Citrus Sinensis ID: 036589

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170------
Protein Sequence
MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVTG
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHccHHHHcccHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mnkakptspfRLASLLHLQKHPKLALqlfknpnpnandteapplkpfrynllHYDLIITKLGRAKMFDEMQQILHQLKHdtrvipeeiIFCNVISFYGRARLLEHALQVfdempsfnvqRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKiimndsqvrvtg
Flexible Loop (DISEMBL)
mnkakptspfRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNlkiimndsqvrvtg
Low Complexity Region (SEG)
MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVTG
Disordered region (IsUnstruct)
**************LLHL*****LAL******************KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMN********
Disordered Region (DISOPRED)
******T***RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT*
Disordered Region (DISEMBL)
MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVTG
Disordered Region (DISPRO)
****KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQ*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVTG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	176	2.2.26 [Sep-21-2011]
Q9MAG8	471	Putative pentatricopeptid	yes	no	0.823	0.307	0.563	2e-39
Q9LG23	398	Pentatricopeptide repeat-	no	no	0.704	0.311	0.335	2e-12
Q9LK57	394	Pentatricopeptide repeat-	no	no	0.75	0.335	0.314	2e-12
Q9LQQ1	459	Pentatricopeptide repeat-	no	no	0.625	0.239	0.333	8e-12
Q9FFE3	535	Pentatricopeptide repeat-	no	no	0.715	0.235	0.319	7e-11
Q9M065	412	Pentatricopeptide repeat-	no	no	0.698	0.298	0.287	2e-10
Q9LUD6	405	Pentatricopeptide repeat-	no	no	0.630	0.274	0.309	7e-10
Q9ZU67	418	Pentatricopeptide repeat-	no	no	0.744	0.313	0.297	1e-09
Q9LK58	551	Pentatricopeptide repeat-	no	no	0.511	0.163	0.387	2e-09
Q9CA58	763	Putative pentatricopeptid	no	no	0.789	0.182	0.229	4e-08

>sp|Q9MAG8|PPR79_ARATH Putative pentatricopeptide repeat-containing protein At1g53330 OS=Arabidopsis thaliana GN=At1g53330 PE=3 SV=1

 Score =  161 bits (408), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 84/149 (56%), Positives = 111/149 (74%), Gaps = 4/149 (2%)

Query: 1   MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK 60
           M+  K  S FRLASLL  +  P  A++LF+NP+P + +    P +PFRY+LL YD+IITK
Sbjct: 1   MSAVKSVSSFRLASLLRRENDPSAAMKLFRNPDPESTN----PKRPFRYSLLCYDIIITK 56

Query: 61  LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
           LG +KMFDE+ Q+L  LK DTR++P EIIFCNVI+F+GR +L   AL +FDEMP +  QR
Sbjct: 57  LGGSKMFDELDQVLLHLKTDTRIVPTEIIFCNVINFFGRGKLPSRALHMFDEMPQYRCQR 116

Query: 121 TVKSLNTLLNALLTCGKLDRMKELFISFN 149
           TVKSLN+LL+ALL CG+L++MKE   S +
Sbjct: 117 TVKSLNSLLSALLKCGELEKMKERLSSID 145

Involved during embryo development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LG23|PPR82_ARATH Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidopsis thaliana GN=At1g55890 PE=1 SV=1

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 76/134 (56%), Gaps = 10/134 (7%)

Query: 12  LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQ 71
           L SL++ +++PK  ++ FK         +A   + FR N+  YD  + +L  AK    ++
Sbjct: 44  LTSLVNGERNPKRIVEKFK---------KACESERFRTNIAVYDRTVRRLVAAKRLHYVE 94

Query: 72  QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131
           +IL + K   R + +E     +IS YG+A + E+A +VF+EMP+ + +R+V S N LL+A
Sbjct: 95  EILEEQKK-YRDMSKEGFAARIISLYGKAGMFENAQKVFEEMPNRDCKRSVLSFNALLSA 153

Query: 132 LLTCGKLDRMKELF 145
                K D ++ELF
Sbjct: 154 YRLSKKFDVVEELF 167

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK57|PP226_ARATH Pentatricopeptide repeat-containing protein At3g13160, mitochondrial OS=Arabidopsis thaliana GN=At3g13160 PE=1 SV=1

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/143 (31%), Positives = 77/143 (53%), Gaps = 11/143 (7%)

Query: 4   AKPTSPF-RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG 62
           A P+ P   L +L++ ++ PK   + FK         +A   + FR N+  Y+  + +L 
Sbjct: 32  ATPSPPKPSLITLVNDERDPKFITEKFK---------KACQAEWFRKNIAVYERTVRRLA 82

Query: 63  RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV 122
            AK F+ +++IL + ++    + +E     +I+ YGR  + E+A +VFDEMP  N +RT 
Sbjct: 83  AAKKFEWVEEILEE-QNKYPNMSKEGFVARIINLYGRVGMFENAQKVFDEMPERNCKRTA 141

Query: 123 KSLNTLLNALLTCGKLDRMKELF 145
            S N LLNA +   K D ++ +F
Sbjct: 142 LSFNALLNACVNSKKFDLVEGIF 164

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQQ1|PPR20_ARATH Pentatricopeptide repeat-containing protein At1g07740, mitochondrial OS=Arabidopsis thaliana GN=At1g07740 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 41/123 (33%), Positives = 69/123 (56%), Gaps = 13/123 (10%)

Query: 47  FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
           FR++   Y  +I KL +++ FD + QIL  +++   V   E +F  +I  YG+A  ++ A
Sbjct: 77  FRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRY-RNVRCRESLFMGLIQHYGKAGSVDKA 135

Query: 107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF------------ISFNLKAIA 154
           + VF ++ SF+  RT++SLNTL+N L+  G+L++ K  F            +SFN+    
Sbjct: 136 IDVFHKITSFDCVRTIQSLNTLINVLVDNGELEKAKSFFDGAKDMRLRPNSVSFNILIKG 195

Query: 155 VLD 157
            LD
Sbjct: 196 FLD 198

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 15/141 (10%)

Query: 9   PFRLASLLHLQKHPKLALQLF---KNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAK 65
           P RL S++  Q++  LALQ+F      +P            F +N   Y  I+ KL RA+
Sbjct: 49  PKRLVSMITQQQNIDLALQIFLYAGKSHPG-----------FTHNYDTYHSILFKLSRAR 97

Query: 66  MFDEMQQILHQLKHDTRVIP-EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS 124
            FD ++ ++  L++    I   E +F +++  YG A   E ++++F  +P F V+R+V+S
Sbjct: 98  AFDPVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRS 157

Query: 125 LNTLLNALLTCGKLDRMKELF 145
           LNTLLN L+   + D +  +F
Sbjct: 158 LNTLLNVLIQNQRFDLVHAMF 178

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M065|PP352_ARATH Pentatricopeptide repeat-containing protein At4g36680, mitochondrial OS=Arabidopsis thaliana GN=At4g36680 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/132 (28%), Positives = 69/132 (52%), Gaps = 9/132 (6%)

Query: 14  SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
           S L  +  P  AL+++     N +D  A P+   RY     +L + +L + + F +++ +
Sbjct: 38  STLRKEHDPDKALKIY----ANVSDHSASPVSS-RYAQ---ELTVRRLAKCRRFSDIETL 89

Query: 74  LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
           +   K+D + I EE  +  +I  YG+A +  HA++ F++M  +   R+  S N LLNA L
Sbjct: 90  IESHKNDPK-IKEEPFYSTLIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACL 148

Query: 134 TCGKLDRMKELF 145
                D++ +LF
Sbjct: 149 HSKNFDKVPQLF 160

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUD6|PP230_ARATH Pentatricopeptide repeat-containing protein At3g14580, mitochondrial OS=Arabidopsis thaliana GN=At3g14580 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/113 (30%), Positives = 62/113 (54%), Gaps = 2/113 (1%)

Query: 54  YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR-ARLLEHALQVFDE 112
           Y L+I K G+AKM+DE+++++  +K + R    E  F N++  YG  A  +  A+++   
Sbjct: 98  YALMINKFGQAKMYDEIEEVMRTIKLEKRCRFSEEFFYNLMRIYGNLAGRINRAIEILFG 157

Query: 113 MPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI 165
           MP F    + KS N +LN L++    D + ++F+S     + + D  C N+ I
Sbjct: 158 MPDFGCWPSSKSFNFILNLLVSAKLFDEIHKIFVSAPKLGVEI-DACCLNILI 209

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU67|PP162_ARATH Pentatricopeptide repeat-containing protein At2g18520, mitochondrial OS=Arabidopsis thaliana GN=At2g18520 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 76/148 (51%), Gaps = 17/148 (11%)

Query: 1   MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK 60
           M+KAK        S L   + P  AL ++K+ + N+      PL   RY +   +L + +
Sbjct: 33  MSKAK--------SKLRKVQDPDKALAIYKSVSNNSTS----PLSS-RYAM---ELTVQR 76

Query: 61  LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
           L +++ F +++ ++   K++ + I  E     +I  YGRA + +HA+++F+EM      R
Sbjct: 77  LAKSQRFSDIEALIESHKNNPK-IKTETFLSTLIRSYGRASMFDHAMKMFEEMDKLGTPR 135

Query: 121 TVKSLNTLLNALLTCGKLDRMKELFISF 148
           TV S N LL A L     +R+ +LF  F
Sbjct: 136 TVVSFNALLAACLHSDLFERVPQLFDEF 163

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK58|PP225_ARATH Pentatricopeptide repeat-containing protein At3g13150 OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/93 (38%), Positives = 51/93 (54%), Gaps = 3/93 (3%)

Query: 54  YDLIITKLGRAKMFDEMQQIL-HQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDE 112
           Y   I +L  AK F  + ++L +Q K D   I  E     ++  YG + + EHA ++FDE
Sbjct: 90  YSAFIRRLREAKKFSTIDEVLQYQKKFDD--IKSEDFVIRIMLLYGYSGMAEHAHKLFDE 147

Query: 113 MPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
           MP  N +RTVKS N LL+A +   KLD   + F
Sbjct: 148 MPELNCERTVKSFNALLSAYVNSKKLDEAMKTF 180

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1

 Score = 57.8 bits (138), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/148 (22%), Positives = 71/148 (47%), Gaps = 9/148 (6%)

Query: 6   PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAK 65
           P  P  + +++  QK P  AL++F +               F++ L  Y  +I KLG   
Sbjct: 4   PLLPKHVTAVIKCQKDPMKALEMFNSMRKEVG---------FKHTLSTYRSVIEKLGYYG 54

Query: 66  MFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL 125
            F+ M+++L  ++ +      E ++   +  YGR   ++ A+ VF+ M  ++ + TV S 
Sbjct: 55  KFEAMEEVLVDMRENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSY 114

Query: 126 NTLLNALLTCGKLDRMKELFISFNLKAI 153
           N +++ L+  G  D+  ++++    + I
Sbjct: 115 NAIMSVLVDSGYFDQAHKVYMRMRDRGI 142

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
224117008	461	predicted protein [Populus trichocarpa]	0.892	0.340	0.593	9e-48
224161575	230	predicted protein [Populus trichocarpa]	0.892	0.682	0.593	1e-47
449456681	527	PREDICTED: putative pentatricopeptide re	0.823	0.275	0.610	1e-45
255576901	610	pentatricopeptide repeat-containing prot	0.869	0.250	0.528	3e-41
225461712	464	PREDICTED: putative pentatricopeptide re	0.75	0.284	0.642	6e-39
147840993	418	hypothetical protein VITISV_037241 [Viti	0.75	0.315	0.642	7e-39
302142881	146	unnamed protein product [Vitis vinifera]	0.710	0.856	0.609	7e-39
297847728	472	pentatricopeptide repeat-containing prot	0.823	0.307	0.563	4e-38
15219274	471	pentatricopeptide repeat-containing prot	0.823	0.307	0.563	7e-38
357516331	303	hypothetical protein MTR_8g058400, parti	0.727	0.422	0.525	8e-30

>gi|224117008|ref|XP_002317451.1| predicted protein [Populus trichocarpa] gi|222860516|gb|EEE98063.1| predicted protein [Populus trichocarpa]

 Score =  194 bits (494), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 98/165 (59%), Positives = 122/165 (73%), Gaps = 8/165 (4%)

Query: 1   MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK 60
           MN ++P +PFRLASLL LQK PKLALQLFKNPNP        P KPFRY+LL YDLIITK
Sbjct: 1   MNPSRPITPFRLASLLRLQKDPKLALQLFKNPNPKT------PSKPFRYSLLSYDLIITK 54

Query: 61  LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
           LGRAKMF+EMQ+IL QLK +T   P+E +FC++I+FYGRARL E+AL++  E+PSF VQR
Sbjct: 55  LGRAKMFNEMQEILAQLKEETLFTPKEALFCDIINFYGRARLPENALKLLVELPSFRVQR 114

Query: 121 TVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI 165
           TVKS N+LL+  L C   D+M+ELF+   ++ +   D    NL I
Sbjct: 115 TVKSYNSLLSVFLMCKDFDKMRELFVG--IEKLGKADACTYNLLI 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224161575|ref|XP_002338346.1| predicted protein [Populus trichocarpa] gi|222871947|gb|EEF09078.1| predicted protein [Populus trichocarpa]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 98/165 (59%), Positives = 122/165 (73%), Gaps = 8/165 (4%)

Query: 1   MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK 60
           MN ++P +PFRLASLL LQK PKLALQLFKNPNP        P KPFRY+LL YDLIITK
Sbjct: 1   MNPSRPITPFRLASLLRLQKDPKLALQLFKNPNPKT------PSKPFRYSLLSYDLIITK 54

Query: 61  LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
           LGRAKMF+EMQ+IL QLK +T   P+E +FC++I+FYGRARL E+AL++  E+PSF VQR
Sbjct: 55  LGRAKMFNEMQEILAQLKEETLFTPKEALFCDIINFYGRARLPENALKLLVELPSFRVQR 114

Query: 121 TVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI 165
           TVKS N+LL+  L C   D+M+ELF+   ++ +   D    NL I
Sbjct: 115 TVKSYNSLLSVFLMCKDFDKMRELFVG--IEKLGKADACTYNLLI 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456681|ref|XP_004146077.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330-like [Cucumis sativus]

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 91/149 (61%), Positives = 116/149 (77%), Gaps = 4/149 (2%)

Query: 1   MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK 60
           M   KP SPFRL+SLL LQK P LALQLF NPNP++++    P KPFRY+LL YDLII+K
Sbjct: 69  MKTQKPISPFRLSSLLRLQKDPTLALQLFLNPNPSSSE----PPKPFRYSLLSYDLIISK 124

Query: 61  LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
           LGRAKMFDEM++IL QLK +TR  P E+IFCNVI+FYGRA L + A QVF+ +PSF  +R
Sbjct: 125 LGRAKMFDEMEEILQQLKQETRFAPHEVIFCNVIAFYGRAHLPDRAFQVFERIPSFRCKR 184

Query: 121 TVKSLNTLLNALLTCGKLDRMKELFISFN 149
           TVKS+N+LL ALL   +L++M ++F+  +
Sbjct: 185 TVKSVNSLLAALLKNRQLEKMTQVFVDIS 213

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576901|ref|XP_002529336.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223531207|gb|EEF33053.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  172 bits (437), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 92/174 (52%), Positives = 121/174 (69%), Gaps = 21/174 (12%)

Query: 3   KAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG 62
           K K  S FRLASLL LQ+ PKLAL LF++PN N N       KPFRY+LL YDL+ITKLG
Sbjct: 5   KPKRISSFRLASLLRLQEDPKLALHLFQHPNSNPNP------KPFRYSLLCYDLMITKLG 58

Query: 63  RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV 122
           RAKMF EM+QIL Q K  TR++ +E +FCN+I+FYGRA L ++AL++FDEMP +  QRT+
Sbjct: 59  RAKMFHEMEQILLQFKTQTRLVAKEPLFCNIITFYGRAGLPQNALKMFDEMPLYRCQRTI 118

Query: 123 KSLNTLLNALLTCGKLDRMKELFI-----------SFNLKAIAVLDGLCSNLKI 165
           KS NTLLN L+ C + D M+E F+           +FN+    ++ GLCS+ ++
Sbjct: 119 KSYNTLLNVLMICKEFDVMREHFVNIKRHVKPDGCTFNI----MIRGLCSDGRV 168

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461712|ref|XP_002283237.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g53330-like [Vitis vinifera]

 Score =  165 bits (418), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 90/140 (64%), Positives = 107/140 (76%), Gaps = 8/140 (5%)

Query: 1   MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK 60
           MN  KP SPFRL+SLL LQ  PKLALQLF+NPNP+         KPFRY  L YDLIITK
Sbjct: 1   MNPPKPISPFRLSSLLRLQNDPKLALQLFQNPNPDP--------KPFRYTHLSYDLIITK 52

Query: 61  LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
           LGR++MF EM+QIL QL+ +TR  P+EIIFCNVISFYGRARL + A+Q F+ +P F  QR
Sbjct: 53  LGRSRMFHEMEQILSQLRRETRFSPKEIIFCNVISFYGRARLPDRAIQTFESIPEFRCQR 112

Query: 121 TVKSLNTLLNALLTCGKLDR 140
           TVKSLN+LLNALL C + ++
Sbjct: 113 TVKSLNSLLNALLKCKEFEK 132

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147840993|emb|CAN64120.1| hypothetical protein VITISV_037241 [Vitis vinifera]

 Score =  165 bits (417), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 90/140 (64%), Positives = 107/140 (76%), Gaps = 8/140 (5%)

Query: 1   MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK 60
           MN  KP SPFRL+SLL LQ  PKLALQLF+NPNP+         KPFRY  L YDLIITK
Sbjct: 1   MNPPKPISPFRLSSLLRLQNGPKLALQLFQNPNPDP--------KPFRYTHLSYDLIITK 52

Query: 61  LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
           LGR++MF EM+QIL QL+ +TR  P+EIIFCNVISFYGRARL + A+Q F+ +P F  QR
Sbjct: 53  LGRSRMFHEMEQILSQLRRETRFSPKEIIFCNVISFYGRARLPDRAIQTFESIPEFRCQR 112

Query: 121 TVKSLNTLLNALLTCGKLDR 140
           TVKSLN+LLNALL C + ++
Sbjct: 113 TVKSLNSLLNALLNCKEFEK 132

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142881|emb|CBI20176.3| unnamed protein product [Vitis vinifera]

 Score =  165 bits (417), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 81/133 (60%), Positives = 96/133 (72%), Gaps = 8/133 (6%)

Query: 1   MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK 60
           MN  KP SPFRL+SLL LQ  PKLALQLF+NPNP+         KPFRY  L YDLIITK
Sbjct: 1   MNPPKPISPFRLSSLLRLQNDPKLALQLFQNPNPDP--------KPFRYTHLSYDLIITK 52

Query: 61  LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
           LGR++MF EM+QIL QL+ +TR  P+EIIFCNVISFYGRARL + A+Q F+ +P F  QR
Sbjct: 53  LGRSRMFHEMEQILSQLRRETRFSPKEIIFCNVISFYGRARLPDRAIQTFESIPEFRCQR 112

Query: 121 TVKSLNTLLNALL 133
           T  +   L+NA  
Sbjct: 113 TGTTWTLLMNAFW 125

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847728|ref|XP_002891745.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297337587|gb|EFH68004.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  162 bits (411), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 84/149 (56%), Positives = 110/149 (73%), Gaps = 4/149 (2%)

Query: 1   MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK 60
           M+  K  S FRLASLL  +  P  A++LF+NP+P + +    P +PFRY+LL YD+IITK
Sbjct: 1   MSAVKSVSSFRLASLLRRENDPSAAIKLFRNPDPESTN----PKRPFRYSLLCYDIIITK 56

Query: 61  LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
           LG +KMFDE+ Q+L QLK DTR++P EI+FCNVI+F+GR RL   AL +FDEMP +  QR
Sbjct: 57  LGGSKMFDELDQVLLQLKTDTRIVPTEILFCNVINFFGRGRLPSRALHMFDEMPQYRCQR 116

Query: 121 TVKSLNTLLNALLTCGKLDRMKELFISFN 149
           TVKSLN+LLN LL CG+ ++MKE   S +
Sbjct: 117 TVKSLNSLLNTLLKCGEFEKMKERLSSID 145

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219274|ref|NP_175740.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75192173|sp|Q9MAG8.1|PPR79_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At1g53330 gi|7769859|gb|AAF69537.1|AC008007_12 F12M16.23 [Arabidopsis thaliana] gi|332194805|gb|AEE32926.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  161 bits (408), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 84/149 (56%), Positives = 111/149 (74%), Gaps = 4/149 (2%)

Query: 1   MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK 60
           M+  K  S FRLASLL  +  P  A++LF+NP+P + +    P +PFRY+LL YD+IITK
Sbjct: 1   MSAVKSVSSFRLASLLRRENDPSAAMKLFRNPDPESTN----PKRPFRYSLLCYDIIITK 56

Query: 61  LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
           LG +KMFDE+ Q+L  LK DTR++P EIIFCNVI+F+GR +L   AL +FDEMP +  QR
Sbjct: 57  LGGSKMFDELDQVLLHLKTDTRIVPTEIIFCNVINFFGRGKLPSRALHMFDEMPQYRCQR 116

Query: 121 TVKSLNTLLNALLTCGKLDRMKELFISFN 149
           TVKSLN+LL+ALL CG+L++MKE   S +
Sbjct: 117 TVKSLNSLLSALLKCGELEKMKERLSSID 145

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357516331|ref|XP_003628454.1| hypothetical protein MTR_8g058400, partial [Medicago truncatula] gi|355522476|gb|AET02930.1| hypothetical protein MTR_8g058400, partial [Medicago truncatula]

 Score =  135 bits (339), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 73/139 (52%), Positives = 90/139 (64%), Gaps = 11/139 (7%)

Query: 1   MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK 60
           M  +KP SPFRL+SLL  QK P LA Q+F NP  +           +RY++L YDLIITK
Sbjct: 1   MGSSKPISPFRLSSLLRSQKDPSLAFQIFLNPQNH-----------YRYSILSYDLIITK 49

Query: 61  LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
           LGRAKM  +M+ IL QL +DTR    E + C+VISFY RARL   A+Q F  +PSF    
Sbjct: 50  LGRAKMIPQMELILQQLHNDTRHRVPEPLLCHVISFYARARLPSRAVQTFLSIPSFRCTP 109

Query: 121 TVKSLNTLLNALLTCGKLD 139
           T+KS N+LLNALLTC +  
Sbjct: 110 TLKSFNSLLNALLTCRRFQ 128

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	176
TAIR|locus:2009620	471	AT1G53330 [Arabidopsis thalian	0.823	0.307	0.563	9.6e-41
TAIR|locus:2026560	459	AT1G07740 "AT1G07740" [Arabido	0.556	0.213	0.363	3e-12
TAIR|locus:2090034	394	AT3G13160 [Arabidopsis thalian	0.75	0.335	0.314	4.5e-12
TAIR|locus:2012120	398	AT1G55890 [Arabidopsis thalian	0.704	0.311	0.343	5.9e-12
TAIR|locus:2171352	535	AT5G16420 "AT5G16420" [Arabido	0.732	0.241	0.326	1.8e-11
TAIR|locus:2089581	405	AT3G14580 "AT3G14580" [Arabido	0.630	0.274	0.309	4.6e-11
TAIR|locus:2115375	412	AT4G36680 [Arabidopsis thalian	0.698	0.298	0.287	4.8e-11
TAIR|locus:2090014	551	AT3G13150 "AT3G13150" [Arabido	0.511	0.163	0.387	2.2e-10
TAIR|locus:2046288	418	AT2G18520 [Arabidopsis thalian	0.715	0.301	0.296	2.2e-10
TAIR|locus:2027387	405	AT1G11630 [Arabidopsis thalian	0.744	0.323	0.303	6.9e-09

TAIR|locus:2009620 AT1G53330 [Arabidopsis thaliana (taxid:3702)]

 Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
 Identities = 84/149 (56%), Positives = 111/149 (74%)

Query:     1 MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK 60
             M+  K  S FRLASLL  +  P  A++LF+NP+P + +    P +PFRY+LL YD+IITK
Sbjct:     1 MSAVKSVSSFRLASLLRRENDPSAAMKLFRNPDPESTN----PKRPFRYSLLCYDIIITK 56

Query:    61 LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR 120
             LG +KMFDE+ Q+L  LK DTR++P EIIFCNVI+F+GR +L   AL +FDEMP +  QR
Sbjct:    57 LGGSKMFDELDQVLLHLKTDTRIVPTEIIFCNVINFFGRGKLPSRALHMFDEMPQYRCQR 116

Query:   121 TVKSLNTLLNALLTCGKLDRMKELFISFN 149
             TVKSLN+LL+ALL CG+L++MKE   S +
Sbjct:   117 TVKSLNSLLSALLKCGELEKMKERLSSID 145

GO:0005739 "mitochondrion" evidence=ISM

GO:0009790 "embryo development" evidence=IMP

GO:0010154 "fruit development" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

TAIR|locus:2026560 AT1G07740 "AT1G07740" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 3.0e-12, P = 3.0e-12
 Identities = 36/99 (36%), Positives = 62/99 (62%)

Query:    47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHA 106
             FR++   Y  +I KL +++ FD + QIL  +++   V   E +F  +I  YG+A  ++ A
Sbjct:    77 FRHDYPSYSSLIYKLAKSRNFDAVDQILRLVRY-RNVRCRESLFMGLIQHYGKAGSVDKA 135

Query:   107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
             + VF ++ SF+  RT++SLNTL+N L+  G+L++ K  F
Sbjct:   136 IDVFHKITSFDCVRTIQSLNTLINVLVDNGELEKAKSFF 174

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2090034 AT3G13160 [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 4.5e-12, P = 4.5e-12
 Identities = 45/143 (31%), Positives = 75/143 (52%)

Query:     4 AKPTSPF-RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG 62
             A P+ P   L +L++ ++ PK   + FK         +A   + FR N+  Y+  + +L 
Sbjct:    32 ATPSPPKPSLITLVNDERDPKFITEKFK---------KACQAEWFRKNIAVYERTVRRLA 82

Query:    63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV 122
              AK F+ +++IL +      +  E  +   +I+ YGR  + E+A +VFDEMP  N +RT 
Sbjct:    83 AAKKFEWVEEILEEQNKYPNMSKEGFV-ARIINLYGRVGMFENAQKVFDEMPERNCKRTA 141

Query:   123 KSLNTLLNALLTCGKLDRMKELF 145
              S N LLNA +   K D ++ +F
Sbjct:   142 LSFNALLNACVNSKKFDLVEGIF 164

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

TAIR|locus:2012120 AT1G55890 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 5.9e-12, P = 5.9e-12
 Identities = 46/134 (34%), Positives = 77/134 (57%)

Query:    12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQ 71
             L SL++ +++PK  ++ FK     A ++E      FR N+  YD  + +L  AK    ++
Sbjct:    44 LTSLVNGERNPKRIVEKFKK----ACESER-----FRTNIAVYDRTVRRLVAAKRLHYVE 94

Query:    72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA 131
             +IL + K   R + +E     +IS YG+A + E+A +VF+EMP+ + +R+V S N LL+A
Sbjct:    95 EILEEQKK-YRDMSKEGFAARIISLYGKAGMFENAQKVFEEMPNRDCKRSVLSFNALLSA 153

Query:   132 LLTCGKLDRMKELF 145
                  K D ++ELF
Sbjct:   154 YRLSKKFDVVEELF 167

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2171352 AT5G16420 "AT5G16420" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 45/138 (32%), Positives = 77/138 (55%)

Query:     9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFD 68
             P RL S++  Q++  LALQ+F          ++ P   F +N   Y  I+ KL RA+ FD
Sbjct:    49 PKRLVSMITQQQNIDLALQIFLYAG------KSHP--GFTHNYDTYHSILFKLSRARAFD 100

Query:    69 EMQQILHQLKHDTRVIP-EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT 127
              ++ ++  L++    I   E +F +++  YG A   E ++++F  +P F V+R+V+SLNT
Sbjct:   101 PVESLMADLRNSYPPIKCGENLFIDLLRNYGLAGRYESSMRIFLRIPDFGVKRSVRSLNT 160

Query:   128 LLNALLTCGKLDRMKELF 145
             LLN L+   + D +  +F
Sbjct:   161 LLNVLIQNQRFDLVHAMF 178

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2089581 AT3G14580 "AT3G14580" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 4.6e-11, P = 4.6e-11
 Identities = 35/113 (30%), Positives = 62/113 (54%)

Query:    54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR-ARLLEHALQVFDE 112
             Y L+I K G+AKM+DE+++++  +K + R    E  F N++  YG  A  +  A+++   
Sbjct:    98 YALMINKFGQAKMYDEIEEVMRTIKLEKRCRFSEEFFYNLMRIYGNLAGRINRAIEILFG 157

Query:   113 MPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI 165
             MP F    + KS N +LN L++    D + ++F+S     + + D  C N+ I
Sbjct:   158 MPDFGCWPSSKSFNFILNLLVSAKLFDEIHKIFVSAPKLGVEI-DACCLNILI 209

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2115375 AT4G36680 [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 4.8e-11, P = 4.8e-11
 Identities = 38/132 (28%), Positives = 69/132 (52%)

Query:    14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
             S L  +  P  AL+++ N     +D  A P+   RY     +L + +L + + F +++ +
Sbjct:    38 STLRKEHDPDKALKIYAN----VSDHSASPVSS-RYA---QELTVRRLAKCRRFSDIETL 89

Query:    74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
             +   K+D + I EE  +  +I  YG+A +  HA++ F++M  +   R+  S N LLNA L
Sbjct:    90 IESHKNDPK-IKEEPFYSTLIRSYGQASMFNHAMRTFEQMDQYGTPRSAVSFNALLNACL 148

Query:   134 TCGKLDRMKELF 145
                  D++ +LF
Sbjct:   149 HSKNFDKVPQLF 160

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

TAIR|locus:2090014 AT3G13150 "AT3G13150" [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 36/93 (38%), Positives = 51/93 (54%)

Query:    54 YDLIITKLGRAKMFDEMQQIL-HQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDE 112
             Y   I +L  AK F  + ++L +Q K D   I  E     ++  YG + + EHA ++FDE
Sbjct:    90 YSAFIRRLREAKKFSTIDEVLQYQKKFDD--IKSEDFVIRIMLLYGYSGMAEHAHKLFDE 147

Query:   113 MPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF 145
             MP  N +RTVKS N LL+A +   KLD   + F
Sbjct:   148 MPELNCERTVKSFNALLSAYVNSKKLDEAMKTF 180

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2046288 AT2G18520 [Arabidopsis thaliana (taxid:3702)]

 Score = 154 (59.3 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 40/135 (29%), Positives = 71/135 (52%)

Query:    14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI 73
             S L   + P  AL ++K+ + N+      PL   RY +   +L + +L +++ F +++ +
Sbjct:    38 SKLRKVQDPDKALAIYKSVSNNSTS----PLSS-RYAM---ELTVQRLAKSQRFSDIEAL 89

Query:    74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL 133
             +   K++ + I  E     +I  YGRA + +HA+++F+EM      RTV S N LL A L
Sbjct:    90 IESHKNNPK-IKTETFLSTLIRSYGRASMFDHAMKMFEEMDKLGTPRTVVSFNALLAACL 148

Query:   134 TCGKLDRMKELFISF 148
                  +R+ +LF  F
Sbjct:   149 HSDLFERVPQLFDEF 163

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2027387 AT1G11630 [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 6.9e-09, P = 6.9e-09
 Identities = 41/135 (30%), Positives = 62/135 (45%)

Query:     3 KAKPTSPFRLASLLHLQKHPKLALQLFK---NPNPNANDTEAPPLKP-FRYNLLHYDLII 58
             K+  +S F L SL   QK  +  L L K   NP+       +  L P +  + + + + +
Sbjct:    23 KSSSSSIFTLKSLTSKQKKSRDTLSLLKSENNPDRILEICRSTSLSPDYHVDRIIFSVAV 82

Query:    59 TKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNV 118
               L R K F  + Q+L     +      E      I  YGRA +L+ ++Q F  +  + +
Sbjct:    83 VTLAREKHFVAVSQLLDGFIQNQPDPKSESFAVRAIILYGRANMLDRSIQTFRNLEQYEI 142

Query:   119 QRTVKSLNTLLNALL 133
              RTVKSLN LL A L
Sbjct:   143 PRTVKSLNALLFACL 157

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00110806 hypothetical protein (461 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	176
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-04

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 37.0 bits (87), Expect = 2e-04
 Identities = 12/48 (25%), Positives = 27/48 (56%)

Query: 85  PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL 132
           P+ + +  +I  Y +   +E AL++F+EM    ++  V + + L++ L
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	176
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	99.97
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	99.97
PLN03077	857	Protein ECB2; Provisional	99.97
PF13041	50	PPR_2: PPR repeat family	99.71
PF13041	50	PPR_2: PPR repeat family	99.68
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.44
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.42
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.41
PF12854	34	PPR_1: PPR repeat	99.28
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.26
PF12854	34	PPR_1: PPR repeat	99.26
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.24
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.22
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.14
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.14
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.11
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.07
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.93
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.93
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.93
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.88
PRK12370	553	invasion protein regulator; Provisional	98.86
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.86
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.83
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.83
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.79
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.78
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.77
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.75
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.75
PRK12370	553	invasion protein regulator; Provisional	98.7
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.67
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.67
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.66
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.59
KOG1126	638	consensus DNA-binding cell division cycle control	98.59
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.58
PRK15359	144	type III secretion system chaperone protein SscB;	98.54
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.5
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.46
KOG1129	478	consensus TPR repeat-containing protein [General f	98.46
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.46
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.45
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.45
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.43
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	98.41
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.4
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.38
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.37
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.37
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.37
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.34
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.33
PRK14574	822	hmsH outer membrane protein; Provisional	98.32
PRK11189	296	lipoprotein NlpI; Provisional	98.32
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.32
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.31
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.31
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.31
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	98.3
PRK14574	822	hmsH outer membrane protein; Provisional	98.3
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.29
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	98.29
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.29
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.26
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.26
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.26
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.25
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.23
PRK15359	144	type III secretion system chaperone protein SscB;	98.22
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.2
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.19
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.18
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.17
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.17
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.16
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.16
KOG1129	478	consensus TPR repeat-containing protein [General f	98.16
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	98.15
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.15
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.14
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.14
KOG2003	840	consensus TPR repeat-containing protein [General f	98.12
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	98.12
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.08
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.08
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.06
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.05
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.05
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.02
PRK11189	296	lipoprotein NlpI; Provisional	98.01
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.01
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.0
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.97
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.97
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.96
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.96
KOG1126	638	consensus DNA-binding cell division cycle control	97.93
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.93
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.9
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.88
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.87
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.86
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.84
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.83
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.75
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.75
KOG0547	606	consensus Translocase of outer mitochondrial membr	97.71
KOG2076	895	consensus RNA polymerase III transcription factor	97.71
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.7
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.68
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.68
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.64
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.64
KOG2076	895	consensus RNA polymerase III transcription factor	97.64
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.62
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.61
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.61
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	97.55
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.54
KOG2003	840	consensus TPR repeat-containing protein [General f	97.51
PLN02789	320	farnesyltranstransferase	97.5
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.47
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.42
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.42
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.41
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.34
PF13371	73	TPR_9: Tetratricopeptide repeat	97.34
KOG0547	606	consensus Translocase of outer mitochondrial membr	97.31
PF12688	120	TPR_5: Tetratrico peptide repeat	97.31
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.3
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.27
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.26
KOG3941	406	consensus Intermediate in Toll signal transduction	97.25
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	97.24
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.24
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.23
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.23
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.19
KOG3941	406	consensus Intermediate in Toll signal transduction	97.17
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.15
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.15
PRK10803	263	tol-pal system protein YbgF; Provisional	97.14
KOG0553	304	consensus TPR repeat-containing protein [General f	97.11
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.11
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.09
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.08
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.08
PLN02789	320	farnesyltranstransferase	97.02
PF12688	120	TPR_5: Tetratrico peptide repeat	97.01
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.97
KOG3060	289	consensus Uncharacterized conserved protein [Funct	96.94
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.92
KOG2047	835	consensus mRNA splicing factor [RNA processing and	96.91
PRK10803	263	tol-pal system protein YbgF; Provisional	96.89
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.86
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.78
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.77
PF13929	292	mRNA_stabil: mRNA stabilisation	96.75
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.73
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.7
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.67
PF13371	73	TPR_9: Tetratricopeptide repeat	96.65
KOG1128	777	consensus Uncharacterized conserved protein, conta	96.63
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	96.61
KOG3616	1636	consensus Selective LIM binding factor [Transcript	96.6
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.56
KOG1125	579	consensus TPR repeat-containing protein [General f	96.52
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.51
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.5
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.48
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.43
KOG4570	418	consensus Uncharacterized conserved protein [Funct	96.37
PRK14720	906	transcript cleavage factor/unknown domain fusion p	96.37
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	96.37
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.35
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.28
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.27
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	96.18
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.16
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.15
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	96.11
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	96.06
COG3629	280	DnrI DNA-binding transcriptional activator of the	96.02
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.01
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.0
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.99
PRK15331	165	chaperone protein SicA; Provisional	95.92
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.83
PF13428	44	TPR_14: Tetratricopeptide repeat	95.83
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.73
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	95.71
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	95.69
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.59
KOG1125	579	consensus TPR repeat-containing protein [General f	95.59
KOG2376	652	consensus Signal recognition particle, subunit Srp	95.59
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.59
KOG0553	304	consensus TPR repeat-containing protein [General f	95.59
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.45
PRK04841	903	transcriptional regulator MalT; Provisional	95.45
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	95.42
PRK04841	903	transcriptional regulator MalT; Provisional	95.32
KOG2047	835	consensus mRNA splicing factor [RNA processing and	95.26
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	95.12
PF13512	142	TPR_18: Tetratricopeptide repeat	95.11
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.04
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.03
KOG2796	366	consensus Uncharacterized conserved protein [Funct	94.98
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.97
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	94.96
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.94
KOG4340	459	consensus Uncharacterized conserved protein [Funct	94.94
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	94.91
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.75
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.64
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	94.64
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	94.64
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	94.62
PF13762	145	MNE1: Mitochondrial splicing apparatus component	94.57
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	94.43
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	94.31
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.22
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	94.12
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.12
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	94.11
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	93.77
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	93.76
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	93.75
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.69
COG3118	304	Thioredoxin domain-containing protein [Posttransla	93.64
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	93.62
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	93.58
PF13428	44	TPR_14: Tetratricopeptide repeat	93.51
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	93.36
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.29
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	93.06
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	92.85
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	92.72
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	92.5
KOG4555	175	consensus TPR repeat-containing protein [Function	92.44
KOG4570	418	consensus Uncharacterized conserved protein [Funct	92.42
PF13512	142	TPR_18: Tetratricopeptide repeat	92.29
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	92.22
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	92.0
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	91.97
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	91.87
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	91.77
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	91.48
PRK15331	165	chaperone protein SicA; Provisional	91.35
PF10366	108	Vps39_1: Vacuolar sorting protein 39 domain 1; Int	91.15
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	91.07
KOG2610	491	consensus Uncharacterized conserved protein [Funct	90.9
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	90.9
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	90.88
COG3898	531	Uncharacterized membrane-bound protein [Function u	90.84
PF13929	292	mRNA_stabil: mRNA stabilisation	90.81
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	90.79
KOG4555	175	consensus TPR repeat-containing protein [Function	90.71
COG4105	254	ComL DNA uptake lipoprotein [General function pred	90.67
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	90.2
COG3947	361	Response regulator containing CheY-like receiver a	90.03
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	89.41
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	89.37
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	88.78
COG3898	531	Uncharacterized membrane-bound protein [Function u	88.69
COG4455	273	ImpE Protein of avirulence locus involved in tempe	88.32
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	88.12
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	87.86
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	87.79
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	87.17
COG4455	273	ImpE Protein of avirulence locus involved in tempe	87.12
PF11848	48	DUF3368: Domain of unknown function (DUF3368); Int	86.86
KOG2610	491	consensus Uncharacterized conserved protein [Funct	86.69
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	86.44
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	86.39
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	86.32
PRK10564	303	maltose regulon periplasmic protein; Provisional	86.07
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	85.72
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	85.49
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	85.26
PF13934	226	ELYS: Nuclear pore complex assembly	84.82
PF13762	145	MNE1: Mitochondrial splicing apparatus component	84.42
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	84.3
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	84.29
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	84.29
KOG2041	1189	consensus WD40 repeat protein [General function pr	84.11
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	84.08
PF11663	140	Toxin_YhaV: Toxin with endonuclease activity YhaV;	83.78
PF13431	34	TPR_17: Tetratricopeptide repeat	83.76
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	83.75
KOG2041	1189	consensus WD40 repeat protein [General function pr	83.71
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	83.49
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	83.48
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	83.3
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	83.18
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	82.91
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	82.56
PF08870	113	DUF1832: Domain of unknown function (DUF1832); Int	82.33
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	82.03
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	81.53
COG4105	254	ComL DNA uptake lipoprotein [General function pred	81.28
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	81.17
PF13934	226	ELYS: Nuclear pore complex assembly	80.95
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	80.88
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	80.69
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	80.69
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	80.66
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	80.48
COG5108	1117	RPO41 Mitochondrial DNA-directed RNA polymerase [T	80.48
PF09454	65	Vps23_core: Vps23 core domain; InterPro: IPR017916	80.48
PF11663	140	Toxin_YhaV: Toxin with endonuclease activity YhaV;	80.18
TIGR03184	105	DNA_S_dndE DNA sulfur modification protein DndE. T	80.12

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=7.3e-33  Score=229.97  Aligned_cols=160  Identities=13%  Similarity=0.264  Sum_probs=99.7

Q ss_pred             CCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036589            4 AKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV   83 (176)
Q Consensus         4 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~   83 (176)
                      |++.+|+.+|.+|++.|++++|.++|++| ..         .++.||..+|+++|.+|++.|++++|.++|++|.+. |+
T Consensus       612 p~~~tynsLI~ay~k~G~~deAl~lf~eM-~~---------~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-G~  680 (1060)
T PLN03218        612 GTPEVYTIAVNSCSQKGDWDFALSIYDDM-KK---------KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GI  680 (1060)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHH-HH---------cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CC
Confidence            44455555555555555555555555555 33         345566666666666666666666666666666666 66


Q ss_pred             CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHH
Q 036589           84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNL  163 (176)
Q Consensus        84 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~  163 (176)
                      .||..+|++||.+|+++|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+. ||..||+.
T Consensus       681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~-Pd~~Ty~s  759 (1060)
T PLN03218        681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC-PNTITYSI  759 (1060)
T ss_pred             CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CCHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666 66666666


Q ss_pred             HHHHhhccccCC
Q 036589          164 KIIMNDSQVRVT  175 (176)
Q Consensus       164 li~~~~~~g~~~  175 (176)
                      +|.+|++.|+++
T Consensus       760 LL~a~~k~G~le  771 (1060)
T PLN03218        760 LLVASERKDDAD  771 (1060)
T ss_pred             HHHHHHHCCCHH
Confidence            666666666543

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=4.8e-33  Score=231.05  Aligned_cols=159  Identities=13%  Similarity=0.139  Sum_probs=83.3

Q ss_pred             CCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036589            4 AKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV   83 (176)
Q Consensus         4 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~   83 (176)
                      |+.++|+.|+.+|++.|++++|.++|++| .+         .++.|+..+|+++|.+|++.|++++|.++|++|.+. |+
T Consensus       577 PD~vTynaLI~ay~k~G~ldeA~elf~~M-~e---------~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv  645 (1060)
T PLN03218        577 PDHITVGALMKACANAGQVDRAKEVYQMI-HE---------YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GV  645 (1060)
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHH-HH---------cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC
Confidence            44444444444444444444444444444 22         234445555555555555555555555555555555 55


Q ss_pred             CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHH
Q 036589           84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNL  163 (176)
Q Consensus        84 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~  163 (176)
                      .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+. ||..+||+
T Consensus       646 ~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~-PdvvtyN~  724 (1060)
T PLN03218        646 KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR-PTVSTMNA  724 (1060)
T ss_pred             CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CCHHHHHH
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555 55555555


Q ss_pred             HHHHhhccccC
Q 036589          164 KIIMNDSQVRV  174 (176)
Q Consensus       164 li~~~~~~g~~  174 (176)
                      ||.+|++.|++
T Consensus       725 LI~gy~k~G~~  735 (1060)
T PLN03218        725 LITALCEGNQL  735 (1060)
T ss_pred             HHHHHHHCCCH
Confidence            55555555554

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=5.9e-33  Score=225.61  Aligned_cols=159  Identities=15%  Similarity=0.183  Sum_probs=144.2

Q ss_pred             CCCCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036589            1 MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD   80 (176)
Q Consensus         1 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~   80 (176)
                      |.+|+.++||.|+.+|++.|++++|+++|++| ..         .++.||..+|+++|.+|++.|++++|.+++.+|.+.
T Consensus       285 m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M-~~---------~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~  354 (697)
T PLN03081        285 MPEKTTVAWNSMLAGYALHGYSEEALCLYYEM-RD---------SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT  354 (697)
T ss_pred             CCCCChhHHHHHHHHHHhCCCHHHHHHHHHHH-HH---------cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Confidence            56788999999999999999999999999999 44         478899999999999999999999999999999999


Q ss_pred             CCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHH
Q 036589           81 TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLC  160 (176)
Q Consensus        81 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t  160 (176)
                       |+.||..+||+||.+|+++|++++|.++|++|.    .||..+||+||.+|+++|+.++|.++|++|.+.|+. ||..|
T Consensus       355 -g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~-Pd~~T  428 (697)
T PLN03081        355 -GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA-PNHVT  428 (697)
T ss_pred             -CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CCHHH
Confidence             899999999999999999999999999999987    478899999999999999999999999999999998 99999


Q ss_pred             HHHHHHHhhccccCC
Q 036589          161 SNLKIIMNDSQVRVT  175 (176)
Q Consensus       161 ~~~li~~~~~~g~~~  175 (176)
                      |+.+|.+|++.|+++
T Consensus       429 ~~~ll~a~~~~g~~~  443 (697)
T PLN03081        429 FLAVLSACRYSGLSE  443 (697)
T ss_pred             HHHHHHHHhcCCcHH
Confidence            999999999988765

>PLN03077 Protein ECB2; Provisional

Probab=99.97  E-value=1.7e-30  Score=215.41  Aligned_cols=159  Identities=12%  Similarity=0.047  Sum_probs=141.7

Q ss_pred             CCCCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036589            1 MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD   80 (176)
Q Consensus         1 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~   80 (176)
                      |..|+.++||.||.+|++.|++++|+++|++| ..         .++.||..+|+.+|.+|++.|+++.|.+++..|.+.
T Consensus       248 m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M-~~---------~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~  317 (857)
T PLN03077        248 MPRRDCISWNAMISGYFENGECLEGLELFFTM-RE---------LSVDPDLMTITSVISACELLGDERLGREMHGYVVKT  317 (857)
T ss_pred             CCCCCcchhHHHHHHHHhCCCHHHHHHHHHHH-HH---------cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence            56788889999999999999999999999998 44         478899999999999999999999999999999988


Q ss_pred             CCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHH
Q 036589           81 TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLC  160 (176)
Q Consensus        81 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t  160 (176)
                       |+.||..+||+||.+|+++|++++|.++|++|.    .||..+||++|.+|++.|++++|.++|++|.+.|+. ||..|
T Consensus       318 -g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~-Pd~~t  391 (857)
T PLN03077        318 -GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS-PDEIT  391 (857)
T ss_pred             -CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CCcee
Confidence             899999999999999999999999999999997    478889999999999999999999999999999988 99988


Q ss_pred             HHHHHHHhhccccCC
Q 036589          161 SNLKIIMNDSQVRVT  175 (176)
Q Consensus       161 ~~~li~~~~~~g~~~  175 (176)
                      |+.+|.+|++.|+++
T Consensus       392 ~~~ll~a~~~~g~~~  406 (857)
T PLN03077        392 IASVLSACACLGDLD  406 (857)
T ss_pred             HHHHHHHHhccchHH
Confidence            888888888888765

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=99.97  E-value=4.4e-30  Score=208.88  Aligned_cols=167  Identities=11%  Similarity=0.080  Sum_probs=86.5

Q ss_pred             CCCCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCC--------------------------CCCCCCCCcHHHH
Q 036589            1 MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEA--------------------------PPLKPFRYNLLHY   54 (176)
Q Consensus         1 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~y   54 (176)
                      |.+|+.++||.++.+|++.|++++|+++|++| .+.+....                          ....++.||..+|
T Consensus       184 m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M-~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~  262 (697)
T PLN03081        184 MPERNLASWGTIIGGLVDAGNYREAFALFREM-WEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVS  262 (697)
T ss_pred             CCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHH-HHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeH
Confidence            45677777777777777777777777777777 33110000                          0011233344444


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHh
Q 036589           55 DLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLT  134 (176)
Q Consensus        55 ~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  134 (176)
                      ++||++|++.|++++|.++|++|..     +|.++||++|.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++
T Consensus       263 n~Li~~y~k~g~~~~A~~vf~~m~~-----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~  337 (697)
T PLN03081        263 CALIDMYSKCGDIEDARCVFDGMPE-----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR  337 (697)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCC-----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            4444444444555555554444432     24445555555555555555555555555555555555555555555555


Q ss_pred             cCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccC
Q 036589          135 CGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       135 ~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~  174 (176)
                      .|++++|.+++.+|.+.|+. ||..+|++||++|+++|++
T Consensus       338 ~g~~~~a~~i~~~m~~~g~~-~d~~~~~~Li~~y~k~G~~  376 (697)
T PLN03081        338 LALLEHAKQAHAGLIRTGFP-LDIVANTALVDLYSKWGRM  376 (697)
T ss_pred             ccchHHHHHHHHHHHHhCCC-CCeeehHHHHHHHHHCCCH
Confidence            55555555555555555555 5555555555555555544

>PLN03077 Protein ECB2; Provisional

Probab=99.97  E-value=1.3e-29  Score=210.09  Aligned_cols=158  Identities=16%  Similarity=0.101  Sum_probs=106.2

Q ss_pred             CCCCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036589            1 MNKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD   80 (176)
Q Consensus         1 ~~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~   80 (176)
                      |..|+.++||.+|.+|++.|++++|+++|++| ..         .++.||..+|+.+|.+|++.+++..+.+++..|.+.
T Consensus       147 m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M-~~---------~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~  216 (857)
T PLN03077        147 MPERDLFSWNVLVGGYAKAGYFDEALCLYHRM-LW---------AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF  216 (857)
T ss_pred             CCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHH-HH---------cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHc
Confidence            67889999999999999999999999999999 44         356667776666666666666666666666666655


Q ss_pred             CCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHH
Q 036589           81 TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLC  160 (176)
Q Consensus        81 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t  160 (176)
                       |+.||..+||+||.+|+++|++++|.++|++|.    .||..+||+||.+|++.|++++|.++|++|.+.|+. ||..|
T Consensus       217 -g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~-Pd~~t  290 (857)
T PLN03077        217 -GFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVD-PDLMT  290 (857)
T ss_pred             -CCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-CChhH
Confidence             666666666666666666666666666666665    255556666666666666666666666666655555 55555


Q ss_pred             HHHHHHHhhccccC
Q 036589          161 SNLKIIMNDSQVRV  174 (176)
Q Consensus       161 ~~~li~~~~~~g~~  174 (176)
                      |+.+|.+|++.|++
T Consensus       291 y~~ll~a~~~~g~~  304 (857)
T PLN03077        291 ITSVISACELLGDE  304 (857)
T ss_pred             HHHHHHHHHhcCCh
Confidence            55555555555543

>PF13041 PPR_2: PPR repeat family

Probab=99.71  E-value=4.2e-17  Score=88.78  Aligned_cols=50  Identities=24%  Similarity=0.281  Sum_probs=39.1

Q ss_pred             ccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhc
Q 036589          120 RTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDS  170 (176)
Q Consensus       120 p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~  170 (176)
                      ||..+||++|++|++.|++++|.++|++|.+.|+. ||..||++||++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~-P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIK-PDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHcC
Confidence            67777777777777777777777777777777777 777777777777764

>PF13041 PPR_2: PPR repeat family

Probab=99.68  E-value=9.3e-17  Score=87.42  Aligned_cols=50  Identities=30%  Similarity=0.482  Sum_probs=29.5

Q ss_pred             CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHh
Q 036589           85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLT  134 (176)
Q Consensus        85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  134 (176)
                      ||.++||++|.+|++.|++++|+++|++|.+.|++||..||++||++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            45555666666666666666666666666655666666666666655543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.44  E-value=7e-12  Score=95.97  Aligned_cols=154  Identities=9%  Similarity=-0.030  Sum_probs=94.8

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc-
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE-   86 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~-   86 (176)
                      .+..+...|.+.|++++|..+|+++ ...          .+++..++..++..+.+.|++++|.+.++.+.+. +..+. 
T Consensus       109 ~~~~La~~~~~~g~~~~A~~~~~~~-l~~----------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~  176 (389)
T PRK11788        109 ALQELGQDYLKAGLLDRAEELFLQL-VDE----------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL-GGDSLR  176 (389)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHH-HcC----------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh-cCCcch
Confidence            3455566666667777777777666 221          1235566777777777777777777777777655 32221 


Q ss_pred             ---hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHH
Q 036589           87 ---EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNL  163 (176)
Q Consensus        87 ---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~  163 (176)
                         ...+..+...+.+.|++++|+..|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+.. ....+++.
T Consensus       177 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~  254 (389)
T PRK11788        177 VEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPE-YLSEVLPK  254 (389)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChh-hHHHHHHH
Confidence               1234455566667777777777777766432 223445666667777777777777777777665433 33456677


Q ss_pred             HHHHhhccccCC
Q 036589          164 KIIMNDSQVRVT  175 (176)
Q Consensus       164 li~~~~~~g~~~  175 (176)
                      +..+|...|+++
T Consensus       255 l~~~~~~~g~~~  266 (389)
T PRK11788        255 LMECYQALGDEA  266 (389)
T ss_pred             HHHHHHHcCCHH
Confidence            777777766654

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.42  E-value=2.5e-12  Score=96.50  Aligned_cols=118  Identities=12%  Similarity=0.100  Sum_probs=107.1

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL  129 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  129 (176)
                      +..+|.+||.++|+--..+.|.++|++..+. ..+.+..+||.+|.+-    .+.....+..+|.+..+.||..|||+++
T Consensus       206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~----S~~~~K~Lv~EMisqkm~Pnl~TfNalL  280 (625)
T KOG4422|consen  206 TDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGAS----SYSVGKKLVAEMISQKMTPNLFTFNALL  280 (625)
T ss_pred             CchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHH----HhhccHHHHHHHHHhhcCCchHhHHHHH
Confidence            7789999999999999999999999999999 7899999999999874    3455588899999999999999999999


Q ss_pred             HHHHhcCcHHH----HHHHHHHHHhccccccchHHHHHHHHHhhcccc
Q 036589          130 NALLTCGKLDR----MKELFISFNLKAIAVLDGLCSNLKIIMNDSQVR  173 (176)
Q Consensus       130 ~~~~~~g~~~~----a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~  173 (176)
                      .+..+-|+++.    |.+++.+|++-|+. |...+|-.+|..+++.++
T Consensus       281 ~c~akfg~F~~ar~aalqil~EmKeiGVe-PsLsSyh~iik~f~re~d  327 (625)
T KOG4422|consen  281 SCAAKFGKFEDARKAALQILGEMKEIGVE-PSLSSYHLIIKNFKRESD  327 (625)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHhCCC-cchhhHHHHHHHhcccCC
Confidence            99999998764    66889999999999 999999999999988765

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.41  E-value=1.4e-11  Score=94.26  Aligned_cols=142  Identities=10%  Similarity=-0.085  Sum_probs=85.7

Q ss_pred             HHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHH
Q 036589           11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIF   90 (176)
Q Consensus        11 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~   90 (176)
                      .+...+.+.|++++|.+.|+++ .+.          .+.+...+..+...+.+.|++++|.+.++++... +......++
T Consensus       185 ~la~~~~~~~~~~~A~~~~~~a-l~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~  252 (389)
T PRK11788        185 ELAQQALARGDLDAARALLKKA-LAA----------DPQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVL  252 (389)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHH-HhH----------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHH
Confidence            3444445556666666666555 111          1123445556666666777777777777776654 222224456


Q ss_pred             HHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhh
Q 036589           91 CNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMND  169 (176)
Q Consensus        91 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~  169 (176)
                      +.+..+|.+.|++++|.+.++++.+..  |+...++.+...+.+.|++++|.++|+++.+.  . |+..+++.++..+.
T Consensus       253 ~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~-P~~~~~~~l~~~~~  326 (389)
T PRK11788        253 PKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--H-PSLRGFHRLLDYHL  326 (389)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--C-cCHHHHHHHHHHhh
Confidence            666777777777777777777766542  55555566677777777777777777766554  3 66666766666555

>PF12854 PPR_1: PPR repeat

Probab=99.28  E-value=6e-12  Score=62.37  Aligned_cols=32  Identities=28%  Similarity=0.544  Sum_probs=16.1

Q ss_pred             CCCCchHHHHHHHHHHHhccCHHHHHHHHHhc
Q 036589           82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEM  113 (176)
Q Consensus        82 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  113 (176)
                      |+.||.+|||+||.+||+.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            44455555555555555555555555555544

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.26  E-value=2.9e-10  Score=94.58  Aligned_cols=151  Identities=11%  Similarity=0.044  Sum_probs=81.0

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      .+..+...|.+.|++++|..+++.+ ..          ..+.+...|..+..++.+.|++++|...|+++.+. . ..+.
T Consensus       569 ~~~~l~~~~~~~~~~~~A~~~~~~~-~~----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~  635 (899)
T TIGR02917       569 PALALAQYYLGKGQLKKALAILNEA-AD----------AAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL-Q-PDSA  635 (899)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHH-HH----------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-CCCh
Confidence            4445555556666666666666555 21          12234556666666666666666666666666544 1 2233


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHH
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIM  167 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~  167 (176)
                      ..+..+..+|.+.|++++|...|+++.+.. +.+..++..+...+...|++++|.++++.+.+...  ++...+..+...
T Consensus       636 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~  712 (899)
T TIGR02917       636 LALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP--KAALGFELEGDL  712 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--CChHHHHHHHHH
Confidence            445556666666666666666666555332 22345555555555555555555555555554443  244445555555


Q ss_pred             hhccccC
Q 036589          168 NDSQVRV  174 (176)
Q Consensus       168 ~~~~g~~  174 (176)
                      +.+.|++
T Consensus       713 ~~~~g~~  719 (899)
T TIGR02917       713 YLRQKDY  719 (899)
T ss_pred             HHHCCCH
Confidence            5554443

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF12854 PPR_1: PPR repeat

Probab=99.26  E-value=1.2e-11  Score=61.28  Aligned_cols=34  Identities=26%  Similarity=0.410  Sum_probs=26.5

Q ss_pred             CCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 036589          116 FNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN  149 (176)
Q Consensus       116 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~  149 (176)
                      .|+.||..+||+||++||+.|++++|.++|++|+
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            3677888888888888888888888888887773

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.24  E-value=3.7e-10  Score=93.88  Aligned_cols=154  Identities=12%  Similarity=0.040  Sum_probs=103.6

Q ss_pred             CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589            5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI   84 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~   84 (176)
                      +..++..+...+.+.|++++|.+.++.+. .          ..+.+...+..+...|.+.|++++|...|+++.+. . +
T Consensus       735 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l-~----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~-p  801 (899)
T TIGR02917       735 SSQNAIKLHRALLASGNTAEAVKTLEAWL-K----------THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK-A-P  801 (899)
T ss_pred             CchHHHHHHHHHHHCCCHHHHHHHHHHHH-H----------hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh-C-C
Confidence            33444455555555566666655555551 1          12335566666666777777777777777777655 2 3


Q ss_pred             CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHH
Q 036589           85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLK  164 (176)
Q Consensus        85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~l  164 (176)
                      .+...++.+...+.+.|+ .+|+..+++..+.. +-+...+..+...+...|++++|.++|+++.+.+..  +..++..+
T Consensus       802 ~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~--~~~~~~~l  877 (899)
T TIGR02917       802 DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE--AAAIRYHL  877 (899)
T ss_pred             CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--ChHHHHHH
Confidence            455666667777777777 66777777665432 224455667778888899999999999999887764  88899999


Q ss_pred             HHHhhccccCC
Q 036589          165 IIMNDSQVRVT  175 (176)
Q Consensus       165 i~~~~~~g~~~  175 (176)
                      ..++.+.|+.+
T Consensus       878 ~~~~~~~g~~~  888 (899)
T TIGR02917       878 ALALLATGRKA  888 (899)
T ss_pred             HHHHHHcCCHH
Confidence            99999998865

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.22  E-value=1.5e-10  Score=87.10  Aligned_cols=130  Identities=12%  Similarity=0.151  Sum_probs=109.2

Q ss_pred             CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589            5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI   84 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~   84 (176)
                      ++.|+.+||.++++-...++|.+++++. .+         ...+.+..+||.+|.+-.-..    ..++..+|... .+.
T Consensus       206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~-~~---------~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisq-km~  270 (625)
T KOG4422|consen  206 TDETVSIMIAGLCKFSSLERARELYKEH-RA---------AKGKVYREAFNGLIGASSYSV----GKKLVAEMISQ-KMT  270 (625)
T ss_pred             CchhHHHHHHHHHHHHhHHHHHHHHHHH-HH---------hhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHh-hcC
Confidence            5679999999999999999999999998 33         345678899999987765433    37889999999 899


Q ss_pred             CchHHHHHHHHHHHhccCHHHH----HHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHH-HHHHHHHHH
Q 036589           85 PEEIIFCNVISFYGRARLLEHA----LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDR-MKELFISFN  149 (176)
Q Consensus        85 ~~~~~~~~li~~~~~~g~~~~a----~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~-a~~l~~~m~  149 (176)
                      ||..|||+++.+.++.|+++.|    .+++.+|++-|+.|...+|..+|.-+++.++..+ |..++.+..
T Consensus       271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~  340 (625)
T KOG4422|consen  271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ  340 (625)
T ss_pred             CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence            9999999999999999988654    5788899999999999999999999999887644 555555543

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.14  E-value=1.4e-09  Score=88.03  Aligned_cols=164  Identities=12%  Similarity=-0.016  Sum_probs=122.4

Q ss_pred             CCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCC---------------CCCCCCCcHHHHHHHHHHHHhcCCh
Q 036589            3 KAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAP---------------PLKPFRYNLLHYDLIITKLGRAKMF   67 (176)
Q Consensus         3 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~y~~li~~~~~~g~~   67 (176)
                      .|+++||.++|.-||..|+++.|- +|.-| +...-..+.               ...+-.|...+|..++.+|..+|++
T Consensus        22 ~PnRvtyqsLiarYc~~gdieaat-if~fm-~~ksLpv~e~vf~~lv~sh~~And~Enpkep~aDtyt~Ll~ayr~hGDl   99 (1088)
T KOG4318|consen   22 LPNRVTYQSLIARYCTKGDIEAAT-IFPFM-EIKSLPVREGVFRGLVASHKEANDAENPKEPLADTYTNLLKAYRIHGDL   99 (1088)
T ss_pred             CCchhhHHHHHHHHcccCCCcccc-chhhh-hcccccccchhHHHHHhcccccccccCCCCCchhHHHHHHHHHHhccch
Confidence            589999999999999999999998 88887 333222221               1233468899999999999999985


Q ss_pred             H---HHHHHHHHHhhc----------------------------------------------------------------
Q 036589           68 D---EMQQILHQLKHD----------------------------------------------------------------   80 (176)
Q Consensus        68 ~---~a~~~~~~m~~~----------------------------------------------------------------   80 (176)
                      .   .+++.+..+..+                                                                
T Consensus       100 i~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~vfLr  179 (1088)
T KOG4318|consen  100 ILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLR  179 (1088)
T ss_pred             HHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHHHHH
Confidence            4   444423332222                                                                


Q ss_pred             -----------------CCC-CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHH
Q 036589           81 -----------------TRV-IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMK  142 (176)
Q Consensus        81 -----------------~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~  142 (176)
                                       ... .|+..+|.+++.+-..+|+.+.|..++.+|.+.|++.+.+-|..||-+   .++..-++
T Consensus       180 qnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e  256 (1088)
T KOG4318|consen  180 QNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFE  256 (1088)
T ss_pred             HhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHH
Confidence                             111 366677777778888888888888888888888888888888888766   77777888


Q ss_pred             HHHHHHHhccccccchHHHHHHHHHhhccc
Q 036589          143 ELFISFNLKAIAVLDGLCSNLKIIMNDSQV  172 (176)
Q Consensus       143 ~l~~~m~~~~~~~p~~~t~~~li~~~~~~g  172 (176)
                      .+++.|.+.|+. |+..|+...+..+.+.|
T Consensus       257 ~vlrgmqe~gv~-p~seT~adyvip~l~N~  285 (1088)
T KOG4318|consen  257 FVLRGMQEKGVQ-PGSETQADYVIPQLSNG  285 (1088)
T ss_pred             HHHHHHHHhcCC-CCcchhHHHHHhhhcch
Confidence            888888888888 88888888777776644

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.14  E-value=5.2e-09  Score=73.74  Aligned_cols=118  Identities=12%  Similarity=-0.002  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHH
Q 036589           52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA  131 (176)
Q Consensus        52 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~  131 (176)
                      ..+..+...+...|++++|.+.+++.............+..+..++.+.|++++|...|++..+.. +.+...+..+...
T Consensus       100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~  178 (234)
T TIGR02521       100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAEL  178 (234)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHH
Confidence            344444444455555555555555544331111222333444445555555555555555544322 1123344455555


Q ss_pred             HHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccc
Q 036589          132 LLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQV  172 (176)
Q Consensus       132 ~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g  172 (176)
                      +...|++++|.+.+++..+. .+ .+...+..+...+...|
T Consensus       179 ~~~~~~~~~A~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~  217 (234)
T TIGR02521       179 YYLRGQYKDARAYLERYQQT-YN-QTAESLWLGIRIARALG  217 (234)
T ss_pred             HHHcCCHHHHHHHHHHHHHh-CC-CCHHHHHHHHHHHHHHh
Confidence            55555555555555555443 12 23334444444444433

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.11  E-value=6.2e-10  Score=81.82  Aligned_cols=157  Identities=10%  Similarity=-0.064  Sum_probs=104.5

Q ss_pred             CCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036589            4 AKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV   83 (176)
Q Consensus         4 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~   83 (176)
                      +++..+...+..+.+.++++++.++++.+ ...        ...+.+...|..+...+.+.|+.++|.+.+++..+.   
T Consensus       108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~-~~~--------~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---  175 (280)
T PF13429_consen  108 GDPRYLLSALQLYYRLGDYDEAEELLEKL-EEL--------PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---  175 (280)
T ss_dssp             ----------H-HHHTT-HHHHHHHHHHH-HH---------T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---
T ss_pred             cccchhhHHHHHHHHHhHHHHHHHHHHHH-Hhc--------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---
Confidence            45666777788888888888888888886 322        344567888888888888899999999999888876   


Q ss_pred             CC-chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHH
Q 036589           84 IP-EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSN  162 (176)
Q Consensus        84 ~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~  162 (176)
                      .| |....+.++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|...|++.......  |.....
T Consensus       176 ~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~--d~~~~~  252 (280)
T PF13429_consen  176 DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD--DPLWLL  252 (280)
T ss_dssp             -TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT---HHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc--cccccc
Confidence            34 46667788888888888888888887776443 456677788888889999999999999998775554  788888


Q ss_pred             HHHHHhhccccCC
Q 036589          163 LKIIMNDSQVRVT  175 (176)
Q Consensus       163 ~li~~~~~~g~~~  175 (176)
                      .+.+++...|+.+
T Consensus       253 ~~a~~l~~~g~~~  265 (280)
T PF13429_consen  253 AYADALEQAGRKD  265 (280)
T ss_dssp             HHHHHHT------
T ss_pred             ccccccccccccc
Confidence            8888888888865

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.07  E-value=1.6e-08  Score=71.19  Aligned_cols=153  Identities=11%  Similarity=0.005  Sum_probs=122.9

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      .+..+...+...|++++|.+.|++. ...          .+.+...+..+...+...|++++|.+.+++..+. . ..+.
T Consensus        33 ~~~~la~~~~~~~~~~~A~~~~~~~-l~~----------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~-~~~~   99 (234)
T TIGR02521        33 IRVQLALGYLEQGDLEVAKENLDKA-LEH----------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL-N-PNNG   99 (234)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHH-HHh----------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-C-CCCH
Confidence            4667788899999999999999987 221          1235678888999999999999999999999876 2 3345


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhcccCCC-CccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHH
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPSFNV-QRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKII  166 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~  166 (176)
                      ..+..+...+...|++++|.+.|++..+... ......+..+...+...|++++|.+.|.+..+....  +...+..+..
T Consensus       100 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~la~  177 (234)
T TIGR02521       100 DVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ--RPESLLELAE  177 (234)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--ChHHHHHHHH
Confidence            6777889999999999999999999886432 224456777888899999999999999998876543  5667888888


Q ss_pred             HhhccccCC
Q 036589          167 MNDSQVRVT  175 (176)
Q Consensus       167 ~~~~~g~~~  175 (176)
                      .+...|+++
T Consensus       178 ~~~~~~~~~  186 (234)
T TIGR02521       178 LYYLRGQYK  186 (234)
T ss_pred             HHHHcCCHH
Confidence            888888764

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.93  E-value=8.1e-08  Score=78.08  Aligned_cols=152  Identities=9%  Similarity=-0.123  Sum_probs=118.7

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      .|+.+-..+...|++++|+..|+.. .+.          .+-....|..+...+...|++++|...|++..+..  .-+.
T Consensus       333 a~~~lg~~~~~~g~~~eA~~~~~ka-l~l----------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--p~~~  399 (615)
T TIGR00990       333 ALNLRGTFKCLKGKHLEALADLSKS-IEL----------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN--SEDP  399 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH-HHc----------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCH
Confidence            4666667777889999999999987 221          12246678888888999999999999999987662  2345


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHH
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIM  167 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~  167 (176)
                      ..|..+...+...|++++|+..|++..+.. +.+...+..+...+.+.|++++|...|++..+....  +...|+.+-..
T Consensus       400 ~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~--~~~~~~~lg~~  476 (615)
T TIGR00990       400 DIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE--APDVYNYYGEL  476 (615)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHH
Confidence            678888889999999999999999888654 335666777888888999999999999998775433  57788888888


Q ss_pred             hhccccCC
Q 036589          168 NDSQVRVT  175 (176)
Q Consensus       168 ~~~~g~~~  175 (176)
                      +...|+++
T Consensus       477 ~~~~g~~~  484 (615)
T TIGR00990       477 LLDQNKFD  484 (615)
T ss_pred             HHHccCHH
Confidence            88888764

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.93  E-value=4.8e-09  Score=77.13  Aligned_cols=152  Identities=16%  Similarity=0.106  Sum_probs=79.3

Q ss_pred             CCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 036589            6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP   85 (176)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~   85 (176)
                      +..+..++.. ...+++++|.++++.. -+.           .+++..+..++..+.+.++++++.++++.+........
T Consensus        78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~-~~~-----------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~  144 (280)
T PF13429_consen   78 PQDYERLIQL-LQDGDPEEALKLAEKA-YER-----------DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPD  144 (280)
T ss_dssp             -----------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T
T ss_pred             cccccccccc-cccccccccccccccc-ccc-----------ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC
Confidence            4445555555 5677777777776665 221           23566677788888888888888888888776534566


Q ss_pred             chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCc-cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHH
Q 036589           86 EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR-TVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLK  164 (176)
Q Consensus        86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~l  164 (176)
                      +...|..+...+.+.|+.++|++.|++..+..  | |....+.++..+...|+.+++.+++....+.. + .|...|..+
T Consensus       145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~-~~~~~~~~l  220 (280)
T PF13429_consen  145 SARFWLALAEIYEQLGDPDKALRDYRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-P-DDPDLWDAL  220 (280)
T ss_dssp             -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--H-TSCCHCHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-c-CHHHHHHHH
Confidence            77778888888888888888888888887553  5 46777888888888888888888888876655 3 466677777


Q ss_pred             HHHhhccccC
Q 036589          165 IIMNDSQVRV  174 (176)
Q Consensus       165 i~~~~~~g~~  174 (176)
                      ..+|...|+.
T Consensus       221 a~~~~~lg~~  230 (280)
T PF13429_consen  221 AAAYLQLGRY  230 (280)
T ss_dssp             HHHHHHHT-H
T ss_pred             HHHhcccccc
Confidence            7777777664

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.93  E-value=1.1e-07  Score=77.70  Aligned_cols=153  Identities=12%  Similarity=0.008  Sum_probs=83.6

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~   86 (176)
                      ..+..+...+.+.|++++|...|++.. ..          .+.+...+..+...+...|++++|...++.+... ...+.
T Consensus       111 ~a~~~la~~l~~~g~~~~Ai~~l~~Al-~l----------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~-~P~~~  178 (656)
T PRK15174        111 EDVLLVASVLLKSKQYATVADLAEQAW-LA----------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQE-VPPRG  178 (656)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh----------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh-CCCCH
Confidence            345555666666777777777776662 21          1224556666666677777777777766666544 22221


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHH
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKII  166 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~  166 (176)
                      . .+..+ ..+...|++++|+..++.+.+..-.++...+..+...+...|++++|.+.|++..+....  +...+..+-.
T Consensus       179 ~-a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~--~~~~~~~Lg~  254 (656)
T PRK15174        179 D-MIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD--GAALRRSLGL  254 (656)
T ss_pred             H-HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CHHHHHHHHH
Confidence            1 12112 235566666666666666554322223333344445566666666666666666654432  4555555666


Q ss_pred             HhhccccCC
Q 036589          167 MNDSQVRVT  175 (176)
Q Consensus       167 ~~~~~g~~~  175 (176)
                      .|...|+++
T Consensus       255 ~l~~~G~~~  263 (656)
T PRK15174        255 AYYQSGRSR  263 (656)
T ss_pred             HHHHcCCch
Confidence            666666543

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.88  E-value=3.7e-09  Score=52.44  Aligned_cols=33  Identities=30%  Similarity=0.505  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhccccccc
Q 036589          124 SLNTLLNALLTCGKLDRMKELFISFNLKAIAVLD  157 (176)
Q Consensus       124 ~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~  157 (176)
                      +||++|.+|++.|++++|.++|++|.+.|+. ||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~-p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIE-PD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CC
Confidence            5666666666666666666666666666666 65

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PRK12370 invasion protein regulator; Provisional

Probab=98.86  E-value=1.4e-07  Score=75.79  Aligned_cols=151  Identities=15%  Similarity=0.008  Sum_probs=103.3

Q ss_pred             CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589            5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI   84 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~   84 (176)
                      ++..+..+-..+...|++++|...|++. ...          .+.+...|..+..++...|++++|...+++..+..   
T Consensus       337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~A-l~l----------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~---  402 (553)
T PRK12370        337 NPQALGLLGLINTIHSEYIVGSLLFKQA-NLL----------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLD---  402 (553)
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHH-HHh----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---
Confidence            3445666667778889999999999887 221          12256677888888899999999999999988762   


Q ss_pred             Cch-HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCc-cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHH
Q 036589           85 PEE-IIFCNVISFYGRARLLEHALQVFDEMPSFNVQR-TVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSN  162 (176)
Q Consensus        85 ~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~  162 (176)
                      |+. ..+..++..+...|++++|+..+++..+.. .| +...+..+-..+...|++++|.+.+.++......  +....+
T Consensus       403 P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~--~~~~~~  479 (553)
T PRK12370        403 PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT--GLIAVN  479 (553)
T ss_pred             CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch--hHHHHH
Confidence            322 222334445667889999999998876443 23 4445667778888899999999999887554222  334445


Q ss_pred             HHHHHhhccc
Q 036589          163 LKIIMNDSQV  172 (176)
Q Consensus       163 ~li~~~~~~g  172 (176)
                      .+...|+..|
T Consensus       480 ~l~~~~~~~g  489 (553)
T PRK12370        480 LLYAEYCQNS  489 (553)
T ss_pred             HHHHHHhccH
Confidence            5555555544

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.86  E-value=1.1e-07  Score=77.84  Aligned_cols=113  Identities=12%  Similarity=0.032  Sum_probs=58.5

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHH----HHHHHHhcccCCCCccHhHHHHHHHHHH
Q 036589           58 ITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEH----ALQVFDEMPSFNVQRTVKSLNTLLNALL  133 (176)
Q Consensus        58 i~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~p~~~~~~~ll~~~~  133 (176)
                      ..++.+.|++++|...+++..+. . .-+...+..+...|...|++++    |+..|++..+.. +.+...+..+...+.
T Consensus       219 ~~~l~~~g~~~eA~~~~~~al~~-~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~  295 (656)
T PRK15174        219 VDTLCAVGKYQEAIQTGESALAR-G-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALI  295 (656)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhc-C-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHH
Confidence            34444555555555555555543 1 1223344445555555555553    555555555332 223445555666666


Q ss_pred             hcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589          134 TCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       134 ~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      +.|++++|...+++..+....  +...+..+...|.+.|+++
T Consensus       296 ~~g~~~eA~~~l~~al~l~P~--~~~a~~~La~~l~~~G~~~  335 (656)
T PRK15174        296 RTGQNEKAIPLLQQSLATHPD--LPYVRAMYARALRQVGQYT  335 (656)
T ss_pred             HCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHH
Confidence            666666666666666554433  3444555556666665543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.83  E-value=1.3e-07  Score=76.83  Aligned_cols=153  Identities=8%  Similarity=-0.031  Sum_probs=71.8

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      .|..+-..+...|++++|+..|++. ...          .+.+...|..+...+.+.|++++|...|++..+.  ..-+.
T Consensus       401 ~~~~lg~~~~~~g~~~~A~~~~~ka-l~l----------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~  467 (615)
T TIGR00990       401 IYYHRAQLHFIKGEFAQAGKDYQKS-IDL----------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAP  467 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH-HHc----------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCh
Confidence            4444444555555555555555554 111          1123444444555555555555555555555543  12233


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCc-----cH-hHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHH
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQR-----TV-KSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCS  161 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-----~~-~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~  161 (176)
                      ..++.+...+...|++++|+..|++..+..-..     +. ..++..+..+...|++++|.+++++..+....  +...+
T Consensus       468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~--~~~a~  545 (615)
T TIGR00990       468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE--CDIAV  545 (615)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC--cHHHH
Confidence            445555555555666666666655544321100     00 01111122223345666666666655544322  33456


Q ss_pred             HHHHHHhhccccCC
Q 036589          162 NLKIIMNDSQVRVT  175 (176)
Q Consensus       162 ~~li~~~~~~g~~~  175 (176)
                      ..+...+.+.|+++
T Consensus       546 ~~la~~~~~~g~~~  559 (615)
T TIGR00990       546 ATMAQLLLQQGDVD  559 (615)
T ss_pred             HHHHHHHHHccCHH
Confidence            66666666666543

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.83  E-value=4.1e-09  Score=52.27  Aligned_cols=33  Identities=24%  Similarity=0.348  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHhcccCCCCcc
Q 036589           89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRT  121 (176)
Q Consensus        89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~  121 (176)
                      +||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            456666666666666666666666666666655

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.79  E-value=3.2e-07  Score=77.69  Aligned_cols=107  Identities=10%  Similarity=0.033  Sum_probs=59.8

Q ss_pred             hcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHH
Q 036589           63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMK  142 (176)
Q Consensus        63 ~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~  142 (176)
                      ..|++++|...+++..+.   .|+...+..+..++.+.|++++|+..|++..+.. +-+...++.+-..+...|++++|+
T Consensus       588 ~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi  663 (987)
T PRK09782        588 IPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSR  663 (987)
T ss_pred             hCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            335555555555555533   2345555556666666666666666666655443 223444555555666666666666


Q ss_pred             HHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589          143 ELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       143 ~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      +.|++..+..+.  +...+..+-.++...|+++
T Consensus       664 ~~l~~AL~l~P~--~~~a~~nLA~al~~lGd~~  694 (987)
T PRK09782        664 EMLERAHKGLPD--DPALIRQLAYVNQRLDDMA  694 (987)
T ss_pred             HHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHH
Confidence            666666554443  4555666666666665543

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.78  E-value=1.5e-08  Score=50.05  Aligned_cols=32  Identities=25%  Similarity=0.362  Sum_probs=20.9

Q ss_pred             hHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589          123 KSLNTLLNALLTCGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus       123 ~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~  154 (176)
                      .+||++|.+|++.|+++.|.++|++|.+.|+.
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~   33 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVK   33 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            45666666666666666666666666666665

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.77  E-value=2e-07  Score=71.67  Aligned_cols=125  Identities=11%  Similarity=0.125  Sum_probs=107.4

Q ss_pred             CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC-CCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhH
Q 036589           46 PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR-VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS  124 (176)
Q Consensus        46 ~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~  124 (176)
                      +.+.+.....++++.+....+++.+..++...+.... ...-..|..++|+.|.+.|..++++.+++.=...|+-||..+
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            3455778888899999999999999999999887722 233445567999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhcc
Q 036589          125 LNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQ  171 (176)
Q Consensus       125 ~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~  171 (176)
                      ||.||+.+.+.|++..|.++...|...+.- .+..|+..-+.+|.+.
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~-~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEF-DNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHHh
Confidence            999999999999999999999999877776 6778888878777665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.75  E-value=5.7e-07  Score=76.24  Aligned_cols=145  Identities=6%  Similarity=-0.143  Sum_probs=111.2

Q ss_pred             HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHH
Q 036589           13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCN   92 (176)
Q Consensus        13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~   92 (176)
                      ...+...|++++|...|+.+ ..           .+|+...+..+..++.+.|++++|.+.+++..+. . ..+...+..
T Consensus       516 A~al~~~Gr~eeAi~~~rka-~~-----------~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~  581 (987)
T PRK09782        516 AYQAYQVEDYATALAAWQKI-SL-----------HDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR-G-LGDNALYWW  581 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHH-hc-----------cCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CccHHHHHH
Confidence            33445789999999999887 22           1234445666778888999999999999999876 3 223333334


Q ss_pred             HHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccc
Q 036589           93 VISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQV  172 (176)
Q Consensus        93 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g  172 (176)
                      +...+.+.|++++|+..|++..+..  |+...|..+...+.+.|++++|.+.|++..+..+.  +...++.+-..+...|
T Consensus       582 La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd--~~~a~~nLG~aL~~~G  657 (987)
T PRK09782        582 LHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEPN--NSNYQAALGYALWDSG  657 (987)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCC
Confidence            4445556699999999999988654  67888999999999999999999999999888765  6778888888888888


Q ss_pred             cCC
Q 036589          173 RVT  175 (176)
Q Consensus       173 ~~~  175 (176)
                      +++
T Consensus       658 ~~e  660 (987)
T PRK09782        658 DIA  660 (987)
T ss_pred             CHH
Confidence            764

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.75  E-value=1.2e-08  Score=50.37  Aligned_cols=33  Identities=27%  Similarity=0.344  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCc
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQR  120 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p  120 (176)
                      .+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            355555555555555555555555555555544

>PRK12370 invasion protein regulator; Provisional

Probab=98.70  E-value=8.6e-07  Score=71.29  Aligned_cols=141  Identities=13%  Similarity=-0.090  Sum_probs=106.9

Q ss_pred             ccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHH
Q 036589           19 QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYG   98 (176)
Q Consensus        19 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~   98 (176)
                      .+++++|...+++. .+.          -+-+...|..+...+...|++++|...|++..+. . +-+...+..+...+.
T Consensus       317 ~~~~~~A~~~~~~A-l~l----------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l-~-P~~~~a~~~lg~~l~  383 (553)
T PRK12370        317 QNAMIKAKEHAIKA-TEL----------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL-S-PISADIKYYYGWNLF  383 (553)
T ss_pred             chHHHHHHHHHHHH-Hhc----------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHH
Confidence            34578999999987 332          1236778888888999999999999999999976 2 223456777889999


Q ss_pred             hccCHHHHHHHHHhcccCCCCccH-hHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589           99 RARLLEHALQVFDEMPSFNVQRTV-KSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus        99 ~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      ..|++++|+..|++..+..  |+. ..+..++..+...|++++|.+.+++..+...+ -+...+..+-.+|...|+.+
T Consensus       384 ~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p-~~~~~~~~la~~l~~~G~~~  458 (553)
T PRK12370        384 MAGQLEEALQTINECLKLD--PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQ-DNPILLSMQVMFLSLKGKHE  458 (553)
T ss_pred             HCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccc-cCHHHHHHHHHHHHhCCCHH
Confidence            9999999999999998664  442 23344455577789999999999998765433 24556777778888888865

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.67  E-value=3.9e-07  Score=67.28  Aligned_cols=137  Identities=18%  Similarity=0.159  Sum_probs=98.9

Q ss_pred             HHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHH
Q 036589           14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNV   93 (176)
Q Consensus        14 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~l   93 (176)
                      ..+...|++++|+++++..  .              +.......+..|.+.++++.|.+.++.|.+.   ..| .+...+
T Consensus       110 ~i~~~~~~~~~AL~~l~~~--~--------------~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~---~eD-~~l~qL  169 (290)
T PF04733_consen  110 TILFHEGDYEEALKLLHKG--G--------------SLELLALAVQILLKMNRPDLAEKELKNMQQI---DED-SILTQL  169 (290)
T ss_dssp             HHHCCCCHHHHHHCCCTTT--T--------------CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---SCC-HHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcc--C--------------cccHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCc-HHHHHH
Confidence            4566679999999988765  1              5677778899999999999999999999866   233 333445


Q ss_pred             HHHHHh----ccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhh
Q 036589           94 ISFYGR----ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMND  169 (176)
Q Consensus        94 i~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~  169 (176)
                      ..++..    .+.+.+|..+|+++.+ ...+++.+.|.+.-+....|++++|.+++.+..+....  +..|...+|.+..
T Consensus       170 a~awv~l~~g~e~~~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~--~~d~LaNliv~~~  246 (290)
T PF04733_consen  170 AEAWVNLATGGEKYQDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN--DPDTLANLIVCSL  246 (290)
T ss_dssp             HHHHHHHHHTTTCCCHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC--HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCchhHHHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC--CHHHHHHHHHHHH
Confidence            555543    3368999999999874 35678899999999999999999999999998776654  5556555665554


Q ss_pred             cccc
Q 036589          170 SQVR  173 (176)
Q Consensus       170 ~~g~  173 (176)
                      -.|+
T Consensus       247 ~~gk  250 (290)
T PF04733_consen  247 HLGK  250 (290)
T ss_dssp             HTT-
T ss_pred             HhCC
Confidence            4443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.67  E-value=3.2e-08  Score=47.65  Aligned_cols=29  Identities=17%  Similarity=0.394  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q 036589          124 SLNTLLNALLTCGKLDRMKELFISFNLKA  152 (176)
Q Consensus       124 ~~~~ll~~~~~~g~~~~a~~l~~~m~~~~  152 (176)
                      +||++|++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            56666666666666666666666666654

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.66  E-value=8.2e-07  Score=55.42  Aligned_cols=81  Identities=16%  Similarity=0.271  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CCchHHHHHHHHHHHhcc--------CHHHHHHHHHhcccCCCCccHh
Q 036589           53 HYDLIITKLGRAKMFDEMQQILHQLKHDTRV-IPEEIIFCNVISFYGRAR--------LLEHALQVFDEMPSFNVQRTVK  123 (176)
Q Consensus        53 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~  123 (176)
                      +-...|..|...+++.....+|+.+++. |+ .|+..+|+.++.+-++..        .+-+.+.+|+.|...+++|+..
T Consensus        27 t~i~~I~~~~~~~d~N~I~~lYqslkRN-~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~e  105 (120)
T PF08579_consen   27 TQIDNINSCFENEDYNIINPLYQSLKRN-GITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDE  105 (120)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHH
Confidence            4455566666678888888888888888 77 788888888887776643        2445566777777777777777


Q ss_pred             HHHHHHHHHHh
Q 036589          124 SLNTLLNALLT  134 (176)
Q Consensus       124 ~~~~ll~~~~~  134 (176)
                      +||+++..+.+
T Consensus       106 tYnivl~~Llk  116 (120)
T PF08579_consen  106 TYNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHHH
Confidence            77777776655

