TNIHVTSGPVLVKQ------GDMAAILTSLERGDVLFIDEIHRLN   99 (238)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHT---------CCEEEEETTTCCSH------HHHHHHHHHCCTTCEEEEETGGGCC
T ss_pred             EEEECCCCCcHHHHHHHHHhccC---------CCcccccCcccccH------HHHHHHHHhhccCCchHHHHHHHhh
Confidence            78999999999999999998864         34556664322222      1233334444456889999998653

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.85  E-value=4.3e-05  Score=61.85  Aligned_cols=47  Identities=23%  Similarity=0.289  Sum_probs=42.0

Q ss_pred             cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      .....+.||++.+|-++-  +-+|+-..|.|++|+|||+++++++.+..
T Consensus        47 ~i~e~l~TGIraID~l~p--ig~GQr~~If~~~g~GKt~ll~~~~~~~~   93 (285)
T d2jdia3          47 SVREPMQTGIKAVDSLVP--IGRGQRELIIGDRQTGKTSIAIDTIINQK   93 (285)
T ss_dssp             CCCSBCCCSCHHHHHHSC--CBTTCBCEEEESTTSSHHHHHHHHHHHTH
T ss_pred             CCCcccccCceEEecccC--ccCCCEEEeecCCCCChHHHHHHHHHhHH
Confidence            346789999999999986  88999999999999999999999988753

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=4.1e-05  Score=60.09  Aligned_cols=24  Identities=29%  Similarity=0.440  Sum_probs=21.3

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhc
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      .++|+||||+|||+++..++..+.
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhc
Confidence            578999999999999998887764

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.79  E-value=2.9e-05  Score=60.39  Aligned_cols=70  Identities=19%  Similarity=0.242  Sum_probs=41.3

Q ss_pred             EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHH-HHHHHHHh----hCCCceEEEEcCCch
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVI-NYLDKFVS----EHKDVKVVIIDSIAF  151 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l-~~l~~~l~----~~~~~~lvVIDsl~~  151 (226)
                      ++|+||||+|||+++..+|..+.-.    .....++++++..   ......+ ........    ...+..+++||++..
T Consensus        48 lll~Gp~G~GKTtla~~iak~l~~~----~~~~~~~e~n~s~---~~~~~~~~~~~~~~~~~~~~~~~~~~iilide~d~  120 (231)
T d1iqpa2          48 LLFAGPPGVGKTTAALALARELFGE----NWRHNFLELNASD---ERGINVIREKVKEFARTKPIGGASFKIIFLDEADA  120 (231)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHHGG----GHHHHEEEEETTC---HHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGG
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHhc----ccCCCeeEEecCc---ccchhHHHHHHHHHHhhhhccCCCceEEeehhhhh
Confidence            7899999999999999999876410    1224567776531   1111111 11111111    123678999999975


Q ss_pred             hh
Q 036464          152 HF  153 (226)
Q Consensus       152 l~  153 (226)
                      +.
T Consensus       121 ~~  122 (231)
T d1iqpa2         121 LT  122 (231)
T ss_dssp             SC
T ss_pred             cc
Confidence            43

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.75  E-value=0.00039  Score=55.73  Aligned_cols=58  Identities=24%  Similarity=0.273  Sum_probs=48.0

Q ss_pred             cccCceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           51 ESLARITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        51 ~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      .....+.||++.+|-++-  +-+|+-..|.|++|+|||+|+.+++.+.+.     ....-++|.-
T Consensus        47 ~i~~~l~TGIraID~l~p--igkGQr~~If~~~g~GKt~l~~~i~~~~~~-----~~~~v~V~~~  104 (276)
T d2jdid3          47 VEQEILVTGIKVVDLLAP--YAKGGKIGLFGGAGVGKTVLIMELINNVAK-----AHGGYSVFAG  104 (276)
T ss_dssp             CCCCEECCSCHHHHHHSC--EETTCEEEEEECTTSSHHHHHHHHHHHHTT-----TCSSEEEEEE
T ss_pred             CCCcccccCceeeeeecc--ccCCCEEEeeCCCCCCHHHHHHHHHHHHHh-----hCCCeEEEEE
Confidence            346789999999999986  778999999999999999999999999752     2334567764

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=1.1e-05  Score=59.25  Aligned_cols=35  Identities=23%  Similarity=0.197  Sum_probs=29.2

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK  116 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~  116 (226)
                      ++.|+|+||||||||+.+++....      ..+.++.++..
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~------~~g~~v~v~~~   38 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALC------ARGIRPGLIKH   38 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH------HTTCCEEEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH------HCCCeEEEecc
Confidence            789999999999999999998875      45667777653

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.73  E-value=4.3e-05  Score=59.13  Aligned_cols=71  Identities=24%  Similarity=0.228  Sum_probs=42.8

Q ss_pred             EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhh-----CCCceEEEEcCCch
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSE-----HKDVKVVIIDSIAF  151 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~-----~~~~~lvVIDsl~~  151 (226)
                      ++|+||||+|||+++.-++..+.-.    .....++.++.........  ....+..+...     ..+.+++|||++..
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~~~----~~~~~~~~~n~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~kviiiDe~d~  112 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELLGR----SYADGVLELNASDDRGIDV--VRNQIKHFAQKKLHLPPGKHKIVILDEADS  112 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHGG----GHHHHEEEECTTSCCSHHH--HHTHHHHHHHBCCCCCTTCCEEEEEESGGG
T ss_pred             EEEECCCCCCchhhHHHHHHHHhcc----ccccccccccccccCCcee--hhhHHHHHHHhhccCCCcceEEEEEecccc
Confidence            7899999999999999998876411    1123466666432111111  12223333322     23567999999986


Q ss_pred             hh
Q 036464          152 HF  153 (226)
Q Consensus       152 l~  153 (226)
                      +.
T Consensus       113 ~~  114 (224)
T d1sxjb2         113 MT  114 (224)
T ss_dssp             SC
T ss_pred             cc
Confidence            53

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=1.1e-05  Score=59.65  Aligned_cols=24  Identities=29%  Similarity=0.391  Sum_probs=22.0

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhc
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      .+.|+||||+|||||+.+++..+.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHH
Confidence            578999999999999999998875

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=9.2e-05  Score=56.53  Aligned_cols=112  Identities=15%  Similarity=0.103  Sum_probs=63.6

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccc-cCCCCCeEEEEeccc----cCchHHH-HHHHHHHHHHhhCCCceEEEE
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVE-FGGLGGKAIYIGKCL----GFYTEQS-AVINYLDKFVSEHKDVKVVII  146 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~-~~~~~~~vlyi~~e~----~~~~~~~-~~l~~l~~~l~~~~~~~lvVI  146 (226)
                      ...-.+|+|+||+|||.++..+|..+.-... ..-.+..++.+|...    ..+..+. +.+..+-+-+....+--+++|
T Consensus        42 ~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~~~~~iILfI  121 (195)
T d1jbka_          42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFI  121 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEE
T ss_pred             CCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhccCCccHHHHHHHHHHHHHHhcCCCcEEEEc
Confidence            4456899999999999999999988763110 011345666676331    2233332 123333333333323458899


Q ss_pred             cCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecc
Q 036464          147 DSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNL  190 (226)
Q Consensus       147 Dsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq  190 (226)
                      |++..++......  ..    ..+...|+....+-.+.+|.+..
T Consensus       122 Deih~l~~~g~~~--g~----~d~~~~Lkp~L~rg~l~~IgatT  159 (195)
T d1jbka_         122 DELHTMVGAGKAD--GA----MDAGNMLKPALARGELHCVGATT  159 (195)
T ss_dssp             ETGGGGTT--------C----CCCHHHHHHHHHTTSCCEEEEEC
T ss_pred             chHHHHhcCCCCC--Cc----ccHHHHHHHHHhCCCceEEecCC
Confidence            9999987542110  00    12445677666667777776654

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=97.68  E-value=2.6e-05  Score=55.14  Aligned_cols=40  Identities=15%  Similarity=0.071  Sum_probs=29.3

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      +++|..+.|++|+|+|||..+...+.....     ..+.+++++.
T Consensus         4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~~-----~~~~~vli~~   43 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRFLPQILAECA-----RRRLRTLVLA   43 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTHHHHHHHHHH-----HTTCCEEEEE
T ss_pred             HHcCCcEEEEcCCCCChhHHHHHHHHHHhh-----hcCceeeeee
Confidence            567899999999999999777655443331     3456777776

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.68  E-value=0.00013  Score=57.04  Aligned_cols=34  Identities=18%  Similarity=0.133  Sum_probs=27.4

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      .+.++.|+||+|+|||+|+.+++....         ....|++
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~---------~~~~~i~   61 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINELN---------LPYIYLD   61 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHT---------CCEEEEE
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHCC---------CCeEEEE
Confidence            457899999999999999999887753         3566666

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.67  E-value=0.00019  Score=56.05  Aligned_cols=73  Identities=16%  Similarity=0.109  Sum_probs=46.6

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHH--------------------HHHHHHHHHH
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQ--------------------SAVINYLDKF  134 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~--------------------~~~l~~l~~~  134 (226)
                      ..+.|+||||+|||+++..++..+.-     .....++|+.........+                    ......+.+.
T Consensus        44 ~~lll~GppGtGKT~l~~~l~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (276)
T d1fnna2          44 PRATLLGRPGTGKTVTLRKLWELYKD-----KTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEH  118 (276)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTT-----SCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHhc-----ccCCcEEEecchhhhhhhhhhhhhHHhhhhhhhhhccchhHHHHHHHHH
Confidence            46889999999999999999988741     2345677776432111111                    1223444455


Q ss_pred             HhhCCCceEEEEcCCchh
Q 036464          135 VSEHKDVKVVIIDSIAFH  152 (226)
Q Consensus       135 l~~~~~~~lvVIDsl~~l  152 (226)
                      +........+++|.+..+
T Consensus       119 ~~~~~~~~~~~~~~~d~~  136 (276)
T d1fnna2         119 LRERDLYMFLVLDDAFNL  136 (276)
T ss_dssp             HHHTTCCEEEEEETGGGS
T ss_pred             HhhcccccccchhHHHHh
Confidence            555556778888887643

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.66  E-value=3.4e-05  Score=60.30  Aligned_cols=62  Identities=19%  Similarity=0.131  Sum_probs=38.1

Q ss_pred             EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHHHHHHHHhhCCCceEEEEcCCchh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVINYLDKFVSEHKDVKVVIIDSIAFH  152 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~~l~~~l~~~~~~~lvVIDsl~~l  152 (226)
                      ++++||||+|||+++..++....         .+...++.........  ....+...   .....+++||++..+
T Consensus        38 ~Ll~GPpG~GKTtla~~la~~~~---------~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~~i~~iDe~~~~   99 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIAHELG---------VNLRVTSGPAIEKPGD--LAAILANS---LEEGDILFIDEIHRL   99 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT---------CCEEEEETTTCCSHHH--HHHHHHTT---CCTTCEEEEETGGGC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC---------CCeEeccCCccccchh--hHHHHHhh---ccCCCeeeeeccccc
Confidence            67999999999999999998864         2345555432122111  11122221   223468999999864

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.65  E-value=0.00014  Score=56.77  Aligned_cols=23  Identities=22%  Similarity=0.218  Sum_probs=21.2

Q ss_pred             EEEecCCCCChHHHHHHHHHHhc
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ++|+||||+|||+++..++.+..
T Consensus        36 lll~Gp~G~GKTt~~~~la~~l~   58 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLESIF   58 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHhhc
Confidence            78999999999999999999864

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.65  E-value=1.7e-05  Score=58.55  Aligned_cols=36  Identities=22%  Similarity=0.255  Sum_probs=28.9

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      .|.++.|.|+|||||||++..++..         .+.+.++++.+
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~---------lg~~~~~~~~d   38 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANL---------PGVPKVHFHSD   38 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTC---------SSSCEEEECTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH---------hCCCEEEecHH
Confidence            4889999999999999999887654         34567778754

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.63  E-value=0.00019  Score=55.32  Aligned_cols=23  Identities=35%  Similarity=0.401  Sum_probs=21.0

Q ss_pred             EEEecCCCCChHHHHHHHHHHhc
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +.|+||||+|||+++..+|..+.
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHhh
Confidence            67999999999999999998864

>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.62  E-value=6.7e-05  Score=46.21  Aligned_cols=47  Identities=23%  Similarity=0.499  Sum_probs=40.2

Q ss_pred             CCCCC-CCHHHHHHHHhCCCccHHHHHhCChhHHhh----chHhHHHHHHHh
Q 036464            3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQEE   49 (226)
Q Consensus         3 ~~~l~-l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----~~~~a~~l~~~~   49 (226)
                      |+++| +++.+.++|.++||.|+.++..+++.+|++    +...|.++++..
T Consensus         1 L~~IpGIG~~~a~~L~~~G~~tv~~l~~a~~eeL~~i~Gi~~~~A~~i~~~a   52 (60)
T d2i1qa1           1 LTDLPGVGPSTAEKLVEAGYIDFMKIATATVGELTDIEGISEKAAAKMIMGA   52 (60)
T ss_dssp             CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHHHHTSTTCCHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHccCCCHHHHHhCCHHHHHHCCCCCHHHHHHHHHHH
Confidence            57888 999999999999999999999999999998    445666665543

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=0.00027  Score=54.15  Aligned_cols=24  Identities=25%  Similarity=0.354  Sum_probs=21.7

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhc
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      -++|+||||+|||+++..++..+.
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHHHhcc
Confidence            389999999999999999998774

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.59  E-value=4.7e-05  Score=56.30  Aligned_cols=35  Identities=26%  Similarity=0.359  Sum_probs=28.1

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      .++.|.|+|||||||++..++..+.      ..+.++..++
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~------~~~~~~~~~~   36 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLR------KEGVNYKMVS   36 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH------TTTCCCEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH------HcCCCeEEEe
Confidence            5899999999999999999988764      3455666554

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.59  E-value=0.00011  Score=59.00  Aligned_cols=113  Identities=14%  Similarity=0.035  Sum_probs=66.6

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhcccc-ccCCCCCeEEEEeccc----cCchHHH-HHHHHHHHHHhhCCCceEEEEc
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPV-EFGGLGGKAIYIGKCL----GFYTEQS-AVINYLDKFVSEHKDVKVVIID  147 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~-~~~~~~~~vlyi~~e~----~~~~~~~-~~l~~l~~~l~~~~~~~lvVID  147 (226)
                      ..-++|+|+||+|||.++..+|..+.... ...-.+..++.+|...    ..+..+. ..+..+-+.+.+. +--+++||
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~~~~~-~~iIlfiD  117 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQD-TNSILFID  117 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSS-SCEEEEET
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhccCccchhHHHHHHHHHHHhhcc-CCceEEec
Confidence            45678999999999999999998876321 0111345666666431    1111111 1233444444444 44688999


Q ss_pred             CCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccc
Q 036464          148 SIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLAT  192 (226)
Q Consensus       148 sl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~  192 (226)
                      ++..++....... +.    ..+...|+.+..+-++.+|.+....
T Consensus       118 eih~l~~~g~~~g-~~----~d~a~~Lkp~L~rg~i~vIgatT~e  157 (268)
T d1r6bx2         118 EIHTIIGAGAASG-GQ----VDAANLIKPLLSSGKIRVIGSTTYQ  157 (268)
T ss_dssp             TTTTTTTSCCSSS-CH----HHHHHHHSSCSSSCCCEEEEEECHH
T ss_pred             chHHHhcCCCCCC-cc----ccHHHHhhHHHhCCCCeEEEeCCHH
Confidence            9999886532211 01    1355667766667788888766543

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=97.55  E-value=0.00044  Score=58.42  Aligned_cols=105  Identities=12%  Similarity=0.040  Sum_probs=65.4

Q ss_pred             HHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-c----------CchHHHHHHHHH
Q 036464           63 LDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-G----------FYTEQSAVINYL  131 (226)
Q Consensus        63 LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-~----------~~~~~~~~l~~l  131 (226)
                      |.+++.   .++.+++|+||+||||||.+..+...+.      ..+.+++-+.--+ +          ...+.......+
T Consensus       150 l~~l~~---~~~GliLvtGpTGSGKSTTl~~~l~~~~------~~~~~i~tiEdPiE~~~~~~~q~~v~~~~~~~~~~~l  220 (401)
T d1p9ra_         150 FRRLIK---RPHGIILVTGPTGSGKSTTLYAGLQELN------SSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGL  220 (401)
T ss_dssp             HHHHHT---SSSEEEEEECSTTSCHHHHHHHHHHHHC------CTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHH
T ss_pred             HHHHHh---hhhceEEEEcCCCCCccHHHHHHhhhhc------CCCceEEEeccCcccccCCCCeeeecCCcCCCHHHHH
Confidence            455553   5678999999999999999999988774      2345666554211 0          001111234556


Q ss_pred             HHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccC
Q 036464          132 DKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTAN  195 (226)
Q Consensus       132 ~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~  195 (226)
                      ...+++  .|++|+|.++....                .+....+ |...|-.|+.|-|.+...
T Consensus       221 ~~~lR~--dPDvi~igEiRd~~----------------ta~~a~~-aa~tGhlV~tTlHa~~a~  265 (401)
T d1p9ra_         221 RAILRQ--DPDVVMVGEIRDLE----------------TAQIAVQ-ASLTGHLVMSTLHTNTAV  265 (401)
T ss_dssp             HHHGGG--CCSEEEESCCCSHH----------------HHHHHHH-HHHTTCEEEEEECCSSSH
T ss_pred             HHHHhh--cCCEEEecCcCChH----------------HHHHHHH-HHhcCCeEEEEeccCchH
Confidence            667765  69999999997321                1112222 335777788777776543

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=5e-05  Score=61.48  Aligned_cols=43  Identities=26%  Similarity=0.165  Sum_probs=38.3

Q ss_pred             ceecCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           55 RITTSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        55 ~i~Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ...+|...+|-++-  +-+|+-..|.|++|+|||+|+.+++.+..
T Consensus        26 ~~~~~~r~ID~l~P--igrGQr~~I~g~~g~GKT~l~~~i~~~~~   68 (289)
T d1xpua3          26 TEDLTARVLDLASP--IGRGQRGLIVAPPKAGKTMLLQNIAQSIA   68 (289)
T ss_dssp             STHHHHHHHHHHSC--CBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             cccccceeeeeccc--ccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence            44567899999986  88999999999999999999999998875