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.59  E-value=5.3e-08  Score=46.87  Aligned_cols=29  Identities=38%  Similarity=0.520  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHhcccCC
Q 036589           89 IFCNVISFYGRARLLEHALQVFDEMPSFN  117 (176)
Q Consensus        89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~  117 (176)
                      +||++|++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            56666666666666666666666666554

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.59  E-value=3.1e-07  Score=72.55  Aligned_cols=168  Identities=13%  Similarity=0.106  Sum_probs=104.0

Q ss_pred             CCCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCC--------C-------------CCCCCCCCcHHHHHHH---
Q 036589            2 NKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTE--------A-------------PPLKPFRYNLLHYDLI---   57 (176)
Q Consensus         2 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------~-------------~~~~~~~~~~~~y~~l---   57 (176)
                      .+-+|.+|-++-+.|.-+++++.|++.|++. -.-..-.        +             .-...+..|+..||+.   
T Consensus       417 ~~~sPesWca~GNcfSLQkdh~~Aik~f~RA-iQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGl  495 (638)
T KOG1126|consen  417 DPNSPESWCALGNCFSLQKDHDTAIKCFKRA-IQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGL  495 (638)
T ss_pred             CCCCcHHHHHhcchhhhhhHHHHHHHHHHHh-hccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhh
Confidence            4567889999999999999999999999997 2221000        0             0122233344443332   


Q ss_pred             HHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCc
Q 036589           58 ITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGK  137 (176)
Q Consensus        58 i~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~  137 (176)
                      .-.|.|.++++.|+-.|+...+-.  .-+.+....+...+-+.|+.++|+++|++..-.. .-|+.+----...+...++
T Consensus       496 G~vy~Kqek~e~Ae~~fqkA~~IN--P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il~~~~~  572 (638)
T KOG1126|consen  496 GTVYLKQEKLEFAEFHFQKAVEIN--PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASILFSLGR  572 (638)
T ss_pred             hhheeccchhhHHHHHHHhhhcCC--ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHHHhhcc
Confidence            334445555566655555555331  2244455556666677777777777777665333 2355555555666677777


Q ss_pred             HHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589          138 LDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       138 ~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      +++|++.++++++.-+.  +...|-.+...|-+.|+.+
T Consensus       573 ~~eal~~LEeLk~~vP~--es~v~~llgki~k~~~~~~  608 (638)
T KOG1126|consen  573 YVEALQELEELKELVPQ--ESSVFALLGKIYKRLGNTD  608 (638)
T ss_pred             hHHHHHHHHHHHHhCcc--hHHHHHHHHHHHHHHccch
Confidence            88888888887776544  5667777777777766543

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.58  E-value=1.7e-06  Score=54.06  Aligned_cols=79  Identities=8%  Similarity=0.026  Sum_probs=68.9

Q ss_pred             HHHHHHHhccCHHHHHHHHHhcccCCC-CccHhHHHHHHHHHHhcCc--------HHHHHHHHHHHHhccccccchHHHH
Q 036589           92 NVISFYGRARLLEHALQVFDEMPSFNV-QRTVKSLNTLLNALLTCGK--------LDRMKELFISFNLKAIAVLDGLCSN  162 (176)
Q Consensus        92 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g~--------~~~a~~l~~~m~~~~~~~p~~~t~~  162 (176)
                      .-|.-+...+++...-.+|+.+++.|+ .|+...||.+|.+.+++..        +-+.+.+|.+|...++. |+..||+
T Consensus        30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lK-P~~etYn  108 (120)
T PF08579_consen   30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLK-PNDETYN  108 (120)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccC-CcHHHHH
Confidence            455566666999999999999999999 9999999999999988643        55678999999999999 9999999


Q ss_pred             HHHHHhhcc
Q 036589          163 LKIIMNDSQ  171 (176)
Q Consensus       163 ~li~~~~~~  171 (176)
                      .++..+.+.
T Consensus       109 ivl~~Llkg  117 (120)
T PF08579_consen  109 IVLGSLLKG  117 (120)
T ss_pred             HHHHHHHHh
Confidence            999988653

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.54  E-value=1e-05  Score=53.71  Aligned_cols=109  Identities=8%  Similarity=-0.074  Sum_probs=89.6

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHH
Q 036589           51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLN  130 (176)
Q Consensus        51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~  130 (176)
                      +..+......+...|++++|...|+..... . ..+...|..+-.++.+.|++++|+..|+...+.. +.+...+..+-.
T Consensus        24 p~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~  100 (144)
T PRK15359         24 PETVYASGYASWQEGDYSRAVIDFSWLVMA-Q-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGV  100 (144)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence            334556788889999999999999999876 2 3467788889999999999999999999999654 457888999999


Q ss_pred             HHHhcCcHHHHHHHHHHHHhccccccchHHHHHH
Q 036589          131 ALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLK  164 (176)
Q Consensus       131 ~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~l  164 (176)
                      ++...|++++|...|+...+....  +...|...
T Consensus       101 ~l~~~g~~~eAi~~~~~Al~~~p~--~~~~~~~~  132 (144)
T PRK15359        101 CLKMMGEPGLAREAFQTAIKMSYA--DASWSEIR  132 (144)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHH
Confidence            999999999999999998876554  44444433

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.50  E-value=1.1e-05  Score=70.19  Aligned_cols=146  Identities=10%  Similarity=-0.010  Sum_probs=111.4

Q ss_pred             HHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHH
Q 036589           11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIF   90 (176)
Q Consensus        11 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~   90 (176)
                      .+.+.+...|+.++|.++++.- +.              +...+..+...+.+.|++++|...|++..+. . +-+...+
T Consensus       578 ~~a~~l~~~G~~~eA~~~l~~~-p~--------------~~~~~~~La~~~~~~g~~~~A~~~y~~al~~-~-P~~~~a~  640 (1157)
T PRK11447        578 ETANRLRDSGKEAEAEALLRQQ-PP--------------STRIDLTLADWAQQRGDYAAARAAYQRVLTR-E-PGNADAR  640 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhC-CC--------------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-CCCHHHH
Confidence            3456788899999999998843 22              4556677899999999999999999999987 2 3356788


Q ss_pred             HHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc-c---chHHHHHHHH
Q 036589           91 CNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAV-L---DGLCSNLKII  166 (176)
Q Consensus        91 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~-p---~~~t~~~li~  166 (176)
                      ..+...|...|++++|++.|+...+.. +.+...+..+...+...|++++|.++|+.+....... |   +...+..+..
T Consensus       641 ~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~  719 (1157)
T PRK11447        641 LGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAAR  719 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHH
Confidence            889999999999999999999887542 2345556677788899999999999999987653320 2   2345555566


Q ss_pred             HhhccccC
Q 036589          167 MNDSQVRV  174 (176)
Q Consensus       167 ~~~~~g~~  174 (176)
                      .+...|+.
T Consensus       720 ~~~~~G~~  727 (1157)
T PRK11447        720 FEAQTGQP  727 (1157)
T ss_pred             HHHHcCCH
Confidence            66666654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.46  E-value=1.5e-05  Score=66.54  Aligned_cols=147  Identities=7%  Similarity=-0.035  Sum_probs=110.5

Q ss_pred             HHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHH
Q 036589           10 FRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEII   89 (176)
Q Consensus        10 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~   89 (176)
                      ...+......|+.++|+++|......           -+.+...+..+..++.+.|++++|.++|++..+..  +.+...
T Consensus        19 ~d~~~ia~~~g~~~~A~~~~~~~~~~-----------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a   85 (765)
T PRK10049         19 ADWLQIALWAGQDAEVITVYNRYRVH-----------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDY   85 (765)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH
Confidence            44567778899999999999988321           13356678889999999999999999999988662  223445


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhh
Q 036589           90 FCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMND  169 (176)
Q Consensus        90 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~  169 (176)
                      +..+...+.+.|++++|+..+++..+.. +.+.. +..+...+...|+.++|+..+++..+..+.  +...+..+..++.
T Consensus        86 ~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~--~~~~~~~la~~l~  161 (765)
T PRK10049         86 QRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ--TQQYPTEYVQALR  161 (765)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Confidence            6678888899999999999999988652 33445 778888888999999999999999887665  4455555666665


Q ss_pred             cccc
Q 036589          170 SQVR  173 (176)
Q Consensus       170 ~~g~  173 (176)
                      ..|+
T Consensus       162 ~~~~  165 (765)
T PRK10049        162 NNRL  165 (765)
T ss_pred             HCCC
Confidence            5444

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.46  E-value=3.1e-06  Score=62.43  Aligned_cols=148  Identities=6%  Similarity=-0.049  Sum_probs=121.1

Q ss_pred             HHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHH
Q 036589           11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIF   90 (176)
Q Consensus        11 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~   90 (176)
                      .+-+.|.+.|.+.+|.+.|+.-.+.            .|-+.+|-.|-..|.+...+..|..++.+-...  +.-|+...
T Consensus       228 Q~gkCylrLgm~r~AekqlqssL~q------------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l  293 (478)
T KOG1129|consen  228 QMGKCYLRLGMPRRAEKQLQSSLTQ------------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYL  293 (478)
T ss_pred             HHHHHHHHhcChhhhHHHHHHHhhc------------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhh
Confidence            4667889999999999999886233            345777878999999999999999999998876  33344444


Q ss_pred             HHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhc
Q 036589           91 CNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDS  170 (176)
Q Consensus        91 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~  170 (176)
                      .-..+.+...++.++|.++|+...+.. ..++....++-..|.-.++.+-|++.+++..+.|+.  +..-|+.+--+|.-
T Consensus       294 ~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~--speLf~NigLCC~y  370 (478)
T KOG1129|consen  294 LGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ--SPELFCNIGLCCLY  370 (478)
T ss_pred             hhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC--ChHHHhhHHHHHHh
Confidence            567788888999999999999888543 457777778888999999999999999999999998  88888888877777


Q ss_pred             cccCC
Q 036589          171 QVRVT  175 (176)
Q Consensus       171 ~g~~~  175 (176)
                      .+++|
T Consensus       371 aqQ~D  375 (478)
T KOG1129|consen  371 AQQID  375 (478)
T ss_pred             hcchh
Confidence            77665

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.46  E-value=1.5e-06  Score=68.46  Aligned_cols=165  Identities=15%  Similarity=0.044  Sum_probs=119.0

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHH-HHHHHHHHHHhcCChHHHHHHHHHHhhcCC--CC
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLL-HYDLIITKLGRAKMFDEMQQILHQLKHDTR--VI   84 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~y~~li~~~~~~g~~~~a~~~~~~m~~~~g--~~   84 (176)
                      +++.|-.+|.+.|++++|...+++...-..   .. .....|.+. .++.+...|+..+++++|..+++...+..-  +.
T Consensus       285 ~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~---~~-~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g  360 (508)
T KOG1840|consen  285 TLNNLAVLYYKQGKFAEAEEYCERALEIYE---KL-LGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG  360 (508)
T ss_pred             HHHHHHHHHhccCChHHHHHHHHHHHHHHH---Hh-hccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence            677788899999999988777766411100   00 011123333 467778888899999999998887665411  22


Q ss_pred             C----chHHHHHHHHHHHhccCHHHHHHHHHhcccC----C---CCccHhHHHHHHHHHHhcCcHHHHHHHHHHH----H
Q 036589           85 P----EEIIFCNVISFYGRARLLEHALQVFDEMPSF----N---VQRTVKSLNTLLNALLTCGKLDRMKELFISF----N  149 (176)
Q Consensus        85 ~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~---~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m----~  149 (176)
                      +    ...+++.|-..|...|++.+|+++|++..+.    +   ..-....+|.|-..|.+.+.+.+|.++|.+-    +
T Consensus       361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~  440 (508)
T KOG1840|consen  361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK  440 (508)
T ss_pred             ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence            2    2468899999999999999999999987631    1   1223567888899999999999999999874    4


Q ss_pred             hccccccc-hHHHHHHHHHhhccccCCC
Q 036589          150 LKAIAVLD-GLCSNLKIIMNDSQVRVTG  176 (176)
Q Consensus       150 ~~~~~~p~-~~t~~~li~~~~~~g~~~~  176 (176)
                      ..|..+|+ ..+|..|...|.+.|++++
T Consensus       441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~  468 (508)
T KOG1840|consen  441 LCGPDHPDVTYTYLNLAALYRAQGNYEA  468 (508)
T ss_pred             HhCCCCCchHHHHHHHHHHHHHcccHHH
Confidence            45555444 6789999999999999863

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.45  E-value=1.2e-05  Score=69.99  Aligned_cols=146  Identities=11%  Similarity=-0.022  Sum_probs=89.7

Q ss_pred             HHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHH
Q 036589           10 FRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEII   89 (176)
Q Consensus        10 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~   89 (176)
                      ..+...+...|++++|++.|++.. ..          .+-+...+..+...|.+.|++++|...++++.+...-.|+  .
T Consensus       465 ~~~a~~~~~~g~~~eA~~~~~~Al-~~----------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~--~  531 (1157)
T PRK11447        465 AQQAEALENQGKWAQAAELQRQRL-AL----------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE--Q  531 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHH-Hh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH--H
Confidence            345567778999999999999972 21          1225667788899999999999999999998765222221  1


Q ss_pred             HHHH--------------------------------------------HHHHHhccCHHHHHHHHHhcccCCCCccHhHH
Q 036589           90 FCNV--------------------------------------------ISFYGRARLLEHALQVFDEMPSFNVQRTVKSL  125 (176)
Q Consensus        90 ~~~l--------------------------------------------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  125 (176)
                      +..+                                            ...+...|+.++|+++++.     .+.+...+
T Consensus       532 ~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~  606 (1157)
T PRK11447        532 VYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRID  606 (1157)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHH
Confidence            1111                                            2223333444444444331     12333445


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589          126 NTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       126 ~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      ..+...+.+.|++++|.+.|++..+..+.  +...+..+...|...|+++
T Consensus       607 ~~La~~~~~~g~~~~A~~~y~~al~~~P~--~~~a~~~la~~~~~~g~~~  654 (1157)
T PRK11447        607 LTLADWAQQRGDYAAARAAYQRVLTREPG--NADARLGLIEVDIAQGDLA  654 (1157)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHH
Confidence            55666666777777777777776665443  5566666666666666543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.45  E-value=1e-05  Score=57.92  Aligned_cols=158  Identities=8%  Similarity=-0.120  Sum_probs=111.3

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      .+..+...+.+.|++++|...|+++ ....       +.-+.....+..+..++.+.|++++|...++++.+...-.+..
T Consensus        35 ~~~~~g~~~~~~~~~~~A~~~~~~~-~~~~-------p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~  106 (235)
T TIGR03302        35 ELYEEAKEALDSGDYTEAIKYFEAL-ESRY-------PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA  106 (235)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH-HHhC-------CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence            4556677888999999999999987 3321       1111123467778899999999999999999998763222221


Q ss_pred             -HHHHHHHHHHHhc--------cCHHHHHHHHHhcccCCCCccHh-HH-----------------HHHHHHHHhcCcHHH
Q 036589           88 -IIFCNVISFYGRA--------RLLEHALQVFDEMPSFNVQRTVK-SL-----------------NTLLNALLTCGKLDR  140 (176)
Q Consensus        88 -~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~p~~~-~~-----------------~~ll~~~~~~g~~~~  140 (176)
                       ..+..+-.++...        |++++|.+.|+++.+..  |+.. .+                 ..+...+.+.|++.+
T Consensus       107 ~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~  184 (235)
T TIGR03302       107 DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVA  184 (235)
T ss_pred             HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence             2344455555544        78999999999987543  3321 11                 134566788899999


Q ss_pred             HHHHHHHHHhcccccc-chHHHHHHHHHhhccccCC
Q 036589          141 MKELFISFNLKAIAVL-DGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       141 a~~l~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~  175 (176)
                      |...+.+..+.....| ....+..+..++...|+++
T Consensus       185 A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~  220 (235)
T TIGR03302       185 AINRFETVVENYPDTPATEEALARLVEAYLKLGLKD  220 (235)
T ss_pred             HHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHH
Confidence            9999999887643212 4678889999999998875

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=5.6e-06  Score=63.45  Aligned_cols=155  Identities=12%  Similarity=0.028  Sum_probs=109.9

Q ss_pred             CCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 036589            3 KAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR   82 (176)
Q Consensus         3 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g   82 (176)
                      |-.+.|..++-+.|+-.+++++|...|++..+-           .+-....|+.|.+-|...++...|..-|....+-  
T Consensus       327 KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL-----------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--  393 (559)
T KOG1155|consen  327 KYRPETCCIIANYYSLRSEHEKAVMYFKRALKL-----------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--  393 (559)
T ss_pred             cCCccceeeehhHHHHHHhHHHHHHHHHHHHhc-----------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--
Confidence            345677788888999999999999999987221           1236678888888888888888888888887754  


Q ss_pred             CCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHH
Q 036589           83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSN  162 (176)
Q Consensus        83 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~  162 (176)
                      .+.|-..|-.|-++|.-.+...-|+-.|++..... +-|+..|.+|-.+|.+.++.++|++.|.+....|-.  +...+.
T Consensus       394 ~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt--e~~~l~  470 (559)
T KOG1155|consen  394 NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT--EGSALV  470 (559)
T ss_pred             CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc--chHHHH
Confidence            34566677777777777777777777777666443 346677777777777777777777777776665543  555666


Q ss_pred             HHHHHhhcccc
Q 036589          163 LKIIMNDSQVR  173 (176)
Q Consensus       163 ~li~~~~~~g~  173 (176)
                      .|.+.|-+.++
T Consensus       471 ~LakLye~l~d  481 (559)
T KOG1155|consen  471 RLAKLYEELKD  481 (559)
T ss_pred             HHHHHHHHHHh
Confidence            66666555443

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=98.41  E-value=5.2e-06  Score=57.88  Aligned_cols=84  Identities=11%  Similarity=0.135  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHh-----cCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccC-----------------HHHHHHH
Q 036589           52 LHYDLIITKLGR-----AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL-----------------LEHALQV  109 (176)
Q Consensus        52 ~~y~~li~~~~~-----~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~-----------------~~~a~~~  109 (176)
                      .+|..+++.+.+     .|+.+-...-++.|.+- |+.-|..+|+.||+.+-+ |.                 -+-|+++
T Consensus        48 ~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~ef-gv~kDL~~Y~~LLDvFPK-g~fvp~n~fQ~~F~hyp~Qq~c~i~l  125 (228)
T PF06239_consen   48 ATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEF-GVEKDLEVYKALLDVFPK-GKFVPRNFFQAEFMHYPRQQECAIDL  125 (228)
T ss_pred             HHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHc-CCcccHHHHHHHHHhCCC-CCcccccHHHHHhccCcHHHHHHHHH
Confidence            344444444442     24444444444455544 555555555555555543 21                 1334455


Q ss_pred             HHhcccCCCCccHhHHHHHHHHHHhcCc
Q 036589          110 FDEMPSFNVQRTVKSLNTLLNALLTCGK  137 (176)
Q Consensus       110 ~~~m~~~~~~p~~~~~~~ll~~~~~~g~  137 (176)
                      +++|...|+.||..++..|++.|++.+.
T Consensus       126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  126 LEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            5555555555555555555555544443

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.40  E-value=8.2e-06  Score=62.57  Aligned_cols=122  Identities=12%  Similarity=0.084  Sum_probs=92.0

Q ss_pred             HHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHH
Q 036589           11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIF   90 (176)
Q Consensus        11 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~   90 (176)
                      .|+..+...++++.|..+|+++ ...           .|+  ....+...+...++-.+|.+++++..+.  .+-+....
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L-~~~-----------~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL  237 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKL-RER-----------DPE--VAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELL  237 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHH-Hhc-----------CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHH
Confidence            3455666678899999999998 332           134  3445777777788888888888888865  23456666


Q ss_pred             HHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 036589           91 CNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN  149 (176)
Q Consensus        91 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~  149 (176)
                      ..-.+.+.+.++++.|+.+.+++.+.. +-+..+|..|..+|.+.|+++.|+..++.+.
T Consensus       238 ~~Qa~fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  238 NLQAEFLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            667777888899999999999888653 2345688899999999999999998888775

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.38  E-value=9.4e-06  Score=64.54  Aligned_cols=148  Identities=11%  Similarity=0.071  Sum_probs=83.3

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc-
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE-   86 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~-   86 (176)
                      .|+.|..++-..|++.+|.+.++.. ..-          .+--..+.+.|...+.+.|.++.|.++|....+-   .|. 
T Consensus       322 Ay~NlanALkd~G~V~ea~~cYnka-L~l----------~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v---~p~~  387 (966)
T KOG4626|consen  322 AYNNLANALKDKGSVTEAVDCYNKA-LRL----------CPNHADAMNNLGNIYREQGKIEEATRLYLKALEV---FPEF  387 (966)
T ss_pred             HHhHHHHHHHhccchHHHHHHHHHH-HHh----------CCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh---Chhh
Confidence            5666666666666666666666664 111          1113445566666666666666666666665543   222 


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccH-hHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV-KSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI  165 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li  165 (176)
                      ....|.|...|-..|++++|+..|++..+  ++|+. ..|+.+-..|-..|+++.|.+.+.+..+.+..  =...++.|.
T Consensus       388 aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt--~AeAhsNLa  463 (966)
T KOG4626|consen  388 AAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT--FAEAHSNLA  463 (966)
T ss_pred             hhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH--HHHHHhhHH
Confidence            34456666666667777777777766653  23442 44555555566666666666666555544332  344445555


Q ss_pred             HHhhcccc
Q 036589          166 IMNDSQVR  173 (176)
Q Consensus       166 ~~~~~~g~  173 (176)
                      ..|-.+|.
T Consensus       464 si~kDsGn  471 (966)
T KOG4626|consen  464 SIYKDSGN  471 (966)
T ss_pred             HHhhccCC
Confidence            55544444

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.37  E-value=1.7e-05  Score=56.50  Aligned_cols=123  Identities=12%  Similarity=-0.011  Sum_probs=76.7

Q ss_pred             HHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHH
Q 036589           12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFC   91 (176)
Q Consensus        12 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~   91 (176)
                      ......+.|++..|+..|.+. ..          .-++|...|+.+.-+|-+.|++++|..-|.+..+-.  .-+....|
T Consensus       106 ~gk~~~~~g~~~~A~~~~rkA-~~----------l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--~~~p~~~n  172 (257)
T COG5010         106 QGKNQIRNGNFGEAVSVLRKA-AR----------LAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELA--PNEPSIAN  172 (257)
T ss_pred             HHHHHHHhcchHHHHHHHHHH-hc----------cCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc--cCCchhhh
Confidence            455666677777777777766 22          234566777777777777777777777666666541  22334456


Q ss_pred             HHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 036589           92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF  148 (176)
Q Consensus        92 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m  148 (176)
                      .+.-.|.-.|+++.|..++......+ .-|+..-..+.-.....|++++|.++...-
T Consensus       173 Nlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e  228 (257)
T COG5010         173 NLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQE  228 (257)
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhcccc
Confidence            66666666777777777776665443 225555666666666777777776665443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.37  E-value=2.3e-05  Score=54.82  Aligned_cols=116  Identities=11%  Similarity=0.046  Sum_probs=91.7

Q ss_pred             CCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHH-HHhccC--HHHHHHHHHhcccCCCCccHhH
Q 036589           48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISF-YGRARL--LEHALQVFDEMPSFNVQRTVKS  124 (176)
Q Consensus        48 ~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~-~~~~g~--~~~a~~~~~~m~~~~~~p~~~~  124 (176)
                      +.+...|..+...|...|++++|...|++..+..  .-+...+..+..+ +...|+  .++|.+++++..+.. +-+...
T Consensus        70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~a  146 (198)
T PRK10370         70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTA  146 (198)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhH
Confidence            4588899999999999999999999999999762  2356666777776 467777  599999999999765 337788


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhh
Q 036589          125 LNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMND  169 (176)
Q Consensus       125 ~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~  169 (176)
                      +..+-..+...|++++|...++++.+...+  +..-+.. |.+-.
T Consensus       147 l~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~--~~~r~~~-i~~i~  188 (198)
T PRK10370        147 LMLLASDAFMQADYAQAIELWQKVLDLNSP--RVNRTQL-VESIN  188 (198)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CccHHHH-HHHHH
Confidence            888999999999999999999999887654  4444433 35533

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.37  E-value=2e-05  Score=58.32  Aligned_cols=144  Identities=12%  Similarity=0.044  Sum_probs=102.4

Q ss_pred             HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHH---HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 036589            9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLH---YDLIITKLGRAKMFDEMQQILHQLKHDTRVIP   85 (176)
Q Consensus         9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~   85 (176)
                      ....+..|.+.++++.|.+.++.| +...           .|...   ..+.+........+.+|..+|+++...  +.+
T Consensus       134 ~al~Vqi~L~~~R~dlA~k~l~~~-~~~~-----------eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--~~~  199 (290)
T PF04733_consen  134 LALAVQILLKMNRPDLAEKELKNM-QQID-----------EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--FGS  199 (290)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHH-HCCS-----------CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--S--
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH-HhcC-----------CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--cCC
Confidence            345688999999999999999999 4432           23332   222233333345699999999998876  567


Q ss_pred             chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcH-HHHHHHHHHHHhccccccchHHHHHH
Q 036589           86 EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKL-DRMKELFISFNLKAIAVLDGLCSNLK  164 (176)
Q Consensus        86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~a~~l~~~m~~~~~~~p~~~t~~~l  164 (176)
                      +..+.|.+..+....|++++|.+++++..+.. +-+..+...++.+....|+. +.+.+++..++.....+|-...+...
T Consensus       200 t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~~~~  278 (290)
T PF04733_consen  200 TPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDLAEK  278 (290)
T ss_dssp             SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            88899999999999999999999999987544 34667777788888888887 77888999988766554555555544


Q ss_pred             HHH
Q 036589          165 IIM  167 (176)
Q Consensus       165 i~~  167 (176)
                      =..
T Consensus       279 ~~~  281 (290)
T PF04733_consen  279 EAE  281 (290)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.34  E-value=2.4e-06  Score=65.83  Aligned_cols=122  Identities=8%  Similarity=-0.011  Sum_probs=97.7

Q ss_pred             CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589            5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI   84 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~   84 (176)
                      +++....+++.+....+++.+..++.+.....        .....-..+..++|+.|.+.|..+.+..+++.=... |+=
T Consensus        65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~--------~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~y-GiF  135 (429)
T PF10037_consen   65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSP--------NCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQY-GIF  135 (429)
T ss_pred             cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCc--------ccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhc-ccC
Confidence            34556677888888888999999988883332        122222334458999999999999999999998888 999


Q ss_pred             CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhc
Q 036589           85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTC  135 (176)
Q Consensus        85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  135 (176)
                      ||..++|.||+.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus       136 ~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  136 PDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             CChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            999999999999999999999999999988666666777777777766665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.33  E-value=5.3e-05  Score=53.30  Aligned_cols=148  Identities=12%  Similarity=-0.069  Sum_probs=112.5

Q ss_pred             HHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHH
Q 036589           11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIF   90 (176)
Q Consensus        11 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~   90 (176)
                      -|--.|.+.|+...|..-+++..+.           -+-+..+|..+...|.+.|+.+.|.+-|++..+.  -+-+..+.
T Consensus        40 qLal~YL~~gd~~~A~~nlekAL~~-----------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVL  106 (250)
T COG3063          40 QLALGYLQQGDYAQAKKNLEKALEH-----------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVL  106 (250)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh-----------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchh
Confidence            3456788999999999999998322           1336778999999999999999999999998865  23344566


Q ss_pred             HHHHHHHHhccCHHHHHHHHHhcccCCC-CccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhh
Q 036589           91 CNVISFYGRARLLEHALQVFDEMPSFNV-QRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMND  169 (176)
Q Consensus        91 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~  169 (176)
                      |.--..+|..|++++|.+.|+.....-. .--..+|..+--+..+.|+.+.|.+.|++-.+....  ...+.-.+.....
T Consensus       107 NNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~--~~~~~l~~a~~~~  184 (250)
T COG3063         107 NNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ--FPPALLELARLHY  184 (250)
T ss_pred             hhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC--CChHHHHHHHHHH
Confidence            8888889999999999999998775321 123567888888899999999999999998876554  3344455555555


Q ss_pred             cccc
Q 036589          170 SQVR  173 (176)
Q Consensus       170 ~~g~  173 (176)
                      ..|+
T Consensus       185 ~~~~  188 (250)
T COG3063         185 KAGD  188 (250)
T ss_pred             hccc
Confidence            5444

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.32  E-value=9.3e-05  Score=62.00  Aligned_cols=145  Identities=8%  Similarity=-0.039  Sum_probs=92.3

Q ss_pred             HHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHH
Q 036589           11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIF   90 (176)
Q Consensus        11 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~   90 (176)
                      .++..+...|+.++|+..+++.. ..          -.......-.+...+...|++++|.++|+++.+...  -+...+
T Consensus        73 dll~l~~~~G~~~~A~~~~eka~-~p----------~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP--~n~~~l  139 (822)
T PRK14574         73 DWLQIAGWAGRDQEVIDVYERYQ-SS----------MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDP--TNPDLI  139 (822)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhc-cC----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHH
Confidence            66777777788888888887772 21          111233333335577777888888888888887621  223444


Q ss_pred             HHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhc
Q 036589           91 CNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDS  170 (176)
Q Consensus        91 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~  170 (176)
                      ..++..|.+.++.++|++.++++...  .|+...+-.++..+...++..+|++.++++.+..+.  +...+..++.+..+
T Consensus       140 ~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~--n~e~~~~~~~~l~~  215 (822)
T PRK14574        140 SGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPT--SEEVLKNHLEILQR  215 (822)
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Confidence            56677778888888888888887754  355555544444444455565688888888776543  55566666665555


Q ss_pred             cc
Q 036589          171 QV  172 (176)
Q Consensus       171 ~g  172 (176)
                      .|
T Consensus       216 ~~  217 (822)
T PRK14574        216 NR  217 (822)
T ss_pred             cC
Confidence            44

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.32  E-value=7.8e-05  Score=55.42  Aligned_cols=126  Identities=13%  Similarity=-0.084  Sum_probs=94.8

Q ss_pred             HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC-ch
Q 036589            9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP-EE   87 (176)
Q Consensus         9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~-~~   87 (176)
                      |..+-..|.+.|+.++|...|++. ...          .+.+...|+.+...+...|++++|...|+...+.   .| +.
T Consensus        67 ~~~~g~~~~~~g~~~~A~~~~~~A-l~l----------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l---~P~~~  132 (296)
T PRK11189         67 HYERGVLYDSLGLRALARNDFSQA-LAL----------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL---DPTYN  132 (296)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHH-HHc----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCH
Confidence            556666788899999999999987 221          1336788999999999999999999999999865   33 35


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL  150 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~  150 (176)
                      ..|..+..++...|++++|++.|+...+..  |+..........+...++.++|.+.|.+...
T Consensus       133 ~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~  193 (296)
T PRK11189        133 YAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE  193 (296)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            677778888899999999999999887643  4433223333334557789999999976543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.32  E-value=8.9e-05  Score=48.23  Aligned_cols=100  Identities=10%  Similarity=0.064  Sum_probs=84.1

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL  129 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  129 (176)
                      +......+...+...|++++|.+.++..... + ..+...+..+...|.+.|++++|...|+...+.. +.+...+..+-
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la   92 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAY-D-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAA   92 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-C-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHH
Confidence            4455667788888999999999999999876 2 3467788889999999999999999999887654 45677788888


Q ss_pred             HHHHhcCcHHHHHHHHHHHHhcc
Q 036589          130 NALLTCGKLDRMKELFISFNLKA  152 (176)
Q Consensus       130 ~~~~~~g~~~~a~~l~~~m~~~~  152 (176)
                      ..+...|++++|.+.|+...+..
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        93 ECLLALGEPESALKALDLAIEIC  115 (135)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhc
Confidence            89999999999999999988754

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.31  E-value=3.2e-05  Score=54.38  Aligned_cols=154  Identities=11%  Similarity=-0.042  Sum_probs=121.0

Q ss_pred             CCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 036589            6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP   85 (176)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~   85 (176)
                      +.+|..+...|-+.|+.+.|.+.|+...+..           +-+-.+.|.-...+|..|++++|+..|++........-
T Consensus        69 ~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-----------p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~  137 (250)
T COG3063          69 YLAHLVRAHYYQKLGENDLADESYRKALSLA-----------PNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGE  137 (250)
T ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-----------CCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCC
Confidence            4489999999999999999999999972221           22667888888999999999999999999998834444


Q ss_pred             chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589           86 EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI  165 (176)
Q Consensus        86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li  165 (176)
                      -..+|..+.-|..+.|+.+.|...|+.-.+.. +-...+.-.+.....+.|++..|...++.....+.  ++..+.-..|
T Consensus       138 ~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~--~~A~sL~L~i  214 (250)
T COG3063         138 PSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQQRGG--AQAESLLLGI  214 (250)
T ss_pred             cchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHHhccc--ccHHHHHHHH
Confidence            56788899999999999999999999888654 22455677788888999999999999998876655  4555555555


Q ss_pred             HHhhcccc
Q 036589          166 IMNDSQVR  173 (176)
Q Consensus       166 ~~~~~~g~  173 (176)
                      ..--+.|+
T Consensus       215 riak~~gd  222 (250)
T COG3063         215 RIAKRLGD  222 (250)
T ss_pred             HHHHHhcc
Confidence            44444443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.31  E-value=6.3e-05  Score=62.93  Aligned_cols=154  Identities=10%  Similarity=-0.112  Sum_probs=112.3

Q ss_pred             HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCC--CCCCCCCc---HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036589            9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAP--PLKPFRYN---LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV   83 (176)
Q Consensus         9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~   83 (176)
                      ...+..++...|++++|.++++.+ .........  ....-.|+   ...+..+...+...|++++|++.++++...  .
T Consensus       313 ~~~L~~a~~~~g~~~eA~~~l~~~-~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~  389 (765)
T PRK10049        313 LADLFYSLLESENYPGALTVTAHT-INNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--A  389 (765)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHH-hhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence            455666788899999999999888 332100000  00011233   335667788889999999999999999876  3


Q ss_pred             CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHH
Q 036589           84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNL  163 (176)
Q Consensus        84 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~  163 (176)
                      +-+...+..+...+...|++++|++.+++..+.. +-+...+-.....+.+.|++++|..+++++.+.....|.+.-+.-
T Consensus       390 P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~  468 (765)
T PRK10049        390 PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLAR  468 (765)
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4456788899999999999999999999988654 234666677777899999999999999999886555355555554


Q ss_pred             HHH
Q 036589          164 KII  166 (176)
Q Consensus       164 li~  166 (176)
                      ..+
T Consensus       469 ~~~  471 (765)
T PRK10049        469 ARD  471 (765)
T ss_pred             HHH
Confidence            443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.31  E-value=3.7e-05  Score=51.02  Aligned_cols=127  Identities=13%  Similarity=0.081  Sum_probs=91.2

Q ss_pred             HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch-
Q 036589            9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE-   87 (176)
Q Consensus         9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~-   87 (176)
                      |..++..+ ..++...+...++.+....        ++-.......-.+...+...|++++|...|+++... ...+.. 
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--------~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~   84 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--------PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELK   84 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHHC--------CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHH
Confidence            44555555 4888888888888883332        222222334444557788899999999999999987 433332 


Q ss_pred             -HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHH
Q 036589           88 -IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFIS  147 (176)
Q Consensus        88 -~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~  147 (176)
                       ...-.|...+...|++++|+..++......  .....+...-+.|.+.|+.++|...|+.
T Consensus        85 ~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   85 PLARLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence             344457888899999999999998865443  3445566777999999999999999875

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.30  E-value=4.5e-06  Score=66.29  Aligned_cols=145  Identities=12%  Similarity=-0.007  Sum_probs=103.1

Q ss_pred             HHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHH
Q 036589           14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNV   93 (176)
Q Consensus        14 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~l   93 (176)
                      -.|-.+|.++.|+..+++. .+..       ++   =+..|+.|..++...|++.+|.+.|++...-  ..-..-..+.|
T Consensus       294 ~iYyeqG~ldlAI~~Ykra-l~~~-------P~---F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NL  360 (966)
T KOG4626|consen  294 CIYYEQGLLDLAIDTYKRA-LELQ-------PN---FPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNL  360 (966)
T ss_pred             EEEeccccHHHHHHHHHHH-HhcC-------CC---chHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHH
Confidence            3345567777777777776 2221       22   3567899999999999999999999988865  22234466779


Q ss_pred             HHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccc-hHHHHHHHHHhhccc
Q 036589           94 ISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLD-GLCSNLKIIMNDSQV  172 (176)
Q Consensus        94 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~-~~t~~~li~~~~~~g  172 (176)
                      -..|.+.|.+++|..+|....+.. +--...+|.|...|-..|++++|+..+++...-  . |+ ...|+.|=+.|-..|
T Consensus       361 gni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~-P~fAda~~NmGnt~ke~g  436 (966)
T KOG4626|consen  361 GNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--K-PTFADALSNMGNTYKEMG  436 (966)
T ss_pred             HHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--C-chHHHHHHhcchHHHHhh
Confidence            999999999999999998877532 123456888999999999999999999987653  3 43 455666666665555


Q ss_pred             cCC
Q 036589          173 RVT  175 (176)
Q Consensus       173 ~~~  175 (176)
                      +++
T Consensus       437 ~v~  439 (966)
T KOG4626|consen  437 DVS  439 (966)
T ss_pred             hHH
Confidence            543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.30  E-value=7.7e-05  Score=62.50  Aligned_cols=151  Identities=8%  Similarity=-0.001  Sum_probs=109.2

Q ss_pred             HHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC----CCCc
Q 036589           11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR----VIPE   86 (176)
Q Consensus        11 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g----~~~~   86 (176)
                      -.+-++...+++.+|++.|+.+ +.         .+.+.-.++-..+.++|...+++++|+.+|+.+....+    ..++
T Consensus       297 Drl~aL~~r~r~~~vi~~y~~l-~~---------~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~  366 (822)
T PRK14574        297 DRLGALLVRHQTADLIKEYEAM-EA---------EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDD  366 (822)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHh-hh---------cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcc
Confidence            3467788889999999999999 44         23333356777788999999999999999999876532    1234


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhcccCCC-----------Ccc--H-hHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNV-----------QRT--V-KSLNTLLNALLTCGKLDRMKELFISFNLKA  152 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----------~p~--~-~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~  152 (176)
                      ......|..+|...+++++|.++++.+.+..-           .||  - ..+..++..+...|++.+|+++++++....
T Consensus       367 ~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a  446 (822)
T PRK14574        367 LLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA  446 (822)
T ss_pred             hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            44457788999999999999999998875210           111  1 223445677888999999999999987766


Q ss_pred             ccccchHHHHHHHHHhhcccc
Q 036589          153 IAVLDGLCSNLKIIMNDSQVR  173 (176)
Q Consensus       153 ~~~p~~~t~~~li~~~~~~g~  173 (176)
                      +.  |......+-+.+...|+
T Consensus       447 P~--n~~l~~~~A~v~~~Rg~  465 (822)
T PRK14574        447 PA--NQNLRIALASIYLARDL  465 (822)
T ss_pred             CC--CHHHHHHHHHHHHhcCC
Confidence            65  77777777777666654

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.29  E-value=3.4e-05  Score=45.83  Aligned_cols=96  Identities=14%  Similarity=0.066  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHH
Q 036589           53 HYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL  132 (176)
Q Consensus        53 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~  132 (176)
                      .|..+...+...|++++|...+++..+..  ..+...+..+...+...|++++|.+.|+...+.. ..+..++..+...+
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~   78 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELD--PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAY   78 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHH
Confidence            35567778888999999999999998762  2234677788899999999999999999887654 33446788888999


Q ss_pred             HhcCcHHHHHHHHHHHHhc
Q 036589          133 LTCGKLDRMKELFISFNLK  151 (176)
Q Consensus       133 ~~~g~~~~a~~l~~~m~~~  151 (176)
                      ...|++++|...+....+.
T Consensus        79 ~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          79 YKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             HHHHhHHHHHHHHHHHHcc
Confidence            9999999999999887653

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=98.29  E-value=1.5e-05  Score=55.71  Aligned_cols=88  Identities=10%  Similarity=0.209  Sum_probs=74.4

Q ss_pred             CchHHHHHHHHHHHh-----ccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCc----------------HHHHHH
Q 036589           85 PEEIIFCNVISFYGR-----ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGK----------------LDRMKE  143 (176)
Q Consensus        85 ~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~----------------~~~a~~  143 (176)
                      .|..+|..+++.|.+     .|..+=....++.|.+.|+.-|..+|+.||+.+-+...                -+-|++
T Consensus        45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~  124 (228)
T PF06239_consen   45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID  124 (228)
T ss_pred             ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence            466677777777754     46788888889999999999999999999999987442                366889


Q ss_pred             HHHHHHhccccccchHHHHHHHHHhhcccc
Q 036589          144 LFISFNLKAIAVLDGLCSNLKIIMNDSQVR  173 (176)
Q Consensus       144 l~~~m~~~~~~~p~~~t~~~li~~~~~~g~  173 (176)
                      |++.|...|+. ||..|+..+++.+.+.+.
T Consensus       125 lL~qME~~gV~-Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  125 LLEQMENNGVM-PDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHHHcCCC-CcHHHHHHHHHHhccccH
Confidence            99999999999 999999999999987653

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.29  E-value=1.4e-05  Score=61.79  Aligned_cols=161  Identities=12%  Similarity=-0.044  Sum_probs=114.0

Q ss_pred             CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCC--------------------------------CCCCCCCcHH
Q 036589            5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAP--------------------------------PLKPFRYNLL   52 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------------------------------~~~~~~~~~~   52 (176)
                      ++.....+...|.+.|++++|.+++..+.+... ....                                .....+.++.
T Consensus       186 ~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~-~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~  264 (398)
T PRK10747        186 HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHV-GDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVA  264 (398)
T ss_pred             CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHH
Confidence            344667788999999999999988888833221 1000                                0012223555


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHH
Q 036589           53 HYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL  132 (176)
Q Consensus        53 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~  132 (176)
                      ....+...+...|+.++|.+++++..+. .  ++..  -.++.+....++.+++.+..+...+.. +-|...+..+-..+
T Consensus       265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~--~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~  338 (398)
T PRK10747        265 LQVAMAEHLIECDDHDTAQQIILDGLKR-Q--YDER--LVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLL  338 (398)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhc-C--CCHH--HHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence            6666777888889999999988888765 3  3331  113444445688899999888887543 34556677888999


Q ss_pred             HhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589          133 LTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       133 ~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      .+.+++++|.+.|+...+.  . |+..+|-.+...+.+.|+.+
T Consensus       339 ~~~~~~~~A~~~le~al~~--~-P~~~~~~~La~~~~~~g~~~  378 (398)
T PRK10747        339 MKHGEWQEASLAFRAALKQ--R-PDAYDYAWLADALDRLHKPE  378 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhc--C-CCHHHHHHHHHHHHHcCCHH
Confidence            9999999999999998764  3 88888889999998888754

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.26  E-value=9e-05  Score=46.82  Aligned_cols=103  Identities=11%  Similarity=-0.032  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCC--CCccHhHHHHH
Q 036589           52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRV-IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFN--VQRTVKSLNTL  128 (176)
Q Consensus        52 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~l  128 (176)
                      .++......+.+.|++++|...|+.+.+...- ......+..+..++.+.|++++|...|+.+....  .......+..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            45666788889999999999999999876211 1123456668999999999999999999988542  11224567888


Q ss_pred             HHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589          129 LNALLTCGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus       129 l~~~~~~g~~~~a~~l~~~m~~~~~~  154 (176)
                      ...+.+.|+.++|.+.+++..+..+.
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~~p~  108 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRYPG  108 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHCcC
Confidence            88999999999999999999887554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.26  E-value=0.00016  Score=51.72  Aligned_cols=148  Identities=14%  Similarity=0.096  Sum_probs=114.8

Q ss_pred             HHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHH
Q 036589           12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFC   91 (176)
Q Consensus        12 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~   91 (176)
                      +-..+.-.|+-+.+..+.... .          ...+-|.......+....+.|++..|...+++....  -.+|...|+
T Consensus        72 ~a~a~~~~G~a~~~l~~~~~~-~----------~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--~p~d~~~~~  138 (257)
T COG5010          72 LATALYLRGDADSSLAVLQKS-A----------IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--APTDWEAWN  138 (257)
T ss_pred             HHHHHHhcccccchHHHHhhh-h----------ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--CCCChhhhh
Confidence            344455556666666655554 1          223446667777888999999999999999999875  478999999


Q ss_pred             HHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhcc
Q 036589           92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQ  171 (176)
Q Consensus        92 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~  171 (176)
                      .+--+|-+.|++++|..-|.+..+.- .-+....|.|.-.|.-.|+.+.|..++......+..  |...-..+.-.-...
T Consensus       139 ~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a--d~~v~~NLAl~~~~~  215 (257)
T COG5010         139 LLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA--DSRVRQNLALVVGLQ  215 (257)
T ss_pred             HHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC--chHHHHHHHHHHhhc
Confidence            99999999999999999999887543 346677899999999999999999999998877664  666666666666666


Q ss_pred             ccCC
Q 036589          172 VRVT  175 (176)
Q Consensus       172 g~~~  175 (176)
                      |+++
T Consensus       216 g~~~  219 (257)
T COG5010         216 GDFR  219 (257)
T ss_pred             CChH
Confidence            6654

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.26  E-value=0.00011  Score=60.43  Aligned_cols=144  Identities=9%  Similarity=0.006  Sum_probs=113.8

Q ss_pred             CCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 036589            6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP   85 (176)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~   85 (176)
                      +..+..|.+...+.|.+++|..+++.. .+.          .+-+......+...+.+.+++++|....++....   .|
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~-~~~----------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p  151 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGI-HQR----------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GS  151 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHH-Hhh----------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CC
Confidence            445667788888999999999999998 332          1235667888999999999999999999999966   34


Q ss_pred             c-hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHH
Q 036589           86 E-EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLK  164 (176)
Q Consensus        86 ~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~l  164 (176)
                      + ....+.+-.++.+.|++++|+.+|++....+ .-+...+..+-..+-..|+.++|...|+...+.--  |...-|+.+
T Consensus       152 ~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~--~~~~~~~~~  228 (694)
T PRK15179        152 SSAREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIG--DGARKLTRR  228 (694)
T ss_pred             CCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC--cchHHHHHH
Confidence            4 4455778889999999999999999999732 33478889999999999999999999999876433  345565554


Q ss_pred             HH
Q 036589          165 II  166 (176)
Q Consensus       165 i~  166 (176)
                      +.
T Consensus       229 ~~  230 (694)
T PRK15179        229 LV  230 (694)
T ss_pred             HH
Confidence            43

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.25  E-value=4.3e-05  Score=56.31  Aligned_cols=155  Identities=14%  Similarity=0.129  Sum_probs=85.4

Q ss_pred             HHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHH
Q 036589           11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIF   90 (176)
Q Consensus        11 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~   90 (176)
                      .|=+.|.+.|..++|+++-.-+....       .-.+.......-.|..=|...|-++.|+.+|..+... + ..-....
T Consensus        74 tLGnLfRsRGEvDRAIRiHQ~L~~sp-------dlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de-~-efa~~Al  144 (389)
T COG2956          74 TLGNLFRSRGEVDRAIRIHQTLLESP-------DLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDE-G-EFAEGAL  144 (389)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCC-------CCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc-h-hhhHHHH
Confidence            44556666677777776665552221       0111122223334555566667777777777776654 1 1222334


Q ss_pred             HHHHHHHHhccCHHHHHHHHHhcccCCCC-------------------------------------ccHhHHHHHH-HHH
Q 036589           91 CNVISFYGRARLLEHALQVFDEMPSFNVQ-------------------------------------RTVKSLNTLL-NAL  132 (176)
Q Consensus        91 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~-------------------------------------p~~~~~~~ll-~~~  132 (176)
                      ..|+..|....+|++|+++-+++...+-.                                     |+.+--++++ +.+
T Consensus       145 qqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~  224 (389)
T COG2956         145 QQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVE  224 (389)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHH
Confidence            45666666666666666655554433322                                     2222223333 444


Q ss_pred             HhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589          133 LTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       133 ~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      ...|++.+|.+.++...+.+.. --..+-..|..+|...|+.+
T Consensus       225 ~~~g~y~~AV~~~e~v~eQn~~-yl~evl~~L~~~Y~~lg~~~  266 (389)
T COG2956         225 LAKGDYQKAVEALERVLEQNPE-YLSEVLEMLYECYAQLGKPA  266 (389)
T ss_pred             HhccchHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHhCCHH
Confidence            5566777777777777666655 55667777777777777653

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.23  E-value=0.00013  Score=52.40  Aligned_cols=130  Identities=18%  Similarity=0.153  Sum_probs=103.2

Q ss_pred             HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHH
Q 036589           13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCN   92 (176)
Q Consensus        13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~   92 (176)
                      ...|++.+++++|++..+.. .               +...+..=...+.+..+++-|++.+++|.+.    -+..|.+.
T Consensus       115 a~i~~~~~~~deAl~~~~~~-~---------------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i----ded~tLtQ  174 (299)
T KOG3081|consen  115 AIIYMHDGDFDEALKALHLG-E---------------NLEAAALNVQILLKMHRFDLAEKELKKMQQI----DEDATLTQ  174 (299)
T ss_pred             hHHhhcCCChHHHHHHHhcc-c---------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----chHHHHHH
Confidence            34678899999999998875 1               4555555567778899999999999999977    36777777


Q ss_pred             HHHHHHh----ccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589           93 VISFYGR----ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI  165 (176)
Q Consensus        93 li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li  165 (176)
                      |..+|.+    .+.+.+|.-+|++|-+ ...|+..+.|-...++...|++++|..++++...+...  +..|...+|
T Consensus       175 LA~awv~la~ggek~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~--dpetL~Nli  248 (299)
T KOG3081|consen  175 LAQAWVKLATGGEKIQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK--DPETLANLI  248 (299)
T ss_pred             HHHHHHHHhccchhhhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC--CHHHHHHHH
Confidence            7777765    4569999999999984 34699999999999999999999999999999877665  444444443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.22  E-value=2.2e-05  Score=52.07  Aligned_cols=103  Identities=6%  Similarity=-0.171  Sum_probs=84.6

Q ss_pred             HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchH
Q 036589            9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEI   88 (176)
Q Consensus         9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~   88 (176)
                      +..+-..+...|++++|...|+.. ..          --+.+...|..+..++.+.|++++|...|+...+.  -..+..
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~a-l~----------~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--~p~~~~   93 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWL-VM----------AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--DASHPE   93 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH-HH----------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcH
Confidence            555677888999999999999997 22          12447889999999999999999999999999976  245777


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHH
Q 036589           89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN  126 (176)
Q Consensus        89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  126 (176)
                      .+..+-.++.+.|++++|+..|+...+..  |+-.-+.
T Consensus        94 a~~~lg~~l~~~g~~~eAi~~~~~Al~~~--p~~~~~~  129 (144)
T PRK15359         94 PVYQTGVCLKMMGEPGLAREAFQTAIKMS--YADASWS  129 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHH
Confidence            88889999999999999999999988653  5544333

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.20  E-value=0.00018  Score=49.14  Aligned_cols=118  Identities=13%  Similarity=0.044  Sum_probs=87.8

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc--hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHH
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE--EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT  127 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  127 (176)
                      ....|..+...+...|++++|...|++..+. ...+.  ...+..+...+.+.|++++|+..+++..+.. +-+...+..
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~  111 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKL-EEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNN  111 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence            5567888888999999999999999999865 33222  4678889999999999999999999988643 224566677


Q ss_pred             HHHHHHhcCc--------------HHHHHHHHHHHHhccccccchHHHHHHHHHhhccccC
Q 036589          128 LLNALLTCGK--------------LDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       128 ll~~~~~~g~--------------~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~  174 (176)
                      +...+...|+              +++|.+++++....     +...|..++..+...|+.
T Consensus       112 lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~-----~p~~~~~~~~~~~~~~~~  167 (172)
T PRK02603        112 IAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL-----APNNYIEAQNWLKTTGRS  167 (172)
T ss_pred             HHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh-----CchhHHHHHHHHHhcCcc
Confidence            7777777766              45666666666553     333477777777776664

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.19  E-value=8.4e-05  Score=54.85  Aligned_cols=124  Identities=15%  Similarity=0.097  Sum_probs=99.0

Q ss_pred             ccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchH--HHHHHHHH
Q 036589           19 QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEI--IFCNVISF   96 (176)
Q Consensus        19 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~--~~~~li~~   96 (176)
                      +.++++|.++|-+|....           +.+..+.-+|.+-|-..|..+.|.++++.+.++.+...+..  ....|-+-
T Consensus        48 s~Q~dKAvdlF~e~l~~d-----------~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D  116 (389)
T COG2956          48 SNQPDKAVDLFLEMLQED-----------PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD  116 (389)
T ss_pred             hcCcchHHHHHHHHHhcC-----------chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence            678999999999993331           22555666788999999999999999999998854444443  33457788


Q ss_pred             HHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589           97 YGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus        97 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~  154 (176)
                      |-.+|-++.|+.+|..+.+.+ ..-....--|+..|-...+|++|+++-+++.+.+-.
T Consensus       117 ym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q  173 (389)
T COG2956         117 YMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ  173 (389)
T ss_pred             HHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc
Confidence            899999999999999999755 234556778999999999999999999999886554

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.18  E-value=1.2e-05  Score=48.08  Aligned_cols=82  Identities=13%  Similarity=0.176  Sum_probs=61.3

Q ss_pred             cCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHH
Q 036589           64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKE  143 (176)
Q Consensus        64 ~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~  143 (176)
                      .|+++.|..+++++.+.....++...+-.+..+|.+.|++++|+.+++. .+.+. .+....-.+..+|.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence            5789999999999998832223555566689999999999999999998 32221 233444455788999999999999


Q ss_pred             HHHH
Q 036589          144 LFIS  147 (176)
Q Consensus       144 l~~~  147 (176)
                      +|++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            9875

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.17  E-value=5.8e-05  Score=58.42  Aligned_cols=128  Identities=10%  Similarity=0.027  Sum_probs=102.7

Q ss_pred             CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589            5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI   84 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~   84 (176)
                      ++.....+...+.+.|+.++|.+++++..+.            .|+....  ++.+....++.+++.+..+...+.  .+
T Consensus       262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~------------~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P  325 (398)
T PRK10747        262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR------------QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HG  325 (398)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------------CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CC
Confidence            3445567788999999999999999887222            3344322  344445669999999999998876  33


Q ss_pred             CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589           85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL  150 (176)
Q Consensus        85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~  150 (176)
                      -|...+..+-..+.+.+++++|.+.|+...+.  .|+...+-.+...+.+.|+.++|.+++++-..
T Consensus       326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            45556788999999999999999999999865  49999999999999999999999999998654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.17  E-value=7.2e-05  Score=57.49  Aligned_cols=117  Identities=15%  Similarity=0.049  Sum_probs=95.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHH
Q 036589           51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLN  130 (176)
Q Consensus        51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~  130 (176)
                      -+.-..++..+...++++.|..+++++.+. .  |+..  ..+++.+...++-.+|++++++..... +-+......-..
T Consensus       169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~-~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~  242 (395)
T PF09295_consen  169 NYLVDTLLKYLSLTQRYDEAIELLEKLRER-D--PEVA--VLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAE  242 (395)
T ss_pred             hHHHHHHHHHHhhcccHHHHHHHHHHHHhc-C--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            344556677777789999999999999988 3  5543  447888888899999999999888432 336666666778


Q ss_pred             HHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589          131 ALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       131 ~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      .|.+.++++.|+++.+++.+..+.  +..+|..|..+|...|+++
T Consensus       243 fLl~k~~~~lAL~iAk~av~lsP~--~f~~W~~La~~Yi~~~d~e  285 (395)
T PF09295_consen  243 FLLSKKKYELALEIAKKAVELSPS--EFETWYQLAECYIQLGDFE  285 (395)
T ss_pred             HHHhcCCHHHHHHHHHHHHHhCch--hHHHHHHHHHHHHhcCCHH
Confidence            889999999999999999987665  7789999999999999976

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.16  E-value=6.8e-05  Score=55.30  Aligned_cols=132  Identities=11%  Similarity=0.107  Sum_probs=103.3

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~   86 (176)
                      ++|-.+|+...|.+..+.|.++|++. ...        ......++...++|..+ ..++.+.|.++|+...+.  +..+
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a-~~~--------~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~--f~~~   69 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRA-RKD--------KRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK--FPSD   69 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-HCC--------CCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH--HTT-
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHH-HcC--------CCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH--CCCC
Confidence            35888999999999999999999999 443        34556676666666533 346678899999999987  5667


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCcc---HhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRT---VKSLNTLLNALLTCGKLDRMKELFISFNLK  151 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~  151 (176)
                      ...|..-++.+.+.++.+.|..+|+..... +.++   ...|...+..=.+.|+++.+.++.+++.+.
T Consensus        70 ~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   70 PDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            778888899999999999999999998854 2332   358999999999999999999999998874

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=0.00015  Score=55.84  Aligned_cols=134  Identities=8%  Similarity=0.013  Sum_probs=114.1

Q ss_pred             CCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 036589            3 KAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR   82 (176)
Q Consensus         3 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g   82 (176)
                      +.....|+.+=+-|....+-+.|++-++... +          -.+.|-..|--+.++|.-.+...=|.-.|++..+-  
T Consensus       361 p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv-d----------i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--  427 (559)
T KOG1155|consen  361 PKYLSAWTLMGHEYVEMKNTHAAIESYRRAV-D----------INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--  427 (559)
T ss_pred             cchhHHHHHhhHHHHHhcccHHHHHHHHHHH-h----------cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--
Confidence            3344578888889999999999999999972 2          33558889999999999999999999999998865  


Q ss_pred             CCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589           83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL  150 (176)
Q Consensus        83 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~  150 (176)
                      -+-|...|.+|-++|.+.+++++|+..|......| ..+...+..|.+.|-+.++..+|...|..-++
T Consensus       428 kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  428 KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            23477899999999999999999999999988665 44678899999999999999999999988765

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.16  E-value=1.9e-05  Score=58.38  Aligned_cols=134  Identities=11%  Similarity=0.037  Sum_probs=101.7

Q ss_pred             CCCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036589            2 NKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT   81 (176)
Q Consensus         2 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~   81 (176)
                      ..|-+.||-.|-+.|-+..++..|+.+|.+- .          +.++-++....-+.+.+-..++.++|.++|+...+. 
T Consensus       252 q~~~~dTfllLskvY~ridQP~~AL~~~~~g-l----------d~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~-  319 (478)
T KOG1129|consen  252 QFPHPDTFLLLSKVYQRIDQPERALLVIGEG-L----------DSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL-  319 (478)
T ss_pred             cCCchhHHHHHHHHHHHhccHHHHHHHHhhh-h----------hcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc-
Confidence            3577889999999999999999999999987 2          344556665566667777888999999999988876 


Q ss_pred             CCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 036589           82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN  149 (176)
Q Consensus        82 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~  149 (176)
                       ..-++....++...|.=.++++-|+..|+.+.+.|+. +...|+.+--+|...+.+|-++.-|.+..
T Consensus       320 -~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAl  385 (478)
T KOG1129|consen  320 -HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRAL  385 (478)
T ss_pred             -CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence             3445556666667777778888888888888888854 66677777777777777777776666654

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=98.15  E-value=6.8e-05  Score=48.48  Aligned_cols=97  Identities=9%  Similarity=0.033  Sum_probs=78.4

Q ss_pred             CCCHHHHHHHHHhccChhHHHHhhcCC---CCCCCCCC--CCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036589            6 PTSPFRLASLLHLQKHPKLALQLFKNP---NPNANDTE--APPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD   80 (176)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~   80 (176)
                      ..++..+|.++++.|+++....+++..   ........  .++..+..|+.....+++.+|+..|++..|+++.+...+.
T Consensus         2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~   81 (126)
T PF12921_consen    2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK   81 (126)
T ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            456789999999999999998888764   11111111  2456677899999999999999999999999999999999


Q ss_pred             CCCCCchHHHHHHHHHHHhccC
Q 036589           81 TRVIPEEIIFCNVISFYGRARL  102 (176)
Q Consensus        81 ~g~~~~~~~~~~li~~~~~~g~  102 (176)
                      ++++.+..+|..|++-.....+
T Consensus        82 Y~I~i~~~~W~~Ll~W~~v~s~  103 (126)
T PF12921_consen   82 YPIPIPKEFWRRLLEWAYVLSS  103 (126)
T ss_pred             cCCCCCHHHHHHHHHHHHHhcC
Confidence            9999999999999988766554

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.15  E-value=3.3e-05  Score=50.27  Aligned_cols=105  Identities=15%  Similarity=-0.002  Sum_probs=83.2

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      ....+...+...|++++|.+.|+.. ...          .+.+...|..+..++.+.|++++|...++...+. . ..+.
T Consensus        19 ~~~~~a~~~~~~~~~~~A~~~~~~~-~~~----------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~-p~~~   85 (135)
T TIGR02552        19 QIYALAYNLYQQGRYDEALKLFQLL-AAY----------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL-D-PDDP   85 (135)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHH-HHh----------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-CCCh
Confidence            3455667888899999999999997 221          2347788899999999999999999999998876 2 4456


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHH
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT  127 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  127 (176)
                      ..+..+-..|...|++++|+..|+...+..  |+...+..
T Consensus        86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~  123 (135)
T TIGR02552        86 RPYFHAAECLLALGEPESALKALDLAIEIC--GENPEYSE  123 (135)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--cccchHHH
Confidence            677778889999999999999999888653  55544443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR00540 hemY_coli hemY protein

Probab=98.14  E-value=6.8e-05  Score=58.26  Aligned_cols=133  Identities=9%  Similarity=-0.020  Sum_probs=88.4

Q ss_pred             CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHH---HHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036589            5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLH---YDLIITKLGRAKMFDEMQQILHQLKHDT   81 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~---y~~li~~~~~~g~~~~a~~~~~~m~~~~   81 (176)
                      ++..+..+...+...|++++|.+++++..+..            |+...   ...........++.+.+.+.++...+..
T Consensus       262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~------------pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~  329 (409)
T TIGR00540       262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL------------GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV  329 (409)
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC------------CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence            45566677788888888888888888873321            12211   1111122233567777777777766653


Q ss_pred             CCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 036589           82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN  149 (176)
Q Consensus        82 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~  149 (176)
                      .-.|+.....++-..+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-.
T Consensus       330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            33333245567788888888888888888853333335888888888888888888888888888753

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.14  E-value=0.00013  Score=54.95  Aligned_cols=165  Identities=7%  Similarity=-0.077  Sum_probs=104.6

Q ss_pred             CCCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036589            2 NKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT   81 (176)
Q Consensus         2 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~   81 (176)
                      ..-++...+...++|.+.|++.....++..+.+.+.-+...   -..-...+|..+++-....+..+.-...|++..+. 
T Consensus       183 ~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e---~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-  258 (400)
T COG3071         183 TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEE---AARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-  258 (400)
T ss_pred             CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHH---HHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-
Confidence            34455567778999999999999999999994443110000   00011224555665555555555555566655554 


Q ss_pred             CCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCC------------------------------ccHhHHHHHHHH
Q 036589           82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQ------------------------------RTVKSLNTLLNA  131 (176)
Q Consensus        82 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~------------------------------p~~~~~~~ll~~  131 (176)
                       .+-+...-.+++.-+.++|+.++|.++.++-.+.+..                              -++..+.+|-..
T Consensus       259 -lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L  337 (400)
T COG3071         259 -LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRL  337 (400)
T ss_pred             -hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence             3334444455566666666666666655544432211                              233567778888


Q ss_pred             HHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccC
Q 036589          132 LLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       132 ~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~  174 (176)
                      |.+++.+.+|.+.|+...  ... |+..+|+.+-++|.+.|+.
T Consensus       338 ~~k~~~w~kA~~~leaAl--~~~-~s~~~~~~la~~~~~~g~~  377 (400)
T COG3071         338 ALKNKLWGKASEALEAAL--KLR-PSASDYAELADALDQLGEP  377 (400)
T ss_pred             HHHhhHHHHHHHHHHHHH--hcC-CChhhHHHHHHHHHHcCCh
Confidence            889999999999998544  345 8899999999999888864

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.12  E-value=0.00024  Score=54.96  Aligned_cols=146  Identities=11%  Similarity=0.113  Sum_probs=113.5

Q ss_pred             HHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHH
Q 036589           11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIF   90 (176)
Q Consensus        11 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~   90 (176)
                      .+...|-...++..|++++-+. ..          -++-|+...+.|...|-+.|+-.+|.+.+-+--+.  +.-+..+.
T Consensus       563 qianiye~led~aqaie~~~q~-~s----------lip~dp~ilskl~dlydqegdksqafq~~ydsyry--fp~nie~i  629 (840)
T KOG2003|consen  563 QIANIYELLEDPAQAIELLMQA-NS----------LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY--FPCNIETI  629 (840)
T ss_pred             HHHHHHHHhhCHHHHHHHHHHh-cc----------cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc--cCcchHHH
Confidence            3455666677888888888776 22          34558889999999999999999998887665544  56677788


Q ss_pred             HHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHH-HhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhh
Q 036589           91 CNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL-LTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMND  169 (176)
Q Consensus        91 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~-~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~  169 (176)
                      ..|...|....=++++++.|+...  -++|+..-|-.||.+| .+.|++.+|.+++++.-.. ++ -|..+...|+..+.
T Consensus       630 ewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fp-edldclkflvri~~  705 (840)
T KOG2003|consen  630 EWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FP-EDLDCLKFLVRIAG  705 (840)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-Cc-cchHHHHHHHHHhc
Confidence            878888888888999999999754  2369999999999665 5589999999999996543 44 58888888888777


Q ss_pred             cccc
Q 036589          170 SQVR  173 (176)
Q Consensus       170 ~~g~  173 (176)
                      ..|-
T Consensus       706 dlgl  709 (840)
T KOG2003|consen  706 DLGL  709 (840)
T ss_pred             cccc
Confidence            6653

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=98.12  E-value=1.9e-06  Score=70.40  Aligned_cols=83  Identities=16%  Similarity=0.145  Sum_probs=56.6

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhH
Q 036589           45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS  124 (176)
Q Consensus        45 ~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~  124 (176)
                      .|+.|+.++|..+|.-||..|+++.|- +|.-|+-. ....+...|+.++.+-..+++.+.+.           .|...+
T Consensus        19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~k-sLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt   85 (1088)
T KOG4318|consen   19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIK-SLPVREGVFRGLVASHKEANDAENPK-----------EPLADT   85 (1088)
T ss_pred             hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcc-cccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence            456667777777777777777777776 66666666 66666777777777666666665554           466777


Q ss_pred             HHHHHHHHHhcCcHHH
Q 036589          125 LNTLLNALLTCGKLDR  140 (176)
Q Consensus       125 ~~~ll~~~~~~g~~~~  140 (176)
                      |+.|+.+|..+||+.-
T Consensus        86 yt~Ll~ayr~hGDli~  101 (1088)
T KOG4318|consen   86 YTNLLKAYRIHGDLIL  101 (1088)
T ss_pred             HHHHHHHHHhccchHH
Confidence            7777777777777544

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.08  E-value=8.6e-05  Score=46.93  Aligned_cols=102  Identities=8%  Similarity=-0.100  Sum_probs=79.3

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC-CCCc
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR-VIPE   86 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g-~~~~   86 (176)
                      ++..+...+.+.|++++|.+.|+.+....        ++.......+..+..++.+.|+++.|...|+.+..... ....
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~   75 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKY--------PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKA   75 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--------CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcc
Confidence            46677888899999999999999983221        22222355677799999999999999999999987522 1223


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhcccCC
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPSFN  117 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  117 (176)
                      ...+..+..++.+.|++++|...++++.+..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        76 PDALLKLGMSLQELGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             cHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence            4567778889999999999999999998654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.08  E-value=6.7e-05  Score=59.30  Aligned_cols=164  Identities=10%  Similarity=-0.019  Sum_probs=114.1

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCC-CCCcHHH-HHHHHHHHHhcCChHHHHHHHHHHhhc----C
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKP-FRYNLLH-YDLIITKLGRAKMFDEMQQILHQLKHD----T   81 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-y~~li~~~~~~g~~~~a~~~~~~m~~~----~   81 (176)
                      +...+...|...|+++.|.+++++....-     ++..| ..|.+.+ .+.+...|...+++++|..+|+++...    .
T Consensus       201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l-----~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~  275 (508)
T KOG1840|consen  201 TLRNLAEMYAVQGRLEKAEPLCKQALRIL-----EKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF  275 (508)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHH-----HHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence            55668899999999999999998862110     00012 1334443 333667788899999999999988754    1


Q ss_pred             C--CCCchHHHHHHHHHHHhccCHHHHHHHHHhccc-----CCC-Cc-cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc-
Q 036589           82 R--VIPEEIIFCNVISFYGRARLLEHALQVFDEMPS-----FNV-QR-TVKSLNTLLNALLTCGKLDRMKELFISFNLK-  151 (176)
Q Consensus        82 g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~-  151 (176)
                      |  ...-..+++.|-.+|.+.|++++|..+++...+     .|. .| -...++.+...++..+++++|..++....+. 
T Consensus       276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~  355 (508)
T KOG1840|consen  276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY  355 (508)
T ss_pred             CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            2  333457788899999999999888877765432     111 12 2344777788889999999999999876431 


Q ss_pred             ----cccc-cchHHHHHHHHHhhccccCCC
Q 036589          152 ----AIAV-LDGLCSNLKIIMNDSQVRVTG  176 (176)
Q Consensus       152 ----~~~~-p~~~t~~~li~~~~~~g~~~~  176 (176)
                          |..+ --..+++.|-..|-..|++++
T Consensus       356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~e  385 (508)
T KOG1840|consen  356 LDAPGEDNVNLAKIYANLAELYLKMGKYKE  385 (508)
T ss_pred             HhhccccchHHHHHHHHHHHHHHHhcchhH
Confidence                2221 135789999999999998864

>TIGR00540 hemY_coli hemY protein

Probab=98.06  E-value=0.0003  Score=54.69  Aligned_cols=122  Identities=10%  Similarity=0.005  Sum_probs=94.7

Q ss_pred             ccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcH-HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHH
Q 036589           19 QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNL-LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFY   97 (176)
Q Consensus        19 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~   97 (176)
                      .|+++.|.+.+... .+           ..|+. ..|-....+....|+.+.|.+.+++..+. ...+.....-.....+
T Consensus        97 ~g~~~~A~~~l~~~-~~-----------~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~-~p~~~l~~~~~~a~l~  163 (409)
T TIGR00540        97 EGDYAKAEKLIAKN-AD-----------HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL-AGNDNILVEIARTRIL  163 (409)
T ss_pred             CCCHHHHHHHHHHH-hh-----------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCcCchHHHHHHHHHH
Confidence            79999999999877 22           23443 33344457777889999999999998866 2222222334457788


Q ss_pred             HhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589           98 GRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus        98 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~  154 (176)
                      ...|++++|.+.++.+.+.. +-+......+...+...|++++|.+++..+.+.+..
T Consensus       164 l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~  219 (409)
T TIGR00540       164 LAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF  219 (409)
T ss_pred             HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            88999999999999999765 336678889999999999999999999999988765

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.05  E-value=6.9e-05  Score=44.44  Aligned_cols=95  Identities=13%  Similarity=0.054  Sum_probs=76.3

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      .+..+...+...|++++|...|++....           .+.+...+..+..++...+++++|.+.++..... . ..+.
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~   68 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALEL-----------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL-D-PDNA   68 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhc-----------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C-Ccch
Confidence            3566778888999999999999987222           1224477888899999999999999999998876 2 2344


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhccc
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPS  115 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~  115 (176)
                      .++..+...+...|++++|...+....+
T Consensus        69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~   96 (100)
T cd00189          69 KAYYNLGLAYYKLGKYEEALEAYEKALE   96 (100)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence            6788888999999999999999988764

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.05  E-value=0.00027  Score=50.55  Aligned_cols=136  Identities=14%  Similarity=-0.009  Sum_probs=96.5

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhc--------CChHHHHHHHHHHhh
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRA--------KMFDEMQQILHQLKH   79 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~--------g~~~~a~~~~~~m~~   79 (176)
                      .+..+...+.+.|++++|...|+.+....        ++...-...+..+..++.+.        |++++|.+.|+.+..
T Consensus        72 a~~~la~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  143 (235)
T TIGR03302        72 AQLDLAYAYYKSGDYAEAIAAADRFIRLH--------PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR  143 (235)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--------cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence            45677889999999999999999983221        22111223455555556554        788999999999987


Q ss_pred             cCCCCCch-HHH--------------HHHHHHHHhccCHHHHHHHHHhcccCC--CCccHhHHHHHHHHHHhcCcHHHHH
Q 036589           80 DTRVIPEE-IIF--------------CNVISFYGRARLLEHALQVFDEMPSFN--VQRTVKSLNTLLNALLTCGKLDRMK  142 (176)
Q Consensus        80 ~~g~~~~~-~~~--------------~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~  142 (176)
                      ...-.+.. ..+              ..+...|.+.|++++|+..|++..+..  .+.....+..+..++.+.|++++|.
T Consensus       144 ~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~  223 (235)
T TIGR03302       144 RYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQ  223 (235)
T ss_pred             HCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence            62111111 011              134567888999999999999987542  1234578899999999999999999


Q ss_pred             HHHHHHHhc
Q 036589          143 ELFISFNLK  151 (176)
Q Consensus       143 ~l~~~m~~~  151 (176)
                      .+++.+...
T Consensus       224 ~~~~~l~~~  232 (235)
T TIGR03302       224 DAAAVLGAN  232 (235)
T ss_pred             HHHHHHHhh
Confidence            999988764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.02  E-value=0.0005  Score=46.67  Aligned_cols=122  Identities=15%  Similarity=-0.021  Sum_probs=83.5

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC--chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHH
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP--EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT  127 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  127 (176)
                      ....|..+...+...|++++|...|+..... ...+  ...++..+-..|...|++++|+..+++..+.. +....+++.
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l-~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~  111 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRL-EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNN  111 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence            4667788888888999999999999999865 2222  23578889999999999999999999987542 234455666


Q ss_pred             HHHHHH-------hcCcHHHHHHHHHHHHh---ccccccchHHHHHHHHHhhccccC
Q 036589          128 LLNALL-------TCGKLDRMKELFISFNL---KAIAVLDGLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       128 ll~~~~-------~~g~~~~a~~l~~~m~~---~~~~~p~~~t~~~li~~~~~~g~~  174 (176)
                      +...+.       ..|++++|...+++-..   .... .+...+......+...|++
T Consensus       112 la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~-~~p~~~~~~~~~~~~~~~~  167 (168)
T CHL00033        112 MAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIA-LAPGNYIEAQNWLKITGRF  167 (168)
T ss_pred             HHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHH-hCcccHHHHHHHHHHhcCC
Confidence            666666       78888766655554321   1111 3333444444445555554

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.01  E-value=0.00058  Score=50.79  Aligned_cols=101  Identities=10%  Similarity=-0.037  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHH
Q 036589           51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLN  130 (176)
Q Consensus        51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~  130 (176)
                      ...|......+...|+.++|...|++..+. . ..+...|+.+-..|...|++++|.+.|+...+.. +-+...|..+..
T Consensus        64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l-~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~  140 (296)
T PRK11189         64 AQLHYERGVLYDSLGLRALARNDFSQALAL-R-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGI  140 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            456778888899999999999999999876 2 2356888999999999999999999999998653 224677888888


Q ss_pred             HHHhcCcHHHHHHHHHHHHhcccc
Q 036589          131 ALLTCGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus       131 ~~~~~g~~~~a~~l~~~m~~~~~~  154 (176)
                      .+...|++++|.+.|+...+....
T Consensus       141 ~l~~~g~~~eA~~~~~~al~~~P~  164 (296)
T PRK11189        141 ALYYGGRYELAQDDLLAFYQDDPN  164 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCC
Confidence            899999999999999998876554

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.01  E-value=0.00097  Score=44.55  Aligned_cols=100  Identities=8%  Similarity=0.002  Sum_probs=81.6

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL  129 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  129 (176)
                      +......+-.-+...|++++|.++|+-+..- .+ -+..-|-.|--++...|++++|+..|....... +-|...+-.+-
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~-Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag  110 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY-DA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAA  110 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-Cc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHH
Confidence            4555556677778999999999999999976 22 233444568888999999999999999988766 45888889999


Q ss_pred             HHHHhcCcHHHHHHHHHHHHhcc
Q 036589          130 NALLTCGKLDRMKELFISFNLKA  152 (176)
Q Consensus       130 ~~~~~~g~~~~a~~l~~~m~~~~  152 (176)
                      .++...|+.+.|.+-|+......
T Consensus       111 ~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        111 ECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHh
Confidence            99999999999999999876543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.00  E-value=0.00012  Score=54.07  Aligned_cols=119  Identities=10%  Similarity=0.126  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHH
Q 036589           52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA  131 (176)
Q Consensus        52 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~  131 (176)
                      .+|-.+++..-+.+..+.|..+|++.++...+..++....+++..+ ..++.+.|..+|+...+. +..+...|...++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            5788999999999999999999999997644555555555555543 346677799999988743 45678889999999


Q ss_pred             HHhcCcHHHHHHHHHHHHhccccccc---hHHHHHHHHHhhccccC
Q 036589          132 LLTCGKLDRMKELFISFNLKAIAVLD---GLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       132 ~~~~g~~~~a~~l~~~m~~~~~~~p~---~~t~~~li~~~~~~g~~  174 (176)
                      +.+.|+.+.|..+|++.... ++ ++   ...|...++.=.+.|++
T Consensus        80 l~~~~d~~~aR~lfer~i~~-l~-~~~~~~~iw~~~i~fE~~~Gdl  123 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS-LP-KEKQSKKIWKKFIEFESKYGDL  123 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT-SS-CHHHCHHHHHHHHHHHHHHS-H
T ss_pred             HHHhCcHHHHHHHHHHHHHh-cC-chhHHHHHHHHHHHHHHHcCCH
Confidence            99999999999999998876 32 22   35888888877777654

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.97  E-value=0.00042  Score=57.16  Aligned_cols=123  Identities=11%  Similarity=-0.016  Sum_probs=98.8

Q ss_pred             CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc-hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHH
Q 036589           47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE-EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL  125 (176)
Q Consensus        47 ~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  125 (176)
                      +..++..+-.|.......|++++|+.+++...+.   .|+ ......+...+.+.+++++|...+++..+.. +-+....
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~---~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~  157 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR---FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREI  157 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHH
Confidence            3456888888999999999999999999999965   454 4556778999999999999999999998664 2345556


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589          126 NTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       126 ~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      +.+-.++.+.|++++|.++|++....+..  +..++..+-.++-+.|+.+
T Consensus       158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~--~~~~~~~~a~~l~~~G~~~  205 (694)
T PRK15179        158 LLEAKSWDEIGQSEQADACFERLSRQHPE--FENGYVGWAQSLTRRGALW  205 (694)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHcCCHH
Confidence            67778889999999999999999984433  4677777777777777654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.97  E-value=0.00067  Score=52.59  Aligned_cols=107  Identities=14%  Similarity=0.028  Sum_probs=66.7

Q ss_pred             HhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCcc-HhHHHHHHHHHHhcCcHHH
Q 036589           62 GRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRT-VKSLNTLLNALLTCGKLDR  140 (176)
Q Consensus        62 ~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~  140 (176)
                      -..|.+++|+..++.+.+.  .+-|...+....+.+.+.++..+|.+.++.+...  .|+ ....-.+-.+|.+.|+..+
T Consensus       317 ~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e  392 (484)
T COG4783         317 YLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE  392 (484)
T ss_pred             HHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence            3456677777777776654  2233333344556667777777777777776644  244 4444455567777777777


Q ss_pred             HHHHHHHHHhccccccchHHHHHHHHHhhccccC
Q 036589          141 MKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       141 a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~  174 (176)
                      |+.++++.......  |...|..|-.+|...|+.
T Consensus       393 ai~~L~~~~~~~p~--dp~~w~~LAqay~~~g~~  424 (484)
T COG4783         393 AIRILNRYLFNDPE--DPNGWDLLAQAYAELGNR  424 (484)
T ss_pred             HHHHHHHHhhcCCC--CchHHHHHHHHHHHhCch
Confidence            77777776655554  666777777777766654

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.96  E-value=0.00013  Score=62.73  Aligned_cols=137  Identities=10%  Similarity=0.093  Sum_probs=105.8

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      .|..|...|.+..+.++|.++|+.|.           +.+.....+|...+..+.+..+-+.|..++++..+...-+-..
T Consensus      1532 V~~~L~~iy~k~ek~~~A~ell~~m~-----------KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLML-----------KKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHH-----------HHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence            46778888888888888988888883           2344577888888888888888888888888887662222233


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccc
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLD  157 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~  157 (176)
                      ....-.++.-.+.|+.+.+..+|+.....- +--...|+.+|+.=.++|+.+.+.++|++....++. |-
T Consensus      1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~-~k 1668 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS-IK 1668 (1710)
T ss_pred             HHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-hh
Confidence            444555666678899999999999887543 224678999999999999999999999999988887 54

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.96  E-value=0.00015  Score=50.72  Aligned_cols=109  Identities=12%  Similarity=0.022  Sum_probs=85.4

Q ss_pred             CCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHH-HhcCC--hHHHHHHHHHHhh
Q 036589            3 KAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKL-GRAKM--FDEMQQILHQLKH   79 (176)
Q Consensus         3 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~-~~~g~--~~~a~~~~~~m~~   79 (176)
                      ..+...|..+-..|...|++++|...|++. ...          .+-+...+..+..++ ...|+  .++|.+++++..+
T Consensus        70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~A-l~l----------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~  138 (198)
T PRK10370         70 PQNSEQWALLGEYYLWRNDYDNALLAYRQA-LQL----------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALA  138 (198)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHh----------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            455667889999999999999999999998 231          123777888888764 66677  5999999999998


Q ss_pred             cCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHH
Q 036589           80 DTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL  125 (176)
Q Consensus        80 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  125 (176)
                      . . .-+...+..+...+.+.|++++|+..|+++.+.. .|+..-+
T Consensus       139 ~-d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~  181 (198)
T PRK10370        139 L-D-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRT  181 (198)
T ss_pred             h-C-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHH
Confidence            7 2 2356777888899999999999999999998654 4444433

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.93  E-value=0.00026  Score=56.55  Aligned_cols=131  Identities=15%  Similarity=-0.040  Sum_probs=100.3

Q ss_pred             HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchH
Q 036589            9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEI   88 (176)
Q Consensus         9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~   88 (176)
                      |.-|--.|.+.++++.|.-.|+... +          -.+.+.+....+...+-+.|+.++|.+++++...- ..+-...
T Consensus       492 wYGlG~vy~Kqek~e~Ae~~fqkA~-~----------INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l-d~kn~l~  559 (638)
T KOG1126|consen  492 WYGLGTVYLKQEKLEFAEFHFQKAV-E----------INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL-DPKNPLC  559 (638)
T ss_pred             HHhhhhheeccchhhHHHHHHHhhh-c----------CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc-CCCCchh
Confidence            4445667889999999999999882 2          22446777777888888999999999999999876 3322223


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHhcccCCCCc-cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589           89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQR-TVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus        89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~  154 (176)
                      -|. -...+...+++++|+..++++++.  .| +...|-.+-..|.+.|+.+.|+.-|--+.+...+
T Consensus       560 ~~~-~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk  623 (638)
T KOG1126|consen  560 KYH-RASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK  623 (638)
T ss_pred             HHH-HHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence            333 556667789999999999999864  35 4556667779999999999999999888776555

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.93  E-value=0.00026  Score=53.66  Aligned_cols=98  Identities=7%  Similarity=0.029  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCC-CccH--hHHHHH
Q 036589           52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNV-QRTV--KSLNTL  128 (176)
Q Consensus        52 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~--~~~~~l  128 (176)
                      .....+...+...|++++|.+.+++..+. . +.+...+..+...|...|++++|+..+++.....- .|+.  ..|..+
T Consensus       115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~-~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~l  192 (355)
T cd05804         115 YLLGMLAFGLEEAGQYDRAEEAARRALEL-N-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHL  192 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHH
Confidence            34445556667788888888888888765 2 23345566777778888888888888887664321 1222  345567


Q ss_pred             HHHHHhcCcHHHHHHHHHHHHhc
Q 036589          129 LNALLTCGKLDRMKELFISFNLK  151 (176)
Q Consensus       129 l~~~~~~g~~~~a~~l~~~m~~~  151 (176)
                      ...+...|++++|.++|++....
T Consensus       193 a~~~~~~G~~~~A~~~~~~~~~~  215 (355)
T cd05804         193 ALFYLERGDYEAALAIYDTHIAP  215 (355)
T ss_pred             HHHHHHCCCHHHHHHHHHHHhcc
Confidence            77788888888888888887543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.90  E-value=0.0024  Score=48.41  Aligned_cols=146  Identities=12%  Similarity=0.001  Sum_probs=84.6

Q ss_pred             HHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHH----hcCChHHHHHHHHHHhhcCCCCCc-hH
Q 036589           14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG----RAKMFDEMQQILHQLKHDTRVIPE-EI   88 (176)
Q Consensus        14 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~----~~g~~~~a~~~~~~m~~~~g~~~~-~~   88 (176)
                      ..+...|++++|.+++++. .+.          .+.+...+.. ...+.    ..+..+.+.+.+..  .. ...|+ ..
T Consensus        51 ~~~~~~g~~~~A~~~~~~~-l~~----------~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~-~~~~~~~~  115 (355)
T cd05804          51 LSAWIAGDLPKALALLEQL-LDD----------YPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WA-PENPDYWY  115 (355)
T ss_pred             HHHHHcCCHHHHHHHHHHH-HHH----------CCCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cC-cCCCCcHH
Confidence            3455677888888887776 221          1223444442 22222    23444555555544  11 22333 33


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccc--hHHHHHHHH
Q 036589           89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLD--GLCSNLKII  166 (176)
Q Consensus        89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~--~~t~~~li~  166 (176)
                      ....+...+...|++++|++.+++..+.. +.+...+..+-..+...|++++|.+++++........|+  ...|-.+..
T Consensus       116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~  194 (355)
T cd05804         116 LLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL  194 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence            44455667777888888888888777544 334556677777778888888888888776654321023  234556666


Q ss_pred             HhhccccCC
Q 036589          167 MNDSQVRVT  175 (176)
Q Consensus       167 ~~~~~g~~~  175 (176)
                      .+...|+++
T Consensus       195 ~~~~~G~~~  203 (355)
T cd05804         195 FYLERGDYE  203 (355)
T ss_pred             HHHHCCCHH
Confidence            777777654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.88  E-value=0.00063  Score=51.95  Aligned_cols=94  Identities=7%  Similarity=-0.083  Sum_probs=78.6

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCc
Q 036589           58 ITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGK  137 (176)
Q Consensus        58 i~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~  137 (176)
                      ...+...|++++|.+.|++..+. . .-+...|..+..+|.+.|++++|+..++...+.. +.+...|..+-.+|...|+
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~-~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDL-D-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence            45566789999999999999976 2 2356677888999999999999999999998654 3367788888899999999


Q ss_pred             HHHHHHHHHHHHhcccc
Q 036589          138 LDRMKELFISFNLKAIA  154 (176)
Q Consensus       138 ~~~a~~l~~~m~~~~~~  154 (176)
                      +++|++.|++..+....
T Consensus        86 ~~eA~~~~~~al~l~P~  102 (356)
T PLN03088         86 YQTAKAALEKGASLAPG  102 (356)
T ss_pred             HHHHHHHHHHHHHhCCC
Confidence            99999999999876554

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.87  E-value=7e-05  Score=62.09  Aligned_cols=133  Identities=23%  Similarity=0.242  Sum_probs=105.8

Q ss_pred             cChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHh
Q 036589           20 KHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR   99 (176)
Q Consensus        20 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~   99 (176)
                      +..++|+++|.....           ..+-+.+.=|-+.-.++..|+++.|..||.++++. . .-+.-+|-.+..+|..
T Consensus       626 k~~~KAlq~y~kvL~-----------~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa-~-~~~~dv~lNlah~~~e  692 (1018)
T KOG2002|consen  626 KHQEKALQLYGKVLR-----------NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREA-T-SDFEDVWLNLAHCYVE  692 (1018)
T ss_pred             HHHHHHHHHHHHHHh-----------cCcchhhhccchhhhhhhccCchHHHHHHHHHHHH-H-hhCCceeeeHHHHHHH
Confidence            456789999988722           23447777788888899999999999999999988 2 2345678889999999


Q ss_pred             ccCHHHHHHHHHhcc-cCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHH
Q 036589          100 ARLLEHALQVFDEMP-SFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKII  166 (176)
Q Consensus       100 ~g~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~  166 (176)
                      .|++..|++.|+... ...-.-++...+.|-.++-++|.+.+|.+.+......-+. -...-||..+.
T Consensus       693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~-~~~v~FN~a~v  759 (1018)
T KOG2002|consen  693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPS-NTSVKFNLALV  759 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCc-cchHHhHHHHH
Confidence            999999999999766 4555567888999999999999999999988777666555 44566666543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.86  E-value=0.0011  Score=43.95  Aligned_cols=121  Identities=13%  Similarity=0.020  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC-CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccH--hHHHH
Q 036589           51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI-PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV--KSLNT  127 (176)
Q Consensus        51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~  127 (176)
                      ...|..++..+. .++...+...++.+....+-. ......-.+...+...|++++|...|+...+....|+.  ...-.
T Consensus        12 ~~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~   90 (145)
T PF09976_consen   12 SALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR   90 (145)
T ss_pred             HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence            456777777774 888999999999999873222 12233344668889999999999999999976633332  23445


Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589          128 LLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       128 ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      |...+...|++++|+..++......   .....+...-+.|.+.|+++
T Consensus        91 LA~~~~~~~~~d~Al~~L~~~~~~~---~~~~~~~~~Gdi~~~~g~~~  135 (145)
T PF09976_consen   91 LARILLQQGQYDEALATLQQIPDEA---FKALAAELLGDIYLAQGDYD  135 (145)
T ss_pred             HHHHHHHcCCHHHHHHHHHhccCcc---hHHHHHHHHHHHHHHCCCHH
Confidence            6788889999999999997743332   34556777888888888865

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.84  E-value=0.0009  Score=43.28  Aligned_cols=51  Identities=12%  Similarity=-0.001  Sum_probs=29.7

Q ss_pred             CCccHhHHHHHHHHHHhcCcHHHHHHHHHHHH-hccccccchHHHHHHHHHhh
Q 036589          118 VQRTVKSLNTLLNALLTCGKLDRMKELFISFN-LKAIAVLDGLCSNLKIIMND  169 (176)
Q Consensus       118 ~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~-~~~~~~p~~~t~~~li~~~~  169 (176)
                      .-|+..+..+++.+|+.+|++..|.++.+... ..+++ .+..+|..|++-..
T Consensus        48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~-i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIP-IPKEFWRRLLEWAY   99 (126)
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHH
Confidence            44566666666666666666666666666653 34455 55666666655443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=0.00026  Score=55.75  Aligned_cols=141  Identities=13%  Similarity=0.058  Sum_probs=105.6

Q ss_pred             HHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC---C--CCCchHH
Q 036589           15 LLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT---R--VIPEEII   89 (176)
Q Consensus        15 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~---g--~~~~~~~   89 (176)
                      -|.+.++...|.++|.+. ..          -.+-|+..++-+.-..-..+.+.+|..+|+......   +  ...-..+
T Consensus       389 ey~~t~n~kLAe~Ff~~A-~a----------i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~  457 (611)
T KOG1173|consen  389 EYMRTNNLKLAEKFFKQA-LA----------IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPT  457 (611)
T ss_pred             HHHHhccHHHHHHHHHHH-Hh----------cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHH
Confidence            466778888888888886 22          223366777777666667888999999888877320   1  1123456


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhh
Q 036589           90 FCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMND  169 (176)
Q Consensus        90 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~  169 (176)
                      ++.|-.+|.+.+.+++|+..|+...... +-+..++.++--.|...|+++.|.+.|.+-.  .+. ||-.+-+.|+..+.
T Consensus       458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~-p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  458 LNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALK-PDNIFISELLKLAI  533 (611)
T ss_pred             HHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcC-CccHHHHHHHHHHH
Confidence            8889999999999999999999887543 4588889999999999999999999998854  445 78777777776654


Q ss_pred             c
Q 036589          170 S  170 (176)
Q Consensus       170 ~  170 (176)
                      .
T Consensus       534 e  534 (611)
T KOG1173|consen  534 E  534 (611)
T ss_pred             H
Confidence            3

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.75  E-value=0.0014  Score=49.71  Aligned_cols=129  Identities=10%  Similarity=0.049  Sum_probs=93.4

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      .--.++.-+.++|+.++|.++.++..+..          ..|+..    ....+.+.++.+.-++..++-.+.-+-.|  
T Consensus       265 l~~~~a~~li~l~~~~~A~~~i~~~Lk~~----------~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--  328 (400)
T COG3071         265 LVVAYAERLIRLGDHDEAQEIIEDALKRQ----------WDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--  328 (400)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhc----------cChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCCh--
Confidence            34456777888888888888888763332          233311    22334456666666655555444424444  


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~  154 (176)
                      ..+.+|-..|.+.+.|.+|...|+...+.  .|+..+|+.+-++|.+.|+..+|.+++++-...-.+
T Consensus       329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~  393 (400)
T COG3071         329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQ  393 (400)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence            77888999999999999999999976655  599999999999999999999999999987644333

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.75  E-value=0.00099  Score=51.68  Aligned_cols=118  Identities=14%  Similarity=0.001  Sum_probs=94.1

Q ss_pred             HHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc-hHHHHHHH
Q 036589           16 LHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE-EIIFCNVI   94 (176)
Q Consensus        16 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~-~~~~~~li   94 (176)
                      +...|++++|+..++.+..+           .+-|+.-+......+.+.++..+|.+-++.+...   .|+ ...+-++-
T Consensus       316 ~~~~~~~d~A~~~l~~L~~~-----------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a  381 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIAA-----------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLA  381 (484)
T ss_pred             HHHhcccchHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHH
Confidence            44578888898888887322           2347888888899999999999999999999976   455 55566788


Q ss_pred             HHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 036589           95 SFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF  148 (176)
Q Consensus        95 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m  148 (176)
                      ++|.+.|++.+|+.+++...... +-|+..|..|-.+|...|+..++..-..+.
T Consensus       382 ~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~  434 (484)
T COG4783         382 QALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG  434 (484)
T ss_pred             HHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            99999999999999999887443 568889999999999888877666555443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.71  E-value=0.00077  Score=52.51  Aligned_cols=129  Identities=16%  Similarity=0.189  Sum_probs=70.1

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC----C
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR----V   83 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g----~   83 (176)
                      .|-.+.-+.-|.++++++...|++. ..          .++-.+..|+-....+...++|+.|.+.|+...+-..    +
T Consensus       430 ~~iQl~~a~Yr~~k~~~~m~~Fee~-kk----------kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~  498 (606)
T KOG0547|consen  430 AYIQLCCALYRQHKIAESMKTFEEA-KK----------KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI  498 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-HH----------hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence            3334444444556666666666665 22          2344555566666666666666666666666554310    0


Q ss_pred             --CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 036589           84 --IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN  149 (176)
Q Consensus        84 --~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~  149 (176)
                        .+....--.++-.-.+ +++..|++++++..+.. +.....|-.|-..-...|++++|+++|++-.
T Consensus       499 ~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa  564 (606)
T KOG0547|consen  499 IVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA  564 (606)
T ss_pred             cccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence              1111111122222222 66666666666665433 1233557777777778888888888887654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.71  E-value=0.0027  Score=52.64  Aligned_cols=132  Identities=10%  Similarity=-0.008  Sum_probs=99.5

Q ss_pred             ccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHH
Q 036589           19 QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYG   98 (176)
Q Consensus        19 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~   98 (176)
                      .|+.++|.+++.+..+.           .+-....|.+|...|-..|+.+++...+-..-..  .+-|...|-.+-....
T Consensus       152 rg~~eeA~~i~~EvIkq-----------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladls~  218 (895)
T KOG2076|consen  152 RGDLEEAEEILMEVIKQ-----------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADLSE  218 (895)
T ss_pred             hCCHHHHHHHHHHHHHh-----------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence            49999999999998333           2346788999999999999999988766554433  2345577888888888


Q ss_pred             hccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589           99 RARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI  165 (176)
Q Consensus        99 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li  165 (176)
                      ..|.+.+|.-+|.+..+.. +++...+.--...|-+.|+..+|.+.|.++.+...+ .|..-+-.+|
T Consensus       219 ~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~-~d~er~~d~i  283 (895)
T KOG2076|consen  219 QLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPP-VDIERIEDLI  283 (895)
T ss_pred             hcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCc-hhHHHHHHHH
Confidence            8899999999999888665 456666667778888899999999999888876554 4444444333

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.70  E-value=0.00033  Score=39.87  Aligned_cols=52  Identities=10%  Similarity=0.107  Sum_probs=30.4

Q ss_pred             hcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccC
Q 036589           63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF  116 (176)
Q Consensus        63 ~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  116 (176)
                      +.|++++|.++|+++... . +-+...+..+..+|.+.|++++|.++++++...
T Consensus         3 ~~~~~~~A~~~~~~~l~~-~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQR-N-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHH-T-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hccCHHHHHHHHHHHHHH-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            456666666666666655 1 124444445666666666666666666666643

...