>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=1.7e-05  Score=50.52  Aligned_cols=43  Identities=23%  Similarity=0.339  Sum_probs=37.5

Q ss_pred             CCCHHHHHHHHhCCCccHHHHHhCChhHHhh----chHhHHHHHHHh
Q 036464            7 PISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQEE   49 (226)
Q Consensus         7 ~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----~~~~a~~l~~~~   49 (226)
                      ++++.++++|+++||.|+++++.+++.+|.+    .-.+|..+++..
T Consensus        17 Gig~~~i~kL~~aG~~Tv~~i~~at~~~L~~i~G~~e~~A~KIi~~a   63 (70)
T d1b22a_          17 GINANDVKKLEEAGFHTVEAVAYAPKKELINIKGISEAKADKILAEA   63 (70)
T ss_dssp             TCSHHHHHHHHTTCCSSGGGBTSSBHHHHHTTTTCSTTHHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCcchHHHHHhCCHHHHHHcCCCCHHHHHHHHHHH
Confidence            5999999999999999999999999999998    446777776654

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=97.53  E-value=0.00031  Score=55.58  Aligned_cols=37  Identities=24%  Similarity=0.368  Sum_probs=32.7

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      +.+.|+|.-|+||||++.++|...+      ..|.+|+.||..
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA------~~G~rVllID~D   38 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLH------AMGKTIMVVGCD   38 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHH------TTTCCEEEEEEC
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHH------hCCCcEEEEecC
Confidence            3577899999999999999999998      578999999954

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.53  E-value=3.2e-05  Score=56.87  Aligned_cols=28  Identities=18%  Similarity=0.133  Sum_probs=25.3

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      .+|.++.|+|.|||||||++..++....
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            5789999999999999999999998764

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.52  E-value=3.1e-05  Score=56.98  Aligned_cols=27  Identities=30%  Similarity=0.366  Sum_probs=24.7

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      |++-.+.|+|+||+||||++..++...
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            678889999999999999999999875

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=9.4e-05  Score=53.05  Aligned_cols=102  Identities=14%  Similarity=0.040  Sum_probs=61.5

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc-cCchHHHH-------------HHHHHHHHHhhC
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL-GFYTEQSA-------------VINYLDKFVSEH  138 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~-~~~~~~~~-------------~l~~l~~~l~~~  138 (226)
                      +|.+.+|+||-.+|||+-+++.+..+.      ..+.+|+.|.... ..+.+...             ........+   
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~~------~~g~~v~~ikp~~D~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   71 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRFQ------IAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEA---   71 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHH------TTTCCEEEEEETTCCC--------------CEEESSGGGGHHHH---
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHHH------HcCCcEEEEecccccCCcceeeecCCCcceeeeeechhhhhhhh---
Confidence            589999999999999999999998876      4677888887442 11111100             001111222   


Q ss_pred             CCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCCCC
Q 036464          139 KDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAESC  200 (226)
Q Consensus       139 ~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~~  200 (226)
                      .++++|+||+.+.+ .    +       +.++    .+...+.|+.|++.. +..++.+.++
T Consensus        72 ~~~d~I~IDEaQFf-~----d-------l~~~----~~~~~~~~~~Viv~G-Ld~Df~~~~F  116 (133)
T d1xbta1          72 LGVAVIGIDEGQFF-P----D-------IVEF----CEAMANAGKTVIVAA-LDGTFQRKPF  116 (133)
T ss_dssp             HTCSEEEESSGGGC-T----T-------HHHH----HHHHHHTTCEEEEEC-CSBCTTSSBC
T ss_pred             cccceEEeehhHHH-H----H-------HHHH----HHHHHhcCCcEEEEE-eccccccCcc
Confidence            25799999999954 1    2       1122    233345799987654 4444554443

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.52  E-value=0.00032  Score=53.52  Aligned_cols=101  Identities=12%  Similarity=0.028  Sum_probs=62.9

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC-chHHHHHHHHHHHHHhhC---CCceEEEEcC
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF-YTEQSAVINYLDKFVSEH---KDVKVVIIDS  148 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~-~~~~~~~l~~l~~~l~~~---~~~~lvVIDs  148 (226)
                      .+.-+.++|+||+|||+++..++..+...   ......+++|..+... ..++   +..+.+.+...   .+.+++|||+
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~---~~~h~D~~~i~~~~~~I~Id~---IR~i~~~~~~~~~~~~~KviIId~   87 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVEKF---PPKASDVLEIDPEGENIGIDD---IRTIKDFLNYSPELYTRKYVIVHD   87 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHHTS---CCCTTTEEEECCSSSCBCHHH---HHHHHHHHTSCCSSSSSEEEEETT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHhcc---ccCCCCEEEEeCCcCCCCHHH---HHHHHHHHhhCcccCCCEEEEEeC
Confidence            46689999999999999999999766421   1123468888865322 2233   34455555432   3678999999


Q ss_pred             CchhhhcCcCChHHHHHHHHHHHHHHHHHHHH---cCCEEEEeccccc
Q 036464          149 IAFHFRHGFVDLALRTRVLSGIALKLMNLAKK---FSLALLEPNLATT  193 (226)
Q Consensus       149 l~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~---~~~~vi~~nq~~~  193 (226)
                      ...+-.              ...+.|.+...+   +..-+++||+..+
T Consensus        88 ad~l~~--------------~aqNaLLK~LEEPp~~t~fiLit~~~~~  121 (198)
T d2gnoa2          88 CERMTQ--------------QAANAFLKALEEPPEYAVIVLNTRRWHY  121 (198)
T ss_dssp             GGGBCH--------------HHHHHTHHHHHSCCTTEEEEEEESCGGG
T ss_pred             ccccch--------------hhhhHHHHHHhCCCCCceeeeccCChhh
Confidence            986521              223455666665   3344455555543

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=1.8e-05  Score=59.36  Aligned_cols=30  Identities=27%  Similarity=0.421  Sum_probs=26.3

Q ss_pred             CCCCCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +|. +|.++.|+|+|||||||++..++....
T Consensus        15 ~~~-~g~vI~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          15 GGF-RGCTVWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             CSC-CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             cCC-CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            455 688999999999999999999998774

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.50  E-value=3.1e-05  Score=56.60  Aligned_cols=24  Identities=29%  Similarity=0.452  Sum_probs=22.0

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHh
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .++.|+|+|||||||++..++...
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            578999999999999999999875

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=97.50  E-value=0.00021  Score=51.57  Aligned_cols=104  Identities=14%  Similarity=0.096  Sum_probs=62.5

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-CchHH-------------HHHHHHHHHHHhh--
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-FYTEQ-------------SAVINYLDKFVSE--  137 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-~~~~~-------------~~~l~~l~~~l~~--  137 (226)
                      |.+..|+||-.||||+-+++.+.++.      ..+.+|+.|....- .+.+.             ......+...+..  
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~~------~~~~kv~~ikp~~D~R~~~~i~s~~g~~~~~~~~~~~~~~~~~~~~~~   75 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRLE------YADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNS   75 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHH------HTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHHH------HCCCcEEEEEEcccccccceEEcccCceeeeEEeccchhhHHHHHhhc
Confidence            78999999999999999888887776      35778888764320 00000             0001122222221  


Q ss_pred             -CCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCCC
Q 036464          138 -HKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAES  199 (226)
Q Consensus       138 -~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~  199 (226)
                       ..++++|.||+.+.+ .    +         . ...+.....+.|+.|++.. +..++.+.+
T Consensus        76 ~~~~~dvI~IDE~QFf-~----d---------~-i~~~~~~~~~~g~~Viv~G-Ld~Df~~~~  122 (139)
T d2b8ta1          76 FNDETKVIGIDEVQFF-D----D---------R-ICEVANILAENGFVVIISG-LDKNFKGEP  122 (139)
T ss_dssp             SCTTCCEEEECSGGGS-C----T---------H-HHHHHHHHHHTTCEEEEEC-CSBCTTSSB
T ss_pred             cccCcCEEEechhhhc-c----h---------h-HHHHHHHHHhcCceEEEEE-eccccccCc
Confidence             236899999999953 1    1         1 1234445557899988765 334444443

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.48  E-value=5.7e-05  Score=59.55  Aligned_cols=35  Identities=34%  Similarity=0.497  Sum_probs=27.5

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK  116 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~  116 (226)
                      ....++|+||||+|||+++..+|...-         .+.+.+++
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~~---------~~~~~i~~   65 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEETQ---------GNVIVIDN   65 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTT---------TCCEEECT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhh---------cceEEEec
Confidence            344599999999999999999998763         34666764

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=4.3e-05  Score=56.05  Aligned_cols=27  Identities=22%  Similarity=0.349  Sum_probs=24.5

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ..+.++.|+|+|||||||++..++...
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            457899999999999999999999876

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=97.45  E-value=4.3e-05  Score=64.03  Aligned_cols=39  Identities=26%  Similarity=0.171  Sum_probs=33.2

Q ss_pred             CCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464           69 GGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK  116 (226)
Q Consensus        69 GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~  116 (226)
                      -|.|.+..++++||||+|||++|..+|..+-         ++++.++.
T Consensus       149 ~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---------~~~i~in~  187 (362)
T d1svma_         149 YNIPKKRYWLFKGPIDSGKTTLAAALLELCG---------GKALNVNL  187 (362)
T ss_dssp             HCCTTCCEEEEECSTTSSHHHHHHHHHHHHC---------CEEECCSS
T ss_pred             hCCCCcCeEEEECCCCCCHHHHHHHHHHHcC---------CCEEEEEC
Confidence            3789999999999999999999999998763         46777764

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.43  E-value=0.0001  Score=55.67  Aligned_cols=28  Identities=18%  Similarity=0.183  Sum_probs=24.5

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ..+.++.|.|||||||||.|..++...-
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~~g   33 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQKYG   33 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4567899999999999999999988763

>d1doqa_ a.60.3.1 (A:) C-terminal domain of RNA polymerase alpha subunit {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: SAM domain-like
superfamily: C-terminal domain of RNA polymerase alpha subunit
family: C-terminal domain of RNA polymerase alpha subunit
domain: C-terminal domain of RNA polymerase alpha subunit
species: Thermus thermophilus [TaxId: 274]

Probab=97.42  E-value=6.6e-05  Score=47.53  Aligned_cols=37  Identities=16%  Similarity=0.264  Sum_probs=35.6

Q ss_pred             CCCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhh
Q 036464            1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR   37 (226)
Q Consensus         1 ~~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~   37 (226)
                      |||++|+|+.+..+.|+++|+.|+.|++..+..+|.+
T Consensus         8 ~~I~~L~LS~R~~N~L~~~gI~tv~dL~~~s~~dLl~   44 (69)
T d1doqa_           8 LPLEELGLSTRVLHSLKEEGIESVRALLALNLKDLKN   44 (69)
T ss_dssp             CCHHHHTCCHHHHHHHHHTTCCSHHHHHHSCHHHHTT
T ss_pred             CcHHHcCCCHHHHHHHHHcCCccHHHHHHCCHHHHHh
Confidence            6899999999999999999999999999999999988

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.42  E-value=0.00058  Score=54.58  Aligned_cols=37  Identities=27%  Similarity=0.378  Sum_probs=32.0

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      +.+.|.|.-|+||||++.++|...+      ..|.+|+.||..
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA------~~G~rVLlID~D   39 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALA------EMGKKVMIVGCD   39 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHH------HTTCCEEEEEEC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHH------HCCCCEEEEecC
Confidence            4567899999999999999999887      478899999954

>d1z3eb1 a.60.3.1 (B:245-311) C-terminal domain of RNA polymerase alpha subunit {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: SAM domain-like
superfamily: C-terminal domain of RNA polymerase alpha subunit
family: C-terminal domain of RNA polymerase alpha subunit
domain: C-terminal domain of RNA polymerase alpha subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=97.41  E-value=0.00016  Score=45.39  Aligned_cols=37  Identities=19%  Similarity=0.373  Sum_probs=35.9

Q ss_pred             CCCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhh
Q 036464            1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR   37 (226)
Q Consensus         1 ~~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~   37 (226)
                      +||++|+|+.++.+.|+++|+.|+.|+...+..||.+
T Consensus         7 ~~I~~L~LS~R~~N~Lk~~~I~tv~dL~~~s~~dLl~   43 (67)
T d1z3eb1           7 MTIEELDLSVRSYNCLKRAGINTVQELANKTEEDMMK   43 (67)
T ss_dssp             CBGGGSCCBHHHHHHHHHTTCCBHHHHHTSCHHHHHT
T ss_pred             CCHHHhcCCHHHHHHHHHcCCcCHHHHHHCCHHHHHh
Confidence            6899999999999999999999999999999999988

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.41  E-value=7.9e-05  Score=61.16  Aligned_cols=74  Identities=20%  Similarity=0.116  Sum_probs=49.6

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHH-------------HHHHHHHHHHhhC
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQS-------------AVINYLDKFVSEH  138 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~-------------~~l~~l~~~l~~~  138 (226)
                      .+..+..++||+|+|||.+|..+|..+.      +.+.+.+.++...+...+..             ..-..+.+.+++.
T Consensus        51 kp~~~~lf~Gp~G~GKt~lak~la~~l~------~~~~~~~~~~~~~~~~~~~~~~L~g~~~gyvG~~~~~~l~~~~~~~  124 (315)
T d1qvra3          51 RPIGSFLFLGPTGVGKTELAKTLAATLF------DTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRR  124 (315)
T ss_dssp             SCSEEEEEBSCSSSSHHHHHHHHHHHHH------SSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHC
T ss_pred             CCceEEEEECCCcchHHHHHHHHHHHhc------CCCcceEEEeccccccchhhhhhcCCCCCCcCcccCChHHHHHHhC
Confidence            3455778999999999999999999875      45667888885422111100             0112355666665


Q ss_pred             CCceEEEEcCCchh
Q 036464          139 KDVKVVIIDSIAFH  152 (226)
Q Consensus       139 ~~~~lvVIDsl~~l  152 (226)
                       +..+|++|++...
T Consensus       125 -p~~Vvl~DEieK~  137 (315)
T d1qvra3         125 -PYSVILFDEIEKA  137 (315)
T ss_dssp             -SSEEEEESSGGGS
T ss_pred             -CCcEEEEehHhhc
Confidence             5689999999853

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.40  E-value=0.00044  Score=51.95  Aligned_cols=110  Identities=15%  Similarity=0.189  Sum_probs=58.1

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHH--HH----------------HHHHHHHhh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSA--VI----------------NYLDKFVSE  137 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~--~l----------------~~l~~~l~~  137 (226)
                      ++.|+|...||||.+|-+++.          ...+++||.+-. .+.+.+.  ..                .++...+..
T Consensus         1 iiLVtGGarSGKS~~AE~l~~----------~~~~~~YiAT~~-~~D~em~~RI~~Hr~rR~~~w~tiE~~~~l~~~l~~   69 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIG----------DAPQVLYIATSQ-ILDDEMAARIQHHKDGRPAHWRTAECWRHLDTLITA   69 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHC----------SCSSEEEEECCC-C------CHHHHHHHTSCTTEEEECCSSCGGGTSCT
T ss_pred             CEEEECCCCccHHHHHHHHHh----------cCCCcEEEEccC-CCCHHHHHHHHHHHhcCcCCCEEecccccHHHHHHh
Confidence            579999999999999987642          345799998642 1111110  00                011222221


Q ss_pred             -CCCceEEEEcCCchhhhcCcC-----------ChHHHHHHHHH-HHHHHHHHHHHcCCEEEEeccccccCC
Q 036464          138 -HKDVKVVIIDSIAFHFRHGFV-----------DLALRTRVLSG-IALKLMNLAKKFSLALLEPNLATTANL  196 (226)
Q Consensus       138 -~~~~~lvVIDsl~~l~~~~~~-----------~~~~r~~~l~~-~~~~L~~la~~~~~~vi~~nq~~~~~~  196 (226)
                       ..+.+.|+||+++......+-           ....-...+.+ +...+..+.+...-.||++|.+-..+-
T Consensus        70 ~~~~~~~vLlDclt~~l~N~l~~~~~~~~~~~~~~~~~~~~i~~~i~~l~~~l~~~~~~~ViVsnEVG~GiV  141 (180)
T d1c9ka_          70 DLAPDDAILLECITTMVTNLLFALGGENDPEQWDYAAMERAIDDEIQILIAACQRCPAKVVLVTNEVGMGIV  141 (180)
T ss_dssp             TSCTTCEEEEECHHHHHHHHHHHC----CTTSCCHHHHHHHHHHHHHHHHHHHHHCCSEEEEECCCCCSSCC
T ss_pred             hcCcccchhhhhhhHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHHHHHHHHhCCCcEEEEecccCCCCC
Confidence             235689999999965533210           11111222222 223333344444556778888765443

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.37  E-value=6.8e-05  Score=55.21  Aligned_cols=35  Identities=20%  Similarity=0.103  Sum_probs=29.0

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      .++.|+|.+|||||||+.+++....      ..+.+|..|.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~------~~g~~v~vik   36 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAV------REGWRVGTVK   36 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH------HTTCCEEEEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH------hCCCeEEEEE
Confidence            4788999999999999999998876      4566777664

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.37  E-value=5e-05  Score=55.57  Aligned_cols=23  Identities=43%  Similarity=0.709  Sum_probs=20.7

Q ss_pred             EEEecCCCCChHHHHHHHHHHhc
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +.|+|+|||||||+|..++...-
T Consensus         7 I~i~G~pGsGKTTia~~La~~l~   29 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKSG   29 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            67999999999999999998763

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.36  E-value=6e-05  Score=55.23  Aligned_cols=25  Identities=16%  Similarity=0.167  Sum_probs=22.7

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHh
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ..++.|+|+|||||||++..++...
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc
Confidence            4689999999999999999999875

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=97.36  E-value=0.00093  Score=48.11  Aligned_cols=104  Identities=16%  Similarity=0.102  Sum_probs=62.5