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.68  E-value=0.0019  Score=51.64  Aligned_cols=127  Identities=14%  Similarity=0.097  Sum_probs=98.8

Q ss_pred             HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYN-LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      +.-+...|-+.|++++|+++++.. -+.           .|+ +..|..-...+...|++.+|.+.++..+.-.  .-|.
T Consensus       197 ~~~lAqhyd~~g~~~~Al~~Id~a-I~h-----------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD--~~DR  262 (517)
T PF12569_consen  197 LYFLAQHYDYLGDYEKALEYIDKA-IEH-----------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD--LADR  262 (517)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHH-Hhc-----------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC--hhhH
Confidence            355677888999999999999987 232           344 6678888899999999999999999999762  4577


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccH-----hHH---HHHHHHHHhcCcHHHHHHHHHHHH
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV-----KSL---NTLLNALLTCGKLDRMKELFISFN  149 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----~~~---~~ll~~~~~~g~~~~a~~l~~~m~  149 (176)
                      .+=+-....+.++|++++|.+++....+.+..|-.     .+.   .-.-.+|.+.|++..|++-|....
T Consensus       263 yiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~  332 (517)
T PF12569_consen  263 YINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVL  332 (517)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            77777889999999999999999999876654422     222   344578889999888887665543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.68  E-value=0.0033  Score=41.55  Aligned_cols=112  Identities=13%  Similarity=0.149  Sum_probs=73.6

Q ss_pred             cHHHHHHHHH---HHHhcCChHHHHHHHHHHhhcC-C-CCCch------------------HHHHHHHHHHHhccCHHHH
Q 036589           50 NLLHYDLIIT---KLGRAKMFDEMQQILHQLKHDT-R-VIPEE------------------IIFCNVISFYGRARLLEHA  106 (176)
Q Consensus        50 ~~~~y~~li~---~~~~~g~~~~a~~~~~~m~~~~-g-~~~~~------------------~~~~~li~~~~~~g~~~~a  106 (176)
                      |...|..++.   .....++.+.+...++++.... | +-++.                  .....++..+...|++++|
T Consensus         2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a   81 (146)
T PF03704_consen    2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEA   81 (146)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence            3444555533   2345678888888887777652 1 22221                  2223456777789999999


Q ss_pred             HHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHH-----hccccccchHHHHH
Q 036589          107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN-----LKAIAVLDGLCSNL  163 (176)
Q Consensus       107 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~-----~~~~~~p~~~t~~~  163 (176)
                      +.+.+.+.... +.+...|-.+|.+|...|+..+|.++|+.+.     +.|+. |+..+-..
T Consensus        82 ~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~-Ps~~~~~l  141 (146)
T PF03704_consen   82 LRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE-PSPETRAL  141 (146)
T ss_dssp             HHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS-----HHHHHH
T ss_pred             HHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC-cCHHHHHH
Confidence            99999998654 5588899999999999999999999998874     46998 98876543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.64  E-value=0.00086  Score=51.23  Aligned_cols=102  Identities=11%  Similarity=-0.021  Sum_probs=80.5

Q ss_pred             HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHH
Q 036589           13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCN   92 (176)
Q Consensus        13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~   92 (176)
                      ...+...|++++|+++|++.. ..          .+-+...|..+..+|.+.|++++|...+++..+..  ..+...|..
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al-~~----------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~   75 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAI-DL----------DPNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLR   75 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHH-Hh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHH
Confidence            456677899999999999983 32          12367788889999999999999999999998762  235667888


Q ss_pred             HHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589           93 VISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL  129 (176)
Q Consensus        93 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  129 (176)
                      +..+|...|++++|+..|+...+..  |+-..+...+
T Consensus        76 lg~~~~~lg~~~eA~~~~~~al~l~--P~~~~~~~~l  110 (356)
T PLN03088         76 KGTACMKLEEYQTAKAALEKGASLA--PGDSRFTKLI  110 (356)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence            8999999999999999999988654  5544444444

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.64  E-value=3.6e-05  Score=46.05  Aligned_cols=82  Identities=15%  Similarity=0.130  Sum_probs=58.8

Q ss_pred             ccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHH
Q 036589           19 QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYG   98 (176)
Q Consensus        19 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~   98 (176)
                      .|+++.|+.+|+++ ...        .+..++...+-.+..++.+.|++++|..+++.....  . .+....-.+..+|.
T Consensus         2 ~~~y~~Ai~~~~k~-~~~--------~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~--~-~~~~~~~l~a~~~~   69 (84)
T PF12895_consen    2 QGNYENAIKYYEKL-LEL--------DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLD--P-SNPDIHYLLARCLL   69 (84)
T ss_dssp             TT-HHHHHHHHHHH-HHH--------HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHH--H-CHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHH-HHH--------CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCC--C-CCHHHHHHHHHHHH
Confidence            57899999999998 332        111224555666899999999999999999992222  2 23344445689999


Q ss_pred             hccCHHHHHHHHHh
Q 036589           99 RARLLEHALQVFDE  112 (176)
Q Consensus        99 ~~g~~~~a~~~~~~  112 (176)
                      +.|++++|+++|++
T Consensus        70 ~l~~y~eAi~~l~~   83 (84)
T PF12895_consen   70 KLGKYEEAIKALEK   83 (84)
T ss_dssp             HTT-HHHHHHHHHH
T ss_pred             HhCCHHHHHHHHhc
Confidence            99999999999975

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=97.64  E-value=0.0013  Score=54.38  Aligned_cols=124  Identities=10%  Similarity=0.074  Sum_probs=94.5

Q ss_pred             CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHH
Q 036589           47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN  126 (176)
Q Consensus        47 ~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  126 (176)
                      ..-++..|-.+..++...|++.+|.++|..+... ...-+...|--+..+|-..|..++|++.|+..+... +-+...--
T Consensus       410 ~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri  487 (895)
T KOG2076|consen  410 VSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARI  487 (895)
T ss_pred             hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhh
Confidence            3446677889999999999999999999999988 455568899999999999999999999999988543 22444455


Q ss_pred             HHHHHHHhcCcHHHHHHHHHHHH--------hccccccchHHHHHHHHHhhcccc
Q 036589          127 TLLNALLTCGKLDRMKELFISFN--------LKAIAVLDGLCSNLKIIMNDSQVR  173 (176)
Q Consensus       127 ~ll~~~~~~g~~~~a~~l~~~m~--------~~~~~~p~~~t~~~li~~~~~~g~  173 (176)
                      .|-..+-+.|+.++|.+.+..+.        ...+. |+...--...+.+...|+
T Consensus       488 ~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~-~e~ri~~~r~d~l~~~gk  541 (895)
T KOG2076|consen  488 TLASLYQQLGNHEKALETLEQIINPDGRNAEACAWE-PERRILAHRCDILFQVGK  541 (895)
T ss_pred             hHHHHHHhcCCHHHHHHHHhcccCCCccchhhcccc-HHHHHHHHHHHHHHHhhh
Confidence            66677889999999999998864        23344 555444444444544444

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.62  E-value=0.0005  Score=38.78  Aligned_cols=57  Identities=11%  Similarity=0.042  Sum_probs=35.9

Q ss_pred             HHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589           94 ISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLK  151 (176)
Q Consensus        94 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~  151 (176)
                      ...+.+.|++++|+..|++..+.. +-+...+..+-.++...|++++|..+|++..+.
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            345666677777777777766544 225555666666667777777777777766553

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.61  E-value=0.002  Score=43.91  Aligned_cols=84  Identities=10%  Similarity=-0.033  Sum_probs=62.8

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRY-NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~   86 (176)
                      .+..+...+.+.|++++|...|++.....        +. .+ ....|..+...+.+.|++++|...+++..+. . .-+
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~-p~~  105 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLE--------ED-PNDRSYILYNMGIIYASNGEHDKALEYYHQALEL-N-PKQ  105 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--------hc-cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-ccc
Confidence            46667778888999999999999872221        11 11 2467888999999999999999999999876 2 224


Q ss_pred             hHHHHHHHHHHHhccC
Q 036589           87 EIIFCNVISFYGRARL  102 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~  102 (176)
                      ...+..+..+|...|+
T Consensus       106 ~~~~~~lg~~~~~~g~  121 (172)
T PRK02603        106 PSALNNIAVIYHKRGE  121 (172)
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            5566667777777776

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.61  E-value=0.0018  Score=43.89  Aligned_cols=95  Identities=12%  Similarity=-0.132  Sum_probs=67.5

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      .|..+...+...|++++|+..|+......        ........+|..+...+...|++++|.+.++...+..  +...
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~--------~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~  106 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMRLE--------IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLP  106 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcc--------ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcH
Confidence            45667777888999999999999972221        1111134588889999999999999999999988652  2334


Q ss_pred             HHHHHHHHHHH-------hccCHHHHHHHHHh
Q 036589           88 IIFCNVISFYG-------RARLLEHALQVFDE  112 (176)
Q Consensus        88 ~~~~~li~~~~-------~~g~~~~a~~~~~~  112 (176)
                      .++..+...+.       +.|+++.|...+++
T Consensus       107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033        107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence            55666666666       77787755555543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=97.55  E-value=0.0022  Score=53.68  Aligned_cols=151  Identities=11%  Similarity=0.045  Sum_probs=107.8

Q ss_pred             CCCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036589            2 NKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT   81 (176)
Q Consensus         2 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~   81 (176)
                      +.-+|+..+.|-+.|.-.|++..++.+...+....        ..-..-..+|..+..+|-..|++++|...|.+..+. 
T Consensus       266 n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t--------~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~-  336 (1018)
T KOG2002|consen  266 NNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT--------ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA-  336 (1018)
T ss_pred             cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-
Confidence            34578889999999999999999999988873332        121233456888999999999999999999988865 


Q ss_pred             CCCCchHHH--HHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcC----cHHHHHHHHHHHHhccccc
Q 036589           82 RVIPEEIIF--CNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCG----KLDRMKELFISFNLKAIAV  155 (176)
Q Consensus        82 g~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g----~~~~a~~l~~~m~~~~~~~  155 (176)
                        .++.+++  --|.+.|.+.|+++.+...|+...... +-+..+..+|-..|+..+    ..++|..++.+..+.... 
T Consensus       337 --~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~-  412 (1018)
T KOG2002|consen  337 --DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV-  412 (1018)
T ss_pred             --CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc-
Confidence              3444344  347899999999999999999988543 334555555556666654    567777777766655432 


Q ss_pred             cchHHHHHHHH
Q 036589          156 LDGLCSNLKII  166 (176)
Q Consensus       156 p~~~t~~~li~  166 (176)
                       |...|-.+-.
T Consensus       413 -d~~a~l~laq  422 (1018)
T KOG2002|consen  413 -DSEAWLELAQ  422 (1018)
T ss_pred             -cHHHHHHHHH
Confidence             5555544433

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.54  E-value=0.0049  Score=48.87  Aligned_cols=157  Identities=11%  Similarity=0.026  Sum_probs=107.3

Q ss_pred             CCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHH---------------------
Q 036589            4 AKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG---------------------   62 (176)
Q Consensus         4 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~---------------------   62 (176)
                      .++++|-++--.|.-.|+.++|.+.|... ..-.       +.+.|   .|-....+|+                     
T Consensus       310 ~~a~sW~aVg~YYl~i~k~seARry~SKa-t~lD-------~~fgp---aWl~fghsfa~e~EhdQAmaaY~tAarl~~G  378 (611)
T KOG1173|consen  310 SKALSWFAVGCYYLMIGKYSEARRYFSKA-TTLD-------PTFGP---AWLAFGHSFAGEGEHDQAMAAYFTAARLMPG  378 (611)
T ss_pred             CCCcchhhHHHHHHHhcCcHHHHHHHHHH-hhcC-------ccccH---HHHHHhHHhhhcchHHHHHHHHHHHHHhccC
Confidence            46789999988888899999999999886 3332       23333   2222333333                     


Q ss_pred             -------------hcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhccc----CC--CCccHh
Q 036589           63 -------------RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS----FN--VQRTVK  123 (176)
Q Consensus        63 -------------~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~--~~p~~~  123 (176)
                                   +.+.+..|.+.|.+....  .+-|....+-+--.....+.+.+|..+|+..+.    .+  ...-..
T Consensus       379 ~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p  456 (611)
T KOG1173|consen  379 CHLPSLYLGMEYMRTNNLKLAEKFFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEP  456 (611)
T ss_pred             CcchHHHHHHHHHHhccHHHHHHHHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhH
Confidence                         345556666666655533  233445555555555567889999999887651    11  112445


Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589          124 SLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       124 ~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      +++.|-..|.+.+++++|+..|+........  |..++..+--.|.-.|.+|
T Consensus       457 ~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k--~~~~~asig~iy~llgnld  506 (611)
T KOG1173|consen  457 TLNNLGHAYRKLNKYEEAIDYYQKALLLSPK--DASTHASIGYIYHLLGNLD  506 (611)
T ss_pred             HHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC--chhHHHHHHHHHHHhcChH
Confidence            6888899999999999999999999887776  7888888877777777664

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.51  E-value=0.0027  Score=49.37  Aligned_cols=108  Identities=11%  Similarity=0.031  Sum_probs=64.3

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcC
Q 036589           57 IITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCG  136 (176)
Q Consensus        57 li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g  136 (176)
                      +.+.|-...+..+|.+++-+...-  +.-|....+-|...|-+.|+-.+|.+++-+--+ =++.|..+...|-..|....
T Consensus       564 ianiye~led~aqaie~~~q~~sl--ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtq  640 (840)
T KOG2003|consen  564 IANIYELLEDPAQAIELLMQANSL--IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQ  640 (840)
T ss_pred             HHHHHHHhhCHHHHHHHHHHhccc--CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhH
Confidence            333333344444444444333321  233444555566666666666666665543321 12446666777777777777


Q ss_pred             cHHHHHHHHHHHHhccccccchHHHHHHHHHhhc
Q 036589          137 KLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDS  170 (176)
Q Consensus       137 ~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~  170 (176)
                      .+++++..|++.  .-+. |+..-|..||..|.|
T Consensus       641 f~ekai~y~eka--aliq-p~~~kwqlmiasc~r  671 (840)
T KOG2003|consen  641 FSEKAINYFEKA--ALIQ-PNQSKWQLMIASCFR  671 (840)
T ss_pred             HHHHHHHHHHHH--HhcC-ccHHHHHHHHHHHHH
Confidence            788888888763  3456 999999999988874

>PLN02789 farnesyltranstransferase

Probab=97.50  E-value=0.0088  Score=45.06  Aligned_cols=147  Identities=10%  Similarity=0.011  Sum_probs=105.9

Q ss_pred             HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCCCCch
Q 036589            9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAK-MFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      +..+-..+...++.++|+.+.+++. ..          .+-+..+|+.--.++...| .++++...++++.+. . .-+.
T Consensus        40 ~~~~ra~l~~~e~serAL~lt~~aI-~l----------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~-n-pkny  106 (320)
T PLN02789         40 MDYFRAVYASDERSPRALDLTADVI-RL----------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED-N-PKNY  106 (320)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHH-HH----------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH-C-Ccch
Confidence            3455566666789999999999872 21          1124445665556666777 579999999999977 2 2344


Q ss_pred             HHHHHHHHHHHhccCH--HHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589           88 IIFCNVISFYGRARLL--EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI  165 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~--~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li  165 (176)
                      .+|+..-..+.+.|+.  ++++.+++++.+.. +-|..+|+.---.+.+.|+++++++.++++.+.++.  +...|+...
T Consensus       107 qaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~--N~sAW~~R~  183 (320)
T PLN02789        107 QIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR--NNSAWNQRY  183 (320)
T ss_pred             HHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC--chhHHHHHH
Confidence            4577665556666663  67888888888655 457888998888888999999999999999998876  666776665


Q ss_pred             HHhhcc
Q 036589          166 IMNDSQ  171 (176)
Q Consensus       166 ~~~~~~  171 (176)
                      ..+.+.
T Consensus       184 ~vl~~~  189 (320)
T PLN02789        184 FVITRS  189 (320)
T ss_pred             HHHHhc
Confidence            555444

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.47  E-value=0.00061  Score=38.70  Aligned_cols=63  Identities=14%  Similarity=0.105  Sum_probs=49.0

Q ss_pred             HhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHH
Q 036589           98 GRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLK  164 (176)
Q Consensus        98 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~l  164 (176)
                      .+.|++++|+++|+++.+.. +-+...+-.+..+|.+.|++++|.++++.+....   |+...|..+
T Consensus         2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~---~~~~~~~~l   64 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD---PDNPEYQQL   64 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG---TTHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCHHHHHHH
Confidence            46799999999999998654 3377778889999999999999999999988753   443444433

...

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.42  E-value=0.0058  Score=53.24  Aligned_cols=131  Identities=11%  Similarity=0.081  Sum_probs=87.6

Q ss_pred             CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCC---cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036589            5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRY---NLLHYDLIITKLGRAKMFDEMQQILHQLKHDT   81 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~---~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~   81 (176)
                      +.+.|-.-|......+++++|.+++++.. ..        -+++-   ....|.++++.-..-|.-+...++|++..+. 
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL-~t--------IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy- 1526 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERAL-KT--------INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY- 1526 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHh-hh--------CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-
Confidence            45678888888888889888888888872 21        22221   3446666776666667667777777777765 


Q ss_pred             CCCCchHHHHHHHHHHHhccCHHHHHHHHHhcc-cCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 036589           82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMP-SFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN  149 (176)
Q Consensus        82 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~  149 (176)
                       . --...|..|...|.+.+.+++|.++|+.|. ..|  -....|..++..+.++++-+.|.+++.+..
T Consensus      1527 -c-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1527 -C-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred             -c-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence             1 123456677777888888888888888776 333  355667777777777766666666665543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.42  E-value=0.0012  Score=37.56  Aligned_cols=60  Identities=17%  Similarity=0.190  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcC-cHHHHHHHHHHHH
Q 036589           89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCG-KLDRMKELFISFN  149 (176)
Q Consensus        89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~l~~~m~  149 (176)
                      +|..+-..+...|++++|+..|++..+.. +-+...|..+-.++.+.| ++++|++.|+...
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al   65 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL   65 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            34444444444444444444444444332 123344444444444444 3444444444433

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.41  E-value=0.0075  Score=48.40  Aligned_cols=138  Identities=7%  Similarity=-0.124  Sum_probs=91.1

Q ss_pred             CCCCCHHHHHHHHHhcc-----ChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcC--------ChHHH
Q 036589            4 AKPTSPFRLASLLHLQK-----HPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAK--------MFDEM   70 (176)
Q Consensus         4 p~~~~~~~l~~~~~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g--------~~~~a   70 (176)
                      .++..|...+++.....     +..+|.++|++. -+..       ++   ....|..+..++....        +...+
T Consensus       335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~A-i~ld-------P~---~a~a~A~la~~~~~~~~~~~~~~~~l~~a  403 (517)
T PRK10153        335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEI-LKSE-------PD---FTYAQAEKALADIVRHSQQPLDEKQLAAL  403 (517)
T ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HHhC-------CC---cHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence            34456777777655432     366899999998 3321       22   3455555544443321        12233


Q ss_pred             HHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589           71 QQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL  150 (176)
Q Consensus        71 ~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~  150 (176)
                      .+..++.........+...|..+--.....|++++|...|++..+.+  |+...|..+-..+...|+.++|.+.+.+...
T Consensus       404 ~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~  481 (517)
T PRK10153        404 STELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN  481 (517)
T ss_pred             HHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            33333332221123344667777666667899999999999999776  7888999999999999999999999999876


Q ss_pred             cccc
Q 036589          151 KAIA  154 (176)
Q Consensus       151 ~~~~  154 (176)
                      ....
T Consensus       482 L~P~  485 (517)
T PRK10153        482 LRPG  485 (517)
T ss_pred             cCCC
Confidence            6554

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.34  E-value=0.0018  Score=42.85  Aligned_cols=71  Identities=11%  Similarity=0.132  Sum_probs=52.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcc-----cCCCCccHhHHH
Q 036589           54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP-----SFNVQRTVKSLN  126 (176)
Q Consensus        54 y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~~~  126 (176)
                      ...++..+...|++++|.++.+.+...  -+.+...|..+|.+|...|+..+|.++|+.+.     +.|+.|+..+-.
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~  140 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA  140 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence            344455566789999999999999987  35588899999999999999999999998874     478888876543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.34  E-value=0.0013  Score=37.83  Aligned_cols=58  Identities=14%  Similarity=0.094  Sum_probs=32.8

Q ss_pred             HHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q 036589           95 SFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI  153 (176)
Q Consensus        95 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~  153 (176)
                      ..|.+.+++++|+++++.+.... +.+...|...-.++.+.|++++|.+.|+...+.+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP   60 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            34555666666666666665443 22444455555666666666666666666655433

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.31  E-value=0.0059  Score=47.78  Aligned_cols=153  Identities=11%  Similarity=0.103  Sum_probs=81.6

Q ss_pred             CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036589            5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRY-NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV   83 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~   83 (176)
                      ++.+|.+--..+.-.+++++|..=|+.. ..           +.| +...|--+--+.-+.+.+++++..|++.++.  +
T Consensus       393 n~dvYyHRgQm~flL~q~e~A~aDF~Ka-i~-----------L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--F  458 (606)
T KOG0547|consen  393 NPDVYYHRGQMRFLLQQYEEAIADFQKA-IS-----------LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--F  458 (606)
T ss_pred             CCchhHhHHHHHHHHHHHHHHHHHHHHH-hh-----------cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--C
Confidence            3444444444444455555555555554 11           111 3333433333333666777777777777766  4


Q ss_pred             CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCC-----CCccHhHH--HHHHHHHHhcCcHHHHHHHHHHHHhcccccc
Q 036589           84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFN-----VQRTVKSL--NTLLNALLTCGKLDRMKELFISFNLKAIAVL  156 (176)
Q Consensus        84 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~--~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p  156 (176)
                      +--...||-....+...+++++|++.|+...+..     +-.+..++  -.++ .+--.+++.+|..|++...+....  
T Consensus       459 P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpk--  535 (606)
T KOG0547|consen  459 PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELDPK--  535 (606)
T ss_pred             CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccCch--
Confidence            4445666767777777777777777777655321     11111111  1111 111347777777777777665554  


Q ss_pred             chHHHHHHHHHhhccccC
Q 036589          157 DGLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       157 ~~~t~~~li~~~~~~g~~  174 (176)
                      ....|..|-..-...|+.
T Consensus       536 ce~A~~tlaq~~lQ~~~i  553 (606)
T KOG0547|consen  536 CEQAYETLAQFELQRGKI  553 (606)
T ss_pred             HHHHHHHHHHHHHHHhhH
Confidence            445555555555544443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.31  E-value=0.017  Score=36.98  Aligned_cols=106  Identities=11%  Similarity=-0.032  Sum_probs=78.9

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCCCc--hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCcc---HhHH-HHHHH
Q 036589           57 IITKLGRAKMFDEMQQILHQLKHDTRVIPE--EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRT---VKSL-NTLLN  130 (176)
Q Consensus        57 li~~~~~~g~~~~a~~~~~~m~~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~-~~ll~  130 (176)
                      +-.++-..|+.++|..+|++.... |....  ...+-.+-..|...|++++|+.+|++....-  |+   .... ..+--
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al   83 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLAL   83 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHH
Confidence            445667889999999999999998 76655  3455667888999999999999999887532  43   2222 22335


Q ss_pred             HHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhc
Q 036589          131 ALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDS  170 (176)
Q Consensus       131 ~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~  170 (176)
                      ++...|+.++|.+.+-....     ++...|.-=|..|+.
T Consensus        84 ~L~~~gr~~eAl~~~l~~la-----~~~~~y~ra~~~ya~  118 (120)
T PF12688_consen   84 ALYNLGRPKEALEWLLEALA-----ETLPRYRRAIRFYAD  118 (120)
T ss_pred             HHHHCCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHh
Confidence            67788999999999877665     455577777777754

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.30  E-value=0.0017  Score=36.57  Aligned_cols=58  Identities=10%  Similarity=0.076  Sum_probs=49.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccC
Q 036589           57 IITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF  116 (176)
Q Consensus        57 li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  116 (176)
                      +...+.+.|++++|.+.|+++.+. . .-+...+..+-.++...|++++|...|++..+.
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~-~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQ-D-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCC-S-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            456788999999999999999988 3 337778888999999999999999999998743

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.27  E-value=0.004  Score=52.64  Aligned_cols=133  Identities=6%  Similarity=-0.008  Sum_probs=92.4

Q ss_pred             CCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036589            4 AKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV   83 (176)
Q Consensus         4 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~   83 (176)
                      .+...|..|+..+.+.+++++|.++.+.. ...        .+-.+....|.  ...+.+.++.+++..+  .+.....-
T Consensus        29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~-l~~--------~P~~i~~yy~~--G~l~~q~~~~~~~~lv--~~l~~~~~   95 (906)
T PRK14720         29 SKFKELDDLIDAYKSENLTDEAKDICEEH-LKE--------HKKSISALYIS--GILSLSRRPLNDSNLL--NLIDSFSQ   95 (906)
T ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHh--------CCcceehHHHH--HHHHHhhcchhhhhhh--hhhhhccc
Confidence            34456888999999999999999999875 221        22233333333  3355555555555444  22222010


Q ss_pred             -----------------CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHH
Q 036589           84 -----------------IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI  146 (176)
Q Consensus        84 -----------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~  146 (176)
                                       .-+...+-.+..+|-+.|+.++|.++++++.+.. .-|....|.+...|... ++++|.+++.
T Consensus        96 ~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~  173 (906)
T PRK14720         96 NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK  173 (906)
T ss_pred             ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence                             1122455568888999999999999999999777 56899999999999999 9999998888


Q ss_pred             HHHhc
Q 036589          147 SFNLK  151 (176)
Q Consensus       147 ~m~~~  151 (176)
                      +..+.
T Consensus       174 KAV~~  178 (906)
T PRK14720        174 KAIYR  178 (906)
T ss_pred             HHHHH
Confidence            77654

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.26  E-value=0.014  Score=42.00  Aligned_cols=143  Identities=10%  Similarity=-0.014  Sum_probs=89.1

Q ss_pred             ccChhHHHHhhcCCCCCCCCCCCCCCCC-CCCcHH-HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHH-HHHHH
Q 036589           19 QKHPKLALQLFKNPNPNANDTEAPPLKP-FRYNLL-HYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIF-CNVIS   95 (176)
Q Consensus        19 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~-~~li~   95 (176)
                      ..+.++.++++.++.....       .+ ..++.. .|-.++.+....|+.+.|..+++++.....-.+-+.-+ ..++ 
T Consensus        25 ~rnseevv~l~~~~~~~~k-------~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~l-   96 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSK-------SGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLL-   96 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhh-------hcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHH-
Confidence            4678888999888833321       23 445554 46677777888899999999999988773222222222 2233 


Q ss_pred             HHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccC
Q 036589           96 FYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRV  174 (176)
Q Consensus        96 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~  174 (176)
                        -..|++++|+++++.+.+.. +.|.+++--=+-..-..|+-.+|++-+.+..+.=.  .|...|--+-+.|...|++
T Consensus        97 --Ea~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~--~D~EAW~eLaeiY~~~~~f  170 (289)
T KOG3060|consen   97 --EATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM--NDQEAWHELAEIYLSEGDF  170 (289)
T ss_pred             --HHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHhHhHH
Confidence              34788999999999888655 44555555555555555555566655555554322  3666666666666655544

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=97.25  E-value=0.003  Score=46.23  Aligned_cols=69  Identities=12%  Similarity=0.146  Sum_probs=39.7

Q ss_pred             HHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcH----------------HHHHHHHHHHHhccccccchHHHHHHHH
Q 036589          103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKL----------------DRMKELFISFNLKAIAVLDGLCSNLKII  166 (176)
Q Consensus       103 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~----------------~~a~~l~~~m~~~~~~~p~~~t~~~li~  166 (176)
                      ++=....++.|.+.|+..|..+|+.||+.+-+...+                +=+++++++|...|+. ||-.+-..|++
T Consensus        88 veFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVm-PdkE~e~~lvn  166 (406)
T KOG3941|consen   88 VEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVM-PDKEIEDILVN  166 (406)
T ss_pred             HHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCC-CchHHHHHHHH
Confidence            333444445555555555555555555555443321                2255677777777777 77777777777


Q ss_pred             Hhhccc
Q 036589          167 MNDSQV  172 (176)
Q Consensus       167 ~~~~~g  172 (176)
                      ++.+.+
T Consensus       167 ~FGr~~  172 (406)
T KOG3941|consen  167 AFGRWN  172 (406)
T ss_pred             Hhcccc
Confidence            776654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.24  E-value=0.027  Score=40.88  Aligned_cols=126  Identities=13%  Similarity=0.120  Sum_probs=93.0

Q ss_pred             HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCCCCchH
Q 036589           13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGR----AKMFDEMQQILHQLKHDTRVIPEEI   88 (176)
Q Consensus        13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~~g~~~~~~   88 (176)
                      ...+.+..+++.|.+.++.| ....            +-.+.+-|.+++.+    .+.+.+|.-+|++|.+.  ..|+.-
T Consensus       144 VqI~lk~~r~d~A~~~lk~m-q~id------------ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--~~~T~~  208 (299)
T KOG3081|consen  144 VQILLKMHRFDLAEKELKKM-QQID------------EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--TPPTPL  208 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-Hccc------------hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--cCCChH
Confidence            45567788899999999999 5542            56677766666654    45689999999999975  678999


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCc-HHHHHHHHHHHHhcccc
Q 036589           89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGK-LDRMKELFISFNLKAIA  154 (176)
Q Consensus        89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-~~~a~~l~~~m~~~~~~  154 (176)
                      +.|-..-++...|++++|..++++....... +..+...+|-+-...|. .+-..+.+..++.....
T Consensus       209 llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~  274 (299)
T KOG3081|consen  209 LLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLSHPE  274 (299)
T ss_pred             HHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence            9999999999999999999999999865432 45555555555555555 44556677777665444

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.24  E-value=0.021  Score=45.78  Aligned_cols=145  Identities=10%  Similarity=0.103  Sum_probs=99.8

Q ss_pred             CCCHHHHHHHHHhccChhHHHHhhcCCCCC---CCCCC-CCCCCCCCCcHHHH--HHHHHHHHhcCChHHHHHHHHHHhh
Q 036589            6 PTSPFRLASLLHLQKHPKLALQLFKNPNPN---ANDTE-APPLKPFRYNLLHY--DLIITKLGRAKMFDEMQQILHQLKH   79 (176)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~y--~~li~~~~~~g~~~~a~~~~~~m~~   79 (176)
                      |-.|+.|-..|....+..-..+++..+...   .+... ......-+|+...|  .-+.+.|-..|++++|....++...
T Consensus       143 PslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~  222 (517)
T PF12569_consen  143 PSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE  222 (517)
T ss_pred             chHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence            345666666666555555555555554111   10000 00012334555444  5567778899999999999999886


Q ss_pred             cCCCCCc-hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589           80 DTRVIPE-EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus        80 ~~g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~  154 (176)
                      .   .|+ ...|..-.+.|-+.|++.+|.+.++...+.. .-|...=+-....+.++|++++|.+++......+..
T Consensus       223 h---tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~  294 (517)
T PF12569_consen  223 H---TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVD  294 (517)
T ss_pred             c---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCC
Confidence            6   455 5577778899999999999999999988655 236666667778889999999999999988765543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.23  E-value=0.0029  Score=35.98  Aligned_cols=64  Identities=11%  Similarity=0.023  Sum_probs=56.1

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcc-CHHHHHHHHHhccc
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRAR-LLEHALQVFDEMPS  115 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~  115 (176)
                      +...|..+...+...|++++|...|++..+. . +-+...|..+-.+|.+.| ++++|++.|++..+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL-D-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-S-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-C-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            5778999999999999999999999999987 2 346778888999999999 79999999988764

...

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.23  E-value=0.001  Score=54.51  Aligned_cols=112  Identities=19%  Similarity=0.256  Sum_probs=78.2

Q ss_pred             HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHH
Q 036589           13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCN   92 (176)
Q Consensus        13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~   92 (176)
                      +.+-.+...+.+|+.+++.+ ..+.           .-.--|..+.+-|+..|+++.|+++|.+.-          .++-
T Consensus       739 ieaai~akew~kai~ildni-qdqk-----------~~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~d  796 (1636)
T KOG3616|consen  739 IEAAIGAKEWKKAISILDNI-QDQK-----------TASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKD  796 (1636)
T ss_pred             HHHHhhhhhhhhhHhHHHHh-hhhc-----------cccccchHHHHHhccchhHHHHHHHHHhcc----------hhHH
Confidence            34455567777888887777 4431           123347777888899999999988886543          3467


Q ss_pred             HHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 036589           93 VISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF  148 (176)
Q Consensus        93 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m  148 (176)
                      -|.+|.++|+|++|.++-++...  -..++..|-+-..-+-++|++.+|.+++-..
T Consensus       797 ai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti  850 (1636)
T KOG3616|consen  797 AIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITI  850 (1636)
T ss_pred             HHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence            78889999999999888777652  2345566666666677788888887776443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.19  E-value=0.015  Score=46.12  Aligned_cols=119  Identities=13%  Similarity=0.210  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC-chHHHHHHHHHHHhccCHHHHHHHHHh-cccCCCCccHhHHHHH
Q 036589           51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP-EEIIFCNVISFYGRARLLEHALQVFDE-MPSFNVQRTVKSLNTL  128 (176)
Q Consensus        51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~-m~~~~~~p~~~~~~~l  128 (176)
                      ..+|...|+...+..-+..|..+|.+.++. +..+ ++...+++|..|| .++...|.++|+. |+..|  -++.--+..
T Consensus       366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~Y  441 (656)
T KOG1914|consen  366 TLVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKY  441 (656)
T ss_pred             ceehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHH
Confidence            346777788888888899999999999999 6666 8888999999886 5788999999995 55554  445556788


Q ss_pred             HHHHHhcCcHHHHHHHHHHHHhccccccc--hHHHHHHHHHhhccccC
Q 036589          129 LNALLTCGKLDRMKELFISFNLKAIAVLD--GLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       129 l~~~~~~g~~~~a~~l~~~m~~~~~~~p~--~~t~~~li~~~~~~g~~  174 (176)
                      ++-+.+.|+=..+..||++....+++ ||  ...|..+|+-=..-|++
T Consensus       442 ldfL~~lNdd~N~R~LFEr~l~s~l~-~~ks~~Iw~r~l~yES~vGdL  488 (656)
T KOG1914|consen  442 LDFLSHLNDDNNARALFERVLTSVLS-ADKSKEIWDRMLEYESNVGDL  488 (656)
T ss_pred             HHHHHHhCcchhHHHHHHHHHhccCC-hhhhHHHHHHHHHHHHhcccH
Confidence            89999999999999999999888665 55  57899998877776654

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=97.17  E-value=0.011  Score=43.31  Aligned_cols=102  Identities=11%  Similarity=0.149  Sum_probs=81.7

Q ss_pred             CCCcHHHHHHHHHHHHhc-----CChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccC----------------HHH
Q 036589           47 FRYNLLHYDLIITKLGRA-----KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL----------------LEH  105 (176)
Q Consensus        47 ~~~~~~~y~~li~~~~~~-----g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~----------------~~~  105 (176)
                      -.-|-.+|-+++..+...     ++++-...-++.|++- |+..|..+|+.||+.+-+-.-                -+-
T Consensus        63 ~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~ey-GVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C  141 (406)
T KOG3941|consen   63 EKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEY-GVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNC  141 (406)
T ss_pred             ccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHh-cchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhH
Confidence            344777888888888754     6677777888899988 999999999999988765321                245


Q ss_pred             HHHHHHhcccCCCCccHhHHHHHHHHHHhcCcH-HHHHHHHHHHH
Q 036589          106 ALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKL-DRMKELFISFN  149 (176)
Q Consensus       106 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~-~~a~~l~~~m~  149 (176)
                      ++.++++|...|+.||-.+-..|+++|++.+.. .+..++.--|.
T Consensus       142 ~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP  186 (406)
T KOG3941|consen  142 AIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP  186 (406)
T ss_pred             HHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence            789999999999999999999999999998873 45556655554

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.15  E-value=0.013  Score=44.04  Aligned_cols=107  Identities=18%  Similarity=0.124  Sum_probs=83.7

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      |.+..|..+...|+...|.++-++..              .|+-.-|-..+.++++.++|++.+++-.. ++      ..
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk--------------v~dkrfw~lki~aLa~~~~w~eL~~fa~s-kK------sP  237 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFK--------------VPDKRFWWLKIKALAENKDWDELEKFAKS-KK------SP  237 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcC--------------CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-CC------CC
Confidence            66777888888999999999887772              25888899999999999999988776443 21      23


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHH
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF  145 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~  145 (176)
                      +-|-.++.+|.+.|...+|..+...+.          +..-+..|.+.|++.+|.+.-
T Consensus       238 IGyepFv~~~~~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A  285 (319)
T PF04840_consen  238 IGYEPFVEACLKYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEA  285 (319)
T ss_pred             CChHHHHHHHHHCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHH
Confidence            678888999999999999998888732          356678888899988887653

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.15  E-value=0.0027  Score=37.10  Aligned_cols=60  Identities=17%  Similarity=0.163  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhc---CCC-CCc-hHHHHHHHHHHHhccCHHHHHHHHHh
Q 036589           53 HYDLIITKLGRAKMFDEMQQILHQLKHD---TRV-IPE-EIIFCNVISFYGRARLLEHALQVFDE  112 (176)
Q Consensus        53 ~y~~li~~~~~~g~~~~a~~~~~~m~~~---~g~-~~~-~~~~~~li~~~~~~g~~~~a~~~~~~  112 (176)
                      +|+.+...|...|++++|+..|++..+-   .|- .|+ ..+++.+-.+|.+.|++++|++.|++
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~   71 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK   71 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4455555555555555555555544422   111 111 33444455555555555555555544

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.14  E-value=0.02  Score=41.94  Aligned_cols=101  Identities=9%  Similarity=0.026  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch----HHHHHHHHHHHhccCHHHHHHHHHhcccCC--CCccHhH
Q 036589           51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE----IIFCNVISFYGRARLLEHALQVFDEMPSFN--VQRTVKS  124 (176)
Q Consensus        51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~  124 (176)
                      ...|...+....+.|++++|...|+.+.+.+   |+.    ..+-.+..+|...|++++|...|+.+.+.-  .......
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y---P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA  219 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY---PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA  219 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence            4456666666677899999999999999873   332    355668899999999999999999998422  1122344


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589          125 LNTLLNALLTCGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus       125 ~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~  154 (176)
                      +-.+...+...|+.++|.++|+...+....
T Consensus       220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~  249 (263)
T PRK10803        220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPG  249 (263)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            445566778899999999999999876443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.11  E-value=0.012  Score=43.26  Aligned_cols=101  Identities=18%  Similarity=0.163  Sum_probs=80.9

Q ss_pred             HHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcH
Q 036589           59 TKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKL  138 (176)
Q Consensus        59 ~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~  138 (176)
                      +-..+.+++.+|...|.+..+-  ..-|.+-|..-..+|++.|.++.|++-.+...+.. ..-..+|..|-.+|...|++
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~  165 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKY  165 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcH
Confidence            3455789999999999999966  24567778889999999999999999998887543 33567899999999999999


Q ss_pred             HHHHHHHHHHHhccccccchHHHHHHH
Q 036589          139 DRMKELFISFNLKAIAVLDGLCSNLKI  165 (176)
Q Consensus       139 ~~a~~l~~~m~~~~~~~p~~~t~~~li  165 (176)
                      ++|++-|++..+.  . |+-.+|-.=+
T Consensus       166 ~~A~~aykKaLel--d-P~Ne~~K~nL  189 (304)
T KOG0553|consen  166 EEAIEAYKKALEL--D-PDNESYKSNL  189 (304)
T ss_pred             HHHHHHHHhhhcc--C-CCcHHHHHHH
Confidence            9999999987654  4 6666664433

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.11  E-value=0.003  Score=36.89  Aligned_cols=64  Identities=16%  Similarity=0.212  Sum_probs=51.2

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhccc----CCC-Cc-cHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPS----FNV-QR-TVKSLNTLLNALLTCGKLDRMKELFISFNL  150 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~-~p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~  150 (176)
                      ..+++.+-..|.+.|++++|+..|++..+    .|- .| ...+++.+-..+...|++++|++.+++..+
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            45788999999999999999999998763    221 12 267788999999999999999999988654

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.09  E-value=0.022  Score=44.47  Aligned_cols=67  Identities=6%  Similarity=-0.182  Sum_probs=58.1

Q ss_pred             CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch----HHHHHHHHHHHhccCHHHHHHHHHhcccC
Q 036589           47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE----IIFCNVISFYGRARLLEHALQVFDEMPSF  116 (176)
Q Consensus        47 ~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~  116 (176)
                      -+.+...|+.+..+|.+.|++++|...|++..+.   .|+.    .+|..+..+|...|+.++|++.|++..+.
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL---~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL---NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3457788999999999999999999999998865   4553    46889999999999999999999998864

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.08  E-value=0.0055  Score=46.28  Aligned_cols=127  Identities=12%  Similarity=0.071  Sum_probs=77.9

Q ss_pred             HHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHH-----HHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589           10 FRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDL-----IITKLGRAKMFDEMQQILHQLKHDTRVI   84 (176)
Q Consensus        10 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~-----li~~~~~~g~~~~a~~~~~~m~~~~g~~   84 (176)
                      -.|+-.|.+.+++++|..+.+++            .+..|-.+..-.     +.+-.....+...|++.|+-.-++ +..
T Consensus       289 lNL~iYyL~q~dVqeA~~L~Kdl------------~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~S-a~e  355 (557)
T KOG3785|consen  289 LNLIIYYLNQNDVQEAISLCKDL------------DPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGES-ALE  355 (557)
T ss_pred             hhheeeecccccHHHHHHHHhhc------------CCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccc-ccc
Confidence            34666788999999999999999            333443333222     222222334566677777666555 322


Q ss_pred             Cch--------------------HHHH---------------HHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHH-HH
Q 036589           85 PEE--------------------IIFC---------------NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN-TL  128 (176)
Q Consensus        85 ~~~--------------------~~~~---------------~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~l  128 (176)
                      -|+                    .+|-               .+.++++..|.+.+|+++|-......++ |-.+|- .|
T Consensus       356 cDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~L  434 (557)
T KOG3785|consen  356 CDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSML  434 (557)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHH
Confidence            222                    1111               2567777788888888888777654433 444444 44


Q ss_pred             HHHHHhcCcHHHHHHHHHHHHh
Q 036589          129 LNALLTCGKLDRMKELFISFNL  150 (176)
Q Consensus       129 l~~~~~~g~~~~a~~l~~~m~~  150 (176)
                      .++|.++++...|++++-.+..
T Consensus       435 ArCyi~nkkP~lAW~~~lk~~t  456 (557)
T KOG3785|consen  435 ARCYIRNKKPQLAWDMMLKTNT  456 (557)
T ss_pred             HHHHHhcCCchHHHHHHHhcCC
Confidence            4778888888888887766543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.08  E-value=0.0028  Score=51.57  Aligned_cols=133  Identities=9%  Similarity=-0.016  Sum_probs=67.2

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CC--
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD--TR--   82 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--~g--   82 (176)
                      ..|-.++..|...|+.++|..+..+- .++           +||+.-|..+.+.....--+++|.++.++....  +.  
T Consensus       425 emw~~vi~CY~~lg~~~kaeei~~q~-lek-----------~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~  492 (777)
T KOG1128|consen  425 EMWDPVILCYLLLGQHGKAEEINRQE-LEK-----------DPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLA  492 (777)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHH-hcC-----------CCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhc
Confidence            34566677777777777776666655 221           345666665555444433344444444332221  00  


Q ss_pred             ---------------------C-CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHH
Q 036589           83 ---------------------V-IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDR  140 (176)
Q Consensus        83 ---------------------~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~  140 (176)
                                           + ..-..+|-..--+..+.++++.|.+.|..-+... +-+...||.+-.+|.+.++-.+
T Consensus       493 ~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~r  571 (777)
T KOG1128|consen  493 LLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKR  571 (777)
T ss_pred             cccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHH
Confidence                                 0 0011223233334444555666666665554321 2244556666666666666666


Q ss_pred             HHHHHHHHHhcc
Q 036589          141 MKELFISFNLKA  152 (176)
Q Consensus       141 a~~l~~~m~~~~  152 (176)
                      |...+.+..+.+
T Consensus       572 a~~~l~EAlKcn  583 (777)
T KOG1128|consen  572 AFRKLKEALKCN  583 (777)
T ss_pred             HHHHHHHHhhcC
Confidence            666666655544

>PLN02789 farnesyltranstransferase

Probab=97.02  E-value=0.035  Score=41.90  Aligned_cols=148  Identities=8%  Similarity=-0.113  Sum_probs=100.9

Q ss_pred             CCHHHHHHHHHhcc-ChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCCh--HHHHHHHHHHhhcCCC
Q 036589            7 TSPFRLASLLHLQK-HPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMF--DEMQQILHQLKHDTRV   83 (176)
Q Consensus         7 ~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~--~~a~~~~~~m~~~~g~   83 (176)
                      ..|+..-..+...| ++++++..++.+...           .+-+..+|+.--..+.+.|+.  +++..+++++.+.  -
T Consensus        72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~~-----------npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--d  138 (320)
T PLN02789         72 TVWHFRRLCLEALDADLEEELDFAEDVAED-----------NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--D  138 (320)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHHHH-----------CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--C
Confidence            35555555666666 678999999887222           122555676555555566653  6778888888865  2


Q ss_pred             CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhc---Cc----HHHHHHHHHHHHhcccccc
Q 036589           84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTC---GK----LDRMKELFISFNLKAIAVL  156 (176)
Q Consensus        84 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~----~~~a~~l~~~m~~~~~~~p  156 (176)
                      .-+...|+....++.+.|+++++++.++++.+.+ ..|...|+.....+.+.   |.    .++..+...+..+..+.  
T Consensus       139 pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~--  215 (320)
T PLN02789        139 AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR--  215 (320)
T ss_pred             cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCC--
Confidence            4578889988889999999999999999998766 34666677665555443   22    24566777677776665  


Q ss_pred             chHHHHHHHHHhhc
Q 036589          157 DGLCSNLKIIMNDS  170 (176)
Q Consensus       157 ~~~t~~~li~~~~~  170 (176)
                      |...|+.+-..+..
T Consensus       216 N~SaW~Yl~~ll~~  229 (320)
T PLN02789        216 NESPWRYLRGLFKD  229 (320)
T ss_pred             CcCHHHHHHHHHhc
Confidence            66777766666655

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.01  E-value=0.034  Score=35.64  Aligned_cols=108  Identities=12%  Similarity=0.003  Sum_probs=73.2

Q ss_pred             HHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCc--HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CCchH
Q 036589           12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYN--LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV-IPEEI   88 (176)
Q Consensus        12 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~-~~~~~   88 (176)
                      +-.++-..|+.++|+.+|++. ...         +....  ...+-.+..++...|++++|..++++......- ..+..
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~A-l~~---------gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~   76 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRA-LAA---------GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAA   76 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHH-HHc---------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHH
Confidence            445677789999999999998 332         22222  345666788889999999999999999876211 11222


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHH
Q 036589           89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL  133 (176)
Q Consensus        89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~  133 (176)
                      ....+.-++...|+.++|++.+-....    ++...|.--|..|.
T Consensus        77 l~~f~Al~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya  117 (120)
T PF12688_consen   77 LRVFLALALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA  117 (120)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            223344577889999999998876663    44445555555544

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.97  E-value=0.055  Score=37.47  Aligned_cols=124  Identities=11%  Similarity=0.014  Sum_probs=96.6

Q ss_pred             CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCC-CccHhHH
Q 036589           47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNV-QRTVKSL  125 (176)
Q Consensus        47 ~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~  125 (176)
                      ..|++..--.|..++.+.|+..+|...|++...- -+.-|....-.+.++....+++..|...++++-+..- ..++.+.
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~  163 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH  163 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence            3468888888999999999999999999999876 5778888889999999999999999999998876541 1133344


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccC
Q 036589          126 NTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       126 ~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~  174 (176)
                      -.+-..|...|....|..-|+-....... |...+|-  -..+.++||.
T Consensus       164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y--~e~La~qgr~  209 (251)
T COG4700         164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYY--AEMLAKQGRL  209 (251)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHH--HHHHHHhcch
Confidence            55668889999999999999998877655 5555543  2334555544

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.94  E-value=0.085  Score=38.18  Aligned_cols=128  Identities=11%  Similarity=0.051  Sum_probs=68.6

Q ss_pred             HHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHH
Q 036589           10 FRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEII   89 (176)
Q Consensus        10 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~   89 (176)
                      -.++-+..-.|+.+.|...++.+ ..+.        +-.+-+.-...  --+--.|++++|+++|+.+.+. . +.|.++
T Consensus        56 EqV~IAAld~~~~~lAq~C~~~L-~~~f--------p~S~RV~~lka--m~lEa~~~~~~A~e~y~~lL~d-d-pt~~v~  122 (289)
T KOG3060|consen   56 EQVFIAALDTGRDDLAQKCINQL-RDRF--------PGSKRVGKLKA--MLLEATGNYKEAIEYYESLLED-D-PTDTVI  122 (289)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHH-HHhC--------CCChhHHHHHH--HHHHHhhchhhHHHHHHHHhcc-C-cchhHH
Confidence            34455555667777777777776 3321        11111111111  1123456677777777777766 2 445555


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589           90 FCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLK  151 (176)
Q Consensus        90 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~  151 (176)
                      +---+...-..|.-.+|++.+.+..+ -+..|...|.-+-..|...|++++|.=.++++.-.
T Consensus       123 ~KRKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~  183 (289)
T KOG3060|consen  123 RKRKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI  183 (289)
T ss_pred             HHHHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence            55444444445554455554444331 12356666666666666666666666666666543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.92  E-value=0.064  Score=43.83  Aligned_cols=147  Identities=12%  Similarity=-0.024  Sum_probs=84.1

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      .|-.-+....+...+++|..+|.+..            ...|+...|..-++.-.-.+..++|.+++++..+.+   |+-
T Consensus       620 iwlaavKle~en~e~eraR~llakar------------~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f---p~f  684 (913)
T KOG0495|consen  620 IWLAAVKLEFENDELERARDLLAKAR------------SISGTERVWMKSANLERYLDNVEEALRLLEEALKSF---PDF  684 (913)
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHh------------ccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC---Cch
Confidence            34445555556666666666666661            223466666666666666666777777766666552   222


Q ss_pred             -HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhH-HHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589           88 -IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS-LNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI  165 (176)
Q Consensus        88 -~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li  165 (176)
                       -.|-.+-+.+-..++++.|...|..=.+  .-|+... |-.|.+.=-+.|.+-+|..+|++-+-.++.  +..-|-..|
T Consensus       685 ~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk--~~~lwle~I  760 (913)
T KOG0495|consen  685 HKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK--NALLWLESI  760 (913)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC--cchhHHHHH
Confidence             3344444555555555555555543221  1244333 334444445667777777777777666665  666676666


Q ss_pred             HHhhcccc
Q 036589          166 IMNDSQVR  173 (176)
Q Consensus       166 ~~~~~~g~  173 (176)
                      ..-.|.|.
T Consensus       761 r~ElR~gn  768 (913)
T KOG0495|consen  761 RMELRAGN  768 (913)
T ss_pred             HHHHHcCC
Confidence            66666654

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=96.91  E-value=0.031  Score=45.37  Aligned_cols=147  Identities=10%  Similarity=0.047  Sum_probs=99.5

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~   86 (176)
                      ..|-.-+..+..+|++......|+.....         -++..-...|...+......+-++.+.++|....+-   .|.
T Consensus       103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALra---------LpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~---~P~  170 (835)
T KOG2047|consen  103 RIWLDYLQFLIKQGLITRTRRTFDRALRA---------LPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV---APE  170 (835)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHh---------CchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc---CHH
Confidence            34555667777788888888888776222         234444556777777777788888888888777654   232


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhcccCC----------------------------------------C--Ccc--H
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPSFN----------------------------------------V--QRT--V  122 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----------------------------------------~--~p~--~  122 (176)
                      .  -+--|..+++.+++++|-+.+...+...                                        +  -+|  .
T Consensus       171 ~--~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g  248 (835)
T KOG2047|consen  171 A--REEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLG  248 (835)
T ss_pred             H--HHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHH
Confidence            2  4556677777777777776665554211                                        0  011  2


Q ss_pred             hHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhc
Q 036589          123 KSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDS  170 (176)
Q Consensus       123 ~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~  170 (176)
                      ..|++|.+-|.+.|++++|.++|++-.+.-   -+..-|+.+.++|+.
T Consensus       249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v---~tvrDFt~ifd~Ya~  293 (835)
T KOG2047|consen  249 FLWCSLADYYIRSGLFEKARDVYEEAIQTV---MTVRDFTQIFDAYAQ  293 (835)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHhh---eehhhHHHHHHHHHH
Confidence            458999999999999999999999876642   356667777777764

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.89  E-value=0.014  Score=42.74  Aligned_cols=100  Identities=9%  Similarity=-0.087  Sum_probs=71.9

Q ss_pred             HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CCch
Q 036589            9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV-IPEE   87 (176)
Q Consensus         9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~-~~~~   87 (176)
                      |..-+..+.+.|++++|...|+.+....        +.-......+..+..+|...|++++|...|+.+.....- ....
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--------P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~  217 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--------PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAA  217 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHC--------cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence            4455555567899999999999983322        221222346667999999999999999999999876321 1123


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhcccC
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPSF  116 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~  116 (176)
                      ..+-.+...+.+.|+.++|...|+++.+.
T Consensus       218 dAl~klg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        218 DAMFKVGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            33444667788999999999999988854

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.86  E-value=0.019  Score=44.75  Aligned_cols=86  Identities=7%  Similarity=-0.189  Sum_probs=67.2

Q ss_pred             chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccH----hHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-cc------
Q 036589           86 EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV----KSLNTLLNALLTCGKLDRMKELFISFNLKA-IA------  154 (176)
Q Consensus        86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~-~~------  154 (176)
                      +...++.+-.+|.+.|++++|+..|++..+..  |+.    .+|..+-.+|.+.|++++|++.+++..+.+ ..      
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~~i~~  151 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFSTILN  151 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHHHHHh
Confidence            55788899999999999999999999987654  664    469999999999999999999999987741 11      


Q ss_pred             ccch------HHHHHHHHHhhcccc
Q 036589          155 VLDG------LCSNLKIIMNDSQVR  173 (176)
Q Consensus       155 ~p~~------~t~~~li~~~~~~g~  173 (176)
                      .|+.      ..|..++....+.|.
T Consensus       152 DpdL~plR~~pef~eLlee~rk~G~  176 (453)
T PLN03098        152 DPDLAPFRASPEFKELQEEARKGGE  176 (453)
T ss_pred             CcchhhhcccHHHHHHHHHHHHhCC
Confidence            0222      256677777776664

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.78  E-value=0.048  Score=42.91  Aligned_cols=137  Identities=10%  Similarity=0.050  Sum_probs=91.2

Q ss_pred             hccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHH
Q 036589           18 LQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFY   97 (176)
Q Consensus        18 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~   97 (176)
                      ..++++.|..+|++. ...          -..+...|-.-+.+=.+.+.+..|..+++..... -...|.. |---+.+=
T Consensus        85 sq~e~~RARSv~ERA-Ldv----------d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdql-WyKY~ymE  151 (677)
T KOG1915|consen   85 SQKEIQRARSVFERA-LDV----------DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQL-WYKYIYME  151 (677)
T ss_pred             hHHHHHHHHHHHHHH-Hhc----------ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHH-HHHHHHHH
Confidence            356788899999997 332          1235566766777777888888888888887765 2333332 33344444


Q ss_pred             HhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccc
Q 036589           98 GRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQV  172 (176)
Q Consensus        98 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g  172 (176)
                      -..|++..|.++|+.-.+-  .|+...|++.|+.=.+-+.++.|..++.+.+-.   ||++.+|--...---+.|
T Consensus       152 E~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~---HP~v~~wikyarFE~k~g  221 (677)
T KOG1915|consen  152 EMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV---HPKVSNWIKYARFEEKHG  221 (677)
T ss_pred             HHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee---cccHHHHHHHHHHHHhcC
Confidence            5567888888888876643  588888888888888888888888888877643   366666655444333333

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.77  E-value=0.06  Score=39.67  Aligned_cols=107  Identities=10%  Similarity=0.015  Sum_probs=83.0

Q ss_pred             CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccC-HHHHHHHHHhcccCCCCccHhHH
Q 036589           47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL-LEHALQVFDEMPSFNVQRTVKSL  125 (176)
Q Consensus        47 ~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~  125 (176)
                      .+-|...|.-|...|...|+++.|..-|....+-.|-.|+...-..=+-.+..-+. -.++.++|+++.... .-|+.+-
T Consensus       152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral  230 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL  230 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence            34488899999999999999999999999998876666665544433333444333 578999999998654 3466777


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589          126 NTLLNALLTCGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus       126 ~~ll~~~~~~g~~~~a~~l~~~m~~~~~~  154 (176)
                      ..|-..+...|++.+|...++.|.+...+
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~  259 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPA  259 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCCC
Confidence            77778999999999999999999886543

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=96.75  E-value=0.14  Score=37.84  Aligned_cols=142  Identities=8%  Similarity=0.151  Sum_probs=104.4

Q ss_pred             ccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHh-c-CChHHHHHHHHHHhhcCCCCCchHHHHHHHHH
Q 036589           19 QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGR-A-KMFDEMQQILHQLKHDTRVIPEEIIFCNVISF   96 (176)
Q Consensus        19 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~-~-g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~   96 (176)
                      ...+.+|+++|+....+         ..+-.|..+-..+++.... . .....-.++.+.+....+-.++..+...+|+.
T Consensus       141 N~~Vv~aL~L~~~~~~~---------~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~  211 (292)
T PF13929_consen  141 NKIVVEALKLYDGLNPD---------ESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEI  211 (292)
T ss_pred             hHHHHHHHHHhhccCcc---------cceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHH
Confidence            44566888888855221         2355678888888888876 2 24555566777777666778888899999999


Q ss_pred             HHhccCHHHHHHHHHhcccC-CCCccHhHHHHHHHHHHhcCcHHHHHHHHHH-----HHhccccccchHHHHHHHHHhhc
Q 036589           97 YGRARLLEHALQVFDEMPSF-NVQRTVKSLNTLLNALLTCGKLDRMKELFIS-----FNLKAIAVLDGLCSNLKIIMNDS  170 (176)
Q Consensus        97 ~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~-----m~~~~~~~p~~~t~~~li~~~~~  170 (176)
                      +++.++|.+-.++++.-... +..-|...|..+|+.....|+..-...+.++     ++..++. .+...-..+-..+.+
T Consensus       212 L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~-v~~~L~~~L~~LF~~  290 (292)
T PF13929_consen  212 LAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVD-VTDELRSQLSELFKK  290 (292)
T ss_pred             HHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCc-CCHHHHHHHHHHHHh
Confidence            99999999999999987744 6677999999999999999999988888766     2345555 555555555444433

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.73  E-value=0.02  Score=38.34  Aligned_cols=92  Identities=13%  Similarity=-0.035  Sum_probs=74.4

Q ss_pred             HHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHH
Q 036589           11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIF   90 (176)
Q Consensus        11 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~   90 (176)
                      .+-..+...|++++|..+|+-+ -.-          -+-+..-|-.|.-++-..|++++|...|.....- . .-|...+
T Consensus        40 ~~A~~ly~~G~l~~A~~~f~~L-~~~----------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L-~-~ddp~~~  106 (157)
T PRK15363         40 RYAMQLMEVKEFAGAARLFQLL-TIY----------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI-K-IDAPQAP  106 (157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHH-HHh----------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C-CCCchHH
Confidence            3455677899999999999987 221          1236667888888899999999999999999877 4 3456777


Q ss_pred             HHHHHHHHhccCHHHHHHHHHhccc
Q 036589           91 CNVISFYGRARLLEHALQVFDEMPS  115 (176)
Q Consensus        91 ~~li~~~~~~g~~~~a~~~~~~m~~  115 (176)
                      -.+-.++.+.|+.+.|.+.|+....
T Consensus       107 ~~ag~c~L~lG~~~~A~~aF~~Ai~  131 (157)
T PRK15363        107 WAAAECYLACDNVCYAIKALKAVVR  131 (157)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            7799999999999999999998774

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.70  E-value=0.11  Score=36.03  Aligned_cols=130  Identities=14%  Similarity=0.050  Sum_probs=96.2

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC--CC
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR--VI   84 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g--~~   84 (176)
                      ----.|-.++.+.|++.+|...|++. ..         ..+..|....-.+.++....+++-.|...++++-+...  -.
T Consensus        90 qnr~rLa~al~elGr~~EA~~hy~qa-ls---------G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~  159 (251)
T COG4700          90 QNRYRLANALAELGRYHEAVPHYQQA-LS---------GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS  159 (251)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHH-hc---------cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC
Confidence            33456788999999999999999998 33         25667888888888999999999999999999887621  23


Q ss_pred             CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHH----HHHHHHHh
Q 036589           85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMK----ELFISFNL  150 (176)
Q Consensus        85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~----~l~~~m~~  150 (176)
                      ||  +.-.+-+.|...|...+|+..|+...+.  -|+...--..-..+.+.|+.+++.    ++++....
T Consensus       160 pd--~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r  225 (251)
T COG4700         160 PD--GHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKR  225 (251)
T ss_pred             CC--chHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence            33  3345678888899999999999988864  366555445555667777655544    55555543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.67  E-value=0.035  Score=41.06  Aligned_cols=118  Identities=8%  Similarity=0.056  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHhc-CChHHHHHHHHHHhhcC---C-CCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCC-----Ccc
Q 036589           52 LHYDLIITKLGRA-KMFDEMQQILHQLKHDT---R-VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNV-----QRT  121 (176)
Q Consensus        52 ~~y~~li~~~~~~-g~~~~a~~~~~~m~~~~---g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----~p~  121 (176)
                      ..+..+...|-.. |+++.|.+.|++.....   + ..--..++..+...+.+.|++++|+++|++......     +.+
T Consensus       115 ~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~  194 (282)
T PF14938_consen  115 KCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS  194 (282)
T ss_dssp             HHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence            3566666777777 88999999888876541   2 111234556788899999999999999998764332     222


Q ss_pred             Hh-HHHHHHHHHHhcCcHHHHHHHHHHHHhcc--ccc-cchHHHHHHHHHhh
Q 036589          122 VK-SLNTLLNALLTCGKLDRMKELFISFNLKA--IAV-LDGLCSNLKIIMND  169 (176)
Q Consensus       122 ~~-~~~~ll~~~~~~g~~~~a~~l~~~m~~~~--~~~-p~~~t~~~li~~~~  169 (176)
                      .. .|-..+-++...|+...|.+.|++..+..  +.. .....-..||.+|-
T Consensus       195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~  246 (282)
T PF14938_consen  195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYE  246 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence            22 22233345666799999999999987543  320 22344455555553

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.65  E-value=0.018  Score=32.95  Aligned_cols=58  Identities=9%  Similarity=0.047  Sum_probs=49.5

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCC
Q 036589           58 ITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFN  117 (176)
Q Consensus        58 i~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  117 (176)
                      -..|.+.++++.|.++++.+... . +.+...+...-.++.+.|++++|.+.|+...+.+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~-~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALEL-D-PDDPELWLQRARCLFQLGRYEEALEDLERALELS   59 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHh-C-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            35678999999999999999987 2 3466777788999999999999999999998654

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=96.63  E-value=0.014  Score=47.66  Aligned_cols=139  Identities=17%  Similarity=0.063  Sum_probs=103.5

Q ss_pred             HHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHH
Q 036589           10 FRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEII   89 (176)
Q Consensus        10 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~   89 (176)
                      ..+...+.+.|-...|+.+|++.                   ..|.-+|.+|+..|+-.+|..+..+-.++   +||...
T Consensus       402 ~~laell~slGitksAl~I~Erl-------------------emw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~l  459 (777)
T KOG1128|consen  402 RLLAELLLSLGITKSALVIFERL-------------------EMWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRL  459 (777)
T ss_pred             HHHHHHHHHcchHHHHHHHHHhH-------------------HHHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchh
Confidence            34677888899999999999887                   35677999999999999999988888764   578888


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHhcc----------------------------cCCCCccHhHHHHHHHHHHhcCcHHHH
Q 036589           90 FCNVISFYGRARLLEHALQVFDEMP----------------------------SFNVQRTVKSLNTLLNALLTCGKLDRM  141 (176)
Q Consensus        90 ~~~li~~~~~~g~~~~a~~~~~~m~----------------------------~~~~~p~~~~~~~ll~~~~~~g~~~~a  141 (176)
                      |..+.+....-.-+++|+++++..-                            +.. +.-..+|-.+-.+..+.+++..|
T Consensus       460 yc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~a  538 (777)
T KOG1128|consen  460 YCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAA  538 (777)
T ss_pred             HHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHH
Confidence            8877666555555566665555322                            111 11235566666677788899999


Q ss_pred             HHHHHHHHhccccccchHHHHHHHHHhhcccc
Q 036589          142 KELFISFNLKAIAVLDGLCSNLKIIMNDSQVR  173 (176)
Q Consensus       142 ~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~  173 (176)
                      .+.|..-....+.  +...||.+-.+|.+.++
T Consensus       539 v~aF~rcvtL~Pd--~~eaWnNls~ayi~~~~  568 (777)
T KOG1128|consen  539 VKAFHRCVTLEPD--NAEAWNNLSTAYIRLKK  568 (777)
T ss_pred             HHHHHHHhhcCCC--chhhhhhhhHHHHHHhh
Confidence            9999998876654  78899999998887664

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.61  E-value=0.085  Score=45.28  Aligned_cols=142  Identities=12%  Similarity=0.064  Sum_probs=97.7

Q ss_pred             CCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 036589            6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP   85 (176)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~   85 (176)
                      +..|+.+..+=.+.|.+.+|++-|-+..                |+..|..+++...+.|.+++..+.+...++. .-+|
T Consensus      1104 p~vWsqlakAQL~~~~v~dAieSyikad----------------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~ 1166 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKAD----------------DPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREP 1166 (1666)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHhcC----------------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCc
Confidence            4578899999999999999998877662                7889999999999999999999999888877 6666


Q ss_pred             chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHH----------------
Q 036589           86 EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN----------------  149 (176)
Q Consensus        86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~----------------  149 (176)
                      ...  +.||-+|++.+++.+.++++.       -||....-.+-+-|...+.++.|.-+|....                
T Consensus      1167 ~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ 1237 (1666)
T KOG0985|consen 1167 YID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQ 1237 (1666)
T ss_pred             cch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            554  578999999999887766542       2444444444444444444444443332211                


Q ss_pred             ----hccccccchHHHHHHHHHhhccccC
Q 036589          150 ----LKAIAVLDGLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       150 ----~~~~~~p~~~t~~~li~~~~~~g~~  174 (176)
                          ...-. .++.||--.=.+|...+.+
T Consensus      1238 ~AVD~aRKA-ns~ktWK~VcfaCvd~~EF 1265 (1666)
T KOG0985|consen 1238 GAVDAARKA-NSTKTWKEVCFACVDKEEF 1265 (1666)
T ss_pred             HHHHHhhhc-cchhHHHHHHHHHhchhhh
Confidence                00111 4566777777777665543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=96.60  E-value=0.016  Score=47.95  Aligned_cols=107  Identities=12%  Similarity=0.093  Sum_probs=78.4

Q ss_pred             HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchH
Q 036589            9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEI   88 (176)
Q Consensus         9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~   88 (176)
                      |--+.+.|...|+++.|.++|.+..                   .++..|..|.++|++++|.++-.+..   |...+..
T Consensus       768 y~~iadhyan~~dfe~ae~lf~e~~-------------------~~~dai~my~k~~kw~da~kla~e~~---~~e~t~~  825 (1636)
T KOG3616|consen  768 YGEIADHYANKGDFEIAEELFTEAD-------------------LFKDAIDMYGKAGKWEDAFKLAEECH---GPEATIS  825 (1636)
T ss_pred             chHHHHHhccchhHHHHHHHHHhcc-------------------hhHHHHHHHhccccHHHHHHHHHHhc---CchhHHH
Confidence            4556788999999999999998871                   24457888999999999999877665   5667778


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHH
Q 036589           89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI  146 (176)
Q Consensus        89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~  146 (176)
                      .|-+-..-+-+.|++.+|+++|-...    .|+.     -|.+|-++|..+..+++..
T Consensus       826 ~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~  874 (1636)
T KOG3616|consen  826 LYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVE  874 (1636)
T ss_pred             HHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHH
Confidence            88887777888888888888776655    2442     2445555555555554443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.56  E-value=0.072  Score=38.88  Aligned_cols=131  Identities=11%  Similarity=-0.008  Sum_probs=94.4

Q ss_pred             HHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHH
Q 036589           12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFC   91 (176)
Q Consensus        12 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~   91 (176)
                      ++..+.-.+.+.-.+.++++. .+.         ..+.++..-..+.+.-.+.|+.+.|...|++..+. .-+.+..+++
T Consensus       183 ~~~~llG~kEy~iS~d~~~~v-i~~---------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~  251 (366)
T KOG2796|consen  183 MANCLLGMKEYVLSVDAYHSV-IKY---------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGK  251 (366)
T ss_pred             HHHHHhcchhhhhhHHHHHHH-HHh---------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-Hhhhhccchh
Confidence            344444456666677777776 332         22346677777888888999999999999988887 5567777776


Q ss_pred             HHHH-----HHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589           92 NVIS-----FYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus        92 ~li~-----~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~  154 (176)
                      .++.     .|.-..++..|...|++..... ..|+...|.-.-++.-.|+...|.+.+..|++..+.
T Consensus       252 ~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~  318 (366)
T KOG2796|consen  252 IMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR  318 (366)
T ss_pred             HHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            6543     3444667888999998888654 446777777666677789999999999999886554

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.52  E-value=0.038  Score=44.07  Aligned_cols=141  Identities=9%  Similarity=0.009  Sum_probs=101.4

Q ss_pred             hhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcc
Q 036589           22 PKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRAR  101 (176)
Q Consensus        22 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g  101 (176)
                      +....++|-++...         .+.++|+.++..|.-.|--.|+|++|...|+......  +-|..+||-|-..++...
T Consensus       410 l~~i~~~fLeaa~~---------~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~  478 (579)
T KOG1125|consen  410 LAHIQELFLEAARQ---------LPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK--PNDYLLWNRLGATLANGN  478 (579)
T ss_pred             HHHHHHHHHHHHHh---------CCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC--CchHHHHHHhhHHhcCCc
Confidence            33455556555222         3435678888888888889999999999999999651  336678899988888889


Q ss_pred             CHHHHHHHHHhcccCCCCcc-HhHHHHHHHHHHhcCcHHHHHHHHHHHH---hc-----cccccchHHHHHHHHHhhccc
Q 036589          102 LLEHALQVFDEMPSFNVQRT-VKSLNTLLNALLTCGKLDRMKELFISFN---LK-----AIAVLDGLCSNLKIIMNDSQV  172 (176)
Q Consensus       102 ~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~l~~~m~---~~-----~~~~p~~~t~~~li~~~~~~g  172 (176)
                      +.++|++.|.+.++..  |+ +.+...|--+|...|.+++|.+.|-+.+   +.     +.++++...|.+|=.++.-.+
T Consensus       479 ~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~  556 (579)
T KOG1125|consen  479 RSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMN  556 (579)
T ss_pred             ccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcC
Confidence            9999999999998764  54 3445556667889999999998886643   22     111145568888776666665


Q ss_pred             cCC
Q 036589          173 RVT  175 (176)
Q Consensus       173 ~~~  175 (176)
                      +.|
T Consensus       557 ~~D  559 (579)
T KOG1125|consen  557 RSD  559 (579)
T ss_pred             Cch
Confidence            544

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.51  E-value=0.15  Score=36.92  Aligned_cols=154  Identities=8%  Similarity=-0.115  Sum_probs=91.6

Q ss_pred             HHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHH
Q 036589           12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFC   91 (176)
Q Consensus        12 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~   91 (176)
                      ....+...|++++|.+.|+.+ ....       +.-+.-....-.+..++-+.+++++|...+++..+..+-.|+ .-|.
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l-~~~y-------P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~-~~~a  108 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEAL-DNRY-------PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN-IDYV  108 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHH-HHhC-------CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc-hHHH
Confidence            345556689999999999998 3331       211111222345678888999999999999999887433333 2333


Q ss_pred             HHHHHHHh--cc---------------C---HHHHHHHHHhcccC----CCCccHhH------------HHHHHHHHHhc
Q 036589           92 NVISFYGR--AR---------------L---LEHALQVFDEMPSF----NVQRTVKS------------LNTLLNALLTC  135 (176)
Q Consensus        92 ~li~~~~~--~g---------------~---~~~a~~~~~~m~~~----~~~p~~~~------------~~~ll~~~~~~  135 (176)
                      ..+.+.+.  .+               +   ..+|++.|+++++.    ...++...            --.+..-|.+.
T Consensus       109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~  188 (243)
T PRK10866        109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKR  188 (243)
T ss_pred             HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            33333321  11               1   34566667666632    11111111            11344557888


Q ss_pred             CcHHHHHHHHHHHHhccc--cccchHHHHHHHHHhhccccCC
Q 036589          136 GKLDRMKELFISFNLKAI--AVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       136 g~~~~a~~l~~~m~~~~~--~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      |.+..|..=|+.+.+.-.  + ......-.|+.+|...|..+
T Consensus       189 ~~y~AA~~r~~~v~~~Yp~t~-~~~eal~~l~~ay~~lg~~~  229 (243)
T PRK10866        189 GAYVAVVNRVEQMLRDYPDTQ-ATRDALPLMENAYRQLQLNA  229 (243)
T ss_pred             CchHHHHHHHHHHHHHCCCCc-hHHHHHHHHHHHHHHcCChH
Confidence            999889988888886432  2 34455567778887777643

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.50  E-value=0.12  Score=33.86  Aligned_cols=132  Identities=11%  Similarity=0.094  Sum_probs=92.6

Q ss_pred             CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589            5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI   84 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~   84 (176)
                      ++.....++..+...+.+.....+++.+...          + ..+...++.++..|++... .+....++.  .     
T Consensus         6 ~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~----------~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~-----   66 (140)
T smart00299        6 DPIDVSEVVELFEKRNLLEELIPYLESALKL----------N-SENPALQTKLIELYAKYDP-QKEIERLDN--K-----   66 (140)
T ss_pred             CcCCHHHHHHHHHhCCcHHHHHHHHHHHHcc----------C-ccchhHHHHHHHHHHHHCH-HHHHHHHHh--c-----
Confidence            4567788999999999999999999998322          1 2477789999999998753 344444442  1     


Q ss_pred             CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhc-CcHHHHHHHHHHHHhccccccchHHHHH
Q 036589           85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTC-GKLDRMKELFISFNLKAIAVLDGLCSNL  163 (176)
Q Consensus        85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~l~~~m~~~~~~~p~~~t~~~  163 (176)
                      .+......+++.|.+.+.++++..++..+..         |...+..+... ++++.|.+.+.+  .     -+...|..
T Consensus        67 ~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~--~-----~~~~lw~~  130 (140)
T smart00299       67 SNHYDIEKVGKLCEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK--Q-----NNPELWAE  130 (140)
T ss_pred             cccCCHHHHHHHHHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh--C-----CCHHHHHH
Confidence            2334445588888889999999999988763         23333344444 888889888876  1     35568888


Q ss_pred             HHHHhhcc
Q 036589          164 KIIMNDSQ  171 (176)
Q Consensus       164 li~~~~~~  171 (176)
                      ++..+...
T Consensus       131 ~~~~~l~~  138 (140)
T smart00299      131 VLKALLDK  138 (140)
T ss_pred             HHHHHHcc
Confidence            88777643

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.48  E-value=0.29  Score=38.76  Aligned_cols=133  Identities=8%  Similarity=-0.007  Sum_probs=103.6

Q ss_pred             CCCHHHHHHH----HHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036589            6 PTSPFRLASL----LHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT   81 (176)
Q Consensus         6 ~~~~~~l~~~----~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~   81 (176)
                      .+||..+--.    -.|+.+++.|.+++-..            -|..|....+-.-|..=.+.+.++.+..+|+...+. 
T Consensus       400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~A------------IG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~-  466 (677)
T KOG1915|consen  400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNA------------IGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF-  466 (677)
T ss_pred             cchHHHHHHHHHHHHHHHcccHHHHHHHHHH------------hccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc-
Confidence            3455554333    34678899999988877            466788888888888888999999999999999977 


Q ss_pred             CCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCC-CCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q 036589           82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFN-VQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA  152 (176)
Q Consensus        82 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~  152 (176)
                      + +-+..+|.-....=-..|+.+.|..+|+-..+.. ..--...|-+.|+-=...|.+++|..|++.+.+..
T Consensus       467 ~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt  537 (677)
T KOG1915|consen  467 S-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT  537 (677)
T ss_pred             C-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence            2 3467788777777778899999999999887532 22245667788887788999999999999998753

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.43  E-value=0.024  Score=42.94  Aligned_cols=93  Identities=10%  Similarity=0.106  Sum_probs=68.9

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHH-HHHHHHHhccCHHHHHHHHHhcccCCCCccHhH-HHHHHHHHHh
Q 036589           57 IITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFC-NVISFYGRARLLEHALQVFDEMPSFNVQRTVKS-LNTLLNALLT  134 (176)
Q Consensus        57 li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~  134 (176)
                      +.++.+..|.+.+|+++|-.+... .+ -|..+|. .|.++|.+++.++-|+.++-++...   .+..+ .-.+.+-|-+
T Consensus       399 ~AQAk~atgny~eaEelf~~is~~-~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk  473 (557)
T KOG3785|consen  399 LAQAKLATGNYVEAEELFIRISGP-EI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYK  473 (557)
T ss_pred             HHHHHHHhcChHHHHHHHhhhcCh-hh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHH
Confidence            456677789999999999888744 23 5667774 5678999999999999999888732   12222 3344577888


Q ss_pred             cCcHHHHHHHHHHHHhcccc
Q 036589          135 CGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus       135 ~g~~~~a~~l~~~m~~~~~~  154 (176)
                      .+.+--|.+-|+.+....+.
T Consensus       474 ~~eFyyaaKAFd~lE~lDP~  493 (557)
T KOG3785|consen  474 ANEFYYAAKAFDELEILDPT  493 (557)
T ss_pred             HHHHHHHHHhhhHHHccCCC
Confidence            99999999999888765443

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.37  E-value=0.049  Score=40.64  Aligned_cols=105  Identities=10%  Similarity=0.146  Sum_probs=79.1

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC--CCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccH
Q 036589           45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR--VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV  122 (176)
Q Consensus        45 ~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  122 (176)
                      .|......+...++..-....+++.+...+-+++.+..  ..|+...+. +++.+ ..-+.++++.++..=.+.|+-||-
T Consensus        58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~-~irll-lky~pq~~i~~l~npIqYGiF~dq  135 (418)
T KOG4570|consen   58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHT-WIRLL-LKYDPQKAIYTLVNPIQYGIFPDQ  135 (418)
T ss_pred             cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHH-HHHHH-HccChHHHHHHHhCcchhccccch
Confidence            34455666666677766778889999998888886621  344443333 23332 334788999999999999999999


Q ss_pred             hHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589          123 KSLNTLLNALLTCGKLDRMKELFISFNLK  151 (176)
Q Consensus       123 ~~~~~ll~~~~~~g~~~~a~~l~~~m~~~  151 (176)
                      .+++.+|+.+.+.+++..|.++.-.|...
T Consensus       136 f~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  136 FTFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            99999999999999999999998877643

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=96.37  E-value=0.11  Score=44.47  Aligned_cols=145  Identities=10%  Similarity=0.008  Sum_probs=78.0

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      ....+..+|-+.|+.++|.++++++ -..          -+-++...|.+...|+.. ++++|.+++.+.....   .+.
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~-L~~----------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~---i~~  182 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERL-VKA----------DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF---IKK  182 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHH-Hhc----------CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH---Hhh
Confidence            3444556666667777777777776 221          133666667777777766 6777766666655440   111


Q ss_pred             HHHHHHHHHHH-----hccCHHHHHHHHHhcc-cCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHH
Q 036589           88 IIFCNVISFYG-----RARLLEHALQVFDEMP-SFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCS  161 (176)
Q Consensus        88 ~~~~~li~~~~-----~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~  161 (176)
                      .-|+.+...+.     .-.+.+.-.++.+.+. +.|...-..++-.+-..|...++++++..+|+...+....  |....
T Consensus       183 kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~--n~~a~  260 (906)
T PRK14720        183 KQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK--NNKAR  260 (906)
T ss_pred             hcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc--chhhH
Confidence            11222211111     1112222233333333 1233334455556667777777788888888887776554  66666


Q ss_pred             HHHHHHhh
Q 036589          162 NLKIIMND  169 (176)
Q Consensus       162 ~~li~~~~  169 (176)
                      .-++.+|.
T Consensus       261 ~~l~~~y~  268 (906)
T PRK14720        261 EELIRFYK  268 (906)
T ss_pred             HHHHHHHH
Confidence            66666665

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.37  E-value=0.1  Score=40.50  Aligned_cols=57  Identities=14%  Similarity=-0.060  Sum_probs=34.8

Q ss_pred             HHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036589           14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH   79 (176)
Q Consensus        14 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~   79 (176)
                      .+.+..++...|.+.|-.++..         .-++-++.....+..++...|+.++|...|++...
T Consensus       204 ~Aq~~~~~hs~a~~t~l~le~~---------~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~  260 (564)
T KOG1174|consen  204 LAQMFNFKHSDASQTFLMLHDN---------TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLC  260 (564)
T ss_pred             HHHHHhcccchhhhHHHHHHhh---------ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhh
Confidence            3444456666666665555222         34455666677777777777777777777776653

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.35  E-value=0.08  Score=38.53  Aligned_cols=101  Identities=12%  Similarity=0.030  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC---CCCchHHHHHHHHHHHhccCHHHHHHHHHhcccC-CCCc-cHhHH
Q 036589           51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTR---VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF-NVQR-TVKSL  125 (176)
Q Consensus        51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p-~~~~~  125 (176)
                      ...|+.-+.. .+.|++..|..-|....+.+.   +.|+.  +-.|.+++...|+++.|..+|..+.+. +-.| -+...
T Consensus       142 ~~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdal  218 (262)
T COG1729         142 TKLYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDAL  218 (262)
T ss_pred             hHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHH
Confidence            4466655554 455668888887777776631   23333  233677788888888888888777632 2122 22445


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589          126 NTLLNALLTCGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus       126 ~~ll~~~~~~g~~~~a~~l~~~m~~~~~~  154 (176)
                      --|-.+..+.|+.++|...|++..+.-+.
T Consensus       219 lKlg~~~~~l~~~d~A~atl~qv~k~YP~  247 (262)
T COG1729         219 LKLGVSLGRLGNTDEACATLQQVIKRYPG  247 (262)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence            55666677788888888888887765443

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.28  E-value=0.079  Score=39.96  Aligned_cols=84  Identities=11%  Similarity=0.156  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHH
Q 036589           53 HYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL  132 (176)
Q Consensus        53 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~  132 (176)
                      +.+..|.-+...|+...|.++-++.+     .|+..-|...+.+|+..++|++-.++-.+      +-++.-|-.++..|
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~  247 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC  247 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence            45555777777888888866655443     37888899999999999999988876543      23457799999999


Q ss_pred             HhcCcHHHHHHHHHH
Q 036589          133 LTCGKLDRMKELFIS  147 (176)
Q Consensus       133 ~~~g~~~~a~~l~~~  147 (176)
                      .+.|+..+|..++..
T Consensus       248 ~~~~~~~eA~~yI~k  262 (319)
T PF04840_consen  248 LKYGNKKEASKYIPK  262 (319)
T ss_pred             HHCCCHHHHHHHHHh
Confidence            999999999888877

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.27  E-value=0.29  Score=40.27  Aligned_cols=153  Identities=12%  Similarity=0.036  Sum_probs=112.4

Q ss_pred             CCCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036589            2 NKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT   81 (176)
Q Consensus         2 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~   81 (176)
                      ..|+...|..-+....-.++.++|++++++..           +.++.-...|-.+.+.+-..++++.|..-|..=.+. 
T Consensus       647 ~sgTeRv~mKs~~~er~ld~~eeA~rllEe~l-----------k~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-  714 (913)
T KOG0495|consen  647 ISGTERVWMKSANLERYLDNVEEALRLLEEAL-----------KSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-  714 (913)
T ss_pred             cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHH-----------HhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-
Confidence            35777788888888888999999999998872           234444456777778888889999998887765543 


Q ss_pred             CCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHH
Q 036589           82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCS  161 (176)
Q Consensus        82 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~  161 (176)
                       +.-....|-.|.+.=-+.|.+-.|..+|+.-.-.+ +-|...|-..|..=.+.|+.+.|..+..+..+....  +..-|
T Consensus       715 -cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~--sg~LW  790 (913)
T KOG0495|consen  715 -CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPS--SGLLW  790 (913)
T ss_pred             -CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--cchhH
Confidence             23334456666666677889999999999877444 447888999999999999999999998887765443  55555


Q ss_pred             HHHHHHhhc
Q 036589          162 NLKIIMNDS  170 (176)
Q Consensus       162 ~~li~~~~~  170 (176)
                      ..-|....+
T Consensus       791 aEaI~le~~  799 (913)
T KOG0495|consen  791 AEAIWLEPR  799 (913)
T ss_pred             HHHHHhccC
Confidence            555544433

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=96.18  E-value=0.15  Score=42.25  Aligned_cols=130  Identities=11%  Similarity=-0.034  Sum_probs=101.3

Q ss_pred             HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc-h
Q 036589            9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE-E   87 (176)
Q Consensus         9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~-~   87 (176)
                      |......+.+.++.++|...+.+. ..          ..+-....|......+-..|.+++|.+.|.....-   .|+ +
T Consensus       653 wllaa~~~~~~~~~~~a~~CL~Ea-~~----------~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l---dP~hv  718 (799)
T KOG4162|consen  653 WLLAADLFLLSGNDDEARSCLLEA-SK----------IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL---DPDHV  718 (799)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHH-Hh----------cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc---CCCCc
Confidence            445567788888889998777776 22          23446667777777888889999999988887744   444 4


Q ss_pred             HHHHHHHHHHHhccCHHHHHH--HHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q 036589           88 IIFCNVISFYGRARLLEHALQ--VFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI  153 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~--~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~  153 (176)
                      .+..++..++.+.|+..-|..  ++..+.+.+ +.+...|-.+-..+-+.|+.++|.+.|....+...
T Consensus       719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~  785 (799)
T KOG4162|consen  719 PSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE  785 (799)
T ss_pred             HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence            567889999999998777777  999998776 55788899999999999999999999998776443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.16  E-value=0.17  Score=40.80  Aligned_cols=124  Identities=9%  Similarity=0.031  Sum_probs=83.2

Q ss_pred             HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHH
Q 036589           13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCN   92 (176)
Q Consensus        13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~   92 (176)
                      ++-+.+.+++++|.+.-+.+ ..          ..+-+...+..-+-++.+.+.|++|..+.+.-..   ...+.+-+--
T Consensus        19 ln~~~~~~e~e~a~k~~~Ki-l~----------~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~---~~~~~~~~fE   84 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKI-LS----------IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA---LLVINSFFFE   84 (652)
T ss_pred             HHHhccchHHHHHHHHHHHH-Hh----------cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch---hhhcchhhHH
Confidence            45566788999999998888 22          2344666777778888899999999854433221   1222222211


Q ss_pred             HHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589           93 VISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus        93 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~  154 (176)
                      -..+..+.+..++|+..++...+    -+..+...-...+-+.|++++|.++|+.+.+.+.+
T Consensus        85 KAYc~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d  142 (652)
T KOG2376|consen   85 KAYCEYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD  142 (652)
T ss_pred             HHHHHHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc
Confidence            23344567889999999984442    23335555567778999999999999999876654

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.15  E-value=0.088  Score=39.17  Aligned_cols=131  Identities=14%  Similarity=0.044  Sum_probs=82.3

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      .+.+++..+.+..++.+|++++..- .++.          +.+....+.+..+|-...++..|-..|+++...   .|..
T Consensus        12 eftaviy~lI~d~ry~DaI~~l~s~-~Er~----------p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~   77 (459)
T KOG4340|consen   12 EFTAVVYRLIRDARYADAIQLLGSE-LERS----------PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPEL   77 (459)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHH-HhcC----------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHH
Confidence            4788888899999999999998876 3331          225667777777777777777777766666543   1111


Q ss_pred             HH---------HHH------------------------------------------HH----------------HHHHhc
Q 036589           88 II---------FCN------------------------------------------VI----------------SFYGRA  100 (176)
Q Consensus        88 ~~---------~~~------------------------------------------li----------------~~~~~~  100 (176)
                      .-         |++                                          |+                -...+.
T Consensus        78 ~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyke  157 (459)
T KOG4340|consen   78 EQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKE  157 (459)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeecc
Confidence            00         000                                          00                111345


Q ss_pred             cCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q 036589          101 RLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI  153 (176)
Q Consensus       101 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~  153 (176)
                      |+++.|.+-|+...+.+---....||.-+..| +.|+++.|+++..+.++.|+
T Consensus       158 gqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~  209 (459)
T KOG4340|consen  158 GQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGI  209 (459)
T ss_pred             ccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhh
Confidence            67777777777766533223345677766655 44777888888877776665

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.11  E-value=0.17  Score=43.65  Aligned_cols=154  Identities=11%  Similarity=0.111  Sum_probs=100.3

Q ss_pred             CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHH---------------------------
Q 036589            5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLI---------------------------   57 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l---------------------------   57 (176)
                      +|...+..+.++...+-+.+-+++++.+..+.        ..+.-+...-|.+                           
T Consensus       983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~--------S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~i 1054 (1666)
T KOG0985|consen  983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDN--------SVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDI 1054 (1666)
T ss_pred             ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCC--------cccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhH
Confidence            45556677888888888888888888764332        1222222222222                           


Q ss_pred             HHHHHhcCChHHHHHHHHHHhhcC--------------------CCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCC
Q 036589           58 ITKLGRAKMFDEMQQILHQLKHDT--------------------RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFN  117 (176)
Q Consensus        58 i~~~~~~g~~~~a~~~~~~m~~~~--------------------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  117 (176)
                      ...+..++-+++|.++|+..--..                    .-.-....|+.+..+-.+.|...+|++-|-+..   
T Consensus      1055 a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikad--- 1131 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKAD--- 1131 (1666)
T ss_pred             HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcC---
Confidence            223334566777777777643320                    000122567777777777788888877765544   


Q ss_pred             CCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589          118 VQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       118 ~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                         |+..|.-+++...+.|++++-.+.+.-.++..-. |...  +.||-+|++.+|+.
T Consensus      1132 ---Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id--~eLi~AyAkt~rl~ 1183 (1666)
T KOG0985|consen 1132 ---DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYID--SELIFAYAKTNRLT 1183 (1666)
T ss_pred             ---CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccch--HHHHHHHHHhchHH
Confidence               7778999999999999999999888766655444 5544  57889999988864

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=96.06  E-value=0.59  Score=37.59  Aligned_cols=132  Identities=11%  Similarity=0.060  Sum_probs=104.9

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~   86 (176)
                      .+|-..|+.-.|..-+..|..+|.+. .+.        .-....+++++++|..+|. ++...|.++|+-=.+..|  -+
T Consensus       367 Lv~~~~mn~irR~eGlkaaR~iF~ka-R~~--------~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~--d~  434 (656)
T KOG1914|consen  367 LVYCQYMNFIRRAEGLKAARKIFKKA-RED--------KRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFG--DS  434 (656)
T ss_pred             eehhHHHHHHHHhhhHHHHHHHHHHH-hhc--------cCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcC--CC
Confidence            46778899999999999999999999 442        2223589999999998875 678999999998666532  22


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCcc--HhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRT--VKSLNTLLNALLTCGKLDRMKELFISFNL  150 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~l~~~m~~  150 (176)
                      ..--..-+..+...++=..+..+|+.....+..|+  ...|..+|.-=..-|++..+.++-+++..
T Consensus       435 p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~  500 (656)
T KOG1914|consen  435 PEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT  500 (656)
T ss_pred             hHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            23335678888889999999999999997765554  47799999999999999999999887754

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=96.02  E-value=0.11  Score=38.27  Aligned_cols=77  Identities=8%  Similarity=0.050  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh-----ccccccchHHHHH
Q 036589           89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL-----KAIAVLDGLCSNL  163 (176)
Q Consensus        89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~-----~~~~~p~~~t~~~  163 (176)
                      ++..++..+...|+++.+.+.++++.... +-+...|-.+|.+|.+.|+...|++.|+.+.+     .|+. |...+...
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~-P~~~~~~~  232 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGID-PAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCC-ccHHHHHH
Confidence            33446788888999999999999988554 55888999999999999999999999998864     6999 99988887


Q ss_pred             HHHH
Q 036589          164 KIIM  167 (176)
Q Consensus       164 li~~  167 (176)
                      ....
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            7766

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.01  E-value=0.25  Score=34.64  Aligned_cols=150  Identities=9%  Similarity=-0.082  Sum_probs=90.5

Q ss_pred             HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHH
Q 036589           13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCN   92 (176)
Q Consensus        13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~   92 (176)
                      -..+...|++.+|.+.|+.+ ....       ++-+-.....-.++.++-+.|+++.|...+++..+..+-.|. .-+..
T Consensus        12 a~~~~~~g~y~~Ai~~f~~l-~~~~-------P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~-~~~A~   82 (203)
T PF13525_consen   12 ALEALQQGDYEEAIKLFEKL-IDRY-------PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK-ADYAL   82 (203)
T ss_dssp             HHHHHHCT-HHHHHHHHHHH-HHH--------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT-HHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHH-HHHC-------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-hhhHH
Confidence            45567799999999999998 3321       222334445566889999999999999999998887433332 22222


Q ss_pred             HHHHHH-------------hccCHHHHHHHHHhcccCCCCccHhH------------------HHHHHHHHHhcCcHHHH
Q 036589           93 VISFYG-------------RARLLEHALQVFDEMPSFNVQRTVKS------------------LNTLLNALLTCGKLDRM  141 (176)
Q Consensus        93 li~~~~-------------~~g~~~~a~~~~~~m~~~~~~p~~~~------------------~~~ll~~~~~~g~~~~a  141 (176)
                      .+.+.+             ..+...+|...|+.+.+.-  |++.-                  --.+..-|.+.|.+..|
T Consensus        83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y--P~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA  160 (203)
T PF13525_consen   83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY--PNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAA  160 (203)
T ss_dssp             HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHH
T ss_pred             HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC--cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence            222222             1223467788888776421  33211                  11345678899999999


Q ss_pred             HHHHHHHHhccccc-cchHHHHHHHHHhhcccc
Q 036589          142 KELFISFNLKAIAV-LDGLCSNLKIIMNDSQVR  173 (176)
Q Consensus       142 ~~l~~~m~~~~~~~-p~~~t~~~li~~~~~~g~  173 (176)
                      ..-++.+.+.-..- ......-.|+.+|.+.|.
T Consensus       161 ~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~  193 (203)
T PF13525_consen  161 IIRFQYVIENYPDTPAAEEALARLAEAYYKLGL  193 (203)
T ss_dssp             HHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCC
Confidence            99999988753320 123345667777776664

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.00  E-value=0.15  Score=37.56  Aligned_cols=113  Identities=10%  Similarity=-0.083  Sum_probs=81.6

Q ss_pred             CCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHH---HhcCChHHHHHHHHHHhh
Q 036589            3 KAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKL---GRAKMFDEMQQILHQLKH   79 (176)
Q Consensus         3 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~---~~~g~~~~a~~~~~~m~~   79 (176)
                      .-|...|-.|-.+|.+.|+.+.|..-|....+-         .|-  ++..+..+..++   .......++..+|+++.+
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL---------~g~--n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~  221 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL---------AGD--NPEILLGLAEALYYQAGQQMTAKARALLRQALA  221 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh---------CCC--CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence            446778999999999999999999999997222         233  444444444433   344456889999999997


Q ss_pred             cCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHH
Q 036589           80 DTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLN  130 (176)
Q Consensus        80 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~  130 (176)
                      ..  .-|.....-|-..+...|++.+|...|+.|.+..  |....+..+|.
T Consensus       222 ~D--~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie  268 (287)
T COG4235         222 LD--PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE  268 (287)
T ss_pred             cC--CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence            62  3455566667788999999999999999999764  44444555543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.99  E-value=0.26  Score=39.01  Aligned_cols=104  Identities=13%  Similarity=0.118  Sum_probs=64.9

Q ss_pred             HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHH
Q 036589           13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCN   92 (176)
Q Consensus        13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~   92 (176)
                      .+.-.+.|+++.|.++-++.                .+...|..|.....+.|+++-|++.|++...-          ..
T Consensus       325 FeLAl~lg~L~~A~~~a~~~----------------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~----------~~  378 (443)
T PF04053_consen  325 FELALQLGNLDIALEIAKEL----------------DDPEKWKQLGDEALRQGNIELAEECYQKAKDF----------SG  378 (443)
T ss_dssp             HHHHHHCT-HHHHHHHCCCC----------------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-H----------HH
T ss_pred             hHHHHhcCCHHHHHHHHHhc----------------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCc----------cc
Confidence            34444555555555555444                15667777777777778888877777776643          55


Q ss_pred             HHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 036589           93 VISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF  148 (176)
Q Consensus        93 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m  148 (176)
                      |+-.|.-.|+.+.-.++-+.....|      -+|.-..++...|+++++.+++.+-
T Consensus       379 L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  379 LLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             cHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            6666777777766666665555333      2666667777778888888777653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK15331 chaperone protein SicA; Provisional

Probab=95.92  E-value=0.3  Score=33.04  Aligned_cols=92  Identities=9%  Similarity=-0.001  Sum_probs=70.8

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcC
Q 036589           57 IITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCG  136 (176)
Q Consensus        57 li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g  136 (176)
                      ...-+-..|++++|+.+|.-+.......  ..-|..|-.++...+++++|+..|......+ .-|...+--.-.+|...|
T Consensus        43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n--~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~  119 (165)
T PRK15331         43 HAYEFYNQGRLDEAETFFRFLCIYDFYN--PDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMR  119 (165)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhC
Confidence            3444457899999999999998762223  3345678888888999999999998765444 346666777788999999


Q ss_pred             cHHHHHHHHHHHHhc
Q 036589          137 KLDRMKELFISFNLK  151 (176)
Q Consensus       137 ~~~~a~~l~~~m~~~  151 (176)
                      +.+.|...|....+.
T Consensus       120 ~~~~A~~~f~~a~~~  134 (165)
T PRK15331        120 KAAKARQCFELVNER  134 (165)
T ss_pred             CHHHHHHHHHHHHhC
Confidence            999999999888764

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.83  E-value=0.64  Score=37.12  Aligned_cols=147  Identities=15%  Similarity=0.169  Sum_probs=102.4

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcH-----HHHHHHHHHHHh----cCChHHHHHHHHHHh
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNL-----LHYDLIITKLGR----AKMFDEMQQILHQLK   78 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~y~~li~~~~~----~g~~~~a~~~~~~m~   78 (176)
                      ....++..++=.||-+.+++++.+. .+.        .++.-..     -.|+.++..++.    ....+.|.++++.+.
T Consensus       190 ~~~kll~~vGF~gdR~~GL~~L~~~-~~~--------~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~  260 (468)
T PF10300_consen  190 KVLKLLSFVGFSGDRELGLRLLWEA-SKS--------ENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEML  260 (468)
T ss_pred             HHHHHHhhcCcCCcHHHHHHHHHHH-hcc--------CCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHH
Confidence            3556788888899999999999887 333        3444322     246666655554    346788999999999


Q ss_pred             hcCCCCCchHHHHHH-HHHHHhccCHHHHHHHHHhcccCC---CCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589           79 HDTRVIPEEIIFCNV-ISFYGRARLLEHALQVFDEMPSFN---VQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus        79 ~~~g~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~  154 (176)
                      +.+   |+...|... -+.+...|++++|++.|+......   -+....++.-+.-.+.-.+++++|.+.|..+.+..- 
T Consensus       261 ~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-  336 (468)
T PF10300_consen  261 KRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-  336 (468)
T ss_pred             HhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-
Confidence            873   777777543 356677899999999999755311   123455666777778889999999999999987422 


Q ss_pred             ccchHHHHHHHHHh
Q 036589          155 VLDGLCSNLKIIMN  168 (176)
Q Consensus       155 ~p~~~t~~~li~~~  168 (176)
                       .+..+|.-+.-+|
T Consensus       337 -WSka~Y~Y~~a~c  349 (468)
T PF10300_consen  337 -WSKAFYAYLAAAC  349 (468)
T ss_pred             -cHHHHHHHHHHHH
Confidence             3455555544443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.83  E-value=0.048  Score=28.04  Aligned_cols=38  Identities=16%  Similarity=-0.001  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHH
Q 036589          124 SLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNL  163 (176)
Q Consensus       124 ~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~  163 (176)
                      .+..+-..|...|++++|.++|++..+....  |...|..
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~--~~~a~~~   40 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPD--DPEAWRA   40 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--CHHHHHH
Confidence            3555666666777777777777776665544  4444433

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.73  E-value=0.18  Score=37.21  Aligned_cols=80  Identities=10%  Similarity=0.050  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcc-----cCCCCccHhHHHH
Q 036589           53 HYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP-----SFNVQRTVKSLNT  127 (176)
Q Consensus        53 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~~~~  127 (176)
                      ++..++..+...|+++.+...++++...  -.-+...|..+|.+|.+.|+...|+..|+.+.     +.|+.|...+...
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            3455566666779999999999999977  45688999999999999999999999998775     4889999998888


Q ss_pred             HHHHHHh
Q 036589          128 LLNALLT  134 (176)
Q Consensus       128 ll~~~~~  134 (176)
                      +.....+
T Consensus       233 y~~~~~~  239 (280)
T COG3629         233 YEEILRQ  239 (280)
T ss_pred             HHHHhcc
Confidence            8877443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=95.71  E-value=0.7  Score=37.37  Aligned_cols=123  Identities=10%  Similarity=-0.028  Sum_probs=84.3

Q ss_pred             CCCcHHHHHHHHHHHHhcC-----ChHHHHHHHHHHhhcCCCCCch-HHHHHHHHHHHhc--------cCHHHHHHHHHh
Q 036589           47 FRYNLLHYDLIITKLGRAK-----MFDEMQQILHQLKHDTRVIPEE-IIFCNVISFYGRA--------RLLEHALQVFDE  112 (176)
Q Consensus        47 ~~~~~~~y~~li~~~~~~g-----~~~~a~~~~~~m~~~~g~~~~~-~~~~~li~~~~~~--------g~~~~a~~~~~~  112 (176)
                      .+.+...|...+.+.....     ....|..+|++..+.   .|+- ..|..+..++...        +++..+.+..+.
T Consensus       333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~  409 (517)
T PRK10153        333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN  409 (517)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            3458899999998876533     367899999999976   4543 3334333333221        223455555554


Q ss_pred             cccC-CCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589          113 MPSF-NVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       113 m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      .... ....+...|.++--.....|++++|.+.|++..+..   |+...|..+-..|...|+.+
T Consensus       410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~---ps~~a~~~lG~~~~~~G~~~  470 (517)
T PRK10153        410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE---MSWLNYVLLGKVYELKGDNR  470 (517)
T ss_pred             hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHcCCHH
Confidence            3332 233456778877777777899999999999988764   57789999999999998864

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=95.69  E-value=0.028  Score=41.54  Aligned_cols=137  Identities=11%  Similarity=0.056  Sum_probs=84.9

Q ss_pred             HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC---C-CC
Q 036589            9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT---R-VI   84 (176)
Q Consensus         9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~---g-~~   84 (176)
                      |..--..|...+++++|.+.|.....-..     .......-...|.....+|.+. ++++|...+++.....   | +.
T Consensus        38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~-----~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~  111 (282)
T PF14938_consen   38 YEKAANCFKLAKDWEKAAEAYEKAADCYE-----KLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFS  111 (282)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHHHH-----HTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HH
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHH
Confidence            44455667777888888777776511000     0011112233566666666555 8888888888766531   2 22


Q ss_pred             CchHHHHHHHHHHHhc-cCHHHHHHHHHhccc----CCCCc--cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q 036589           85 PEEIIFCNVISFYGRA-RLLEHALQVFDEMPS----FNVQR--TVKSLNTLLNALLTCGKLDRMKELFISFNLKA  152 (176)
Q Consensus        85 ~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~----~~~~p--~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~  152 (176)
                      --...+..+-..|... |++++|++.|++..+    .+ .+  -..++.-+...+.+.|++++|.++|++.....
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~  185 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKC  185 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence            2234666778888888 899999999987653    33 22  24567788889999999999999999987643

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.59  E-value=0.27  Score=33.79  Aligned_cols=98  Identities=12%  Similarity=0.067  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch--HHHHHHHHHHHhccCHHHHHHHHHhccc---CCCCccHhHH
Q 036589           51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE--IIFCNVISFYGRARLLEHALQVFDEMPS---FNVQRTVKSL  125 (176)
Q Consensus        51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~  125 (176)
                      ...+..+...|++.|+.+.|.+.|.++... ...+..  ..+-.+|+.....+++..+.....+...   .|-.++...-
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nr  114 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNR  114 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence            346777888888888888888888887766 333333  3445677777778887777777665543   2211222111


Q ss_pred             HHHHHHH--HhcCcHHHHHHHHHHHH
Q 036589          126 NTLLNAL--LTCGKLDRMKELFISFN  149 (176)
Q Consensus       126 ~~ll~~~--~~~g~~~~a~~l~~~m~  149 (176)
                      -....++  ...+++.+|.++|-+..
T Consensus       115 lk~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  115 LKVYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHHHhchHHHHHHHHHccC
Confidence            1112222  23577888887776653

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.59  E-value=0.068  Score=42.69  Aligned_cols=88  Identities=8%  Similarity=0.057  Sum_probs=70.3

Q ss_pred             ChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHH
Q 036589           66 MFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELF  145 (176)
Q Consensus        66 ~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~  145 (176)
                      .+....++|-++....+..+|.-.+..|--.|--.|++++|+..|+..++.. +-|...||-|--.++...+.++|+.-|
T Consensus       409 ~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY  487 (579)
T KOG1125|consen  409 HLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAY  487 (579)
T ss_pred             HHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHH
Confidence            3455666777766664656777777888888888999999999999988653 347788999999999999999999999


Q ss_pred             HHHHhcccc
Q 036589          146 ISFNLKAIA  154 (176)
Q Consensus       146 ~~m~~~~~~  154 (176)
                      .+.++.-+.
T Consensus       488 ~rALqLqP~  496 (579)
T KOG1125|consen  488 NRALQLQPG  496 (579)
T ss_pred             HHHHhcCCC
Confidence            998876443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.59  E-value=1  Score=36.63  Aligned_cols=152  Identities=13%  Similarity=0.075  Sum_probs=96.8

Q ss_pred             CCCCHHHHHHHHHhcc-ChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHH--------
Q 036589            5 KPTSPFRLASLLHLQK-HPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILH--------   75 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~--------   75 (176)
                      ..+.-+.+..+..... .+.+|.+++... .++        .+.. ...+-=.+++.....|+++.|.+++.        
T Consensus       339 ~~~~~~ll~~~t~~~~~~~~ka~e~L~~~-~~~--------~p~~-s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s  408 (652)
T KOG2376|consen  339 ESLFPILLQEATKVREKKHKKAIELLLQF-ADG--------HPEK-SKVVLLLRAQLKISQGNPEVALEILSLFLESWKS  408 (652)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhhHHHHHHH-hcc--------CCch-hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence            3333344444443333 477888888877 332        1111 24455556777788999999999999        


Q ss_pred             HHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCC--CCccHhHHHH----HHHHHHhcCcHHHHHHHHHHHH
Q 036589           76 QLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFN--VQRTVKSLNT----LLNALLTCGKLDRMKELFISFN  149 (176)
Q Consensus        76 ~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~----ll~~~~~~g~~~~a~~l~~~m~  149 (176)
                      .+.+- +..|..+  ..++..+.+.++-+-|.+++++....-  -.+.....++    ....=.++|.-++|..+++++.
T Consensus       409 s~~~~-~~~P~~V--~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~  485 (652)
T KOG2376|consen  409 SILEA-KHLPGTV--GAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELV  485 (652)
T ss_pred             hhhhh-ccChhHH--HHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHH
Confidence            55544 5555544  556777777777666666666544210  0122233333    3334457899999999999999


Q ss_pred             hccccccchHHHHHHHHHhhcc
Q 036589          150 LKAIAVLDGLCSNLKIIMNDSQ  171 (176)
Q Consensus       150 ~~~~~~p~~~t~~~li~~~~~~  171 (176)
                      +...  +|..+-..++.+|++.
T Consensus       486 k~n~--~d~~~l~~lV~a~~~~  505 (652)
T KOG2376|consen  486 KFNP--NDTDLLVQLVTAYARL  505 (652)
T ss_pred             HhCC--chHHHHHHHHHHHHhc
Confidence            8766  5999999999999864

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.59  E-value=0.36  Score=31.56  Aligned_cols=130  Identities=14%  Similarity=0.146  Sum_probs=81.6

Q ss_pred             HHHHH--HHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC---
Q 036589           11 RLASL--LHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP---   85 (176)
Q Consensus        11 ~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~---   85 (176)
                      .||++  +.-.|.+++..+++.+.....             +..-||.+|--....-+-+-..++++.+-+...+.+   
T Consensus         5 kLmeAK~~ildG~V~qGveii~k~v~Ss-------------ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~N   71 (161)
T PF09205_consen    5 KLMEAKERILDGDVKQGVEIIEKTVNSS-------------NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGN   71 (161)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHS--------------HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHcCcC-------------CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcc
Confidence            34444  334688888888888873222             566677777666666666666666666655432222   


Q ss_pred             -------------chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q 036589           86 -------------EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA  152 (176)
Q Consensus        86 -------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~  152 (176)
                                   +...+..-+..+.+.|.-++-.+++.++.. +-.+++...--+-.+|.+.|+..++.+++++.-+.|
T Consensus        72 lKrVi~C~~~~n~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   72 LKRVIECYAKRNKLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             THHHHHHHHHTT---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHhcchHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence                         122233446666777777777888888764 336888888899999999999999999999999988


Q ss_pred             cc
Q 036589          153 IA  154 (176)
Q Consensus       153 ~~  154 (176)
                      ++
T Consensus       151 ~k  152 (161)
T PF09205_consen  151 LK  152 (161)
T ss_dssp             -H
T ss_pred             hH
Confidence            86

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.59  E-value=0.21  Score=36.93  Aligned_cols=102  Identities=11%  Similarity=0.024  Sum_probs=78.1

Q ss_pred             HHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC-chHHHHHHH
Q 036589           16 LHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP-EEIIFCNVI   94 (176)
Q Consensus        16 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li   94 (176)
                      +.+.+++.+|+..|.+. .+          -.+-|.+-|..=..+|++.|.++.|.+=.+...+.   .| -..+|..|-
T Consensus        91 ~m~~~~Y~eAv~kY~~A-I~----------l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i---Dp~yskay~RLG  156 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEA-IE----------LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI---DPHYSKAYGRLG  156 (304)
T ss_pred             HHHhhhHHHHHHHHHHH-Hh----------cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc---ChHHHHHHHHHH
Confidence            45678999999999997 22          12337777888889999999999998766666643   33 357899999


Q ss_pred             HHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHH
Q 036589           95 SFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL  133 (176)
Q Consensus        95 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~  133 (176)
                      .+|...|++++|++.|++.++.  .|+-.+|-.=|....
T Consensus       157 ~A~~~~gk~~~A~~aykKaLel--dP~Ne~~K~nL~~Ae  193 (304)
T KOG0553|consen  157 LAYLALGKYEEAIEAYKKALEL--DPDNESYKSNLKIAE  193 (304)
T ss_pred             HHHHccCcHHHHHHHHHhhhcc--CCCcHHHHHHHHHHH
Confidence            9999999999999999988754  476666665554443

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.45  E-value=0.34  Score=38.18  Aligned_cols=120  Identities=13%  Similarity=0.163  Sum_probs=88.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC-CCCchHHHHHHHHHHHhccCHHHHHHHHHh-cccCCCCccHhHHHHH
Q 036589           51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTR-VIPEEIIFCNVISFYGRARLLEHALQVFDE-MPSFNVQRTVKSLNTL  128 (176)
Q Consensus        51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-m~~~~~~p~~~~~~~l  128 (176)
                      ..+|...|++..+..-++.|..+|-+.++. | ..+++..+++.|..++ .|+...|..+|+. |...  .-++.--+-.
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~ky  472 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKY  472 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHH
Confidence            456788888888888899999999999999 6 7889999999999875 6788899999985 4433  2344455677


Q ss_pred             HHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccC
Q 036589          129 LNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       129 l~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~  174 (176)
                      +.-+.+.++-+.|..+|+.-++.--.---...|..+|+.-..-|.+
T Consensus       473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~l  518 (660)
T COG5107         473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSL  518 (660)
T ss_pred             HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcch
Confidence            8888899999999999986543211100145677777766555543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.45  E-value=0.37  Score=41.42  Aligned_cols=154  Identities=8%  Similarity=-0.036  Sum_probs=93.1

Q ss_pred             HHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC---C-CCCchH
Q 036589           14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRY-NLLHYDLIITKLGRAKMFDEMQQILHQLKHDT---R-VIPEEI   88 (176)
Q Consensus        14 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~---g-~~~~~~   88 (176)
                      ..+...|++++|...+++......       ....+ .....+.+...+...|++++|...+++.....   | ......
T Consensus       460 ~~~~~~g~~~~A~~~~~~al~~~~-------~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~  532 (903)
T PRK04841        460 QVAINDGDPEEAERLAELALAELP-------LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW  532 (903)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhcCC-------CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence            344578999999999888622110       11011 12345666677788999999999988876431   1 111223


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHhccc----CCCC--c-cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc--ccc-ccch
Q 036589           89 IFCNVISFYGRARLLEHALQVFDEMPS----FNVQ--R-TVKSLNTLLNALLTCGKLDRMKELFISFNLK--AIA-VLDG  158 (176)
Q Consensus        89 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~--p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~--~~~-~p~~  158 (176)
                      ....+...+...|++++|.+.+++..+    .+..  + ....+..+...+...|++++|.+.+.+....  ... ....
T Consensus       533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~  612 (903)
T PRK04841        533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQL  612 (903)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHH
Confidence            455667778889999999998887653    2211  1 2233445556677789999999998887542  111 0123


Q ss_pred             HHHHHHHHHhhccccC
Q 036589          159 LCSNLKIIMNDSQVRV  174 (176)
Q Consensus       159 ~t~~~li~~~~~~g~~  174 (176)
                      ..+..+...+...|+.
T Consensus       613 ~~~~~la~~~~~~G~~  628 (903)
T PRK04841        613 QCLAMLAKISLARGDL  628 (903)
T ss_pred             HHHHHHHHHHHHcCCH
Confidence            3444444555555553

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=95.42  E-value=0.36  Score=40.77  Aligned_cols=115  Identities=17%  Similarity=0.166  Sum_probs=86.3

Q ss_pred             HHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHH--hcCChHHHHHHHHHHhhcCCCCCchHHHHHH
Q 036589           16 LHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG--RAKMFDEMQQILHQLKHDTRVIPEEIIFCNV   93 (176)
Q Consensus        16 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~--~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~l   93 (176)
                      ....+++.+|++....+.+..         +    -..|..++.++.  +.|+.++|..+++..... +.. |..|...+
T Consensus        19 ~ld~~qfkkal~~~~kllkk~---------P----n~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~-~~~-D~~tLq~l   83 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKH---------P----NALYAKVLKALSLFRLGKGDEALKLLEALYGL-KGT-DDLTLQFL   83 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHC---------C----CcHHHHHHHHHHHHHhcCchhHHHHHhhhccC-CCC-chHHHHHH
Confidence            345678888888888863331         2    223555666555  789999999999988877 333 89999999


Q ss_pred             HHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHH----HHHHHHH
Q 036589           94 ISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDR----MKELFIS  147 (176)
Q Consensus        94 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~----a~~l~~~  147 (176)
                      -.+|.+.+..++|..+|+...+.  -|+..-...+..+|.+.+++.+    |.++++.
T Consensus        84 ~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~  139 (932)
T KOG2053|consen   84 QNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN  139 (932)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999988754  3777777788888888888765    4455543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.32  E-value=0.55  Score=40.38  Aligned_cols=136  Identities=15%  Similarity=0.107  Sum_probs=88.3

Q ss_pred             HHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc---CCCC--
Q 036589           10 FRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD---TRVI--   84 (176)
Q Consensus        10 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~---~g~~--   84 (176)
                      +.+-..+...|++++|...+++......     ...........+..+...+...|++++|...+++....   .+..  
T Consensus       495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~-----~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~  569 (903)
T PRK04841        495 SVLGEVHHCKGELARALAMMQQTEQMAR-----QHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQL  569 (903)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHh-----hhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccc
Confidence            4455667789999999998888621100     00011112345566677788899999999988876543   1211  


Q ss_pred             C-chHHHHHHHHHHHhccCHHHHHHHHHhcccC----CCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589           85 P-EEIIFCNVISFYGRARLLEHALQVFDEMPSF----NVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL  150 (176)
Q Consensus        85 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~  150 (176)
                      + ....+..+...+...|++++|...+++....    +.......+..+...+...|++++|.+.+.....
T Consensus       570 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~  640 (903)
T PRK04841        570 PMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLEN  640 (903)
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            1 2334555666777889999999999876532    2111234455566777889999999999888754

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=95.26  E-value=0.7  Score=38.03  Aligned_cols=95  Identities=11%  Similarity=0.115  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHH
Q 036589           51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLN  130 (176)
Q Consensus        51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~  130 (176)
                      +..|-.-+..+.+.|++......|+.......+.-....|...+......|-++.++.+++...+    .++..-+-.|.
T Consensus       102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie  177 (835)
T KOG2047|consen  102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIE  177 (835)
T ss_pred             CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHH
Confidence            34555566777788888889999988887756666677888889999999999999999998883    56677899999


Q ss_pred             HHHhcCcHHHHHHHHHHHH
Q 036589          131 ALLTCGKLDRMKELFISFN  149 (176)
Q Consensus       131 ~~~~~g~~~~a~~l~~~m~  149 (176)
                      -+++.+++++|.+.+...+
T Consensus       178 ~L~~~d~~~eaa~~la~vl  196 (835)
T KOG2047|consen  178 YLAKSDRLDEAAQRLATVL  196 (835)
T ss_pred             HHHhccchHHHHHHHHHhc
Confidence            9999999999987766543

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=95.12  E-value=0.14  Score=38.21  Aligned_cols=130  Identities=13%  Similarity=0.223  Sum_probs=83.6

Q ss_pred             hhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHh--c----CChHHHHHHHHHHhhcCC--CCCchHHHHHH
Q 036589           22 PKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGR--A----KMFDEMQQILHQLKHDTR--VIPEEIIFCNV   93 (176)
Q Consensus        22 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~--~----g~~~~a~~~~~~m~~~~g--~~~~~~~~~~l   93 (176)
                      +++.+.+++.+ .+         .+++-+.++|-+..-....  .    -...+|..+|+.|++.-.  ..++..++..+
T Consensus        78 ~~~~~~~y~~L-~~---------~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~l  147 (297)
T PF13170_consen   78 FKEVLDIYEKL-KE---------AGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAAL  147 (297)
T ss_pred             HHHHHHHHHHH-HH---------hccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHH
Confidence            33456677777 44         4677677766553333322  2    235778999999999833  35677888877


Q ss_pred             HHHHHhccC----HHHHHHHHHhcccCCCCc-cHhHHHHHHHHHHhcCc---HHHHHHHHHHHHhccccccchHHHHHH
Q 036589           94 ISFYGRARL----LEHALQVFDEMPSFNVQR-TVKSLNTLLNALLTCGK---LDRMKELFISFNLKAIAVLDGLCSNLK  164 (176)
Q Consensus        94 i~~~~~~g~----~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~---~~~a~~l~~~m~~~~~~~p~~~t~~~l  164 (176)
                      +..  ...+    .+.++.+|+.+.+.|+.. |...+-+-+-+++....   ..++.++++.+.+.|+. +....|..+
T Consensus       148 LA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~k-ik~~~yp~l  223 (297)
T PF13170_consen  148 LAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVK-IKYMHYPTL  223 (297)
T ss_pred             Hhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCc-cccccccHH
Confidence            665  3333    467788999998878755 34344444444443322   45788999999999888 776666543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.11  E-value=0.57  Score=30.95  Aligned_cols=85  Identities=12%  Similarity=0.061  Sum_probs=60.9

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC-chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHH
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP-EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTL  128 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  128 (176)
                      ....|. -.....+.|++++|.+.|+.+..+....+ .....-.|+.+|.+.+++++|...++...+..-..--.-|-..
T Consensus        10 ~~~ly~-~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen   10 PQELYQ-EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             HHHHHH-HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            344454 44455678999999999999998854322 3345556999999999999999999999876533333556666


Q ss_pred             HHHHHhc
Q 036589          129 LNALLTC  135 (176)
Q Consensus       129 l~~~~~~  135 (176)
                      +.+++.-
T Consensus        89 ~~gL~~~   95 (142)
T PF13512_consen   89 MRGLSYY   95 (142)
T ss_pred             HHHHHHH
Confidence            6665543

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.04  E-value=0.62  Score=36.69  Aligned_cols=145  Identities=12%  Similarity=0.114  Sum_probs=96.2

Q ss_pred             HHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHH
Q 036589           16 LHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYN-LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVI   94 (176)
Q Consensus        16 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li   94 (176)
                      +-+.+++++|..+|.++-.+..      ..++.-. ...-+.+|++|-.. +.+.....+....+..|..+-...|-.|.
T Consensus        16 Lqkq~~~~esEkifskI~~e~~------~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~   88 (549)
T PF07079_consen   16 LQKQKKFQESEKIFSKIYDEKE------SSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALV   88 (549)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhh------cchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            3457899999999988732211      0111111 23345677777654 47888888888887756555555555443


Q ss_pred             HHHHhccCHHHHHHHHHhcccC--CCC------------ccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh----cccccc
Q 036589           95 SFYGRARLLEHALQVFDEMPSF--NVQ------------RTVKSLNTLLNALLTCGKLDRMKELFISFNL----KAIAVL  156 (176)
Q Consensus        95 ~~~~~~g~~~~a~~~~~~m~~~--~~~------------p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~----~~~~~p  156 (176)
                      .  .+.+++.+|.+.|..-.+.  +..            +|...=++.++++...|.+.++..++++|..    .... .
T Consensus        89 ~--Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~-w  165 (549)
T PF07079_consen   89 A--YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECE-W  165 (549)
T ss_pred             H--HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhc-c
Confidence            2  3778899999888766543  222            2334456778999999999999999988864    4455 7


Q ss_pred             chHHHHHHHHHhhc
Q 036589          157 DGLCSNLKIIMNDS  170 (176)
Q Consensus       157 ~~~t~~~li~~~~~  170 (176)
                      +..+||-++-.+.+
T Consensus       166 ~~d~yd~~vlmlsr  179 (549)
T PF07079_consen  166 NSDMYDRAVLMLSR  179 (549)
T ss_pred             cHHHHHHHHHHHhH
Confidence            88899987666654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.03  E-value=0.64  Score=36.71  Aligned_cols=131  Identities=13%  Similarity=0.082  Sum_probs=100.2

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~   86 (176)
                      +.|...|++-.|..-+..|..+|-+..+.         +-..++++.++++|..++. |+...|.++|+-=...   -||
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~---------~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~---f~d  464 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE---------GIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK---FPD  464 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhcc---------CCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh---CCC
Confidence            46778899999999999999999999433         3467899999999987764 6788899999875544   244


Q ss_pred             hHHH-HHHHHHHHhccCHHHHHHHHHhcccCCCCcc--HhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589           87 EIIF-CNVISFYGRARLLEHALQVFDEMPSFNVQRT--VKSLNTLLNALLTCGKLDRMKELFISFNLK  151 (176)
Q Consensus        87 ~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~  151 (176)
                      ...| +--+..+.+.++-..|..+|+.-+.. +.-+  ...|-.+|.-=..-|++..|..+=++|.+.
T Consensus       465 ~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~  531 (660)
T COG5107         465 STLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL  531 (660)
T ss_pred             chHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence            4444 45677778889999999999965521 1122  456888998889999998888888887764

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.98  E-value=0.76  Score=33.79  Aligned_cols=141  Identities=9%  Similarity=-0.074  Sum_probs=94.4

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCC-CCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNP-NANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~   86 (176)
                      -|+.|.+.+.-...+++-+..|+.-.. +..    . ...-+.-..+.+.++.++...|.+.-....++++.+. ..+.+
T Consensus       138 pqesLdRl~~L~~~V~~ii~~~e~~~~~ESs----v-~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~  211 (366)
T KOG2796|consen  138 PQESLDRLHKLKTVVSKILANLEQGLAEESS----I-RLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQE  211 (366)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhccchhhH----H-HHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHh-CCccc
Confidence            356666666555555555555544311 100    0 0000012345566788888899999999999999997 66778


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH-----HHHHhcCcHHHHHHHHHHHHhcccc
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL-----NALLTCGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll-----~~~~~~g~~~~a~~l~~~m~~~~~~  154 (176)
                      ......|.+.--..|+.+.|...|+...+..-+.|..+++.+.     ..|...+++..|...|.+....+..
T Consensus       212 p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~  284 (366)
T KOG2796|consen  212 PQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR  284 (366)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC
Confidence            8888889999999999999999999777544355666666554     3455677888888888887665443

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.97  E-value=0.6  Score=30.44  Aligned_cols=87  Identities=8%  Similarity=0.150  Sum_probs=62.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHH
Q 036589           54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL  133 (176)
Q Consensus        54 y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~  133 (176)
                      ...++..+...+....+..+++.+... +. .+....|.++..|++.. ..+.+..++.      .++......++..|.
T Consensus        10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~-~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~   80 (140)
T smart00299       10 VSEVVELFEKRNLLEELIPYLESALKL-NS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCE   80 (140)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHcc-Cc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHH
Confidence            446888888889999999999999988 53 67889999999999874 4555666663      123344445666666


Q ss_pred             hcCcHHHHHHHHHHHH
Q 036589          134 TCGKLDRMKELFISFN  149 (176)
Q Consensus       134 ~~g~~~~a~~l~~~m~  149 (176)
                      +.+.++++.-++..+.
T Consensus        81 ~~~l~~~~~~l~~k~~   96 (140)
T smart00299       81 KAKLYEEAVELYKKDG   96 (140)
T ss_pred             HcCcHHHHHHHHHhhc
Confidence            6666666666666553

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.96  E-value=0.93  Score=35.02  Aligned_cols=95  Identities=15%  Similarity=0.098  Sum_probs=73.6

Q ss_pred             HHHHhcCChHHHHHHHHHHhhcC----CCC---------CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHH
Q 036589           59 TKLGRAKMFDEMQQILHQLKHDT----RVI---------PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL  125 (176)
Q Consensus        59 ~~~~~~g~~~~a~~~~~~m~~~~----g~~---------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  125 (176)
                      +.+.+.|++..|..-|+......    +..         .-..+++.|.-+|.+.+++.+|++..+..+..+ ++|.-..
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL  294 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL  294 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence            46678899999999888755431    111         233677889999999999999999999888665 5677666


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589          126 NTLLNALLTCGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus       126 ~~ll~~~~~~g~~~~a~~l~~~m~~~~~~  154 (176)
                      --=-.+|...|+++.|...|+.+.+..+.
T Consensus       295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~  323 (397)
T KOG0543|consen  295 YRRGQALLALGEYDLARDDFQKALKLEPS  323 (397)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence            66678888899999999999999876443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.94  E-value=0.061  Score=26.36  Aligned_cols=23  Identities=22%  Similarity=0.273  Sum_probs=11.5

Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHH
Q 036589          125 LNTLLNALLTCGKLDRMKELFIS  147 (176)
Q Consensus       125 ~~~ll~~~~~~g~~~~a~~l~~~  147 (176)
                      |+.|-..|.+.|++++|+++|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            44445555555555555555555

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.94  E-value=0.24  Score=36.94  Aligned_cols=56  Identities=13%  Similarity=0.203  Sum_probs=37.9

Q ss_pred             HhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCC
Q 036589           62 GRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQ  119 (176)
Q Consensus        62 ~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  119 (176)
                      -+.|+++.|.+-|+...+-.|+.|- ..||.-+-.| +.|+.+.|+....++.++|++
T Consensus       155 ykegqyEaAvqkFqaAlqvsGyqpl-lAYniALaHy-~~~qyasALk~iSEIieRG~r  210 (459)
T KOG4340|consen  155 YKEGQYEAAVQKFQAALQVSGYQPL-LAYNLALAHY-SSRQYASALKHISEIIERGIR  210 (459)
T ss_pred             eccccHHHHHHHHHHHHhhcCCCch-hHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhh
Confidence            4677788888888877777566553 4566444444 567778888877777766643

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=94.91  E-value=1.4  Score=34.54  Aligned_cols=126  Identities=12%  Similarity=0.107  Sum_probs=90.5

Q ss_pred             HHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCC-CcHHHHHHHHHHHHhcCChHHHHHHHHH----Hhhc--------
Q 036589           14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFR-YNLLHYDLIITKLGRAKMFDEMQQILHQ----LKHD--------   80 (176)
Q Consensus        14 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~li~~~~~~g~~~~a~~~~~~----m~~~--------   80 (176)
                      +++...+++++|.-.|+.. ..           +. -+...|.-|+.+|.-.|++.+|..+=++    |..+        
T Consensus       342 ~lL~~~~R~~~A~IaFR~A-q~-----------Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g  409 (564)
T KOG1174|consen  342 RLLIALERHTQAVIAFRTA-QM-----------LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFG  409 (564)
T ss_pred             HHHHhccchHHHHHHHHHH-Hh-----------cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhc
Confidence            4667789999999999887 22           23 4788999999999999999887754333    3322        


Q ss_pred             ---------------------CCCCCch-HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcH
Q 036589           81 ---------------------TRVIPEE-IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKL  138 (176)
Q Consensus        81 ---------------------~g~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~  138 (176)
                                           ..+.|+- ...+.+...+...|..++++.+++.-...  .||....+.|-+.+...+.+
T Consensus       410 ~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~  487 (564)
T KOG1174|consen  410 TLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEP  487 (564)
T ss_pred             ceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhH
Confidence                                 0112221 23344667778888888899888876633  48888889999999999999


Q ss_pred             HHHHHHHHHHHhccc
Q 036589          139 DRMKELFISFNLKAI  153 (176)
Q Consensus       139 ~~a~~l~~~m~~~~~  153 (176)
                      .+|.+-|......++
T Consensus       488 Q~am~~y~~ALr~dP  502 (564)
T KOG1174|consen  488 QKAMEYYYKALRQDP  502 (564)
T ss_pred             HHHHHHHHHHHhcCc
Confidence            988888877655433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.75  E-value=0.071  Score=26.11  Aligned_cols=26  Identities=15%  Similarity=0.270  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHhcc
Q 036589           89 IFCNVISFYGRARLLEHALQVFDEMP  114 (176)
Q Consensus        89 ~~~~li~~~~~~g~~~~a~~~~~~m~  114 (176)
                      +|+.|-..|.+.|++++|+++|++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            47889999999999999999999854

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.64  E-value=1.8  Score=34.65  Aligned_cols=86  Identities=8%  Similarity=0.042  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCC-CccHhHHHHHH
Q 036589           51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNV-QRTVKSLNTLL  129 (176)
Q Consensus        51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll  129 (176)
                      ...-..+-.++.+.|+.++|.+.+.+|.+.....-+......|+.++...+.+.++..++.+-.+... +.-..+|+..+
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL  338 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL  338 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence            34445567777899999999999999987633333556777899999999999999999998764332 22345677666


Q ss_pred             HHHHhcC
Q 036589          130 NALLTCG  136 (176)
Q Consensus       130 ~~~~~~g  136 (176)
                      --+...+
T Consensus       339 LkaRav~  345 (539)
T PF04184_consen  339 LKARAVG  345 (539)
T ss_pred             HHHHhhc
Confidence            4444333

The molecular function of this protein is uncertain.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=94.64  E-value=0.45  Score=40.90  Aligned_cols=131  Identities=12%  Similarity=0.070  Sum_probs=69.4

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      .|..|=..|+...+.-.|.+.|... .+-+       +   -+...+......|++..+++.|..+.-...+......-.
T Consensus       494 af~~LG~iYrd~~Dm~RA~kCf~KA-FeLD-------a---tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k  562 (1238)
T KOG1127|consen  494 AFAFLGQIYRDSDDMKRAKKCFDKA-FELD-------A---TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACK  562 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hcCC-------c---hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHH
Confidence            3555666666666777788888776 3321       2   256667777788888888888777633332221000001


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL  150 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~  150 (176)
                      .-|-.+--.|.+.++..+|+.-|+...+.. +-|..+|..+..+|...|.+.-|.++|.+...
T Consensus       563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~  624 (1238)
T KOG1127|consen  563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL  624 (1238)
T ss_pred             hhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence            111112223344455555555555544322 22445555566666666666666666655433

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=94.64  E-value=0.76  Score=36.69  Aligned_cols=118  Identities=13%  Similarity=0.010  Sum_probs=80.3

Q ss_pred             ccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHH-HHHHHhcCChHHHHHHHHHHhhcC--CCCCchHHHHHHHH
Q 036589           19 QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLI-ITKLGRAKMFDEMQQILHQLKHDT--RVIPEEIIFCNVIS   95 (176)
Q Consensus        19 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l-i~~~~~~g~~~~a~~~~~~m~~~~--g~~~~~~~~~~li~   95 (176)
                      ..+.+.|.++++.+ ..+           -|+...|.-. .+.+...|++++|.+.|+......  -.+.....+--+..
T Consensus       246 ~~~~~~a~~lL~~~-~~~-----------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w  313 (468)
T PF10300_consen  246 DVPLEEAEELLEEM-LKR-----------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAW  313 (468)
T ss_pred             CCCHHHHHHHHHHH-HHh-----------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHH
Confidence            45677899999998 443           2455555433 345557899999999999765421  13445566666888


Q ss_pred             HHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHH-HHhcCcH-------HHHHHHHHHHH
Q 036589           96 FYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA-LLTCGKL-------DRMKELFISFN  149 (176)
Q Consensus        96 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~-------~~a~~l~~~m~  149 (176)
                      ++.-.++|++|.+.|..+.+.. .-+...|.-+..+ +...|+.       ++|.++|.+..
T Consensus       314 ~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  314 CHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            8899999999999999999643 2233444433332 2346766       88999998864

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=94.62  E-value=0.69  Score=36.93  Aligned_cols=104  Identities=11%  Similarity=0.010  Sum_probs=84.2

Q ss_pred             HHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccH-hHHHHHHHHHHhcCc
Q 036589           59 TKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV-KSLNTLLNALLTCGK  137 (176)
Q Consensus        59 ~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~  137 (176)
                      ++.+..|+++.|...|.+...- . ++|.+.|+.-..+|...|++++|.+==.+-.+.  .|+. .-|+-.-.++...|+
T Consensus        10 naa~s~~d~~~ai~~~t~ai~l-~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~   85 (539)
T KOG0548|consen   10 NAAFSSGDFETAIRLFTEAIML-S-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGD   85 (539)
T ss_pred             HhhcccccHHHHHHHHHHHHcc-C-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhccc
Confidence            4567789999999999999876 3 348999999999999999999998766665543  3653 568888899999999


Q ss_pred             HHHHHHHHHHHHhccccccchHHHHHHHHHh
Q 036589          138 LDRMKELFISFNLKAIAVLDGLCSNLKIIMN  168 (176)
Q Consensus       138 ~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~  168 (176)
                      +++|..-|.+-.+....  +..-++-+.+++
T Consensus        86 ~~eA~~ay~~GL~~d~~--n~~L~~gl~~a~  114 (539)
T KOG0548|consen   86 YEEAILAYSEGLEKDPS--NKQLKTGLAQAY  114 (539)
T ss_pred             HHHHHHHHHHHhhcCCc--hHHHHHhHHHhh
Confidence            99999999998876654  666677776666

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=94.57  E-value=0.84  Score=30.27  Aligned_cols=114  Identities=11%  Similarity=0.067  Sum_probs=78.7

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch--HHHHHHHHHHHhccCHHHHHHHHHhcccCC-----
Q 036589           45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE--IIFCNVISFYGRARLLEHALQVFDEMPSFN-----  117 (176)
Q Consensus        45 ~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----  117 (176)
                      ..+.++..+|...|.            +....|.+. +..++.  ...|+++......+.+.-.+++++.+.-..     
T Consensus         8 g~~~~nL~~w~~fi~------------~~~~y~~~~-~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~   74 (145)
T PF13762_consen    8 GNVLANLEVWKTFIN------------SHLPYMQEE-NASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNII   74 (145)
T ss_pred             cchhhhHHHHHHHHH------------HHHHHhhhc-ccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHh
Confidence            344556666655554            233445544 555554  445888888888888887777777764211     


Q ss_pred             CCccHhHHHHHHHHHHhcCc-HHHHHHHHHHHHhccccccchHHHHHHHHHhhccc
Q 036589          118 VQRTVKSLNTLLNALLTCGK-LDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQV  172 (176)
Q Consensus       118 ~~p~~~~~~~ll~~~~~~g~-~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g  172 (176)
                      -..+..+|++++++..+..- ---+..+|.-|++.++. ++..-|..||.++.+.-
T Consensus        75 ~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~-~t~~dy~~li~~~l~g~  129 (145)
T PF13762_consen   75 GWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIE-FTPSDYSCLIKAALRGY  129 (145)
T ss_pred             hhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHcCC
Confidence            12456789999999977666 34567788999888888 99999999999988753

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.43  E-value=0.011  Score=38.85  Aligned_cols=110  Identities=13%  Similarity=0.078  Sum_probs=71.5

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcC
Q 036589           57 IITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCG  136 (176)
Q Consensus        57 li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g  136 (176)
                      +|..+.+.+.+....++++.+... +...+....+.++..|++.++.++.+.+++....       .-...++..|.+.|
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~-~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~   84 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKE-NKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHG   84 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHT-STC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTT
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcc
Confidence            567777888888888888888877 5567788889999999999888888888774332       22233444444444


Q ss_pred             cHHHHHHHHHHHHh-------------------ccccccchHHHHHHHHHhhccccC
Q 036589          137 KLDRMKELFISFNL-------------------KAIAVLDGLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       137 ~~~~a~~l~~~m~~-------------------~~~~~p~~~t~~~li~~~~~~g~~  174 (176)
                      .+++|.-++.++..                   .-...++...|..++..|...+..
T Consensus        85 l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~l~~~~~  141 (143)
T PF00637_consen   85 LYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYCLDSKPF  141 (143)
T ss_dssp             SHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHHCTSTCT
T ss_pred             hHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHHHhcCcc
Confidence            44444444443321                   000125688999999998877664

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=94.31  E-value=0.79  Score=38.89  Aligned_cols=107  Identities=15%  Similarity=0.044  Sum_probs=81.2

Q ss_pred             HhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHH
Q 036589           62 GRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM  141 (176)
Q Consensus        62 ~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a  141 (176)
                      ...+++..|.+...++.+..+-.+-...+.++.  ..+.|+.++|..+++.....+.. |..|...+-.+|...++.++|
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLs--l~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~   96 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALS--LFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA   96 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHH--HHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence            456789999998888887733333333333332  24789999999999988765533 889999999999999999999


Q ss_pred             HHHHHHHHhccccccchHHHHHHHHHhhccccC
Q 036589          142 KELFISFNLKAIAVLDGLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       142 ~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~  174 (176)
                      ..+++...+.  . |+..--..++.+|+|-+.+
T Consensus        97 ~~~Ye~~~~~--~-P~eell~~lFmayvR~~~y  126 (932)
T KOG2053|consen   97 VHLYERANQK--Y-PSEELLYHLFMAYVREKSY  126 (932)
T ss_pred             HHHHHHHHhh--C-CcHHHHHHHHHHHHHHHHH
Confidence            9999997654  2 6777777888888876654

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.22  E-value=2.3  Score=34.00  Aligned_cols=75  Identities=13%  Similarity=0.245  Sum_probs=56.4

Q ss_pred             HHHHHHHHhccCHHHHHHHHHhccc-CCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589           91 CNVISFYGRARLLEHALQVFDEMPS-FNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI  165 (176)
Q Consensus        91 ~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li  165 (176)
                      ..+..++.+.|+.++|++.|++|.+ ....-+......||.++...+.+.++..++.+-.+...++--..+|+.-+
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL  338 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL  338 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence            3467788889999999999999974 33223455778999999999999999999999765444313355666544

The molecular function of this protein is uncertain.

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=94.12  E-value=0.56  Score=28.77  Aligned_cols=45  Identities=16%  Similarity=0.274  Sum_probs=22.7

Q ss_pred             HHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcc
Q 036589           69 EMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP  114 (176)
Q Consensus        69 ~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  114 (176)
                      ++.+-++.+... .+.|......+-+++|.|..++..|+++|+..+
T Consensus        25 e~rr~mN~l~~~-DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          25 ELRRGLNNLFGY-DLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            344444444444 455555555555555555555555555555444

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.12  E-value=1.2  Score=30.12  Aligned_cols=76  Identities=18%  Similarity=0.095  Sum_probs=48.7

Q ss_pred             HHHHHHHHH---HhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589           53 HYDLIITKL---GRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL  129 (176)
Q Consensus        53 ~y~~li~~~---~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  129 (176)
                      +.+.||...   .+.++.++++.++..++--+.-.+...++-..+  +...|+|.+|+++|+++.+..  |....-..|+
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALl   84 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA--PGFPYAKALL   84 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC--CCChHHHHHH
Confidence            334444443   467899999999999996533333444444433  457899999999999988643  4333333444


Q ss_pred             HHH
Q 036589          130 NAL  132 (176)
Q Consensus       130 ~~~  132 (176)
                      ..|
T Consensus        85 A~C   87 (160)
T PF09613_consen   85 ALC   87 (160)
T ss_pred             HHH
Confidence            333

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=94.11  E-value=2.8  Score=34.54  Aligned_cols=28  Identities=18%  Similarity=0.141  Sum_probs=22.0

Q ss_pred             CCCCHHHHHHHHHhccChhHHHHhhcCC
Q 036589            5 KPTSPFRLASLLHLQKHPKLALQLFKNP   32 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~   32 (176)
                      +.+.|..+--.+....++++|++.|...
T Consensus        74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nA  101 (700)
T KOG1156|consen   74 SHVCWHVLGLLQRSDKKYDEAIKCYRNA  101 (700)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            4567777777777778899999888886

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=93.77  E-value=1.9  Score=31.28  Aligned_cols=83  Identities=11%  Similarity=-0.022  Sum_probs=55.0

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHH--HHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHH
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEII--FCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT  127 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  127 (176)
                      +...+-.....+.+.|++++|.+.|+++.... .......  .-.+..+|.+.+++++|...|++..+.--...-..|-.
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            34444445566677999999999999999873 2222221  23467888999999999999999885432222234445


Q ss_pred             HHHHHH
Q 036589          128 LLNALL  133 (176)
Q Consensus       128 ll~~~~  133 (176)
                      .+.+.+
T Consensus       110 Y~~g~~  115 (243)
T PRK10866        110 YMRGLT  115 (243)
T ss_pred             HHHHHh
Confidence            555543

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=93.76  E-value=0.65  Score=35.85  Aligned_cols=132  Identities=11%  Similarity=0.004  Sum_probs=87.4

Q ss_pred             HHHhccChhHHHHhhcCCC---C-CCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHH
Q 036589           15 LLHLQKHPKLALQLFKNPN---P-NANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIF   90 (176)
Q Consensus        15 ~~~~~~~~~~A~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~   90 (176)
                      .|.+.|++..|...|++..   . ...............-...+..+.-++.+.+++..|.+..+.....  -..|.-..
T Consensus       217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~--~~~N~KAL  294 (397)
T KOG0543|consen  217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL--DPNNVKAL  294 (397)
T ss_pred             HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc--CCCchhHH
Confidence            5778888888888776631   1 1000000000111123446788889999999999999999998876  24566666


Q ss_pred             HHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHH-HHHHHHHhcCcH-HHHHHHHHHHHh
Q 036589           91 CNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN-TLLNALLTCGKL-DRMKELFISFNL  150 (176)
Q Consensus        91 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~g~~-~~a~~l~~~m~~  150 (176)
                      ----.+|...|+++.|+..|+.+++..  |+-...+ -|+..--+.... ++..++|..|-.
T Consensus       295 yRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  295 YRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKLKQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            667788899999999999999998653  6544444 455544454444 455788888854

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=93.75  E-value=1.7  Score=35.68  Aligned_cols=132  Identities=16%  Similarity=0.086  Sum_probs=92.4

Q ss_pred             CCCCCCHHH--HHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHH-HHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036589            3 KAKPTSPFR--LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLL-HYDLIITKLGRAKMFDEMQQILHQLKH   79 (176)
Q Consensus         3 ~p~~~~~~~--l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~y~~li~~~~~~g~~~~a~~~~~~m~~   79 (176)
                      +|+...|..  +...+-+.|+++.|...++.. -           +..|+.. -|-.-.+.+..+|++++|..++++..+
T Consensus       366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~A-I-----------dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e  433 (700)
T KOG1156|consen  366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA-I-----------DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE  433 (700)
T ss_pred             CchHHHHHHHHHHHHHHHcccHHHHHHHHHHH-h-----------ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Confidence            466665554  477888899999999999998 2           3345544 455556888889999999999999986


Q ss_pred             cCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCC-----ccHhHHHHH---HHHHHhcCcHHHHHHHHHHH
Q 036589           80 DTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQ-----RTVKSLNTL---LNALLTCGKLDRMKELFISF  148 (176)
Q Consensus        80 ~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----p~~~~~~~l---l~~~~~~g~~~~a~~l~~~m  148 (176)
                      -  -.+|...=+--.....++.+.++|.++....-+.|..     .+..+.+-+   -.+|.+.|++..|++=|...
T Consensus       434 l--D~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i  508 (700)
T KOG1156|consen  434 L--DTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI  508 (700)
T ss_pred             c--cchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence            6  2466665556777788899999999999998877741     111222222   25677777777776555443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.69  E-value=1.5  Score=30.08  Aligned_cols=81  Identities=10%  Similarity=0.167  Sum_probs=58.7

Q ss_pred             HHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCcc--HhHHHHHHHHHHhcCcHHHHHHHHHH
Q 036589           70 MQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRT--VKSLNTLLNALLTCGKLDRMKELFIS  147 (176)
Q Consensus        70 a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~l~~~  147 (176)
                      -..-++..+.+.+-.--...+..+...|++.|+.+.|.+.|.++.+....+.  ...+-.+|....-.+++..+...+.+
T Consensus        19 Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~k   98 (177)
T PF10602_consen   19 LEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEK   98 (177)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            3333444444423333346778899999999999999999999987654443  34567788888889999998888877


Q ss_pred             HHh
Q 036589          148 FNL  150 (176)
Q Consensus       148 m~~  150 (176)
                      ...
T Consensus        99 a~~  101 (177)
T PF10602_consen   99 AES  101 (177)
T ss_pred             HHH
Confidence            653

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.64  E-value=2.2  Score=31.74  Aligned_cols=141  Identities=16%  Similarity=0.062  Sum_probs=89.4

Q ss_pred             HHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHH
Q 036589           15 LLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVI   94 (176)
Q Consensus        15 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li   94 (176)
                      .....|++.+|..+|+.. ....       +.   +...--.+..+|...|+.+.|..++..+... --.........-|
T Consensus       143 ~~~~~e~~~~a~~~~~~a-l~~~-------~~---~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i  210 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQA-LQAA-------PE---NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQI  210 (304)
T ss_pred             hhhhccchhhHHHHHHHH-HHhC-------cc---cchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHH
Confidence            456678888888888876 2210       11   3445556888999999999999999998876 2222233323334


Q ss_pred             HHHHhccCHHHHHHHHHhcccCCCCc-cHhHHHHHHHHHHhcCcHHHHHHHHHHHHh--ccccccchHHHHHHHHHhhcc
Q 036589           95 SFYGRARLLEHALQVFDEMPSFNVQR-TVKSLNTLLNALLTCGKLDRMKELFISFNL--KAIAVLDGLCSNLKIIMNDSQ  171 (176)
Q Consensus        95 ~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~--~~~~~p~~~t~~~li~~~~~~  171 (176)
                      ..+.+.....+...+-....+   .| |...--.+-..+...|+.+.|.+.+-.+..  .+..  |...=..|++.+.-.
T Consensus       211 ~ll~qaa~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~--d~~~Rk~lle~f~~~  285 (304)
T COG3118         211 ELLEQAAATPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE--DGEARKTLLELFEAF  285 (304)
T ss_pred             HHHHHHhcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc--CcHHHHHHHHHHHhc
Confidence            444444444433344333332   24 666667788889999999999988777654  3444  566666666666554


Q ss_pred             c
Q 036589          172 V  172 (176)
Q Consensus       172 g  172 (176)
                      |
T Consensus       286 g  286 (304)
T COG3118         286 G  286 (304)
T ss_pred             C
Confidence            4

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=93.62  E-value=2.8  Score=35.20  Aligned_cols=118  Identities=13%  Similarity=-0.053  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHH
Q 036589           53 HYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL  132 (176)
Q Consensus        53 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~  132 (176)
                      .|......+.+.+..++|...+.+....  .......|.-.-..+...|.+++|.+.|....... +-++.+.+++-..+
T Consensus       652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~l  728 (799)
T KOG4162|consen  652 LWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELL  728 (799)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence            4555666777888888998888888765  23444555555567777899999999999877543 23556788899999


Q ss_pred             HhcCcHHHHHH--HHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589          133 LTCGKLDRMKE--LFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       133 ~~~g~~~~a~~--l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      .+.|+..-|..  ++.++.+.++.  +...|-.+-..+-+.|+++
T Consensus       729 le~G~~~la~~~~~L~dalr~dp~--n~eaW~~LG~v~k~~Gd~~  771 (799)
T KOG4162|consen  729 LELGSPRLAEKRSLLSDALRLDPL--NHEAWYYLGEVFKKLGDSK  771 (799)
T ss_pred             HHhCCcchHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHccchH
Confidence            99999888887  99999998886  8888888888888888764

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=93.58  E-value=0.5  Score=40.65  Aligned_cols=131  Identities=9%  Similarity=-0.030  Sum_probs=88.4

Q ss_pred             CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589            5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI   84 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~   84 (176)
                      +...+....+.|.+..+++.|..+.-.. .+.        .+..--..-|--..-.|-+.+++.++..-|+...+.  -+
T Consensus       525 daeaaaa~adtyae~~~we~a~~I~l~~-~qk--------a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--dP  593 (1238)
T KOG1127|consen  525 DAEAAAASADTYAEESTWEEAFEICLRA-AQK--------APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--DP  593 (1238)
T ss_pred             hhhhHHHHHHHhhccccHHHHHHHHHHH-hhh--------chHHHHHhhhhhccccccCccchhhHHHHHHHHhcC--Cc
Confidence            4557788899999999999998884444 221        111111122222344556788999999888888765  24


Q ss_pred             CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHH--HHHHHhcCcHHHHHHHHHHHH
Q 036589           85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTL--LNALLTCGKLDRMKELFISFN  149 (176)
Q Consensus        85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l--l~~~~~~g~~~~a~~l~~~m~  149 (176)
                      -|...|..+..+|.++|++..|.++|.+.-..+  |+. .|...  --..+-.|++++|.+.+....
T Consensus       594 kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii  657 (1238)
T KOG1127|consen  594 KDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLS-KYGRFKEAVMECDNGKYKEALDALGLII  657 (1238)
T ss_pred             hhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            578899999999999999999999998766432  432 22222  233466788888887776654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=93.51  E-value=0.28  Score=25.06  Aligned_cols=25  Identities=12%  Similarity=0.113  Sum_probs=12.3

Q ss_pred             HHHHHHHHhccCHHHHHHHHHhccc
Q 036589           91 CNVISFYGRARLLEHALQVFDEMPS  115 (176)
Q Consensus        91 ~~li~~~~~~g~~~~a~~~~~~m~~  115 (176)
                      ..+..+|.+.|++++|+++|++..+
T Consensus         5 ~~la~~~~~~G~~~~A~~~~~~~l~   29 (44)
T PF13428_consen    5 LALARAYRRLGQPDEAERLLRRALA   29 (44)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3444455555555555555555443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.36  E-value=2.3  Score=31.13  Aligned_cols=66  Identities=14%  Similarity=0.130  Sum_probs=49.5

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhcccCC--CCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPSFN--VQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI  153 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~  153 (176)
                      ...|+.-+..| +.|++..|.+.|...++..  -.-..-.+-.|..++...|+++.|..+|..+.+...
T Consensus       142 ~~~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P  209 (262)
T COG1729         142 TKLYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYP  209 (262)
T ss_pred             hHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCC
Confidence            44777666654 7888999999999988543  111334456688999999999999999999876543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.29  E-value=0.32  Score=24.07  Aligned_cols=29  Identities=28%  Similarity=0.268  Sum_probs=21.0

Q ss_pred             HhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589          122 VKSLNTLLNALLTCGKLDRMKELFISFNL  150 (176)
Q Consensus       122 ~~~~~~ll~~~~~~g~~~~a~~l~~~m~~  150 (176)
                      ..+++.|-..|...|++++|.+++++..+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            35677788888888888888888877653

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=93.06  E-value=1.3  Score=27.46  Aligned_cols=46  Identities=7%  Similarity=0.078  Sum_probs=24.2

Q ss_pred             HHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589          105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL  150 (176)
Q Consensus       105 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~  150 (176)
                      +..+-+..+....+.|.+....+.|.+|.+.+++..|.++|+..+.
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~   73 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD   73 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3444445555555566666666666666666666666666665543

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=92.85  E-value=0.38  Score=23.77  Aligned_cols=25  Identities=24%  Similarity=0.363  Sum_probs=11.8

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHhc
Q 036589           89 IFCNVISFYGRARLLEHALQVFDEM  113 (176)
Q Consensus        89 ~~~~li~~~~~~g~~~~a~~~~~~m  113 (176)
                      +++.|...|...|++++|..++++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~a   28 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEA   28 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHH
Confidence            4444555555555555555544443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=92.72  E-value=3.8  Score=32.94  Aligned_cols=92  Identities=11%  Similarity=0.018  Sum_probs=68.2

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCc
Q 036589           58 ITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGK  137 (176)
Q Consensus        58 i~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~  137 (176)
                      .+.+.+.|++..|.+.|.++... . +-|...|+...-+|.+.|.+..|+.-.+...+.. ++....|.-=..++....+
T Consensus       365 Gne~Fk~gdy~~Av~~YteAIkr-~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~  441 (539)
T KOG0548|consen  365 GNEAFKKGDYPEAVKHYTEAIKR-D-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKE  441 (539)
T ss_pred             HHHHHhccCHHHHHHHHHHHHhc-C-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHH
Confidence            45556789999999999999887 2 5677899999999999999999988777776542 2233334444445555567


Q ss_pred             HHHHHHHHHHHHhcc
Q 036589          138 LDRMKELFISFNLKA  152 (176)
Q Consensus       138 ~~~a~~l~~~m~~~~  152 (176)
                      +++|.+.|.+-.+..
T Consensus       442 ydkAleay~eale~d  456 (539)
T KOG0548|consen  442 YDKALEAYQEALELD  456 (539)
T ss_pred             HHHHHHHHHHHHhcC
Confidence            888998888877753

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.50  E-value=2.4  Score=35.50  Aligned_cols=109  Identities=17%  Similarity=0.123  Sum_probs=76.5

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      |.+-.+.-+...|+-.+|.++=.+. +             -||-..|-.-+.+++..+++++.+++=+..+..-|     
T Consensus       686 Sl~dTv~~li~~g~~k~a~ql~~~F-k-------------ipdKr~~wLk~~aLa~~~kweeLekfAkskksPIG-----  746 (829)
T KOG2280|consen  686 SLHDTVTTLILIGQNKRAEQLKSDF-K-------------IPDKRLWWLKLTALADIKKWEELEKFAKSKKSPIG-----  746 (829)
T ss_pred             cHHHHHHHHHHccchHHHHHHHHhc-C-------------CcchhhHHHHHHHHHhhhhHHHHHHHHhccCCCCC-----
Confidence            4556677777788888888887666 2             23666777778888888888887766665554333     


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHH
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI  146 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~  146 (176)
                        |-.++.+|.+.|+.++|...+......     .    -...+|.+.|++.+|.++-.
T Consensus       747 --y~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~  794 (829)
T KOG2280|consen  747 --YLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAA  794 (829)
T ss_pred             --chhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHH
Confidence              455778888888888888887766521     1    56677888888888776643

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=92.44  E-value=2.1  Score=28.14  Aligned_cols=105  Identities=12%  Similarity=-0.047  Sum_probs=72.8

Q ss_pred             HHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhH---HHHHHHHHHhc
Q 036589           59 TKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS---LNTLLNALLTC  135 (176)
Q Consensus        59 ~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~  135 (176)
                      -+++..|+.+.|.+.|.+...-  ..-....||.-..++.-.|+.++|+.=+++..+..-.-+...   |.-=-..|...
T Consensus        51 valaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~  128 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL  128 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence            4667899999999999998865  445778999999999999999999998888775321222222   22222345667


Q ss_pred             CcHHHHHHHHHHHHhcccc---------ccchHHHHHHH
Q 036589          136 GKLDRMKELFISFNLKAIA---------VLDGLCSNLKI  165 (176)
Q Consensus       136 g~~~~a~~l~~~m~~~~~~---------~p~~~t~~~li  165 (176)
                      |+-+.|..=|+...+.|.+         .|-....|.|+
T Consensus       129 g~dd~AR~DFe~AA~LGS~FAr~QLV~lNPYAAlCN~ML  167 (175)
T KOG4555|consen  129 GNDDAARADFEAAAQLGSKFAREQLVELNPYAALCNQML  167 (175)
T ss_pred             CchHHHHHhHHHHHHhCCHHHHHHHHhcChHHHHHHHHH
Confidence            8877777777666554432         15555555554

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.42  E-value=0.61  Score=35.07  Aligned_cols=99  Identities=13%  Similarity=0.059  Sum_probs=65.9

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~   86 (176)
                      .+...++..-....+++.+...+-.+....       .....|+...|. +++-| -.=+++++.-++..=.+. |+-||
T Consensus        65 ~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~-------~a~~~~~~~~~~-~irll-lky~pq~~i~~l~npIqY-GiF~d  134 (418)
T KOG4570|consen   65 LTVDRLVDVISSREEIDDAEYYLYKLRHSP-------NAWYLRNWTIHT-WIRLL-LKYDPQKAIYTLVNPIQY-GIFPD  134 (418)
T ss_pred             eehhhhhhccccccchhHHHHHHHHHhcCc-------chhhhccccHHH-HHHHH-HccChHHHHHHHhCcchh-ccccc
Confidence            344455555555677788877777662221       133444444432 23333 233567888777777777 99999


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhccc
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPS  115 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~  115 (176)
                      .++++.+|+.+.+.+++.+|.++...|..
T Consensus       135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~  163 (418)
T KOG4570|consen  135 QFTFCLLMDSFLKKENYKDAASVVTEVMM  163 (418)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            99999999999999999988887776653

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=92.29  E-value=2.2  Score=28.18  Aligned_cols=81  Identities=5%  Similarity=-0.115  Sum_probs=58.7

Q ss_pred             HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHH
Q 036589           13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCN   92 (176)
Q Consensus        13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~   92 (176)
                      -....+.|++.+|.+.|+.+ ..+.       +.-+.....--.++.+|-+.+++++|...++...+. ...--.+-|-.
T Consensus        17 a~~~l~~~~Y~~A~~~le~L-~~ry-------P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-hP~hp~vdYa~   87 (142)
T PF13512_consen   17 AQEALQKGNYEEAIKQLEAL-DTRY-------PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-HPTHPNVDYAY   87 (142)
T ss_pred             HHHHHHhCCHHHHHHHHHHH-HhcC-------CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCCCCccHHH
Confidence            34556789999999999999 5543       333445566777999999999999999999999987 33333455665


Q ss_pred             HHHHHHhccC
Q 036589           93 VISFYGRARL  102 (176)
Q Consensus        93 li~~~~~~g~  102 (176)
                      .+.+++.-..
T Consensus        88 Y~~gL~~~~~   97 (142)
T PF13512_consen   88 YMRGLSYYEQ   97 (142)
T ss_pred             HHHHHHHHHH
Confidence            6666544333

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=92.22  E-value=2.9  Score=29.28  Aligned_cols=100  Identities=8%  Similarity=-0.033  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCC-CCccHhHHHHH
Q 036589           51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV-IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFN-VQRTVKSLNTL  128 (176)
Q Consensus        51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~l  128 (176)
                      ...+-.....+...|++.+|.+.|+.+...... .--....-.+..++.+.|++++|...|+.+.+.- -.|. ..+-..
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~-~~~A~Y   83 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK-ADYALY   83 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT-HHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-hhhHHH
Confidence            334444566777899999999999999986322 2223344568899999999999999999987532 1121 222222


Q ss_pred             HHHHHh-------------cCcHHHHHHHHHHHHhc
Q 036589          129 LNALLT-------------CGKLDRMKELFISFNLK  151 (176)
Q Consensus       129 l~~~~~-------------~g~~~~a~~l~~~m~~~  151 (176)
                      +.+.+.             .+...+|...|+.+.+.
T Consensus        84 ~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~  119 (203)
T PF13525_consen   84 MLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR  119 (203)
T ss_dssp             HHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH
Confidence            222221             22345677778777654

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=92.00  E-value=2.3  Score=27.92  Aligned_cols=68  Identities=15%  Similarity=0.139  Sum_probs=49.5

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCC
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQ  119 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  119 (176)
                      +....+..++.+.+.|+-++..+++.++.+.  -+++....--+..+|.+.|+..++.+++.+.=+.|++
T Consensus        85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn--~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN--EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             --HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence            4566777889999999999999999999865  3566667777999999999999999999887776643

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=91.97  E-value=2.6  Score=28.16  Aligned_cols=77  Identities=18%  Similarity=0.075  Sum_probs=49.7

Q ss_pred             HHHHHHHHHH---hcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589           53 HYDLIITKLG---RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL  129 (176)
Q Consensus        53 ~y~~li~~~~---~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  129 (176)
                      ..+.||....   ...++++++.++..|.--+.-.+...+|-..+  +...|+|++|+++|++..+.+  + ...|..-|
T Consensus         9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~--~-~~p~~kAL   83 (153)
T TIGR02561         9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA--G-APPYGKAL   83 (153)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC--C-CchHHHHH
Confidence            3444444443   57899999999999996533334444554444  457899999999999999754  2 22344444


Q ss_pred             HHHHh
Q 036589          130 NALLT  134 (176)
Q Consensus       130 ~~~~~  134 (176)
                      .++|-
T Consensus        84 ~A~CL   88 (153)
T TIGR02561        84 LALCL   88 (153)
T ss_pred             HHHHH
Confidence            44443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=91.87  E-value=1.9  Score=26.81  Aligned_cols=61  Identities=15%  Similarity=0.189  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcc-cCCCCccHhHHHHHHHH
Q 036589           68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP-SFNVQRTVKSLNTLLNA  131 (176)
Q Consensus        68 ~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~  131 (176)
                      -+..+-++.+... .+.|......+.+++|.|..++..|+++|+..+ +.|  +....|..++.-
T Consensus        27 we~rrglN~l~~~-DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE   88 (108)
T PF02284_consen   27 WELRRGLNNLFGY-DLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE   88 (108)
T ss_dssp             HHHHHHHHHHTTS-SB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred             HHHHHHHHHHhcc-ccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence            3577778888877 899999999999999999999999999999887 333  222266666543

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.77  E-value=3.1  Score=28.73  Aligned_cols=146  Identities=13%  Similarity=0.090  Sum_probs=97.1

Q ss_pred             HHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchH-HHHHH-
Q 036589           16 LHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEI-IFCNV-   93 (176)
Q Consensus        16 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~-~~~~l-   93 (176)
                      +.+.+..++|+.-|..+++.+.       .++ | +-.--.+.......|+...|..-|.++-.. .-.|... -..-| 
T Consensus        68 lA~~~k~d~Alaaf~~lektg~-------g~Y-p-vLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~ARlr  137 (221)
T COG4649          68 LAQENKTDDALAAFTDLEKTGY-------GSY-P-VLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLARLR  137 (221)
T ss_pred             HHHcCCchHHHHHHHHHHhcCC-------Ccc-h-HHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHHHH
Confidence            4568899999999999954432       222 2 222223445566889999999999999987 4444433 12222 


Q ss_pred             -HHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHH--HHHHHHHhhc
Q 036589           94 -ISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLC--SNLKIIMNDS  170 (176)
Q Consensus        94 -i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t--~~~li~~~~~  170 (176)
                       ...+..+|.+++...-.+.+-..+-.--...-..|--+--+.|++.+|.++|.......-. |....  -++|++...+
T Consensus       138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~a-prnirqRAq~mldlI~s  216 (221)
T COG4649         138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQA-PRNIRQRAQIMLDLIDS  216 (221)
T ss_pred             HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccC-cHHHHHHHHHHHHHHhc
Confidence             2345678999999999988886554444555667777778999999999999998775444 44332  2344444444


Q ss_pred             cc
Q 036589          171 QV  172 (176)
Q Consensus       171 ~g  172 (176)
                      .|
T Consensus       217 ~g  218 (221)
T COG4649         217 SG  218 (221)
T ss_pred             cc
Confidence            33

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=91.48  E-value=1.4  Score=27.07  Aligned_cols=63  Identities=6%  Similarity=-0.046  Sum_probs=45.8

Q ss_pred             HHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHH
Q 036589          103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIM  167 (176)
Q Consensus       103 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~  167 (176)
                      .=++.+-+..+....+.|++...++-|++|.+.+++..|.++|+..+.+.-  .+..+|..+++-
T Consensus        23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lqe   85 (103)
T cd00923          23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQE   85 (103)
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHHH
Confidence            335666677777777889999999999999999999999999987764322  234467666653

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PRK15331 chaperone protein SicA; Provisional

Probab=91.35  E-value=1.4  Score=29.92  Aligned_cols=89  Identities=12%  Similarity=-0.146  Sum_probs=65.5