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecccc-CchH-H-------------HHHHHHHHHHHh
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLG-FYTE-Q-------------SAVINYLDKFVS  136 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~-~~~~-~-------------~~~l~~l~~~l~  136 (226)
                      ..|.+.+|+||-.||||+-+++.+.++.      ..+.+|+.|....- .+.+ .             ......+...+.
T Consensus         5 ~~G~l~lI~GpMfSGKTteLi~~~~~~~------~~g~~vl~i~~~~D~Ry~~~~i~sh~g~~~~a~~~~~~~~~~~~~~   78 (141)
T d1xx6a1           5 DHGWVEVIVGPMYSGKSEELIRRIRRAK------IAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFE   78 (141)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCC
T ss_pred             cceeEEEEEeccccHHHHHHHHHHHHhh------hcCCcEEEEEeccccccccceeeecccceEEEEEecchhhhhhhhc
Confidence            3699999999999999999999998876      35678888763320 0000 0             000112222222


Q ss_pred             hCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccccccCCCCC
Q 036464          137 EHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTANLAES  199 (226)
Q Consensus       137 ~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~  199 (226)
                        .++++|.||+.+.+ .    +         .....+..++ +.|..|++.. +..++.+.+
T Consensus        79 --~~~dvI~IDE~QFf-~----d---------~~~~~~~~l~-~~g~~Viv~G-Ld~Df~~~~  123 (141)
T d1xx6a1          79 --EDTEVIAIDEVQFF-D----D---------EIVEIVNKIA-ESGRRVICAG-LDMDFRGKP  123 (141)
T ss_dssp             --TTCSEEEECSGGGS-C----T---------HHHHHHHHHH-HTTCEEEEEE-CSBCTTSCB
T ss_pred             --ccccEEEEeehhhc-c----c---------cHHHHHHhhe-eCCcEEEEEE-eccccccCc
Confidence              36899999999953 2    1         1223445554 4688877654 444444443

>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: DNA repair protein Rad51, N-terminal domain
domain: DNA repair protein Rad51, N-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.36  E-value=0.00028  Score=43.39  Aligned_cols=47  Identities=30%  Similarity=0.509  Sum_probs=40.6

Q ss_pred             CCCCC-CCHHHHHHHHhCCCccHHHHHhCChhHHhh----chHhHHHHHHHh
Q 036464            3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQEE   49 (226)
Q Consensus         3 ~~~l~-l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----~~~~a~~l~~~~   49 (226)
                      |.++| +++.+..+|.++||.|+.++..+++.+|.+    +-.+|.++++..
T Consensus         3 L~~i~GIG~~~a~~L~~~g~~sv~~l~~a~~~eL~~i~Gi~~~~A~~i~~~a   54 (61)
T d1pzna1           3 IEDLPGVGPATAEKLREAGYDTLEAIAVASPIELKEVAGISEGTALKIIQAA   54 (61)
T ss_dssp             SSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             cccCCCCCHHHHHHHHHhcCCCHHHHHhCCHHHHHHCCCCCHHHHHHHHHHH
Confidence            67888 999999999999999999999999999998    446666666554

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.36  E-value=4.9e-05  Score=56.00  Aligned_cols=25  Identities=28%  Similarity=0.222  Sum_probs=22.3

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhc
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ..+.|.|+||+||||||..++...-
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999998763

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.35  E-value=0.00055  Score=57.55  Aligned_cols=112  Identities=16%  Similarity=0.113  Sum_probs=53.9

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccc-cCCCCCeEEEEeccc----cCchHHH-HHHHHHHHHHhhCCCceEEEEc
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVE-FGGLGGKAIYIGKCL----GFYTEQS-AVINYLDKFVSEHKDVKVVIID  147 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~-~~~~~~~vlyi~~e~----~~~~~~~-~~l~~l~~~l~~~~~~~lvVID  147 (226)
                      ..-.+|+|+||+|||.++..+|..+.-..- ..-.+..++.+|...    ..+..+. .-+..+-..+....+.-+++||
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~~~~~ilfid  122 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFID  122 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEEC
T ss_pred             CCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhcccCcchhHHHHHHHHHHHhccCCCceEEEec
Confidence            444788899999999999988887653210 011345677777442    1111111 1223333333333345679999


Q ss_pred             CCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEeccc
Q 036464          148 SIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLA  191 (226)
Q Consensus       148 sl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~  191 (226)
                      ++..++......  +    -......|+-...+-.+.+|.+...
T Consensus       123 e~h~l~~~g~~~--g----~~d~a~~Lkp~L~rg~~~~I~~tT~  160 (387)
T d1qvra2         123 ELHTVVGAGKAE--G----AVDAGNMLKPALARGELRLIGATTL  160 (387)
T ss_dssp             CC-------------------------HHHHHTTCCCEEEEECH
T ss_pred             cHHHHhcCCCCC--C----cccHHHHHHHHHhCCCcceeeecCH
Confidence            999988542111  1    1245667787777777888866543

>d1lb2b_ a.60.3.1 (B:) C-terminal domain of RNA polymerase alpha subunit {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: SAM domain-like
superfamily: C-terminal domain of RNA polymerase alpha subunit
family: C-terminal domain of RNA polymerase alpha subunit
domain: C-terminal domain of RNA polymerase alpha subunit
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=0.00027  Score=44.92  Aligned_cols=37  Identities=8%  Similarity=0.187  Sum_probs=35.6

Q ss_pred             CCCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhh
Q 036464            1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISR   37 (226)
Q Consensus         1 ~~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~   37 (226)
                      .||++|+|+.++.+.|+++|+.|+.|++..+..||.+
T Consensus         6 k~I~~L~lS~R~~N~L~~~gI~tvgdL~~~s~~dLl~   42 (72)
T d1lb2b_           6 RPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLK   42 (72)
T ss_dssp             SBGGGGCCCHHHHHHHHHTTCCBHHHHHTCCHHHHHH
T ss_pred             CcHHHhCCCHHHHHHHhHcCCcCHHHHHhCCHHHHHh
Confidence            4899999999999999999999999999999999998

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=8.3e-05  Score=53.51  Aligned_cols=24  Identities=33%  Similarity=0.419  Sum_probs=21.1

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhc
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      .+.|+|+||+||||++..+|...-
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            577889999999999999998863

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.24  E-value=0.0001  Score=55.34  Aligned_cols=28  Identities=29%  Similarity=0.224  Sum_probs=24.0

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      |+|--+.|.|||||||||.|..+|...-
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~g   28 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNFC   28 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5666778899999999999999998763

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=97.22  E-value=0.0015  Score=46.00  Aligned_cols=36  Identities=17%  Similarity=0.149  Sum_probs=27.2

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK  116 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~  116 (226)
                      ...+...|.+|+|+|||.++..++.         ..+.+++|+..
T Consensus         6 ~~~~~~ll~apTGsGKT~~~~~~~~---------~~~~~vli~~P   41 (136)
T d1a1va1           6 QSFQVAHLHAPTGSGKSTKVPAAYA---------AQGYKVLVLNP   41 (136)
T ss_dssp             SSCEEEEEECCTTSCTTTHHHHHHH---------TTTCCEEEEES
T ss_pred             cCCCEEEEEeCCCCCHHHHHHHHHH---------HcCCcEEEEcC
Confidence            3467789999999999988765543         35678888873

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.21  E-value=0.00012  Score=55.17  Aligned_cols=26  Identities=23%  Similarity=0.272  Sum_probs=23.0

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ..++.|.|||||||||+|..++...-
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~~~g   31 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            35899999999999999999998763

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=0.00016  Score=54.49  Aligned_cols=34  Identities=21%  Similarity=0.190  Sum_probs=28.2

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK  116 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~  116 (226)
                      +.-.++.|.|||||||||+|..++..+-           ..||++
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~g-----------~~~is~   39 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDYS-----------FVHLSA   39 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSS-----------CEEEEH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhC-----------CeEEeh
Confidence            4456899999999999999999988763           577874

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.15  E-value=0.00032  Score=53.92  Aligned_cols=41  Identities=15%  Similarity=0.093  Sum_probs=32.8

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      .+|.++-|+|.||+||||++..++.....     ..+..++++|+.
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~-----~~~~~~~~ldgD   62 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVR-----DRRVHAYRLDGD   62 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHH-----HHCCCEEEECHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHH-----hcCceEEEEcch
Confidence            67899999999999999999999876531     124578888865

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.15  E-value=0.00016  Score=53.90  Aligned_cols=34  Identities=29%  Similarity=0.323  Sum_probs=26.0

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      ++.|+|++||||||+|..++....      ..+..+..++
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~------~~~~~~~~~~   57 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLR------EQGISVCVFH   57 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH------HTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc------cccccceecc
Confidence            677999999999999999987654      2344555555

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.15  E-value=0.0024  Score=48.55  Aligned_cols=76  Identities=17%  Similarity=0.136  Sum_probs=49.0

Q ss_pred             CCCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEe
Q 036464            1 MEVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIG   80 (226)
Q Consensus         1 ~~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~   80 (226)
                      |..++|+|++.+++.|.+.||.+...+-        +   .+                    +..++.|    +.-+.+.
T Consensus         4 msf~~l~l~~~l~~~l~~~g~~~pt~iQ--------~---~~--------------------ip~~l~g----~~d~iv~   48 (208)
T d1hv8a1           4 MNFNELNLSDNILNAIRNKGFEKPTDIQ--------M---KV--------------------IPLFLND----EYNIVAQ   48 (208)
T ss_dssp             CCGGGSSCCHHHHHHHHHHTCCSCCHHH--------H---HH--------------------HHHHHHT----CSEEEEE
T ss_pred             cCHHHcCCCHHHHHHHHHCCCCCCCHHH--------H---HH--------------------HHHHHcC----CCCeeee
Confidence            5678899999999999999998643321        1   11                    1223322    2246788


Q ss_pred             cCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           81 GVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        81 G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      +++|+|||....-.+.....    .+.+-.++++.
T Consensus        49 a~TGsGKT~~~~l~~~~~~~----~~~~~~~lil~   79 (208)
T d1hv8a1          49 ARTGSGKTASFAIPLIELVN----ENNGIEAIILT   79 (208)
T ss_dssp             CCSSSSHHHHHHHHHHHHSC----SSSSCCEEEEC
T ss_pred             chhcccccceeecccccccc----cccCcceEEEe
Confidence            99999999876555544331    13455677776

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=97.14  E-value=0.0013  Score=52.28  Aligned_cols=39  Identities=18%  Similarity=0.221  Sum_probs=28.9

Q ss_pred             CCCCeeEEEecCCCCChHH-HHHHHHHHhccccccCCCCCeEEEEe
Q 036464           71 IGCREVTEIGGVPGIGKTQ-LGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~-l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      +.+|+.+++.+|+|+|||. ++..++....      ..+.+++|+.
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~------~~~~~~lvi~   45 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAI------KRGLRTLILA   45 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHHHHH------HHTCCEEEEE
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHHHHH------hcCCEEEEEc
Confidence            5789999999999999995 4444444443      2456789886

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.10  E-value=0.0019  Score=47.22  Aligned_cols=101  Identities=14%  Similarity=0.145  Sum_probs=65.0

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc--------------------------cCchH---
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL--------------------------GFYTE---  123 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~--------------------------~~~~~---  123 (226)
                      +|-+.+.+|+ |-||||-|+-.|..++      +.|.+|+++..--                          +...+   
T Consensus         2 kG~i~vytG~-GKGKTTAAlG~alRA~------G~G~rV~ivQFlKg~~~~ge~~~~~~~~~~~~~~~~~~~~~~~~~e~   74 (157)
T d1g5ta_           2 RGIIIVFTGN-GKGKTTAAFGTAARAV------GHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREA   74 (157)
T ss_dssp             CCCEEEEESS-SSCHHHHHHHHHHHHH------HTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHH
T ss_pred             CcEEEEEeCC-CCCcHHHHHHHHHHHh------cCCCEEEEEEEecCCcccchhhhhcccCcEEEEecCCCcccCCChHH
Confidence            5666677775 8999999999999888      7899999998310                          11111   


Q ss_pred             HH----HHHHHHHHHHhhCCCceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecc
Q 036464          124 QS----AVINYLDKFVSEHKDVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNL  190 (226)
Q Consensus       124 ~~----~~l~~l~~~l~~~~~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq  190 (226)
                      ..    ..++...+.+.+ ..+++||+|++.....-.+-+.       .+++..|++  +-.+.-||+|-+
T Consensus        75 ~~~~a~~~~~~a~~~~~~-~~~dllILDEi~~Ai~~gli~~-------~~v~~ll~~--rp~~~evVlTGr  135 (157)
T d1g5ta_          75 DTAACMAVWQHGKRMLAD-PLLDMVVLDELTYMVAYDYLPL-------EEVISALNA--RPGHQTVIITGR  135 (157)
T ss_dssp             HHHHHHHHHHHHHHHTTC-TTCSEEEEETHHHHHHTTSSCH-------HHHHHHHHT--SCTTCEEEEECS
T ss_pred             HHHHHHHHHHHHHHHhhc-CccCEEeHHHHHHHHHcCCCCH-------HHHHHHHHh--CCCCCEEEEECC
Confidence            11    123333444443 4799999999997665544331       244445543  346788888865

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.09  E-value=0.00028  Score=52.12  Aligned_cols=35  Identities=20%  Similarity=0.395  Sum_probs=28.3

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      .++.|.|+||+||||++..++....      ..+..+..++
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~------~~~~~~~~~~   36 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILD------NQGINNKIIN   36 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH------TTTCCEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH------HcCCCEEEEE
Confidence            4789999999999999999987764      3556666665

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.09  E-value=0.00017  Score=54.93  Aligned_cols=24  Identities=38%  Similarity=0.469  Sum_probs=22.6

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhc
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ++.|.|||||||||.|..++.++-
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            889999999999999999999985

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.08  E-value=0.0005  Score=52.72  Aligned_cols=36  Identities=28%  Similarity=0.398  Sum_probs=30.4

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      |....+..|+||||++.++|...+      ..+.+|++||..
T Consensus         4 Iav~s~KGGvGKTtia~nlA~~la------~~g~~VlliD~D   39 (232)
T d1hyqa_           4 ITVASGKGGTGKTTITANLGVALA------QLGHDVTIVDAD   39 (232)
T ss_dssp             EEEEESSSCSCHHHHHHHHHHHHH------HTTCCEEEEECC
T ss_pred             EEEECCCCCChHHHHHHHHHHHHH------hCCCCEEEEeCC
Confidence            345558999999999999999987      578899999954

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.05  E-value=0.00019  Score=53.57  Aligned_cols=25  Identities=20%  Similarity=0.306  Sum_probs=22.8

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHh
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      |.++.|+||+|+||||++..++...
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            8899999999999999999887764

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.03  E-value=0.0012  Score=52.77  Aligned_cols=43  Identities=14%  Similarity=0.051  Sum_probs=30.7

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK  116 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~  116 (226)
                      ....++.|+|.+|+||||||.+++.....-  ....-..++|++.
T Consensus        42 ~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~--~~~~f~~~~Wv~v   84 (277)
T d2a5yb3          42 LDSFFLFLHGRAGSGKSVIASQALSKSDQL--IGINYDSIVWLKD   84 (277)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHCSST--BTTTBSEEEEEEC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhhhhh--hhhcCceEEEEEe
Confidence            456799999999999999999998764310  0122356788863

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.02  E-value=0.00052  Score=53.29  Aligned_cols=42  Identities=24%  Similarity=0.346  Sum_probs=32.4

Q ss_pred             HHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           63 LDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        63 LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      ++.++.     |+-+.+.+|+|+|||..+...+....      ..+.+++|+.
T Consensus        52 i~~~l~-----g~~~~i~apTGsGKT~~~~~~~~~~~------~~~~rvliv~   93 (237)
T d1gkub1          52 AKRILR-----KESFAATAPTGVGKTSFGLAMSLFLA------LKGKRCYVIF   93 (237)
T ss_dssp             HHHHHT-----TCCEECCCCBTSCSHHHHHHHHHHHH------TTSCCEEEEE
T ss_pred             HHHHHC-----CCCEEEEecCCChHHHHHHHHHHHHH------HhcCeEEEEe
Confidence            566664     56788999999999988776666555      3567899998

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.97  E-value=0.00027  Score=54.07  Aligned_cols=24  Identities=21%  Similarity=0.281  Sum_probs=21.6

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhc
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ++.|.|||||||||.|..++.++-
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            467889999999999999999985

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.00039  Score=55.10  Aligned_cols=39  Identities=21%  Similarity=0.269  Sum_probs=34.5

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      ...++.++|.-|+||||++.++|...+      ..|.+|+.||..
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nLA~~lA------~~G~rVllvD~D   57 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAIAVRLA------DMGFDVHLTTSD   57 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEESC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH------HCCCcEEEEeCC
Confidence            367889999999999999999999988      478899999965

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00025  Score=53.25  Aligned_cols=24  Identities=25%  Similarity=0.285  Sum_probs=21.6

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhc
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ++.|.|||||||||.|..++...-
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~g   26 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKYG   26 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            678999999999999999998763

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.95  E-value=0.00024  Score=52.58  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=20.6

Q ss_pred             EEEecCCCCChHHHHHHHHHHhc
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +.|.|+|||||||+|..++...-
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~~   25 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAYG   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            67999999999999999988863

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.94  E-value=0.00015  Score=59.68  Aligned_cols=71  Identities=15%  Similarity=0.154  Sum_probs=45.4

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc--c----------CchHHHHHHHHHHHHHhhC
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL--G----------FYTEQSAVINYLDKFVSEH  138 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~--~----------~~~~~~~~l~~l~~~l~~~  138 (226)
                      +..+..++|+|++||||||++..++..+       ..+.+++.|....  .          .........+.+...+.  
T Consensus       163 v~~~~nili~G~tgSGKTT~l~al~~~i-------~~~~rivtiEd~~El~l~~~~~~~~~~~~~~~~~~~ll~~~lR--  233 (323)
T d1g6oa_         163 IAIGKNVIVCGGTGSGKTTYIKSIMEFI-------PKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLR--  233 (323)
T ss_dssp             HHHTCCEEEEESTTSSHHHHHHHHGGGS-------CTTCCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTT--
T ss_pred             HHhCCCEEEEeeccccchHHHHHHhhhc-------ccccceeeccchhhhhcccccccceeccccchhHHHHHHHHhc--
Confidence            3445668999999999999998777554       2456777775321  0          00011112334455554  