Q ss_pred             HHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHH
Q 036589           14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNV   93 (176)
Q Consensus        14 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~l   93 (176)
                      .-+-..|++++|..+|.-+ ..-        .  ..+..-|.-|..++-..+++++|...|.....- +. -|...+-..
T Consensus        45 y~~y~~Gk~~eA~~~F~~L-~~~--------d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~~-~dp~p~f~a  111 (165)
T PRK15331         45 YEFYNQGRLDEAETFFRFL-CIY--------D--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-LK-NDYRPVFFT  111 (165)
T ss_pred             HHHHHCCCHHHHHHHHHHH-HHh--------C--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cc-CCCCccchH
Confidence            3455689999999999987 221        1  124556677777778899999999999887655 22 222334446


Q ss_pred             HHHHHhccCHHHHHHHHHhccc
Q 036589           94 ISFYGRARLLEHALQVFDEMPS  115 (176)
Q Consensus        94 i~~~~~~g~~~~a~~~~~~m~~  115 (176)
                      -.+|...|+.+.|...|+...+
T Consensus       112 gqC~l~l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        112 GQCQLLMRKAAKARQCFELVNE  133 (165)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHh
Confidence            7889999999999999998886

>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=91.15  E-value=2.5  Score=26.50  Aligned_cols=28  Identities=14%  Similarity=0.102  Sum_probs=23.9

Q ss_pred             hHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589          123 KSLNTLLNALLTCGKLDRMKELFISFNL  150 (176)
Q Consensus       123 ~~~~~ll~~~~~~g~~~~a~~l~~~m~~  150 (176)
                      .-|..|+..|...|..++|.+++.++.+
T Consensus        40 ~~~~eL~~lY~~kg~h~~AL~ll~~l~~   67 (108)
T PF10366_consen   40 GKYQELVDLYQGKGLHRKALELLKKLAD   67 (108)
T ss_pred             CCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence            3488889999999999999999988876

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=91.07  E-value=4.8  Score=29.90  Aligned_cols=87  Identities=16%  Similarity=0.199  Sum_probs=56.1

Q ss_pred             HHHHHHhcCChHHHHHH-HHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHH--
Q 036589           57 IITKLGRAKMFDEMQQI-LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL--  133 (176)
Q Consensus        57 li~~~~~~g~~~~a~~~-~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~--  133 (176)
                      =|+++++.+++.++... ++.......+.|...  ..-|-.|+|.|++....++-..-.+..-.-+..-|.++...|.  
T Consensus        89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIl--eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~  166 (309)
T PF07163_consen   89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKIL--ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH  166 (309)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH--HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence            48999999999998754 333333323444433  4445668899999888877776654222223333666655554  


Q ss_pred             ---hcCcHHHHHHHH
Q 036589          134 ---TCGKLDRMKELF  145 (176)
Q Consensus       134 ---~~g~~~~a~~l~  145 (176)
                         -.|.+++|+++.
T Consensus       167 VLlPLG~~~eAeelv  181 (309)
T PF07163_consen  167 VLLPLGHFSEAEELV  181 (309)
T ss_pred             HHhccccHHHHHHHH
Confidence               569999999887

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.90  E-value=4.6  Score=30.96  Aligned_cols=84  Identities=7%  Similarity=-0.064  Sum_probs=44.3

Q ss_pred             ccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHH----HHH
Q 036589           19 QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFC----NVI   94 (176)
Q Consensus        19 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~----~li   94 (176)
                      +|++++|-..++++           .+.++-|...+.-.=.+|.-.|+...-...++++...  -.+|...|.    ...
T Consensus       116 ~g~~h~a~~~wdkl-----------L~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~Gmya  182 (491)
T KOG2610|consen  116 RGKHHEAAIEWDKL-----------LDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYA  182 (491)
T ss_pred             cccccHHHHHHHHH-----------HHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHH
Confidence            45666665555555           1234456666666666666666666666555555533  123332222    233


Q ss_pred             HHHHhccCHHHHHHHHHhccc
Q 036589           95 SFYGRARLLEHALQVFDEMPS  115 (176)
Q Consensus        95 ~~~~~~g~~~~a~~~~~~m~~  115 (176)
                      -++..+|-+++|++.-++..+
T Consensus       183 FgL~E~g~y~dAEk~A~ralq  203 (491)
T KOG2610|consen  183 FGLEECGIYDDAEKQADRALQ  203 (491)
T ss_pred             hhHHHhccchhHHHHHHhhcc
Confidence            344456666666655554443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=90.90  E-value=6.6  Score=30.86  Aligned_cols=108  Identities=10%  Similarity=-0.040  Sum_probs=74.1

Q ss_pred             HhcCChHHHHHHHHHHhhcC--CCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH-H--HHHhcC
Q 036589           62 GRAKMFDEMQQILHQLKHDT--RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL-N--ALLTCG  136 (176)
Q Consensus        62 ~~~g~~~~a~~~~~~m~~~~--g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~--~~~~~g  136 (176)
                      .+.|.+..|.+.|.+.....  ..+++...|.....+..+.|+..+|+.-.+...+    .|..-...++ .  ++.-.+
T Consensus       260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~ra~c~l~le  335 (486)
T KOG0550|consen  260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRRANCHLALE  335 (486)
T ss_pred             hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHHHHHHHHHH
Confidence            36799999999999988652  3677888888888999999999999999988874    4544333333 3  333457


Q ss_pred             cHHHHHHHHHHHHhccccccchHHHHHHHHHhhcccc
Q 036589          137 KLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVR  173 (176)
Q Consensus       137 ~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~  173 (176)
                      +|++|.+-|+...+..-.--...++.-...++-++.|
T Consensus       336 ~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkR  372 (486)
T KOG0550|consen  336 KWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKR  372 (486)
T ss_pred             HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhh
Confidence            8888888888765533220244555555544444433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=90.88  E-value=2.2  Score=36.47  Aligned_cols=125  Identities=9%  Similarity=0.006  Sum_probs=82.8

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCC-CCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNAND-TEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP   85 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~   85 (176)
                      ..|..|.+-|.+..+++-|.-.+-.|+..+++ +.+.....  |+ ..=..+.-.-...|.+++|..+|.+-++.     
T Consensus       758 ~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~--~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~-----  829 (1416)
T KOG3617|consen  758 SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN--GE-EDEAKVAVLAIELGMLEEALILYRQCKRY-----  829 (1416)
T ss_pred             HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC--Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----
Confidence            46888899999999999888888887433321 00000000  11 11122223335789999999999998876     


Q ss_pred             chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHH
Q 036589           86 EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFIS  147 (176)
Q Consensus        86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~  147 (176)
                           -.|=+.|...|.|++|.++-+.=.+-   .-..||......+...++.+.|++.|++
T Consensus       830 -----DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~AleyyEK  883 (1416)
T KOG3617|consen  830 -----DLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAALEYYEK  883 (1416)
T ss_pred             -----HHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHHHHHHHh
Confidence                 23445677789999999987755432   3345677777788888889988888765

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=90.84  E-value=6.6  Score=30.75  Aligned_cols=29  Identities=17%  Similarity=0.064  Sum_probs=21.6

Q ss_pred             HHHHHhcCcHHHHHHHHHHHHhccccccch
Q 036589          129 LNALLTCGKLDRMKELFISFNLKAIAVLDG  158 (176)
Q Consensus       129 l~~~~~~g~~~~a~~l~~~m~~~~~~~p~~  158 (176)
                      -.++.+.|++.++-.+++.+=+...- |+.
T Consensus       270 Aralf~d~~~rKg~~ilE~aWK~ePH-P~i  298 (531)
T COG3898         270 ARALFRDGNLRKGSKILETAWKAEPH-PDI  298 (531)
T ss_pred             HHHHHhccchhhhhhHHHHHHhcCCC-hHH
Confidence            36778888888888888888666554 654

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=90.81  E-value=5.4  Score=29.70  Aligned_cols=85  Identities=13%  Similarity=0.047  Sum_probs=67.5

Q ss_pred             CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHh-----cccCCCCcc
Q 036589           47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDE-----MPSFNVQRT  121 (176)
Q Consensus        47 ~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-----m~~~~~~p~  121 (176)
                      -.++..+-..+|..+++.+++....++++.-....+..-|...|..+|+.-.+.|+..-...+.++     +.+.++..+
T Consensus       198 ~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~  277 (292)
T PF13929_consen  198 KSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVT  277 (292)
T ss_pred             cCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCC
Confidence            456777788899999999999999999999887767888999999999999999999888877764     345666555


Q ss_pred             HhHHHHHHHH
Q 036589          122 VKSLNTLLNA  131 (176)
Q Consensus       122 ~~~~~~ll~~  131 (176)
                      ...-..+-..
T Consensus       278 ~~L~~~L~~L  287 (292)
T PF13929_consen  278 DELRSQLSEL  287 (292)
T ss_pred             HHHHHHHHHH
Confidence            5444444333

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=90.79  E-value=0.046  Score=35.86  Aligned_cols=90  Identities=9%  Similarity=0.107  Sum_probs=61.2

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~   86 (176)
                      .....+++.|.+.+.+.....+++.+...          +..-+....+.++..|++.++.+..+++++...   .+.+ 
T Consensus         8 ~~~~~vi~~~~~~~~~~~l~~yLe~~~~~----------~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd~-   73 (143)
T PF00637_consen    8 LEISEVISAFEERNQPEELIEYLEALVKE----------NKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYDL-   73 (143)
T ss_dssp             SCSCCCHHHCTTTT-GGGCTCCHHHHHHT----------STC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS-C-
T ss_pred             cCHHHHHHHHHhCCCHHHHHHHHHHHHhc----------ccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccCH-
Confidence            34455788888889999998888888322          222468899999999999998888888877221   2222 


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhcc
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMP  114 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~  114 (176)
                          ..++..|.+.|.+++|.-++..+.
T Consensus        74 ----~~~~~~c~~~~l~~~a~~Ly~~~~   97 (143)
T PF00637_consen   74 ----DKALRLCEKHGLYEEAVYLYSKLG   97 (143)
T ss_dssp             ----THHHHHHHTTTSHHHHHHHHHCCT
T ss_pred             ----HHHHHHHHhcchHHHHHHHHHHcc
Confidence                445666666666767666666554

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=90.71  E-value=1.6  Score=28.64  Aligned_cols=94  Identities=14%  Similarity=-0.027  Sum_probs=71.6

Q ss_pred             HHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch--HHHHH
Q 036589           15 LLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE--IIFCN   92 (176)
Q Consensus        15 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~--~~~~~   92 (176)
                      ++...|+.+.|++.|.+. ..          -.+.....||.=.+++.-.|+.++|..=+++..+-.|-+--.  ..|..
T Consensus        52 alaE~g~Ld~AlE~F~qa-l~----------l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQ  120 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQA-LC----------LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQ  120 (175)
T ss_pred             HHHhccchHHHHHHHHHH-HH----------hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence            466789999999999986 22          223467899999999999999999999888888765654322  23333


Q ss_pred             HHHHHHhccCHHHHHHHHHhcccCCCC
Q 036589           93 VISFYGRARLLEHALQVFDEMPSFNVQ  119 (176)
Q Consensus        93 li~~~~~~g~~~~a~~~~~~m~~~~~~  119 (176)
                      --..|...|+-+.|..=|+...+.|.+
T Consensus       121 Rg~lyRl~g~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  121 RGLLYRLLGNDDAARADFEAAAQLGSK  147 (175)
T ss_pred             HHHHHHHhCchHHHHHhHHHHHHhCCH
Confidence            345677889999999999988877743

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=90.67  E-value=5.1  Score=29.21  Aligned_cols=150  Identities=9%  Similarity=-0.035  Sum_probs=92.2

Q ss_pred             HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch--HHH
Q 036589           13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE--IIF   90 (176)
Q Consensus        13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~--~~~   90 (176)
                      ...-.+.|++++|.+.|+.+....        +.-+....+--.++.++-+.++++.|....++..+..+-.||.  ..|
T Consensus        41 g~~~L~~gn~~~A~~~fe~l~~~~--------p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          41 GLTELQKGNYEEAIKYFEALDSRH--------PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcC--------CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            344556899999999999995332        3334456677778888899999999999999998885555543  333


Q ss_pred             HHHHHHHHhcc----C---HHHHHHHHHhccc----CCCCccHhH-----------HH-HHHHHHHhcCcHHHHHHHHHH
Q 036589           91 CNVISFYGRAR----L---LEHALQVFDEMPS----FNVQRTVKS-----------LN-TLLNALLTCGKLDRMKELFIS  147 (176)
Q Consensus        91 ~~li~~~~~~g----~---~~~a~~~~~~m~~----~~~~p~~~~-----------~~-~ll~~~~~~g~~~~a~~l~~~  147 (176)
                      -..+..+....    +   ..+|..-|+++++    +...||...           ++ .+.+-|.+.|.+..|..=+++
T Consensus       113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~  192 (254)
T COG4105         113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEE  192 (254)
T ss_pred             HHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            33333222222    2   2344444444442    333333322           22 344677889999999999999


Q ss_pred             HHhccccccchHHH---HHHHHHhhccc
Q 036589          148 FNLKAIAVLDGLCS---NLKIIMNDSQV  172 (176)
Q Consensus       148 m~~~~~~~p~~~t~---~~li~~~~~~g  172 (176)
                      |.+.-.  -+..+.   -.|.++|-..|
T Consensus       193 v~e~y~--~t~~~~eaL~~l~eaY~~lg  218 (254)
T COG4105         193 VLENYP--DTSAVREALARLEEAYYALG  218 (254)
T ss_pred             HHhccc--cccchHHHHHHHHHHHHHhC
Confidence            988722  233333   33444554444

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=90.20  E-value=6.9  Score=30.39  Aligned_cols=76  Identities=11%  Similarity=0.052  Sum_probs=53.8

Q ss_pred             HHHHHHHhccCHHHHHHHHHhcccCC---CCccHhHHHHHHHHHHh---cCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589           92 NVISFYGRARLLEHALQVFDEMPSFN---VQRTVKSLNTLLNALLT---CGKLDRMKELFISFNLKAIAVLDGLCSNLKI  165 (176)
Q Consensus        92 ~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~---~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li  165 (176)
                      .++-.|....+++.-+++.+.+...-   +.-+...---+.-++.+   .|+.++|++++..+....-. ++..||..+-
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~-~~~d~~gL~G  224 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDEN-PDPDTLGLLG  224 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCC-CChHHHHHHH
Confidence            46667999999999999999998641   11122222244455566   89999999999997666666 7778887665


Q ss_pred             HHh
Q 036589          166 IMN  168 (176)
Q Consensus       166 ~~~  168 (176)
                      ..|
T Consensus       225 RIy  227 (374)
T PF13281_consen  225 RIY  227 (374)
T ss_pred             HHH
Confidence            544

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=90.03  E-value=3  Score=31.16  Aligned_cols=155  Identities=17%  Similarity=0.230  Sum_probs=97.3

Q ss_pred             CCCCCHHHHHHHHHhccChhHHHHhhcCCC------CCCCCCC---C-------CCCCCCCCcHHHHHHHHHHHHhcCC-
Q 036589            4 AKPTSPFRLASLLHLQKHPKLALQLFKNPN------PNANDTE---A-------PPLKPFRYNLLHYDLIITKLGRAKM-   66 (176)
Q Consensus         4 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~---~-------~~~~~~~~~~~~y~~li~~~~~~g~-   66 (176)
                      -.+++-..++..+....+..+|-..|.-..      ..+-.+.   .       ........|+.-|-..+.......+ 
T Consensus       164 gk~v~~~~~ie~lwpe~D~kka~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv~e~es~~rqi~~inlt  243 (361)
T COG3947         164 GKEVTSWEAIEALWPEKDEKKASSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDVQEYESLARQIEAINLT  243 (361)
T ss_pred             CCcccHhHHHHHHccccchhhHHHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccHHHHHHHhhhhhccccC
Confidence            345666667777777777666654443210      0000000   0       0123345677777777766655443 


Q ss_pred             hHHHHHHHHHHhhcCCCCCc-----------------hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589           67 FDEMQQILHQLKHDTRVIPE-----------------EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL  129 (176)
Q Consensus        67 ~~~a~~~~~~m~~~~g~~~~-----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  129 (176)
                      ++++.++....+..  +-|+                 ..+++.+...|.++|.+.+|.++.+...... +.+...+-.|+
T Consensus       244 ide~kelv~~ykgd--yl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm  320 (361)
T COG3947         244 IDELKELVGQYKGD--YLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLM  320 (361)
T ss_pred             HHHHHHHHHHhcCC--cCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHH
Confidence            67777766666533  2221                 1344556788999999999999999888654 56778888999


Q ss_pred             HHHHhcCcHHHHHHHHHHHH-----hccccccchHHHH
Q 036589          130 NALLTCGKLDRMKELFISFN-----LKAIAVLDGLCSN  162 (176)
Q Consensus       130 ~~~~~~g~~~~a~~l~~~m~-----~~~~~~p~~~t~~  162 (176)
                      ..+...|+--.|.+-+++|.     +.|+. .|...++
T Consensus       321 ~~la~~gD~is~~khyerya~vleaelgi~-vddsiee  357 (361)
T COG3947         321 ASLATLGDEISAIKHYERYAEVLEAELGID-VDDSIEE  357 (361)
T ss_pred             HHHHHhccchhhhhHHHHHHHHHHHHhCCC-cchhHHH
Confidence            99999999777777776664     46776 6655554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=89.41  E-value=2.8  Score=35.90  Aligned_cols=123  Identities=10%  Similarity=0.056  Sum_probs=73.1

Q ss_pred             HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhh----------c--
Q 036589           13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKH----------D--   80 (176)
Q Consensus        13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~----------~--   80 (176)
                      =..|-..|.+++|+++-+.-  .+        -+   --.+|..-..-+-..++.+.|.+.|++--.          .  
T Consensus       833 NKlyQs~g~w~eA~eiAE~~--DR--------iH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p  899 (1416)
T KOG3617|consen  833 NKLYQSQGMWSEAFEIAETK--DR--------IH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYP  899 (1416)
T ss_pred             HHHHHhcccHHHHHHHHhhc--cc--------ee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhCh
Confidence            34455567888888774433  11        12   234555555666667778887776665221          1  


Q ss_pred             ------CCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCC--------------------CCccHhHHHHHHHHHHh
Q 036589           81 ------TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFN--------------------VQRTVKSLNTLLNALLT  134 (176)
Q Consensus        81 ------~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------------------~~p~~~~~~~ll~~~~~  134 (176)
                            ..-..|...|.-.-..+-..|+++.|+.+|+...+.=                    -.-|....-.|...|..
T Consensus       900 ~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn  979 (1416)
T KOG3617|consen  900 KQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYEN  979 (1416)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhh
Confidence                  0112344555555566667899999998887765310                    01234445567777888


Q ss_pred             cCcHHHHHHHHHHH
Q 036589          135 CGKLDRMKELFISF  148 (176)
Q Consensus       135 ~g~~~~a~~l~~~m  148 (176)
                      .|++.+|...|-+.
T Consensus       980 ~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  980 DGDVVKAVKFFTRA  993 (1416)
T ss_pred             hHHHHHHHHHHHHH
Confidence            88888888777654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.37  E-value=1.4  Score=20.71  Aligned_cols=26  Identities=8%  Similarity=0.004  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHh
Q 036589           53 HYDLIITKLGRAKMFDEMQQILHQLK   78 (176)
Q Consensus        53 ~y~~li~~~~~~g~~~~a~~~~~~m~   78 (176)
                      +|..+..++...|++++|...|++..
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al   28 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRAL   28 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHH
Confidence            34444444555555555555554444

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=88.78  E-value=0.61  Score=20.86  Aligned_cols=24  Identities=29%  Similarity=0.347  Sum_probs=19.9

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcC
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKN   31 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~   31 (176)
                      ....+-..+...|++++|..++++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhC
Confidence            345678899999999999998864

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=88.69  E-value=6.6  Score=30.75  Aligned_cols=89  Identities=13%  Similarity=0.079  Sum_probs=55.9

Q ss_pred             hcCChHHHHHHHHHHhhcCCCCCchHH--HHHHHHHHHhccCHHHHHHHHHhcccCCCCc-cHhHHHHHHHHHHhcCcHH
Q 036589           63 RAKMFDEMQQILHQLKHDTRVIPEEII--FCNVISFYGRARLLEHALQVFDEMPSFNVQR-TVKSLNTLLNALLTCGKLD  139 (176)
Q Consensus        63 ~~g~~~~a~~~~~~m~~~~g~~~~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~  139 (176)
                      -.|+.+.|.+-|+.|...    |....  ...|.-.-.+.|.-+.|.++-+..-+.  .| -...+...+...|..|+++
T Consensus       132 ~eG~~~~Ar~kfeAMl~d----PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd  205 (531)
T COG3898         132 LEGDYEDARKKFEAMLDD----PETRLLGLRGLYLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWD  205 (531)
T ss_pred             hcCchHHHHHHHHHHhcC----hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChH
Confidence            357777777777777754    22222  123333345566666666665554321  22 3456778899999999999


Q ss_pred             HHHHHHHHHHhccccccc
Q 036589          140 RMKELFISFNLKAIAVLD  157 (176)
Q Consensus       140 ~a~~l~~~m~~~~~~~p~  157 (176)
                      .|++|.+.-++..+.+++
T Consensus       206 ~AlkLvd~~~~~~vie~~  223 (531)
T COG3898         206 GALKLVDAQRAAKVIEKD  223 (531)
T ss_pred             HHHHHHHHHHHHHhhchh
Confidence            999999887665443344

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=88.32  E-value=4.9  Score=28.88  Aligned_cols=76  Identities=9%  Similarity=-0.008  Sum_probs=53.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccC--CCCccHhHHHHHHHH
Q 036589           54 YDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF--NVQRTVKSLNTLLNA  131 (176)
Q Consensus        54 y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~ll~~  131 (176)
                      .+.-++.+.+.+.+.++....++-.+..  ..|..+-..+++.||-.|+|++|..-++..-+.  ...+-...|..+|.+
T Consensus         4 l~~t~seLL~~~sL~dai~~a~~qVkak--Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           4 LRDTISELLDDNSLQDAIGLARDQVKAK--PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             hHHHHHHHHHhccHHHHHHHHHHHHhcC--CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            3456777888889999998887777662  345555667889999999999998777765432  223445566666654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=88.12  E-value=1.8  Score=20.34  Aligned_cols=27  Identities=19%  Similarity=0.155  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589          124 SLNTLLNALLTCGKLDRMKELFISFNL  150 (176)
Q Consensus       124 ~~~~ll~~~~~~g~~~~a~~l~~~m~~  150 (176)
                      +|..+-..|...|++++|+..|++..+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            344455555555555555555555443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=87.86  E-value=3.2  Score=28.78  Aligned_cols=52  Identities=10%  Similarity=-0.045  Sum_probs=25.3

Q ss_pred             hcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcc
Q 036589           63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP  114 (176)
Q Consensus        63 ~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  114 (176)
                      ...+.+......+...+.....|+...|..++.++...|+.++|.+..+++.
T Consensus       120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~  171 (193)
T PF11846_consen  120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR  171 (193)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3344444444444433332344555555555555555555555555555544

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=87.79  E-value=4.9  Score=33.52  Aligned_cols=90  Identities=11%  Similarity=0.135  Sum_probs=64.1

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccH-------
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV-------  122 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------  122 (176)
                      +..+.-.+-..+.+...+.-|-++|+.|-..          .++++.-...++|++|..+-+...+.  .||.       
T Consensus       746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqw  813 (1081)
T KOG1538|consen  746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQW  813 (1081)
T ss_pred             hhhHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHH
Confidence            3444555555555667778888888887655          46778888899999999998887754  2443       


Q ss_pred             ----hHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589          123 ----KSLNTLLNALLTCGKLDRMKELFISFNLK  151 (176)
Q Consensus       123 ----~~~~~ll~~~~~~g~~~~a~~l~~~m~~~  151 (176)
                          .-|.--=.+|-+.|+-.+|.++++.+...
T Consensus       814 LAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn  846 (1081)
T KOG1538|consen  814 LAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN  846 (1081)
T ss_pred             hhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence                22445557788888888888888887643

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.17  E-value=11  Score=31.27  Aligned_cols=82  Identities=12%  Similarity=0.058  Sum_probs=41.9

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL  129 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  129 (176)
                      +..-|..|.++..+.+++..|.+.|......          ..|+-.+...|+-+....+=+...+.|      ..|.-.
T Consensus       665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~----------~~LlLl~t~~g~~~~l~~la~~~~~~g------~~N~AF  728 (794)
T KOG0276|consen  665 SEVKWRQLGDAALSAGELPLASECFLRARDL----------GSLLLLYTSSGNAEGLAVLASLAKKQG------KNNLAF  728 (794)
T ss_pred             chHHHHHHHHHHhhcccchhHHHHHHhhcch----------hhhhhhhhhcCChhHHHHHHHHHHhhc------ccchHH
Confidence            3455666666666666666666666655433          233444444444332222222222222      133444


Q ss_pred             HHHHhcCcHHHHHHHHHH
Q 036589          130 NALLTCGKLDRMKELFIS  147 (176)
Q Consensus       130 ~~~~~~g~~~~a~~l~~~  147 (176)
                      -+|...|+++++.+++.+
T Consensus       729 ~~~~l~g~~~~C~~lLi~  746 (794)
T KOG0276|consen  729 LAYFLSGDYEECLELLIS  746 (794)
T ss_pred             HHHHHcCCHHHHHHHHHh
Confidence            556667777777776654

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=87.12  E-value=7  Score=28.11  Aligned_cols=47  Identities=9%  Similarity=0.017  Sum_probs=32.7

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCCchHHHHHHHHH
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHD-TRVIPEEIIFCNVISF   96 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-~g~~~~~~~~~~li~~   96 (176)
                      |.-.-..+++.+|-.|++++|..-++-.-+- ....+...+|..+|.+
T Consensus        34 da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455          34 DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            4445566888899999999998766665533 1245667777777766

>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised

Probab=86.86  E-value=3.1  Score=21.83  Aligned_cols=33  Identities=9%  Similarity=0.046  Sum_probs=19.3

Q ss_pred             HhcCcHHHHHHHHHHHHhccccccchHHHHHHHH
Q 036589          133 LTCGKLDRMKELFISFNLKAIAVLDGLCSNLKII  166 (176)
Q Consensus       133 ~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~  166 (176)
                      -+.|.++++..++++|.+.|+- -+...|+.++.
T Consensus        13 k~~GlI~~~~~~l~~l~~~g~~-is~~l~~~~L~   45 (48)
T PF11848_consen   13 KRRGLISEVKPLLDRLQQAGFR-ISPKLIEEILR   45 (48)
T ss_pred             HHcCChhhHHHHHHHHHHcCcc-cCHHHHHHHHH
Confidence            4455566666666666666665 55555555543

This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.69  E-value=12  Score=28.79  Aligned_cols=108  Identities=10%  Similarity=-0.085  Sum_probs=77.4

Q ss_pred             hcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHH----HHHHHHHhcCcH
Q 036589           63 RAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN----TLLNALLTCGKL  138 (176)
Q Consensus        63 ~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~----~ll~~~~~~g~~  138 (176)
                      ..|.+.+|-..++++.+.  ++-|...++-.=.+|.-.|+.+.-...++++.-.. .++..+|.    .+.-++...|.+
T Consensus       115 ~~g~~h~a~~~wdklL~d--~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y  191 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD--YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIY  191 (491)
T ss_pred             ccccccHHHHHHHHHHHh--CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccc
Confidence            356777777788888876  67788888888899999999999888888887321 24443333    344455678999


Q ss_pred             HHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589          139 DRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       139 ~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      ++|++.-++..+-+..  |...--+....+-..||++
T Consensus       192 ~dAEk~A~ralqiN~~--D~Wa~Ha~aHVlem~~r~K  226 (491)
T KOG2610|consen  192 DDAEKQADRALQINRF--DCWASHAKAHVLEMNGRHK  226 (491)
T ss_pred             hhHHHHHHhhccCCCc--chHHHHHHHHHHHhcchhh
Confidence            9999999888776553  6666666666665566554

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=86.44  E-value=7.9  Score=26.20  Aligned_cols=57  Identities=16%  Similarity=0.137  Sum_probs=41.1

Q ss_pred             HHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH-HHHHhcCcHHHHHHHHHHHHhcc
Q 036589           94 ISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL-NALLTCGKLDRMKELFISFNLKA  152 (176)
Q Consensus        94 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~g~~~~a~~l~~~m~~~~  152 (176)
                      +..-.+.++.+++..+++.+.-.  .|.....-.+- -.+.++|++.+|.++|+++.+..
T Consensus        17 ~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~   74 (160)
T PF09613_consen   17 LSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA   74 (160)
T ss_pred             HHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence            34445678899999999988754  36554444333 34578999999999999987653

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=86.39  E-value=3.1  Score=21.44  Aligned_cols=23  Identities=22%  Similarity=0.203  Sum_probs=13.7

Q ss_pred             HHHHHHhccCHHHHHHHHHhccc
Q 036589           93 VISFYGRARLLEHALQVFDEMPS  115 (176)
Q Consensus        93 li~~~~~~g~~~~a~~~~~~m~~  115 (176)
                      |..+|.+.|+.+.|.+++++..+
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHH
Confidence            45556666666666666665554

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=86.32  E-value=2.3  Score=19.75  Aligned_cols=25  Identities=4%  Similarity=0.037  Sum_probs=11.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHh
Q 036589           54 YDLIITKLGRAKMFDEMQQILHQLK   78 (176)
Q Consensus        54 y~~li~~~~~~g~~~~a~~~~~~m~   78 (176)
                      |..+..++.+.|++++|.+.|++..
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al   28 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKAL   28 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3344445555555555555555444

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK10564 maltose regulon periplasmic protein; Provisional

Probab=86.07  E-value=2.4  Score=31.70  Aligned_cols=44  Identities=11%  Similarity=0.068  Sum_probs=31.0

Q ss_pred             CCccHhH-HHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHH
Q 036589          118 VQRTVKS-LNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSN  162 (176)
Q Consensus       118 ~~p~~~~-~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~  162 (176)
                      +.|++.+ ||.-|....+.||+++|+.|++|....|+. --..||-
T Consensus       252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~-~Ar~tFi  296 (303)
T PRK10564        252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGST-SARSTFI  296 (303)
T ss_pred             cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-hHHHHHH
Confidence            3344444 568888888888888888888888888887 4444443

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=85.72  E-value=10  Score=26.72  Aligned_cols=74  Identities=9%  Similarity=-0.056  Sum_probs=36.6

Q ss_pred             hccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc---cccccchHHHHHHHHHhhccccCC
Q 036589           99 RARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLK---AIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus        99 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~---~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      +.|+ ++|.+.|-.+...+..-++...-.|...|. ..+.+++..++....+.   +-. +|+..+..|...|-+.|+++
T Consensus       119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~-~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDN-FNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCC-CCHHHHHHHHHHHHHhcchh
Confidence            3343 345555555554443434444444444443 45555666665554431   223 55666666666666655543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.49  E-value=15  Score=31.53  Aligned_cols=56  Identities=13%  Similarity=0.172  Sum_probs=34.4

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcc
Q 036589           57 IITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP  114 (176)
Q Consensus        57 li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  114 (176)
                      +|.-|-.+.++.+.-..++.+.+. |+. +...-+.|+.+|.+.++.++-.++.+.-.
T Consensus       403 Vi~kfLdaq~IknLt~YLe~L~~~-gla-~~dhttlLLncYiKlkd~~kL~efI~~~~  458 (933)
T KOG2114|consen  403 VIKKFLDAQRIKNLTSYLEALHKK-GLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD  458 (933)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHc-ccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence            455555555566666666666666 543 33333558888888888776666655544

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=85.26  E-value=5.3  Score=28.99  Aligned_cols=78  Identities=10%  Similarity=0.071  Sum_probs=53.3

Q ss_pred             HHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcc----cCC-CCccHhHHHHHHHHHHhcCcHHHHHH
Q 036589           69 EMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP----SFN-VQRTVKSLNTLLNALLTCGKLDRMKE  143 (176)
Q Consensus        69 ~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~  143 (176)
                      .|...|+.....   .--...--.+..-|.+.|++++|.++|+.+.    +.| ..+...+...++.++.+.|+.+....
T Consensus       163 ~A~~~f~~~~~~---R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~  239 (247)
T PF11817_consen  163 KAYEQFKKYGQN---RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLT  239 (247)
T ss_pred             HHHHHHHHhccc---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            444444444332   2233344457788889999999999998874    233 45667778888888889999988887


Q ss_pred             HHHHHH
Q 036589          144 LFISFN  149 (176)
Q Consensus       144 l~~~m~  149 (176)
                      +.-+|.
T Consensus       240 ~~leLl  245 (247)
T PF11817_consen  240 TSLELL  245 (247)
T ss_pred             HHHHHh
Confidence            766654

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF13934 ELYS: Nuclear pore complex assembly

Probab=84.82  E-value=12  Score=26.81  Aligned_cols=104  Identities=14%  Similarity=0.058  Sum_probs=55.5

Q ss_pred             HHHHHHHHHh--ccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589            9 PFRLASLLHL--QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus         9 ~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~   86 (176)
                      +...+++|..  .+++++|++.+..-             ...|+-..  .++.++...|+.+.|.++++.+... .-  +
T Consensus        79 ~~~~~~g~W~LD~~~~~~A~~~L~~p-------------s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p~-l~--s  140 (226)
T PF13934_consen   79 YIKFIQGFWLLDHGDFEEALELLSHP-------------SLIPWFPD--KILQALLRRGDPKLALRYLRAVGPP-LS--S  140 (226)
T ss_pred             HHHHHHHHHHhChHhHHHHHHHhCCC-------------CCCcccHH--HHHHHHHHCCChhHHHHHHHhcCCC-CC--C
Confidence            3444555554  35566666666443             12222222  3667777777777777777776543 22  2


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHh
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLT  134 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  134 (176)
                      ......++.. ..++.+.+|..+-+...+.   -....+..++..+..
T Consensus       141 ~~~~~~~~~~-La~~~v~EAf~~~R~~~~~---~~~~l~e~l~~~~~~  184 (226)
T PF13934_consen  141 PEALTLYFVA-LANGLVTEAFSFQRSYPDE---LRRRLFEQLLEHCLE  184 (226)
T ss_pred             HHHHHHHHHH-HHcCCHHHHHHHHHhCchh---hhHHHHHHHHHHHHH
Confidence            2222322333 5567777777777766641   113456666655553

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=84.42  E-value=9.7  Score=25.33  Aligned_cols=88  Identities=16%  Similarity=0.167  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhcCC----CCCchHHHHHHHHHHHhccC-HHHHHHHHHhcccCCCCccHhHHH
Q 036589           52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTR----VIPEEIIFCNVISFYGRARL-LEHALQVFDEMPSFNVQRTVKSLN  126 (176)
Q Consensus        52 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g----~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~  126 (176)
                      ...|.++.-....+.+.....+++.+..-.+    -..+...|.+++.+.+.... --.+..+|.-|++.+.+++..-|.
T Consensus        40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~  119 (145)
T PF13762_consen   40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS  119 (145)
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            3567788888888889999888888854311    13566789999999988777 567888999999888899999999


Q ss_pred             HHHHHHHhcCcHH
Q 036589          127 TLLNALLTCGKLD  139 (176)
Q Consensus       127 ~ll~~~~~~g~~~  139 (176)
                      .+|.++.+....+
T Consensus       120 ~li~~~l~g~~~~  132 (145)
T PF13762_consen  120 CLIKAALRGYFHD  132 (145)
T ss_pred             HHHHHHHcCCCCc
Confidence            9999988864444

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.30  E-value=8.7  Score=33.24  Aligned_cols=120  Identities=17%  Similarity=0.107  Sum_probs=79.6

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCCh--HHHHHHHHHHhhcCCCC
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMF--DEMQQILHQLKHDTRVI   84 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~--~~a~~~~~~m~~~~g~~   84 (176)
                      --|..|+..|...|++++|+++|.+...+..     ...+..  ...+-.++..+.+.+..  +-..+.-++.... ...
T Consensus       505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~-----~~d~~~--~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~-~p~  576 (877)
T KOG2063|consen  505 KKYRELIELYATKGMHEKALQLLRDLVDEDS-----DTDSFQ--LDGLEKIIEYLKKLGAENLDLILEYADWVLNK-NPE  576 (877)
T ss_pred             ccHHHHHHHHHhccchHHHHHHHHHHhcccc-----ccccch--hhhHHHHHHHHHHhcccchhHHHHHhhhhhcc-Cch
Confidence            3578899999999999999999999833210     012222  22344477777777665  6666666666655 222


Q ss_pred             CchHHHHH------------HHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHh
Q 036589           85 PEEIIFCN------------VISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLT  134 (176)
Q Consensus        85 ~~~~~~~~------------li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  134 (176)
                      .....|+.            .+-.|.+....+-++..++.+....-.++....|.++..|+.
T Consensus       577 ~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e  638 (877)
T KOG2063|consen  577 AGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE  638 (877)
T ss_pred             hheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence            22222222            344556777788889999988876667788888998888875

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=84.29  E-value=3.7  Score=21.17  Aligned_cols=24  Identities=4%  Similarity=0.149  Sum_probs=22.0

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhc
Q 036589           57 IITKLGRAKMFDEMQQILHQLKHD   80 (176)
Q Consensus        57 li~~~~~~g~~~~a~~~~~~m~~~   80 (176)
                      +..+|.+.|+.+.|..+++++...
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHc
Confidence            678999999999999999999966

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=84.29  E-value=17  Score=28.10  Aligned_cols=136  Identities=9%  Similarity=-0.014  Sum_probs=90.0

Q ss_pred             HHHHhccChhHHHHhhcCCCCCCCCCCCC---CCCCCCCcHHHHH--HHHHHHHhcCChHHHHHHHHHHhhcCCCCCchH
Q 036589           14 SLLHLQKHPKLALQLFKNPNPNANDTEAP---PLKPFRYNLLHYD--LIITKLGRAKMFDEMQQILHQLKHDTRVIPEEI   88 (176)
Q Consensus        14 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~~~~~y~--~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~   88 (176)
                      ..+.+.|.+++|..=|+.. .....+++.   ....+.+....|+  ..+..+...|+...|......+.+-  ..=|..
T Consensus       114 ~vllK~Gele~A~~DF~~v-l~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~  190 (504)
T KOG0624|consen  114 VVLLKQGELEQAEADFDQV-LQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDAS  190 (504)
T ss_pred             hhhhhcccHHHHHHHHHHH-HhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--CcchhH
Confidence            3567899999999999987 333211110   0000111111222  2234455678999999999998865  344777


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q 036589           89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI  153 (176)
Q Consensus        89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~  153 (176)
                      .|..-..+|...|++..|+.=++..-... .-|+..+--+-..+-..|+.+.++...++..+.+.
T Consensus       191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldp  254 (504)
T KOG0624|consen  191 LRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDP  254 (504)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCc
Confidence            88888999999999999988777655332 34566666677777788888888888888766543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=84.11  E-value=13  Score=31.48  Aligned_cols=68  Identities=12%  Similarity=0.036  Sum_probs=41.6

Q ss_pred             CCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHH-------HHHhcCChHHHHHHHH
Q 036589            3 KAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIIT-------KLGRAKMFDEMQQILH   75 (176)
Q Consensus         3 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~-------~~~~~g~~~~a~~~~~   75 (176)
                      .|.|..|..|..+-...-.++.|...|-+. ..-        +|++. +.-..++.+       .-+--|+|++|+++|-
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc-~dY--------~Gik~-vkrl~~i~s~~~q~aei~~~~g~feeaek~yl  758 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRC-GDY--------AGIKL-VKRLRTIHSKEQQRAEISAFYGEFEEAEKLYL  758 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhh-ccc--------cchhH-HHHhhhhhhHHHHhHhHhhhhcchhHhhhhhh
Confidence            477778888888777777888888888776 332        23321 011111110       1112488999999888


Q ss_pred             HHhhc
Q 036589           76 QLKHD   80 (176)
Q Consensus        76 ~m~~~   80 (176)
                      ++-++
T Consensus       759 d~drr  763 (1189)
T KOG2041|consen  759 DADRR  763 (1189)
T ss_pred             ccchh
Confidence            88776

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=84.08  E-value=3.1  Score=19.36  Aligned_cols=26  Identities=8%  Similarity=0.048  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHh
Q 036589           53 HYDLIITKLGRAKMFDEMQQILHQLK   78 (176)
Q Consensus        53 ~y~~li~~~~~~g~~~~a~~~~~~m~   78 (176)
                      +|..+...|...|++++|...|++..
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~   28 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKAL   28 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34445555555555555555555544

...

>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF

Probab=83.78  E-value=1.4  Score=28.81  Aligned_cols=34  Identities=12%  Similarity=-0.001  Sum_probs=24.0

Q ss_pred             HHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHh
Q 036589          132 LLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMN  168 (176)
Q Consensus       132 ~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~  168 (176)
                      +.+.|.-..|..+|++|++.|-+ ||  .|+.|+...
T Consensus       105 lR~ygsk~DaY~VF~kML~~G~p-Pd--dW~~Ll~~a  138 (140)
T PF11663_consen  105 LRAYGSKTDAYAVFRKMLERGNP-PD--DWDALLKEA  138 (140)
T ss_pred             hhhhccCCcHHHHHHHHHhCCCC-Cc--cHHHHHHHh
Confidence            34456666788888888888888 87  466666543

The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=83.76  E-value=1.6  Score=20.95  Aligned_cols=22  Identities=14%  Similarity=0.105  Sum_probs=18.6

Q ss_pred             cHHHHHHHHHHHHhcCChHHHH
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQ   71 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~   71 (176)
                      +...|+.+...|...|++++|+
T Consensus        12 n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   12 NAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CHHHHHHHHHHHHHCcCHHhhc
Confidence            7788888888888888888875

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=83.75  E-value=16  Score=27.41  Aligned_cols=89  Identities=16%  Similarity=0.246  Sum_probs=61.3

Q ss_pred             hHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHh--ccC----HHHHHHHHHhcccCC---CCccHhHHHHHHHHHHhcCc
Q 036589           67 FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR--ARL----LEHALQVFDEMPSFN---VQRTVKSLNTLLNALLTCGK  137 (176)
Q Consensus        67 ~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~--~g~----~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~~g~  137 (176)
                      +++...+++.|++. |++-+..+|-+.......  ..+    ...|..+|+.|++..   ..++-.++..||..  ..++
T Consensus        78 ~~~~~~~y~~L~~~-gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~  154 (297)
T PF13170_consen   78 FKEVLDIYEKLKEA-GFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED  154 (297)
T ss_pred             HHHHHHHHHHHHHh-ccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence            56677899999999 999998888663333322  222    567889999999643   23455667777655  3333


Q ss_pred             ----HHHHHHHHHHHHhccccccch
Q 036589          138 ----LDRMKELFISFNLKAIAVLDG  158 (176)
Q Consensus       138 ----~~~a~~l~~~m~~~~~~~p~~  158 (176)
                          .++++.+|+.+.+.|+.+-|.
T Consensus       155 ~e~l~~~~E~~Y~~L~~~~f~kgn~  179 (297)
T PF13170_consen  155 VEELAERMEQCYQKLADAGFKKGND  179 (297)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcH
Confidence                467888899998888863333

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=83.71  E-value=18  Score=30.69  Aligned_cols=13  Identities=15%  Similarity=0.118  Sum_probs=7.4

Q ss_pred             cChhHHHHhhcCC
Q 036589           20 KHPKLALQLFKNP   32 (176)
Q Consensus        20 ~~~~~A~~~~~~~   32 (176)
                      |++++|.+++-++
T Consensus       748 g~feeaek~yld~  760 (1189)
T KOG2041|consen  748 GEFEEAEKLYLDA  760 (1189)
T ss_pred             cchhHhhhhhhcc
Confidence            4555565555555

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.49  E-value=26  Score=30.26  Aligned_cols=117  Identities=15%  Similarity=0.119  Sum_probs=81.4

Q ss_pred             HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHH----HHHhcCChHHHHHHHHHHhhcCCCC
Q 036589            9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIIT----KLGRAKMFDEMQQILHQLKHDTRVI   84 (176)
Q Consensus         9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~----~~~~~g~~~~a~~~~~~m~~~~g~~   84 (176)
                      .-.-++.+.+...+.-|+.+-+.- ..              +......+..    .+-+.|++++|...|-+-...  ++
T Consensus       337 le~kL~iL~kK~ly~~Ai~LAk~~-~~--------------d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le  399 (933)
T KOG2114|consen  337 LETKLDILFKKNLYKVAINLAKSQ-HL--------------DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LE  399 (933)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhc-CC--------------CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CC
Confidence            344566677777778888775554 11              3344333444    444789999999888776643  34


Q ss_pred             CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 036589           85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF  148 (176)
Q Consensus        85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m  148 (176)
                      |     ..+|.-|.++.++.+-..+++.+.+.|+. +...-+.||++|.+.++.++-.++.+.-
T Consensus       400 ~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~  457 (933)
T KOG2114|consen  400 P-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKC  457 (933)
T ss_pred             h-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcC
Confidence            4     34677777888888888899999888854 7777889999999999877766555443

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=83.48  E-value=12  Score=25.58  Aligned_cols=92  Identities=21%  Similarity=0.242  Sum_probs=56.7

Q ss_pred             CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHH
Q 036589           46 PFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL  125 (176)
Q Consensus        46 ~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  125 (176)
                      +++|+...|..+|+.+.+.|++.....    +.+. ++-+|.......+-.+..  ....+.++=-+|..    .=...+
T Consensus        24 ~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~-~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLk----RL~~~~   92 (167)
T PF07035_consen   24 NIPVQHELYELLIDLLIRNGQFSQLHQ----LLQY-HVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLK----RLGTAY   92 (167)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhh-cccCCcHHHHHHHHHhHc--cChHHHHHHHHHHH----HhhhhH
Confidence            567888999999999999999776644    4444 555666555544433222  22333333333331    111245


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHH
Q 036589          126 NTLLNALLTCGKLDRMKELFISF  148 (176)
Q Consensus       126 ~~ll~~~~~~g~~~~a~~l~~~m  148 (176)
                      ..++..+...|++-+|.++.+..
T Consensus        93 ~~iievLL~~g~vl~ALr~ar~~  115 (167)
T PF07035_consen   93 EEIIEVLLSKGQVLEALRYARQY  115 (167)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHc
Confidence            66777777888888888777664

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=83.30  E-value=21  Score=28.46  Aligned_cols=118  Identities=12%  Similarity=0.045  Sum_probs=69.7

Q ss_pred             HHHHHhccChhHHHHhhc--CCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc----------
Q 036589           13 ASLLHLQKHPKLALQLFK--NPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD----------   80 (176)
Q Consensus        13 ~~~~~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----------   80 (176)
                      .....-.++++++.++.+  ++ -          +.+  .....+.++..+-+.|..+.|..+-++-..+          
T Consensus       268 fk~av~~~d~~~v~~~i~~~~l-l----------~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L  334 (443)
T PF04053_consen  268 FKTAVLRGDFEEVLRMIAASNL-L----------PNI--PKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNL  334 (443)
T ss_dssp             HHHHHHTT-HHH-----HHHHT-G----------GG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-H
T ss_pred             HHHHHHcCChhhhhhhhhhhhh-c----------ccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCH
Confidence            344555788888655554  22 0          111  2455788899999999999988865443322          


Q ss_pred             ------CCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q 036589           81 ------TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA  152 (176)
Q Consensus        81 ------~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~  152 (176)
                            ..-..+...|..|-+...+.|+++-|++.|.+..+         |..|+-.|.-.|+.++..++-+.....|
T Consensus       335 ~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~  403 (443)
T PF04053_consen  335 DIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG  403 (443)
T ss_dssp             HHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence                  12334667888888888888888888888887764         5566666666677666666655554443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=83.18  E-value=13  Score=27.02  Aligned_cols=71  Identities=13%  Similarity=-0.006  Sum_probs=51.1

Q ss_pred             HHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHH----hccccccchHHHHHHHHHhhccccCC
Q 036589          103 LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN----LKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       103 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~----~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      +..|.+.|+...+.  .--...---|-.-|.+.|++++|.++|+.+.    +.|+..+...+-..+..++.+.|+.+
T Consensus       161 L~~A~~~f~~~~~~--R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~  235 (247)
T PF11817_consen  161 LEKAYEQFKKYGQN--RMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVE  235 (247)
T ss_pred             HHHHHHHHHHhccc--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHH
Confidence            56777777766642  2333444467788999999999999999884    35665467777788888888877754

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=82.91  E-value=3.3  Score=18.94  Aligned_cols=23  Identities=13%  Similarity=0.122  Sum_probs=11.1

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhc
Q 036589           58 ITKLGRAKMFDEMQQILHQLKHD   80 (176)
Q Consensus        58 i~~~~~~g~~~~a~~~~~~m~~~   80 (176)
                      ..++.+.|++++|.+.|+++.+.
T Consensus         7 a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    7 ARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHH
Confidence            34444445555555555554443

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=82.56  E-value=5.7  Score=24.71  Aligned_cols=86  Identities=13%  Similarity=-0.034  Sum_probs=46.2

Q ss_pred             hHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHH
Q 036589           67 FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI  146 (176)
Q Consensus        67 ~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~  146 (176)
                      .++|.-|=+.+... +-. ....--+-+..+...|++++|..+.+.+-    .||...|-+|-.  .+.|..+++..-+.
T Consensus        21 HqEA~tIAdwL~~~-~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~   92 (115)
T TIGR02508        21 HQEANTIADWLHLK-GES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLN   92 (115)
T ss_pred             HHHHHHHHHHHhcC-Cch-HHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHH
Confidence            45566666665544 211 22222222334445677777777766663    577766665533  35566666666666


Q ss_pred             HHHhccccccchHHHH
Q 036589          147 SFNLKAIAVLDGLCSN  162 (176)
Q Consensus       147 ~m~~~~~~~p~~~t~~  162 (176)
                      +|...|-  |....|.
T Consensus        93 rla~sg~--p~lq~Fa  106 (115)
T TIGR02508        93 RLAASGD--PRLQTFV  106 (115)
T ss_pred             HHHhCCC--HHHHHHH
Confidence            6666555  3444443

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []

Probab=82.33  E-value=6.6  Score=24.88  Aligned_cols=35  Identities=14%  Similarity=0.152  Sum_probs=25.3

Q ss_pred             hHHHHHHHHHHhhcCCCCC-chHHHHHHHHHHHhcc
Q 036589           67 FDEMQQILHQLKHDTRVIP-EEIIFCNVISFYGRAR  101 (176)
Q Consensus        67 ~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g  101 (176)
                      -+++.+.+.++++..|+.| |+..--++...+..-.
T Consensus         5 S~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~SL~~~~   40 (113)
T PF08870_consen    5 SKKAKEQLKKLKRRTGITPWNILCRIAFCRSLEEPS   40 (113)
T ss_pred             CHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHccCC
Confidence            3578889999998889999 7776666655554433

The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=82.03  E-value=8.2  Score=26.71  Aligned_cols=54  Identities=7%  Similarity=-0.090  Sum_probs=39.0

Q ss_pred             hccCHHHHHHHHHhcc-cCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q 036589           99 RARLLEHALQVFDEMP-SFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA  152 (176)
Q Consensus        99 ~~g~~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~  152 (176)
                      ..++.+......+... -....|+...|..++..+...|+.++|.++.+++...-
T Consensus       120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ly  174 (193)
T PF11846_consen  120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLY  174 (193)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            4455444443333332 12336999999999999999999999999999987653

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=81.53  E-value=23  Score=27.49  Aligned_cols=55  Identities=5%  Similarity=-0.167  Sum_probs=32.8

Q ss_pred             HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 036589           13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLK   78 (176)
Q Consensus        13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~   78 (176)
                      +..+.-.|+...|+.++..+ .+          --+.|...|-.=..+|...|++..|..=++...
T Consensus       162 l~s~~~~GD~~~ai~~i~~l-lE----------i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~as  216 (504)
T KOG0624|consen  162 LKSASGSGDCQNAIEMITHL-LE----------IQPWDASLRQARAKCYIAEGEPKKAIHDLKQAS  216 (504)
T ss_pred             HHHHhcCCchhhHHHHHHHH-Hh----------cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            34444567777777777776 22          123356666666667777777766665444433

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=81.28  E-value=19  Score=26.39  Aligned_cols=75  Identities=13%  Similarity=0.098  Sum_probs=44.7

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhcCCCCC-chHHHHHHHHHHHhccCHHHHHHHHHhcccC-CCCccHhHHHHHHHHHH
Q 036589           58 ITKLGRAKMFDEMQQILHQLKHDTRVIP-EEIIFCNVISFYGRARLLEHALQVFDEMPSF-NVQRTVKSLNTLLNALL  133 (176)
Q Consensus        58 i~~~~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~  133 (176)
                      +..-.+.|++++|.+.|+.+.......| ...+.-.++.++-+.+++++|+..+++..+. +-.|| .-|-..|.+++
T Consensus        41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n-~dY~~YlkgLs  117 (254)
T COG4105          41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN-ADYAYYLKGLS  117 (254)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC-hhHHHHHHHHH
Confidence            3344566777777777777776532222 2344445667777777777777777776643 22333 33555555555

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=81.17  E-value=14  Score=24.78  Aligned_cols=52  Identities=21%  Similarity=0.187  Sum_probs=37.9

Q ss_pred             hccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036589           18 LQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD   80 (176)
Q Consensus        18 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~   80 (176)
                      +.++++++..+++.| .--        .+-.+...++...+  +...|++++|.++|.++.+.
T Consensus        22 ~~~d~~D~e~lLdAL-rvL--------rP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561        22 RSADPYDAQAMLDAL-RVL--------RPNLKELDMFDGWL--LIARGNYDEAARILRELLSS   73 (153)
T ss_pred             hcCCHHHHHHHHHHH-HHh--------CCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence            378888888888887 221        23334555665554  47899999999999999988

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF13934 ELYS: Nuclear pore complex assembly

Probab=80.95  E-value=18  Score=25.96  Aligned_cols=104  Identities=16%  Similarity=0.064  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHh--cCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHH
Q 036589           53 HYDLIITKLGR--AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLN  130 (176)
Q Consensus        53 ~y~~li~~~~~--~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~  130 (176)
                      .|-..++++.-  ++++++|.+.+   ... .+.|+...  -++.++.+.|+...|.++++.+.-..  .+....+.++.
T Consensus        78 ~~~~~~~g~W~LD~~~~~~A~~~L---~~p-s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~p~l--~s~~~~~~~~~  149 (226)
T PF13934_consen   78 KYIKFIQGFWLLDHGDFEEALELL---SHP-SLIPWFPD--KILQALLRRGDPKLALRYLRAVGPPL--SSPEALTLYFV  149 (226)
T ss_pred             HHHHHHHHHHHhChHhHHHHHHHh---CCC-CCCcccHH--HHHHHHHHCCChhHHHHHHHhcCCCC--CCHHHHHHHHH
Confidence            46667888875  45677776666   222 23333332  37888888999999999999877221  12222334444


Q ss_pred             HHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhh
Q 036589          131 ALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMND  169 (176)
Q Consensus       131 ~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~  169 (176)
                      . ..++.+.+|..+-+...+.    -....+..++..+.
T Consensus       150 ~-La~~~v~EAf~~~R~~~~~----~~~~l~e~l~~~~~  183 (226)
T PF13934_consen  150 A-LANGLVTEAFSFQRSYPDE----LRRRLFEQLLEHCL  183 (226)
T ss_pred             H-HHcCCHHHHHHHHHhCchh----hhHHHHHHHHHHHH
Confidence            4 6678999998887776552    12345555555555

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=80.88  E-value=26  Score=33.82  Aligned_cols=122  Identities=15%  Similarity=0.070  Sum_probs=81.5

Q ss_pred             HHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHH
Q 036589           11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIF   90 (176)
Q Consensus        11 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~   90 (176)
                      .+..+-.+++.+.+|+..|+.-....        +.-.-...-|-.+...|+..++++.+..+...-...    |  .. 
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~e--------k~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~----~--sl- 1452 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTE--------KEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD----P--SL- 1452 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcccc--------chhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC----c--cH-
Confidence            34456778899999999999831111        111223445555666999999999998887753322    1  12 


Q ss_pred             HHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 036589           91 CNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF  148 (176)
Q Consensus        91 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m  148 (176)
                      ..-|.-....|+|..|...|+.+.+.+ ++...+++-+++.-...|.++.+.-..+..
T Consensus      1453 ~~qil~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~ 1509 (2382)
T KOG0890|consen 1453 YQQILEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGL 1509 (2382)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcch
Confidence            234445567899999999999999765 333777887777777777777666544443

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=80.69  E-value=13  Score=24.22  Aligned_cols=45  Identities=7%  Similarity=0.125  Sum_probs=31.3

Q ss_pred             HHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589          106 ALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL  150 (176)
Q Consensus       106 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~  150 (176)
                      ..+.+..+....+.|++.....-|.++.+.+++..|.++|+-.+.
T Consensus        68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~  112 (149)
T KOG4077|consen   68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD  112 (149)
T ss_pred             HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            334455555666677777777777777777777777777777653

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.69  E-value=10  Score=32.08  Aligned_cols=87  Identities=10%  Similarity=-0.075  Sum_probs=52.9

Q ss_pred             HhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccc
Q 036589           77 LKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVL  156 (176)
Q Consensus        77 m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p  156 (176)
                      +....|.....-+.+--+.-+...|+..+|.++=++.+    .||-..|..=+.+++..+++++-+++-+.++. .    
T Consensus       674 Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks-P----  744 (829)
T KOG2280|consen  674 LEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS-P----  744 (829)
T ss_pred             HHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-C----
Confidence            33333444555555566666677777777777777776    57777777777777777777776666555432 1    


Q ss_pred             chHHHHHHHHHhhccccC
Q 036589          157 DGLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       157 ~~~t~~~li~~~~~~g~~  174 (176)
                        .-|.-.+.+|.++|+.
T Consensus       745 --IGy~PFVe~c~~~~n~  760 (829)
T KOG2280|consen  745 --IGYLPFVEACLKQGNK  760 (829)
T ss_pred             --CCchhHHHHHHhcccH
Confidence              1244445555555544

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=80.66  E-value=20  Score=26.43  Aligned_cols=100  Identities=9%  Similarity=0.032  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHhcCCh---HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHH
Q 036589           52 LHYDLIITKLGRAKMF---DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTL  128 (176)
Q Consensus        52 ~~y~~li~~~~~~g~~---~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  128 (176)
                      .+...++.+|...+..   ++|..+++.+....|-+|....  --++.+.+.++.+.+.+.+..|...- ......|..+
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~--L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~  161 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFL--LKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSI  161 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHH--HHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHH
Confidence            4566677777777665   4566777778766444444443  33556666899999999999998542 2244556666


Q ss_pred             HHHHHh--cCcHHHHHHHHHHHHhcccc
Q 036589          129 LNALLT--CGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus       129 l~~~~~--~g~~~~a~~l~~~m~~~~~~  154 (176)
                      +..+..  ......|...+..+....+.
T Consensus       162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~  189 (278)
T PF08631_consen  162 LHHIKQLAEKSPELAAFCLDYLLLNRFK  189 (278)
T ss_pred             HHHHHHHHhhCcHHHHHHHHHHHHHHhC
Confidence            666632  23345566666666544444

It is also involved in sporulation [].

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=80.48  E-value=21  Score=26.39  Aligned_cols=127  Identities=14%  Similarity=0.151  Sum_probs=77.8

Q ss_pred             HHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHH------HHHHHHHHHHhcCChHHHHHHHHHHhhc-------CC
Q 036589           16 LHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLL------HYDLIITKLGRAKMFDEMQQILHQLKHD-------TR   82 (176)
Q Consensus        16 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~------~y~~li~~~~~~g~~~~a~~~~~~m~~~-------~g   82 (176)
                      -.+.|+.+.|..++.+. +...       ....|+..      .|+.-...+.+..+++.|...+++..+-       ..
T Consensus         3 A~~~~~~~~A~~~~~K~-~~~~-------~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~   74 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKA-KDLL-------NSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDK   74 (278)
T ss_pred             chhhCCHHHHHHHHHHh-hhHH-------hcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccc
Confidence            35789999999999998 3321       13334333      3444344444432777776655553322       01


Q ss_pred             CCCc-----hHHHHHHHHHHHhccCH---HHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589           83 VIPE-----EIIFCNVISFYGRARLL---EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLK  151 (176)
Q Consensus        83 ~~~~-----~~~~~~li~~~~~~g~~---~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~  151 (176)
                      ..|+     ..+...++.+|...+..   ++|.++++.+.+.. .-.+..+-.-|..+.+.++.+++.+.+.+|...
T Consensus        75 ~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen   75 LSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence            2222     24556678888887774   56677777775322 122455556667777789999999999999875

It is also involved in sporulation [].

>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]

Probab=80.48  E-value=14  Score=31.14  Aligned_cols=76  Identities=12%  Similarity=-0.006  Sum_probs=37.0

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhcC-CCCCchHHHHHHHHHHHhccCHH------HHHHHHHhcccCCCCccHhHHHHH
Q 036589           56 LIITKLGRAKMFDEMQQILHQLKHDT-RVIPEEIIFCNVISFYGRARLLE------HALQVFDEMPSFNVQRTVKSLNTL  128 (176)
Q Consensus        56 ~li~~~~~~g~~~~a~~~~~~m~~~~-g~~~~~~~~~~li~~~~~~g~~~------~a~~~~~~m~~~~~~p~~~~~~~l  128 (176)
                      .++.+|...|++-++.++++.+.... |-+.=...+|.-|+-..+.|.++      .|-+.+++   ..+.-|..||..|
T Consensus        33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~---a~ln~d~~t~all  109 (1117)
T COG5108          33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQ---ARLNGDSLTYALL  109 (1117)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHH---hhcCCcchHHHHH
Confidence            46666666666666666666555331 22223334455555555555532      22222222   2234455566555


Q ss_pred             HHHHHh
Q 036589          129 LNALLT  134 (176)
Q Consensus       129 l~~~~~  134 (176)
                      +.+-..
T Consensus       110 ~~~sln  115 (1117)
T COG5108         110 CQASLN  115 (1117)
T ss_pred             HHhhcC
Confidence            555444

>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes

Probab=80.48  E-value=4.8  Score=22.72  Aligned_cols=51  Identities=8%  Similarity=0.118  Sum_probs=29.2

Q ss_pred             CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhc
Q 036589           84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTC  135 (176)
Q Consensus        84 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  135 (176)
                      .|....++.++..+++---+++++..+.+..+.|. .+..+|---++.+++.
T Consensus         5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaRe   55 (65)
T PF09454_consen    5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLARE   55 (65)
T ss_dssp             E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence            45556666666666666666666666666666553 3444555444555443

ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.

>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF

Probab=80.18  E-value=1.5  Score=28.70  Aligned_cols=35  Identities=17%  Similarity=0.087  Sum_probs=27.2

Q ss_pred             HHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHH
Q 036589           96 FYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL  132 (176)
Q Consensus        96 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~  132 (176)
                      ...+.|.-.+|..+|+.|++.|-+||  .|+.|+...
T Consensus       104 tlR~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a  138 (140)
T PF11663_consen  104 TLRAYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA  138 (140)
T ss_pred             chhhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence            33455777889999999999998887  477777654

The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].

>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE

Probab=80.12  E-value=10  Score=23.72  Aligned_cols=91  Identities=12%  Similarity=0.017  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHhhcCCCCC-chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHH
Q 036589           68 DEMQQILHQLKHDTRVIP-EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFI  146 (176)
Q Consensus        68 ~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~  146 (176)
                      ++|...+.++++..|+.| |+.+--++...+..-..+....    .-...|+..|-.||.         |+++.....+-
T Consensus         5 ~~a~~~L~~Lk~~Tgi~~~NilcR~A~~~SL~~~~~~~~~~----~~~d~~~E~~~~T~~---------Ge~~~i~~alL   71 (105)
T TIGR03184         5 QTAKDQLRRLKRRTGLTPWNILCRWAFCLSLEEGSTPGVAD----IKLDGNVEIDWYTFA---------GEYGDIYLALL   71 (105)
T ss_pred             HHHHHHHHHHhcccCCCcchHHHHHHHHHHHhcCCCCCccc----cCCCCCeEEEeeeec---------CchHHHHHHHH
Confidence            578899999999989999 6666555544443322222110    001233334444433         66665555444


Q ss_pred             HHH--hccccccchHHHHHHHHHhhccc
Q 036589          147 SFN--LKAIAVLDGLCSNLKIIMNDSQV  172 (176)
Q Consensus       147 ~m~--~~~~~~p~~~t~~~li~~~~~~g  172 (176)
                      ...  ..++. +|...+...+.++...|
T Consensus        72 kq~~~~~~~~-~d~e~l~~~~~lHl~rG   98 (105)
T TIGR03184        72 KQRCVADGPE-LDDESLAKALNLHVHRG   98 (105)
T ss_pred             HHHHHccCCC-CCHHHHHHHHHHHHHHH
Confidence            433  45666 77777777776665443

This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	176
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	6e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 38.6 bits (88), Expect = 6e-04
 Identities = 19/154 (12%), Positives = 42/154 (27%), Gaps = 7/154 (4%)

Query: 23  KLALQLFKNPNPNANDTEAPPL---KPFRYNLLHYDL--IITKLGRAKMFDEMQQILHQL 77
           +LA  L + P   + D E  P       + +     L                  +L   
Sbjct: 94  QLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVH 153

Query: 78  K--HDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTC 135
                 R +    ++  V+  + R    +  + V   +    +   + S    L  +   
Sbjct: 154 HGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQ 213

Query: 136 GKLDRMKELFISFNLKAIAVLDGLCSNLKIIMND 169
            +     E  +    +    L  L + + +   D
Sbjct: 214 DQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	176
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.93
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.92
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.71
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.71
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.43
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.42
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.39
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.39
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.39
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.37
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.37
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.36
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.36
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.35
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.34
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.33
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.33
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.32
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.31
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.3
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.29
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.27
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.25
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.25
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.23
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.23
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.23
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.23
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.23
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.23
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.22
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.17
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.16
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.16
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.14
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.13
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.12
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.11
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.11
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.07
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.07
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.05
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.04
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.03
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.03
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.03
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.01
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.01
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.01
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.0
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.99
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.99
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.98
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.98
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.91
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.91
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.89
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.89
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.89
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.88
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.87
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.86
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.86
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.83
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.81
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.8
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.8
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.79
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.78
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.78
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	98.77
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.76
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.76
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.75
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.74
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.73
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.72
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.72
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.72
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.72
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.71
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.71
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.7
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.7
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.69
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.69
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.68
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.68
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.68
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.65
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.65
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.65
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.64
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.63
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.63
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.63
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.62
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.62
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.6
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.58
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.57
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.56
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.56
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.55
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.54
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.54
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.53
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.53
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.52
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.5
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.48
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.48
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.47
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.45
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.44
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.44
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.44
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.43
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.42
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.41
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.4
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.4
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.39
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.39
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.39
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.38
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.38
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.38
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.38
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.37
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.35
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.35
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.34
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.34
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.33
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.33
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.31
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.29
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.29
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.28
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.28
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.28
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.25
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.24
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.23
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.23
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.22
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.21
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.2
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.19
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.19
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.18
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.17
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.15
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.13
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.13
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.12
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.11
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.07
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.07
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.06
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.06
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.05
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.04
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.03
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.03
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.02
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.01
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.0
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.93
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.9
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.88
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.84
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.83
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.79
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.78
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.76
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.7
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.66
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.64
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.61
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.6
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.59
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.5
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.47
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.4
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	97.4
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.38
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.34
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.33
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.28
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	97.24
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.19
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.12
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	97.1
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.07
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.9
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	96.85
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.8
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.67
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.59
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	96.57
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.55
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	96.36
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.2
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.19
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.09
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.04
1klx_A	138	Cysteine rich protein B; structural genomics, heli	95.82
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.77
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.75
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.39
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.36
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.35
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.13
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	95.11
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	95.04
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	94.71
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	94.68
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	94.48
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	94.3
1pc2_A	152	Mitochondria fission protein; unknown function; NM	93.97
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	93.7
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	93.7
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	93.27
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	93.07
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	92.48
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	92.28
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.39
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	91.17
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	90.52
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	90.33
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	87.49
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	86.31
2p58_C	116	Putative type III secretion protein YSCG; type III	85.9
2ion_A	152	PDCD4, programmed cell death 4, PDCD4; alpha-helic	84.49
2nsz_A	129	Programmed cell death protein 4; PDCD4, tumor supp	84.27
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	83.32
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	81.77
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	81.68
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	81.58
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	80.88
1ug3_A	339	EIF4GI, eukaryotic protein synthesis initiation fa	80.57
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	80.23

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=7.3e-36  Score=233.25  Aligned_cols=156  Identities=15%  Similarity=0.170  Sum_probs=148.8

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCC---------hHHHHHHHHHHh
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKM---------FDEMQQILHQLK   78 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~---------~~~a~~~~~~m~   78 (176)
                      .++.+|++|++.|++++|+++|++| .+         .|++||..+||+||.+|++.+.         +++|.++|++|.
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M-~~---------~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~   97 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEA-RR---------NGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMI   97 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHH-HH---------HTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHH-HH---------cCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHH
Confidence            4788999999999999999999999 55         4889999999999999997654         688999999999


Q ss_pred             hcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccch
Q 036589           79 HDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDG  158 (176)
Q Consensus        79 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~  158 (176)
                      +. |+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+. ||.
T Consensus        98 ~~-G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~-Pd~  175 (501)
T 4g26_A           98 VD-KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVV-PEE  175 (501)
T ss_dssp             HT-TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC-CCH
T ss_pred             Hh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CCH
Confidence            99 9999999999999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHhhccccCC
Q 036589          159 LCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       159 ~t~~~li~~~~~~g~~~  175 (176)
                      .||++||.+|++.|+++
T Consensus       176 ~ty~~Li~~~~~~g~~d  192 (501)
T 4g26_A          176 PELAALLKVSMDTKNAD  192 (501)
T ss_dssp             HHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHhhCCCHH
Confidence            99999999999999875

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=7.7e-35  Score=227.48  Aligned_cols=158  Identities=12%  Similarity=0.000  Sum_probs=151.0

Q ss_pred             CCCCCCHHHHHHHHHhccC---------hhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHH
Q 036589            3 KAKPTSPFRLASLLHLQKH---------PKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQI   73 (176)
Q Consensus         3 ~p~~~~~~~l~~~~~~~~~---------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~   73 (176)
                      +||.+|||.||.+|++.+.         +++|.++|++| ..         .++.||..+|++||.+|++.|++++|.++
T Consensus        58 ~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M-~~---------~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l  127 (501)
T 4g26_A           58 QLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQM-IV---------DKVVPNEATFTNGARLAVAKDDPEMAFDM  127 (501)
T ss_dssp             CCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHH-HH---------TTCCCCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             CCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHH-HH---------hCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence            6999999999999998765         67899999999 55         47899999999999999999999999999


Q ss_pred             HHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q 036589           74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI  153 (176)
Q Consensus        74 ~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~  153 (176)
                      |++|.+. |+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.+.
T Consensus       128 ~~~M~~~-g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~  206 (501)
T 4g26_A          128 VKQMKAF-GIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVR  206 (501)
T ss_dssp             HHHHHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHc-CCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCC
Confidence            9999999 999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccchHHHHHHHHHhhccc
Q 036589          154 AVLDGLCSNLKIIMNDSQV  172 (176)
Q Consensus       154 ~~p~~~t~~~li~~~~~~g  172 (176)
                      . |+..||++++..|++.+
T Consensus       207 ~-ps~~T~~~l~~~F~s~~  224 (501)
T 4g26_A          207 Q-VSKSTFDMIEEWFKSEV  224 (501)
T ss_dssp             S-BCHHHHHHHHHHHHSHH
T ss_pred             C-cCHHHHHHHHHHHhcCc
Confidence            9 99999999999998753

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.93  E-value=2.7e-26  Score=187.16  Aligned_cols=124  Identities=8%  Similarity=0.034  Sum_probs=113.1

Q ss_pred             CCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHH
Q 036589           48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD--TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL  125 (176)
Q Consensus        48 ~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  125 (176)
                      .--..+||++|++||+.|++++|.++|++|.+.  .|+.||.+|||+||.+||+.|++++|.++|++|.+.|+.||.+||
T Consensus       124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY  203 (1134)
T 3spa_A          124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY  203 (1134)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence            345668999999999999999999999887642  289999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCcH-HHHHHHHHHHHhccccccchHHHHHHHHHhhccc
Q 036589          126 NTLLNALLTCGKL-DRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQV  172 (176)
Q Consensus       126 ~~ll~~~~~~g~~-~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g  172 (176)
                      |+||+++|+.|+. ++|.++|++|.+.|+. ||..||+.++.++.+.+
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~-PD~vtY~~ll~~~eR~~  250 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQEGLK-LQALFTAVLLSEEDRAT  250 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHTCC-SHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCC-CChhhcccccChhhHHH
Confidence            9999999999984 7899999999999999 99999998777666543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.92  E-value=4.4e-27  Score=191.79  Aligned_cols=157  Identities=15%  Similarity=0.133  Sum_probs=127.3

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~   86 (176)
                      .|||+||++|++.|++++|.++|++| .+..      ..++.||+.+||+||++||+.|++++|.++|++|.+. |+.||
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM-~~m~------~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PD  199 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVH-HGQR------QKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPD  199 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHH-HHSH------HHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCC
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHH-HHHh------hcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCc
Confidence            37999999999999999999999887 3210      1478999999999999999999999999999999999 99999


Q ss_pred             hHHHHHHHHHHHhccC-HHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc-cccccchHHHHHH
Q 036589           87 EIIFCNVISFYGRARL-LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLK-AIAVLDGLCSNLK  164 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~-~~~~p~~~t~~~l  164 (176)
                      .+|||+||.++|+.|+ .++|.++|++|.+.|+.||..+|++++.+..+.+-++.+.++..++.-. ..+ |...|...|
T Consensus       200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~-~~~~t~~LL  278 (1134)
T 3spa_A          200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP-PPVNTSKLL  278 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCC-CCCCCCTTT
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCc-ccccchHHH
Confidence            9999999999999998 5789999999999999999999999998877764444443332222111 111 225566666


Q ss_pred             HHHhhccc
Q 036589          165 IIMNDSQV  172 (176)
Q Consensus       165 i~~~~~~g  172 (176)
                      .+.|.+.+
T Consensus       279 ~dl~s~d~  286 (1134)
T 3spa_A          279 RDVYAKDG  286 (1134)
T ss_dssp             HHHHCCCS
T ss_pred             HHHHccCC
Confidence            66666554

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.71  E-value=8.7e-17  Score=126.99  Aligned_cols=156  Identities=7%  Similarity=-0.154  Sum_probs=114.7

Q ss_pred             CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589            5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI   84 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~   84 (176)
                      ++.+|+.+...|.+.|++++|.++|+++ ...          .+.+..+|+.++.+|.+.|++++|.++|+++.+.  ..
T Consensus       372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~  438 (597)
T 2xpi_A          372 KAVTWLAVGIYYLCVNKISEARRYFSKS-STM----------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQ  438 (597)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TT
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHH-HHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--Cc
Confidence            3456677777777777777777777776 221          1225677888888888888888888888887765  23


Q ss_pred             CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc----cccccc--h
Q 036589           85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLK----AIAVLD--G  158 (176)
Q Consensus        85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~----~~~~p~--~  158 (176)
                      .+..+|+.++.+|.+.|++++|+++|+++.+.. +.+..+|+.+...|.+.|++++|.++|+++.+.    +.. |+  .
T Consensus       439 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-p~~~~  516 (597)
T 2xpi_A          439 GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN-EKPWA  516 (597)
T ss_dssp             TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-SGGGH
T ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc-hhhHH
Confidence            466777888888888888888888888877543 346777888888888888888888888888765    555 66  6


Q ss_pred             HHHHHHHHHhhccccCC
Q 036589          159 LCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       159 ~t~~~li~~~~~~g~~~  175 (176)
                      .+|..+..+|.+.|+++
T Consensus       517 ~~~~~l~~~~~~~g~~~  533 (597)
T 2xpi_A          517 ATWANLGHAYRKLKMYD  533 (597)
T ss_dssp             HHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhcCHH
Confidence            78888888888888764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.71  E-value=7.9e-17  Score=127.23  Aligned_cols=156  Identities=8%  Similarity=-0.034  Sum_probs=138.4

Q ss_pred             CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589            5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI   84 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~   84 (176)
                      +..+|+.+...|.+.|++++|+++|+++ ...          .+.+..+|+.++.+|.+.|++++|.++|+++.+. . .
T Consensus       406 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~  472 (597)
T 2xpi_A          406 FGPAWIGFAHSFAIEGEHDQAISAYTTA-ARL----------FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL-F-Q  472 (597)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHT----------TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-C
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHh----------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-C
Confidence            4568999999999999999999999998 331          2347889999999999999999999999999976 2 3


Q ss_pred             CchHHHHHHHHHHHhccCHHHHHHHHHhcccC----CCCcc--HhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccch
Q 036589           85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSF----NVQRT--VKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDG  158 (176)
Q Consensus        85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~  158 (176)
                      .+..+|+.+..+|.+.|++++|+++|+++.+.    +..|+  ..+|+.+..+|.+.|++++|.++|+++.+.+.  .+.
T Consensus       473 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~  550 (597)
T 2xpi_A          473 YDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST--NDA  550 (597)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS--CCH
T ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CCh
Confidence            47789999999999999999999999999865    66787  78999999999999999999999999988764  489


Q ss_pred             HHHHHHHHHhhccccCC
Q 036589          159 LCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       159 ~t~~~li~~~~~~g~~~  175 (176)
                      .+|..+..+|.+.|+++
T Consensus       551 ~~~~~l~~~~~~~g~~~  567 (597)
T 2xpi_A          551 NVHTAIALVYLHKKIPG  567 (597)
T ss_dssp             HHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhCCHH
Confidence            99999999999999875

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.43  E-value=3e-11  Score=80.86  Aligned_cols=152  Identities=11%  Similarity=-0.039  Sum_probs=128.8

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      .+..+...+...|++++|.+.|+++. ..          .+.+...|..+...+...|++++|...+++..+.  ...+.
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~   76 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVY-DA----------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNV   76 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTC-CT----------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHH-Hh----------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCH
Confidence            46667888999999999999999983 32          2346888999999999999999999999999876  23456


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHH
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIM  167 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~  167 (176)
                      ..+..+...+...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.|++..+....  +...+..+...
T Consensus        77 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~  153 (186)
T 3as5_A           77 KVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN--EGKVHRAIAFS  153 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc--chHHHHHHHHH
Confidence            788889999999999999999999988543 446788889999999999999999999999887543  67889999999


Q ss_pred             hhccccCC
Q 036589          168 NDSQVRVT  175 (176)
Q Consensus       168 ~~~~g~~~  175 (176)
                      |...|+++
T Consensus       154 ~~~~~~~~  161 (186)
T 3as5_A          154 YEQMGRHE  161 (186)
T ss_dssp             HHHTTCHH
T ss_pred             HHHcCCHH
Confidence            99888764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.42  E-value=8e-12  Score=93.86  Aligned_cols=119  Identities=10%  Similarity=0.004  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHH
Q 036589           51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLN  130 (176)
Q Consensus        51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~  130 (176)
                      ..+|..+..++.+.|++++|...|+++.+. . +.+..+|..+..+|.+.|++++|++.|+++.+.. +.+..+++.+..
T Consensus       237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  313 (388)
T 1w3b_A          237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL-Q-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN  313 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-C-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence            444444555555555555555555554443 1 1122344444555555555555555555444321 234444445555


Q ss_pred             HHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccC
Q 036589          131 ALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       131 ~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~  174 (176)
                      .+.+.|++++|.++|+++.+...  .+..++..+...|.+.|++
T Consensus       314 ~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~~  355 (388)
T 1w3b_A          314 IKREQGNIEEAVRLYRKALEVFP--EFAAAHSNLASVLQQQGKL  355 (388)
T ss_dssp             HHHTTTCHHHHHHHHHHHTTSCT--TCHHHHHHHHHHHHTTTCC
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHcCCH
Confidence            55555555555555555444322  2344444555555544443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.39  E-value=9.9e-12  Score=93.37  Aligned_cols=153  Identities=14%  Similarity=0.092  Sum_probs=96.2

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~   86 (176)
                      .+|+.+...+.+.|++++|...|+++. ..          .+.+...|..+...+...|++++|...|++..+. . +-+
T Consensus       170 ~~~~~l~~~~~~~g~~~~A~~~~~~al-~~----------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~-p~~  236 (388)
T 1w3b_A          170 VAWSNLGCVFNAQGEIWLAIHHFEKAV-TL----------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-S-PNH  236 (388)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHH-HH----------CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH-C-TTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-hc----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-C-cCC
Confidence            456666667777777777777777662 21          1124556666667777777777777777666654 1 123


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHH
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKII  166 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~  166 (176)
                      ..++..+..+|.+.|++++|++.|+++.+.. +.+..+|+.+...+.+.|++++|.++|+++.+...  .+..+|..+..
T Consensus       237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~  313 (388)
T 1w3b_A          237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP--THADSLNNLAN  313 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc--ccHHHHHHHHH
Confidence            5566666777777777777777777666543 22455666677777777777777777777666543  35666677777


Q ss_pred             HhhccccCC
Q 036589          167 MNDSQVRVT  175 (176)
Q Consensus       167 ~~~~~g~~~  175 (176)
                      .+.+.|+++
T Consensus       314 ~~~~~g~~~  322 (388)
T 1w3b_A          314 IKREQGNIE  322 (388)
T ss_dssp             HHHTTTCHH
T ss_pred             HHHHcCCHH
Confidence            776666643

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.39  E-value=1.6e-11  Score=89.60  Aligned_cols=146  Identities=14%  Similarity=0.140  Sum_probs=112.8

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      .+..+-..+.+.|++++|++.|++  .              .+...+..+...+.+.|++++|.+.|+++.+. .  |+.
T Consensus       103 ~~~~la~~~~~~g~~~~Al~~l~~--~--------------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-~--p~~  163 (291)
T 3mkr_A          103 FLLMAASIYFYDQNPDAALRTLHQ--G--------------DSLECMAMTVQILLKLDRLDLARKELKKMQDQ-D--EDA  163 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTT--C--------------CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--TTC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHhC--C--------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-C--cCc
Confidence            344555778888888888888877  1              16778888999999999999999999999876 3  443


Q ss_pred             HHH---HHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHH
Q 036589           88 IIF---CNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLK  164 (176)
Q Consensus        88 ~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~l  164 (176)
                      ...   ..++..+...|++++|+.+|+++.+. .+.+...++.+..++.+.|++++|.+.|++..+....  +..++..+
T Consensus       164 ~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~--~~~~l~~l  240 (291)
T 3mkr_A          164 TLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG--HPETLINL  240 (291)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHH
Confidence            221   22334444558899999999998865 3567888999999999999999999999998877664  77788888


Q ss_pred             HHHhhccccCC
Q 036589          165 IIMNDSQVRVT  175 (176)
Q Consensus       165 i~~~~~~g~~~  175 (176)
                      +..+...|+.+
T Consensus       241 ~~~~~~~g~~~  251 (291)
T 3mkr_A          241 VVLSQHLGKPP  251 (291)
T ss_dssp             HHHHHHTTCCH
T ss_pred             HHHHHHcCCCH
Confidence            88888888753

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.39  E-value=4.5e-12  Score=96.71  Aligned_cols=153  Identities=11%  Similarity=-0.021  Sum_probs=105.4

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~   86 (176)
                      ..+..+...+.+.|++++|+.+|+.+ ...          .+.+...|..+..++...|++++|...|+++.+. + +.+
T Consensus        27 ~~~~~~~~~~~~~g~~~~A~~~~~~~-l~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~-p~~   93 (450)
T 2y4t_A           27 EKHLELGKKLLAAGQLADALSQFHAA-VDG----------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL-K-MDF   93 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH-HHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHH-HHh----------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CCc
Confidence            45667777888888888888888876 221          1236777888888888888888888888888766 2 234


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccH---hHHHHHH------------HHHHhcCcHHHHHHHHHHHHhc
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV---KSLNTLL------------NALLTCGKLDRMKELFISFNLK  151 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~ll------------~~~~~~g~~~~a~~l~~~m~~~  151 (176)
                      ...+..+..+|.+.|++++|.+.|+++.+.. +.+.   ..+..+.            ..+...|++++|.++|+++.+.
T Consensus        94 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  172 (450)
T 2y4t_A           94 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV  172 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5677778888888888888888888877543 1222   4444443            3367777777777777777665


Q ss_pred             cccccchHHHHHHHHHhhccccCC
Q 036589          152 AIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       152 ~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      ...  +...+..+...|.+.|+++
T Consensus       173 ~~~--~~~~~~~l~~~~~~~g~~~  194 (450)
T 2y4t_A          173 CVW--DAELRELRAECFIKEGEPR  194 (450)
T ss_dssp             CTT--CHHHHHHHHHHHHHTTCGG
T ss_pred             CCC--ChHHHHHHHHHHHHCCCHH
Confidence            443  5666777777777777654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.37  E-value=8.6e-12  Score=87.09  Aligned_cols=155  Identities=12%  Similarity=-0.024  Sum_probs=125.5

Q ss_pred             CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhc-----------CChHHHHHH
Q 036589            5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRA-----------KMFDEMQQI   73 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~-----------g~~~~a~~~   73 (176)
                      ++..+..+-..+.+.|++++|+..|++. ...          .+.+...|..+..++.+.           |++++|...
T Consensus        38 ~~~a~~~lg~~~~~~g~~~~A~~~~~~a-l~~----------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~  106 (217)
T 2pl2_A           38 DPEALYWLARTQLKLGLVNPALENGKTL-VAR----------TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSV  106 (217)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHH----------CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHh----------CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHH
Confidence            3445677778888888999998888886 221          123677888899999999           999999999


Q ss_pred             HHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q 036589           74 LHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI  153 (176)
Q Consensus        74 ~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~  153 (176)
                      |++..+. . +-+...+..+-.+|...|++++|+..|++..+..  .+...+..+-..|...|++++|.+.|++..+..+
T Consensus       107 ~~~al~~-~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P  182 (217)
T 2pl2_A          107 LKDAERV-N-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQAP  182 (217)
T ss_dssp             HHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHh-C-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            9999976 2 2346778889999999999999999999998776  7888999999999999999999999999988766


Q ss_pred             cccchHHHHHHHHHhhccccCCC
Q 036589          154 AVLDGLCSNLKIIMNDSQVRVTG  176 (176)
Q Consensus       154 ~~p~~~t~~~li~~~~~~g~~~~  176 (176)
                      .  +...+..+...+.+.|++++
T Consensus       183 ~--~~~~~~~la~~~~~~g~~~~  203 (217)
T 2pl2_A          183 K--DLDLRVRYASALLLKGKAEE  203 (217)
T ss_dssp             T--CHHHHHHHHHHHTC------
T ss_pred             C--ChHHHHHHHHHHHHccCHHH
Confidence            4  77889999999999998763

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.37  E-value=2.7e-11  Score=83.69  Aligned_cols=155  Identities=10%  Similarity=-0.121  Sum_probs=119.1

Q ss_pred             CCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 036589            6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP   85 (176)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~   85 (176)
                      +..+..+...+.+.|++++|.+.|+... ..          .+.+...|..+...+...|++++|...+++..+. . ..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~-~~   74 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDAL-KS----------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI-K-PD   74 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TT
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHH-Hh----------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh-C-CC
Confidence            3456777888888999999999998872 21          1235778888888889999999999999888876 2 33


Q ss_pred             chHHHHHHHHHHHhc-cCHHHHHHHHHhcccCCCCc-cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHH
Q 036589           86 EEIIFCNVISFYGRA-RLLEHALQVFDEMPSFNVQR-TVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNL  163 (176)
Q Consensus        86 ~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~  163 (176)
                      +...+..+...|... |++++|+..|+++.+.+..| +...+..+...+...|++++|.+.|+++.+....  +...+..
T Consensus        75 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~  152 (225)
T 2vq2_A           75 SAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ--FPPAFKE  152 (225)
T ss_dssp             CHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHH
T ss_pred             ChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CchHHHH
Confidence            566778888888899 99999999998887632223 3567788888888899999999999888776543  5777888


Q ss_pred             HHHHhhccccCC
Q 036589          164 KIIMNDSQVRVT  175 (176)
Q Consensus       164 li~~~~~~g~~~  175 (176)
                      +...|.+.|+++
T Consensus       153 la~~~~~~~~~~  164 (225)
T 2vq2_A          153 LARTKMLAGQLG  164 (225)
T ss_dssp             HHHHHHHHTCHH
T ss_pred             HHHHHHHcCCHH
Confidence            888888877754

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.36  E-value=2.2e-11  Score=85.97  Aligned_cols=119  Identities=13%  Similarity=0.056  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC-chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589           51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP-EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL  129 (176)
Q Consensus        51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  129 (176)
                      ...|..+...+...|++++|.+.++++.+. +..| +...+..+...|.+.|++++|++.|++..+.. +.+...+..+.
T Consensus       105 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la  182 (252)
T 2ho1_A          105 ARVLNNYGGFLYEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMA  182 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHH
Confidence            444444445555555555555555554441 2222 33344444455555555555555555444322 12344444455


Q ss_pred             HHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhcccc
Q 036589          130 NALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVR  173 (176)
Q Consensus       130 ~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~  173 (176)
                      ..+...|++++|.++|++..+....  +...+..+...|...|+
T Consensus       183 ~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~  224 (252)
T 2ho1_A          183 DLLYKEREYVPARQYYDLFAQGGGQ--NARSLLLGIRLAKVFED  224 (252)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcC--cHHHHHHHHHHHHHccC
Confidence            5555555555555555554443222  33444444444444443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.36  E-value=3.8e-11  Score=84.76  Aligned_cols=154  Identities=9%  Similarity=-0.090  Sum_probs=129.2

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~   86 (176)
                      ..+..+...+...|++++|.+.|+++ ...          .+.+...|..+...+...|++++|.+.+++..+. . ..+
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~a-l~~----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~-~~~  104 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKA-LEI----------DPSSADAHAALAVVFQTEMEPKLADEEYRKALAS-D-SRN  104 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHH-HHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTC
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHH-Hhc----------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-C-cCc
Confidence            45677788899999999999999997 221          1236788999999999999999999999999876 2 336


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCc-cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR-TVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI  165 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li  165 (176)
                      ...+..+...|...|++++|++.|+++.+.+..| +...+..+...+...|++++|.+.|++..+....  +...+..+.
T Consensus       105 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~la  182 (252)
T 2ho1_A          105 ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN--QPSVALEMA  182 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc--cHHHHHHHH
Confidence            7788889999999999999999999998733344 5677888899999999999999999999886553  678899999


Q ss_pred             HHhhccccCC
Q 036589          166 IMNDSQVRVT  175 (176)
Q Consensus       166 ~~~~~~g~~~  175 (176)
                      ..|...|+++
T Consensus       183 ~~~~~~g~~~  192 (252)
T 2ho1_A          183 DLLYKEREYV  192 (252)
T ss_dssp             HHHHHTTCHH
T ss_pred             HHHHHcCCHH
Confidence            9999888764

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.35  E-value=2.6e-11  Score=84.93  Aligned_cols=154  Identities=11%  Similarity=0.039  Sum_probs=102.3

Q ss_pred             CCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 036589            6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP   85 (176)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~   85 (176)
                      +..+..+...+.+.|++++|++.|++. ...          .+.+...|..+...+...|++++|.+.+++..+. . ..
T Consensus        57 ~~~~~~la~~~~~~~~~~~A~~~~~~~-~~~----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~-~~  123 (243)
T 2q7f_A           57 AIPYINFANLLSSVNELERALAFYDKA-LEL----------DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA-G-ME  123 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-T-CC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH-HHc----------CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh-C-CC
Confidence            345556666777777777777777765 221          1225666777777777777777777777777665 2 23


Q ss_pred             chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589           86 EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI  165 (176)
Q Consensus        86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li  165 (176)
                      +...+..+...|.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|.+.|++..+....  +..+|..+.
T Consensus       124 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la  200 (243)
T 2q7f_A          124 NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG--HADAFYNAG  200 (243)
T ss_dssp             SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHHHHHHHH
Confidence            45566667777777777777777777766432 235666777777777777777777777777665443  566777777


Q ss_pred             HHhhccccCC
Q 036589          166 IMNDSQVRVT  175 (176)
Q Consensus       166 ~~~~~~g~~~  175 (176)
                      ..|...|+++
T Consensus       201 ~~~~~~~~~~  210 (243)
T 2q7f_A          201 VTYAYKENRE  210 (243)
T ss_dssp             HHHHHTTCTT
T ss_pred             HHHHHccCHH
Confidence            7777777654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.34  E-value=2.8e-11  Score=84.45  Aligned_cols=156  Identities=13%  Similarity=-0.005  Sum_probs=131.1

Q ss_pred             CCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 036589            3 KAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR   82 (176)
Q Consensus         3 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g   82 (176)
                      ++++..+..+-..+.+.|++++|+..|++.. ..          .+.+...|..+..++.+.|++++|...|++..+. .
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~----------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-~   69 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERAL-KE----------NPQDPEALYWLARTQLKLGLVNPALENGKTLVAR-T   69 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHH-TT----------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C
Confidence            4566678888899999999999999999972 21          2347888999999999999999999999999976 2


Q ss_pred             CCCchHHHHHHHHHHHhc-----------cCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589           83 VIPEEIIFCNVISFYGRA-----------RLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLK  151 (176)
Q Consensus        83 ~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~  151 (176)
                       +-+...+..+..+|.+.           |++++|+..|++..+.. +-+...+..+-..+...|++++|++.|++..+.
T Consensus        70 -P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  147 (217)
T 2pl2_A           70 -PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALAL  147 (217)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence             23556788899999999           99999999999988653 235778888899999999999999999999887


Q ss_pred             cccccchHHHHHHHHHhhccccCC
Q 036589          152 AIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       152 ~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      . .  +...+..+-..|...|+++
T Consensus       148 ~-~--~~~~~~~la~~~~~~g~~~  168 (217)
T 2pl2_A          148 E-D--TPEIRSALAELYLSMGRLD  168 (217)
T ss_dssp             C-C--CHHHHHHHHHHHHHHTCHH
T ss_pred             c-c--chHHHHHHHHHHHHcCCHH
Confidence            7 5  7788889999999988865

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.33  E-value=1.4e-11  Score=94.00  Aligned_cols=155  Identities=8%  Similarity=-0.102  Sum_probs=127.2

Q ss_pred             CCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036589            4 AKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV   83 (176)
Q Consensus         4 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~   83 (176)
                      .++..|..+...+.+.|++++|++.|+++ ...          .+.+...|..+..+|.+.|++++|.+.|+++.+.   
T Consensus        58 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a-l~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---  123 (450)
T 2y4t_A           58 DNYIAYYRRATVFLAMGKSKAALPDLTKV-IQL----------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS---  123 (450)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHH-Hhc----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Confidence            34567888899999999999999999998 321          1236788999999999999999999999999876   


Q ss_pred             CCc-h---HHHHHH------------HHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHH
Q 036589           84 IPE-E---IIFCNV------------ISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFIS  147 (176)
Q Consensus        84 ~~~-~---~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~  147 (176)
                      .|+ .   ..+..+            ...+.+.|++++|+..|+++.+.. +.+...+..+...|.+.|++++|.++|++
T Consensus       124 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  202 (450)
T 2y4t_A          124 NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKA  202 (450)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHH
T ss_pred             CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            233 3   455555            445899999999999999988643 34778899999999999999999999999


Q ss_pred             HHhccccccchHHHHHHHHHhhccccCC
Q 036589          148 FNLKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       148 m~~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      +.+....  +..+|..+...|...|+++
T Consensus       203 ~~~~~~~--~~~~~~~l~~~~~~~g~~~  228 (450)
T 2y4t_A          203 ASKLKND--NTEAFYKISTLYYQLGDHE  228 (450)
T ss_dssp             HHHHHCS--CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHhCCC--CHHHHHHHHHHHHHcCCHH
Confidence            9876543  7889999999999988764

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.33  E-value=2.3e-11  Score=85.17  Aligned_cols=156  Identities=6%  Similarity=-0.071  Sum_probs=114.4

Q ss_pred             CCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036589            4 AKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV   83 (176)
Q Consensus         4 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~   83 (176)
                      ..+..|..+...+.+.|++++|...|++. ...          .+.+...+..+...+.+.|++++|...+++..+. . 
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~-l~~----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~-   87 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKA-IEE----------NKEDAIPYINFANLLSSVNELERALAFYDKALEL-D-   87 (243)
T ss_dssp             ---------------------CCTTHHHH-HTT----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHH-HHh----------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-C-
Confidence            45567788888999999999999999998 222          2336888999999999999999999999999876 2 


Q ss_pred             CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHH
Q 036589           84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNL  163 (176)
Q Consensus        84 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~  163 (176)
                      ..+...+..+...|...|++++|.+.|++..+.. +.+...+..+...+.+.|++++|.+++++..+....  +...+..
T Consensus        88 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~  164 (243)
T 2q7f_A           88 SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN--DTEARFQ  164 (243)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT--CHHHHHH
T ss_pred             CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc--cHHHHHH
Confidence            3467788889999999999999999999988654 346778899999999999999999999999876553  6788899


Q ss_pred             HHHHhhccccCC
Q 036589          164 KIIMNDSQVRVT  175 (176)
Q Consensus       164 li~~~~~~g~~~  175 (176)
                      +...|.+.|+++
T Consensus       165 l~~~~~~~~~~~  176 (243)
T 2q7f_A          165 FGMCLANEGMLD  176 (243)
T ss_dssp             HHHHHHHHTCCH
T ss_pred             HHHHHHHcCCHH
Confidence            999999888764

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.32  E-value=4.6e-11  Score=82.53  Aligned_cols=155  Identities=11%  Similarity=-0.034  Sum_probs=125.6

Q ss_pred             CCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCCC
Q 036589            6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRA-KMFDEMQQILHQLKHDTRVI   84 (176)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~-g~~~~a~~~~~~m~~~~g~~   84 (176)
                      +..+..+...+...|++++|.+.|++. ...          .+.+...|..+...+... |++++|...++++.+. +..
T Consensus        42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a-~~~----------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~-~~~  109 (225)
T 2vq2_A           42 ELAWLVRAEIYQYLKVNDKAQESFRQA-LSI----------KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD-PTY  109 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHH----------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTS-TTC
T ss_pred             hHHHHHHHHHHHHcCChHHHHHHHHHH-HHh----------CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC-cCC
Confidence            446778888999999999999999987 221          123677899999999999 9999999999999983 333


Q ss_pred             C-chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHH
Q 036589           85 P-EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNL  163 (176)
Q Consensus        85 ~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~  163 (176)
                      | +...+..+..++.+.|++++|+..|+++.+.. +.+...+..+...+.+.|++++|.++|++..+.... .+...+..
T Consensus       110 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~  187 (225)
T 2vq2_A          110 PTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV-LQADDLLL  187 (225)
T ss_dssp             SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS-CCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CCHHHHHH
Confidence            3 46778889999999999999999999988643 335788899999999999999999999999876552 35666777


Q ss_pred             HHHHhhccccC
Q 036589          164 KIIMNDSQVRV  174 (176)
Q Consensus       164 li~~~~~~g~~  174 (176)
                      +...+...|+.
T Consensus       188 ~~~~~~~~~~~  198 (225)
T 2vq2_A          188 GWKIAKALGNA  198 (225)
T ss_dssp             HHHHHHHTTCH
T ss_pred             HHHHHHhcCcH
Confidence            77777776654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.31  E-value=4e-11  Score=81.01  Aligned_cols=154  Identities=8%  Similarity=-0.113  Sum_probs=126.1

Q ss_pred             CCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 036589            6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP   85 (176)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~   85 (176)
                      +..|..+-..|.+.|++++|++.|++....           .+-+...|..+..++.+.|++++|...++.....  ..-
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~-----------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~   71 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA-----------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTT   71 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cch
Confidence            446788889999999999999999997222           1236788999999999999999999999998876  233


Q ss_pred             chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589           86 EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI  165 (176)
Q Consensus        86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li  165 (176)
                      +...+..+...+...++++.|...+++..+.. +-+...+..+-..|.+.|++++|++.|++..+....  +..+|..+-
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~lg  148 (184)
T 3vtx_A           72 SAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG--FIRAYQSIG  148 (184)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch--hhhHHHHHH
Confidence            45666777888889999999999999877543 346777888889999999999999999998887654  778888999


Q ss_pred             HHhhccccCC
Q 036589          166 IMNDSQVRVT  175 (176)
Q Consensus       166 ~~~~~~g~~~  175 (176)
                      .+|.+.|+++
T Consensus       149 ~~~~~~g~~~  158 (184)
T 3vtx_A          149 LAYEGKGLRD  158 (184)
T ss_dssp             HHHHHTTCHH
T ss_pred             HHHHHCCCHH
Confidence            9999888764

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.30  E-value=9.7e-11  Score=74.17  Aligned_cols=131  Identities=11%  Similarity=0.074  Sum_probs=109.8

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      .|..+...+.+.|++++|..+|+++ ...          .+.+...|..+...+...|++++|...++++... . ..+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~-~~~----------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~   69 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKA-LEL----------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSA   69 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHH-HHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHH-HHc----------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C-CCch
Confidence            4677888999999999999999997 221          1236778888999999999999999999999876 2 3456


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA  152 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~  152 (176)
                      ..+..+...+...|++++|.+.|+++.+.. +.+...+..+...+.+.|++++|.+.|+++.+..
T Consensus        70 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  133 (136)
T 2fo7_A           70 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD  133 (136)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence            678889999999999999999999988643 3467788899999999999999999999987643

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.29  E-value=9.8e-12  Score=92.58  Aligned_cols=167  Identities=10%  Similarity=-0.043  Sum_probs=119.3

Q ss_pred             CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589            5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI   84 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~   84 (176)
                      ++..|..+...|.+.|++++|+..|+++. ...................+..+...+.+.|++++|...|+++.+...-.
T Consensus       132 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  210 (365)
T 4eqf_A          132 NLKALMALAVSYTNTSHQQDACEALKNWI-KQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM  210 (365)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSS
T ss_pred             CHHHHHHHHHHHHccccHHHHHHHHHHHH-HhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc
Confidence            34567888888999999999999998872 21000000000000112344556788899999999999999999873333


Q ss_pred             CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHH
Q 036589           85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLK  164 (176)
Q Consensus        85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~l  164 (176)
                      ++..++..+...|.+.|++++|+..|++..+.. +.+..+|+.+...|.+.|++++|.+.|++..+....  +..+|..+
T Consensus       211 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l  287 (365)
T 4eqf_A          211 IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG--FIRSRYNL  287 (365)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--chHHHHHH
Confidence            367889999999999999999999999988653 346788999999999999999999999999887553  68899999


Q ss_pred             HHHhhccccCC
Q 036589          165 IIMNDSQVRVT  175 (176)
Q Consensus       165 i~~~~~~g~~~  175 (176)
                      ...|.+.|+++
T Consensus       288 ~~~~~~~g~~~  298 (365)
T 4eqf_A          288 GISCINLGAYR  298 (365)
T ss_dssp             HHHHHHHTCCH
T ss_pred             HHHHHHCCCHH
Confidence            99999998875

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.27  E-value=9.8e-11  Score=87.14  Aligned_cols=155  Identities=8%  Similarity=-0.092  Sum_probs=117.5

Q ss_pred             CCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 036589            6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP   85 (176)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~   85 (176)
                      ...+..+...+.+.|++++|+++|+.+. ..          .+.+...|..+..++.+.|++++|...|++..+. . +.
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-p~  131 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAI-LQ----------DPGDAEAWQFLGITQAENENEQAAIVALQRCLEL-Q-PN  131 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHH-HH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TT
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHH-Hh----------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CC
Confidence            4458888888899999999999998872 21          1336778888889999999999999999888876 2 33


Q ss_pred             chHHHHHHHHHHHhccCHHHHHHHHHhcccCC------------------------------------------CCc---
Q 036589           86 EEIIFCNVISFYGRARLLEHALQVFDEMPSFN------------------------------------------VQR---  120 (176)
Q Consensus        86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------------------------------------------~~p---  120 (176)
                      +...+..+..+|...|++++|+..|+++.+..                                          ..|   
T Consensus       132 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  211 (365)
T 4eqf_A          132 NLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMI  211 (365)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSC
T ss_pred             CHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCcc
Confidence            46778888888888888888888887765421                                          012   


Q ss_pred             cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589          121 TVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       121 ~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      +...+..+...|...|++++|.+.|++..+....  +..+|..+...|...|+++
T Consensus       212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~  264 (365)
T 4eqf_A          212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE--DYSLWNRLGATLANGDRSE  264 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHH
Confidence            4667778888888888888888888888776543  6778888888888877754

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.25  E-value=4e-11  Score=87.48  Aligned_cols=150  Identities=12%  Similarity=-0.032  Sum_probs=94.5

Q ss_pred             CCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 036589            6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP   85 (176)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~   85 (176)
                      ..++..+...+.+.++.++|++.|+++....         ..+-+...+..+...+...|++++|.+.+++       ..
T Consensus        65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~---------~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~  128 (291)
T 3mkr_A           65 LQAVRMFAEYLASHSRRDAIVAELDREMSRS---------VDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GD  128 (291)
T ss_dssp             HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSC---------CCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CC
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc---------cCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CC
Confidence            3345556666666677777777776651110         0122445555566667777777777776665       23


Q ss_pred             chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHH---HHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHH
Q 036589           86 EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL---NTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSN  162 (176)
Q Consensus        86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~---~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~  162 (176)
                      +...+..+...|.+.|++++|.+.|+++.+..  |+....   ..++..+...|++++|..+|+++.+...  .+...|+
T Consensus       129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p--~~~~~~~  204 (291)
T 3mkr_A          129 SLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS--PTLLLLN  204 (291)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC--CCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC--CcHHHHH
Confidence            45566777777777888888888888777543  443211   1233444455778888888888877633  4777788


Q ss_pred             HHHHHhhccccCC
Q 036589          163 LKIIMNDSQVRVT  175 (176)
Q Consensus       163 ~li~~~~~~g~~~  175 (176)
                      .+..++.+.|+++
T Consensus       205 ~la~~~~~~g~~~  217 (291)
T 3mkr_A          205 GQAACHMAQGRWE  217 (291)
T ss_dssp             HHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHH
Confidence            8888888888764

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.25  E-value=2.3e-10  Score=93.06  Aligned_cols=155  Identities=11%  Similarity=-0.034  Sum_probs=132.9

Q ss_pred             CCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 036589            6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP   85 (176)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~   85 (176)
                      +..++.|-..|.+.|++++|++.|++...-           .+-+...|..+..+|.+.|++++|.+.|++..+..  .-
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l-----------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~   75 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEV-----------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PT   75 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC
Confidence            346888999999999999999999997221           12268899999999999999999999999998762  23


Q ss_pred             chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589           86 EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI  165 (176)
Q Consensus        86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li  165 (176)
                      +...|+.+-.+|.+.|++++|++.|++..+.. +-+...|+.+-..|...|++++|++.|++..+....  +...|..+.
T Consensus        76 ~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~--~~~a~~~L~  152 (723)
T 4gyw_A           76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD--FPDAYCNLA  152 (723)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--CHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHhhhh
Confidence            46788999999999999999999999988654 336788999999999999999999999999887665  688999999


Q ss_pred             HHhhccccCCC
Q 036589          166 IMNDSQVRVTG  176 (176)
Q Consensus       166 ~~~~~~g~~~~  176 (176)
                      ..|...|++++
T Consensus       153 ~~l~~~g~~~~  163 (723)
T 4gyw_A          153 HCLQIVCDWTD  163 (723)
T ss_dssp             HHHHHTTCCTT
T ss_pred             hHHHhcccHHH
Confidence            99999999874

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.23  E-value=1.1e-10  Score=82.20  Aligned_cols=161  Identities=9%  Similarity=-0.092  Sum_probs=129.0

Q ss_pred             CCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCc----HHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 036589            4 AKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYN----LLHYDLIITKLGRAKMFDEMQQILHQLKH   79 (176)
Q Consensus         4 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~   79 (176)
                      +++..+..+...+...|++++|++.|+... ...       +...++    ...|..+..++.+.|++++|...|++..+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  107 (258)
T 3uq3_A           36 KDITYLNNRAAAEYEKGEYETAISTLNDAV-EQG-------REMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT  107 (258)
T ss_dssp             CCTHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHH-------HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcccHHHHHHHHHHHH-HhC-------cccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            345678888899999999999999999872 210       111112    67899999999999999999999999987


Q ss_pred             cCC-----------------------CC-CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhc
Q 036589           80 DTR-----------------------VI-PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTC  135 (176)
Q Consensus        80 ~~g-----------------------~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  135 (176)
                      ...                       .. .+...+..+...+...|++++|+..|++..+.. +.+...|..+...|.+.
T Consensus       108 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~  186 (258)
T 3uq3_A          108 EHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKL  186 (258)
T ss_dssp             HCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             cCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh
Confidence            310                       12 234567788899999999999999999988644 34678899999999999


Q ss_pred             CcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589          136 GKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       136 g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      |++++|.+.|++..+....  +...|..+...|...|+++
T Consensus       187 ~~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~g~~~  224 (258)
T 3uq3_A          187 MSFPEAIADCNKAIEKDPN--FVRAYIRKATAQIAVKEYA  224 (258)
T ss_dssp             TCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHH
T ss_pred             CCHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHhhHH
Confidence            9999999999999887553  6888999999999888764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.23  E-value=1.9e-10  Score=85.37  Aligned_cols=122  Identities=7%  Similarity=-0.072  Sum_probs=101.3

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL  129 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  129 (176)
                      +...|..+...+.+.|++++|...|++..+.  .+.+...+..+...|.+.|++++|+..|++..+.. +.+...+..+.
T Consensus       216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~  292 (368)
T 1fch_A          216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLG  292 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence            5788888999999999999999999998876  23356788889999999999999999999887543 34677889999


Q ss_pred             HHHHhcCcHHHHHHHHHHHHhcccccc----------chHHHHHHHHHhhccccCC
Q 036589          130 NALLTCGKLDRMKELFISFNLKAIAVL----------DGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       130 ~~~~~~g~~~~a~~l~~~m~~~~~~~p----------~~~t~~~li~~~~~~g~~~  175 (176)
                      ..|.+.|++++|.+.|++..+.... .          ...+|..+..+|...|+.+
T Consensus       293 ~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  347 (368)
T 1fch_A          293 ISCINLGAHREAVEHFLEALNMQRK-SRGPRGEGGAMSENIWSTLRLALSMLGQSD  347 (368)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHT-C------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCC-CCCccccccchhhHHHHHHHHHHHHhCChH
Confidence            9999999999999999998765433 1          1688999999999998876

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.23  E-value=8.1e-10  Score=81.95  Aligned_cols=154  Identities=10%  Similarity=-0.009  Sum_probs=103.9

Q ss_pred             CCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 036589            6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP   85 (176)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~   85 (176)
                      ...+..+...+.+.|++++|+..|+++. ..          .+.+...|..+..++.+.|++++|...|++..+. . +.
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~-~~  130 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAV-QQ----------DPKHMEAWQYLGTTQAENEQELLAISALRRCLEL-K-PD  130 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHH-HS----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TT
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHH-Hh----------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhc-C-CC
Confidence            4567777888888888888888888872 21          1235677777888888888888888888887765 2 23


Q ss_pred             chHHHHHHHHHHHhccCHHHHHHHHHhcccCCC-----------------------------------------------
Q 036589           86 EEIIFCNVISFYGRARLLEHALQVFDEMPSFNV-----------------------------------------------  118 (176)
Q Consensus        86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----------------------------------------------  118 (176)
                      +..++..+..+|...|++++|+..|+++.+..-                                               
T Consensus       131 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  210 (368)
T 1fch_A          131 NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL  210 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence            556677777777777777777777776553220                                               


Q ss_pred             Cc---cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccC
Q 036589          119 QR---TVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       119 ~p---~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~  174 (176)
                      .|   +..++..+...|.+.|++++|.+.|++..+....  +..+|..+...|.+.|++
T Consensus       211 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~g~~  267 (368)
T 1fch_A          211 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN--DYLLWNKLGATLANGNQS  267 (368)
T ss_dssp             STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCH
T ss_pred             CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHcCCH
Confidence            11   3556666667777777777777777776655432  456666666666666654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.23  E-value=3.9e-10  Score=82.17  Aligned_cols=156  Identities=9%  Similarity=-0.038  Sum_probs=105.0

Q ss_pred             CCCCHHHHHHHHHhcc-ChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036589            5 KPTSPFRLASLLHLQK-HPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV   83 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~   83 (176)
                      ++..|..+...+...| ++++|.+.|++. ...          .+.+...|..+...+...|++++|...+++..+. . 
T Consensus        89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a-~~~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~-  155 (330)
T 3hym_B           89 NPVSWFAVGCYYLMVGHKNEHARRYLSKA-TTL----------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL-M-  155 (330)
T ss_dssp             STHHHHHHHHHHHHSCSCHHHHHHHHHHH-HTT----------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-T-
T ss_pred             CHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHh----------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-c-
Confidence            3445666667777777 777777777776 221          1224556777777777777777777777777765 2 


Q ss_pred             CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--------ccc
Q 036589           84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA--------IAV  155 (176)
Q Consensus        84 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~--------~~~  155 (176)
                      +.+...+..+...|...|++++|...|++..+.. +.+...+..+...+...|++++|.+.|++..+..        .+ 
T Consensus       156 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~-  233 (330)
T 3hym_B          156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVD-  233 (330)
T ss_dssp             TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTT-
T ss_pred             cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccccc-
Confidence            2234555557777778888888888888777543 3456777777788888888888888887776532        12 


Q ss_pred             cchHHHHHHHHHhhccccCC
Q 036589          156 LDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       156 p~~~t~~~li~~~~~~g~~~  175 (176)
                      .+..+|..+...|...|+++
T Consensus       234 ~~~~~~~~la~~~~~~g~~~  253 (330)
T 3hym_B          234 KWEPLLNNLGHVCRKLKKYA  253 (330)
T ss_dssp             TCCHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHhcCHH
Confidence            34567777777777777653

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.23  E-value=7.2e-13  Score=101.13  Aligned_cols=139  Identities=10%  Similarity=0.048  Sum_probs=37.2

Q ss_pred             CCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036589            4 AKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV   83 (176)
Q Consensus         4 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~   83 (176)
                      |.+.+|+.|..++.+.|++++|++.|.+.                +|...|..++.++...|++++|.+.++..++.   
T Consensus        30 ~~~~vWs~La~A~l~~g~~~eAIdsfika----------------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~---   90 (449)
T 1b89_A           30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA----------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK---   90 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHcC----------------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---
Confidence            34457888888888888888888888554                15556777777777777777777766555543   


Q ss_pred             CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHh--------------------------HHHHHHHHHHhcCc
Q 036589           84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK--------------------------SLNTLLNALLTCGK  137 (176)
Q Consensus        84 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--------------------------~~~~ll~~~~~~g~  137 (176)
                      .++..+.+.++.+|.+.|+++++.++++.       |+..                          .|..+..++.+.|+
T Consensus        91 ~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~  163 (449)
T 1b89_A           91 ARESYVETELIFALAKTNRLAELEEFING-------PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGE  163 (449)
T ss_dssp             ------------------CHHHHTTTTTC-------C----------------CTTTHHHHHHHTTCHHHHHHHHHTTTC
T ss_pred             CccchhHHHHHHHHHHhCCHHHHHHHHcC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhcc
Confidence            23355566666666666666666555532       3333                          45566666666666


Q ss_pred             HHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589          138 LDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       138 ~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      +++|.+.++++       .++.+|..++.+|+..|+++
T Consensus       164 yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~  194 (449)
T 1b89_A          164 YQAAVDGARKA-------NSTRTWKEVCFACVDGKEFR  194 (449)
T ss_dssp             HHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHH
Confidence            66666666655       25678899999998888764

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.23  E-value=5.1e-12  Score=96.49  Aligned_cols=151  Identities=10%  Similarity=0.015  Sum_probs=73.6

Q ss_pred             CCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCC--CCCC--------C------CCCCCCCcHHHHHHHHHHHHhcCCh
Q 036589            4 AKPTSPFRLASLLHLQKHPKLALQLFKNPNPNAN--DTEA--------P------PLKPFRYNLLHYDLIITKLGRAKMF   67 (176)
Q Consensus         4 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~--------~------~~~~~~~~~~~y~~li~~~~~~g~~   67 (176)
                      +++..|..++..+.+.|++++|+.+++...+...  ....        .      ..---.|+..+|..+...|...|++
T Consensus        59 ~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~y  138 (449)
T 1b89_A           59 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMY  138 (449)
T ss_dssp             --------------------------------------------------CHHHHTTTTTCC----------------CT
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCH
Confidence            4555666666666666666666665555421100  0000        0      0000013555778888888888888


Q ss_pred             HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHH
Q 036589           68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFIS  147 (176)
Q Consensus        68 ~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~  147 (176)
                      ++|...|..+          ..|..+..++.+.|++++|++.++++      .++.+|..++.+|...|+++.|......
T Consensus       139 eeA~~~Y~~a----------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~  202 (449)
T 1b89_A          139 DAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH  202 (449)
T ss_dssp             TTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT
T ss_pred             HHHHHHHHHh----------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH
Confidence            8888888766          36788999999999999999999988      2789999999999999999999777665


Q ss_pred             HHhccccccchHHHHHHHHHhhccccCCC
Q 036589          148 FNLKAIAVLDGLCSNLKIIMNDSQVRVTG  176 (176)
Q Consensus       148 m~~~~~~~p~~~t~~~li~~~~~~g~~~~  176 (176)
                      +.   .. |+.  ...++..|.+.|++++
T Consensus       203 L~---~~-ad~--l~~lv~~Yek~G~~eE  225 (449)
T 1b89_A          203 IV---VH-ADE--LEELINYYQDRGYFEE  225 (449)
T ss_dssp             TT---TC-HHH--HHHHHHHHHHTTCHHH
T ss_pred             HH---hC-Hhh--HHHHHHHHHHCCCHHH
Confidence            33   22 554  4469999999998763

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.22  E-value=3.1e-10  Score=82.69  Aligned_cols=154  Identities=5%  Similarity=-0.122  Sum_probs=101.4

Q ss_pred             CCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCCC
Q 036589            6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAK-MFDEMQQILHQLKHDTRVI   84 (176)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~~g~~   84 (176)
                      ...+..+...+.+.|++++|..+|+++. ..          .+.+...|..+...+...| ++++|...|++..+. . +
T Consensus        56 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~----------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~-~-~  122 (330)
T 3hym_B           56 ASCLPVHIGTLVELNKANELFYLSHKLV-DL----------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL-E-K  122 (330)
T ss_dssp             TTTHHHHHHHHHHHTCHHHHHHHHHHHH-HH----------CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT-C-T
T ss_pred             hhhHHHHHHHHHHhhhHHHHHHHHHHHH-Hh----------CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-C-C
Confidence            3445556666666677777777666652 21          1224556667777777777 777777777777755 1 2


Q ss_pred             CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHH
Q 036589           85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLK  164 (176)
Q Consensus        85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~l  164 (176)
                      .+...|..+...+...|++++|++.|++..+.. +.+...+..+...|...|++++|.+.|++..+....  +...+..+
T Consensus       123 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~l  199 (330)
T 3hym_B          123 TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE--DPFVMHEV  199 (330)
T ss_dssp             TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT--CHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC--ChHHHHHH
Confidence            245566777777777777777777777776543 223455666777777788888888888777766543  56777777


Q ss_pred             HHHhhccccCC
Q 036589          165 IIMNDSQVRVT  175 (176)
Q Consensus       165 i~~~~~~g~~~  175 (176)
                      ...|...|+++
T Consensus       200 ~~~~~~~~~~~  210 (330)
T 3hym_B          200 GVVAFQNGEWK  210 (330)
T ss_dssp             HHHHHHTTCHH
T ss_pred             HHHHHHcccHH
Confidence            77777777653

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.17  E-value=2.7e-10  Score=80.19  Aligned_cols=154  Identities=6%  Similarity=0.011  Sum_probs=126.7

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC-CCCc
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR-VIPE   86 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g-~~~~   86 (176)
                      .+..+-..+.+.|++++|+..|+.. ...         .  .+...|..+..++...|++++|...+++..+... ..++
T Consensus         7 ~~~~~g~~~~~~~~~~~A~~~~~~a-~~~---------~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   74 (258)
T 3uq3_A            7 KEKAEGNKFYKARQFDEAIEHYNKA-WEL---------H--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRAD   74 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH-HHH---------S--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHH-HHh---------h--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccc
Confidence            4677888999999999999999998 331         1  5778999999999999999999999999887511 1112


Q ss_pred             ----hHHHHHHHHHHHhccCHHHHHHHHHhcccCC------------------------C-CccHhHHHHHHHHHHhcCc
Q 036589           87 ----EIIFCNVISFYGRARLLEHALQVFDEMPSFN------------------------V-QRTVKSLNTLLNALLTCGK  137 (176)
Q Consensus        87 ----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------------------------~-~p~~~~~~~ll~~~~~~g~  137 (176)
                          ...+..+...|.+.|++++|+..|++..+..                        . +.+...+..+...+...|+
T Consensus        75 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           75 YKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcC
Confidence                5788899999999999999999999887631                        1 2345678888899999999


Q ss_pred             HHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589          138 LDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       138 ~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      +++|.+.|++..+....  +..+|..+...|.+.|+++
T Consensus       155 ~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~  190 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRAPE--DARGYSNRAAALAKLMSFP  190 (258)
T ss_dssp             HHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHhCCHH
Confidence            99999999999887654  7888999999999988764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.16  E-value=3.1e-10  Score=82.65  Aligned_cols=145  Identities=7%  Similarity=0.012  Sum_probs=122.1

Q ss_pred             HHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHH
Q 036589           16 LHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVIS   95 (176)
Q Consensus        16 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~   95 (176)
                      +...|++++|.+.|+++. ..          .+.+...+..+...+.+.|++++|.+.+++..+. . +.+...+..+..
T Consensus       148 ~~~~~~~~~A~~~~~~~~-~~----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~  214 (327)
T 3cv0_A          148 FAAPNEYRECRTLLHAAL-EM----------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL-R-PDDAQLWNKLGA  214 (327)
T ss_dssp             TTSHHHHHHHHHHHHHHH-HH----------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHH-hh----------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-C-CCcHHHHHHHHH
Confidence            778899999999999972 21          1236889999999999999999999999999876 2 345678899999


Q ss_pred             HHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccc-----------chHHHHHH
Q 036589           96 FYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVL-----------DGLCSNLK  164 (176)
Q Consensus        96 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p-----------~~~t~~~l  164 (176)
                      .|.+.|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.|++..+.... .           +..+|..+
T Consensus       215 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~l  292 (327)
T 3cv0_A          215 TLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG-GTTPTGEASREATRSMWDFF  292 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT-SCC-----CCTHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cccccccchhhcCHHHHHHH
Confidence            9999999999999999987643 346788999999999999999999999998765433 2           57899999


Q ss_pred             HHHhhccccCC
Q 036589          165 IIMNDSQVRVT  175 (176)
Q Consensus       165 i~~~~~~g~~~  175 (176)
                      ..+|.+.|+.+
T Consensus       293 ~~~~~~~g~~~  303 (327)
T 3cv0_A          293 RMLLNVMNRPD  303 (327)
T ss_dssp             HHHHHHTTCHH
T ss_pred             HHHHHhcCCHH
Confidence            99999998864

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.16  E-value=1.4e-09  Score=68.61  Aligned_cols=119  Identities=11%  Similarity=-0.005  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHH
Q 036589           52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA  131 (176)
Q Consensus        52 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~  131 (176)
                      ..|..+...+...|++++|..+++++.+. . ..+...+..+...+...|++++|...|+++.+.. +.+...+..+...
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~   78 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNA   78 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHH
Confidence            35777889999999999999999999876 3 3456778889999999999999999999988654 3467788899999


Q ss_pred             HHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589          132 LLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       132 ~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      +...|++++|.++|+++.+....  +..++..+...|.+.|+++
T Consensus        79 ~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~  120 (136)
T 2fo7_A           79 YYKQGDYDEAIEYYQKALELDPR--SAEAWYNLGNAYYKQGDYD  120 (136)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTTTCHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHccHH
Confidence            99999999999999999886543  6778888999999888764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.14  E-value=1.8e-08  Score=71.67  Aligned_cols=156  Identities=10%  Similarity=-0.055  Sum_probs=117.7

Q ss_pred             CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589            5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI   84 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~   84 (176)
                      ++..+..+...|.+.|++++|++.|+......        .........|..+...+...|++++|...|++..+..  +
T Consensus        36 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~  105 (272)
T 3u4t_A           36 SPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--------NATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--T  105 (272)
T ss_dssp             CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--------CTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--T
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--------CchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--c
Confidence            45588888899999999999999999873311        1222235568889999999999999999999988762  2


Q ss_pred             CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHH
Q 036589           85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLK  164 (176)
Q Consensus        85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~l  164 (176)
                      -+...+..+...|...|++++|+..|++..+.. +.+...|..+...+...+++++|.+.|++..+....  +...+..+
T Consensus       106 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~~  182 (272)
T 3u4t_A          106 TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPN--IYIGYLWR  182 (272)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc--chHHHHHH
Confidence            355788889999999999999999999988663 335566666663444556999999999998876554  46677777


Q ss_pred             HHHhhcccc
Q 036589          165 IIMNDSQVR  173 (176)
Q Consensus       165 i~~~~~~g~  173 (176)
                      ...+...|+
T Consensus       183 ~~~~~~~~~  191 (272)
T 3u4t_A          183 ARANAAQDP  191 (272)
T ss_dssp             HHHHHHHST
T ss_pred             HHHHHHcCc
Confidence            777766665

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.13  E-value=1.1e-09  Score=73.15  Aligned_cols=134  Identities=8%  Similarity=-0.016  Sum_probs=113.1

Q ss_pred             CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589            5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI   84 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~   84 (176)
                      ++..+..+...+...|++++|...|+.. ...          .+.+...|..+...+...|++++|.+.+++..+.  ..
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~-~~~----------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~  107 (186)
T 3as5_A           41 DVDVALHLGIAYVKTGAVDRGTELLERS-LAD----------APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--NP  107 (186)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHH-HHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CT
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHH-Hhc----------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--Cc
Confidence            3446778888999999999999999997 221          1336788999999999999999999999999876  23


Q ss_pred             CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q 036589           85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA  152 (176)
Q Consensus        85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~  152 (176)
                      .+...+..+...|.+.|++++|...|++..+.. +.+...+..+...+...|++++|.+.+++..+..
T Consensus       108 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  174 (186)
T 3as5_A          108 INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD  174 (186)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            466788889999999999999999999988654 3467889999999999999999999999987653

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.12  E-value=5.3e-09  Score=71.92  Aligned_cols=145  Identities=10%  Similarity=-0.063  Sum_probs=115.9

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~   86 (176)
                      ..+..+-..+...|++++|+..|++. ..             |+...|..+..++.+.|++++|...|++..+. . ..+
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a-~~-------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-~~~   70 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAV-QD-------------PHSRICFNIGCMYTILKNMTEAEKAFTRSINR-D-KHL   70 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTS-SS-------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHH-cC-------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-ccc
Confidence            34556677888999999999999998 22             36789999999999999999999999999876 2 345


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhcccCCC--------------Cc-cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNV--------------QR-TVKSLNTLLNALLTCGKLDRMKELFISFNLK  151 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--------------~p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~  151 (176)
                      ...+..+..+|.+.|++++|++.|++..+..-              .| ....+..+...|.+.|++++|.+.|+...+.
T Consensus        71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            67888899999999999999999998875331              11 2367888999999999999999999999887


Q ss_pred             cccccchHHHHHHHHHh
Q 036589          152 AIAVLDGLCSNLKIIMN  168 (176)
Q Consensus       152 ~~~~p~~~t~~~li~~~  168 (176)
                      ... .....+...+..+
T Consensus       151 ~p~-~~~~~~~~a~~~~  166 (213)
T 1hh8_A          151 KSE-PRHSKIDKAMECV  166 (213)
T ss_dssp             CCS-GGGGHHHHHHHHH
T ss_pred             Ccc-cccchHHHHHHHH
Confidence            655 4444444444444

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.11  E-value=1.2e-09  Score=80.22  Aligned_cols=150  Identities=9%  Similarity=-0.095  Sum_probs=75.9

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC--
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP--   85 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~--   85 (176)
                      .+..+...+.+.|++++|+..|+.. ...          .+.+...|..+..++...|++++|...|++..+.   .|  
T Consensus        39 ~~~~~a~~~~~~~~~~~A~~~~~~~-~~~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~  104 (359)
T 3ieg_A           39 AYYRRATVFLAMGKSKAALPDLTKV-IAL----------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS---NPSE  104 (359)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHH-HHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS---CCCH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHH-HHh----------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCcc
Confidence            4444455555555555555555554 110          0113445555555555555555555555555543   12  


Q ss_pred             --chHHHHHH------------HHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589           86 --EEIIFCNV------------ISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLK  151 (176)
Q Consensus        86 --~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~  151 (176)
                        +...+..+            ...+...|++++|++.|+++.+.. +.+...+..+...+...|++++|.+.+++..+.
T Consensus       105 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  183 (359)
T 3ieg_A          105 QEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL  183 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence              22222222            345555555555555555554322 234455555556666666666666666665554


Q ss_pred             cccccchHHHHHHHHHhhccccC
Q 036589          152 AIAVLDGLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       152 ~~~~p~~~t~~~li~~~~~~g~~  174 (176)
                      ...  +..+|..+...|...|++
T Consensus       184 ~~~--~~~~~~~la~~~~~~~~~  204 (359)
T 3ieg_A          184 KSD--NTEAFYKISTLYYQLGDH  204 (359)
T ss_dssp             CSC--CHHHHHHHHHHHHHHTCH
T ss_pred             CCC--CHHHHHHHHHHHHHcCCH
Confidence            332  455555565555555543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.11  E-value=2.6e-09  Score=78.47  Aligned_cols=152  Identities=11%  Similarity=-0.053  Sum_probs=125.3

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~   86 (176)
                      ..+..+-..+.+.|++++|+..|+++. ..          .+.+...|..+..++...|++++|...+++..+. . +-+
T Consensus         4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l-~~----------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~   70 (359)
T 3ieg_A            4 EKHLELGKKLLAAGQLADALSQFHAAV-DG----------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL-K-MDF   70 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-hh----------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-C-CCc
Confidence            346677888999999999999999972 21          1236789999999999999999999999999976 2 235


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCc----cHhHHHHH------------HHHHHhcCcHHHHHHHHHHHHh
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR----TVKSLNTL------------LNALLTCGKLDRMKELFISFNL  150 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p----~~~~~~~l------------l~~~~~~g~~~~a~~l~~~m~~  150 (176)
                      ...+..+..+|...|++++|+..|++..+..  |    +...+..+            ...+...|++++|.++|+++.+
T Consensus        71 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  148 (359)
T 3ieg_A           71 TAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE  148 (359)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            5788899999999999999999999998654  4    44444444            5788999999999999999988


Q ss_pred             ccccccchHHHHHHHHHhhccccCC
Q 036589          151 KAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       151 ~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      ....  +...+..+...|...|+++
T Consensus       149 ~~~~--~~~~~~~~~~~~~~~~~~~  171 (359)
T 3ieg_A          149 VCVW--DAELRELRAECFIKEGEPR  171 (359)
T ss_dssp             HCTT--CHHHHHHHHHHHHHTTCHH
T ss_pred             hCCC--chHHHHHHHHHHHHCCCHH
Confidence            7654  7788999999999888764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.11  E-value=4.3e-09  Score=76.49  Aligned_cols=155  Identities=8%  Similarity=-0.148  Sum_probs=93.4

Q ss_pred             CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589            5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI   84 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~   84 (176)
                      +...+..+...+.+.|++++|..+|+++. ..          .+.+...|..+..++...|++++|...++++.+. . +
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~-~~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~-~   86 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVC-QA----------APEREEAWRSLGLTQAENEKDGLAIIALNHARML-D-P   86 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHH-HH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-T
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHH-Hh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-c
Confidence            34456667777777788888877777762 21          1225666777777777777777777777777665 1 2


Q ss_pred             CchHHHHHHHHHHHhccCHHHHHHHHHhcccCC-------------------------C---------------------
Q 036589           85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFN-------------------------V---------------------  118 (176)
Q Consensus        85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-------------------------~---------------------  118 (176)
                      .+...+..+...|...|++++|++.|++..+..                         .                     
T Consensus        87 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  166 (327)
T 3cv0_A           87 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE  166 (327)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh
Confidence            345556666666666666666666665544211                         0                     


Q ss_pred             --CccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccC
Q 036589          119 --QRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       119 --~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~  174 (176)
                        +.+...+..+...+.+.|++++|.+++++..+....  +..+|..+...|...|++
T Consensus       167 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~  222 (327)
T 3cv0_A          167 MNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD--DAQLWNKLGATLANGNRP  222 (327)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCH
T ss_pred             hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCH
Confidence              113445555566666666666666666666554332  455566666666655554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.08  E-value=6.4e-10  Score=86.33  Aligned_cols=152  Identities=8%  Similarity=-0.067  Sum_probs=127.7

Q ss_pred             CCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhc---------CChHHHHHHHHH
Q 036589            6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRA---------KMFDEMQQILHQ   76 (176)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~---------g~~~~a~~~~~~   76 (176)
                      +..|..+-..|.+.|++++|.+.|++. ..           ..|+...|..+...+...         |++++|.+.|++
T Consensus       137 ~~a~~~lg~~~~~~g~~~~A~~~~~~a-l~-----------~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~  204 (474)
T 4abn_A          137 VEAWNQLGEVYWKKGDVTSAHTCFSGA-LT-----------HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKL  204 (474)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHH-HT-----------TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH-Hh-----------hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHH
Confidence            457888899999999999999999998 33           235678899999999999         999999999999


Q ss_pred             HhhcCCCCCchHHHHHHHHHHHhc--------cCHHHHHHHHHhcccCCCC---ccHhHHHHHHHHHHhcCcHHHHHHHH
Q 036589           77 LKHDTRVIPEEIIFCNVISFYGRA--------RLLEHALQVFDEMPSFNVQ---RTVKSLNTLLNALLTCGKLDRMKELF  145 (176)
Q Consensus        77 m~~~~g~~~~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~g~~~~a~~l~  145 (176)
                      ..+. . .-+...|..+..+|...        |++++|+..|++..+.. +   -+...|..+-..|...|++++|.+.|
T Consensus       205 al~~-~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~  281 (474)
T 4abn_A          205 AVQM-D-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGF  281 (474)
T ss_dssp             HHHH-C-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHh-C-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9977 2 34577888899999999        99999999999988653 2   37888999999999999999999999


Q ss_pred             HHHHhccccccchHHHHHHHHHhhccccC
Q 036589          146 ISFNLKAIAVLDGLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       146 ~~m~~~~~~~p~~~t~~~li~~~~~~g~~  174 (176)
                      ++..+....  +...+..+...+...|++
T Consensus       282 ~~al~l~p~--~~~a~~~l~~~~~~lg~~  308 (474)
T 4abn_A          282 SQAAALDPA--WPEPQQREQQLLEFLSRL  308 (474)
T ss_dssp             HHHHHHCTT--CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCC--CHHHHHHHHHHHHHHHHH
Confidence            999887654  566777777777766654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.07  E-value=1.8e-09  Score=83.93  Aligned_cols=151  Identities=13%  Similarity=0.047  Sum_probs=126.1

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      .+..+-..+...|++++|.+.|+.. ..           ..|+...|..+...+...|++++|...+++..+. . ..+.
T Consensus       245 ~~~~~g~~~~~~~~~~~A~~~~~~~-~~-----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~  310 (537)
T 3fp2_A          245 ALCYTGIFHFLKNNLLDAQVLLQES-IN-----------LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDL-N-PEYP  310 (537)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH-HH-----------HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH-C-TTCH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHH-Hh-----------cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc-C-CCCH
Confidence            3556667888899999999999998 22           2345788888999999999999999999999876 2 3456


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHH
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIM  167 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~  167 (176)
                      .++..+...|...|++++|+..|++..+.. +.+...+..+...+...|++++|.++|++..+....  +...|..+...
T Consensus       311 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~  387 (537)
T 3fp2_A          311 PTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT--LPEVPTFFAEI  387 (537)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHH
Confidence            788899999999999999999999988654 335678889999999999999999999999887654  67788899999


Q ss_pred             hhccccCC
Q 036589          168 NDSQVRVT  175 (176)
Q Consensus       168 ~~~~g~~~  175 (176)
                      |...|+++
T Consensus       388 ~~~~g~~~  395 (537)
T 3fp2_A          388 LTDRGDFD  395 (537)
T ss_dssp             HHHTTCHH
T ss_pred             HHHhCCHH
Confidence            98888764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.07  E-value=2.1e-08  Score=63.38  Aligned_cols=124  Identities=8%  Similarity=-0.063  Sum_probs=102.8

Q ss_pred             CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhH
Q 036589           45 KPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKS  124 (176)
Q Consensus        45 ~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~  124 (176)
                      ...+.+...|..+...+...|++++|...|++..+.  ...+...+..+..+|...|++++|+..|++..+.. +.+...
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~   86 (133)
T 2lni_A           10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKG   86 (133)
T ss_dssp             CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHH
Confidence            444567889999999999999999999999999876  23367788889999999999999999999988643 346788


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhcccc
Q 036589          125 LNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVR  173 (176)
Q Consensus       125 ~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~  173 (176)
                      +..+...+.+.|++++|.+.|++..+....  +...+..+...+.+.|+
T Consensus        87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           87 YTRKAAALEAMKDYTKAMDVYQKALDLDSS--CKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCGG--GTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhCCC--chHHHHHHHHHHHHhcC
Confidence            889999999999999999999999876554  56677777777766553

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.07  E-value=1.5e-09  Score=78.41  Aligned_cols=166  Identities=11%  Similarity=0.014  Sum_probs=125.5

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc------
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD------   80 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~------   80 (176)
                      .++..+...+...|++++|..+|+++.....   .......+.....+..+...+...|++++|...+++....      
T Consensus        28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  104 (311)
T 3nf1_A           28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLE---KTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG  104 (311)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---HHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---HHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence            3577788899999999999999998722000   0000012335678889999999999999999999998764      


Q ss_pred             CCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccC------CC-CccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc--
Q 036589           81 TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF------NV-QRTVKSLNTLLNALLTCGKLDRMKELFISFNLK--  151 (176)
Q Consensus        81 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~-~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~--  151 (176)
                      .........+..+...|...|++++|+..|++..+.      +. ......+..+...+...|++++|.++|++..+.  
T Consensus       105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  184 (311)
T 3nf1_A          105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ  184 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            123345678888999999999999999999988753      22 234567888899999999999999999998764  


Q ss_pred             ----cccccchHHHHHHHHHhhccccCC
Q 036589          152 ----AIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       152 ----~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                          +.......++..+...|...|+++
T Consensus       185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~  212 (311)
T 3nf1_A          185 TKLGPDDPNVAKTKNNLASCYLKQGKFK  212 (311)
T ss_dssp             HTSCTTCHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHcCCHH
Confidence                212034668888999999888764

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.06  E-value=7.6e-10  Score=85.43  Aligned_cols=154  Identities=10%  Similarity=0.030  Sum_probs=92.7

Q ss_pred             CCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 036589            6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP   85 (176)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~   85 (176)
                      +..+..+...+...|++++|+..|++. ...          .+.+...|..+...+...|++++|...++++.+.  ...
T Consensus       304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~  370 (514)
T 2gw1_A          304 SSVYYHRGQMNFILQNYDQAGKDFDKA-KEL----------DPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPE  370 (514)
T ss_dssp             THHHHHHHHHHHHTTCTTHHHHHHHHH-HHT----------CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STT
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHH-HHh----------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--ccc
Confidence            345556666666666777776666665 211          1113456666666666777777777777766654  122


Q ss_pred             chHHHHHHHHHHHhccCHHHHHHHHHhcccCCC-Ccc----HhHHHHHHHHHHh---cCcHHHHHHHHHHHHhccccccc
Q 036589           86 EEIIFCNVISFYGRARLLEHALQVFDEMPSFNV-QRT----VKSLNTLLNALLT---CGKLDRMKELFISFNLKAIAVLD  157 (176)
Q Consensus        86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~---~g~~~~a~~l~~~m~~~~~~~p~  157 (176)
                      +...+..+...|.+.|++++|+..|+++.+..- .++    ...+..+...+..   .|++++|.+.|+...+....  +
T Consensus       371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~  448 (514)
T 2gw1_A          371 APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR--S  448 (514)
T ss_dssp             CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT--C
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc--c
Confidence            345566666777777777777777766653210 011    2266666677777   77777777777776665432  5


Q ss_pred             hHHHHHHHHHhhccccC
Q 036589          158 GLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       158 ~~t~~~li~~~~~~g~~  174 (176)
                      ..++..+...|.+.|++
T Consensus       449 ~~~~~~la~~~~~~g~~  465 (514)
T 2gw1_A          449 EQAKIGLAQMKLQQEDI  465 (514)
T ss_dssp             HHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhcCH
Confidence            56666666777666654

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.05  E-value=7.9e-10  Score=85.84  Aligned_cols=154  Identities=6%  Similarity=-0.064  Sum_probs=129.7

Q ss_pred             CCCCHHHHHHHHHhccCh-hHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036589            5 KPTSPFRLASLLHLQKHP-KLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV   83 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~   83 (176)
                      +...+..+-..+...|++ ++|++.|++....           .+-+...|..+..+|.+.|++++|.+.|++..+.   
T Consensus       101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~-----------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---  166 (474)
T 4abn_A          101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKL-----------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH---  166 (474)
T ss_dssp             CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---
T ss_pred             hHHHHHHHHHHHHhccccHHHHHHHHHHHHhh-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Confidence            344667778889999999 9999999997222           1226789999999999999999999999999976   


Q ss_pred             CCchHHHHHHHHHHHhc---------cCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhc--------CcHHHHHHHHH
Q 036589           84 IPEEIIFCNVISFYGRA---------RLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTC--------GKLDRMKELFI  146 (176)
Q Consensus        84 ~~~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--------g~~~~a~~l~~  146 (176)
                      .|+...+..+...|...         |++++|++.|++..+.. +-+...|..+...|...        |++++|.+.|+
T Consensus       167 ~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~  245 (474)
T 4abn_A          167 CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYA  245 (474)
T ss_dssp             CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence            46678889999999999         99999999999988654 34678899999999988        99999999999


Q ss_pred             HHHhccc---cccchHHHHHHHHHhhccccCC
Q 036589          147 SFNLKAI---AVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       147 ~m~~~~~---~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      +..+...   .  +...|..+-.+|...|+++
T Consensus       246 ~al~~~p~~~~--~~~~~~~lg~~~~~~g~~~  275 (474)
T 4abn_A          246 QAEKVDRKASS--NPDLHLNRATLHKYEESYG  275 (474)
T ss_dssp             HHHHHCGGGGG--CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhCCCccc--CHHHHHHHHHHHHHcCCHH
Confidence            9987644   3  7888999999999988864

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.05  E-value=1.7e-08  Score=62.86  Aligned_cols=117  Identities=10%  Similarity=0.032  Sum_probs=96.5

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL  129 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  129 (176)
                      +...|..+...+...|++++|.+.++++.+. . ..+...+..+...+.+.|++++|+..|+++.+.. +.+...+..+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la   84 (125)
T 1na0_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLG   84 (125)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-C-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHH
Confidence            4678888999999999999999999999876 2 3456788889999999999999999999988643 34678889999


Q ss_pred             HHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhcc
Q 036589          130 NALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQ  171 (176)
Q Consensus       130 ~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~  171 (176)
                      ..+...|++++|.+.|+++.+....  +...+..+-..+...
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           85 NAYYKQGDYDEAIEYYQKALELDPN--NAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhc
Confidence            9999999999999999999876554  555666665555443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.04  E-value=1.1e-09  Score=84.55  Aligned_cols=152  Identities=11%  Similarity=-0.004  Sum_probs=117.3

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~   86 (176)
                      ..+..+...+...|++++|...|+.+ ...           .|+...|..+..++...|++++|...+++..+.  ...+
T Consensus       238 ~~~~~~~~~~~~~~~~~~A~~~~~~~-l~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~  303 (514)
T 2gw1_A          238 ISLEHTGIFKFLKNDPLGAHEDIKKA-IEL-----------FPRVNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNN  303 (514)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHH-HHH-----------CCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHH-Hhh-----------CccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCC
Confidence            35667778888899999999999987 221           123777888888888899999999988888865  2335


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHH
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKII  166 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~  166 (176)
                      ...+..+...|...|++++|+..|++..+.. +.+...+..+...+...|++++|.++|+++.+....  +..+|..+..
T Consensus       304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~  380 (514)
T 2gw1_A          304 SSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE--APEVPNFFAE  380 (514)
T ss_dssp             THHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT--CSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc--CHHHHHHHHH
Confidence            5677888888888999999999888887543 235667888888888888999999888888776443  5677888888


Q ss_pred             HhhccccCC
Q 036589          167 MNDSQVRVT  175 (176)
Q Consensus       167 ~~~~~g~~~  175 (176)
                      .|.+.|+++
T Consensus       381 ~~~~~~~~~  389 (514)
T 2gw1_A          381 ILTDKNDFD  389 (514)
T ss_dssp             HHHHTTCHH
T ss_pred             HHHHCCCHH
Confidence            888877754

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.04  E-value=1.4e-09  Score=77.34  Aligned_cols=142  Identities=13%  Similarity=0.041  Sum_probs=108.8

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-----
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT-----   81 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~-----   81 (176)
                      .++..+-..|...|++++|+..|++......   .......+....+|..+...|...|++++|...+++.....     
T Consensus        44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  120 (283)
T 3edt_B           44 TMLNILALVYRDQNKYKEAAHLLNDALAIRE---KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG  120 (283)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---HHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHH---HHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC
Confidence            3577888999999999999999998721100   00001123356789999999999999999999999987641     


Q ss_pred             -CCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccC------C-CCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589           82 -RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF------N-VQRTVKSLNTLLNALLTCGKLDRMKELFISFNLK  151 (176)
Q Consensus        82 -g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~-~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~  151 (176)
                       .......++..+...|...|++++|+..|++..+.      + ......++..+...|...|++++|.++|++..+.
T Consensus       121 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          121 KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence             12345678888999999999999999999988754      1 1224577889999999999999999999988753

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.03  E-value=1.8e-08  Score=63.24  Aligned_cols=123  Identities=10%  Similarity=-0.007  Sum_probs=104.1

Q ss_pred             CCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHH
Q 036589           48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT  127 (176)
Q Consensus        48 ~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  127 (176)
                      +.+...|..+...+...|++++|...+++.... . ..+...+..+..++...|++++|+..+++..+.. +.+...+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~   85 (131)
T 2vyi_A            9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL-N-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGR   85 (131)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-C-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHH
Confidence            346778888999999999999999999999876 2 3356788889999999999999999999988643 345778889


Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589          128 LLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       128 ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      +...+.+.|++++|.+.|++..+....  +...+..+...+.+.|+++
T Consensus        86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A           86 MGLALSSLNKHVEAVAYYKKALELDPD--NETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCcc--chHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999887554  6778888889998888764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.03  E-value=1.5e-09  Score=71.32  Aligned_cols=144  Identities=9%  Similarity=-0.022  Sum_probs=112.6

Q ss_pred             HHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHH
Q 036589           14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNV   93 (176)
Q Consensus        14 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~l   93 (176)
                      ..+...|++++|+..|+... .          ..+-+...+-.+...|.+.|++++|.+.|++..+..  +-+...|..+
T Consensus         5 ~~~~~~~~~e~ai~~~~~a~-~----------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l   71 (150)
T 4ga2_A            5 SMRRSKADVERYIASVQGST-P----------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFL   71 (150)
T ss_dssp             --CCCHHHHHHHHHHHHHHS-C----------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHHhc-c----------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence            34556789999999999872 2          112234456678899999999999999999998762  3367788999


Q ss_pred             HHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHH-HHHHHhccccccchHHHHHHHHHhhccc
Q 036589           94 ISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKEL-FISFNLKAIAVLDGLCSNLKIIMNDSQV  172 (176)
Q Consensus        94 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l-~~~m~~~~~~~p~~~t~~~li~~~~~~g  172 (176)
                      -.+|.+.|++++|+..|++..+.. +-+...|..+...|.+.|++++|.+. +++..+..+.  +..+|...-..+.+.|
T Consensus        72 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~--~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           72 GLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG--SPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT--CHHHHHHHHHHHHTCC
T ss_pred             HHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC--CHHHHHHHHHHHHHhC
Confidence            999999999999999999988654 23577899999999999999877765 5777776554  6777888877777776


Q ss_pred             c
Q 036589          173 R  173 (176)
Q Consensus       173 ~  173 (176)
                      +
T Consensus       149 ~  149 (150)
T 4ga2_A          149 E  149 (150)
T ss_dssp             C
T ss_pred             c
Confidence            4

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.03  E-value=5.8e-09  Score=72.68  Aligned_cols=153  Identities=6%  Similarity=-0.090  Sum_probs=120.6

Q ss_pred             CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589            5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI   84 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~   84 (176)
                      ++..+...-..+.+.|++++|+..|+......        +  +++...+..+..++...|++++|...|++..+. . +
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--------~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~-p   73 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT--------N--NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK-N-Y   73 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------T--TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-T-C
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc--------C--CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh-C-c
Confidence            44567777888999999999999999872221        1  146777777999999999999999999999976 2 2


Q ss_pred             CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccH-------hHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccc
Q 036589           85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV-------KSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLD  157 (176)
Q Consensus        85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-------~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~  157 (176)
                      -+...|..+..+|...|++++|+..|++..+.. +.+.       ..|..+-..+...|++++|.+.|++..+..   |+
T Consensus        74 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---p~  149 (228)
T 4i17_A           74 NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT---SK  149 (228)
T ss_dssp             SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS---CH
T ss_pred             chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC---CC
Confidence            366788889999999999999999999988543 2233       457778888899999999999999988752   44


Q ss_pred             ---hHHHHHHHHHhhcccc
Q 036589          158 ---GLCSNLKIIMNDSQVR  173 (176)
Q Consensus       158 ---~~t~~~li~~~~~~g~  173 (176)
                         ...|..+-..|...|+
T Consensus       150 ~~~~~~~~~l~~~~~~~~~  168 (228)
T 4i17_A          150 KWKTDALYSLGVLFYNNGA  168 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHH
Confidence               5677777777665554

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.01  E-value=2.1e-09  Score=77.67  Aligned_cols=140  Identities=13%  Similarity=0.045  Sum_probs=107.2

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC------
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT------   81 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~------   81 (176)
                      .+..+...|...|++++|...|++......   .......+.....|..+...+...|++++|...+++..+..      
T Consensus        71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  147 (311)
T 3nf1_A           71 MLNILALVYRDQNKYKDAANLLNDALAIRE---KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK  147 (311)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH---HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC
Confidence            467788889999999999999988721100   00001113356788999999999999999999999988651      


Q ss_pred             CCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccC------CCCc-cHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589           82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF------NVQR-TVKSLNTLLNALLTCGKLDRMKELFISFNL  150 (176)
Q Consensus        82 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~  150 (176)
                      ........+..+...|...|++++|++.|++..+.      +..| ...++..+...|...|++++|.+.|++..+
T Consensus       148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          148 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            22335567888999999999999999999988753      2123 456788899999999999999999999875

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.01  E-value=7.8e-09  Score=73.49  Aligned_cols=129  Identities=10%  Similarity=-0.136  Sum_probs=82.0

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~   86 (176)
                      ..+..+...+...|++++|+..|++.. ..          .+.+...|..+...+...|++++|...|++..+. . +.+
T Consensus        44 ~~~~~l~~~~~~~~~~~~A~~~~~~al-~~----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~-~~~  110 (275)
T 1xnf_A           44 QLLYERGVLYDSLGLRALARNDFSQAL-AI----------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-D-PTY  110 (275)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HH----------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTC
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHH-Hc----------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-C-ccc
Confidence            345666777777777777777777762 21          1225667777777777777777777777777765 1 224


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL  150 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~  150 (176)
                      ...+..+..+|.+.|++++|...|+++.+..  |+.......+..+...|++++|...+.+...
T Consensus       111 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  172 (275)
T 1xnf_A          111 NYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE  172 (275)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            5666777777777777777777777776432  4444444444444555666666666655443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.01  E-value=7.4e-09  Score=73.63  Aligned_cols=150  Identities=9%  Similarity=-0.015  Sum_probs=117.5

Q ss_pred             CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589            5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI   84 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~   84 (176)
                      |+..+...-..+...|++++|+..|++.....           +.+...|..+..++...|++++|...+++..+. +..
T Consensus         2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~   69 (272)
T 3u4t_A            2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-----------YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK-VNA   69 (272)
T ss_dssp             ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-----------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT-SCT
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-cCc
Confidence            34566777889999999999999999972221           124457888899999999999999999999985 432


Q ss_pred             Cc--hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHH
Q 036589           85 PE--EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSN  162 (176)
Q Consensus        85 ~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~  162 (176)
                      ++  ...|..+...|...|++++|+..|++..+.. +.+...|..+...|...|++++|.+.|++..+....  +...|.
T Consensus        70 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~  146 (272)
T 3u4t_A           70 TKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT--DPKVFY  146 (272)
T ss_dssp             TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC--CHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC--cHHHHH
Confidence            32  3458889999999999999999999988643 336678999999999999999999999998877443  566666


Q ss_pred             HHH-HHhh
Q 036589          163 LKI-IMND  169 (176)
Q Consensus       163 ~li-~~~~  169 (176)
                      .+. ..|.
T Consensus       147 ~l~~~~~~  154 (272)
T 3u4t_A          147 ELGQAYYY  154 (272)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            666 4443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.00  E-value=7.1e-09  Score=75.84  Aligned_cols=153  Identities=8%  Similarity=0.010  Sum_probs=116.5

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCC-cHH-HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRY-NLL-HYDLIITKLGRAKMFDEMQQILHQLKHDTRVI   84 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~   84 (176)
                      ..|..+...+.+.|++++|.++|++.. ..           .| +.. .|..+...+.+.|++++|..+|++..+. . .
T Consensus       100 ~~~~~~~~~~~~~~~~~~A~~~~~~al-~~-----------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~-p  165 (308)
T 2ond_A          100 LLYFAYADYEESRMKYEKVHSIYNRLL-AI-----------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-A-R  165 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-TS-----------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-T-T
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHH-hc-----------cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C-C
Confidence            368888999999999999999999972 21           22 233 7888999999999999999999999876 2 2


Q ss_pred             CchHHHHHHHHHHH-hccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-cccc--chHH
Q 036589           85 PEEIIFCNVISFYG-RARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA-IAVL--DGLC  160 (176)
Q Consensus        85 ~~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~-~~~p--~~~t  160 (176)
                      .+...|........ ..|++++|..+|+...+.. +-+...|..++..+.+.|++++|..+|++..+.. ++ |  ....
T Consensus       166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~-p~~~~~l  243 (308)
T 2ond_A          166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP-PEKSGEI  243 (308)
T ss_dssp             CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC-GGGCHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCC-HHHHHHH
Confidence            33444443333322 3699999999999887532 2367888899999999999999999999998863 44 5  3667


Q ss_pred             HHHHHHHhhccccCC
Q 036589          161 SNLKIIMNDSQVRVT  175 (176)
Q Consensus       161 ~~~li~~~~~~g~~~  175 (176)
                      |..++..+.+.|+.+
T Consensus       244 ~~~~~~~~~~~g~~~  258 (308)
T 2ond_A          244 WARFLAFESNIGDLA  258 (308)
T ss_dssp             HHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHHHcCCHH
Confidence            888888887777653

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.99  E-value=4.8e-09  Score=79.40  Aligned_cols=150  Identities=7%  Similarity=0.008  Sum_probs=125.9

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhcCCCCCc
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKM-FDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~-~~~a~~~~~~m~~~~g~~~~   86 (176)
                      .|+.+-..+.+.|++++|++.|++....           .+-+...|+.+..++...|+ +++|...|++..+. . .-+
T Consensus        99 a~~~lg~~~~~~g~~~~Al~~~~~al~l-----------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-~-P~~  165 (382)
T 2h6f_A           99 VYDYFRAVLQRDERSERAFKLTRDAIEL-----------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-Q-PKN  165 (382)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-C-TTC
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHh-----------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-C-CCC
Confidence            4677778888999999999999997221           12368889999999999997 99999999999976 2 236


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHH
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKII  166 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~  166 (176)
                      ...|+.+-.++.+.|++++|+..|++..+.. +-+...|..+-.++.+.|++++|++.|+++.+....  +...|+.+-.
T Consensus       166 ~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~--~~~a~~~lg~  242 (382)
T 2h6f_A          166 YQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR--NNSVWNQRYF  242 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT--CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--CHHHHHHHHH
Confidence            6788899999999999999999999998654 347788999999999999999999999999988775  7888888888


Q ss_pred             Hhhc-ccc
Q 036589          167 MNDS-QVR  173 (176)
Q Consensus       167 ~~~~-~g~  173 (176)
                      ++.+ .|+
T Consensus       243 ~l~~l~~~  250 (382)
T 2h6f_A          243 VISNTTGY  250 (382)
T ss_dssp             HHHHTTCS
T ss_pred             HHHHhcCc
Confidence            8887 454

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.99  E-value=9.4e-09  Score=69.18  Aligned_cols=133  Identities=11%  Similarity=-0.014  Sum_probs=112.0

Q ss_pred             CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589            5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI   84 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~   84 (176)
                      ++..+..+...|.+.|++++|+..++... ..          .+-+...+..+...+...++++.+...+++..+.  .+
T Consensus        38 ~~~~~~~la~~~~~~~~~~~a~~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--~~  104 (184)
T 3vtx_A           38 NVETLLKLGKTYMDIGLPNDAIESLKKFV-VL----------DTTSAEAYYILGSANFMIDEKQAAIDALQRAIAL--NT  104 (184)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH----------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CT
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hc----------CchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--Cc
Confidence            34467788889999999999999999872 21          1236778888889999999999999999998876  23


Q ss_pred             CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589           85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLK  151 (176)
Q Consensus        85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~  151 (176)
                      -+...+..+..+|.+.|++++|++.|++..+.. +.+...|..+-..|.+.|++++|.+.|++..+.
T Consensus       105 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          105 VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence            456778889999999999999999999988654 346788999999999999999999999998874

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.98  E-value=1.4e-08  Score=68.22  Aligned_cols=154  Identities=12%  Similarity=0.031  Sum_probs=115.1

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~   86 (176)
                      ..+..+...+.+.|++++|...|++....           .+-+...|..+..++.+.|++++|...++......   |+
T Consensus         7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~   72 (176)
T 2r5s_A            7 EQLLKQVSELLQQGEHAQALNVIQTLSDE-----------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY---QD   72 (176)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHTSCHH-----------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CC
Confidence            35677788899999999999999998322           13367889999999999999999999999988662   33


Q ss_pred             hHHHHHHHHH-HHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589           87 EIIFCNVISF-YGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI  165 (176)
Q Consensus        87 ~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li  165 (176)
                      ...+..+... +...+...+|+..|++..+.. +-+...+..+-..+...|++++|.+.|++..+......+...+..+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~  151 (176)
T 2r5s_A           73 NSYKSLIAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFM  151 (176)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHH
Confidence            3322222111 122223345788888877543 23578889999999999999999999999988765412467899999


Q ss_pred             HHhhccccCC
Q 036589          166 IMNDSQVRVT  175 (176)
Q Consensus       166 ~~~~~~g~~~  175 (176)
                      ..|...|+.+
T Consensus       152 ~~~~~~g~~~  161 (176)
T 2r5s_A          152 DILSALGQGN  161 (176)
T ss_dssp             HHHHHHCSSC
T ss_pred             HHHHHhCCCC
Confidence            9999999876

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.98  E-value=4.5e-09  Score=74.74  Aligned_cols=128  Identities=10%  Similarity=-0.042  Sum_probs=105.0

Q ss_pred             HHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHH
Q 036589           16 LHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVIS   95 (176)
Q Consensus        16 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~   95 (176)
                      +...|++++|+..|+++....       ....+.+...|..+..++...|++++|...|++..+. . +.+...|..+..
T Consensus        15 ~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~-~~~~~~~~~la~   85 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQILASR-------ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI-R-PDMPEVFNYLGI   85 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSS-------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CCCHHHHHHHHH
T ss_pred             cCccchHHHHHHHHHHHHhcc-------cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc-C-CCcHHHHHHHHH
Confidence            445689999999999983221       0111235778999999999999999999999999977 2 346788999999


Q ss_pred             HHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q 036589           96 FYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI  153 (176)
Q Consensus        96 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~  153 (176)
                      .|...|++++|+..|++..+.. +.+...+..+...|.+.|++++|.+.|+++.+...
T Consensus        86 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  142 (275)
T 1xnf_A           86 YLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP  142 (275)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            9999999999999999988653 33678899999999999999999999999987544

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.91  E-value=6.3e-08  Score=70.75  Aligned_cols=153  Identities=10%  Similarity=-0.006  Sum_probs=115.6

Q ss_pred             CCHHHHHHHHH-------hccCh-------hHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHH
Q 036589            7 TSPFRLASLLH-------LQKHP-------KLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQ   72 (176)
Q Consensus         7 ~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~   72 (176)
                      ..|..+...+.       +.|++       ++|..+|++....-          .+-+...|..++..+.+.|++++|.+
T Consensus        51 ~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~----------~p~~~~~~~~~~~~~~~~~~~~~A~~  120 (308)
T 2ond_A           51 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL----------LKKNMLLYFAYADYEESRMKYEKVHS  120 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT----------TTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh----------CcccHHHHHHHHHHHHhcCCHHHHHH
Confidence            34556666654       35886       89999999973211          12256789999999999999999999


Q ss_pred             HHHHHhhcCCCCCch--HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHH-hcCcHHHHHHHHHHHH
Q 036589           73 ILHQLKHDTRVIPEE--IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL-TCGKLDRMKELFISFN  149 (176)
Q Consensus        73 ~~~~m~~~~g~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~-~~g~~~~a~~l~~~m~  149 (176)
                      +|++..+.   .|+.  ..|..+...+.+.|++++|..+|++..+.. +++...|........ ..|++++|.++|++..
T Consensus       121 ~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al  196 (308)
T 2ond_A          121 IYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGL  196 (308)
T ss_dssp             HHHHHHTS---SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHhc---cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999975   3432  279999999999999999999999998654 234444443333322 3699999999999998


Q ss_pred             hccccccchHHHHHHHHHhhccccCC
Q 036589          150 LKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       150 ~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      +....  +...|..++..+.+.|+++
T Consensus       197 ~~~p~--~~~~~~~~~~~~~~~g~~~  220 (308)
T 2ond_A          197 KKYGD--IPEYVLAYIDYLSHLNEDN  220 (308)
T ss_dssp             HHHTT--CHHHHHHHHHHHHTTCCHH
T ss_pred             HhCCC--cHHHHHHHHHHHHHCCCHH
Confidence            76543  6788999999998888754

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.91  E-value=3e-08  Score=78.36  Aligned_cols=137  Identities=4%  Similarity=-0.115  Sum_probs=101.1

Q ss_pred             ccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHH
Q 036589           19 QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYG   98 (176)
Q Consensus        19 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~   98 (176)
                      .|++++|++.|++.. +.          .+-+...|..+...+.+.|++++|.+.|++..+..  .-+...+..+..+|.
T Consensus         2 ~g~~~~A~~~~~~al-~~----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~   68 (568)
T 2vsy_A            2 TADGPRELLQLRAAV-RH----------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRW   68 (568)
T ss_dssp             ------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHH-Hh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence            478899999999872 21          12367889999999999999999999999998762  335678888999999


Q ss_pred             hccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhcc
Q 036589           99 RARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQ  171 (176)
Q Consensus        99 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~  171 (176)
                      +.|++++|.+.|++..+.. +-+...+..+...|.+.|++++|.+.|++..+....  +...+..+...+...
T Consensus        69 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~  138 (568)
T 2vsy_A           69 TQQRHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE--EPYITAQLLNWRRRL  138 (568)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHT
T ss_pred             HCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHh
Confidence            9999999999999988653 335778999999999999999999999999887654  677888888888888

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.89  E-value=1.2e-08  Score=79.27  Aligned_cols=119  Identities=9%  Similarity=0.013  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCC-----CCccHhHHH
Q 036589           52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFN-----VQRTVKSLN  126 (176)
Q Consensus        52 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~~  126 (176)
                      ..|..+..++...|++++|...+++..+.  ...+...+..+...|.+.|++++|++.|++..+..     .......+.
T Consensus       345 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  422 (537)
T 3fp2_A          345 YPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLI  422 (537)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence            34444444444444444444444444433  11223344444444444445444444444443211     000111122


Q ss_pred             HHHHHHHhc----------CcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccC
Q 036589          127 TLLNALLTC----------GKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       127 ~ll~~~~~~----------g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~  174 (176)
                      .+...+.+.          |++++|...|++..+....  +...|..+...|.+.|++
T Consensus       423 ~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~l~~~~~~~g~~  478 (537)
T 3fp2_A          423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR--SEQAKIGLAQLKLQMEKI  478 (537)
T ss_dssp             HHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhccH
Confidence            222333333          5555555555554443332  445566666666666554

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.89  E-value=3.4e-08  Score=70.28  Aligned_cols=155  Identities=7%  Similarity=-0.116  Sum_probs=115.4

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC-
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP-   85 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~-   85 (176)
                      ..+..+-..+.+.|++++|+..|+.+....        +..+.....+..+..++.+.|++++|...|++..+...-.| 
T Consensus        16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~   87 (261)
T 3qky_A           16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYG--------RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR   87 (261)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--------SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence            345566778889999999999999983221        22222267888899999999999999999999998632122 


Q ss_pred             chHHHHHHHHHHHh--------ccCHHHHHHHHHhcccCCCCcc-HhHH-----------------HHHHHHHHhcCcHH
Q 036589           86 EEIIFCNVISFYGR--------ARLLEHALQVFDEMPSFNVQRT-VKSL-----------------NTLLNALLTCGKLD  139 (176)
Q Consensus        86 ~~~~~~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~p~-~~~~-----------------~~ll~~~~~~g~~~  139 (176)
                      ....+..+..++.+        .|++++|+..|++..+..  |+ ....                 ..+...|.+.|+++
T Consensus        88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~  165 (261)
T 3qky_A           88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYE  165 (261)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence            24566778888888        999999999999988543  33 2333                 45578889999999


Q ss_pred             HHHHHHHHHHhcccccc-chHHHHHHHHHhhcc
Q 036589          140 RMKELFISFNLKAIAVL-DGLCSNLKIIMNDSQ  171 (176)
Q Consensus       140 ~a~~l~~~m~~~~~~~p-~~~t~~~li~~~~~~  171 (176)
                      +|...|++..+.....| ....+..+..+|...
T Consensus       166 ~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~  198 (261)
T 3qky_A          166 AAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY  198 (261)
T ss_dssp             HHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence            99999999987544312 345677777777665

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.89  E-value=1.9e-08  Score=73.07  Aligned_cols=152  Identities=12%  Similarity=-0.044  Sum_probs=118.9

Q ss_pred             HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchH
Q 036589            9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEI   88 (176)
Q Consensus         9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~   88 (176)
                      +..+-..+.+.|++++|.+.|++....           .+-+...+..+...+...|++++|...+++....   .|+..
T Consensus       120 ~~~~a~~~~~~g~~~~A~~~~~~al~~-----------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~  185 (287)
T 3qou_A          120 XAQQAMQLMQESNYTDALPLLXDAWQL-----------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTR  185 (287)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHh-----------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchH
Confidence            345566788899999999999997222           1236778888999999999999999999998866   24433


Q ss_pred             HH-HHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHH
Q 036589           89 IF-CNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIM  167 (176)
Q Consensus        89 ~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~  167 (176)
                      .. ......+.+.++.++|+..|++..+.. +.+...+..+-..+...|++++|.+.|.+..+......+...+..+...
T Consensus       186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~  264 (287)
T 3qou_A          186 YQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEI  264 (287)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHH
Confidence            22 223334667788888999998887554 4467889999999999999999999999998876542347889999999


Q ss_pred             hhccccCC
Q 036589          168 NDSQVRVT  175 (176)
Q Consensus       168 ~~~~g~~~  175 (176)
                      |...|+.+
T Consensus       265 ~~~~g~~~  272 (287)
T 3qou_A          265 LAALGTGD  272 (287)
T ss_dssp             HHHHCTTC
T ss_pred             HHHcCCCC
Confidence            99998875

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.88  E-value=5.2e-08  Score=71.38  Aligned_cols=155  Identities=13%  Similarity=0.032  Sum_probs=113.1

Q ss_pred             CCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036589            4 AKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV   83 (176)
Q Consensus         4 p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~   83 (176)
                      ++..+...+-.++...|++++|++++.+.....        + -.-+...+..++..+.+.|+.+.|.+.+++|.+.   
T Consensus        98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~--------~-~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~---  165 (310)
T 3mv2_B           98 NSPYELYLLATAQAILGDLDKSLETCVEGIDND--------E-AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA---  165 (310)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSS--------C-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccC--------C-CcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---
Confidence            445556677888999999999999999861221        1 0237888999999999999999999999999865   


Q ss_pred             CC-----chHHHHHHHHHH--Hhcc--CHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--
Q 036589           84 IP-----EEIIFCNVISFY--GRAR--LLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA--  152 (176)
Q Consensus        84 ~~-----~~~~~~~li~~~--~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~--  152 (176)
                      .|     +..+...|..++  ...|  ++.+|..+|+++.+.  .|+..+-..++.++.+.|++++|.+.++.+.+..  
T Consensus       166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~  243 (310)
T 3mv2_B          166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS  243 (310)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred             CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            45     466666677663  3334  899999999998754  3554455566668999999999999999776531  


Q ss_pred             -------ccccchHHHHHHHHHhhcccc
Q 036589          153 -------IAVLDGLCSNLKIIMNDSQVR  173 (176)
Q Consensus       153 -------~~~p~~~t~~~li~~~~~~g~  173 (176)
                             -+ -+..+.-.+|......|+
T Consensus       244 ~~~k~~~~p-~~~~~LaN~i~l~~~lgk  270 (310)
T 3mv2_B          244 VEQKENAVL-YKPTFLANQITLALMQGL  270 (310)
T ss_dssp             TTTCHHHHS-SHHHHHHHHHHHHHHTTC
T ss_pred             ccccccCCC-CCHHHHHHHHHHHHHhCh
Confidence                   13 466677555544444443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.87  E-value=2e-07  Score=59.29  Aligned_cols=110  Identities=6%  Similarity=-0.010  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHH
Q 036589           51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLN  130 (176)
Q Consensus        51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~  130 (176)
                      ...|......|.+.|++++|...|++..+..  +-+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+-.
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~   89 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAA   89 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHH
Confidence            4578889999999999999999999998762  3467888899999999999999999999988654 346788999999


Q ss_pred             HHHhcCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589          131 ALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI  165 (176)
Q Consensus       131 ~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li  165 (176)
                      +|...|++++|.+.|++..+..+.  +...+..|-
T Consensus        90 ~~~~~~~~~~A~~~~~~al~l~P~--~~~a~~~l~  122 (126)
T 4gco_A           90 CLVAMREWSKAQRAYEDALQVDPS--NEEAREGVR  122 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCcC--CHHHHHHHH
Confidence            999999999999999999886554  455555443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.86  E-value=1.1e-08  Score=72.75  Aligned_cols=156  Identities=11%  Similarity=-0.012  Sum_probs=113.6

Q ss_pred             HHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc------CCCCCchHH
Q 036589           16 LHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD------TRVIPEEII   89 (176)
Q Consensus        16 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~------~g~~~~~~~   89 (176)
                      ....|++++|+.+|++......   .......+....+|..+...+...|++++|...+++..+.      ........+
T Consensus        11 ~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   87 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALEDLE---KTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAAT   87 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHHHH---HHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHH---HhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHH
Confidence            3456777777777766521000   0000112335678999999999999999999999998865      122345678


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHhcccC------C-CCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc------c-ccc
Q 036589           90 FCNVISFYGRARLLEHALQVFDEMPSF------N-VQRTVKSLNTLLNALLTCGKLDRMKELFISFNLK------A-IAV  155 (176)
Q Consensus        90 ~~~li~~~~~~g~~~~a~~~~~~m~~~------~-~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~------~-~~~  155 (176)
                      +..+...|...|++++|++.|++..+.      . .+.....+..+...|...|++++|.++|++..+.      + .+ 
T Consensus        88 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-  166 (283)
T 3edt_B           88 LNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP-  166 (283)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH-
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH-
Confidence            899999999999999999999988753      1 1335677889999999999999999999998765      1 22 


Q ss_pred             cchHHHHHHHHHhhccccCC
Q 036589          156 LDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       156 p~~~t~~~li~~~~~~g~~~  175 (176)
                      ....++..+...|.+.|+++
T Consensus       167 ~~~~~~~~la~~~~~~g~~~  186 (283)
T 3edt_B          167 NVAKTKNNLASCYLKQGKYQ  186 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHcCCHH
Confidence            34678888999998888764

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.86  E-value=1.1e-07  Score=68.00  Aligned_cols=124  Identities=10%  Similarity=-0.041  Sum_probs=77.3

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCC
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGR----AKMFDEMQQILHQLKHDTRV   83 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~~g~   83 (176)
                      .+..+-..+.+.|++++|++.|++. .+.+            +...+..+...|..    .+++++|...|++..+. + 
T Consensus         8 a~~~lg~~~~~~~~~~~A~~~~~~a-~~~~------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~-   72 (273)
T 1ouv_A            8 ELVGLGAKSYKEKDFTQAKKYFEKA-CDLK------------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-N-   72 (273)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH-HHTT------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T-
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHH-HHCC------------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-C-
Confidence            4455556666667777777777665 2211            44556666666666    66777777777666665 3 


Q ss_pred             CCchHHHHHHHHHHHh----ccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHh----cCcHHHHHHHHHHHHhc
Q 036589           84 IPEEIIFCNVISFYGR----ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLT----CGKLDRMKELFISFNLK  151 (176)
Q Consensus        84 ~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~l~~~m~~~  151 (176)
                        +...+..+-..|..    .+++++|+..|++..+.+   +...+..+-..|..    .+++++|.+.|++..+.
T Consensus        73 --~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~  143 (273)
T 1ouv_A           73 --YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL  143 (273)
T ss_dssp             --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred             --CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc
Confidence              45556666666666    666777776666666543   55566666666666    66666666666666554

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.83  E-value=2.5e-07  Score=61.20  Aligned_cols=118  Identities=10%  Similarity=-0.089  Sum_probs=95.9

Q ss_pred             CCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHH
Q 036589           48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT  127 (176)
Q Consensus        48 ~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  127 (176)
                      ..+...|..+...+.+.|++++|...|++..+..  .-+...|..+..+|.+.|++++|+..|++..+.. +-+...|..
T Consensus         8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~   84 (164)
T 3sz7_A            8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSR   84 (164)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence            4467789999999999999999999999999762  3367788899999999999999999999988654 336788999


Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHh
Q 036589          128 LLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMN  168 (176)
Q Consensus       128 ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~  168 (176)
                      +-.+|...|++++|.+.|++..+.....++......+..+.
T Consensus        85 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  125 (164)
T 3sz7_A           85 LGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK  125 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            99999999999999999999987655424443444444333

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.81  E-value=3e-07  Score=63.88  Aligned_cols=121  Identities=7%  Similarity=-0.142  Sum_probs=99.4

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL  129 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  129 (176)
                      |+..|......+...|++++|...|++..+. ...++...+..+..++.+.|++++|+..|++..+.. +-+...|..+-
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   83 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKL-TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS   83 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence            5688888999999999999999999999987 443677777779999999999999999999988654 33667888999