Q ss_pred             CCceEEEEcCCc
Q 036464          139 KDVKVVIIDSIA  150 (226)
Q Consensus       139 ~~~~lvVIDsl~  150 (226)
                      .+|+.||+.++.
T Consensus       234 ~~pd~iivgEiR  245 (323)
T d1g6oa_         234 MRPDRIILGELR  245 (323)
T ss_dssp             SCCSEEEESCCC
T ss_pred             cCCCcccCCccC
Confidence            379999999996

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.92  E-value=0.00035  Score=52.96  Aligned_cols=44  Identities=23%  Similarity=0.322  Sum_probs=29.1

Q ss_pred             hhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           61 ADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        61 ~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      ..++.++.|     .-+.+++|+|+|||..+.-.+....      ..+++++|+.
T Consensus        32 ~ai~~l~~~-----~~~il~apTGsGKT~~a~l~i~~~~------~~~~~vl~l~   75 (202)
T d2p6ra3          32 EAVEKVFSG-----KNLLLAMPTAAGKTLLAEMAMVREA------IKGGKSLYVV   75 (202)
T ss_dssp             HHHHHHTTC-----SCEEEECSSHHHHHHHHHHHHHHHH------HTTCCEEEEE
T ss_pred             HHHHHHHcC-----CCEEEEcCCCCchhHHHHHHHHHHh------hccCcceeec
Confidence            345556543     3478999999999987644333332      2456888887

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.87  E-value=0.00058  Score=51.42  Aligned_cols=23  Identities=26%  Similarity=0.462  Sum_probs=20.4

Q ss_pred             eEEEecCCCCChHHHHHHHHHHh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+.|.|+|||||||+|..+|..+
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            46677999999999999999876

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.86  E-value=0.0003  Score=52.22  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=20.6

Q ss_pred             EEEecCCCCChHHHHHHHHHHhc
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +.|.|||||||||+|..++...-
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~g   25 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKLG   25 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            67889999999999999998863

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.85  E-value=0.0003  Score=52.66  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=20.6

Q ss_pred             EEEecCCCCChHHHHHHHHHHhc
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +.|.|||||||||+|..++..+-
T Consensus         6 I~i~GppGsGKsT~a~~La~~~~   28 (189)
T d1zaka1           6 VMISGAPASGKGTQCELIKTKYQ   28 (189)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            67999999999999999888874

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.0005  Score=52.70  Aligned_cols=38  Identities=18%  Similarity=0.211  Sum_probs=31.9

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      ++|.++.|.|+.|+||||++..++....      ..+.+|+++.
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~------~~g~~v~~~~   38 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALC------AAGHRAELLR   38 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH------HTTCCEEEEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHH------HCCCcEEEEe
Confidence            4688999999999999999999888765      4567788775

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.00079  Score=55.98  Aligned_cols=40  Identities=25%  Similarity=0.284  Sum_probs=27.0

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      +.++.|.|+||+|||++...+...+..  .....+.+++...
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~~l~~--~~~~~~~~I~l~A  202 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLAALIQ--MADGERCRIRLAA  202 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHHHH--TCSSCCCCEEEEB
T ss_pred             CCeEEEEcCCCCCceehHHHHHHHHHH--HHhccCCeEEEec
Confidence            679999999999999998776544321  0112445666655

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.82  E-value=0.00035  Score=51.97  Aligned_cols=24  Identities=21%  Similarity=0.299  Sum_probs=21.2

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhc
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      .+.|.|+|||||||+|..++...-
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g   25 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYG   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            367899999999999999998874

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.80  E-value=0.0006  Score=52.46  Aligned_cols=23  Identities=30%  Similarity=0.366  Sum_probs=21.0

Q ss_pred             EEEecCCCCChHHHHHHHHHHhc
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +.|+||||+|||+++..++..+.
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l~   58 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKELY   58 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHHc
Confidence            78999999999999999998863

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.78  E-value=0.00073  Score=51.97  Aligned_cols=33  Identities=24%  Similarity=0.323  Sum_probs=25.9

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      ++.|.|++|+|||||+..+..+..       .++++..|+
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~-------~~~~~~ivn   34 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE-------DNYKVAYVN   34 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT-------TTSCEEEEE
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh-------hCCeEEEEe
Confidence            689999999999999999987653       344555554

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.72  E-value=0.012  Score=43.57  Aligned_cols=20  Identities=20%  Similarity=0.311  Sum_probs=18.4

Q ss_pred             EEEecCCCCChHHHHHHHHH
Q 036464           77 TEIGGVPGIGKTQLGIQLAV   96 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~   96 (226)
                      +.|.|+||+|||||...+..
T Consensus        26 I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          26 IALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             EEEEEBTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHhcC
Confidence            89999999999999998863

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.00045  Score=51.13  Aligned_cols=23  Identities=17%  Similarity=0.108  Sum_probs=20.3

Q ss_pred             EEEecCCCCChHHHHHHHHHHhc
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +.|.|||||||||.|..++...-
T Consensus         3 I~i~G~pGSGKsT~~~~La~~~~   25 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEKYG   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            56899999999999999988763

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00051  Score=52.29  Aligned_cols=24  Identities=13%  Similarity=0.241  Sum_probs=21.5

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhc
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ++.|+|++||||||++..++..+.
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            688999999999999999988764

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.69  E-value=0.0024  Score=52.17  Aligned_cols=27  Identities=30%  Similarity=0.319  Sum_probs=23.6

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ....+.|+|+||+|||||.-+++....
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~~~   76 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSLLT   76 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHHHh
Confidence            456799999999999999999997764

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.0033  Score=51.05  Aligned_cols=69  Identities=20%  Similarity=0.203  Sum_probs=44.0

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccC--------------chHHHHHHHHHHHHHhhC
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGF--------------YTEQSAVINYLDKFVSEH  138 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~--------------~~~~~~~l~~l~~~l~~~  138 (226)
                      +...+.++||||+|||.|+..+|...-         .+.+.+|...+.              +... ..-..+...+...
T Consensus        51 p~~~~lf~Gp~GvGKT~lak~la~~l~---------~~~i~~d~s~~~~~~~~~~l~g~~~gy~g~-~~~~~l~~~~~~~  120 (315)
T d1r6bx3          51 PVGSFLFAGPTGVGKTEVTVQLSKALG---------IELLRFDMSEYMERHTVSRLIGAPPGYVGF-DQGGLLTDAVIKH  120 (315)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHT---------CEEEEEEGGGCSSSSCCSSSCCCCSCSHHH-HHTTHHHHHHHHC
T ss_pred             CceEEEEECCCcchhHHHHHHHHhhcc---------CCeeEeccccccchhhhhhhcccCCCcccc-ccCChhhHHHHhC
Confidence            445678999999999999999998753         356667743211              1110 0112233445454


Q ss_pred             CCceEEEEcCCchh
Q 036464          139 KDVKVVIIDSIAFH  152 (226)
Q Consensus       139 ~~~~lvVIDsl~~l  152 (226)
                       +..++++|++...
T Consensus       121 -~~~vvl~DeieKa  133 (315)
T d1r6bx3         121 -PHAVLLLDEIEKA  133 (315)
T ss_dssp             -SSEEEEEETGGGS
T ss_pred             -ccchhhhcccccc
Confidence             6789999999853

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.66  E-value=0.00053  Score=50.93  Aligned_cols=22  Identities=27%  Similarity=0.335  Sum_probs=19.6

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.|.|||||||||+|..++...
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5577999999999999999876

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=96.64  E-value=0.00078  Score=53.50  Aligned_cols=37  Identities=19%  Similarity=0.323  Sum_probs=32.9

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      .++.++|.-|+||||++..+|...+      ..|.+|+.||..
T Consensus         9 ~~i~~sGKGGVGKTTvaa~lA~~lA------~~G~rVLlvD~D   45 (296)
T d1ihua1           9 PYLFFTGKGGVGKTSISCATAIRLA------EQGKRVLLVSTD   45 (296)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEECC
T ss_pred             eEEEEECCCcChHHHHHHHHHHHHH------HCCCCEEEEeCC
Confidence            3678899999999999999999998      578999999955

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.00065  Score=51.99  Aligned_cols=26  Identities=19%  Similarity=0.144  Sum_probs=23.4

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .|.++.|+||+|+|||+|...++...
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence            48899999999999999999988764

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.63  E-value=0.00092  Score=51.20  Aligned_cols=38  Identities=26%  Similarity=0.355  Sum_probs=32.1

Q ss_pred             CeeEEEe-cCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           74 REVTEIG-GVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        74 G~i~~i~-G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      |+++.++ +..|+||||++.++|...+      ..+.+|++||..
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la------~~g~~VlliD~D   40 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALG------DRGRKVLAVDGD   40 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHH------HTTCCEEEEECC
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHH------hCCCCEEEEeCC
Confidence            5666666 7799999999999999987      578899999954

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.60  E-value=0.0037  Score=48.09  Aligned_cols=32  Identities=34%  Similarity=0.303  Sum_probs=25.0

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      +++|+|.-|+|||||..+++.+.        .+.++..|-
T Consensus         5 v~iitGFLGaGKTTll~~lL~~~--------~~~riaVI~   36 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNEQ--------HGYKIAVIE   36 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC--------CCCCEEEEC
T ss_pred             EEEEeeCCCCCHHHHHHHHHhcC--------CCCcEEEEE
Confidence            78999999999999999887752        344565554

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.57  E-value=0.00069  Score=49.77  Aligned_cols=24  Identities=29%  Similarity=0.342  Sum_probs=20.7

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhc
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      .+.|.|+||+||||++..+|...-
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg   27 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALG   27 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            356789999999999999998874

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.55  E-value=0.00073  Score=49.35  Aligned_cols=23  Identities=30%  Similarity=0.377  Sum_probs=20.5

Q ss_pred             EEEecCCCCChHHHHHHHHHHhc
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +.|+|+||+||||++..+|...-
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~   25 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLD   25 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            56779999999999999998874

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.54  E-value=0.00081  Score=49.13  Aligned_cols=23  Identities=35%  Similarity=0.638  Sum_probs=19.7

Q ss_pred             EEEecCCCCChHHHHHHHHHHhc
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +.|.|+||+||||++..++...-
T Consensus         4 IvliG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            45669999999999999998874

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.51  E-value=0.0019  Score=49.04  Aligned_cols=22  Identities=9%  Similarity=0.143  Sum_probs=19.4

Q ss_pred             CCCCCCCHHHHHHHHhCCCccH
Q 036464            3 VSKLPISATQRGKLISAGYTSL   24 (226)
Q Consensus         3 ~~~l~l~~~~~~~l~~~g~~t~   24 (226)
                      .++|+|++.+++.|.+.||.+.
T Consensus         3 F~~l~L~~~l~~~L~~~g~~~p   24 (206)
T d1s2ma1           3 FEDFYLKRELLMGIFEAGFEKP   24 (206)
T ss_dssp             GGGGCCCHHHHHHHHHTTCCSC
T ss_pred             hHHcCCCHHHHHHHHHCCCCCC
Confidence            3578999999999999999973

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.44  E-value=0.012  Score=42.65  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=19.2

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++.|++|+|||+|+.+++.+-
T Consensus         7 ivlvG~~~vGKTsli~~~~~~~   28 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            5789999999999999988654

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.42  E-value=0.0055  Score=46.93  Aligned_cols=74  Identities=14%  Similarity=0.038  Sum_probs=44.6

Q ss_pred             CCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEecC
Q 036464            3 VSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV   82 (226)
Q Consensus         3 ~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~   82 (226)
                      .++|+|++.+++.|.+.||+...        .+++   .|+                    -.++.     |.-+.+.++
T Consensus        14 F~~l~L~~~l~~~L~~~g~~~pt--------~iQ~---~ai--------------------p~il~-----g~dvl~~a~   57 (218)
T d2g9na1          14 FDDMNLSESLLRGIYAYGFEKPS--------AIQQ---RAI--------------------LPCIK-----GYDVIAQAQ   57 (218)
T ss_dssp             GGGSCCCHHHHHHHHHHTCCSCC--------HHHH---HHH--------------------HHHHH-----TCCEEEECC
T ss_pred             HHHCCCCHHHHHHHHHCCCCCCC--------HHHH---HHH--------------------HHHHc-----CCCEEEEcc
Confidence            46788999999999999998632        2221   111                    11232     345889999


Q ss_pred             CCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        83 ~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      +|+|||.-..--+.+....   ...+-.++++.
T Consensus        58 TGsGKTlayllp~l~~i~~---~~~~~~alil~   87 (218)
T d2g9na1          58 SGTGKTATFAISILQQIEL---DLKATQALVLA   87 (218)
T ss_dssp             TTSSHHHHHHHHHHHHCCT---TCCSCCEEEEC
T ss_pred             cchhhhhhhhhhhhheecc---cccCccEEEEc
Confidence            9999997654333333221   12334566665

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.0073  Score=46.87  Aligned_cols=39  Identities=15%  Similarity=0.092  Sum_probs=33.4

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      .-...+|+|..|||||.+++..+..+.      ..|..|+++-.+
T Consensus        75 ~~~~~LL~GdvGsGKT~V~~~a~~~~~------~~g~qv~~l~Pt  113 (233)
T d2eyqa3          75 LAMDRLVCGDVGFGKTEVAMRAAFLAV------DNHKQVAVLVPT  113 (233)
T ss_dssp             SCCEEEEECCCCTTTHHHHHHHHHHHH------TTTCEEEEECSS
T ss_pred             CccCeEEEcCCCCCcHHHHHHHHHHHH------HcCCceEEEccH
Confidence            345789999999999999999998887      578899998755

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.39  E-value=0.0066  Score=46.24  Aligned_cols=54  Identities=15%  Similarity=0.142  Sum_probs=38.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEecC
Q 036464            3 VSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV   82 (226)
Q Consensus         3 ~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~   82 (226)
                      .++|+|++.++++|++.||+....+-...                               +..++.     |.-+.+.++
T Consensus        12 F~~l~l~~~l~~~L~~~g~~~pt~iQ~~a-------------------------------ip~il~-----g~dvl~~a~   55 (212)
T d1qdea_          12 FDDMELDENLLRGVFGYGFEEPSAIQQRA-------------------------------IMPIIE-----GHDVLAQAQ   55 (212)
T ss_dssp             GGGGTCCHHHHHHHHHHTCCSCCHHHHHH-------------------------------HHHHHT-----TCCEEEECC
T ss_pred             hhhCCCCHHHHHHHHHCCCCCCCHHHHHH-------------------------------HHHHHc-----CCCEEeecc
Confidence            35788999999999999999754433221                               222333     566899999


Q ss_pred             CCCChHHHHH
Q 036464           83 PGIGKTQLGI   92 (226)
Q Consensus        83 ~GsGKT~l~~   92 (226)
                      +|+|||.-..
T Consensus        56 TGsGKT~a~~   65 (212)
T d1qdea_          56 SGTGKTGTFS   65 (212)
T ss_dssp             TTSSHHHHHH
T ss_pred             cccchhhhhH
Confidence            9999997543

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.39  E-value=0.0012  Score=50.07  Aligned_cols=27  Identities=22%  Similarity=0.272  Sum_probs=24.0

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +|.++.|.|+.||||||++..++....
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999887664

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0099  Score=43.09  Aligned_cols=22  Identities=32%  Similarity=0.428  Sum_probs=19.7

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ++|.|++|+|||+|+.+++..-
T Consensus         8 i~lvG~~~vGKTsLi~r~~~~~   29 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQSY   29 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            7889999999999999998754

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=96.35  E-value=0.0014  Score=49.43  Aligned_cols=35  Identities=17%  Similarity=0.121  Sum_probs=30.8

Q ss_pred             eEEEecC-CCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464           76 VTEIGGV-PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK  116 (226)
Q Consensus        76 i~~i~G~-~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~  116 (226)
                      .+-|+|- +|+|||+++..+|...+      ..|.+|++|+.
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~aLa------~~G~rVl~id~   38 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQAAK------AAGYRTAGYKP   38 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHH------HTTCCEEEECS
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHH------HCCCeEEEECc
Confidence            4678898 59999999999999998      58899999983

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.34  E-value=0.014  Score=43.38  Aligned_cols=24  Identities=29%  Similarity=0.246  Sum_probs=20.6

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhc
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      .+.|+|+|++|||+|.-.+...-.
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~~~   28 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTDSV   28 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC
Confidence            578999999999999999986543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.002  Score=52.80  Aligned_cols=27  Identities=19%  Similarity=0.250  Sum_probs=23.7

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ....+.|+|+||+|||||.-.++....
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~~~   79 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGMLLI   79 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            466799999999999999999987765

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.23  E-value=0.0053  Score=50.86  Aligned_cols=73  Identities=21%  Similarity=0.131  Sum_probs=41.9

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHH--HHHHHHHH-------HhhCCC
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSA--VINYLDKF-------VSEHKD  140 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~--~l~~l~~~-------l~~~~~  140 (226)
                      ..|++. +++.||+|+|||.+|..+|...-         .+.+.+|...+.-.....  .-..+.++       +... +
T Consensus        65 ~~p~~n-iLfiGPTGvGKTElAk~LA~~~~---------~~~ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~-~  133 (364)
T d1um8a_          65 ELSKSN-ILLIGPTGSGKTLMAQTLAKHLD---------IPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKA-Q  133 (364)
T ss_dssp             TCCCCC-EEEECCTTSSHHHHHHHHHHHTT---------CCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHH-T
T ss_pred             cCCCcc-eeeeCCCCccHHHHHHHHHhhcc---------cceeehhhhhcccchhhHhhhccchhhhhhhchhHHHHh-h
Confidence            466665 56779999999999999987652         345666644211100000  00122222       2222 4