Q ss_pred             HHHHhcCcHHHHHHHHHHHHhccccccch-------HHHHHHHHHhhccccC
Q 036589          130 NALLTCGKLDRMKELFISFNLKAIAVLDG-------LCSNLKIIMNDSQVRV  174 (176)
Q Consensus       130 ~~~~~~g~~~~a~~l~~~m~~~~~~~p~~-------~t~~~li~~~~~~g~~  174 (176)
                      ..|...|++++|.+.|++..+....  +.       ..|..+-..+.+.|++
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~g~~~~~~~~~  133 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVPG--NATIEKLYAIYYLKEGQKFQQAGNI  133 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHHhHHHHHhccH
Confidence            9999999999999999999876554  34       4466666666666654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.80  E-value=8.8e-08  Score=78.01  Aligned_cols=121  Identities=8%  Similarity=-0.014  Sum_probs=106.3

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL  129 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  129 (176)
                      +...|+.+...+.+.|++++|.+.|++..+..  .-+...|+.+-.+|.+.|++++|++.|++..+.. +-+...|+.+-
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg   84 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMG   84 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            57789999999999999999999999998762  2346788999999999999999999999988654 23578899999


Q ss_pred             HHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589          130 NALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       130 ~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      ..|...|++++|++.|++..+....  +...|+.+-..|.+.|+++
T Consensus        85 ~~l~~~g~~~~A~~~~~kAl~l~P~--~~~a~~~Lg~~~~~~g~~~  128 (723)
T 4gyw_A           85 NTLKEMQDVQGALQCYTRAIQINPA--FADAHSNLASIHKDSGNIP  128 (723)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHH
Confidence            9999999999999999999887665  7889999999999999875

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.80  E-value=1.1e-07  Score=62.41  Aligned_cols=129  Identities=8%  Similarity=-0.100  Sum_probs=98.3

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      .+..+-..+...|++++|...|+.....           .+.+...|..+..++...|++++|...+++..+. . ..+.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~-----------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-~-~~~~   81 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIEL-----------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-D-KKYI   81 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh-----------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-cccH
Confidence            3566677888899999999999986221           1236788888999999999999999999998876 2 3456


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHH--HHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL--NTLLNALLTCGKLDRMKELFISFNL  150 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--~~ll~~~~~~g~~~~a~~l~~~m~~  150 (176)
                      ..+..+..++...|++++|...|++..+.. +.+...+  -.+...+.+.|++++|.+.+....+
T Consensus        82 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           82 KGYYRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            678888899999999999999999887543 2233444  3344447788999999999887653

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.79  E-value=9.6e-08  Score=75.47  Aligned_cols=135  Identities=10%  Similarity=-0.113  Sum_probs=113.5

Q ss_pred             CCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 036589            6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP   85 (176)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~   85 (176)
                      ...+..+-..+.+.|++++|.+.|++. .+.          .+.+...|..+..++...|++++|.+.+++..+. . .-
T Consensus        23 ~~~~~~lg~~~~~~g~~~~A~~~~~~a-l~~----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-p~   89 (568)
T 2vsy_A           23 FVAWLMLADAELGMGDTTAGEMAVQRG-LAL----------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA-A-PE   89 (568)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHH-HTT----------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH-HHh----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CC
Confidence            446778888999999999999999997 231          1236888999999999999999999999999876 2 33


Q ss_pred             chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhc---CcHHHHHHHHHHHHhcccc
Q 036589           86 EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTC---GKLDRMKELFISFNLKAIA  154 (176)
Q Consensus        86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---g~~~~a~~l~~~m~~~~~~  154 (176)
                      +...+..+..+|.+.|++++|++.|++..+.. +.+...+..+...+...   |++++|.+.+++..+.+..
T Consensus        90 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~  160 (568)
T 2vsy_A           90 HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG  160 (568)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence            56788899999999999999999999988654 33577888999999999   9999999999999876554

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.78  E-value=5.2e-07  Score=64.36  Aligned_cols=139  Identities=12%  Similarity=-0.014  Sum_probs=85.3

Q ss_pred             CHHHHHHHHHh----ccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHhh
Q 036589            8 SPFRLASLLHL----QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGR----AKMFDEMQQILHQLKH   79 (176)
Q Consensus         8 ~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~   79 (176)
                      .+..+-..|.+    .+++++|+..|++. .+.         +   +...+..+...|..    .+++++|...|++..+
T Consensus        40 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a-~~~---------~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~  106 (273)
T 1ouv_A           40 GCFNLGVLYYQGQGVEKNLKKAASFYAKA-CDL---------N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACD  106 (273)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHH-HHT---------T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcCCCHHHHHHHHHHH-HHC---------C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHH
Confidence            34555566666    77777777777776 221         1   56666667777777    7777777777777766


Q ss_pred             cCCCCCchHHHHHHHHHHHh----ccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHh----cCcHHHHHHHHHHHHhc
Q 036589           80 DTRVIPEEIIFCNVISFYGR----ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLT----CGKLDRMKELFISFNLK  151 (176)
Q Consensus        80 ~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~l~~~m~~~  151 (176)
                      . +   +...+..+-..|..    .+++++|+..|++..+.+   +...+..+-..|..    .+++++|.+.|++..+.
T Consensus       107 ~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~  179 (273)
T 1ouv_A          107 L-K---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL  179 (273)
T ss_dssp             T-T---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             c-C---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            5 3   45566666666666    677777777777666544   44455555566655    66666666666666554


Q ss_pred             cccccchHHHHHHHHHhhc
Q 036589          152 AIAVLDGLCSNLKIIMNDS  170 (176)
Q Consensus       152 ~~~~p~~~t~~~li~~~~~  170 (176)
                      +    +...+..+-..|..
T Consensus       180 ~----~~~a~~~lg~~~~~  194 (273)
T 1ouv_A          180 K----DSPGCFNAGNMYHH  194 (273)
T ss_dssp             T----CHHHHHHHHHHHHH
T ss_pred             C----CHHHHHHHHHHHHc
Confidence            2    22344444444444

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.78  E-value=7.6e-07  Score=54.62  Aligned_cols=111  Identities=9%  Similarity=-0.048  Sum_probs=91.2

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL  129 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  129 (176)
                      ....|..+...+...|++++|...|++.... . +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a   79 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL-D-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKA   79 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-C-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence            5677888999999999999999999999876 2 3356778889999999999999999999988653 33677888999


Q ss_pred             HHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589          130 NALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI  165 (176)
Q Consensus       130 ~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li  165 (176)
                      ..+...|++++|.+.|++..+....  +...+..+-
T Consensus        80 ~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~  113 (118)
T 1elw_A           80 AALEFLNRFEEAKRTYEEGLKHEAN--NPQLKEGLQ  113 (118)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTT--CHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHcCCC--CHHHHHHHH
Confidence            9999999999999999998876554  444444443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=98.77  E-value=3.6e-08  Score=74.59  Aligned_cols=152  Identities=9%  Similarity=-0.042  Sum_probs=125.7

Q ss_pred             CCCCHHHHHHHHHhccC-hhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036589            5 KPTSPFRLASLLHLQKH-PKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV   83 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~   83 (176)
                      +...|+.+-..+.+.|+ +++|+..|++.. ..          .+-+...|+.+..++.+.|++++|...|++..+..  
T Consensus       130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al-~l----------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ld--  196 (382)
T 2h6f_A          130 NYTVWHFRRVLLKSLQKDLHEEMNYITAII-EE----------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD--  196 (382)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-HH----------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--
T ss_pred             CHHHHHHHHHHHHHcccCHHHHHHHHHHHH-HH----------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--
Confidence            34567888889999997 999999999972 21          12378899999999999999999999999999762  


Q ss_pred             CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHh-cCcHHHH-----HHHHHHHHhccccccc
Q 036589           84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLT-CGKLDRM-----KELFISFNLKAIAVLD  157 (176)
Q Consensus        84 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~g~~~~a-----~~l~~~m~~~~~~~p~  157 (176)
                      .-+...|..+-.++.+.|++++|+..|+++.+.. +-+...|+.+-..+.+ .|..++|     ++.|++..+....  +
T Consensus       197 P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~--~  273 (382)
T 2h6f_A          197 AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH--N  273 (382)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT--C
T ss_pred             ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC--C
Confidence            3467889999999999999999999999998765 3477889999999999 6666777     5888888876665  6


Q ss_pred             hHHHHHHHHHhhccc
Q 036589          158 GLCSNLKIIMNDSQV  172 (176)
Q Consensus       158 ~~t~~~li~~~~~~g  172 (176)
                      ...|..+...+...|
T Consensus       274 ~~a~~~l~~ll~~~g  288 (382)
T 2h6f_A          274 ESAWNYLKGILQDRG  288 (382)
T ss_dssp             HHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHccC
Confidence            778888888888766

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.76  E-value=1.6e-06  Score=55.62  Aligned_cols=115  Identities=10%  Similarity=-0.064  Sum_probs=94.3

Q ss_pred             CCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc----hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHh
Q 036589           48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE----EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK  123 (176)
Q Consensus        48 ~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  123 (176)
                      +.+...+..+...+...|++++|...|++..+.   .|+    ...+..+..+|...|++++|+..|++..+.. +.+..
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~  100 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVK  100 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHH
Confidence            457888999999999999999999999999865   344    6788889999999999999999999887643 33677


Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHh
Q 036589          124 SLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMN  168 (176)
Q Consensus       124 ~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~  168 (176)
                      .+..+..++...|++++|.+.|++..+....  +...+..+....
T Consensus       101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~  143 (148)
T 2dba_A          101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPK--NKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS--CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHH
Confidence            8888999999999999999999999876543  455555554443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.76  E-value=2.9e-07  Score=66.71  Aligned_cols=153  Identities=11%  Similarity=0.003  Sum_probs=112.5

Q ss_pred             HHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcH----HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc-
Q 036589           12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNL----LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE-   86 (176)
Q Consensus        12 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~----~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~-   86 (176)
                      .+..+.+.|++++|..+++.. ...        ....|+.    ..|..+...+...+++++|...|++......-..+ 
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~-l~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~  151 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNE-LKK--------EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV  151 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH-HTT--------CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT
T ss_pred             HHHHHHHHhhHHHHHHHHHHH-hcc--------ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH
Confidence            467788899999999999997 332        2333442    23445677777888999999999999874112223 


Q ss_pred             ---hHHHHHHHHHHHhccCHHHHHHHHHhccc----C-CCCc-cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc----cc
Q 036589           87 ---EIIFCNVISFYGRARLLEHALQVFDEMPS----F-NVQR-TVKSLNTLLNALLTCGKLDRMKELFISFNLK----AI  153 (176)
Q Consensus        87 ---~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~-~~~p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~----~~  153 (176)
                         ..+++.+..+|...|++++|+..|++..+    . +..+ ...+++.+...|.+.|++++|.+.+++..+.    +.
T Consensus       152 ~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~  231 (293)
T 3u3w_A          152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINS  231 (293)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTB
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCc
Confidence               33689999999999999999999998873    1 2222 2347889999999999999999999987643    22


Q ss_pred             cccchHHHHHHHHHhhcccc
Q 036589          154 AVLDGLCSNLKIIMNDSQVR  173 (176)
Q Consensus       154 ~~p~~~t~~~li~~~~~~g~  173 (176)
                      ...-..+|..+-.+|.+.|+
T Consensus       232 ~~~~~~~~~~lg~~~~~~g~  251 (293)
T 3u3w_A          232 MALIGQLYYQRGECLRKLEY  251 (293)
T ss_dssp             CTTHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHhCC
Confidence            20126788888888888774

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.75  E-value=6.9e-07  Score=69.95  Aligned_cols=152  Identities=11%  Similarity=-0.002  Sum_probs=106.6

Q ss_pred             CCHHHHHHHHHh-------ccChh-------HHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHH
Q 036589            7 TSPFRLASLLHL-------QKHPK-------LALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQ   72 (176)
Q Consensus         7 ~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~   72 (176)
                      ..|......+.+       .|+++       +|..+|++.....          .+-+...|..++..+.+.|++++|..
T Consensus       273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~----------~p~~~~l~~~~~~~~~~~g~~~~A~~  342 (530)
T 2ooe_A          273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL----------LKKNMLLYFAYADYEESRMKYEKVHS  342 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT----------CSSCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh----------CcccHHHHHHHHHHHHhcCCHHHHHH
Confidence            345566666665       68987       8999999983211          12368889999999999999999999


Q ss_pred             HHHHHhhcCCCCCc--hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHH-HHHhcCcHHHHHHHHHHHH
Q 036589           73 ILHQLKHDTRVIPE--EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLN-ALLTCGKLDRMKELFISFN  149 (176)
Q Consensus        73 ~~~~m~~~~g~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~~~~~g~~~~a~~l~~~m~  149 (176)
                      +|++..+.   .|+  ...|...+..+.+.|++++|.++|++..+.. +.+...|..... .+...|+.++|..+|+...
T Consensus       343 ~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al  418 (530)
T 2ooe_A          343 IYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGL  418 (530)
T ss_dssp             HHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence            99999976   343  3578888888888999999999998887542 112222222111 1235788888888888776


Q ss_pred             hccccccchHHHHHHHHHhhccccC
Q 036589          150 LKAIAVLDGLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       150 ~~~~~~p~~~t~~~li~~~~~~g~~  174 (176)
                      +....  +...|..++..+.+.|+.
T Consensus       419 ~~~p~--~~~~~~~~~~~~~~~g~~  441 (530)
T 2ooe_A          419 KKYGD--IPEYVLAYIDYLSHLNED  441 (530)
T ss_dssp             HHHTT--CHHHHHHHHHHHTTTTCH
T ss_pred             HHCCC--CHHHHHHHHHHHHhCCCH
Confidence            65432  567777777777776654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.74  E-value=7.7e-07  Score=56.02  Aligned_cols=100  Identities=7%  Similarity=-0.033  Sum_probs=86.5

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL  129 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  129 (176)
                      +...|......+.+.|++++|...|++..+..  ..+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+-
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg   79 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKA   79 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence            45678888899999999999999999998762  3457888999999999999999999999988654 34577889999


Q ss_pred             HHHHhcCcHHHHHHHHHHHHhcc
Q 036589          130 NALLTCGKLDRMKELFISFNLKA  152 (176)
Q Consensus       130 ~~~~~~g~~~~a~~l~~~m~~~~  152 (176)
                      .++...|++++|.+.|++..+..
T Consensus        80 ~~~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           80 TAQIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCHHHHHHHHHHHHHhC
Confidence            99999999999999999988765

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.73  E-value=2.9e-07  Score=60.58  Aligned_cols=102  Identities=8%  Similarity=-0.034  Sum_probs=88.3

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL  129 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  129 (176)
                      +...+..+...+.+.|++++|...|++.....  +-+...|..+-.+|.+.|++++|+..|++..+.. +-+...|..+-
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg  111 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTG  111 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence            56678889999999999999999999999772  3456788889999999999999999999998654 33678889999


Q ss_pred             HHHHhcCcHHHHHHHHHHHHhcccc
Q 036589          130 NALLTCGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus       130 ~~~~~~g~~~~a~~l~~~m~~~~~~  154 (176)
                      .+|.+.|++++|.+.|++..+....
T Consensus       112 ~~~~~lg~~~eA~~~~~~al~l~~~  136 (151)
T 3gyz_A          112 QCQLRLKAPLKAKECFELVIQHSND  136 (151)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999876443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.72  E-value=8e-07  Score=58.07  Aligned_cols=109  Identities=7%  Similarity=-0.017  Sum_probs=89.3

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL  129 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  129 (176)
                      +...+..+...+.+.|++++|...|+......  ..+...|..+-.+|...|++++|+..|++..+.. +.+...+..+-
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg   96 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAA   96 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHH
Confidence            56678888899999999999999999998762  3467778889999999999999999999988654 34677888899


Q ss_pred             HHHHhcCcHHHHHHHHHHHHhccccccchHHH
Q 036589          130 NALLTCGKLDRMKELFISFNLKAIAVLDGLCS  161 (176)
Q Consensus       130 ~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~  161 (176)
                      .+|...|++++|.+.|+...+.....|+...+
T Consensus        97 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  128 (148)
T 2vgx_A           97 ECLLQXGELAEAESGLFLAQELIANXPEFXEL  128 (148)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence            99999999999999999987654332444333

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.72  E-value=4.7e-07  Score=59.27  Aligned_cols=119  Identities=12%  Similarity=-0.015  Sum_probs=93.8

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL  129 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  129 (176)
                      ....|..+...+...|++++|...|++..+.  ...+...+..+..++...|++++|+..|++..+.. +.+...|..+.
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a   88 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRA   88 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence            4556888888999999999999999999876  23357788889999999999999999999988653 34677888999


Q ss_pred             HHHHhcCcHHHHHHHHHHHHhccccccchHHH--HHHHHHhhcccc
Q 036589          130 NALLTCGKLDRMKELFISFNLKAIAVLDGLCS--NLKIIMNDSQVR  173 (176)
Q Consensus       130 ~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~--~~li~~~~~~g~  173 (176)
                      ..+...|++++|.+.|++..+....  +...+  -.+...+.+.|+
T Consensus        89 ~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~~~~~~~~~~~~~~~  132 (166)
T 1a17_A           89 ASNMALGKFRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKA  132 (166)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999876554  33344  333333544444

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.72  E-value=2e-07  Score=64.96  Aligned_cols=158  Identities=6%  Similarity=-0.128  Sum_probs=111.2

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      .+..+...+.+.|++++|+..|+++....        +.-+.....+..+..++.+.|++++|...|+++.+...-.+..
T Consensus         6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--------p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~   77 (225)
T 2yhc_A            6 EIYATAQQKLQDGNWRQAITQLEALDNRY--------PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI   77 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--------TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH
Confidence            34556678889999999999999983221        1212235678889999999999999999999998763222221


Q ss_pred             -HHHHHHHHHHHh------------------ccCHHHHHHHHHhcccCCCCccHh-HH-----------------HHHHH
Q 036589           88 -IIFCNVISFYGR------------------ARLLEHALQVFDEMPSFNVQRTVK-SL-----------------NTLLN  130 (176)
Q Consensus        88 -~~~~~li~~~~~------------------~g~~~~a~~~~~~m~~~~~~p~~~-~~-----------------~~ll~  130 (176)
                       ..+..+..++.+                  .|++++|+..|+++.+.-  |+.. .+                 -.+..
T Consensus        78 ~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~  155 (225)
T 2yhc_A           78 DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAE  155 (225)
T ss_dssp             HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             233334444443                  578999999999998643  4332 22                 23456


Q ss_pred             HHHhcCcHHHHHHHHHHHHhcccccc-chHHHHHHHHHhhccccCC
Q 036589          131 ALLTCGKLDRMKELFISFNLKAIAVL-DGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       131 ~~~~~g~~~~a~~l~~~m~~~~~~~p-~~~t~~~li~~~~~~g~~~  175 (176)
                      .|.+.|++++|...|+++.+.....| ....+..+..+|.+.|+.+
T Consensus       156 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~  201 (225)
T 2yhc_A          156 YYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNA  201 (225)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcH
Confidence            78899999999999999987644311 2367888888998888764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.72  E-value=5.9e-08  Score=63.64  Aligned_cols=115  Identities=9%  Similarity=-0.118  Sum_probs=91.8

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcC
Q 036589           57 IITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCG  136 (176)
Q Consensus        57 li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g  136 (176)
                      |...+...|++++|...++.....  .+-+...+-.+-..|.+.|++++|++.|++..+.. +-+...|..+-..|.+.|
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~   79 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEE   79 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence            334455678899999999887755  12234455678999999999999999999988654 347788999999999999


Q ss_pred             cHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCCC
Q 036589          137 KLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVTG  176 (176)
Q Consensus       137 ~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~~  176 (176)
                      ++++|...|++..+....  +...|..+-..|.+.|++++
T Consensus        80 ~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~~~~~~  117 (150)
T 4ga2_A           80 NTDKAVECYRRSVELNPT--QKDLVLKIAELLCKNDVTDG  117 (150)
T ss_dssp             CHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHCSSSS
T ss_pred             chHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHH
Confidence            999999999999887665  67889999999999988753

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.71  E-value=9.1e-08  Score=63.97  Aligned_cols=125  Identities=11%  Similarity=0.083  Sum_probs=96.9

Q ss_pred             HHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHH
Q 036589           16 LHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVIS   95 (176)
Q Consensus        16 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~   95 (176)
                      +...|++++|+..|+.....           .+.+...|..+..+|...|++++|...|++..+..  ..+...+..+..
T Consensus        20 ~~~~~~~~~A~~~~~~al~~-----------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~   86 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRA-----------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALAT   86 (177)
T ss_dssp             CC-----CCCCHHHHHHHHH-----------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHh-----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHH
Confidence            45578888898888876221           12367889999999999999999999999998762  235667777888


Q ss_pred             H-HHhccCH--HHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589           96 F-YGRARLL--EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus        96 ~-~~~~g~~--~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~  154 (176)
                      + |...|++  ++|+..|++..+.. +.+...+..+...|...|++++|...|++..+....
T Consensus        87 ~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  147 (177)
T 2e2e_A           87 VLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP  147 (177)
T ss_dssp             HHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence            8 7789998  99999999988654 335678888899999999999999999998876554

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.71  E-value=2.2e-07  Score=57.63  Aligned_cols=113  Identities=11%  Similarity=0.062  Sum_probs=88.9

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~   86 (176)
                      ..+..+...+.+.|++++|.+.|+++ ...          .+.+...+..+...+.+.|++++|...++++.+. . ..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~-~~~----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~-~~~   76 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKA-LEL----------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PNN   76 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH-HHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH-HHH----------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-C-Ccc
Confidence            46777888999999999999999997 221          1236788999999999999999999999999876 2 345


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHH
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALL  133 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~  133 (176)
                      ..++..+...|...|++++|...|+++.+.. +.+...+..+-..+.
T Consensus        77 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           77 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence            6788889999999999999999999987543 224444444444443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.70  E-value=4.5e-07  Score=56.77  Aligned_cols=116  Identities=9%  Similarity=-0.028  Sum_probs=92.2

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCC--Ccc----Hh
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNV--QRT----VK  123 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~  123 (176)
                      ....|..+...+...|++++|...|++.... . ..+...+..+...|...|++++|+..|++..+..-  .++    ..
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~   80 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL-D-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK   80 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence            3567888999999999999999999999876 2 34567788899999999999999999998875431  122    67


Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhc
Q 036589          124 SLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDS  170 (176)
Q Consensus       124 ~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~  170 (176)
                      .+..+...+.+.|++++|.+.|++..+..   |+...+..+-.....
T Consensus        81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~  124 (131)
T 1elr_A           81 AYARIGNSYFKEEKYKDAIHFYNKSLAEH---RTPDVLKKCQQAEKI  124 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHH
Confidence            88889999999999999999999988753   555555555544443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.70  E-value=7.2e-08  Score=78.06  Aligned_cols=150  Identities=8%  Similarity=-0.092  Sum_probs=115.0

Q ss_pred             HhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHH
Q 036589           17 HLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISF   96 (176)
Q Consensus        17 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~   96 (176)
                      ...|++++|++.|++. .....  .......+.+...|..+..++.+.|++++|.+.|++..+..  .-+...|..+-.+
T Consensus       402 ~~~~~~~~A~~~~~~a-l~~~~--~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~  476 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAA-RHGAL--DADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVA  476 (681)
T ss_dssp             TTTCCHHHHHHHHHHH-HTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHh-hhhcc--cccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHH
Confidence            7789999999999987 20000  00001123366788889999999999999999999999762  3356788889999


Q ss_pred             HHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589           97 YGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus        97 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      |...|++++|++.|++..+.. +-+...|..+-..|.+.|++++ .+.|++..+....  +...|..+-.+|.+.|+++
T Consensus       477 ~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~--~~~a~~~lg~~~~~~g~~~  551 (681)
T 2pzi_A          477 ELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG--VISAAFGLARARSAEGDRV  551 (681)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc--hHHHHHHHHHHHHHcCCHH
Confidence            999999999999999988654 2356778888888888999988 8888888876654  6678888888888888764

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.69  E-value=3.3e-08  Score=80.00  Aligned_cols=151  Identities=8%  Similarity=-0.129  Sum_probs=121.2

Q ss_pred             CCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 036589            6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP   85 (176)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~   85 (176)
                      ...+..+-..+.+.|++++|++.|++....           .+-+...|..+..++...|++++|.+.|++..+..  .-
T Consensus       433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-----------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~  499 (681)
T 2pzi_A          433 VELPLMEVRALLDLGDVAKATRKLDDLAER-----------VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF--PG  499 (681)
T ss_dssp             SHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TT
T ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc-----------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC
Confidence            446777788999999999999999997221           12367899999999999999999999999998762  23


Q ss_pred             chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589           86 EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI  165 (176)
Q Consensus        86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li  165 (176)
                      +...|..+-.+|.+.|++++ ++.|++..+.. +-+...|..+-.++.+.|++++|.+.|++..+....  +...|..+.
T Consensus       500 ~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~~~a~~~~~  575 (681)
T 2pzi_A          500 ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRH--FTTARLTSA  575 (681)
T ss_dssp             CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT--HHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcc--cHHHHHHHH
Confidence            56778889999999999999 99999988654 346778999999999999999999999998776544  567777777


Q ss_pred             HHhhcccc
Q 036589          166 IMNDSQVR  173 (176)
Q Consensus       166 ~~~~~~g~  173 (176)
                      .++...++
T Consensus       576 ~~~~~~~~  583 (681)
T 2pzi_A          576 VTLLSGRS  583 (681)
T ss_dssp             HHTC----
T ss_pred             HHHHccCC
Confidence            77765443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.69  E-value=3.8e-07  Score=71.44  Aligned_cols=154  Identities=10%  Similarity=0.036  Sum_probs=115.9

Q ss_pred             CCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCC-c-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036589            6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRY-N-LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV   83 (176)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~   83 (176)
                      ...|..+...+.+.|++++|..+|+.. ...           .| + ...|...+..+.+.|++++|.++|++..+....
T Consensus       321 ~~l~~~~~~~~~~~g~~~~A~~~~~~a-l~~-----------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~  388 (530)
T 2ooe_A          321 MLLYFAYADYEESRMKYEKVHSIYNRL-LAI-----------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART  388 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHS-----------SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHH-hCc-----------cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence            446788889999999999999999998 221           22 3 358999999999999999999999999976222


Q ss_pred             CCchHHHHHHH-HHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccc--hHH
Q 036589           84 IPEEIIFCNVI-SFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLD--GLC  160 (176)
Q Consensus        84 ~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~--~~t  160 (176)
                        +...|.... ..+...|++++|..+|+...+.. +-+...|..++..+.+.|+.++|..+|++..+.+...|+  ...
T Consensus       389 --~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~l  465 (530)
T 2ooe_A          389 --RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI  465 (530)
T ss_dssp             --CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHH
T ss_pred             --chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHH
Confidence              222222222 12346899999999999887543 336788999999999999999999999999886432143  457


Q ss_pred             HHHHHHHhhccccC
Q 036589          161 SNLKIIMNDSQVRV  174 (176)
Q Consensus       161 ~~~li~~~~~~g~~  174 (176)
                      |...+....+.|+.
T Consensus       466 w~~~~~~e~~~G~~  479 (530)
T 2ooe_A          466 WARFLAFESNIGDL  479 (530)
T ss_dssp             HHHHHHHHHHSSCH
T ss_pred             HHHHHHHHHHcCCH
Confidence            87777777777764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.68  E-value=1.7e-07  Score=59.09  Aligned_cols=116  Identities=4%  Similarity=-0.077  Sum_probs=91.2

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~   86 (176)
                      ..+..+...+.+.|++++|...|++. ...          .+.+...|..+..++...|++++|...+++..+. . ..+
T Consensus        17 ~~~~~~~~~~~~~~~~~~A~~~~~~a-l~~----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~-~~~   83 (133)
T 2lni_A           17 LMVKNKGNECFQKGDYPQAMKHYTEA-IKR----------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL-E-PTF   83 (133)
T ss_dssp             HHHHHHHHHHHHTTCSHHHHHHHHHH-HTT----------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-C-TTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH-HHc----------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-C-CCc
Confidence            35677888899999999999999997 221          1236788999999999999999999999999876 2 335


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcC
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCG  136 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g  136 (176)
                      ...+..+..+|.+.|++++|++.|++..+.. +.+...+..+...+.+.|
T Consensus        84 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           84 IKGYTRKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence            6788889999999999999999999887543 223455666666665544

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.68  E-value=1.3e-06  Score=56.33  Aligned_cols=101  Identities=19%  Similarity=0.088  Sum_probs=85.5

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL  129 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  129 (176)
                      +...+..+...+.+.|++++|...|++.....  +.+...|..+-.+|.+.|++++|+..|+...+.. +.+...+..+-
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg   93 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAA   93 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence            55667778888999999999999999998762  3466778889999999999999999999988654 34667788899


Q ss_pred             HHHHhcCcHHHHHHHHHHHHhccc
Q 036589          130 NALLTCGKLDRMKELFISFNLKAI  153 (176)
Q Consensus       130 ~~~~~~g~~~~a~~l~~~m~~~~~  153 (176)
                      .+|...|++++|.+.|+...+...
T Consensus        94 ~~~~~~g~~~~A~~~~~~al~~~p  117 (142)
T 2xcb_A           94 ECHLQLGDLDGAESGFYSARALAA  117 (142)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC
Confidence            999999999999999999876544

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.68  E-value=1.7e-07  Score=68.03  Aligned_cols=161  Identities=7%  Similarity=-0.085  Sum_probs=115.0

Q ss_pred             HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC---CC-
Q 036589            9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRY-NLLHYDLIITKLGRAKMFDEMQQILHQLKHDT---RV-   83 (176)
Q Consensus         9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~---g~-   83 (176)
                      |+.....|...|++++|+..|++...-..      ..+.++ ...+|+.+..+|.+.|++++|...|++..+..   |- 
T Consensus        40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~  113 (292)
T 1qqe_A           40 CVQAATIYRLRKELNLAGDSFLKAADYQK------KAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF  113 (292)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHH------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHH------HhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            55566778889999999988887521100      001111 25689999999999999999999999877541   11 


Q ss_pred             CCchHHHHHHHHHHHhc-cCHHHHHHHHHhcccCC----CCcc-HhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccc
Q 036589           84 IPEEIIFCNVISFYGRA-RLLEHALQVFDEMPSFN----VQRT-VKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLD  157 (176)
Q Consensus        84 ~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~----~~p~-~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~  157 (176)
                      ..-..+++.+-..|... |++++|+..|++..+..    ..+. ..+++.+...+.+.|++++|.+.|++..+.....+.
T Consensus       114 ~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  193 (292)
T 1qqe_A          114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (292)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence            11145788899999996 99999999999876421    1111 356888999999999999999999999876544122


Q ss_pred             h-----HHHHHHHHHhhccccCC
Q 036589          158 G-----LCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       158 ~-----~t~~~li~~~~~~g~~~  175 (176)
                      .     ..|..+..++...|+++
T Consensus       194 ~~~~~~~~~~~lg~~~~~~g~~~  216 (292)
T 1qqe_A          194 SQWSLKDYFLKKGLCQLAATDAV  216 (292)
T ss_dssp             TGGGHHHHHHHHHHHHHHTTCHH
T ss_pred             ccHHHHHHHHHHHHHHHHcCCHH
Confidence            2     15667777777777653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.65  E-value=3.1e-07  Score=55.93  Aligned_cols=102  Identities=13%  Similarity=-0.038  Sum_probs=86.0

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCc--cHhHHHH
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR--TVKSLNT  127 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~  127 (176)
                      +...|..+...+...|++++|...+++..+. . ..+...+..+..++...|++++|++.|++..+.. +.  +...+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~   81 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL-D-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA   81 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH-C-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-C-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence            4556777888899999999999999999876 2 3356778889999999999999999999988653 23  5788899


Q ss_pred             HHHHHHhc-CcHHHHHHHHHHHHhcccc
Q 036589          128 LLNALLTC-GKLDRMKELFISFNLKAIA  154 (176)
Q Consensus       128 ll~~~~~~-g~~~~a~~l~~~m~~~~~~  154 (176)
                      +...+.+. |++++|.+.|++..+....
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~  109 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEHHH  109 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcccC
Confidence            99999999 9999999999999876554

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.65  E-value=3.2e-07  Score=57.35  Aligned_cols=118  Identities=6%  Similarity=-0.110  Sum_probs=94.4

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~   86 (176)
                      ..+..+...+...|++++|...|++....           .+.+...|..+..++...|++++|...+++..+. . ..+
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~   79 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL-----------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI-D-PAY   79 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTC
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHc-----------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc-C-ccC
Confidence            35667788889999999999999997222           1236788999999999999999999999999876 2 334


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcH
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKL  138 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~  138 (176)
                      ...+..+..+|.+.|++++|...|++..+.. +.+...+..+...+.+.|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           80 SKAYGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence            6778889999999999999999999987653 23566777777777776654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.65  E-value=6.1e-07  Score=66.55  Aligned_cols=121  Identities=7%  Similarity=-0.058  Sum_probs=101.2

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc--------------hHHHHHHHHHHHhccCHHHHHHHHHhccc
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE--------------EIIFCNVISFYGRARLLEHALQVFDEMPS  115 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~  115 (176)
                      +...|..+...+.+.|++++|...|++..+. .....              ...|..+..+|.+.|++++|+..|++..+
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~-~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  224 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW-LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE  224 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4567888999999999999999999999876 22211              47889999999999999999999999886


Q ss_pred             CCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccC
Q 036589          116 FNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       116 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~  174 (176)
                      .. +.+...|..+-.+|...|++++|.+.|++..+....  +...+..+...+.+.|+.
T Consensus       225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~~~a~~~l~~~~~~~~~~  280 (336)
T 1p5q_A          225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN--NKAAKTQLAVCQQRIRRQ  280 (336)
T ss_dssp             HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--CHHHHHHHHHHHHHHHHH
T ss_pred             hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHH
Confidence            54 347888999999999999999999999999887654  667788887777776654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.64  E-value=3.9e-07  Score=64.72  Aligned_cols=159  Identities=11%  Similarity=-0.064  Sum_probs=110.8

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHh--------cCChHHHHHHHHHHh
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGR--------AKMFDEMQQILHQLK   78 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~--------~g~~~~a~~~~~~m~   78 (176)
                      ..+..+-..|.+.|++++|+..|+......        +..+.....+..+..++.+        .|++++|...|++..
T Consensus        53 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--------p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l  124 (261)
T 3qky_A           53 DAQFYLARAYYQNKEYLLAASEYERFIQIY--------QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFI  124 (261)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHC--------CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHH
Confidence            356677788999999999999999983221        2222345678888888888        999999999999999


Q ss_pred             hcCCCCCchH-HH--------------HHHHHHHHhccCHHHHHHHHHhcccCCC--CccHhHHHHHHHHHHhc------
Q 036589           79 HDTRVIPEEI-IF--------------CNVISFYGRARLLEHALQVFDEMPSFNV--QRTVKSLNTLLNALLTC------  135 (176)
Q Consensus        79 ~~~g~~~~~~-~~--------------~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~------  135 (176)
                      +...-.+... ..              ..+...|.+.|++++|+..|++..+..-  ......+..+..+|...      
T Consensus       125 ~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~  204 (261)
T 3qky_A          125 DRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVR  204 (261)
T ss_dssp             HHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCG
T ss_pred             HHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchh
Confidence            7632112111 11              4567889999999999999999885431  11345677777888766      


Q ss_pred             ----CcHHHHHHHHHHHHhccccccc-hHHHHHHHHHhhcccc
Q 036589          136 ----GKLDRMKELFISFNLKAIAVLD-GLCSNLKIIMNDSQVR  173 (176)
Q Consensus       136 ----g~~~~a~~l~~~m~~~~~~~p~-~~t~~~li~~~~~~g~  173 (176)
                          |++++|...|++..+..+..|. ......+-..+.+.++
T Consensus       205 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~  247 (261)
T 3qky_A          205 ARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTE  247 (261)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHH
T ss_pred             hcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHH
Confidence                8999999999999876443122 2344444444444443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.63  E-value=1.8e-07  Score=63.82  Aligned_cols=149  Identities=11%  Similarity=-0.042  Sum_probs=101.6

Q ss_pred             HHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc---
Q 036589           10 FRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE---   86 (176)
Q Consensus        10 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~---   86 (176)
                      +.......-.|++++|.+.|+.- ..          ........+..+...+.+.|++++|...|++..+...-.++   
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~-~~----------~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~   76 (198)
T 2fbn_A            8 HHHSSGRENLYFQGAKKSIYDYT-DE----------EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDD   76 (198)
T ss_dssp             --------------CCCSGGGCC-HH----------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCC
T ss_pred             cchhhhhhhhhhccccCchhhCC-HH----------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccch
Confidence            34445556667777787777654 11          11124556777888889999999999999998875222221   


Q ss_pred             -----------hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc
Q 036589           87 -----------EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAV  155 (176)
Q Consensus        87 -----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~  155 (176)
                                 ...+..+..+|.+.|++++|+..|+...+.. +.+...+..+-.+|...|++++|.+.|++..+.... 
T Consensus        77 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-  154 (198)
T 2fbn_A           77 QILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-  154 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-
Confidence                       2678889999999999999999999888653 346788888999999999999999999998876544 


Q ss_pred             cchHHHHHHHHHhhccc
Q 036589          156 LDGLCSNLKIIMNDSQV  172 (176)
Q Consensus       156 p~~~t~~~li~~~~~~g  172 (176)
                       +...+..+...+...+
T Consensus       155 -~~~~~~~l~~~~~~~~  170 (198)
T 2fbn_A          155 -NLDIRNSYELCVNKLK  170 (198)
T ss_dssp             -CHHHHHHHHHHHHHHH
T ss_pred             -cHHHHHHHHHHHHHHH
Confidence             5666666666665544

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.63  E-value=4.6e-07  Score=61.41  Aligned_cols=149  Identities=11%  Similarity=-0.053  Sum_probs=100.4

Q ss_pred             HHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc---CCC-CCchHHHH
Q 036589           16 LHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD---TRV-IPEEIIFC   91 (176)
Q Consensus        16 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~---~g~-~~~~~~~~   91 (176)
                      ....|++++|.+.++.+ ...        +  ......+..+...+...|++++|...+++....   .+. ......+.
T Consensus         2 ~~~~g~~~~A~~~~~~~-~~~--------~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   70 (203)
T 3gw4_A            2 AFEAHDYALAERQAQAL-LAH--------P--ATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALH   70 (203)
T ss_dssp             -----CHHHHHHHHHHH-HTS--------T--TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHh-cCC--------h--HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            34678999999933333 110        1  126778888999999999999999999887762   112 23446777


Q ss_pred             HHHHHHHhccCHHHHHHHHHhcccC----CCC--ccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc----cccccchHHH
Q 036589           92 NVISFYGRARLLEHALQVFDEMPSF----NVQ--RTVKSLNTLLNALLTCGKLDRMKELFISFNLK----AIAVLDGLCS  161 (176)
Q Consensus        92 ~li~~~~~~g~~~~a~~~~~~m~~~----~~~--p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~----~~~~p~~~t~  161 (176)
                      .+...|...|++++|...|++..+.    +-.  .....++.+-..+...|++++|.+.+++..+.    +....-..++
T Consensus        71 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  150 (203)
T 3gw4_A           71 QVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAF  150 (203)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            8888999999999999998876542    211  12455778888889999999999999887642    2110223456


Q ss_pred             HHHHHHhhccccCC
Q 036589          162 NLKIIMNDSQVRVT  175 (176)
Q Consensus       162 ~~li~~~~~~g~~~  175 (176)
                      ..+-..|...|+++
T Consensus       151 ~~la~~~~~~g~~~  164 (203)
T 3gw4_A          151 RGLGDLAQQEKNLL  164 (203)
T ss_dssp             HHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHCcCHH
Confidence            77777787777754

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.63  E-value=1.2e-06  Score=60.01  Aligned_cols=119  Identities=8%  Similarity=-0.074  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHH
Q 036589           51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLN  130 (176)
Q Consensus        51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~  130 (176)
                      ...+..+...+...|++++|...|++..     .|+...+..+..+|.+.|++++|+..|++..+.. +.+...|..+..
T Consensus         6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~   79 (213)
T 1hh8_A            6 AISLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGM   79 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence            4456667888889999999999998774     4577899999999999999999999999988654 346788999999


Q ss_pred             HHHhcCcHHHHHHHHHHHHhcccccc--------------chHHHHHHHHHhhccccCC
Q 036589          131 ALLTCGKLDRMKELFISFNLKAIAVL--------------DGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       131 ~~~~~g~~~~a~~l~~~m~~~~~~~p--------------~~~t~~~li~~~~~~g~~~  175 (176)
                      .|...|++++|.+.|++..+.....+              ....+..+-.+|...|+++
T Consensus        80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  138 (213)
T 1hh8_A           80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWK  138 (213)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHH
Confidence            99999999999999999987543201              3377888888888888764

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.62  E-value=1.8e-06  Score=54.80  Aligned_cols=101  Identities=12%  Similarity=-0.011  Sum_probs=87.7

Q ss_pred             CCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHH
Q 036589           48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNT  127 (176)
Q Consensus        48 ~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  127 (176)
                      +.+...|..+...+.+.|++++|...|+..... . ..+...|..+..+|...|++++|+..|++..+.. +.+...+..
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~   82 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR-N-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFF   82 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh-C-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHH
Confidence            347888999999999999999999999998876 2 3356788899999999999999999999988654 346788999


Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHhc
Q 036589          128 LLNALLTCGKLDRMKELFISFNLK  151 (176)
Q Consensus       128 ll~~~~~~g~~~~a~~l~~~m~~~  151 (176)
                      +..++...|++++|.+.|++..+.
T Consensus        83 l~~~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           83 LGQCQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHH
Confidence            999999999999999999998754

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.62  E-value=3.2e-07  Score=68.09  Aligned_cols=131  Identities=10%  Similarity=-0.089  Sum_probs=104.5

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCC---CC---------cHHHHHHHHHHHHhcCChHHHHHHHH
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPF---RY---------NLLHYDLIITKLGRAKMFDEMQQILH   75 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~---~~---------~~~~y~~li~~~~~~g~~~~a~~~~~   75 (176)
                      .+..+-..|.+.|++++|+..|++.....        +..   ..         ....|..+..++.+.|++++|...++
T Consensus       149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--------p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~  220 (336)
T 1p5q_A          149 IVKERGTVYFKEGKYKQALLQYKKIVSWL--------EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCN  220 (336)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--------TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHh--------hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            46667788899999999999999872211        110   00         05789999999999999999999999


Q ss_pred             HHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHH-HHHHHHHH
Q 036589           76 QLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRM-KELFISFN  149 (176)
Q Consensus        76 ~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a-~~l~~~m~  149 (176)
                      +..+. . ..+...|..+..+|...|++++|+..|++..+.. +-+...+..+...+.+.|+.++| ..+|+.|.
T Consensus       221 ~al~~-~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          221 KALEL-D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHh-C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99987 2 3467788899999999999999999999988654 33677888899999999999988 45666664

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.60  E-value=7.8e-07  Score=66.63  Aligned_cols=157  Identities=10%  Similarity=-0.072  Sum_probs=115.0

Q ss_pred             HHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCC-cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-----CC
Q 036589           12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRY-NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV-----IP   85 (176)
Q Consensus        12 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~-----~~   85 (176)
                      .-..+...|++++|+..|++...-..      ..+..+ ....|..+...|...|++++|...+++..+...-     ..
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  182 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLI------FVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR  182 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGG------GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHh------hCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence            33456778999999999998722110      001111 4567889999999999999999999987754111     11


Q ss_pred             chHHHHHHHHHHHhccCHHHHHHHHHhcccC----CCC-ccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh-----ccccc
Q 036589           86 EEIIFCNVISFYGRARLLEHALQVFDEMPSF----NVQ-RTVKSLNTLLNALLTCGKLDRMKELFISFNL-----KAIAV  155 (176)
Q Consensus        86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~-----~~~~~  155 (176)
                      ...+++.+-..|...|++++|+..|++..+.    +-. ....+++.+-..|...|++++|.+.|++..+     ...+ 
T Consensus       183 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~-  261 (383)
T 3ulq_A          183 LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP-  261 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG-
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch-
Confidence            2457888899999999999999999887632    111 1224788899999999999999999999876     3324 


Q ss_pred             cchHHHHHHHHHhhccccCC
Q 036589          156 LDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       156 p~~~t~~~li~~~~~~g~~~  175 (176)
                      ....++..+-..|.+.|+++
T Consensus       262 ~~~~~~~~l~~~~~~~g~~~  281 (383)
T 3ulq_A          262 SLPQAYFLITQIHYKLGKID  281 (383)
T ss_dssp             GHHHHHHHHHHHHHHTTCHH
T ss_pred             hHHHHHHHHHHHHHHCCCHH
Confidence            46778888889988888764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.58  E-value=3e-06  Score=61.30  Aligned_cols=158  Identities=11%  Similarity=-0.013  Sum_probs=112.5

Q ss_pred             HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCc----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC--
Q 036589            9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYN----LLHYDLIITKLGRAKMFDEMQQILHQLKHDTR--   82 (176)
Q Consensus         9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g--   82 (176)
                      +...+..+...|++++|.+.++......         ...++    ...+..+...+...|++++|...+++..+...  
T Consensus        78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~  148 (293)
T 2qfc_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKE---------EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTG  148 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTC---------CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCS
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhccc---------cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC
Confidence            3455777889999999999998652221         11111    23344566677788999999999999875411  


Q ss_pred             CCC--chHHHHHHHHHHHhccCHHHHHHHHHhccc----CCCCc--cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-
Q 036589           83 VIP--EEIIFCNVISFYGRARLLEHALQVFDEMPS----FNVQR--TVKSLNTLLNALLTCGKLDRMKELFISFNLKAI-  153 (176)
Q Consensus        83 ~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p--~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~-  153 (176)
                      ..+  ...+++.+...|...|++++|+..|++..+    .+-.+  ...+++.+...|.+.|++++|.+.+++..+... 
T Consensus       149 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~  228 (293)
T 2qfc_A          149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            111  145888999999999999999999998762    11111  226889999999999999999999998764321 


Q ss_pred             ---cccchHHHHHHHHHhhccccCC
Q 036589          154 ---AVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       154 ---~~p~~~t~~~li~~~~~~g~~~  175 (176)
                         ...-..+|..+-..|.+.|+.+
T Consensus       229 ~~~~~~~~~~~~~lg~~y~~~g~~~  253 (293)
T 2qfc_A          229 INSMALIGQLYYQRGECLRKLEYEE  253 (293)
T ss_dssp             TTBCSSHHHHHHHHHHHHHHTTCCH
T ss_pred             cCcHHHHHHHHHHHHHHHHHcCCcH
Confidence               1012678888888888888764

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.57  E-value=3.5e-07  Score=55.69  Aligned_cols=105  Identities=7%  Similarity=-0.110  Sum_probs=86.3

Q ss_pred             CCCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036589            2 NKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT   81 (176)
Q Consensus         2 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~   81 (176)
                      ...+...+..+...+.+.|++++|...|++.. ..          .+.+...|..+..++...|++++|...+++..+..
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~----------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~   70 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAI-QL----------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI   70 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHH-HH----------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHH-Hh----------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            44566788889999999999999999999872 21          12367788999999999999999999999999762


Q ss_pred             CCCCchHHHHHHHHHHHhc-cCHHHHHHHHHhcccCC
Q 036589           82 RVIPEEIIFCNVISFYGRA-RLLEHALQVFDEMPSFN  117 (176)
Q Consensus        82 g~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~  117 (176)
                      .-..+...+..+..+|.+. |++++|++.|+...+..
T Consensus        71 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           71 EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEH  107 (112)
T ss_dssp             CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred             cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence            1111577888899999999 99999999999988654

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.56  E-value=2.2e-07  Score=58.04  Aligned_cols=106  Identities=8%  Similarity=-0.085  Sum_probs=81.7

Q ss_pred             hcCChHHHHHHHHHHhhcCC--CCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHH
Q 036589           63 RAKMFDEMQQILHQLKHDTR--VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDR  140 (176)
Q Consensus        63 ~~g~~~~a~~~~~~m~~~~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~  140 (176)
                      ..|++++|...|++..+. +  -+-+...+..+..+|.+.|++++|+..|++..+.. +-+...+..+..++.+.|++++
T Consensus         2 ~~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~   79 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQ   79 (117)
T ss_dssp             -----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             CCCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHH
Confidence            468899999999999876 3  13345778889999999999999999999988654 3357788889999999999999


Q ss_pred             HHHHHHHHHhccccccchHHHHHHHHHhhc
Q 036589          141 MKELFISFNLKAIAVLDGLCSNLKIIMNDS  170 (176)
Q Consensus       141 a~~l~~~m~~~~~~~p~~~t~~~li~~~~~  170 (176)
                      |.+.|++..+.....|+...|...+..|..
T Consensus        80 A~~~~~~al~~~p~~~~~~~~~~ai~~~~~  109 (117)
T 3k9i_A           80 GVELLLKIIAETSDDETIQSYKQAILFYAD  109 (117)
T ss_dssp             HHHHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence            999999988765543667777777776654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.56  E-value=3.6e-06  Score=56.21  Aligned_cols=131  Identities=16%  Similarity=0.083  Sum_probs=95.9

Q ss_pred             CCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHH-HHhcCChHHHHHHHHHHhhcCCCC
Q 036589            6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK-LGRAKMFDEMQQILHQLKHDTRVI   84 (176)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~-~~~~g~~~~a~~~~~~m~~~~g~~   84 (176)
                      +..+..+-..+.+.|++++|+..|+.. ...           .|+...+...... +.+.+...+|...+++..+..  +
T Consensus        40 ~~a~~~la~~~~~~g~~~~A~~~~~~a-~~~-----------~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~--P  105 (176)
T 2r5s_A           40 GDVKLAKADCLLETKQFELAQELLATI-PLE-----------YQDNSYKSLIAKLELHQQAAESPELKRLEQELAAN--P  105 (176)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTTC-CGG-----------GCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS--T
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHh-hhc-----------cCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhC--C
Confidence            345777888999999999999999998 332           2233333322211 223233445788888888651  2


Q ss_pred             CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCc-cHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589           85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR-TVKSLNTLLNALLTCGKLDRMKELFISFNL  150 (176)
Q Consensus        85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~  150 (176)
                      -+...+..+..++...|++++|+..|++..+..-.+ +...+..+...+...|+.++|...|++...
T Consensus       106 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          106 DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            346788889999999999999999999998664222 356889999999999999999999988654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.55  E-value=1.4e-06  Score=55.39  Aligned_cols=109  Identities=10%  Similarity=0.018  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCC--CCcc----HhH
Q 036589           51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFN--VQRT----VKS  124 (176)
Q Consensus        51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~----~~~  124 (176)
                      ...+..+...+.+.|++++|...|++..+. . +-+...|+.+-.+|.+.|++++|++.|++..+..  ..++    ..+
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~   85 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-D-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA   85 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence            456888999999999999999999999876 2 3356788899999999999999999999887432  1111    246


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHH
Q 036589          125 LNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLK  164 (176)
Q Consensus       125 ~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~l  164 (176)
                      |..+-..+...|++++|++.|++..+..   ||..+...|
T Consensus        86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~---~~~~~~~~l  122 (127)
T 4gcn_A           86 MSRAGNAFQKQNDLSLAVQWFHRSLSEF---RDPELVKKV  122 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhC---cCHHHHHHH
Confidence            7778888999999999999999977643   555444433

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.54  E-value=7.6e-07  Score=64.55  Aligned_cols=139  Identities=6%  Similarity=-0.073  Sum_probs=102.8

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCC-CCCcHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcC---
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKP-FRYNLLHYDLIITKLGRA-KMFDEMQQILHQLKHDT---   81 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~li~~~~~~-g~~~~a~~~~~~m~~~~---   81 (176)
                      .+|+.+-..|.+.|++++|+..|++...-..      ..+ ...-..+|+.+...|... |++++|...|++..+..   
T Consensus        78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~------~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~  151 (292)
T 1qqe_A           78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFT------HRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD  151 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH------HcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC
Confidence            3677888899999999999998887621100      001 011245788899999996 99999999999987641   


Q ss_pred             CCCCc-hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccH------hHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589           82 RVIPE-EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV------KSLNTLLNALLTCGKLDRMKELFISFNLK  151 (176)
Q Consensus        82 g~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~g~~~~a~~l~~~m~~~  151 (176)
                      +-... ..+++.+...|.+.|++++|+..|++..+.......      ..|..+..++...|++++|...|++..+.
T Consensus       152 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  228 (292)
T 1qqe_A          152 QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE  228 (292)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred             CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            11111 356888999999999999999999998864422221      15677888899999999999999997753

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.54  E-value=2e-06  Score=59.19  Aligned_cols=115  Identities=8%  Similarity=-0.036  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc-hHHHHH----------------HHHHHHhccCHHHHHHHHHhc
Q 036589           51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE-EIIFCN----------------VISFYGRARLLEHALQVFDEM  113 (176)
Q Consensus        51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~-~~~~~~----------------li~~~~~~g~~~~a~~~~~~m  113 (176)
                      ...+-.....+...|++++|...|++..+.   .|+ ...|..                +..+|.+.|++++|+..|++.
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   80 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL---NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL   80 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            334444556677899999999999998875   233 344555                888899999999999999988


Q ss_pred             ccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhcc
Q 036589          114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQ  171 (176)
Q Consensus       114 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~  171 (176)
                      .+.. +-+...+..+-..+...|++++|.+.|++..+..+.  +..+|..+-..|...
T Consensus        81 l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~--~~~a~~~lg~~~~~~  135 (208)
T 3urz_A           81 LQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD--NLAANIFLGNYYYLT  135 (208)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHH
T ss_pred             HHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHH
Confidence            8654 336788888999999999999999999999887664  566777766665443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.53  E-value=5.1e-06  Score=60.11  Aligned_cols=137  Identities=11%  Similarity=-0.078  Sum_probs=102.7

Q ss_pred             HHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc--hHH
Q 036589           12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE--EII   89 (176)
Q Consensus        12 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~--~~~   89 (176)
                      ....+...|++++|.++|+.+ ...           .|+......+...+.+.+++++|+..|+...+. . .|.  ...
T Consensus       108 yA~~L~~~g~y~eA~~~l~~~-~~~-----------~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a  173 (282)
T 4f3v_A          108 FAACEAAQGNYADAMEALEAA-PVA-----------GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAA  173 (282)
T ss_dssp             HHHHHHHHTCHHHHHHHHTSS-CCT-----------TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHH-Hhc-----------CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHH
Confidence            467788899999999999999 332           233335566667889999999999999865544 1 221  335


Q ss_pred             HHHHHHHHHhccCHHHHHHHHHhcccCCCCcc--HhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589           90 FCNVISFYGRARLLEHALQVFDEMPSFNVQRT--VKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI  165 (176)
Q Consensus        90 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li  165 (176)
                      +..+-.++...|++++|+..|++..+....|.  .......-.++.+.|+.++|..+|+++....   |+...+..|.
T Consensus       174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~---P~~~~~~aL~  248 (282)
T 4f3v_A          174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH---PEPKVAAALK  248 (282)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---CCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHh
Confidence            66788999999999999999999875433253  3466777788899999999999999998753   5545555443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.53  E-value=1.4e-06  Score=65.30  Aligned_cols=155  Identities=10%  Similarity=-0.127  Sum_probs=112.3

Q ss_pred             HHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC----CC-CchH
Q 036589           14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR----VI-PEEI   88 (176)
Q Consensus        14 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g----~~-~~~~   88 (176)
                      ..+...|++++|+..|++...-..     ...........|..+..+|...|+++.|...+++..+...    .. ....
T Consensus       109 ~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  183 (378)
T 3q15_A          109 MYEFDQKEYVEAIGYYREAEKELP-----FVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ  183 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTGG-----GCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHh-----hCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence            345678999999999988722110     0011112355788899999999999999999988765311    11 1356


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHhcccC----CCC-ccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh-----ccccccch
Q 036589           89 IFCNVISFYGRARLLEHALQVFDEMPSF----NVQ-RTVKSLNTLLNALLTCGKLDRMKELFISFNL-----KAIAVLDG  158 (176)
Q Consensus        89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~-----~~~~~p~~  158 (176)
                      +++.+-.+|...|++++|++.|++..+.    +-. ....+++.+-..|...|++++|.+.|.+..+     ...  ...
T Consensus       184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--~~~  261 (378)
T 3q15_A          184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD--LLP  261 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG--GHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh--hHH
Confidence            7788999999999999999999877642    211 1245688888999999999999999998876     333  347


Q ss_pred             HHHHHHHHHhhccccCC
Q 036589          159 LCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       159 ~t~~~li~~~~~~g~~~  175 (176)
                      .++..+-..|.+.|+++
T Consensus       262 ~~~~~la~~~~~~g~~~  278 (378)
T 3q15_A          262 KVLFGLSWTLCKAGQTQ  278 (378)
T ss_dssp             HHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHCCCHH
Confidence            78888888888888764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.52  E-value=3.8e-07  Score=62.86  Aligned_cols=109  Identities=9%  Similarity=0.005  Sum_probs=82.9

Q ss_pred             HHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHH----------------HHHHHHhcCChHHHHHHHH
Q 036589           12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDL----------------IITKLGRAKMFDEMQQILH   75 (176)
Q Consensus        12 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~----------------li~~~~~~g~~~~a~~~~~   75 (176)
                      .-..+.+.|++++|+..|++....           .+-+...|..                +..++.+.|++++|...|+
T Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~-----------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~   78 (208)
T 3urz_A           10 KVSAAIEAGQNGQAVSYFRQTIAL-----------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK   78 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-----------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh-----------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            345677899999999999997221           1124556666                8899999999999999999


Q ss_pred             HHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHh
Q 036589           76 QLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLT  134 (176)
Q Consensus        76 ~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  134 (176)
                      +..+..  +-+...+..+..+|...|++++|+..|++..+.. +-+...|..+-..|..
T Consensus        79 ~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~  134 (208)
T 3urz_A           79 ELLQKA--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYL  134 (208)
T ss_dssp             HHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            999762  3356788889999999999999999999988654 2345566655555533

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.50  E-value=3.1e-07  Score=71.57  Aligned_cols=135  Identities=6%  Similarity=-0.059  Sum_probs=97.9

Q ss_pred             HHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc----CC--CCCch
Q 036589           14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD----TR--VIPEE   87 (176)
Q Consensus        14 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----~g--~~~~~   87 (176)
                      ..+...|++++|..++++........   ..+..+....+++.|...|...|++++|+.++++..+.    .|  ..-..
T Consensus       317 ~~~~~qg~~~eA~~l~~~aL~~~~~~---lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a  393 (490)
T 3n71_A          317 DKARSEGLYHEVVKLCRECLEKQEPV---FADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG  393 (490)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHTTT---BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            34667899999988876642111000   01222335678999999999999999999998886643    12  33345


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhccc-----CC--CCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPS-----FN--VQRTVKSLNTLLNALLTCGKLDRMKELFISFNLK  151 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~--~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~  151 (176)
                      .+++.|...|...|++++|+.+|++..+     .|  .+.+..+.+.+-.++...+.+++|+.+|..+++.
T Consensus       394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7889999999999999999998887653     33  2223455666667888899999999999999763

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.48  E-value=3.5e-06  Score=60.96  Aligned_cols=132  Identities=8%  Similarity=-0.037  Sum_probs=97.2

Q ss_pred             HHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCC--cHHHHHHHHHHHHhcCChHHHHHHHHHHhh---cCCCCC
Q 036589           11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRY--NLLHYDLIITKLGRAKMFDEMQQILHQLKH---DTRVIP   85 (176)
Q Consensus        11 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--~~~~y~~li~~~~~~g~~~~a~~~~~~m~~---~~g~~~   85 (176)
                      .+...+...|++++|+..|++......       ....+  ...+|+.+...|...|++++|...|++..+   ..+-.+
T Consensus       120 ~~~~~~~~~~~~~~A~~~~~~al~~~~-------~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~  192 (293)
T 2qfc_A          120 YVAAYVLKKVDYEYCILELKKLLNQQL-------TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE  192 (293)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHTTCC-------CSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHh-------cCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc
Confidence            355667788999999999887522110       11111  255899999999999999999999999873   212122


Q ss_pred             --chHHHHHHHHHHHhccCHHHHHHHHHhcccC----CCCc-cHhHHHHHHHHHHhcCcHHHH-HHHHHHHH
Q 036589           86 --EEIIFCNVISFYGRARLLEHALQVFDEMPSF----NVQR-TVKSLNTLLNALLTCGKLDRM-KELFISFN  149 (176)
Q Consensus        86 --~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a-~~l~~~m~  149 (176)
                        ...+++.+..+|.+.|++++|+..|++..+.    +... -..+|..+-..|.+.|++++| ...|++..
T Consensus       193 ~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             cchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence              2258889999999999999999999987632    1111 267788899999999999999 77777654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.48  E-value=5.3e-07  Score=67.58  Aligned_cols=160  Identities=8%  Similarity=-0.087  Sum_probs=104.6

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc----CCC
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD----TRV   83 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----~g~   83 (176)
                      +++.+-..|...|++++|+..|++...-..     ..........+|..+..+|...|++++|.+.+++..+.    ...
T Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~  260 (383)
T 3ulq_A          186 CHSLFATNFLDLKQYEDAISHFQKAYSMAE-----AEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL  260 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-----HcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence            456677788888999998888877621100     00001112347788888888999999999888887762    021


Q ss_pred             CCchHHHHHHHHHHHhccCHHHHHHHHHhcccC----CCCccHhHHHHHHHHHHhcCc---HHHHHHHHHHHHhcccccc
Q 036589           84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSF----NVQRTVKSLNTLLNALLTCGK---LDRMKELFISFNLKAIAVL  156 (176)
Q Consensus        84 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~ll~~~~~~g~---~~~a~~l~~~m~~~~~~~p  156 (176)
                      .....++..+...|.+.|++++|...|++..+.    +-......++.+-..+...|+   +++|..++++..  ..+ .
T Consensus       261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~-~  337 (383)
T 3ulq_A          261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYA-D  337 (383)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHH-H
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHH-H
Confidence            334567788888889999999998888876532    111223335666677777787   777777776652  222 3


Q ss_pred             chHHHHHHHHHhhccccCC
Q 036589          157 DGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       157 ~~~t~~~li~~~~~~g~~~  175 (176)
                      ....+..+-..|...|+++
T Consensus       338 ~~~~~~~la~~y~~~g~~~  356 (383)
T 3ulq_A          338 LEDFAIDVAKYYHERKNFQ  356 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHCCCHH
Confidence            3456677777887777654

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.47  E-value=1.8e-06  Score=56.71  Aligned_cols=100  Identities=9%  Similarity=-0.099  Sum_probs=83.3

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      .+..+-..+.+.|++++|+..|+... ..          .+-+...|..+..+|.+.|++++|...|++..+..  +-+.
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al-~~----------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--P~~~  104 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLC-IY----------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--KNDY  104 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH-HH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--SSCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH-Hh----------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--CCCc
Confidence            46667788899999999999999982 21          13378899999999999999999999999999772  2356


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccH
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV  122 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  122 (176)
                      ..|..+-.+|.+.|++++|+..|++..+..  |+.
T Consensus       105 ~~~~~lg~~~~~lg~~~eA~~~~~~al~l~--~~~  137 (151)
T 3gyz_A          105 TPVFHTGQCQLRLKAPLKAKECFELVIQHS--NDE  137 (151)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCH
Confidence            678889999999999999999999988653  554

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.45  E-value=2.4e-06  Score=54.70  Aligned_cols=97  Identities=7%  Similarity=-0.090  Sum_probs=80.6

Q ss_pred             CCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCc----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcC
Q 036589            6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYN----LLHYDLIITKLGRAKMFDEMQQILHQLKHDT   81 (176)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~   81 (176)
                      ...+..+...+.+.|++++|++.|++. ...           .|+    ...|..+..++...|++++|...+++..+. 
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a-~~~-----------~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-   94 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQA-LGL-----------DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK-   94 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHH-HTS-----------CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHH-HHH-----------cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-
Confidence            345677788899999999999999997 221           234    678888999999999999999999998876 


Q ss_pred             CCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccC
Q 036589           82 RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF  116 (176)
Q Consensus        82 g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  116 (176)
                      . ..+...+..+..+|...|++++|...|++..+.
T Consensus        95 ~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A           95 D-GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             T-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             C-ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            2 235677888999999999999999999988754

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.44  E-value=2.2e-06  Score=54.41  Aligned_cols=96  Identities=7%  Similarity=-0.055  Sum_probs=80.3

Q ss_pred             HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchH
Q 036589            9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEI   88 (176)
Q Consensus         9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~   88 (176)
                      +...=..|.+.|++++|++.|++....           .+.+...|..+..++.+.|++++|...|++..+. . ..+..
T Consensus        16 ~~~~G~~~~~~g~~~~A~~~~~~al~~-----------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~-p~~~~   82 (126)
T 4gco_A           16 EKNKGNEYFKKGDYPTAMRHYNEAVKR-----------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL-D-SKFIK   82 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh-h-hhhhH
Confidence            455667889999999999999997222           1337889999999999999999999999999876 2 33567


Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHhcccCC
Q 036589           89 IFCNVISFYGRARLLEHALQVFDEMPSFN  117 (176)
Q Consensus        89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~  117 (176)
                      .|..+..+|...|++++|++.|++..+..
T Consensus        83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~  111 (126)
T 4gco_A           83 GYIRKAACLVAMREWSKAQRAYEDALQVD  111 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            88889999999999999999999988643

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.44  E-value=2.1e-05  Score=49.22  Aligned_cols=97  Identities=12%  Similarity=-0.027  Sum_probs=77.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhhcCCCCC-chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCcc----HhHHHHHH
Q 036589           55 DLIITKLGRAKMFDEMQQILHQLKHDTRVIP-EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRT----VKSLNTLL  129 (176)
Q Consensus        55 ~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~ll  129 (176)
                      ..+...+...|++++|...|+...+...-.+ ....+..+..+|.+.|++++|+..|+...+..  |+    ...+..+.
T Consensus         6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la   83 (129)
T 2xev_A            6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLG   83 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHH
Confidence            3466778899999999999999987621111 11467778899999999999999999988643  33    56678888


Q ss_pred             HHHHhcCcHHHHHHHHHHHHhccc
Q 036589          130 NALLTCGKLDRMKELFISFNLKAI  153 (176)
Q Consensus       130 ~~~~~~g~~~~a~~l~~~m~~~~~  153 (176)
                      .++.+.|++++|...|++..+...
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~~p  107 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQYP  107 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCC
Confidence            999999999999999999987644

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.44  E-value=3.8e-07  Score=68.59  Aligned_cols=163  Identities=12%  Similarity=-0.042  Sum_probs=110.7

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC---C-C
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT---R-V   83 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~---g-~   83 (176)
                      .+..+...|...|++++|...|++......     ...........|..+...|...|++++|...+++..+..   + .
T Consensus        88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  162 (411)
T 4a1s_A           88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAK-----SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDR  162 (411)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-----HccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhch
Confidence            466777888888999988888877521100     001112345678888888889999999998888866541   1 1


Q ss_pred             CCchHHHHHHHHHHHhccC-----------------HHHHHHHHHhcccC----CC-CccHhHHHHHHHHHHhcCcHHHH
Q 036589           84 IPEEIIFCNVISFYGRARL-----------------LEHALQVFDEMPSF----NV-QRTVKSLNTLLNALLTCGKLDRM  141 (176)
Q Consensus        84 ~~~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~m~~~----~~-~p~~~~~~~ll~~~~~~g~~~~a  141 (176)
                      .....++..+...|...|+                 +++|++.|++..+.    +. ......+..+...|...|++++|
T Consensus       163 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  242 (411)
T 4a1s_A          163 LSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAA  242 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHH
Confidence            2234577788888889999                 88888888776431    11 12335777888888999999999


Q ss_pred             HHHHHHHHhcccccc----chHHHHHHHHHhhccccCC
Q 036589          142 KELFISFNLKAIAVL----DGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       142 ~~l~~~m~~~~~~~p----~~~t~~~li~~~~~~g~~~  175 (176)
                      .+.|++..+.....+    ...++..+...|...|+++
T Consensus       243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  280 (411)
T 4a1s_A          243 IEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFE  280 (411)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHH
Confidence            999988765322101    2347778888888887754

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.43  E-value=8.4e-06  Score=56.30  Aligned_cols=145  Identities=10%  Similarity=-0.014  Sum_probs=112.2

Q ss_pred             CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcC----ChHHHHHHHHHHhhc
Q 036589            5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAK----MFDEMQQILHQLKHD   80 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g----~~~~a~~~~~~m~~~   80 (176)
                      ++..+..|-..|...+++++|++.|+.. .+.+            ++..+..+-..|.. +    ++++|.+.|++..+.
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a-~~~g------------~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~   82 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKA-AAQG------------DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA   82 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHH-HHTT------------CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHcC------------CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC
Confidence            3445667777888899999999999998 3422            67788888888888 6    899999999999876


Q ss_pred             CCCCCchHHHHHHHHHHHh----ccCHHHHHHHHHhcccCCCC-ccHhHHHHHHHHHHh----cCcHHHHHHHHHHHHhc
Q 036589           81 TRVIPEEIIFCNVISFYGR----ARLLEHALQVFDEMPSFNVQ-RTVKSLNTLLNALLT----CGKLDRMKELFISFNLK  151 (176)
Q Consensus        81 ~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~----~g~~~~a~~l~~~m~~~  151 (176)
                       |   +...+..|-..|..    .+++++|+..|++..+.|.. .+...+..|-..|..    .+++++|.+.|++..+.
T Consensus        83 -g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~  158 (212)
T 3rjv_A           83 -G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL  158 (212)
T ss_dssp             -T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred             -C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence             4   55677778888877    78999999999999987622 136788888888888    78999999999998876


Q ss_pred             cccccchHHHHHHHHHhhc
Q 036589          152 AIAVLDGLCSNLKIIMNDS  170 (176)
Q Consensus       152 ~~~~p~~~t~~~li~~~~~  170 (176)
                        + .+...+..|-..|..
T Consensus       159 --~-~~~~a~~~Lg~~y~~  174 (212)
T 3rjv_A          159 --S-RTGYAEYWAGMMFQQ  174 (212)
T ss_dssp             --S-CTTHHHHHHHHHHHH
T ss_pred             --C-CCHHHHHHHHHHHHc
Confidence              2 233355556555543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.42  E-value=5.8e-06  Score=50.50  Aligned_cols=98  Identities=8%  Similarity=-0.087  Sum_probs=81.7

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~   86 (176)
                      ..+..+...+...|++++|.+.|+... ..          .+.+...|..+..++...|++++|...+++..+. . ..+
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~----------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~   71 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAI-KL----------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-K-PDW   71 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTC
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHH-HH----------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh-C-ccc
Confidence            456777888999999999999999972 21          1236788899999999999999999999999876 2 235


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhcccCC
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPSFN  117 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  117 (176)
                      ...+..+..++...|++++|.+.|++..+..
T Consensus        72 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  102 (118)
T 1elw_A           72 GKGYSRKAAALEFLNRFEEAKRTYEEGLKHE  102 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence            6778889999999999999999999988654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.41  E-value=1.3e-06  Score=56.53  Aligned_cols=138  Identities=11%  Similarity=-0.056  Sum_probs=97.8

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC---C-C
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT---R-V   83 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~---g-~   83 (176)
                      ++..+-..+...|++++|+..|++......     ...........+..+...+...|++++|.+.+++..+..   + .
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~   85 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAK-----EFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR   85 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-----HhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence            456777788889999999999988621100     000001112478888899999999999999999876541   1 1


Q ss_pred             CCchHHHHHHHHHHHhccCHHHHHHHHHhcccC----CCC-ccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589           84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSF----NVQ-RTVKSLNTLLNALLTCGKLDRMKELFISFNL  150 (176)
Q Consensus        84 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~  150 (176)
                      ......+..+...+...|++++|.+.+++..+.    +.. .....+..+...+...|++++|.+.+++..+
T Consensus        86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            112456777888999999999999999876632    211 1245677888889999999999999988765

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.40  E-value=4.9e-06  Score=62.23  Aligned_cols=159  Identities=12%  Similarity=-0.005  Sum_probs=112.6

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC---CC
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFR-YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT---RV   83 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~---g~   83 (176)
                      ++..+-..|...|++++|+..+++...-..     ...... ....+++.+..+|...|++++|...|++..+..   +-
T Consensus       143 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~  217 (378)
T 3q15_A          143 FHFKVAEAYYHMKQTHVSMYHILQALDIYQ-----NHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN  217 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----TSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-----hCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Confidence            566778889999999999888877521100     001111 235678899999999999999999998877531   11


Q ss_pred             -CCchHHHHHHHHHHHhccCHHHHHHHHHhccc----CCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcc----cc
Q 036589           84 -IPEEIIFCNVISFYGRARLLEHALQVFDEMPS----FNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA----IA  154 (176)
Q Consensus        84 -~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~----~~  154 (176)
                       .....+++.+-.+|...|++++|+..|++..+    .+.+....++..+...+.+.|++++|.+.+++..+..    -+
T Consensus       218 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  297 (378)
T 3q15_A          218 DRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHK  297 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCS
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH
Confidence             12345778899999999999999999998875    1223347778889999999999999999999987532    22


Q ss_pred             ccchHHHHHHHHHhhccc
Q 036589          155 VLDGLCSNLKIIMNDSQV  172 (176)
Q Consensus       155 ~p~~~t~~~li~~~~~~g  172 (176)
                       .....+..+-..|...+
T Consensus       298 -~~~~~~~~l~~ly~~~~  314 (378)
T 3q15_A          298 -FYKELFLFLQAVYKETV  314 (378)
T ss_dssp             -CHHHHHHHHHHHHSSSC
T ss_pred             -HHHHHHHHHHHHHhCCC
Confidence             22334555544554444

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.40  E-value=6.5e-06  Score=70.79  Aligned_cols=116  Identities=12%  Similarity=0.122  Sum_probs=77.4

Q ss_pred             CCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 036589            6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP   85 (176)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~   85 (176)
                      +.+|..+-.++...|++++|++.|....                |...|..++.+|.+.|++++|.+.|...++. .  +
T Consensus      1105 p~vWsqLAKAql~~G~~kEAIdsYiKAd----------------D~say~eVa~~~~~lGkyEEAIeyL~mArk~-~--~ 1165 (1630)
T 1xi4_A         1105 PAVWSQLAKAQLQKGMVKEAIDSYIKAD----------------DPSSYMEVVQAANTSGNWEELVKYLQMARKK-A--R 1165 (1630)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHhcC----------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-c--c
Confidence            5578889999999999999999997651                6788888999999999999999999877655 2  3


Q ss_pred             chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHH
Q 036589           86 EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFIS  147 (176)
Q Consensus        86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~  147 (176)
                      +....+.+..+|++.+++++.....+       .++...|..+-..|...|++++|..+|..
T Consensus      1166 e~~Idt~LafaYAKl~rleele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~~Y~k 1220 (1630)
T 1xi4_A         1166 ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN 1220 (1630)
T ss_pred             cccccHHHHHHHHhhcCHHHHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence            33333346666666666664333321       23334444444444555555555554444

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.39  E-value=6.3e-07  Score=67.35  Aligned_cols=157  Identities=10%  Similarity=-0.070  Sum_probs=115.2

Q ss_pred             HHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCc--HHHHHHHHHHHHhcCChHHHHHHHHHHhhcC---C-C
Q 036589           10 FRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYN--LLHYDLIITKLGRAKMFDEMQQILHQLKHDT---R-V   83 (176)
Q Consensus        10 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~---g-~   83 (176)
                      ..+-..+...|++++|+..|++.....        +. .+.  ...|..+...+...|++++|...+++..+..   + .
T Consensus        52 ~~~g~~~~~~g~~~~A~~~~~~al~~~--------~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  122 (411)
T 4a1s_A           52 ALEGERLCNAGDCRAGVAFFQAAIQAG--------TE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDR  122 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--------CS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHhc--------cc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCc
Confidence            345667788999999999999973221        11 111  2578889999999999999999999876531   1 2


Q ss_pred             CCchHHHHHHHHHHHhccCHHHHHHHHHhcccC----C-CCccHhHHHHHHHHHHhcCc-----------------HHHH
Q 036589           84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSF----N-VQRTVKSLNTLLNALLTCGK-----------------LDRM  141 (176)
Q Consensus        84 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~p~~~~~~~ll~~~~~~g~-----------------~~~a  141 (176)
                      ......+..+...|...|++++|+..|++..+.    + ......++..+...|...|+                 +++|
T Consensus       123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A  202 (411)
T 4a1s_A          123 LGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRA  202 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHH
Confidence            334567888999999999999999999887642    1 12235578888899999999                 9999


Q ss_pred             HHHHHHHHhc----cccccchHHHHHHHHHhhccccCC
Q 036589          142 KELFISFNLK----AIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       142 ~~l~~~m~~~----~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      .+.+.+..+.    +.......++..+...|...|+++
T Consensus       203 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  240 (411)
T 4a1s_A          203 VEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQ  240 (411)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChH
Confidence            9999886542    111023567888888888888764

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.39  E-value=1.1e-06  Score=54.83  Aligned_cols=111  Identities=11%  Similarity=0.055  Sum_probs=86.5

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC-CCCc
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR-VIPE   86 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g-~~~~   86 (176)
                      .+..+...+...|++++|...|++. ...          .+.+...|..+...+...|++++|...+++...... ..++
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a-~~~----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~   74 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKA-KEL----------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED   74 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH-HHH----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHH-Hhc----------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh
Confidence            4667788899999999999999997 221          133678889999999999999999999999887621 1122


Q ss_pred             ----hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHH
Q 036589           87 ----EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA  131 (176)
Q Consensus        87 ----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~  131 (176)
                          ..++..+..+|.+.|++++|.+.|++..+..  |+......+-..
T Consensus        75 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~  121 (131)
T 1elr_A           75 YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA  121 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence                6778889999999999999999999988653  565555544443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.39  E-value=5.5e-06  Score=52.11  Aligned_cols=97  Identities=5%  Similarity=-0.076  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHH
Q 036589           53 HYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL  132 (176)
Q Consensus        53 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~  132 (176)
                      .+..+...+.+.|++++|...|++..+..  .-+...|..+-.++.+.|++++|+..|++..+.. +-+...+..+...+
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~   95 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH   95 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            35557778889999999999999999762  3367778889999999999999999999988654 23667888899999


Q ss_pred             HhcCcHHHHHHHHHHHHhcc
Q 036589          133 LTCGKLDRMKELFISFNLKA  152 (176)
Q Consensus       133 ~~~g~~~~a~~l~~~m~~~~  152 (176)
                      ...|++++|.+.|++..+..
T Consensus        96 ~~~g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           96 TNEHNANAALASLRAWLLSQ  115 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHC--
T ss_pred             HHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999987643

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.38  E-value=3.4e-06  Score=62.91  Aligned_cols=162  Identities=10%  Similarity=-0.131  Sum_probs=115.1

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC---CC-
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT---RV-   83 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~---g~-   83 (176)
                      .+..+-..+...|++++|.+.|++......     ...........|..+...+...|++++|...+++.....   +. 
T Consensus       189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  263 (406)
T 3sf4_A          189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAK-----EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR  263 (406)
T ss_dssp             HHHHHHHHHHHHTBHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHH-----hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCc
Confidence            466778888999999999999988621100     000111123478889999999999999999999877541   11 


Q ss_pred             CCchHHHHHHHHHHHhccCHHHHHHHHHhcccC----CCCc-cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc----ccc
Q 036589           84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSF----NVQR-TVKSLNTLLNALLTCGKLDRMKELFISFNLK----AIA  154 (176)
Q Consensus        84 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~----~~~  154 (176)
                      .....++..+...|.+.|++++|...|++..+.    +..+ ...++..+...|...|++++|.+.|++..+.    +..
T Consensus       264 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  343 (406)
T 3sf4_A          264 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDK  343 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence            112567788999999999999999999887642    1111 2567888889999999999999999987643    211


Q ss_pred             ccchHHHHHHHHHhhccccC
Q 036589          155 VLDGLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       155 ~p~~~t~~~li~~~~~~g~~  174 (176)
                      .....++..+...|...|+.
T Consensus       344 ~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          344 SGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT
T ss_pred             cchhHHHHHHHHHHHHhhHh
Confidence            03466777777788777764

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.38  E-value=9.1e-06  Score=59.55  Aligned_cols=121  Identities=7%  Similarity=-0.077  Sum_probs=91.6

Q ss_pred             CcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCc-----cH
Q 036589           49 YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV-IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR-----TV  122 (176)
Q Consensus        49 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-----~~  122 (176)
                      ++...+..+..++...|++++|.+++++.... +. .-+...+..++..+.+.|+.+.|.+.+++|.+.  .|     +-
T Consensus        98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~-~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d  174 (310)
T 3mv2_B           98 NSPYELYLLATAQAILGDLDKSLETCVEGIDN-DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDN  174 (310)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cccccccch
Confidence            45566668889999999999999999998765 32 347788888999999999999999999999864  35     24


Q ss_pred             hHHHHHHHH--HH--hcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589          123 KSLNTLLNA--LL--TCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       123 ~~~~~ll~~--~~--~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      .+...|..+  ..  ..+++.+|..+|+++.+.  . |+..+-..++.++...|+++
T Consensus       175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~-p~~~~~~lLln~~~~~g~~~  228 (310)
T 3mv2_B          175 EMILNLAESYIKFATNKETATSNFYYYEELSQT--F-PTWKTQLGLLNLHLQQRNIA  228 (310)
T ss_dssp             HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--S-CSHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--C-CCcccHHHHHHHHHHcCCHH
Confidence            555555555  22  344899999999998664  2 44445556666788888765

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.38  E-value=2.4e-06  Score=58.13  Aligned_cols=133  Identities=8%  Similarity=-0.104  Sum_probs=94.0

Q ss_pred             HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCc-----------HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 036589            9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYN-----------LLHYDLIITKLGRAKMFDEMQQILHQL   77 (176)
Q Consensus         9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~y~~li~~~~~~g~~~~a~~~~~~m   77 (176)
                      +..+-..+.+.|++++|+..|++......      .......           ...|..+..+|.+.|++++|...+++.
T Consensus        41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  114 (198)
T 2fbn_A           41 IKEEGNEFFKKNEINEAIVKYKEALDFFI------HTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV  114 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTT------TCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHh------cccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            45566788899999999999998722110      0010011           378888999999999999999999999


Q ss_pred             hhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHH-HHHHHHHh
Q 036589           78 KHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMK-ELFISFNL  150 (176)
Q Consensus        78 ~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~-~l~~~m~~  150 (176)
                      .+.  ...+...+..+..+|...|++++|+..|++..+.. +-+...+..+...+...++.+++. ..|..|..
T Consensus       115 l~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          115 LKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             HHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             HHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            876  23456788889999999999999999999987543 235667777778888877777776 55555544

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.38  E-value=3e-06  Score=57.28  Aligned_cols=139  Identities=10%  Similarity=-0.056  Sum_probs=101.3

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc---CCC
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD---TRV   83 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~---~g~   83 (176)
                      ..+..+-..+...|++++|...|++......     ...........+..+...+...|++++|.+.+++..+.   .+-
T Consensus        27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  101 (203)
T 3gw4_A           27 GARFMLGYVYAFMDRFDEARASFQALQQQAQ-----KSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE  101 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH-----HcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCc
Confidence            3567778888999999999999888622000     00111234567888999999999999999999887654   221


Q ss_pred             C--CchHHHHHHHHHHHhccCHHHHHHHHHhccc----CCCCc-cHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589           84 I--PEEIIFCNVISFYGRARLLEHALQVFDEMPS----FNVQR-TVKSLNTLLNALLTCGKLDRMKELFISFNL  150 (176)
Q Consensus        84 ~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~  150 (176)
                      .  .....+..+...+...|++++|...|++..+    .+... -..++..+-..+...|++++|.+.+++..+
T Consensus       102 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          102 DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD  175 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            2  2345678889999999999999999988763    22111 134467888899999999999999988764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.37  E-value=9e-07  Score=64.64  Aligned_cols=161  Identities=7%  Similarity=-0.020  Sum_probs=108.5

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC---CC-
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT---RV-   83 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~---g~-   83 (176)
                      .|+.....|...|++++|...|.+...-..     .......-...|+.+...|.+.|++++|...|++..+..   |- 
T Consensus        38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~  112 (307)
T 2ifu_A           38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHA-----NNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP  112 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-----HcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            355666778888999999888887511100     000101124578889999999999999999998866431   11 


Q ss_pred             CCchHHHHHHHHHHHhccCHHHHHHHHHhcccC----CCCc-cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc---
Q 036589           84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSF----NVQR-TVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAV---  155 (176)
Q Consensus        84 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~---  155 (176)
                      ..-..+++.+-..|.. |++++|+..|++..+.    +-.+ ...+++.+-..|.+.|++++|++.|++..+.....   
T Consensus       113 ~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~  191 (307)
T 2ifu_A          113 DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENY  191 (307)
T ss_dssp             HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCh
Confidence            1124677788888888 9999999999877632    1111 14678888999999999999999999887532210   


Q ss_pred             cc-hHHHHHHHHHhhccccC
Q 036589          156 LD-GLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       156 p~-~~t~~~li~~~~~~g~~  174 (176)
                      +. ...+..+...+...|++
T Consensus       192 ~~~~~~~~~~g~~~~~~g~~  211 (307)
T 2ifu_A          192 PTCYKKCIAQVLVQLHRADY  211 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHHHcCCH
Confidence            22 23566666666666664

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.35  E-value=7.6e-06  Score=59.21  Aligned_cols=131  Identities=12%  Similarity=-0.026  Sum_probs=101.6

Q ss_pred             CCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHH-HHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589            6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLH-YDLIITKLGRAKMFDEMQQILHQLKHDTRVI   84 (176)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~   84 (176)
                      +..+..+...+.+.|++++|...|+.. ..           ..|+... .......+.+.++.++|.+.+++..+.  -+
T Consensus       151 ~~a~~~la~~~~~~g~~~~A~~~l~~~-~~-----------~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~--~P  216 (287)
T 3qou_A          151 GEIGLLLAETLIALNRSEDAEAVLXTI-PL-----------QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE--NP  216 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTTS-CG-----------GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--CT
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHhC-ch-----------hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc--CC
Confidence            345677889999999999999999998 33           2334433 333334466788888899999998876  23


Q ss_pred             CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCC-ccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589           85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQ-RTVKSLNTLLNALLTCGKLDRMKELFISFNL  150 (176)
Q Consensus        85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~  150 (176)
                      .+...+..+...|...|++++|+..|++..+..-. .+...+..+...|...|+.++|...|++-..
T Consensus       217 ~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          217 EDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            45677888999999999999999999999865411 2367899999999999999999998887543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.35  E-value=5.6e-06  Score=63.94  Aligned_cols=121  Identities=11%  Similarity=-0.037  Sum_probs=96.1

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc-------------hHHHHHHHHHHHhccCHHHHHHHHHhcccC
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE-------------EIIFCNVISFYGRARLLEHALQVFDEMPSF  116 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~-------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  116 (176)
                      ....|..+...+.+.|++++|...|++..+...-.++             ...|..+..+|.+.|++++|+..|++..+.
T Consensus       267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  346 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL  346 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            3457888889999999999999999999875221111             578889999999999999999999998865


Q ss_pred             CCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhcccc
Q 036589          117 NVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVR  173 (176)
Q Consensus       117 ~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~  173 (176)
                      . +.+...|..+-.+|...|++++|...|++..+....  +...+..+-.++.+.++
T Consensus       347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~--~~~a~~~l~~~~~~~~~  400 (457)
T 1kt0_A          347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ--NKAARLQISMCQKKAKE  400 (457)
T ss_dssp             S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHH
T ss_pred             C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHH
Confidence            4 346788999999999999999999999999887554  55677777776665554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.34  E-value=2.3e-05  Score=56.53  Aligned_cols=99  Identities=12%  Similarity=0.001  Sum_probs=86.0

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL  129 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  129 (176)
                      +...+..+...+.+.|++++|...|++..+..  .-+...|..+..+|.+.|++++|+..|++..+.. +-+...+..+.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg   79 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   79 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            56778889999999999999999999998762  2367788899999999999999999999988654 34678888999