Q ss_pred             ceEEEEcCCchhh
Q 036464          141 VKVVIIDSIAFHF  153 (226)
Q Consensus       141 ~~lvVIDsl~~l~  153 (226)
                      ..+|++|++....
T Consensus       134 ~~iv~lDEieK~~  146 (364)
T d1um8a_         134 KGIVFIDEIDKIS  146 (364)
T ss_dssp             TSEEEEETGGGC-
T ss_pred             cccchhhhhhhhc
Confidence            6899999998643

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0097  Score=42.91  Aligned_cols=23  Identities=39%  Similarity=0.479  Sum_probs=20.1

Q ss_pred             EEEecCCCCChHHHHHHHHHHhc
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +++.|++|+|||+|+.+++.+-.
T Consensus         6 i~viG~~~vGKTsli~~l~~~~~   28 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQNHF   28 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCCC
T ss_pred             EEEECCCCCCHHHHHHHHHhCCC
Confidence            67889999999999999987643

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.20  E-value=0.0021  Score=47.08  Aligned_cols=30  Identities=20%  Similarity=0.158  Sum_probs=27.2

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhcc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQI  100 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~l  100 (226)
                      .++|.++.+.|+=|+|||+|+..++...-.
T Consensus        30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~   59 (158)
T d1htwa_          30 TEKAIMVYLNGDLGAGKTTLTRGMLQGIGH   59 (158)
T ss_dssp             CSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence            478999999999999999999999988754

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.13  E-value=0.0016  Score=48.57  Aligned_cols=23  Identities=30%  Similarity=0.338  Sum_probs=20.5

Q ss_pred             eEEEecCCCCChHHHHHHHHHHh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .+.|+||+|+|||+++..++...
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHHHhC
Confidence            37899999999999999998774

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.13  E-value=0.016  Score=41.52  Aligned_cols=22  Identities=23%  Similarity=0.267  Sum_probs=19.7

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+.|++|+|||+|+.+++..-
T Consensus         5 v~liG~~~vGKTsLl~~~~~~~   26 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAGR   26 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6799999999999999998764

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.11  E-value=0.0017  Score=48.71  Aligned_cols=23  Identities=26%  Similarity=0.290  Sum_probs=20.3

Q ss_pred             eEEEecCCCCChHHHHHHHHHHh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .++|+||+|+|||+++..++...
T Consensus         2 pIvl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           2 PVVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHhC
Confidence            36799999999999999988764

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.0035  Score=50.86  Aligned_cols=96  Identities=16%  Similarity=0.102  Sum_probs=52.9

Q ss_pred             CCCCCHHHHHHHHhCC-CccHHHHHhC--ChhHHhhch-HhHHHHHHHhhcccCceecCchhHHHhhCC-CCCCCeeEEE
Q 036464            5 KLPISATQRGKLISAG-YTSLSSICSA--SSSDISRGT-QTAWDMLQEEQESLARITTSCADLDNILGG-GIGCREVTEI   79 (226)
Q Consensus         5 ~l~l~~~~~~~l~~~g-~~t~~~~~~~--~~~~l~~~~-~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~G-Gi~~G~i~~i   79 (226)
                      .++|++..++.|+..| --+.+||...  +...|.+-. ..+.++..              .....|+- +-+.--++.|
T Consensus        20 ~~~l~~~~~~~~~~~~~~~~~~~v~~iylpl~~l~~~~~~~~~~~~~--------------~~~~fl~~~~~k~P~iIGI   85 (308)
T d1sq5a_          20 PMTLSEDEIARLKGINEDLSLEEVAEIYLPLSRLLNFYISSNLRRQA--------------VLEQFLGTNGQRIPYIISI   85 (308)
T ss_dssp             -C-CCHHHHHHHHHHCTTCCHHHHHHTHHHHHHHHHHHHHHHHHHHH--------------HHHHHHTCC-CCCCEEEEE
T ss_pred             CCCCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHhcccCCCCCEEEEE
Confidence            4568888888888765 2344554432  222332211 11222111              12333421 1123358999


Q ss_pred             ecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccc
Q 036464           80 GGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCL  118 (226)
Q Consensus        80 ~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~  118 (226)
                      +|++||||||+|..+......    ...+.+|..|+...
T Consensus        86 aG~sgSGKSTla~~L~~lL~~----~~~~~~v~~Is~D~  120 (308)
T d1sq5a_          86 AGSVAVGKSTTARVLQALLSR----WPEHRRVELITTDG  120 (308)
T ss_dssp             EECTTSSHHHHHHHHHHHHTT----STTCCCEEEEEGGG
T ss_pred             eCCCCCCCcHHHHHHHHHHhh----hcCCCceEEEeeee
Confidence            999999999999988877641    01346788887653

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.10  E-value=0.0018  Score=46.12  Aligned_cols=23  Identities=22%  Similarity=0.244  Sum_probs=20.1

Q ss_pred             EEEecCCCCChHHHHHHHHHHhc
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ++|+|+||+|||+|+..++.+-.
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~~~   25 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLGEI   25 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhcCCC
Confidence            57999999999999999987653

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.011  Score=44.66  Aligned_cols=53  Identities=15%  Similarity=0.121  Sum_probs=37.5

Q ss_pred             CCCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEec
Q 036464            2 EVSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGG   81 (226)
Q Consensus         2 ~~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G   81 (226)
                      ..++|+|++.+++.|.+.||++...+-..                               .+..++.     |.=+.+..
T Consensus         4 ~F~~l~L~~~l~~~l~~~g~~~pt~iQ~~-------------------------------aip~il~-----g~dvl~~a   47 (206)
T d1veca_           4 EFEDYCLKRELLMGIFEMGWEKPSPIQEE-------------------------------SIPIALS-----GRDILARA   47 (206)
T ss_dssp             SGGGSCCCHHHHHHHHTTTCCSCCHHHHH-------------------------------HHHHHHT-----TCCEEEEC
T ss_pred             ChhccCcCHHHHHHHHHCCCCCCCHHHHH-------------------------------HHHHHHc-----CCCEEeec
Confidence            35789999999999999999873332111                               1223443     34588999


Q ss_pred             CCCCChHHH
Q 036464           82 VPGIGKTQL   90 (226)
Q Consensus        82 ~~GsGKT~l   90 (226)
                      ++|+|||.-
T Consensus        48 ~TGsGKTla   56 (206)
T d1veca_          48 KNGTGKSGA   56 (206)
T ss_dssp             CSSSTTHHH
T ss_pred             cCccccccc
Confidence            999999954

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.013  Score=42.11  Aligned_cols=22  Identities=32%  Similarity=0.224  Sum_probs=19.6

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ++|.|++|+|||+|+.++..+-
T Consensus         7 ivlvG~~~vGKTsli~~~~~~~   28 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEKK   28 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6788999999999999998764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0041  Score=45.46  Aligned_cols=22  Identities=32%  Similarity=0.428  Sum_probs=19.6

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ++|.|++|+|||+|+.+++.+-
T Consensus         9 v~lvG~~~vGKTsLi~r~~~~~   30 (173)
T d2fn4a1           9 LVVVGGGGVGKSALTIQFIQSY   30 (173)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6799999999999999988654

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=96.02  E-value=0.0025  Score=50.56  Aligned_cols=38  Identities=13%  Similarity=-0.004  Sum_probs=25.9

Q ss_pred             EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK  116 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~  116 (226)
                      ..|.|+||||||+.+.+-+..++.  ..+....+|++++.
T Consensus        17 ~lI~g~aGTGKTt~l~~rv~~ll~--~~~~~~~~ILvlt~   54 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITNKIAHLIR--GCGYQARHIAAVTF   54 (306)
T ss_dssp             EEECCCTTSCHHHHHHHHHHHHHH--HHCCCGGGEEEEES
T ss_pred             EEEEeeCCccHHHHHHHHHHHHHH--hcCCChhHEEEEeC
Confidence            578899999999988776554431  01124468999883

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=95.96  E-value=0.012  Score=42.22  Aligned_cols=23  Identities=22%  Similarity=0.114  Sum_probs=19.5

Q ss_pred             EEEecCCCCChHHHHHHHHHHhc
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +.+.|++|+|||+|..++...-.
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~~~   27 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASGQF   27 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCC
T ss_pred             EEEECCCCCCHHHHHHHHHcCCC
Confidence            56889999999999999976543

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0025  Score=47.32  Aligned_cols=25  Identities=20%  Similarity=0.369  Sum_probs=21.8

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHh
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ..++.|+||+|+|||+++..++...
T Consensus         3 ~k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           3 RKTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHhC
Confidence            4578999999999999999988664

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=95.84  E-value=0.0025  Score=48.42  Aligned_cols=40  Identities=20%  Similarity=0.282  Sum_probs=32.7

Q ss_pred             cCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           58 TSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        58 Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ..+..|-..|. |.|+...+.|+|||++|||.||..++..+
T Consensus        38 ~Fl~~l~~~l~-~~PKkn~i~~~GP~~TGKS~f~~sl~~~l   77 (205)
T d1tuea_          38 TFLGALKSFLK-GTPKKNCLVFCGPANTGKSYFGMSFIHFI   77 (205)
T ss_dssp             HHHHHHHHHHH-TCTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHc-CCCCceEEEEECCCCccHHHHHHHHHHHh
Confidence            34556666674 67999999999999999999999887765

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.79  E-value=0.0017  Score=52.24  Aligned_cols=36  Identities=19%  Similarity=0.255  Sum_probs=25.5

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      ++.|+|++||||||++..+...+.      ..+-+++.|+..
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~------~~~v~~~iI~~D   41 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFR------REGVKAVSIEGD   41 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHH------HHTCCEEEEEGG
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHh------hcCCCeEEEeCC
Confidence            899999999999999998877653      234567778754

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.78  E-value=0.0042  Score=46.54  Aligned_cols=34  Identities=26%  Similarity=0.368  Sum_probs=27.7

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      ++.|.|..||||||++..++....      ..+.+|.++.
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~------~~g~~v~~~~   35 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFR------AAGRSVATLA   35 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH------HCCCCEEEEe
Confidence            688999999999999999887764      3566777765

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=95.75  E-value=0.0025  Score=47.40  Aligned_cols=21  Identities=29%  Similarity=0.368  Sum_probs=18.0

Q ss_pred             eeEEEecCCCCChHHHHHHHH
Q 036464           75 EVTEIGGVPGIGKTQLGIQLA   95 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la   95 (226)
                      -++.|+|++||||||+|..+.
T Consensus         4 ~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           4 IIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            368899999999999997663

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.75  E-value=0.0031  Score=50.63  Aligned_cols=42  Identities=21%  Similarity=0.225  Sum_probs=28.5

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      .--++.|+|++||||||++..+......-  + +....|..++..
T Consensus        26 ~P~iIGi~G~qGSGKSTl~~~l~~~L~~~--~-~~~~~v~~iS~D   67 (286)
T d1odfa_          26 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK--Y-GGEKSIGYASID   67 (286)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHH--H-GGGSCEEEEEGG
T ss_pred             CCEEEEeECCCCCCHHHHHHHHHHHHHHH--h-CCCcceEeeccC
Confidence            34588999999999999998887665310  0 123357777743

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.01  Score=42.99  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=19.7

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.|.|++|+|||+|+.+++.+-
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~~   29 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQGL   29 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6789999999999999998754

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.65  E-value=0.0072  Score=48.14  Aligned_cols=25  Identities=16%  Similarity=0.009  Sum_probs=21.2

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhcc
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQI  100 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~l  100 (226)
                      -+.|+|..|+|||||+-.++...-.
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~g~   32 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYTGR   32 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhcCc
Confidence            4789999999999999998776543

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.60  E-value=0.0035  Score=53.35  Aligned_cols=27  Identities=30%  Similarity=0.420  Sum_probs=23.0

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccc
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIP  101 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp  101 (226)
                      +-+++.||+|+|||.||..+|..+-.|
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~l~VP   76 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKLANAP   76 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            368999999999999999999876543

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.56  E-value=0.0051  Score=47.53  Aligned_cols=35  Identities=20%  Similarity=0.424  Sum_probs=27.6

Q ss_pred             cCchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           58 TSCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        58 Tg~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      .|++.|-..|.     |..+.+.|++|+|||+|.-.+.-.
T Consensus        84 ~g~~~L~~~l~-----~kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          84 MGIEELKEYLK-----GKISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             TTHHHHHHHHS-----SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             hhHhhHHHHhc-----CCeEEEECCCCCCHHHHHHhhcch
Confidence            35666666664     789999999999999999877544

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=95.52  E-value=0.0056  Score=48.90  Aligned_cols=37  Identities=16%  Similarity=-0.048  Sum_probs=25.3

Q ss_pred             EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      +.|.|+||||||+.+.+-+...+..  ..-...++++++
T Consensus        27 ~lV~g~aGSGKTt~l~~ri~~ll~~--~~~~p~~il~lt   63 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTHRIAYLMAE--KHVAPWNILAIT   63 (318)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHHT--TCCCGGGEEEEE
T ss_pred             EEEEecCCccHHHHHHHHHHHHHHc--CCCCHHHeEeEe
Confidence            6788999999999987755544310  111336788888

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=95.42  E-value=0.0042  Score=44.30  Aligned_cols=22  Identities=36%  Similarity=0.409  Sum_probs=19.6

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.|+|+||+|||+|...+...-
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999987654

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.37  E-value=0.0053  Score=45.63  Aligned_cols=25  Identities=24%  Similarity=0.310  Sum_probs=21.4

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHh
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      |.=++|.|++|+|||++++.++..-
T Consensus        14 g~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          14 GLGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcC
Confidence            5568999999999999999887653

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.25  E-value=0.049  Score=40.76  Aligned_cols=41  Identities=17%  Similarity=0.144  Sum_probs=28.3

Q ss_pred             hHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEec
Q 036464           62 DLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGK  116 (226)
Q Consensus        62 ~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~  116 (226)
                      .++.++.+     .-..|.+|+|+|||.++..++...         +.+++++..
T Consensus        78 av~~~~~~-----~~~ll~~~tG~GKT~~a~~~~~~~---------~~~~Liv~p  118 (206)
T d2fz4a1          78 ALERWLVD-----KRGCIVLPTGSGKTHVAMAAINEL---------STPTLIVVP  118 (206)
T ss_dssp             HHHHHTTT-----SEEEEEESSSTTHHHHHHHHHHHS---------CSCEEEEES
T ss_pred             HHHHHHhC-----CCcEEEeCCCCCceehHHhHHHHh---------cCceeEEEc
Confidence            45555543     234688999999999888776553         357888773

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.24  E-value=0.0058  Score=45.42  Aligned_cols=25  Identities=24%  Similarity=0.316  Sum_probs=21.2

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHh
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      |.=++|.|++|+|||++++.+...-
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHcC
Confidence            5568999999999999999887543

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.22  E-value=0.0054  Score=43.34  Aligned_cols=22  Identities=27%  Similarity=0.155  Sum_probs=18.9

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ++|.|+||+|||+|...+...-
T Consensus         3 I~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            5688999999999999987653

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=95.22  E-value=0.0068  Score=50.64  Aligned_cols=34  Identities=24%  Similarity=0.271  Sum_probs=28.0

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      -+.|.|++|+|||+++..++.+..      ..+.+++.+|
T Consensus        52 H~~I~G~tGsGKT~~l~~li~~~~------~~g~~~iiiD   85 (433)
T d1e9ra_          52 HLLVNGATGTGKSVLLRELAYTGL------LRGDRMVIVD   85 (433)
T ss_dssp             CEEEEECTTSSHHHHHHHHHHHHH------HTTCEEEEEE
T ss_pred             eEEEEeCCCCcHHHHHHHHHHHHH------hCCCCEEEEe
Confidence            379999999999999888887765      3567788888

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=95.21  E-value=0.0051  Score=44.61  Aligned_cols=24  Identities=29%  Similarity=0.357  Sum_probs=20.3

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHH
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      .-=+.|+|.||+|||+|+.++...
T Consensus        15 ~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          15 EHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            345789999999999999998754

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.20  E-value=0.038  Score=39.38  Aligned_cols=22  Identities=23%  Similarity=0.240  Sum_probs=19.4

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++.|.+|+|||+|+.++..+-
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~~   24 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYDS   24 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            5788999999999999998654

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.11  E-value=0.0045  Score=44.92  Aligned_cols=25  Identities=24%  Similarity=0.093  Sum_probs=20.0

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHH
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      +.-=++|.|++|+|||+|..++...
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3344779999999999999887543

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.08  E-value=0.0062  Score=43.92  Aligned_cols=22  Identities=14%  Similarity=0.235  Sum_probs=19.4

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+.|+||+|||+|+.++...-
T Consensus         5 v~liG~~~vGKSsLi~rl~~~~   26 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCKGI   26 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6789999999999999998653

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.06  E-value=0.0073  Score=44.54  Aligned_cols=26  Identities=27%  Similarity=0.322  Sum_probs=22.1

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      |.=++|.|++|+|||++++.++..-.
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~g~   40 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKRGH   40 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHTTC
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHcCC
Confidence            55689999999999999998877643

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=94.93  E-value=0.0068  Score=43.60  Aligned_cols=22  Identities=18%  Similarity=0.120  Sum_probs=18.9

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ++|.|++|+|||+|..++....
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEECCCCCCHHHHHHHHcCCC
Confidence            6799999999999999886543

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.88  E-value=0.031  Score=43.41  Aligned_cols=38  Identities=13%  Similarity=0.083  Sum_probs=26.7

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      ..-+.|.|++|+||+.+|..+.....      ......+-++..
T Consensus        23 ~~pvlI~Ge~GtGK~~~A~~ih~~s~------~~~~~~~~~~~~   60 (247)
T d1ny5a2          23 ECPVLITGESGVGKEVVARLIHKLSD------RSKEPFVALNVA   60 (247)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHHHST------TTTSCEEEEETT
T ss_pred             CCCEEEECCCCcCHHHHHHHHHHhcC------Ccccccccchhh
Confidence            34489999999999999988765432      344555666643

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=94.86  E-value=0.042  Score=40.06  Aligned_cols=20  Identities=35%  Similarity=0.209  Sum_probs=18.1

Q ss_pred             EEEecCCCCChHHHHHHHHH
Q 036464           77 TEIGGVPGIGKTQLGIQLAV   96 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~   96 (226)
                      +.|.|.|++|||||.-.++.
T Consensus         8 IaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            78999999999999988873

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.86  E-value=0.0073  Score=43.98  Aligned_cols=23  Identities=30%  Similarity=0.267  Sum_probs=19.8

Q ss_pred             EEEecCCCCChHHHHHHHHHHhc
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ++++|++|+|||+|+.++...-.
T Consensus         6 ivvvG~~~vGKTsli~r~~~~~~   28 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDKRF   28 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSCC
T ss_pred             EEEECCCCcCHHHHHHHHhcCCC
Confidence            57899999999999999886643

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.84  E-value=0.0043  Score=50.37  Aligned_cols=22  Identities=27%  Similarity=0.128  Sum_probs=19.5

Q ss_pred             eEEEecCCCCChHHHHHHHHHH
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      -++|.|+||+|||+++..++.-
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~i   51 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAAL   51 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHh
Confidence            4799999999999999988863

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.83  E-value=0.0079  Score=43.42  Aligned_cols=22  Identities=27%  Similarity=0.498  Sum_probs=19.6

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.++|++|+|||+|+.+++..-
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~~   27 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6789999999999999998764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=94.74  E-value=0.0088  Score=45.17  Aligned_cols=20  Identities=25%  Similarity=0.423  Sum_probs=17.6

Q ss_pred             eEEEecCCCCChHHHHHHHH
Q 036464           76 VTEIGGVPGIGKTQLGIQLA   95 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la   95 (226)
                      ++.|+|.+||||||+|..+.
T Consensus         5 iIgitG~igSGKStv~~~l~   24 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFA   24 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHH
Confidence            78899999999999997554

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.74  E-value=0.0084  Score=44.07  Aligned_cols=21  Identities=29%  Similarity=0.267  Sum_probs=18.6

Q ss_pred             EEEecCCCCChHHHHHHHHHH
Q 036464           77 TEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~   97 (226)
                      ++|.|++|+|||+|+.+++..
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            678999999999999988754

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=94.71  E-value=0.0086  Score=45.09  Aligned_cols=20  Identities=25%  Similarity=0.335  Sum_probs=17.1

Q ss_pred             eeEEEecCCCCChHHHHHHH
Q 036464           75 EVTEIGGVPGIGKTQLGIQL   94 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~l   94 (226)
                      -++.|+|.+||||||+|.-+
T Consensus         3 ~iIgITG~igSGKStv~~~l   22 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLF   22 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            36889999999999998654

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.70  E-value=0.0089  Score=43.37  Aligned_cols=22  Identities=32%  Similarity=0.326  Sum_probs=19.4

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+.|++|+|||+|+.++...-
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~~   26 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVNDK   26 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHcCC
Confidence            6799999999999999988654

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.69  E-value=0.009  Score=43.27  Aligned_cols=21  Identities=33%  Similarity=0.395  Sum_probs=18.6

Q ss_pred             eEEEecCCCCChHHHHHHHHH
Q 036464           76 VTEIGGVPGIGKTQLGIQLAV   96 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~   96 (226)
                      .+.|.|+||+|||+|..+++.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999998863

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.66  E-value=0.0092  Score=43.22  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=19.6

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++.|++|+|||+|+.+++.+-
T Consensus         5 i~lvG~~~vGKTsli~r~~~~~   26 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTKR   26 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            5789999999999999998754

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.63  E-value=0.0095  Score=43.09  Aligned_cols=22  Identities=23%  Similarity=0.456  Sum_probs=19.1

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+.|++|+|||+|+.+++.+-
T Consensus         5 i~viG~~~vGKTsLi~r~~~~~   26 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVKGT   26 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            5788999999999999988654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.0095  Score=43.02  Aligned_cols=22  Identities=27%  Similarity=0.288  Sum_probs=19.5

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ++|.|.+|+|||+|+.+++.+-
T Consensus         6 ivlvG~~~vGKTsLi~r~~~~~   27 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCENK   27 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            5789999999999999988654

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.62  E-value=0.009  Score=43.46  Aligned_cols=22  Identities=27%  Similarity=0.311  Sum_probs=19.8

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ++++|++|+|||+|+.++...-
T Consensus         9 I~vvG~~~vGKSSli~~~~~~~   30 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTNK   30 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            7899999999999999998754

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.61  E-value=0.012  Score=43.53  Aligned_cols=34  Identities=26%  Similarity=0.346  Sum_probs=25.3

Q ss_pred             EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      +++++|+|+|||..+..++.....     +.+++++|+.
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~~~~~-----~~~~~il~i~   59 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAEYRLT-----KYGGKVLMLA   59 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHH-----HSCSCEEEEC
T ss_pred             eEEEeCCCCcHHHHHHHHHHHHHH-----hcCCcEEEEc
Confidence            578899999999877766655432     3456899987

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.61  E-value=0.012  Score=48.53  Aligned_cols=26  Identities=27%  Similarity=0.355  Sum_probs=21.1

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHH
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAV   96 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~   96 (226)
                      +..+.++.|+|++|+|||++.-.++.
T Consensus        22 f~~~~l~~i~G~NGsGKS~ileAi~~   47 (427)
T d1w1wa_          22 FGESNFTSIIGPNGSGKSNMMDAISF   47 (427)
T ss_dssp             CTTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            34456899999999999999777654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.60  E-value=0.0093  Score=43.19  Aligned_cols=22  Identities=27%  Similarity=0.270  Sum_probs=19.7

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.++|++|+|||+|+..++.+-
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~~   29 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADDS   29 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHcCC
Confidence            6899999999999999998764

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=94.59  E-value=0.02  Score=45.21  Aligned_cols=33  Identities=24%  Similarity=0.211  Sum_probs=28.8

Q ss_pred             hhCCCCCCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           66 ILGGGIGCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        66 ~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .|.|+.+....+.|.||+++|||+|+..++..+
T Consensus        96 ~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_          96 WATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             HHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             HHcCCCCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            466899999999999999999999998777654

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.56  E-value=0.0067  Score=44.96  Aligned_cols=26  Identities=23%  Similarity=0.045  Sum_probs=21.7

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.-++.|.|..||||||++..++...
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            34589999999999999998877554

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.53  E-value=0.0086  Score=45.04  Aligned_cols=52  Identities=15%  Similarity=0.162  Sum_probs=36.8

Q ss_pred             CCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEecC
Q 036464            3 VSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV   82 (226)
Q Consensus         3 ~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~   82 (226)
                      .++|||++.+++.|++.||+....        +++   .|+.                    .++.     |+-+.+.+|
T Consensus         3 F~~l~L~~~l~~~l~~~g~~~pt~--------iQ~---~aip--------------------~~l~-----G~dvii~a~   46 (209)
T d1q0ua_           3 FTRFPFQPFIIEAIKTLRFYKPTE--------IQE---RIIP--------------------GALR-----GESMVGQSQ   46 (209)
T ss_dssp             GGGSCCCHHHHHHHHHTTCCSCCH--------HHH---HHHH--------------------HHHH-----TCCEEEECC
T ss_pred             cccCCcCHHHHHHHHHCCCCCCCH--------HHH---HHHH--------------------HHHC-----CCCeEeecc
Confidence            578999999999999999986332        222   1122                    2232     445889999


Q ss_pred             CCCChHHH
Q 036464           83 PGIGKTQL   90 (226)
Q Consensus        83 ~GsGKT~l   90 (226)
                      +|||||.-
T Consensus        47 TGSGKTla   54 (209)
T d1q0ua_          47 TGTGKTHA   54 (209)
T ss_dssp             SSHHHHHH
T ss_pred             ccccccee
Confidence            99999963

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.47  E-value=0.011  Score=42.80  Aligned_cols=22  Identities=18%  Similarity=0.300  Sum_probs=19.5

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++.|++|+|||+|+.++...-
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~~   30 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKGQ   30 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            5789999999999999998664

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.44  E-value=0.013  Score=43.81  Aligned_cols=23  Identities=26%  Similarity=0.211  Sum_probs=20.1

Q ss_pred             eEEEecCCCCChHHHHHHHHHHh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -++|.|+||+|||+|+.++...-
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~   24 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQ   24 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999998653

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.40  E-value=0.011  Score=42.59  Aligned_cols=22  Identities=32%  Similarity=0.415  Sum_probs=19.4

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.|.|++|+|||+|+.+++..-
T Consensus         7 v~liG~~~vGKTsLl~~~~~~~   28 (167)
T d1xtqa1           7 IAILGYRSVGKSSLTIQFVEGQ   28 (167)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6788999999999999988654

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.38  E-value=0.011  Score=43.00  Aligned_cols=22  Identities=27%  Similarity=0.179  Sum_probs=19.6

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++.|.+|+|||+|+.++...-
T Consensus         8 I~lvG~~~vGKTsll~~~~~~~   29 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEKK   29 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6899999999999999998654

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.36  E-value=0.011  Score=42.46  Aligned_cols=22  Identities=23%  Similarity=0.342  Sum_probs=19.3

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+.|++|+|||+|..+++..-
T Consensus         5 i~vvG~~~vGKTSli~~l~~~~   26 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVEDK   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            5789999999999999988654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.34  E-value=0.012  Score=42.81  Aligned_cols=22  Identities=27%  Similarity=0.365  Sum_probs=19.5

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+.|++|+|||+|+.++...-
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~~   28 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRNE   28 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999999987654

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.33  E-value=0.012  Score=43.16  Aligned_cols=22  Identities=36%  Similarity=0.314  Sum_probs=19.2

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ++++|.+|+|||+|+.+++..-
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~~   26 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNKK   26 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6799999999999999987643

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.31  E-value=0.013  Score=42.33  Aligned_cols=22  Identities=27%  Similarity=0.502  Sum_probs=19.6

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ++++|.+|+|||+|+.++...-
T Consensus         6 ivvvG~~~vGKTsli~r~~~~~   27 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCCCHHHHHHHHHcCC
Confidence            6789999999999999998764

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.24  E-value=0.013  Score=42.29  Aligned_cols=22  Identities=18%  Similarity=0.321  Sum_probs=19.4

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++.|++|+|||+|+.++...-
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~~   27 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            5788999999999999998764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.014  Score=42.25  Aligned_cols=21  Identities=29%  Similarity=0.444  Sum_probs=18.2

Q ss_pred             EEEecCCCCChHHHHHHHHHH
Q 036464           77 TEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~   97 (226)
                      +++.|++|+|||+|+.++...
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCcCHHHHHHHHhCC
Confidence            578999999999999988654

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.014  Score=42.22  Aligned_cols=22  Identities=27%  Similarity=0.374  Sum_probs=19.6

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+.|++|+|||+|+.++...-
T Consensus         9 i~vvG~~~vGKTsli~~~~~~~   30 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDGA   30 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            7899999999999999988753

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.18  E-value=0.0068  Score=46.24  Aligned_cols=26  Identities=19%  Similarity=0.049  Sum_probs=22.7

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ++.++.|-|+-||||||++..++...
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            36789999999999999999887764

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.16  E-value=0.018  Score=43.70  Aligned_cols=26  Identities=23%  Similarity=0.161  Sum_probs=23.5

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +|.++.|.|.-||||||++..++...
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L   27 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKL   27 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHH
Confidence            68999999999999999998887665

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.13  E-value=0.022  Score=42.90  Aligned_cols=74  Identities=9%  Similarity=0.065  Sum_probs=44.7

Q ss_pred             CCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEecC
Q 036464            3 VSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV   82 (226)
Q Consensus         3 ~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~   82 (226)
                      .++|+|++++++.|.+.||+....+-..           |+                    -.++.     |+=+.+.++
T Consensus         3 F~dl~L~~~l~~~l~~~g~~~pt~iQ~~-----------ai--------------------p~il~-----g~dvl~~A~   46 (207)
T d1t6na_           3 FRDFLLKPELLRAIVDCGFEHPSEVQHE-----------CI--------------------PQAIL-----GMDVLCQAK   46 (207)
T ss_dssp             STTSCCCHHHHHHHHHTTCCCCCHHHHH-----------HH--------------------HHHHT-----TCCEEEECC
T ss_pred             ccccCcCHHHHHHHHHCCCCCCCHHHHH-----------HH--------------------HHHHc-----CCCeEEEec
Confidence            4688999999999999999973332211           11                    11232     345889999


Q ss_pred             CCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           83 PGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        83 ~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      +|+|||.-..--+.+...+   ...+..++++.
T Consensus        47 TGsGKTla~~lp~l~~~~~---~~~~~~~lil~   76 (207)
T d1t6na_          47 SGMGKTAVFVLATLQQLEP---VTGQVSVLVMC   76 (207)
T ss_dssp             TTSCHHHHHHHHHHHHCCC---CTTCCCEEEEC
T ss_pred             cccccccccccceeeeecc---cCCCceEEEEe
Confidence            9999975433222333221   12234566665

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.013  Score=42.67  Aligned_cols=22  Identities=32%  Similarity=0.125  Sum_probs=19.3

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++.|++|+|||+|+.+++..-
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~~   26 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKDQ   26 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            5688999999999999988764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.10  E-value=0.014  Score=42.09  Aligned_cols=23  Identities=17%  Similarity=0.265  Sum_probs=19.8

Q ss_pred             EEEecCCCCChHHHHHHHHHHhc
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      ++|.|.+|+|||+|+.++...-.
T Consensus         7 i~lvG~~~vGKTsli~rl~~~~f   29 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVEDSF   29 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCCC
Confidence            57889999999999999987543

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.09  E-value=0.014  Score=43.37  Aligned_cols=22  Identities=23%  Similarity=0.363  Sum_probs=19.7

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ++|.|++|+|||+|+.++...-
T Consensus         9 ivvvG~~~vGKTsli~~l~~~~   30 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDDT   30 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHhhCC
Confidence            6889999999999999998654

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=94.06  E-value=0.017  Score=40.99  Aligned_cols=22  Identities=36%  Similarity=0.368  Sum_probs=18.9

Q ss_pred             eEEEecCCCCChHHHHHHHHHH
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      -+.+.|+|++|||+|..+++..
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999888743

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.02  E-value=0.0025  Score=46.80  Aligned_cols=23  Identities=26%  Similarity=0.382  Sum_probs=19.3

Q ss_pred             eEEEecCCCCChHHHHHHHHHHh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++|+|++|+|||+++-.+....
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            78899999999999987776443

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.02  E-value=0.014  Score=42.45  Aligned_cols=21  Identities=24%  Similarity=0.313  Sum_probs=18.4

Q ss_pred             eEEEecCCCCChHHHHHHHHH
Q 036464           76 VTEIGGVPGIGKTQLGIQLAV   96 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~   96 (226)
                      -+.|+|+||+|||+|...+..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            378999999999999988864

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.91  E-value=0.013  Score=46.38  Aligned_cols=44  Identities=7%  Similarity=0.003  Sum_probs=28.5

Q ss_pred             CceEEEEcCCchhhhcCcCChHHHHHHHHHHHHHHHHHHHHcCCEEEEecccccc
Q 036464          140 DVKVVIIDSIAFHFRHGFVDLALRTRVLSGIALKLMNLAKKFSLALLEPNLATTA  194 (226)
Q Consensus       140 ~~~lvVIDsl~~l~~~~~~~~~~r~~~l~~~~~~L~~la~~~~~~vi~~nq~~~~  194 (226)
                      +..+++||++.+.+.+         .....++..|+..++  +.-||+|.|-..-
T Consensus       241 ~~~~~~iDEpe~~Lhp---------~~~~~l~~~l~~~~~--~~QviitTHsp~~  284 (308)
T d1e69a_         241 PSPFYVLDEVDSPLDD---------YNAERFKRLLKENSK--HTQFIVITHNKIV  284 (308)
T ss_dssp             CCSEEEEESCCSSCCH---------HHHHHHHHHHHHHTT--TSEEEEECCCTTG
T ss_pred             cCchhhhhhccccCCH---------HHHHHHHHHHHHhcc--CCEEEEEECCHHH
Confidence            5678899998865532         223456666666653  5778888887543

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.90  E-value=0.017  Score=41.99  Aligned_cols=21  Identities=29%  Similarity=0.328  Sum_probs=18.4

Q ss_pred             EEEecCCCCChHHHHHHHHHH
Q 036464           77 TEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~   97 (226)
                      +++.|++|+|||+|+.+++..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~   26 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGV   26 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999988754

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=93.87  E-value=0.028  Score=40.51  Aligned_cols=22  Identities=36%  Similarity=0.249  Sum_probs=18.7

Q ss_pred             eeEEEecCCCCChHHHHHHHHH
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAV   96 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~   96 (226)
                      --+.++|++|+|||+|+.++..
T Consensus        17 ~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          17 VRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            3478999999999999988754

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.87  E-value=0.18  Score=37.56  Aligned_cols=20  Identities=30%  Similarity=0.210  Sum_probs=17.7

Q ss_pred             EEEecCCCCChHHHHHHHHH
Q 036464           77 TEIGGVPGIGKTQLGIQLAV   96 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~   96 (226)
                      +.+.|.+++|||||+-++..
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~   25 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTY   25 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            68899999999999988864

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.86  E-value=0.0078  Score=46.64  Aligned_cols=34  Identities=26%  Similarity=0.321  Sum_probs=25.4

Q ss_pred             CchhHHHhhCCCCCCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           59 SCADLDNILGGGIGCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        59 g~~~LD~~l~GGi~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      |++.|-..|     .|..+.+.|++|+|||+|.-.+...
T Consensus        87 gl~~L~~~l-----~~~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          87 SLADIIPHF-----QDKTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             TCTTTGGGG-----TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHhh-----ccceEEEECCCCccHHHHHHhhccH
Confidence            555555555     3678899999999999999776544

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.83  E-value=0.017  Score=42.10  Aligned_cols=23  Identities=26%  Similarity=0.372  Sum_probs=19.9

Q ss_pred             EEEecCCCCChHHHHHHHHHHhc
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +.++|++|+|||+|..++..+-.
T Consensus        10 i~vvG~~~vGKTsli~~l~~~~~   32 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDDTF   32 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCCC
Confidence            67999999999999999887543

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.81  E-value=0.018  Score=41.69  Aligned_cols=23  Identities=30%  Similarity=0.416  Sum_probs=19.5

Q ss_pred             EEEecCCCCChHHHHHHHHHHhc
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +.+.|++|+|||+|+.+++..-.
T Consensus         7 i~lvG~~~vGKTsll~~~~~~~~   29 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQKIF   29 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCCC
Confidence            56789999999999999987543

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.80  E-value=0.02  Score=41.58  Aligned_cols=22  Identities=32%  Similarity=0.348  Sum_probs=19.6

Q ss_pred             eEEEecCCCCChHHHHHHHHHH
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      .+.|+|.+|+|||+|...++..
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999888754

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=93.69  E-value=0.01  Score=43.08  Aligned_cols=21  Identities=24%  Similarity=0.309  Sum_probs=18.2

Q ss_pred             EEEecCCCCChHHHHHHHHHH
Q 036464           77 TEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~   97 (226)
                      ++++|+||+|||+|..+++..
T Consensus        15 IvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_          15 ILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             EEEEEETTSSHHHHHHHTTCC
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            678999999999999987644

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.69  E-value=0.021  Score=41.79  Aligned_cols=26  Identities=27%  Similarity=0.180  Sum_probs=21.6

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.==+.|.|++|+|||+|+.+++..-
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~~   29 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTNA   29 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhCC
Confidence            33347899999999999999998764

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.58  E-value=0.014  Score=42.64  Aligned_cols=19  Identities=26%  Similarity=0.475  Sum_probs=17.0

Q ss_pred             EEEecCCCCChHHHHHHHH
Q 036464           77 TEIGGVPGIGKTQLGIQLA   95 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la   95 (226)
                      +.|.|+|++|||+|...+.
T Consensus         4 VaiiG~~nvGKSSLin~L~   22 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVS   22 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSE
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            6899999999999998764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.49  E-value=0.019  Score=42.15  Aligned_cols=22  Identities=27%  Similarity=0.271  Sum_probs=19.8

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.|.|.+|+|||+|..+++.+-
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~~   33 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYANDA   33 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHhhCC
Confidence            7899999999999999988754

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=93.36  E-value=0.014  Score=42.56  Aligned_cols=27  Identities=30%  Similarity=0.324  Sum_probs=21.5

Q ss_pred             CCCCCeeEEEecCCCCChHHHHHHHHH
Q 036464           70 GIGCREVTEIGGVPGIGKTQLGIQLAV   96 (226)
Q Consensus        70 Gi~~G~i~~i~G~~GsGKT~l~~~la~   96 (226)
                      |-.+.-=+.+.|++|+|||+|..++..
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhc
Confidence            345555678999999999999988753

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.35  E-value=0.022  Score=41.98  Aligned_cols=23  Identities=30%  Similarity=0.247  Sum_probs=19.9

Q ss_pred             EEEecCCCCChHHHHHHHHHHhc
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +++.|++|+|||+|+.+++..-.
T Consensus         6 vvllG~~~vGKTSli~r~~~~~f   28 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTNKF   28 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSCC
T ss_pred             EEEECCCCcCHHHHHHHHHhCCC
Confidence            67889999999999999986653

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=93.32  E-value=0.029  Score=42.76  Aligned_cols=23  Identities=22%  Similarity=0.231  Sum_probs=20.0

Q ss_pred             eeEEEecCCCCChHHHHHHHHHH
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      .++.|+|..||||||+|..++..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            47899999999999999877655

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.31  E-value=0.023  Score=41.56  Aligned_cols=22  Identities=27%  Similarity=0.187  Sum_probs=19.7

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++.|++|+|||+|+.+++..-
T Consensus         5 ivliG~~~vGKTsli~r~~~~~   26 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKDC   26 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            5789999999999999998764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.30  E-value=0.011  Score=42.91  Aligned_cols=22  Identities=23%  Similarity=0.157  Sum_probs=17.1

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+.|++|+|||+|+.+++..-
T Consensus         6 i~vvG~~~vGKTsli~~~~~~~   27 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTGE   27 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC---
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            5788999999999998876553

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.26  E-value=0.028  Score=40.52  Aligned_cols=21  Identities=33%  Similarity=0.398  Sum_probs=18.9

Q ss_pred             eEEEecCCCCChHHHHHHHHH
Q 036464           76 VTEIGGVPGIGKTQLGIQLAV   96 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~   96 (226)
                      ++.|.|.|++|||+|.-.+..
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999874

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.25  E-value=0.023  Score=41.75  Aligned_cols=19  Identities=21%  Similarity=0.163  Sum_probs=17.3

Q ss_pred             EEEecCCCCChHHHHHHHH
Q 036464           77 TEIGGVPGIGKTQLGIQLA   95 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la   95 (226)
                      ++|.|.+|+|||+|+.++.
T Consensus         5 ivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            6789999999999999994

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=93.19  E-value=0.072  Score=41.81  Aligned_cols=23  Identities=30%  Similarity=0.349  Sum_probs=19.6

Q ss_pred             eEEEecCCCCChHHHHHHHHHHh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+.|.|..|+|||||+-++....
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~   26 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKT   26 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHc
Confidence            47889999999999999886554

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.16  E-value=0.025  Score=43.27  Aligned_cols=52  Identities=15%  Similarity=0.228  Sum_probs=36.3

Q ss_pred             CCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEecC
Q 036464            3 VSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV   82 (226)
Q Consensus         3 ~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~   82 (226)
                      .++|+|++.+++.|++.||+....        +++   .                    .+..++.     |.-+.+.++
T Consensus        19 F~~l~L~~~l~~~L~~~g~~~pt~--------IQ~---~--------------------aIp~il~-----g~dvi~~a~   62 (222)
T d2j0sa1          19 FDTMGLREDLLRGIYAYGFEKPSA--------IQQ---R--------------------AIKQIIK-----GRDVIAQSQ   62 (222)
T ss_dssp             GGGGCCCHHHHHHHHHHTCCSCCH--------HHH---H--------------------HHHHHHT-----TCCEEEECC
T ss_pred             HHHCCCCHHHHHHHHHCCCCCCCH--------HHH---H--------------------HHHHHHC-----CCCeEEEcC
Confidence            467899999999999999987322        211   0                    1222443     356888999


Q ss_pred             CCCChHHH
Q 036464           83 PGIGKTQL   90 (226)
Q Consensus        83 ~GsGKT~l   90 (226)
                      +|||||.-
T Consensus        63 TGSGKTla   70 (222)
T d2j0sa1          63 SGTGKTAT   70 (222)
T ss_dssp             TTSSHHHH
T ss_pred             cchhhhhh
Confidence            99999854

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.15  E-value=0.014  Score=42.30  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=8.2

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+.|.+|+|||+|+.+++.+-
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~~   30 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSEDA   30 (173)
T ss_dssp             EEEECCCCC-------------
T ss_pred             EEEECCCCcCHHHHHHHHHhCC
Confidence            6788999999999999887644

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.95  E-value=0.028  Score=41.08  Aligned_cols=22  Identities=18%  Similarity=0.128  Sum_probs=19.6

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.+.|++|+|||+|+.+++..-
T Consensus         8 i~vlG~~~vGKTsLi~~~~~~~   29 (175)
T d2bmja1           8 LGVLGDARSGKSSLIHRFLTGS   29 (175)
T ss_dssp             EEEECCTTTTHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhCC
Confidence            6788999999999999998764

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.81  E-value=0.036  Score=42.14  Aligned_cols=24  Identities=21%  Similarity=0.203  Sum_probs=21.6

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHh
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      .++.|-|.-||||||++..++...
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l   26 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHH
Confidence            478999999999999999998775

>d1jx4a2 e.8.1.7 (A:1-240) DinB homolog (DBH) {Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]}

class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: Lesion bypass DNA polymerase (Y-family), catalytic domain
domain: DinB homolog (DBH)
species: Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]

Probab=92.67  E-value=0.063  Score=41.36  Aligned_cols=39  Identities=18%  Similarity=0.268  Sum_probs=35.7

Q ss_pred             CCCCCCC-CCHHHHHHHHhCCCccHHHHHhCChhHHhhch
Q 036464            1 MEVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISRGT   39 (226)
Q Consensus         1 ~~~~~l~-l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~   39 (226)
                      +|++.|+ +++++.++|++.|++|+.|++..+..+|.+.+
T Consensus       178 lpl~~l~GiG~~~~~~L~~~Gi~t~gdl~~~~~~~L~~~f  217 (240)
T d1jx4a2         178 LDIADVPGIGNITAEKLKKLGINKLVDTLSIEFDKLKGMI  217 (240)
T ss_dssp             SBGGGSTTCCHHHHHHHHTTTCCBGGGGGSSCHHHHHHHH
T ss_pred             cchhhcCCCCHHHHHHHHHhCCCcHHHHHcCCHHHHHHHH
Confidence            5899998 99999999999999999999999999988743

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.66  E-value=0.022  Score=41.46  Aligned_cols=20  Identities=25%  Similarity=0.383  Sum_probs=17.7

Q ss_pred             EEEecCCCCChHHHHHHHHH
Q 036464           77 TEIGGVPGIGKTQLGIQLAV   96 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~   96 (226)
                      +.|+|.|++|||+|...++.
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            68999999999999988763

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=92.37  E-value=0.018  Score=41.54  Aligned_cols=20  Identities=20%  Similarity=0.200  Sum_probs=17.1

Q ss_pred             eEEEecCCCCChHHHHHHHH
Q 036464           76 VTEIGGVPGIGKTQLGIQLA   95 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la   95 (226)
                      -+.|+|+|++|||+|...+.
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~   37 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLT   37 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTC
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            38899999999999996653

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.23  E-value=0.046  Score=41.39  Aligned_cols=25  Identities=16%  Similarity=0.106  Sum_probs=21.2

Q ss_pred             EEEecCCCCChHHHHHHHHHHhccc
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQIP  101 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~lp  101 (226)
                      +++.|++|+|||+|..++...-..|
T Consensus         9 illlG~~~vGKTsll~~~~~~~~~p   33 (221)
T d1azta2           9 LLLLGAGESGKSTIVKQMRILHVVL   33 (221)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred             EEEECCCCCCHHHHHHHHhcCCcCC
Confidence            6889999999999999997665544

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=92.18  E-value=0.042  Score=39.86  Aligned_cols=21  Identities=29%  Similarity=0.377  Sum_probs=18.3

Q ss_pred             EEEecCCCCChHHHHHHHHHH
Q 036464           77 TEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~   97 (226)
                      +.|.|.+|+|||+|.-.++..
T Consensus        11 V~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2          11 VAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHHCC
Confidence            789999999999999887643

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.17  E-value=0.046  Score=39.83  Aligned_cols=22  Identities=18%  Similarity=0.102  Sum_probs=19.5

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++.|.+|+|||+|..++...-
T Consensus         5 iv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            5789999999999999997664

>d1u9la_ a.60.4.2 (A:) Transcription elongation protein NusA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: SAM domain-like
superfamily: Rad51 N-terminal domain-like
family: NusA extra C-terminal domains
domain: Transcription elongation protein NusA
species: Escherichia coli [TaxId: 562]

Probab=92.11  E-value=0.071  Score=32.75  Aligned_cols=33  Identities=15%  Similarity=0.310  Sum_probs=30.8

Q ss_pred             CCCCCHHHHHHHHhCCCccHHHHHhCChhHHhh
Q 036464            5 KLPISATQRGKLISAGYTSLSSICSASSSDISR   37 (226)
Q Consensus         5 ~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~   37 (226)
                      .|.+.+.+...|.+.||.|++++.+.+..+|..
T Consensus        11 ~LdVDe~lA~lLv~EGF~siEeIAyv~~~eL~~   43 (68)
T d1u9la_          11 YLDIDEDFATVLVEEGFSTLEELAYVPMKELLE   43 (68)
T ss_dssp             HHTCCHHHHHHHHHTTCCCHHHHHHSCHHHHTT
T ss_pred             HcCCcHHHHHHHHHhccCcHHHHhcCCHHHHHH
Confidence            467889999999999999999999999999987

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.70  E-value=0.059  Score=39.02  Aligned_cols=22  Identities=18%  Similarity=0.137  Sum_probs=19.2

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +++.|..|+|||+|..++...-
T Consensus         5 ivllG~~~vGKTsl~~r~~~~~   26 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKIIH   26 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhhCC
Confidence            5789999999999999987654

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.55  E-value=0.018  Score=40.87  Aligned_cols=22  Identities=32%  Similarity=0.341  Sum_probs=19.1

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.|.|+|++|||+|...+...-
T Consensus         3 I~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6789999999999999987553

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=91.43  E-value=0.098  Score=38.69  Aligned_cols=32  Identities=16%  Similarity=0.108  Sum_probs=21.7

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      .-+.++.|+|+|||.... +....        ....++|+.
T Consensus        41 ~~vlv~apTGsGKT~~~~-~~~~~--------~~~~~~~v~   72 (206)
T d1oywa2          41 RDCLVVMPTGGGKSLCYQ-IPALL--------LNGLTVVVS   72 (206)
T ss_dssp             CCEEEECSCHHHHHHHHH-HHHHH--------SSSEEEEEC
T ss_pred             CCEEEEcCCCCCCcchhh-hhhhh--------ccCceEEec
Confidence            457899999999987653 32221        346778876

>d1zeta2 e.8.1.7 (A:27-299) DNA polymerase iota {Human (Homo sapiens) [TaxId: 9606]}

class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: Lesion bypass DNA polymerase (Y-family), catalytic domain
domain: DNA polymerase iota
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.23  E-value=0.13  Score=40.18  Aligned_cols=47  Identities=15%  Similarity=0.188  Sum_probs=38.9

Q ss_pred             CCCCCC-CCHHHHHHHHhCCCccHHHHHhCChhHHhhch--HhHHHHHHH
Q 036464            2 EVSKLP-ISATQRGKLISAGYTSLSSICSASSSDISRGT--QTAWDMLQE   48 (226)
Q Consensus         2 ~~~~l~-l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~--~~a~~l~~~   48 (226)
                      |++.+| ++.++.++|++.|+.|+.|+...+...|.+.+  ..+..+++.
T Consensus       209 pv~~l~GiG~~~~~~L~~~GI~ti~dl~~~~~~~L~~~fG~~~g~~l~~~  258 (273)
T d1zeta2         209 HIKEIPGIGYKTAKCLEALGINSVRDLQTFSPKILEKELGISVAQRIQKL  258 (273)
T ss_dssp             SGGGSTTCCHHHHHHHHTTTCCSHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHhcCCCHHHHHHHHHhCCCcHHHHhcCCHHHHHHHHCHHHHHHHHHH
Confidence            688999 99999999999999999999999999998844  234444443

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.17  E-value=0.059  Score=42.32  Aligned_cols=38  Identities=16%  Similarity=0.107  Sum_probs=30.5

Q ss_pred             CeeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEecc
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKC  117 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e  117 (226)
                      ....+|.|..|||||.++...+..+.      ..+..|+++--+
T Consensus       104 ~m~rLL~GdvGSGKT~Va~~a~~~~~------~~g~q~~~m~Pt  141 (264)
T d1gm5a3         104 PMNRLLQGDVGSGKTVVAQLAILDNY------EAGFQTAFMVPT  141 (264)
T ss_dssp             CCCCEEECCSSSSHHHHHHHHHHHHH------HHTSCEEEECSC
T ss_pred             cceeeeeccccccccHHHHHHHHHHH------hcccceeEEeeh
Confidence            34578999999999999998888876      467788887643

>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: SAM domain-like
superfamily: RuvA domain 2-like
family: Excinuclease UvrC C-terminal domain
domain: Excinuclease UvrC C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.08  E-value=0.07  Score=31.47  Aligned_cols=44  Identities=16%  Similarity=0.265  Sum_probs=36.7

Q ss_pred             CCCCC-CCHHHHHHHHhCCCccHHHHHhCChhHHhh----chHhHHHHHH
Q 036464            3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ   47 (226)
Q Consensus         3 ~~~l~-l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----~~~~a~~l~~   47 (226)
                      |+..| +++.+.++|.+. |.|++++..++..||.+    +...|..++.
T Consensus         4 L~~I~gVG~~~a~~L~~~-F~s~~~i~~As~eeL~~v~GIg~~~A~~I~~   52 (56)
T d1kfta_           4 LETIEGVGPKRRQMLLKY-MGGLQGLRNASVEEIAKVPGISQGLAEKIFW   52 (56)
T ss_dssp             GGGCTTCSSSHHHHHHHH-HSCHHHHHHCCHHHHTTSSSTTSHHHHHHHH
T ss_pred             cccCCCccHHHHHHHHHH-hCCHHHHHHhhHHHHHhcCCCCHHHHHHHHH
Confidence            56778 999999999999 99999999999999988    4455655544

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=90.47  E-value=0.074  Score=42.67  Aligned_cols=21  Identities=33%  Similarity=0.428  Sum_probs=18.8

Q ss_pred             CCCeeEEEecCCCCChHHHHH
Q 036464           72 GCREVTEIGGVPGIGKTQLGI   92 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~   92 (226)
                      +.|++.++.|-+|+|||||..
T Consensus        12 ~~~~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHHC
T ss_pred             CCCCEEEEEccCCCCccccee
Confidence            468999999999999999884

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.33  E-value=0.075  Score=41.24  Aligned_cols=23  Identities=17%  Similarity=0.163  Sum_probs=19.7

Q ss_pred             eEEEecCCCCChHHHHHHHHHHh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      -+.|.|.||+|||+++-.+...-
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            37899999999999998887543

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.96  E-value=0.084  Score=42.50  Aligned_cols=21  Identities=38%  Similarity=0.457  Sum_probs=18.8

Q ss_pred             CCCeeEEEecCCCCChHHHHH
Q 036464           72 GCREVTEIGGVPGIGKTQLGI   92 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~   92 (226)
                      +.|++.++.|-+|+|||||..
T Consensus        12 ~~gd~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          12 KQGDVTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             TTCCEEEEECCTTSSHHHHHC
T ss_pred             CCCCEEEEEccCCCCccccee
Confidence            468899999999999999984

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=89.90  E-value=0.076  Score=42.73  Aligned_cols=21  Identities=33%  Similarity=0.452  Sum_probs=18.6

Q ss_pred             CCeeEEEecCCCCChHHHHHH
Q 036464           73 CREVTEIGGVPGIGKTQLGIQ   93 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~   93 (226)
                      .|++.++.|-+|+|||||...
T Consensus        13 ~~~valffGLSGTGKTTLs~~   33 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLSTD   33 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHTCB
T ss_pred             CCCEEEEEccCCCCccccccC
Confidence            578999999999999998753

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=89.61  E-value=2.1  Score=31.22  Aligned_cols=20  Identities=25%  Similarity=0.180  Sum_probs=17.7

Q ss_pred             EEEecCCCCChHHHHHHHHH
Q 036464           77 TEIGGVPGIGKTQLGIQLAV   96 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~   96 (226)
                      +.+.|..++|||||+-.+..
T Consensus         6 i~iiGHvd~GKSTL~~~l~~   25 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITK   25 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            78999999999999887764

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=89.50  E-value=0.12  Score=41.88  Aligned_cols=33  Identities=24%  Similarity=0.331  Sum_probs=27.3

Q ss_pred             EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      +.|-|+-|+||||++..++....      ..+.+++|+.
T Consensus         8 I~IEG~iGsGKSTl~~~L~~~l~------~~g~~v~~~~   40 (331)
T d1osna_           8 IYLDGAYGIGKTTAAEEFLHHFA------ITPNRILLIG   40 (331)
T ss_dssp             EEEEESSSSCTTHHHHHHHHTTT------TSGGGEEEEC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHh------hcCCceEEEe
Confidence            78999999999999998888765      3456788875

>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase VlgB
species: Flatworm (Dugesia japonica) [TaxId: 6161]

Probab=88.72  E-value=0.029  Score=43.29  Aligned_cols=52  Identities=23%  Similarity=0.299  Sum_probs=34.9

Q ss_pred             CCCCCCCHHHHHHHHhCCCccHHHHHhCChhHHhhchHhHHHHHHHhhcccCceecCchhHHHhhCCCCCCCeeEEEecC
Q 036464            3 VSKLPISATQRGKLISAGYTSLSSICSASSSDISRGTQTAWDMLQEEQESLARITTSCADLDNILGGGIGCREVTEIGGV   82 (226)
Q Consensus         3 ~~~l~l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~~~~~a~~l~~~~~~~~~~i~Tg~~~LD~~l~GGi~~G~i~~i~G~   82 (226)
                      .++|+|++.+++.|.+.||+....+-..                               .+-.++.     |+-+.+.++
T Consensus        23 F~~l~l~~~l~~~L~~~g~~~pt~iQ~~-------------------------------~ip~il~-----g~dvvi~a~   66 (238)
T d1wrba1          23 FDELKLDPTIRNNILLASYQRPTPIQKN-------------------------------AIPAILE-----HRDIMACAQ   66 (238)
T ss_dssp             SGGGSCCCSTTTTTTTTTCCSCCHHHHH-------------------------------HHHHHHT-----TCCEEEECC
T ss_pred             HHHCCCCHHHHHHHHHCCCCCCCHHHHH-------------------------------HhhhhhC-----CCCEEEECC
Confidence            4567788888888888888764332211                               1122332     456899999


Q ss_pred             CCCChHHH
Q 036464           83 PGIGKTQL   90 (226)
Q Consensus        83 ~GsGKT~l   90 (226)
                      +|+|||.-
T Consensus        67 TGsGKTla   74 (238)
T d1wrba1          67 TGSGKTAA   74 (238)
T ss_dssp             TTSSHHHH
T ss_pred             CCCCccee
Confidence            99999963

>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]}

class: All alpha proteins
fold: SAM domain-like
superfamily: RuvA domain 2-like
family: Hef domain-like
domain: DNA repair endonuclease XPF
species: Aeropyrum pernix [TaxId: 56636]

Probab=88.65  E-value=0.29  Score=29.93  Aligned_cols=44  Identities=23%  Similarity=0.468  Sum_probs=35.8

Q ss_pred             CCCCC-CCHHHHHHHHhCCCccHHHHHhCChhHHhh----chHhHHHHHH
Q 036464            3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQ   47 (226)
Q Consensus         3 ~~~l~-l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----~~~~a~~l~~   47 (226)
                      |+.+| +++.+..+|.+. |.|+.++..+++.+|.+    +...|.++.+
T Consensus        15 L~~IpgIG~~~a~~L~~~-F~s~~~l~~As~eeL~~v~GIG~~~A~~I~~   63 (70)
T d2bgwa1          15 LQSFPGIGRRTAERILER-FGSLERFFTASKAEISKVEGIGEKRAEEIKK   63 (70)
T ss_dssp             HHTSTTCCHHHHHHHHHH-HSSHHHHTTCCHHHHHHSTTCCHHHHHHHHH
T ss_pred             HcCCCCcCHHHHHHHHHH-hCCHHHHHHcCHHHHHcCCCCCHHHHHHHHH
Confidence            45678 999999999998 99999999999999998    4455555544

>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: SAM domain-like
superfamily: RuvA domain 2-like
family: Hef domain-like
domain: ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=88.03  E-value=0.46  Score=28.81  Aligned_cols=45  Identities=27%  Similarity=0.461  Sum_probs=37.0

Q ss_pred             CCCCC-CCHHHHHHHHhCCCccHHHHHhCChhHHhh----chHhHHHHHHH
Q 036464            3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR----GTQTAWDMLQE   48 (226)
Q Consensus         3 ~~~l~-l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~----~~~~a~~l~~~   48 (226)
                      |+.+| +++.+..+|.+. |.|++.+..++..||.+    +...|..+.+.
T Consensus        12 L~~I~gIG~~~a~~L~~~-f~s~~~i~~As~eeL~~i~GIG~~~A~~I~~~   61 (68)
T d1x2ia1          12 VEGLPHVSATLARRLLKH-FGSVERVFTASVAELMKVEGIGEKIAKEIRRV   61 (68)
T ss_dssp             HTTSTTCCHHHHHHHHHH-HCSHHHHHHCCHHHHTTSTTCCHHHHHHHHHH
T ss_pred             HcCCCCcCHHHHHHHHHH-cCCHHHHHHhHHHHHHhCCCcCHHHHHHHHHH
Confidence            45678 999999999998 99999999999999998    45556555443

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.99  E-value=0.19  Score=37.98  Aligned_cols=23  Identities=22%  Similarity=0.174  Sum_probs=19.4

Q ss_pred             eEEEecCCCCChHHHHHHHHHHh
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ++.|.|.+++|||||.-.+....
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhhc
Confidence            48899999999999998776543

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=87.98  E-value=0.23  Score=40.10  Aligned_cols=33  Identities=30%  Similarity=0.452  Sum_probs=25.9

Q ss_pred             eEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           76 VTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        76 i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      .+.|-|+-|+||||++..++....       .+..++++.
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~-------~~~~v~~~~   40 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAAS-------GGSPTLYFP   40 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGG-------CSSCEEEEC
T ss_pred             EEEEECCccCCHHHHHHHHHHHhc-------cCCCeEEEe
Confidence            477899999999999988887753       345677764

>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: RuvA domain 2-like
family: Hef domain-like
domain: DNA repair endonuclease XPF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.06  E-value=0.41  Score=28.45  Aligned_cols=44  Identities=16%  Similarity=0.377  Sum_probs=35.1

Q ss_pred             CCCCC-CCHHHHHHHHhCCCccHHHHHhCChhHHhh--c-hHhHHHHHH
Q 036464            3 VSKLP-ISATQRGKLISAGYTSLSSICSASSSDISR--G-TQTAWDMLQ   47 (226)
Q Consensus         3 ~~~l~-l~~~~~~~l~~~g~~t~~~~~~~~~~~l~~--~-~~~a~~l~~   47 (226)
                      |+++| +++....+|. +.|.|+.++..++..||.+  + ...|..+++
T Consensus         5 L~~iPGIg~~~~~~Ll-~~f~Si~~l~~As~~eL~~v~G~~~~A~~i~~   52 (62)
T d2a1ja1           5 LLKMPGVNAKNCRSLM-HHVKNIAELAALSQDELTSILGNAANAKQLYD   52 (62)
T ss_dssp             HHTSTTCCHHHHHHHH-HHCSSHHHHHTCCHHHHHHHHSCHHHHHHHHH
T ss_pred             HhcCCCCCHHHHHHHH-HHhccHHHHHhCCHHHHHHCcCcHHHHHHHHH
Confidence            56788 9999999998 5899999999999999988  3 334544444

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.95  E-value=0.28  Score=40.47  Aligned_cols=20  Identities=25%  Similarity=0.300  Sum_probs=18.1

Q ss_pred             EEEecCCCCChHHHHHHHHH
Q 036464           77 TEIGGVPGIGKTQLGIQLAV   96 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~   96 (226)
                      +.|+|.||+|||+|.-.+..
T Consensus        59 Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          59 VAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             EEEEECTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            89999999999999988763

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.51  E-value=0.68  Score=31.56  Aligned_cols=28  Identities=18%  Similarity=0.137  Sum_probs=24.0

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHhc
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNVQ   99 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~~   99 (226)
                      +.|-.+.+.|-+|+||++++..+.....
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~   31 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFL   31 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            4577889999999999999988877765

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=82.84  E-value=0.32  Score=39.11  Aligned_cols=33  Identities=24%  Similarity=0.232  Sum_probs=23.1

Q ss_pred             eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           75 EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        75 ~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      -.+.|-|+-|+||||++..++...        ...+++|+.
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~l--------~~~~v~~~~   37 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVALG--------SRDDIVYVP   37 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC------------CCEEEEC
T ss_pred             eEEEEECCcCCCHHHHHHHHHHHh--------CCCCeEEec
Confidence            347899999999999998776543        234577764

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=82.25  E-value=0.48  Score=41.87  Aligned_cols=26  Identities=23%  Similarity=0.303  Sum_probs=21.9

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ..+.++|.|++|+|||.-+..+....
T Consensus        85 ~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          85 ENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            56789999999999999888776544

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=81.66  E-value=0.52  Score=41.85  Aligned_cols=27  Identities=22%  Similarity=0.206  Sum_probs=22.2

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ...+.++|.|++|+|||.-+..+...+
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence            357899999999999999887775544

>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=81.14  E-value=0.52  Score=38.62  Aligned_cols=30  Identities=20%  Similarity=0.161  Sum_probs=24.4

Q ss_pred             CCCCeeEEEecCCCCChHHHHHHHHHHhcc
Q 036464           71 IGCREVTEIGGVPGIGKTQLGIQLAVNVQI  100 (226)
Q Consensus        71 i~~G~i~~i~G~~GsGKT~l~~~la~~~~l  100 (226)
                      .|....++|.+.+|||||..+.+-.....+
T Consensus        13 ~p~~g~~lv~A~AGsGKT~~l~~r~~~ll~   42 (485)
T d1w36b1          13 LPLQGERLIEASAGTGKTFTIAALYLRLLL   42 (485)
T ss_dssp             CCCSSCEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCCCCCeEEEEcCchHHHHHHHHHHHHHHh
Confidence            677788999999999999988776665543

>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: SAM domain-like
superfamily: PsbU/PolX domain-like
family: DNA polymerase beta-like, second domain
domain: Terminal deoxynucleotidyl transferase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.70  E-value=0.83  Score=27.01  Aligned_cols=26  Identities=23%  Similarity=0.346  Sum_probs=22.7

Q ss_pred             CCCCHHHHHHHHhCCCccHHHHHhCC
Q 036464            6 LPISATQRGKLISAGYTSLSSICSAS   31 (226)
Q Consensus         6 l~l~~~~~~~l~~~g~~t~~~~~~~~   31 (226)
                      .+++|...++|.+.|++|++|+-...
T Consensus        14 ~GvGp~~A~~l~~~Gi~ti~dL~~~~   39 (60)
T d1jmsa3          14 FGVGLKTAEKWFRMGFRTLSKIQSDK   39 (60)
T ss_dssp             TTCCHHHHHHHHHTTCCSHHHHHHCS
T ss_pred             ccccHHHHHHHHHhCCCCHHHHHhcC
Confidence            46899999999999999999998543

>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=80.49  E-value=2.2  Score=35.06  Aligned_cols=72  Identities=15%  Similarity=0.171  Sum_probs=47.0

Q ss_pred             cCceecCch--hHHHhhCCCCCCC-eeEEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEeccccCchHHHHHHH
Q 036464           53 LARITTSCA--DLDNILGGGIGCR-EVTEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIGKCLGFYTEQSAVIN  129 (226)
Q Consensus        53 ~~~i~Tg~~--~LD~~l~GGi~~G-~i~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~~e~~~~~~~~~~l~  129 (226)
                      .+.-|+|-.  .+.+++. |+..| .-..|.|-+|||||.++-.++.+.         +.+++.|..   +..+...+.+
T Consensus         8 ~~~~p~gDQP~aI~~l~~-~l~~g~~~q~l~GltGS~ka~~iA~l~~~~---------~rp~LVVt~---n~~~A~qL~~   74 (413)
T d1t5la1           8 APYEPQGDQPQAIAKLVD-GLRRGVKHQTLLGATGTGKTFTISNVIAQV---------NKPTLVIAH---NKTLAGQLYS   74 (413)
T ss_dssp             CSSCCCTTHHHHHHHHHH-HHHHTCSEEEEEECTTSCHHHHHHHHHHHH---------TCCEEEECS---SHHHHHHHHH
T ss_pred             cCCCCCCCCHHHHHHHHH-HHhcCCCcEEEeCCCCcHHHHHHHHHHHHh---------CCCEEEEeC---CHHHHHHHHH
Confidence            345667753  3555554 45555 345688999999999998888765         346888863   2333334567


Q ss_pred             HHHHHHhh
Q 036464          130 YLDKFVSE  137 (226)
Q Consensus       130 ~l~~~l~~  137 (226)
                      ++..++.+
T Consensus        75 dL~~~l~~   82 (413)
T d1t5la1          75 ELKEFFPH   82 (413)
T ss_dssp             HHHHHCTT
T ss_pred             HHHHHcCC
Confidence            77777754

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=80.48  E-value=0.6  Score=41.39  Aligned_cols=26  Identities=19%  Similarity=0.155  Sum_probs=22.1

Q ss_pred             CCeeEEEecCCCCChHHHHHHHHHHh
Q 036464           73 CREVTEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        73 ~G~i~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      ..+.++|.|++|+|||.-+..+....
T Consensus        90 ~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          90 EDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            56789999999999999888776655

>d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: SAM domain-like
superfamily: PsbU/PolX domain-like
family: DNA polymerase beta-like, second domain
domain: DNA polymerase lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.48  E-value=0.79  Score=26.82  Aligned_cols=24  Identities=21%  Similarity=0.224  Sum_probs=21.9

Q ss_pred             CCCCHHHHHHHHhCCCccHHHHHh
Q 036464            6 LPISATQRGKLISAGYTSLSSICS   29 (226)
Q Consensus         6 l~l~~~~~~~l~~~g~~t~~~~~~   29 (226)
                      .+++|...++|.+.|++|++|+-.
T Consensus        14 ~GvGp~~A~~l~~~Gi~ti~dLr~   37 (57)
T d2bcqa2          14 WGAGTKTAQMWYQQGFRSLEDIRS   37 (57)
T ss_dssp             TTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred             ccccHHHHHHHHHhCCCCHHHHHh
Confidence            468999999999999999999875

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.44  E-value=1.4  Score=35.33  Aligned_cols=22  Identities=18%  Similarity=0.099  Sum_probs=19.4

Q ss_pred             EEEecCCCCChHHHHHHHHHHh
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNV   98 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~   98 (226)
                      +.|.|..++|||||+-.+....
T Consensus        20 I~iiGhvd~GKTTL~d~Ll~~~   41 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLVQRA   41 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHC
Confidence            8999999999999998887544

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=80.32  E-value=0.57  Score=36.67  Aligned_cols=26  Identities=27%  Similarity=0.391  Sum_probs=20.8

Q ss_pred             CCCeeEEEecCCCCChHHHHHHHHHH
Q 036464           72 GCREVTEIGGVPGIGKTQLGIQLAVN   97 (226)
Q Consensus        72 ~~G~i~~i~G~~GsGKT~l~~~la~~   97 (226)
                      ..+--+.|+|-|.+|||||.-.+...
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCC
Confidence            33444889999999999998888754

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.28  E-value=0.44  Score=37.24  Aligned_cols=23  Identities=35%  Similarity=0.235  Sum_probs=20.1

Q ss_pred             CeeEEEecCCCCChHHHHHHHHH
Q 036464           74 REVTEIGGVPGIGKTQLGIQLAV   96 (226)
Q Consensus        74 G~i~~i~G~~GsGKT~l~~~la~   96 (226)
                      =.++.|+|+.++|||+|+-+++.
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~   54 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAG   54 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTT
T ss_pred             EEEEEEECCCCCCHHHHHHHHcC
Confidence            35899999999999999988764

>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: DNA helicase UvsW
domain: DNA helicase UvsW
species: Bacteriophage T4 [TaxId: 10665]

Probab=80.03  E-value=0.59  Score=36.41  Aligned_cols=34  Identities=18%  Similarity=0.114  Sum_probs=25.4

Q ss_pred             EEEecCCCCChHHHHHHHHHHhccccccCCCCCeEEEEe
Q 036464           77 TEIGGVPGIGKTQLGIQLAVNVQIPVEFGGLGGKAIYIG  115 (226)
Q Consensus        77 ~~i~G~~GsGKT~l~~~la~~~~lp~~~~~~~~~vlyi~  115 (226)
                      ..+.-|+|+|||.++..++.....     ..+.+++++-
T Consensus       131 ~il~~pTGsGKT~i~~~i~~~~~~-----~~~~k~Liiv  164 (282)
T d1rifa_         131 RILNLPTSAGRSLIQALLARYYLE-----NYEGKILIIV  164 (282)
T ss_dssp             EEECCCTTSCHHHHHHHHHHHHHH-----HCSSEEEEEC
T ss_pred             ceeEEEcccCccHHHHHHHHHhhh-----cccceEEEEE
Confidence            577789999999988877765531     2456888886