Q ss_pred             HHHHhcCcHHHHHHHHHHHHhc
Q 036589          130 NALLTCGKLDRMKELFISFNLK  151 (176)
Q Consensus       130 ~~~~~~g~~~~a~~l~~~m~~~  151 (176)
                      .+|...|++++|.+.|.+..+.
T Consensus        80 ~~~~~~g~~~~A~~~~~~al~l  101 (281)
T 2c2l_A           80 QCQLEMESYDEAIANLQRAYSL  101 (281)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999999999999988764

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.34  E-value=1.8e-06  Score=54.79  Aligned_cols=100  Identities=5%  Similarity=-0.147  Sum_probs=83.5

Q ss_pred             CCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 036589            3 KAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR   82 (176)
Q Consensus         3 ~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g   82 (176)
                      ..++..+..+-..+...|++++|+..|+.....           .+.+...|..+..++...|++++|...+++..+. .
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~   73 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITR-----------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL-D   73 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh-----------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C
Confidence            344557788888999999999999999987222           1236788999999999999999999999999976 2


Q ss_pred             CCCchHHHHHHHHHHHhccCHHHHHHHHHhccc
Q 036589           83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPS  115 (176)
Q Consensus        83 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  115 (176)
                       .-+...+..+..+|...|++++|+..|++..+
T Consensus        74 -p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           74 -GQSVKAHFFLGQCQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence             33567888899999999999999999998874

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.33  E-value=1e-05  Score=56.19  Aligned_cols=137  Identities=7%  Similarity=-0.132  Sum_probs=97.8

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHh------------------cCChHH
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGR------------------AKMFDE   69 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~------------------~g~~~~   69 (176)
                      .+..+..+|.+.|++++|+..|+++....        +....-...+..+..++.+                  .|++++
T Consensus        43 a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--------P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  114 (225)
T 2yhc_A           43 VQLDLIYAYYKNADLPLAQAAIDRFIRLN--------PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARA  114 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--------cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHH
Confidence            46677889999999999999999973221        1211112345445555544                  578999


Q ss_pred             HHHHHHHHhhcCCCCCchHH---------------HHHHHHHHHhccCHHHHHHHHHhcccCCCCcc----HhHHHHHHH
Q 036589           70 MQQILHQLKHDTRVIPEEII---------------FCNVISFYGRARLLEHALQVFDEMPSFNVQRT----VKSLNTLLN  130 (176)
Q Consensus        70 a~~~~~~m~~~~g~~~~~~~---------------~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~ll~  130 (176)
                      |...|+++.+...-.+....               ...+...|.+.|++++|+..|+++.+.-  |+    ...+..+..
T Consensus       115 A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~  192 (225)
T 2yhc_A          115 AFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMEN  192 (225)
T ss_dssp             HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHH
Confidence            99999999976321121110               0235667889999999999999988542  33    256888999


Q ss_pred             HHHhcCcHHHHHHHHHHHHhcccc
Q 036589          131 ALLTCGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus       131 ~~~~~g~~~~a~~l~~~m~~~~~~  154 (176)
                      ++.+.|+.++|.+.++.+...+..
T Consensus       193 ~~~~~g~~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          193 AYRQMQMNAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred             HHHHcCCcHHHHHHHHHHHhhCCC
Confidence            999999999999999998876543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.33  E-value=2.5e-06  Score=63.58  Aligned_cols=163  Identities=10%  Similarity=-0.009  Sum_probs=116.1

Q ss_pred             CHHHHHHHHHhccC--------------------hhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCCh
Q 036589            8 SPFRLASLLHLQKH--------------------PKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMF   67 (176)
Q Consensus         8 ~~~~l~~~~~~~~~--------------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~   67 (176)
                      .+..+-..|...|+                    +++|.+.|++...-..     ...........|..+...+...|++
T Consensus       129 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~la~~~~~~g~~  203 (406)
T 3sf4_A          129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVT-----ALGDRAAQGRAFGNLGNTHYLLGNF  203 (406)
T ss_dssp             HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHTBH
T ss_pred             HHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHH-----hccCcHHHHHHHHHHHHHHHHccCH
Confidence            56677788888899                    8888888876411100     0011122345788899999999999


Q ss_pred             HHHHHHHHHHhhcCC----CCCchHHHHHHHHHHHhccCHHHHHHHHHhcccC----CCCc-cHhHHHHHHHHHHhcCcH
Q 036589           68 DEMQQILHQLKHDTR----VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF----NVQR-TVKSLNTLLNALLTCGKL  138 (176)
Q Consensus        68 ~~a~~~~~~m~~~~g----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~g~~  138 (176)
                      ++|...+++..+...    ......++..+...|...|++++|...|++..+.    +..+ ...++..+...|...|++
T Consensus       204 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  283 (406)
T 3sf4_A          204 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY  283 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcH
Confidence            999999998875411    1112347888999999999999999999987632    1111 156788899999999999


Q ss_pred             HHHHHHHHHHHhccccc----cchHHHHHHHHHhhccccCC
Q 036589          139 DRMKELFISFNLKAIAV----LDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       139 ~~a~~l~~~m~~~~~~~----p~~~t~~~li~~~~~~g~~~  175 (176)
                      ++|.+.|++..+.....    ....++..+...|...|+++
T Consensus       284 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  324 (406)
T 3sf4_A          284 EKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD  324 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            99999999886532210    22667888888888888754

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.31  E-value=3e-06  Score=61.17  Aligned_cols=158  Identities=10%  Similarity=-0.052  Sum_probs=109.3

Q ss_pred             HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCc--HHHHHHHHHHHHhcCChHHHHHHHHHHhhcC---C-
Q 036589            9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYN--LLHYDLIITKLGRAKMFDEMQQILHQLKHDT---R-   82 (176)
Q Consensus         9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~---g-   82 (176)
                      +...-..+.+.|++++|...|++.....        +. .+.  ...|..+...+...|++++|...+++.....   + 
T Consensus         8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--------~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~   78 (338)
T 3ro2_A            8 LALEGERLCKSGDCRAGVSFFEAAVQVG--------TE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD   78 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--------CS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhC--------cc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc
Confidence            4455677888999999999999972221        11 111  4678888999999999999999988865431   1 


Q ss_pred             CCCchHHHHHHHHHHHhccCHHHHHHHHHhcccC----CCC-ccHhHHHHHHHHHHhcCc--------------------
Q 036589           83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF----NVQ-RTVKSLNTLLNALLTCGK--------------------  137 (176)
Q Consensus        83 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~ll~~~~~~g~--------------------  137 (176)
                      .......+..+...|...|++++|...|++..+.    +-. ....++..+...+...|+                    
T Consensus        79 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  158 (338)
T 3ro2_A           79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNA  158 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHH
Confidence            1223567778888999999999999988876532    111 113477788888888888                    


Q ss_pred             HHHHHHHHHHHHhc----cccccchHHHHHHHHHhhccccCC
Q 036589          138 LDRMKELFISFNLK----AIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       138 ~~~a~~l~~~m~~~----~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      +++|.+.+++..+.    +.......++..+...|...|+++
T Consensus       159 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  200 (338)
T 3ro2_A          159 LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFR  200 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHH
Confidence            88888888776532    111023456777777777777653

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.29  E-value=1.3e-05  Score=60.18  Aligned_cols=120  Identities=8%  Similarity=-0.099  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcC--------------CCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccC
Q 036589           51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDT--------------RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF  116 (176)
Q Consensus        51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~--------------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  116 (176)
                      ...|..+...+.+.|++++|.+.|++..+..              --..+...|..+..+|.+.|++++|+..+++..+.
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            3457778889999999999999999988610              01224578888999999999999999999999865


Q ss_pred             CCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhcccc
Q 036589          117 NVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVR  173 (176)
Q Consensus       117 ~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~  173 (176)
                      . +-+...|..+-.+|...|++++|.+.|++..+....  +...+..+-..+...++
T Consensus       303 ~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~--~~~~~~~l~~~~~~~~~  356 (370)
T 1ihg_A          303 D-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE--DKAIQAELLKVKQKIKA  356 (370)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHH
T ss_pred             C-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHH
Confidence            4 346788899999999999999999999998876543  56666666666655443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.29  E-value=2.1e-05  Score=56.79  Aligned_cols=123  Identities=12%  Similarity=0.040  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchH----HHHHHHHHHHhccCHHHHHHHHHhcccCCCC-cc----Hh
Q 036589           53 HYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEI----IFCNVISFYGRARLLEHALQVFDEMPSFNVQ-RT----VK  123 (176)
Q Consensus        53 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~  123 (176)
                      .+...+..+...|++++|..++++........|+..    .+..+...+...|++++|+..|++..+.... ++    ..
T Consensus        77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~  156 (293)
T 3u3w_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence            344457788899999999999999987634445532    3345777777888999999999988753222 22    33


Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhc-----cccccchHHHHHHHHHhhccccCC
Q 036589          124 SLNTLLNALLTCGKLDRMKELFISFNLK-----AIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       124 ~~~~ll~~~~~~g~~~~a~~l~~~m~~~-----~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      +++.+-..|...|++++|...|++..+.     +...-...+|..+...|.+.|+++
T Consensus       157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~  213 (293)
T 3u3w_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYE  213 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHH
Confidence            6999999999999999999999998741     222023458888889998888764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.28  E-value=2.6e-05  Score=51.16  Aligned_cols=104  Identities=15%  Similarity=0.016  Sum_probs=86.1

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC--------C--------CCCchHHHHHHHHHHHhccCHHHHHHHHHhc
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDT--------R--------VIPEEIIFCNVISFYGRARLLEHALQVFDEM  113 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~--------g--------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  113 (176)
                      ....+......+.+.|++++|...|++.....        .        -..+...|..+..+|.+.|++++|+..++..
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            46678888999999999999999999987640        0        1123467888999999999999999999998


Q ss_pred             ccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589          114 PSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus       114 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~  154 (176)
                      .+.. +.+...|..+-.+|...|++++|.+.|+...+..+.
T Consensus        90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  129 (162)
T 3rkv_A           90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA  129 (162)
T ss_dssp             HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred             HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence            8654 446788999999999999999999999998876543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.28  E-value=1e-06  Score=63.76  Aligned_cols=164  Identities=13%  Similarity=-0.030  Sum_probs=116.0

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC----
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR----   82 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g----   82 (176)
                      ..+..+...+...|++++|.+.|++......     .....+.....+..+...+...|++++|...+++..+...    
T Consensus        44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~  118 (338)
T 3ro2_A           44 AIYSQLGNAYFYLHDYAKALEYHHHDLTLAR-----TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND  118 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh-----cccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC
Confidence            3567788899999999999999887511100     0001122356788899999999999999999998765411    


Q ss_pred             CCCchHHHHHHHHHHHhccC--------------------HHHHHHHHHhcccC----CC-CccHhHHHHHHHHHHhcCc
Q 036589           83 VIPEEIIFCNVISFYGRARL--------------------LEHALQVFDEMPSF----NV-QRTVKSLNTLLNALLTCGK  137 (176)
Q Consensus        83 ~~~~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~~~----~~-~p~~~~~~~ll~~~~~~g~  137 (176)
                      ......++..+...|...|+                    +++|...+++..+.    +. ......+..+...+...|+
T Consensus       119 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  198 (338)
T 3ro2_A          119 KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGN  198 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCC
Confidence            11124478889999999999                    99999998876531    11 1234568888899999999


Q ss_pred             HHHHHHHHHHHHhccc----cccchHHHHHHHHHhhccccCC
Q 036589          138 LDRMKELFISFNLKAI----AVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       138 ~~~a~~l~~~m~~~~~----~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      +++|.+.+++..+...    ......++..+...|...|+++
T Consensus       199 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  240 (338)
T 3ro2_A          199 FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE  240 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHH
Confidence            9999999998764321    1022447788888888877754

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.28  E-value=7e-06  Score=63.78  Aligned_cols=113  Identities=12%  Similarity=-0.013  Sum_probs=88.7

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCc
Q 036589           58 ITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGK  137 (176)
Q Consensus        58 i~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~  137 (176)
                      ...+.+.|++++|.+.|++..+.  ..-+...|..+..+|.+.|++++|++.|++..+.. +-+...|..+-.+|.+.|+
T Consensus        13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence            34556789999999999999876  23357888999999999999999999999988654 3467888999999999999


Q ss_pred             HHHHHHHHHHHHhccccccchHHHHHHHHH--hhccccCC
Q 036589          138 LDRMKELFISFNLKAIAVLDGLCSNLKIIM--NDSQVRVT  175 (176)
Q Consensus       138 ~~~a~~l~~~m~~~~~~~p~~~t~~~li~~--~~~~g~~~  175 (176)
                      +++|.+.|++..+....  +...+..+-.+  +.+.|+++
T Consensus        90 ~~eA~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~  127 (477)
T 1wao_1           90 FRAALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFE  127 (477)
T ss_dssp             HHHHHHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHH
Confidence            99999999998876554  33444444444  66666554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.25  E-value=1.3e-06  Score=67.82  Aligned_cols=121  Identities=7%  Similarity=-0.077  Sum_probs=92.2

Q ss_pred             HHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHH
Q 036589           12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFC   91 (176)
Q Consensus        12 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~   91 (176)
                      +-..+.+.|++++|++.|++....           .+-+...|..+..+|.+.|++++|.+.+++..+. . .-+...+.
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~-----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-~-p~~~~~~~   78 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIEL-----------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL-D-KKYIKGYY   78 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS-C-TTCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHh-----------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C-CCCHHHHH
Confidence            344567889999999999987222           1236889999999999999999999999999977 2 34567888


Q ss_pred             HHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHH--HHhcCcHHHHHHHHH
Q 036589           92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA--LLTCGKLDRMKELFI  146 (176)
Q Consensus        92 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~g~~~~a~~l~~  146 (176)
                      .+..+|.+.|++++|++.|++..+.. +-+...+..+-.+  +.+.|++++|.++++
T Consensus        79 ~lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           79 RRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            89999999999999999999987643 2234455555555  888899999999998

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.24  E-value=6.2e-06  Score=53.77  Aligned_cols=96  Identities=10%  Similarity=-0.123  Sum_probs=79.5

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      .+..+-..+.+.|++++|+..|+.....           .+.+...|..+..+|...|++++|...|++..+..  +-+.
T Consensus        23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~-----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~   89 (148)
T 2vgx_A           23 QLYSLAFNQYQSGXYEDAHXVFQALCVL-----------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD--IXEP   89 (148)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCT
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHc-----------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCc
Confidence            4566777889999999999999987221           13378889999999999999999999999998762  2355


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhcccC
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPSF  116 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~  116 (176)
                      ..+..+..+|...|++++|+..|+...+.
T Consensus        90 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           90 RFPFHAAECLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            67788999999999999999999988753

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.23  E-value=7.9e-06  Score=51.25  Aligned_cols=96  Identities=8%  Similarity=-0.071  Sum_probs=80.2

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      .|..+-..+.+.|++++|+..|++....           .+.+...|..+..++.+.|++++|...+++..+. . .-+.
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~-----------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~-p~~~   72 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKR-----------APEDARGYSNRAAALAKLMSFPEAIADCNKAIEK-D-PNFV   72 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHh-----------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C-CCcH
Confidence            4566778889999999999999997222           1236889999999999999999999999999976 2 2346


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhcccC
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPSF  116 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~  116 (176)
                      ..|..+..+|...|++++|+..|++..+.
T Consensus        73 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           73 RAYIRKATAQIAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence            77888999999999999999999988753

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.23  E-value=1.4e-05  Score=52.60  Aligned_cols=97  Identities=5%  Similarity=-0.128  Sum_probs=81.8

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~   86 (176)
                      ..+..+-..+.+.|++++|++.|++.. ..          .+-+...|..+..+|.+.|++++|...|++..+. . .-+
T Consensus        12 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~~----------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~-p~~   78 (164)
T 3sz7_A           12 DKLKSEGNAAMARKEYSKAIDLYTQAL-SI----------APANPIYLSNRAAAYSASGQHEKAAEDAELATVV-D-PKY   78 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HH----------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh----------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-C-CCC
Confidence            356777888999999999999999972 21          1237889999999999999999999999999977 2 335


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhcccC
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPSF  116 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  116 (176)
                      ...|..+..+|.+.|++++|+..|++..+.
T Consensus        79 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           79 SKAWSRLGLARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            778888999999999999999999988754

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.22  E-value=7.5e-06  Score=52.72  Aligned_cols=96  Identities=10%  Similarity=-0.090  Sum_probs=79.0

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      .+..+-..+.+.|++++|...|+.....           .+.+...|..+..++.+.|++++|...|+..... . +-+.
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-----------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-p~~~   86 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCML-----------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM-D-INEP   86 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCT
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHh-----------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C-CCCc
Confidence            3455677888999999999999997222           1237888999999999999999999999999977 2 2345


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhcccC
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPSF  116 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~  116 (176)
                      ..+..+..+|...|++++|+..|+...+.
T Consensus        87 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           87 RFPFHAAECHLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            66778999999999999999999988753

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.21  E-value=8.5e-06  Score=51.21  Aligned_cols=97  Identities=6%  Similarity=-0.127  Sum_probs=80.1

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~   86 (176)
                      ..+..+-..+.+.|++++|+..|+.....           .+-+...|..+..++...|++++|...|++..+. . .-+
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~-P~~   84 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQK-----------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML-D-PKD   84 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTC
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-CCC
Confidence            35666778899999999999999997222           1237888999999999999999999999999876 2 224


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhcccC
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPSF  116 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  116 (176)
                      ...+..+..+|.+.|++++|+..|++..+.
T Consensus        85 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           85 IAVHAALAVSHTNEHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            567788999999999999999999998754

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.20  E-value=5e-06  Score=55.31  Aligned_cols=109  Identities=6%  Similarity=-0.034  Sum_probs=85.0

Q ss_pred             HhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHH-HHhcCcH--
Q 036589           62 GRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA-LLTCGKL--  138 (176)
Q Consensus        62 ~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~--  138 (176)
                      ...|++++|...++...+..  ..+...|..+...|...|++++|+..|++..+.. +.+...+..+... +...|++  
T Consensus        21 ~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence            45788999999999888762  3456788889999999999999999999987543 2366777788888 7789998  


Q ss_pred             HHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589          139 DRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       139 ~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      ++|...|++..+....  +...+..+...|...|+++
T Consensus        98 ~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~  132 (177)
T 2e2e_A           98 AQTRAMIDKALALDSN--EITALMLLASDAFMQANYA  132 (177)
T ss_dssp             HHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcccHH
Confidence            9999999999887654  6778888888888888764

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.19  E-value=3.8e-05  Score=55.96  Aligned_cols=135  Identities=8%  Similarity=-0.058  Sum_probs=98.0

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCC-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC---CC
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKP-FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT---RV   83 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~---g~   83 (176)
                      +|+.+...|.+.|++++|+..|++...-..      ..+ ......+|..+...|.. |++++|...|++.....   +-
T Consensus        78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~------~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~  150 (307)
T 2ifu_A           78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYV------ENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER  150 (307)
T ss_dssp             HHHHHHHHHHHTTCGGGGHHHHHHHHHHHH------TTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH------HcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC
Confidence            466777888889999999888887411100      011 11124678888899988 99999999999877541   11


Q ss_pred             C-CchHHHHHHHHHHHhccCHHHHHHHHHhcccC----CCCcc-HhHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 036589           84 I-PEEIIFCNVISFYGRARLLEHALQVFDEMPSF----NVQRT-VKSLNTLLNALLTCGKLDRMKELFISFN  149 (176)
Q Consensus        84 ~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~ll~~~~~~g~~~~a~~l~~~m~  149 (176)
                      . ....+++.+...|.+.|++++|+..|++..+.    +..++ ...+..+...+...|++++|...|++..
T Consensus       151 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          151 LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            1 12467888999999999999999999987742    22222 2366677778888899999999999987

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.19  E-value=2.8e-05  Score=48.60  Aligned_cols=101  Identities=10%  Similarity=-0.116  Sum_probs=77.5

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc-
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE-   86 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~-   86 (176)
                      .+..+-..+.+.|++++|...|+......        +........+..+..++.+.|++++|...|++..+...-.+. 
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~   75 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELY--------PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKA   75 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHC--------CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCccc
Confidence            45566778889999999999999973221        222222367778899999999999999999999876211111 


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhcccC
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPSF  116 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  116 (176)
                      ...+..+..+|.+.|++++|...|++..+.
T Consensus        76 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           76 AGGLLKLGLSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            456777889999999999999999998854

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.18  E-value=6.4e-05  Score=55.78  Aligned_cols=160  Identities=11%  Similarity=-0.052  Sum_probs=107.4

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC---CCC
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT---RVI   84 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~---g~~   84 (176)
                      .+..+-..+...|++++|...+++......      ..+.......|..+...+...|++++|...+++.....   +..
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~  210 (373)
T 1hz4_A          137 LVRIRAQLLWAWARLDEAEASARSGIEVLS------SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH  210 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTT------TSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhh------ccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc
Confidence            345567788899999999999988521110      01111235678888899999999999999999887541   111


Q ss_pred             CchHHHH--HHHHHHHhccCHHHHHHHHHhcccCCCCc---cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc----cccc
Q 036589           85 PEEIIFC--NVISFYGRARLLEHALQVFDEMPSFNVQR---TVKSLNTLLNALLTCGKLDRMKELFISFNLK----AIAV  155 (176)
Q Consensus        85 ~~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~----~~~~  155 (176)
                      +......  ..+..+...|++++|...+++..+....+   ....+..+...+...|++++|.+++++....    +.. 
T Consensus       211 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~-  289 (373)
T 1hz4_A          211 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLM-  289 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-
T ss_pred             hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcch-
Confidence            1111111  23345789999999999999987543221   1235677788999999999999999987543    222 


Q ss_pred             cch-HHHHHHHHHhhccccC
Q 036589          156 LDG-LCSNLKIIMNDSQVRV  174 (176)
Q Consensus       156 p~~-~t~~~li~~~~~~g~~  174 (176)
                      ++. ..+..+-.++...|+.
T Consensus       290 ~~~~~~~~~la~~~~~~g~~  309 (373)
T 1hz4_A          290 SDLNRNLLLLNQLYWQAGRK  309 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTCH
T ss_pred             hhHHHHHHHHHHHHHHhCCH
Confidence            233 3566666777777664

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.17  E-value=5.5e-05  Score=57.77  Aligned_cols=153  Identities=13%  Similarity=-0.022  Sum_probs=96.5

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCC----CCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPN----ANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD--   80 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~--   80 (176)
                      ..||.|-..+...|++++|++.|++...-    ..      ....+....+|+.+..+|...|++++|...+++..+.  
T Consensus        52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~------~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~  125 (472)
T 4g1t_A           52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHA------DQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE  125 (472)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSG------GGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCc------cccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence            35788889999999999999998874110    00      0112235778999999999999999999999887642  


Q ss_pred             --CC-CCC-chHHHHHHHHHHHhc--cCHHHHHHHHHhcccCCCCcc-HhHHHHHHHH---HHhcCcHHHHHHHHHHHHh
Q 036589           81 --TR-VIP-EEIIFCNVISFYGRA--RLLEHALQVFDEMPSFNVQRT-VKSLNTLLNA---LLTCGKLDRMKELFISFNL  150 (176)
Q Consensus        81 --~g-~~~-~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~---~~~~g~~~~a~~l~~~m~~  150 (176)
                        .+ ..+ ...+++.+-.++.+.  +++++|+..|++..+..  |+ ...+..+...   +...++.++|++.|++..+
T Consensus       126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~  203 (472)
T 4g1t_A          126 KFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR  203 (472)
T ss_dssp             HSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH
T ss_pred             hcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence              01 112 234566555556554  46899999999877543  43 3333333333   3445666677777766655


Q ss_pred             ccccccchHHHHHHHHHhh
Q 036589          151 KAIAVLDGLCSNLKIIMND  169 (176)
Q Consensus       151 ~~~~~p~~~t~~~li~~~~  169 (176)
                      ....  +...+..+...+.
T Consensus       204 l~p~--~~~~~~~l~~~~~  220 (472)
T 4g1t_A          204 LNPD--NQYLKVLLALKLH  220 (472)
T ss_dssp             HCSS--CHHHHHHHHHHHH
T ss_pred             cCCc--chHHHHHHHHHHH
Confidence            4432  3444444443333

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.15  E-value=1.4e-05  Score=61.70  Aligned_cols=130  Identities=6%  Similarity=-0.064  Sum_probs=100.0

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCc-------------HHHHHHHHHHHHhcCChHHHHHHH
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYN-------------LLHYDLIITKLGRAKMFDEMQQIL   74 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~y~~li~~~~~~g~~~~a~~~~   74 (176)
                      .+..+-..|.+.|++++|+..|++.....        +. .++             ...|..+..+|.+.|++++|...+
T Consensus       270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~--------p~-~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~  340 (457)
T 1kt0_A          270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWL--------EM-EYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECC  340 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------TT-CCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHh--------cc-cccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            35566778899999999999999872211        11 111             578999999999999999999999


Q ss_pred             HHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHH-HHHHHH
Q 036589           75 HQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKE-LFISFN  149 (176)
Q Consensus        75 ~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~-l~~~m~  149 (176)
                      ++..+. . .-+...|..+-.+|.+.|++++|+..|++..+.. +-+...+..+-..+.+.++.+++.+ ++..|.
T Consensus       341 ~~al~~-~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f  413 (457)
T 1kt0_A          341 DKALGL-D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF  413 (457)
T ss_dssp             HHHHHH-S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHhc-C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999987 2 3467788889999999999999999999998654 3356778888888999999887764 455553

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.13  E-value=6.6e-06  Score=61.04  Aligned_cols=129  Identities=10%  Similarity=-0.042  Sum_probs=76.0

Q ss_pred             HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcH------------------HHHHHHHHHHHhcCChHHH
Q 036589            9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNL------------------LHYDLIITKLGRAKMFDEM   70 (176)
Q Consensus         9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~y~~li~~~~~~g~~~~a   70 (176)
                      +..+-..+.+.|++++|+..|++.. .           ..|+.                  ..|..+..+|.+.|++++|
T Consensus       182 ~~~~g~~~~~~g~~~~A~~~y~~Al-~-----------~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A  249 (338)
T 2if4_A          182 RKMDGNSLFKEEKLEEAMQQYEMAI-A-----------YMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEA  249 (338)
T ss_dssp             HHHHHHHTCSSSCCHHHHHHHHHHH-H-----------HSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH-H-----------HhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            4555677788999999999999862 2           12232                  2788899999999999999


Q ss_pred             HHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCc-cHhHHHHHHHH-HHhcCcHHHHHHHHHHH
Q 036589           71 QQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR-TVKSLNTLLNA-LLTCGKLDRMKELFISF  148 (176)
Q Consensus        71 ~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~-~~~~g~~~~a~~l~~~m  148 (176)
                      ...+++..+. . .-+...|..+..+|...|++++|+..|++..+..  | +...+..+... ....+..+++.++|..|
T Consensus       250 ~~~~~~al~~-~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~--p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~  325 (338)
T 2if4_A          250 IGHCNIVLTE-E-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA--PDDKAIRRELRALAEQEKALYQKQKEMYKGI  325 (338)
T ss_dssp             HHHHHHHHHH-C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------
T ss_pred             HHHHHHHHHh-C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999876 2 3466788889999999999999999999988643  4 34445544444 23456778888899888


Q ss_pred             Hhccc
Q 036589          149 NLKAI  153 (176)
Q Consensus       149 ~~~~~  153 (176)
                      .....
T Consensus       326 l~~~p  330 (338)
T 2if4_A          326 FKGKD  330 (338)
T ss_dssp             -----
T ss_pred             hCCCC
Confidence            76533

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.13  E-value=1.3e-05  Score=50.83  Aligned_cols=105  Identities=16%  Similarity=0.044  Sum_probs=80.1

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC-CCCc
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR-VIPE   86 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g-~~~~   86 (176)
                      .+..+=..+.+.|++++|++.|++.. +-          .+-+...|..+..+|.+.|++++|.+.+++..+... ..++
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al-~~----------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~   78 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAI-EL----------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD   78 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH-HH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH-Hh----------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh
Confidence            35566778899999999999999972 21          123688899999999999999999999999876411 1111


Q ss_pred             ----hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHH
Q 036589           87 ----EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSL  125 (176)
Q Consensus        87 ----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  125 (176)
                          ..+|..+-.++...|++++|++.|++..+.  .||....
T Consensus        79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~  119 (127)
T 4gcn_A           79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV  119 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence                246777888999999999999999987753  3565443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.12  E-value=4.3e-05  Score=52.65  Aligned_cols=130  Identities=14%  Similarity=-0.054  Sum_probs=102.0

Q ss_pred             CHHHHHHHHHhcc----ChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHhh
Q 036589            8 SPFRLASLLHLQK----HPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGR----AKMFDEMQQILHQLKH   79 (176)
Q Consensus         8 ~~~~l~~~~~~~~----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~   79 (176)
                      .+..|-..|.. +    ++++|++.|+.. .+.+            ++..+..|...|..    .+++++|...|++..+
T Consensus        52 a~~~lg~~y~~-~g~~~~~~~A~~~~~~A-~~~g------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  117 (212)
T 3rjv_A           52 ALALLAQLKIR-NPQQADYPQARQLAEKA-VEAG------------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR  117 (212)
T ss_dssp             HHHHHHHHTTS-STTSCCHHHHHHHHHHH-HHTT------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHc-CCCCCCHHHHHHHHHHH-HHCC------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence            44555556666 6    899999999998 4422            67888888888887    8899999999999997


Q ss_pred             cCCCC-CchHHHHHHHHHHHh----ccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhc-C-----cHHHHHHHHHHH
Q 036589           80 DTRVI-PEEIIFCNVISFYGR----ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTC-G-----KLDRMKELFISF  148 (176)
Q Consensus        80 ~~g~~-~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-g-----~~~~a~~l~~~m  148 (176)
                      . |.. .+...+..|-..|..    .+++++|+..|++..+.  ..+...+..|-..|... |     ++++|.+.|+..
T Consensus       118 ~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A  194 (212)
T 3rjv_A          118 D-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS  194 (212)
T ss_dssp             S-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred             c-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            7 432 136777788888888    78999999999998865  23555677777777654 3     899999999999


Q ss_pred             Hhcccc
Q 036589          149 NLKAIA  154 (176)
Q Consensus       149 ~~~~~~  154 (176)
                      .+.|.+
T Consensus       195 ~~~g~~  200 (212)
T 3rjv_A          195 CLEGFD  200 (212)
T ss_dssp             HHHTCH
T ss_pred             HHcCCH
Confidence            988775

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.11  E-value=6e-06  Score=51.34  Aligned_cols=89  Identities=4%  Similarity=-0.069  Sum_probs=67.6

Q ss_pred             hccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHH
Q 036589           18 LQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFY   97 (176)
Q Consensus        18 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~   97 (176)
                      ..|++++|+..|++.....        ..-+-+...|..+..+|.+.|++++|...|++..+. . +-+...+..+..+|
T Consensus         2 ~~g~~~~A~~~~~~al~~~--------~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~-~-p~~~~~~~~l~~~~   71 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASG--------LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ-F-PNHQALRVFYAMVL   71 (117)
T ss_dssp             -----CCCHHHHHHHHSSC--------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcC--------CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-CCchHHHHHHHHHH
Confidence            4688999999999972221        011335678899999999999999999999999987 2 23467778899999


Q ss_pred             HhccCHHHHHHHHHhcccC
Q 036589           98 GRARLLEHALQVFDEMPSF  116 (176)
Q Consensus        98 ~~~g~~~~a~~~~~~m~~~  116 (176)
                      .+.|++++|+..|++..+.
T Consensus        72 ~~~g~~~~A~~~~~~al~~   90 (117)
T 3k9i_A           72 YNLGRYEQGVELLLKIIAE   90 (117)
T ss_dssp             HHHTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            9999999999999988753

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.07  E-value=0.00015  Score=56.16  Aligned_cols=112  Identities=7%  Similarity=-0.014  Sum_probs=56.9

Q ss_pred             ccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCCCCchHHHHHHH
Q 036589           19 QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGR----AKMFDEMQQILHQLKHDTRVIPEEIIFCNVI   94 (176)
Q Consensus        19 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li   94 (176)
                      .+++++|+..|+.. .+.+            +...+..+...|..    .+++++|.+.|++..+. |   +...+..|-
T Consensus        56 ~~~~~~A~~~~~~a-~~~~------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg  118 (490)
T 2xm6_A           56 TKDLTQAMDWFRRA-AEQG------------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-G---LPQAQQNLG  118 (490)
T ss_dssp             CCCHHHHHHHHHHH-HHTT------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHH
T ss_pred             CcCHHHHHHHHHHH-HHCC------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHH
Confidence            55566666666554 2211            34455555555555    55566666666655544 2   333444444


Q ss_pred             HHHHh----ccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHh----cCcHHHHHHHHHHHHh
Q 036589           95 SFYGR----ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLT----CGKLDRMKELFISFNL  150 (176)
Q Consensus        95 ~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~l~~~m~~  150 (176)
                      ..|..    .+++++|+..|++..+.|   +...+..|-..|..    .+++++|.+.|++..+
T Consensus       119 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~  179 (490)
T 2xm6_A          119 VMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAE  179 (490)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            55544    455555555555554433   33444444444444    4455555555555444

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.07  E-value=3.1e-05  Score=47.72  Aligned_cols=99  Identities=11%  Similarity=0.020  Sum_probs=63.6

Q ss_pred             HHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 036589           69 EMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF  148 (176)
Q Consensus        69 ~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m  148 (176)
                      .|...|++..+.  -.-+...+..+...|...|++++|+..|++..+.. +.+...|..+-..|...|++++|.+.|++.
T Consensus         3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            355666666654  12345667777788888888888888888776543 234566777778888888888888888877


Q ss_pred             HhccccccchHHHHHHHHHhhc
Q 036589          149 NLKAIAVLDGLCSNLKIIMNDS  170 (176)
Q Consensus       149 ~~~~~~~p~~~t~~~li~~~~~  170 (176)
                      .+......+......+...+.+
T Consensus        80 l~~~~~~~~~~~~~~l~~~l~~  101 (115)
T 2kat_A           80 LAAAQSRGDQQVVKELQVFLRR  101 (115)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhccccccHHHHHHHHHHHHH
Confidence            6543321344445544444443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.07  E-value=2.5e-05  Score=50.24  Aligned_cols=126  Identities=10%  Similarity=-0.058  Sum_probs=92.0

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC----CCCchHHHHHHHHHHHhccCHHHHHHHHHhcccC----CCCc-
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR----VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF----NVQR-  120 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-  120 (176)
                      ...++..+...+...|++++|...+++..+...    ......++..+...|...|++++|...|++..+.    +..+ 
T Consensus         8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~   87 (164)
T 3ro3_A            8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHH
Confidence            345788888999999999999999998776411    1111257788999999999999999999987632    1111 


Q ss_pred             cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc----cccccchHHHHHHHHHhhccccCC
Q 036589          121 TVKSLNTLLNALLTCGKLDRMKELFISFNLK----AIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       121 ~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~----~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      ....+..+...+...|++++|.+.+++..+.    +.......++..+...|...|+++
T Consensus        88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  146 (164)
T 3ro3_A           88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHD  146 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHH
Confidence            2456778888999999999999999987643    111023556777777777777653

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.06  E-value=3.2e-05  Score=59.10  Aligned_cols=156  Identities=13%  Similarity=0.004  Sum_probs=107.1

Q ss_pred             CCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhc-------------------CC
Q 036589            6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRA-------------------KM   66 (176)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~-------------------g~   66 (176)
                      +..+..+-..|.+.|++++|+..|++. .+.          .+-+...|..+..+|...                   +.
T Consensus       247 ~~~~~~lg~~~~~~~~~~~A~~~~~~a-l~~----------~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~  315 (472)
T 4g1t_A          247 TDVLRSAAKFYRRKDEPDKAIELLKKA-LEY----------IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLEL  315 (472)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHH----------STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHH-HHh----------CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Confidence            345777888999999999999999997 221          122566777666665432                   33


Q ss_pred             hHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHh--HHHHHHH-HHHhcCcHHHHHH
Q 036589           67 FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK--SLNTLLN-ALLTCGKLDRMKE  143 (176)
Q Consensus        67 ~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~-~~~~~g~~~~a~~  143 (176)
                      ++.|...+++..+.  -..+...+..+...|.+.|++++|+..|++..+....+...  .+..+.. .+...|+.++|+.
T Consensus       316 ~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~  393 (472)
T 4g1t_A          316 IGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIH  393 (472)
T ss_dssp             HHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred             HHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            56777788877765  23345677889999999999999999999987654333221  2222222 2346789999999


Q ss_pred             HHHHHHhccc-----------------------cccchHHHHHHHHHhhccccCC
Q 036589          144 LFISFNLKAI-----------------------AVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       144 l~~~m~~~~~-----------------------~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      .|.+..+...                       + .+..+|..|-..|...|+++
T Consensus       394 ~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p-~~~~~~~~LG~~~~~~g~~~  447 (472)
T 4g1t_A          394 HFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNG-ADSEALHVLAFLQELNEKMQ  447 (472)
T ss_dssp             HHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHH
Confidence            8887654321                       2 35678888888888887765

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.06  E-value=6.7e-05  Score=45.42  Aligned_cols=65  Identities=11%  Similarity=0.052  Sum_probs=47.7

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccC
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF  116 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  116 (176)
                      +...|..+...+.+.|++++|...|++..+. . +.+...+..+..+|.+.|++++|+..|++..+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA-Q-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            5566777777788888888888888887765 1 234566777777888888888888888877654

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.05  E-value=0.00029  Score=54.50  Aligned_cols=125  Identities=9%  Similarity=-0.100  Sum_probs=86.4

Q ss_pred             CHHHHHHHHHh----ccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHhh
Q 036589            8 SPFRLASLLHL----QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGR----AKMFDEMQQILHQLKH   79 (176)
Q Consensus         8 ~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~   79 (176)
                      .+..|-..|..    .+++++|.+.|++. .+.+            +...+..+...|..    .+++++|...|++..+
T Consensus        77 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a-~~~~------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~  143 (490)
T 2xm6_A           77 AEYVLGLRYMNGEGVPQDYAQAVIWYKKA-ALKG------------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE  143 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHH-HHTT------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HHCC------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            34555566666    78888888888887 3321            56667777777777    6788888888888776


Q ss_pred             cCCCCCchHHHHHHHHHHHh----ccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHh----cCcHHHHHHHHHHHHhc
Q 036589           80 DTRVIPEEIIFCNVISFYGR----ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLT----CGKLDRMKELFISFNLK  151 (176)
Q Consensus        80 ~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~l~~~m~~~  151 (176)
                      . |   +...+..|-..|..    .+++++|++.|++..+.|   +...+..|-..|..    .++.++|.+.|++..+.
T Consensus       144 ~-~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~  216 (490)
T 2xm6_A          144 Q-G---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS  216 (490)
T ss_dssp             T-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             C-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC
Confidence            6 4   34556666666766    667888888887776653   56666666677766    67777777777776654


Q ss_pred             c
Q 036589          152 A  152 (176)
Q Consensus       152 ~  152 (176)
                      +
T Consensus       217 ~  217 (490)
T 2xm6_A          217 G  217 (490)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.04  E-value=0.00013  Score=63.11  Aligned_cols=134  Identities=13%  Similarity=0.047  Sum_probs=90.1

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      ..+.+..+|.+.+++++...+.+..                 +...|..+...|...|++++|..+|+..          
T Consensus      1169 Idt~LafaYAKl~rleele~fI~~~-----------------n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------- 1221 (1630)
T 1xi4_A         1169 VETELIFALAKTNRLAELEEFINGP-----------------NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------- 1221 (1630)
T ss_pred             ccHHHHHHHHhhcCHHHHHHHHhCC-----------------CHHHHHHHHHHHHhcCCHHHHHHHHHhh----------
Confidence            3445788888888877544443211                 4456666888888888888888888874          


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhcccCC------------------------CCccHhHHHHHHHHHHhcCcHHHHHH
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPSFN------------------------VQRTVKSLNTLLNALLTCGKLDRMKE  143 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~------------------------~~p~~~~~~~ll~~~~~~g~~~~a~~  143 (176)
                      ..|..+..+|++.|++++|++.+++..+..                        +..+...+..++..|.+.|.+++|+.
T Consensus      1222 ~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~ 1301 (1630)
T 1xi4_A         1222 SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELIT 1301 (1630)
T ss_pred             hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHH
Confidence            267778888888888888887776654211                        11244456678888888889999888


Q ss_pred             HHHHHHhccccccchHHHHHHHHHhhc
Q 036589          144 LFISFNLKAIAVLDGLCSNLKIIMNDS  170 (176)
Q Consensus       144 l~~~m~~~~~~~p~~~t~~~li~~~~~  170 (176)
                      +++.-.... + -....|+-|-..|++
T Consensus      1302 LlE~aL~Le-r-aH~gmftELaiLyaK 1326 (1630)
T 1xi4_A         1302 MLEAALGLE-R-AHMGMFTELAILYSK 1326 (1630)
T ss_pred             HHHHHhccC-h-hHhHHHHHHHHHHHh
Confidence            887766544 2 355566666655554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.04  E-value=8.2e-05  Score=43.31  Aligned_cols=62  Identities=15%  Similarity=0.173  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589           89 IFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLK  151 (176)
Q Consensus        89 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~  151 (176)
                      .+..+...+.+.|++++|+..|++..+.. +.+...+..+-..+.+.|++++|.+.|++..+.
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            33444444444555555555554444321 123344444445555555555555555554443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.03  E-value=0.00014  Score=48.00  Aligned_cols=114  Identities=12%  Similarity=-0.014  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC-----c-----hHHHHHHHHHHHhccCHHHHHHHHHhcccC----
Q 036589           51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP-----E-----EIIFCNVISFYGRARLLEHALQVFDEMPSF----  116 (176)
Q Consensus        51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~-----~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----  116 (176)
                      ...+......+.+.|++++|...|++..+...-.|     +     ...|+.+-.++.+.|++++|+..|+...+.    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            44566677888899999999999999887621111     2     238999999999999999999999988864    


Q ss_pred             -CCCc-cHhHH----HHHHHHHHhcCcHHHHHHHHHHHHh-----ccccccchHHHHHHH
Q 036589          117 -NVQR-TVKSL----NTLLNALLTCGKLDRMKELFISFNL-----KAIAVLDGLCSNLKI  165 (176)
Q Consensus       117 -~~~p-~~~~~----~~ll~~~~~~g~~~~a~~l~~~m~~-----~~~~~p~~~t~~~li  165 (176)
                       .+.| +...|    ...-.++...|++++|+..|++..+     .++. +........+
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~-~~~~~~~~~~  149 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET-PGKERMMEVA  149 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC-TTHHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH-HHHHHHHHHH
Confidence             1134 45667    8888999999999999999999864     3554 4444444333

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.03  E-value=5.9e-05  Score=55.98  Aligned_cols=154  Identities=11%  Similarity=-0.009  Sum_probs=104.1

Q ss_pred             HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCC--cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC---CC-CCc
Q 036589           13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRY--NLLHYDLIITKLGRAKMFDEMQQILHQLKHDT---RV-IPE   86 (176)
Q Consensus        13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~---g~-~~~   86 (176)
                      -..+...|++++|...+++.....        +...+  -...++.+...+...|++++|.+.+++.....   +. ...
T Consensus        21 a~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   92 (373)
T 1hz4_A           21 AQVAINDGNPDEAERLAKLALEEL--------PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA   92 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTC--------CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcC--------CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            445667899999999988852221        11111  12356677788889999999999998877531   11 111


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhccc----CCCC--c-cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccc----cc
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPS----FNVQ--R-TVKSLNTLLNALLTCGKLDRMKELFISFNLKAI----AV  155 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~--p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~----~~  155 (176)
                      ..+++.+...+...|++++|...+++..+    .+..  | ....+..+-..+...|++++|.+.+++..+...    . 
T Consensus        93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-  171 (373)
T 1hz4_A           93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ-  171 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGG-
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcH-
Confidence            23456778888999999999999987763    2221  2 344566777888999999999999998765322    2 


Q ss_pred             cchHHHHHHHHHhhccccCC
Q 036589          156 LDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       156 p~~~t~~~li~~~~~~g~~~  175 (176)
                      ....+|..+...+...|+++
T Consensus       172 ~~~~~~~~la~~~~~~g~~~  191 (373)
T 1hz4_A          172 QQLQCLAMLIQCSLARGDLD  191 (373)
T ss_dssp             GGHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHcCCHH
Confidence            12456777777777777654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.02  E-value=3e-05  Score=58.30  Aligned_cols=132  Identities=7%  Similarity=-0.064  Sum_probs=95.7

Q ss_pred             HHHHHHHHHhccChhHHHHhhcCCCCCCCC-----CCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036589            9 PFRLASLLHLQKHPKLALQLFKNPNPNAND-----TEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV   83 (176)
Q Consensus         9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~   83 (176)
                      +..+-..+.+.|++++|++.|++.......     .........+.+...|..+..+|.+.|++++|...+++..+. . 
T Consensus       226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-~-  303 (370)
T 1ihg_A          226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-D-  303 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C-
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-C-
Confidence            566778889999999999999987220000     000000011225678889999999999999999999999976 2 


Q ss_pred             CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHH
Q 036589           84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKE  143 (176)
Q Consensus        84 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~  143 (176)
                      .-+...+..+..+|.+.|++++|+..|++..+.. +-+...+..+...+.+.++.+++.+
T Consensus       304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            2356788889999999999999999999988653 2256667777777777777776654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.01  E-value=4.6e-05  Score=45.97  Aligned_cols=63  Identities=6%  Similarity=0.038  Sum_probs=39.4

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcc
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP  114 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  114 (176)
                      +...|..+..++.+.|++++|...|++..+. . .-+...|..+-.+|.+.|++++|++.|++..
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVET-D-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5556666666666677777777777666655 1 1233455666666666677766666666654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.00  E-value=8.3e-05  Score=58.00  Aligned_cols=112  Identities=4%  Similarity=-0.062  Sum_probs=82.0

Q ss_pred             HHhcCChHHHHHHHHHHhhc----CC--CCCchHHHHHHHHHHHhccCHHHHHHHHHhccc-----CC--CCccHhHHHH
Q 036589           61 LGRAKMFDEMQQILHQLKHD----TR--VIPEEIIFCNVISFYGRARLLEHALQVFDEMPS-----FN--VQRTVKSLNT  127 (176)
Q Consensus        61 ~~~~g~~~~a~~~~~~m~~~----~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~--~~p~~~~~~~  127 (176)
                      +...|++++|+.++++..+.    .|  ..-...+++.|..+|...|++++|+.++++..+     .|  .+-...+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            45689999999999887654    11  222457889999999999999999998887653     22  2335678999


Q ss_pred             HHHHHHhcCcHHHHHHHHHHHHh-----ccccccchHHH-HHHHHHhhccc
Q 036589          128 LLNALLTCGKLDRMKELFISFNL-----KAIAVLDGLCS-NLKIIMNDSQV  172 (176)
Q Consensus       128 ll~~~~~~g~~~~a~~l~~~m~~-----~~~~~p~~~t~-~~li~~~~~~g  172 (176)
                      |-..|...|++++|+.++++..+     .|..+|++..- +.+-.++...+
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~  449 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELR  449 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988753     46666665543 34444444433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.00  E-value=9.4e-06  Score=49.36  Aligned_cols=89  Identities=8%  Similarity=-0.053  Sum_probs=70.7

Q ss_pred             chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccc----hHHH
Q 036589           86 EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLD----GLCS  161 (176)
Q Consensus        86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~----~~t~  161 (176)
                      +...+..+...+.+.|++++|+..|++..+.. +.+...|..+-.++.+.|++++|.+.|++..+.....++    ...+
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~   81 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ   81 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence            45677888999999999999999999988653 346788899999999999999999999999876543011    5667


Q ss_pred             HHHHHHhhccccCC
Q 036589          162 NLKIIMNDSQVRVT  175 (176)
Q Consensus       162 ~~li~~~~~~g~~~  175 (176)
                      ..+-.++...|+++
T Consensus        82 ~~~~~~~~~~~~~~   95 (111)
T 2l6j_A           82 YRLELAQGAVGSVQ   95 (111)
T ss_dssp             HHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHhHh
Confidence            77777777776654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.93  E-value=4.6e-05  Score=56.45  Aligned_cols=109  Identities=12%  Similarity=0.030  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchH------------------HHHHHHHHHHhccCHHHHHHHHHh
Q 036589           51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEI------------------IFCNVISFYGRARLLEHALQVFDE  112 (176)
Q Consensus        51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~------------------~~~~li~~~~~~g~~~~a~~~~~~  112 (176)
                      ...|..+...+.+.|++++|...|++....   .|+..                  .|..+..+|.+.|++++|+..|++
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~  255 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI  255 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            445777778888999999999999998765   24433                  788899999999999999999999


Q ss_pred             cccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589          113 MPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI  165 (176)
Q Consensus       113 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li  165 (176)
                      ..+.. +.+...|..+-.+|...|++++|.+.|++..+....  +...+..+.
T Consensus       256 al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~--~~~a~~~L~  305 (338)
T 2if4_A          256 VLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD--DKAIRRELR  305 (338)
T ss_dssp             HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred             HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--CHHHHHHHH
Confidence            88653 346788999999999999999999999998765433  334444433

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.90  E-value=0.00025  Score=54.37  Aligned_cols=105  Identities=10%  Similarity=-0.090  Sum_probs=79.9

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhcCC------CCCchHHHHHHHHHHHhccCHHHHHHHHHhccc-----CC--CCccH
Q 036589           56 LIITKLGRAKMFDEMQQILHQLKHDTR------VIPEEIIFCNVISFYGRARLLEHALQVFDEMPS-----FN--VQRTV  122 (176)
Q Consensus        56 ~li~~~~~~g~~~~a~~~~~~m~~~~g------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~--~~p~~  122 (176)
                      ..+..+.+.|++++|+.++++..+...      ......+++.|..+|...|++++|+.++++..+     .|  .+-..
T Consensus       292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a  371 (429)
T 3qwp_A          292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRG  371 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred             HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHH
Confidence            345566678999999999998875411      223457889999999999999999999987653     22  23356


Q ss_pred             hHHHHHHHHHHhcCcHHHHHHHHHHHHh-----ccccccchHH
Q 036589          123 KSLNTLLNALLTCGKLDRMKELFISFNL-----KAIAVLDGLC  160 (176)
Q Consensus       123 ~~~~~ll~~~~~~g~~~~a~~l~~~m~~-----~~~~~p~~~t  160 (176)
                      .+++.|-..|...|++++|+.++++..+     .|..+|.+..
T Consensus       372 ~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  414 (429)
T 3qwp_A          372 VQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED  414 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence            7799999999999999999999988753     4655555443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.88  E-value=0.0003  Score=53.10  Aligned_cols=162  Identities=7%  Similarity=-0.091  Sum_probs=101.2

Q ss_pred             HHHHHhccChhHHHHhhcCCCCCCCCCCCCCC--CCC-----CCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 036589           13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPL--KPF-----RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP   85 (176)
Q Consensus        13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~   85 (176)
                      .+.+.+.|++++|++.|........ ......  ...     ......+..+...|.+.|++++|.+.++......+-.+
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~   89 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDS-SQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA   89 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCC-CSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCc-ccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence            4667889999999999988622210 000000  000     00123477889999999999999999998876422222


Q ss_pred             ch----HHHHHHHHHHHhccCHHHHHHHHHhccc----CCCCc-cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccc---
Q 036589           86 EE----IIFCNVISFYGRARLLEHALQVFDEMPS----FNVQR-TVKSLNTLLNALLTCGKLDRMKELFISFNLKAI---  153 (176)
Q Consensus        86 ~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~---  153 (176)
                      +.    .+.+.+-..+...|++++|..++++...    .+..+ -..++..+...|...|++++|..++.+....-.   
T Consensus        90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~  169 (434)
T 4b4t_Q           90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD  169 (434)
T ss_dssp             HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred             chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence            22    2233333444456788888888876542    22222 245677888888899999999998888753211   


Q ss_pred             -cccchHHHHHHHHHhhccccCC
Q 036589          154 -AVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       154 -~~p~~~t~~~li~~~~~~g~~~  175 (176)
                       ..-...+|..+...|...|+++
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~  192 (434)
T 4b4t_Q          170 DKPSLVDVHLLESKVYHKLRNLA  192 (434)
T ss_dssp             CSTHHHHHHHHHHHHHHHTTCHH
T ss_pred             cchhHHHHHHHHHHHHHHhCcHH
Confidence             1023557777777777777653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.84  E-value=5.6e-05  Score=54.47  Aligned_cols=96  Identities=5%  Similarity=-0.165  Sum_probs=79.9

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~   86 (176)
                      ..+..+-..+.+.|++++|+..|+.....           .+.+...|..+..++.+.|++++|...+++..+.  -.-+
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~   71 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAITR-----------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQS   71 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCC
Confidence            45667778899999999999999987221           1237888999999999999999999999999876  2345


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhccc
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPS  115 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~  115 (176)
                      ...+..+..+|...|++++|+..|++..+
T Consensus        72 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~  100 (281)
T 2c2l_A           72 VKAHFFLGQCQLEMESYDEAIANLQRAYS  100 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            67888899999999999999999988764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.83  E-value=0.00012  Score=47.81  Aligned_cols=105  Identities=13%  Similarity=-0.003  Sum_probs=78.2

Q ss_pred             HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCC-CCC-------CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036589            9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPP-LKP-------FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD   80 (176)
Q Consensus         9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~   80 (176)
                      +...-..+.+.|++++|+..|+....... ..... .+.       .+-+...|..+..+|.+.|++++|...++...+.
T Consensus        14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~   92 (162)
T 3rkv_A           14 LRQKGNELFVQKDYKEAIDAYRDALTRLD-TLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR   92 (162)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence            45566788899999999999988621100 00000 000       1224568889999999999999999999999876


Q ss_pred             CCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccC
Q 036589           81 TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF  116 (176)
Q Consensus        81 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  116 (176)
                       . +.+...|..+..+|...|++++|+..|++..+.
T Consensus        93 -~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           93 -E-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             -S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -C-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence             2 345678888999999999999999999998865

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.79  E-value=0.00043  Score=40.11  Aligned_cols=82  Identities=10%  Similarity=0.060  Sum_probs=64.3

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL  129 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  129 (176)
                      +...|..+...+...|++++|...|++..+. . ..+...+..+..+|.+.|++++|+..|++..+.. +.+...+..+-
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~   84 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLG   84 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-C-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence            4667888899999999999999999999876 2 2356778889999999999999999999987643 23455555555


Q ss_pred             HHHHh
Q 036589          130 NALLT  134 (176)
Q Consensus       130 ~~~~~  134 (176)
                      ..+.+
T Consensus        85 ~~~~~   89 (91)
T 1na3_A           85 NAKQK   89 (91)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            55544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.78  E-value=0.00012  Score=56.28  Aligned_cols=97  Identities=7%  Similarity=-0.126  Sum_probs=74.0

Q ss_pred             cCChHHHHHHHHHHhhc----CC--CCCchHHHHHHHHHHHhccCHHHHHHHHHhccc-----CC--CCccHhHHHHHHH
Q 036589           64 AKMFDEMQQILHQLKHD----TR--VIPEEIIFCNVISFYGRARLLEHALQVFDEMPS-----FN--VQRTVKSLNTLLN  130 (176)
Q Consensus        64 ~g~~~~a~~~~~~m~~~----~g--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~--~~p~~~~~~~ll~  130 (176)
                      .|++++|+.++++..+.    .|  ......+++.|..+|...|++++|+.++++..+     .|  .+-...+++.|-.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            57889999999887653    11  223457899999999999999999999988753     22  2335677999999


Q ss_pred             HHHhcCcHHHHHHHHHHHHh-----ccccccchHH
Q 036589          131 ALLTCGKLDRMKELFISFNL-----KAIAVLDGLC  160 (176)
Q Consensus       131 ~~~~~g~~~~a~~l~~~m~~-----~~~~~p~~~t  160 (176)
                      .|...|++++|+.++++..+     .|..+|++..
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  425 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE  425 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            99999999999999988753     4555555443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.76  E-value=0.00034  Score=50.57  Aligned_cols=118  Identities=8%  Similarity=-0.058  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCcc--HhHHHHHHH
Q 036589           53 HYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRT--VKSLNTLLN  130 (176)
Q Consensus        53 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~  130 (176)
                      .+-.....+...|++++|.++|+.+... +  |+......+-..+.+.++|++|+..|+...+.. .|.  ...+..+-.
T Consensus       104 l~LayA~~L~~~g~y~eA~~~l~~~~~~-~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~  179 (282)
T 4f3v_A          104 ITMGFAACEAAQGNYADAMEALEAAPVA-G--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGV  179 (282)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTSSCCT-T--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhc-C--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHH
Confidence            3444667788999999999999999865 3  544466667778999999999999999665432 121  235677788


Q ss_pred             HHHhcCcHHHHHHHHHHHHhcccccc--chHHHHHHHHHhhccccCC
Q 036589          131 ALLTCGKLDRMKELFISFNLKAIAVL--DGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       131 ~~~~~g~~~~a~~l~~~m~~~~~~~p--~~~t~~~li~~~~~~g~~~  175 (176)
                      ++...|++++|++.|++....... |  ........-.++.+.|+.+
T Consensus       180 al~~LG~~~eAl~~l~~a~~g~~~-P~~~~da~~~~glaL~~lGr~d  225 (282)
T 4f3v_A          180 AAANLALFTEAERRLTEANDSPAG-EACARAIAWYLAMARRSQGNES  225 (282)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTSTTT-TTTHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHCCCHHHHHHHHHHHhcCCCC-ccccHHHHHHHHHHHHHcCCHH
Confidence            999999999999999998765542 3  3335555566666666654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.70  E-value=0.00011  Score=56.36  Aligned_cols=100  Identities=8%  Similarity=-0.079  Sum_probs=74.6

Q ss_pred             HHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc----CC--CCC
Q 036589           12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD----TR--VIP   85 (176)
Q Consensus        12 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----~g--~~~   85 (176)
                      .+..+.+.|++++|+.++++......   ....+..+....+++.+...|...|++++|+.++++...-    .|  ..-
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~~~~---~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~  369 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIISSNS---ERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV  369 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTCSS---CCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhcc---CcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH
Confidence            35667788999999998876522211   0112333345678999999999999999999999987643    12  333


Q ss_pred             chHHHHHHHHHHHhccCHHHHHHHHHhcc
Q 036589           86 EEIIFCNVISFYGRARLLEHALQVFDEMP  114 (176)
Q Consensus        86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~  114 (176)
                      ...+++.|-..|...|++++|+.+|++..
T Consensus       370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          370 RGVQVMKVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            45778999999999999999999998765

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.66  E-value=0.00041  Score=52.33  Aligned_cols=157  Identities=9%  Similarity=0.018  Sum_probs=106.2

Q ss_pred             HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcH----HHHHHHHHHHHhcCChHHHHHHHHHHhhc----
Q 036589            9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNL----LHYDLIITKLGRAKMFDEMQQILHQLKHD----   80 (176)
Q Consensus         9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~----~~y~~li~~~~~~g~~~~a~~~~~~m~~~----   80 (176)
                      +..+...|...|++++|.+++....+-.        ..+ ++.    .+.+.+-..+...|+++.+..+++.....    
T Consensus        58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~--------~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  128 (434)
T 4b4t_Q           58 ILELGQLYVTMGAKDKLREFIPHSTEYM--------MQF-AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE  128 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTHHHH--------HTS-CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHH--------HHc-cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence            5678899999999999999998872211        111 122    22333334444678899999988887643    


Q ss_pred             CCCCCchHHHHHHHHHHHhccCHHHHHHHHHhccc----CCCCc-cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc--cc
Q 036589           81 TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS----FNVQR-TVKSLNTLLNALLTCGKLDRMKELFISFNLK--AI  153 (176)
Q Consensus        81 ~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~--~~  153 (176)
                      .....-..++..+...|...|++++|..++++...    .+-.+ ....+..++..|...|++++|..+++.....  .+
T Consensus       129 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~  208 (434)
T 4b4t_Q          129 KRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSI  208 (434)
T ss_dssp             SCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred             CccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcC
Confidence            12223356778899999999999999999987653    11112 3457888999999999999999999887542  22


Q ss_pred             ccc-c--hHHHHHHHHHhhccccC
Q 036589          154 AVL-D--GLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       154 ~~p-~--~~t~~~li~~~~~~g~~  174 (176)
                      ..| .  ...+..+...+...|++
T Consensus       209 ~~~~~~~~~~~~~~g~~~~~~~~y  232 (434)
T 4b4t_Q          209 YCPTQTVAELDLMSGILHCEDKDY  232 (434)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSSSCH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhH
Confidence            212 1  34556666666655554

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.64  E-value=0.00018  Score=46.15  Aligned_cols=115  Identities=12%  Similarity=-0.023  Sum_probs=92.1

Q ss_pred             hccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHH
Q 036589           18 LQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFY   97 (176)
Q Consensus        18 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~   97 (176)
                      -.+++++|++.|++. .+.         + .|+..    +-..|...+.+++|.+.|++..+. |   +...+..|-..|
T Consensus         7 ~~~d~~~A~~~~~~a-a~~---------g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g---~~~a~~~Lg~~y   67 (138)
T 1klx_A            7 VKKDLKKAIQYYVKA-CEL---------N-EMFGC----LSLVSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFY   67 (138)
T ss_dssp             HHHHHHHHHHHHHHH-HHT---------T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHH-HcC---------C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-C---CHHHHHHHHHHH
Confidence            456788999999987 332         2 22333    667777778899999999999887 4   567777788888


Q ss_pred             Hh----ccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHh----cCcHHHHHHHHHHHHhcccc
Q 036589           98 GR----ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLT----CGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus        98 ~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~l~~~m~~~~~~  154 (176)
                      ..    .+++++|++.|++..+.|   +...+..|-..|..    .+++++|.+.|++..+.|.+
T Consensus        68 ~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~  129 (138)
T 1klx_A           68 ENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE  129 (138)
T ss_dssp             HHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence            88    889999999999998765   56778888888888    89999999999999888764

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.61  E-value=0.00029  Score=57.08  Aligned_cols=162  Identities=13%  Similarity=0.055  Sum_probs=109.1

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCC------------cHHHHHHHHHHHHhcCChHHHHHHHH
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRY------------NLLHYDLIITKLGRAKMFDEMQQILH   75 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~y~~li~~~~~~g~~~~a~~~~~   75 (176)
                      .|-..+....+.|++++|.++|+.+. ..............|            ....|-..+....+.|..+.|.++|.
T Consensus       380 Lwl~~a~~ee~~~~~e~aR~iyek~l-~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~  458 (679)
T 4e6h_A          380 LAFSLSEQYELNTKIPEIETTILSCI-DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG  458 (679)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHH-HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            45667788888999999999999872 210000000000012            23468888888888999999999999


Q ss_pred             HHhhc-CCCCCchHHHHHHHHHHHhc-cCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q 036589           76 QLKHD-TRVIPEEIIFCNVISFYGRA-RLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI  153 (176)
Q Consensus        76 ~m~~~-~g~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~  153 (176)
                      ...+. ....+......+.+.  .+. ++.+.|..+|+...+. ++-+...|..++......|+.+.|..+|++......
T Consensus       459 ~A~~~~~~~~~~lyi~~A~lE--~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~  535 (679)
T 4e6h_A          459 KCRRLKKLVTPDIYLENAYIE--YHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS  535 (679)
T ss_dssp             HHHHTGGGSCTHHHHHHHHHH--HTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred             HHHHhcCCCChHHHHHHHHHH--HHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence            99875 223333333333333  334 4589999999988754 344666677888888889999999999999887654


Q ss_pred             ccc--chHHHHHHHHHhhccccC
Q 036589          154 AVL--DGLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       154 ~~p--~~~t~~~li~~~~~~g~~  174 (176)
                      . +  ....|...+..-.+.|..
T Consensus       536 ~-~~~~~~lw~~~~~fE~~~G~~  557 (679)
T 4e6h_A          536 D-SHLLKMIFQKVIFFESKVGSL  557 (679)
T ss_dssp             S-TTHHHHHHHHHHHHHHHTCCS
T ss_pred             C-HHHHHHHHHHHHHHHHHcCCH
Confidence            2 2  356777777776666654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.60  E-value=0.00032  Score=43.00  Aligned_cols=64  Identities=11%  Similarity=-0.063  Sum_probs=56.4

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhccc
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS  115 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  115 (176)
                      +...|..+...+...|++++|...|++..+. . ..+...|..+..+|...|++++|...|++..+
T Consensus        18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A           18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDF-D-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-C-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6788999999999999999999999999976 2 23466788899999999999999999998874

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.59  E-value=0.00062  Score=55.18  Aligned_cols=152  Identities=9%  Similarity=-0.038  Sum_probs=104.5

Q ss_pred             CHHHHHHHHHhccChhHHH-HhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-----
Q 036589            8 SPFRLASLLHLQKHPKLAL-QLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT-----   81 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~-----   81 (176)
                      .|-.....+.+.|+.++|. ++|++.. .          ..+.+...|-..+...-+.|++++|.++|+.+....     
T Consensus       345 lW~~ya~~~~~~~~~~~a~r~il~rAi-~----------~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~  413 (679)
T 4e6h_A          345 IWFNMANYQGEKNTDSTVITKYLKLGQ-Q----------CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLA  413 (679)
T ss_dssp             HHHHHHHHHHHHSCCTTHHHHHHHHHH-H----------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHH-H----------hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh
Confidence            4556667777889999997 9999872 2          223466677778888889999999999999988641     


Q ss_pred             ---CCCC------------chHHHHHHHHHHHhccCHHHHHHHHHhcccC-CCCccHhHHHHHHHHHHhc-CcHHHHHHH
Q 036589           82 ---RVIP------------EEIIFCNVISFYGRARLLEHALQVFDEMPSF-NVQRTVKSLNTLLNALLTC-GKLDRMKEL  144 (176)
Q Consensus        82 ---g~~~------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~-g~~~~a~~l  144 (176)
                         ...|            ...+|...++...+.|..+.|..+|....+. + ..+...|-.....-.+. ++.+.|..+
T Consensus       414 ~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~i  492 (679)
T 4e6h_A          414 ALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKV  492 (679)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHH
T ss_pred             hhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHH
Confidence               0013            2346888888888999999999999998764 2 11222333222222333 559999999


Q ss_pred             HHHHHhccccccchHHHHHHHHHhhcccc
Q 036589          145 FISFNLKAIAVLDGLCSNLKIIMNDSQVR  173 (176)
Q Consensus       145 ~~~m~~~~~~~p~~~t~~~li~~~~~~g~  173 (176)
                      |+...+.-.  -+..-|...++...+.|+
T Consensus       493 fe~~Lk~~p--~~~~~w~~y~~fe~~~~~  519 (679)
T 4e6h_A          493 LELGLKYFA--TDGEYINKYLDFLIYVNE  519 (679)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHCC--CchHHHHHHHHHHHhCCC
Confidence            999887633  355566666665555554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.50  E-value=8.8e-05  Score=56.98  Aligned_cols=94  Identities=6%  Similarity=-0.025  Sum_probs=68.1

Q ss_pred             ccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc----CC--CCCchHHHHH
Q 036589           19 QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD----TR--VIPEEIIFCN   92 (176)
Q Consensus        19 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~----~g--~~~~~~~~~~   92 (176)
                      .|++++|+.++++........   ..+..+....+++.+..+|...|++++|+.++++..+-    .|  ..-...+++.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~---lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  387 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSV---FEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK  387 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTT---BCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCc---cChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            467888888877641111000   01233335578999999999999999999999987753    23  3334577899


Q ss_pred             HHHHHHhccCHHHHHHHHHhccc
Q 036589           93 VISFYGRARLLEHALQVFDEMPS  115 (176)
Q Consensus        93 li~~~~~~g~~~~a~~~~~~m~~  115 (176)
                      |-..|...|++++|+.+|++..+
T Consensus       388 La~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          388 LGRLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccCHHHHHHHHHHHHH
Confidence            99999999999999999987653

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.47  E-value=0.00092  Score=40.06  Aligned_cols=87  Identities=9%  Similarity=-0.114  Sum_probs=69.7

Q ss_pred             chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589           86 EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI  165 (176)
Q Consensus        86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li  165 (176)
                      +...+..+..+|.+.|++++|+..|++..+.. +-+...|..+-.+|...|++++|.+.|++..+.....++......+.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~   84 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQ   84 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHH
Confidence            45678889999999999999999999988654 33567889999999999999999999999876543326777777777


Q ss_pred             HHhhcccc
Q 036589          166 IMNDSQVR  173 (176)
Q Consensus       166 ~~~~~~g~  173 (176)
                      ..+.+.+.
T Consensus        85 ~~l~~~~~   92 (100)
T 3ma5_A           85 DAKLKAEG   92 (100)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHccc
Confidence            76665544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.40  E-value=0.0032  Score=49.98  Aligned_cols=151  Identities=10%  Similarity=-0.115  Sum_probs=118.4

Q ss_pred             CHHHHHHHHHhccC----------hhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcC--ChHHHHHHHH
Q 036589            8 SPFRLASLLHLQKH----------PKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAK--MFDEMQQILH   75 (176)
Q Consensus         8 ~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g--~~~~a~~~~~   75 (176)
                      .|+.--..+.+.++          +++++++++.+. ..          .+-+..+|+-=.-.+.+.+  +++++.+.++
T Consensus        65 aW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l-~~----------~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~  133 (567)
T 1dce_A           65 LWNCRREVLQHLETEKSPEESAALVKAELGFLESCL-RV----------NPKSYGTWHHRCWLLSRLPEPNWARELELCA  133 (567)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH-HH----------CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHH-Hh----------CCCCHHHHHHHHHHHHHcccccHHHHHHHHH
Confidence            56665566666666          899999999983 22          1336778887778888889  6799999999


Q ss_pred             HHhhcCCCCCchHHHHHHHHHHHhcc-CHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhc--------------CcHHH
Q 036589           76 QLKHDTRVIPEEIIFCNVISFYGRAR-LLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTC--------------GKLDR  140 (176)
Q Consensus        76 ~m~~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--------------g~~~~  140 (176)
                      ++.+.  -.-+...|+.--.++.+.| .++++++.++++.+.. .-|...|+..-..+.+.              +.+++
T Consensus       134 k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~e  210 (567)
T 1dce_A          134 RFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLK  210 (567)
T ss_dssp             HHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHH
T ss_pred             HHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccccccccHHHHHH
Confidence            99987  2457889998888888899 8999999999999765 44778888777776663              56799


Q ss_pred             HHHHHHHHHhccccccchHHHHHHHHHhhccccC
Q 036589          141 MKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       141 a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~  174 (176)
                      +.+.+.+.....+.  |...|..+-..+.+.++.
T Consensus       211 el~~~~~ai~~~P~--~~saW~y~~~ll~~~~~~  242 (567)
T 1dce_A          211 ELELVQNAFFTDPN--DQSAWFYHRWLLGRAEPH  242 (567)
T ss_dssp             HHHHHHHHHHHCSS--CSHHHHHHHHHHSCCCCC
T ss_pred             HHHHHHHHHhhCCC--CccHHHHHHHHHhcCCCc
Confidence            99999998887765  788888888777776663

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=97.40  E-value=0.0022  Score=46.92  Aligned_cols=152  Identities=9%  Similarity=-0.049  Sum_probs=113.6

Q ss_pred             CCCHHHHHHHHHhcc--ChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHH----Hhc---CChHHHHHHHHH
Q 036589            6 PTSPFRLASLLHLQK--HPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKL----GRA---KMFDEMQQILHQ   76 (176)
Q Consensus         6 ~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~----~~~---g~~~~a~~~~~~   76 (176)
                      ...|+.--..+...+  ++++++++++.+....         +  -+..+|+.=-..+    ...   ++++++.++++.
T Consensus        67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n---------P--k~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~  135 (306)
T 3dra_A           67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDN---------E--KNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEA  135 (306)
T ss_dssp             HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC---------T--TCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC---------c--ccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence            345677777777788  9999999999873221         1  1333444333333    444   789999999999


Q ss_pred             HhhcCCCCCchHHHHHHHHHHHhccCHH--HHHHHHHhcccCCCCccHhHHHHHHHHHHhcCc------HHHHHHHHHHH
Q 036589           77 LKHDTRVIPEEIIFCNVISFYGRARLLE--HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGK------LDRMKELFISF  148 (176)
Q Consensus        77 m~~~~g~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~------~~~a~~l~~~m  148 (176)
                      +.+.  -.-+-..|+.--.++.+.|.++  ++++.++++.+.. ..|-..|+.--..+.+.+.      ++++++.++++
T Consensus       136 ~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~a  212 (306)
T 3dra_A          136 MLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDK  212 (306)
T ss_dssp             HHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHH
T ss_pred             HHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHH
Confidence            9976  3557888888888888889888  9999999998655 4477788877666667666      88999999999


Q ss_pred             HhccccccchHHHHHHHHHhhcccc
Q 036589          149 NLKAIAVLDGLCSNLKIIMNDSQVR  173 (176)
Q Consensus       149 ~~~~~~~p~~~t~~~li~~~~~~g~  173 (176)
                      .+..+.  |...|+.+-..+.+.|+
T Consensus       213 I~~~p~--n~SaW~y~~~ll~~~~~  235 (306)
T 3dra_A          213 IVKCPQ--NPSTWNYLLGIHERFDR  235 (306)
T ss_dssp             HHHCSS--CHHHHHHHHHHHHHTTC
T ss_pred             HHhCCC--CccHHHHHHHHHHhcCC
Confidence            888776  88888887777777665

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.38  E-value=0.0038  Score=47.93  Aligned_cols=125  Identities=12%  Similarity=0.096  Sum_probs=65.4

Q ss_pred             CCCCHHHHHHHHHhcc---ChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhc----CChHHHHHHHHHH
Q 036589            5 KPTSPFRLASLLHLQK---HPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRA----KMFDEMQQILHQL   77 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~----g~~~~a~~~~~~m   77 (176)
                      ++..+..|-..|...|   +.++|++.|+.. .+.+          .++...+..+...|...    +++++|.+.|++.
T Consensus       175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a-a~~g----------~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~a  243 (452)
T 3e4b_A          175 TDICYVELATVYQKKQQPEQQAELLKQMEAG-VSRG----------TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKI  243 (452)
T ss_dssp             CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HHTT----------CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCcccHHHHHHHHHHH-HHCC----------CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHH
Confidence            3446666667777777   777777777776 2221          23444444455555443    5666666666665


Q ss_pred             hhcCCCCCchHHHHHHHHH-H--HhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcC-----cHHHHHHHHHHHH
Q 036589           78 KHDTRVIPEEIIFCNVISF-Y--GRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCG-----KLDRMKELFISFN  149 (176)
Q Consensus        78 ~~~~g~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-----~~~~a~~l~~~m~  149 (176)
                      . . |   +...+..|-.. |  ...+++++|+..|++..+.|   +...+..|-..|. .|     ++++|.+.|++..
T Consensus       244 a-~-g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa  314 (452)
T 3e4b_A          244 A-P-G---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV  314 (452)
T ss_dssp             G-G-G---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT
T ss_pred             c-C-C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh
Confidence            5 3 2   22233333333 2  23555666666666555443   3444444444444 22     5555555555544

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.34  E-value=0.0098  Score=45.64  Aligned_cols=122  Identities=11%  Similarity=-0.044  Sum_probs=88.5

Q ss_pred             HHHHHHHHhc----cChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHH-H--HhcCChHHHHHHHHHHhhcCC
Q 036589           10 FRLASLLHLQ----KHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITK-L--GRAKMFDEMQQILHQLKHDTR   82 (176)
Q Consensus        10 ~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~-~--~~~g~~~~a~~~~~~m~~~~g   82 (176)
                      ..|-..|...    +++++|++.|+...  .+            ++..+..+... +  ...+++++|.+.|++..+. |
T Consensus       217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--~g------------~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g  281 (452)
T 3e4b_A          217 DSVARVLGDATLGTPDEKTAQALLEKIA--PG------------YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D  281 (452)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHG--GG------------STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHhCCCCCCCCHHHHHHHHHHHc--CC------------CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C
Confidence            4455555443    68899999999882  21            56666667666 4  4688999999999998877 5


Q ss_pred             CCCchHHHHHHHHHHHhcc-----CHHHHHHHHHhcccCCCCccHhHHHHHHHHHHh----cCcHHHHHHHHHHHHhccc
Q 036589           83 VIPEEIIFCNVISFYGRAR-----LLEHALQVFDEMPSFNVQRTVKSLNTLLNALLT----CGKLDRMKELFISFNLKAI  153 (176)
Q Consensus        83 ~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~l~~~m~~~~~  153 (176)
                         +...+..|-..|. .|     ++++|+..|++.. .   -+...+..|-..|..    ..++++|.+.|+...+.|.
T Consensus       282 ---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  353 (452)
T 3e4b_A          282 ---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ  353 (452)
T ss_dssp             ---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred             ---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence               5666666777776 55     8999999999887 3   356666777666665    3488999999988877655


Q ss_pred             c
Q 036589          154 A  154 (176)
Q Consensus       154 ~  154 (176)
                      +
T Consensus       354 ~  354 (452)
T 3e4b_A          354 N  354 (452)
T ss_dssp             T
T ss_pred             H
Confidence            3

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.33  E-value=0.0012  Score=43.48  Aligned_cols=84  Identities=12%  Similarity=-0.107  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCcc-------------HhHHHHHHHHHHhcCcHHHHHHHHHHHHhc---
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRT-------------VKSLNTLLNALLTCGKLDRMKELFISFNLK---  151 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-------------~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~---  151 (176)
                      ..+...-..+.+.|++++|+..|++..+..  |+             ...|+.+-.++.+.|++++|+..+++.++.   
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~--p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEIS--HTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            445667778889999999999999887543  33             238999999999999999999999998876   


Q ss_pred             ----cccccchHHH----HHHHHHhhccccCC
Q 036589          152 ----AIAVLDGLCS----NLKIIMNDSQVRVT  175 (176)
Q Consensus       152 ----~~~~p~~~t~----~~li~~~~~~g~~~  175 (176)
                          ...  +...|    ...-.++...|+++
T Consensus        90 ~~e~~pd--~~~A~~~~~~~rG~aL~~lgr~e  119 (159)
T 2hr2_A           90 RGELNQD--EGKLWISAVYSRALALDGLGRGA  119 (159)
T ss_dssp             HCCTTST--HHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             cccCCCc--hHHHHHHHHHhHHHHHHHCCCHH
Confidence                443  56777    78888888888765

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.28  E-value=0.0033  Score=37.02  Aligned_cols=58  Identities=12%  Similarity=0.092  Sum_probs=39.5

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCCCchH-HHHHHHHHHHhccCHHHHHHHHHhcccC
Q 036589           57 IITKLGRAKMFDEMQQILHQLKHDTRVIPEEI-IFCNVISFYGRARLLEHALQVFDEMPSF  116 (176)
Q Consensus        57 li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~  116 (176)
                      ....+.+.|++++|.+.|++..+. . .-+.. .+..+-.+|.+.|++++|++.|++..+.
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~-~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQT-E-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH-C-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH-C-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            345566777788888877777765 1 22334 6666777777778888888777777654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=97.24  E-value=0.0049  Score=45.08  Aligned_cols=149  Identities=9%  Similarity=-0.052  Sum_probs=108.0

Q ss_pred             CCCCHHHHHHHHHhccChh--HHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCC------hHHHHHHHHH
Q 036589            5 KPTSPFRLASLLHLQKHPK--LALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKM------FDEMQQILHQ   76 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~------~~~a~~~~~~   76 (176)
                      +...|+.---.+.+.|+++  +++++++.+. +.          .+-+-..|+--...+.+.++      ++++.+.+++
T Consensus       143 ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i-~~----------d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~  211 (306)
T 3dra_A          143 NHHVWSYRKWLVDTFDLHNDAKELSFVDKVI-DT----------DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKD  211 (306)
T ss_dssp             CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHH-HH----------CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcccChHHHHHHHHHHH-Hh----------CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHH
Confidence            3445666666677778887  8899888873 21          12367777766666666666      8888888888


Q ss_pred             HhhcCCCCCchHHHHHHHHHHHhccCHH-HHHHHHHhcccCC--CCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q 036589           77 LKHDTRVIPEEIIFCNVISFYGRARLLE-HALQVFDEMPSFN--VQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI  153 (176)
Q Consensus        77 m~~~~g~~~~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~  153 (176)
                      ....  -.-|...|+.+-..+.+.|+.. .+..+.+++.+.+  -..++..+..+...|.+.|+.++|.++++.+.+.--
T Consensus       212 aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~D  289 (306)
T 3dra_A          212 KIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYN  289 (306)
T ss_dssp             HHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccC
Confidence            8876  3568889998888888888844 4556777776543  234778899999999999999999999999986322


Q ss_pred             cccchHHHHHHHHH
Q 036589          154 AVLDGLCSNLKIIM  167 (176)
Q Consensus       154 ~~p~~~t~~~li~~  167 (176)
                      + ....-|+.....
T Consensus       290 p-ir~~yW~~~~~~  302 (306)
T 3dra_A          290 P-IRSNFWDYQISK  302 (306)
T ss_dssp             G-GGHHHHHHHHHT
T ss_pred             h-HHHHHHHHHHhh
Confidence            2 366666655543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.19  E-value=0.0021  Score=42.34  Aligned_cols=103  Identities=12%  Similarity=0.080  Sum_probs=77.6

Q ss_pred             HhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCH----------HHHHHHHHhcccCCCCccHhHHHHHHHH
Q 036589           62 GRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLL----------EHALQVFDEMPSFNVQRTVKSLNTLLNA  131 (176)
Q Consensus        62 ~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~----------~~a~~~~~~m~~~~~~p~~~~~~~ll~~  131 (176)
                      .+.+.+++|.+.++...+..  .-+...|+.+-.++...+++          ++|+..|++..+.. +-+...|+.+-.+
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~a   89 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA   89 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence            46677899999999988772  33666777777788777664          59999999988654 2356788899999


Q ss_pred             HHhcC-----------cHHHHHHHHHHHHhccccccchHHHHHHHHHhhc
Q 036589          132 LLTCG-----------KLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDS  170 (176)
Q Consensus       132 ~~~~g-----------~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~  170 (176)
                      |...|           ++++|++.|++..+.  . |+...|..-+....+
T Consensus        90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~-P~~~~y~~al~~~~k  136 (158)
T 1zu2_A           90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE--Q-PDNTHYLKSLEMTAK  136 (158)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--C-TTCHHHHHHHHHHHT
T ss_pred             HHHhcccCcchhhhhccHHHHHHHHHHHHHh--C-CCCHHHHHHHHHHHh
Confidence            98764           899999999998775  3 666677666655443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.12  E-value=0.0016  Score=38.52  Aligned_cols=61  Identities=16%  Similarity=0.037  Sum_probs=51.2

Q ss_pred             HHHHHHhccCHHHHHHHHHhcccCCCCccHh-HHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589           93 VISFYGRARLLEHALQVFDEMPSFNVQRTVK-SLNTLLNALLTCGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus        93 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~  154 (176)
                      ....+.+.|++++|+..|++..+.. +.+.. .+..+-.+|...|++++|.+.|++..+....
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~   67 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD   67 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            4567788999999999999988653 23556 8888899999999999999999999887655

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=97.10  E-value=0.0085  Score=44.64  Aligned_cols=149  Identities=11%  Similarity=-0.105  Sum_probs=83.1

Q ss_pred             CHHHHHHHHHhcc-ChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhc-C-ChHHHHHHHHHHhhcCCCC
Q 036589            8 SPFRLASLLHLQK-HPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRA-K-MFDEMQQILHQLKHDTRVI   84 (176)
Q Consensus         8 ~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~-g-~~~~a~~~~~~m~~~~g~~   84 (176)
                      .|+.--..+...+ ++++++++++.+...           .+-+..+|+.-...+.+. + +++++.++++.+.+.  -.
T Consensus        90 aWn~R~~iL~~l~~~l~eEL~~~~~~L~~-----------nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--dp  156 (349)
T 3q7a_A           90 VWQYRFSLLTSLNKSLEDELRLMNEFAVQ-----------NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--DP  156 (349)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHT-----------TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--CT
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHh-----------CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--CC
Confidence            3444444555555 366666666665211           122455555555555544 4 566666666666654  23


Q ss_pred             CchHHHHHHHHHHHhccCHH--------HHHHHHHhcccCCCCccHhHHHHHHHHHHhcCc-------HHHHHHHHHHHH
Q 036589           85 PEEIIFCNVISFYGRARLLE--------HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGK-------LDRMKELFISFN  149 (176)
Q Consensus        85 ~~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-------~~~a~~l~~~m~  149 (176)
                      -|-..|+.--.++.+.|.++        ++++.++++.+.. ..|...|+.--..+.+.+.       ++++++.+++..
T Consensus       157 kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI  235 (349)
T 3q7a_A          157 KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSI  235 (349)
T ss_dssp             TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHH
Confidence            35556655544444444444        6666666666543 3366666666666655554       566777777766


Q ss_pred             hccccccchHHHHHHHHHhhccc
Q 036589          150 LKAIAVLDGLCSNLKIIMNDSQV  172 (176)
Q Consensus       150 ~~~~~~p~~~t~~~li~~~~~~g  172 (176)
                      ...+.  |...|+.+-..+.+.|
T Consensus       236 ~~~P~--n~SaW~Ylr~Ll~~~~  256 (349)
T 3q7a_A          236 HLIPH--NVSAWNYLRGFLKHFS  256 (349)
T ss_dssp             HHCTT--CHHHHHHHHHHHHHTT
T ss_pred             HhCCC--CHHHHHHHHHHHHhcC
Confidence            66554  5666655555554444

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.07  E-value=0.0088  Score=48.74  Aligned_cols=102  Identities=13%  Similarity=0.095  Sum_probs=55.6

Q ss_pred             HHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHH
Q 036589           15 LLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVI   94 (176)
Q Consensus        15 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li   94 (176)
                      .....|++++|+++.+.+.                +...|..+...+.+.++++.|++.|..+..-          ..+.
T Consensus       661 ~~l~~~~~~~A~~~~~~~~----------------~~~~W~~la~~al~~~~~~~A~~~y~~~~d~----------~~l~  714 (814)
T 3mkq_A          661 LALKVGQLTLARDLLTDES----------------AEMKWRALGDASLQRFNFKLAIEAFTNAHDL----------ESLF  714 (814)
T ss_dssp             HHHHHTCHHHHHHHHTTCC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTCH----------HHHH
T ss_pred             hhhhcCCHHHHHHHHHhhC----------------cHhHHHHHHHHHHHcCCHHHHHHHHHHccCh----------hhhH
Confidence            3345566666666655551                4667777777778888888888777776543          2333


Q ss_pred             HHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 036589           95 SFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF  148 (176)
Q Consensus        95 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m  148 (176)
                      ..|...|+.+...++-+.....|      -++.-..+|.+.|++++|.+++.++
T Consensus       715 ~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          715 LLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence            33444444444333333333222      1233334455556666666655554

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.90  E-value=0.025  Score=37.81  Aligned_cols=55  Identities=13%  Similarity=-0.027  Sum_probs=46.5

Q ss_pred             HHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036589           10 FRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD   80 (176)
Q Consensus        10 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~   80 (176)
                      ..-++.-...|+++.|.++-+.+.                +...|..|.......|+++-|++.|+....-
T Consensus         9 ~~rF~LAL~lg~l~~A~e~a~~l~----------------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~   63 (177)
T 3mkq_B            9 HIRFDLALEYGNLDAALDEAKKLN----------------DSITWERLIQEALAQGNASLAEMIYQTQHSF   63 (177)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHhC----------------CHHHHHHHHHHHHHcCChHHHHHHHHHhCCH
Confidence            344667788999999999988772                6889999999999999999999999988754

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=96.85  E-value=0.045  Score=42.64  Aligned_cols=125  Identities=13%  Similarity=0.075  Sum_probs=90.3

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      .|...++.+.+.++++.|..+|+.. ..         ++..+.+....+.+.... .++.+.|..+|+...+..+-.|  
T Consensus       288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~---------~~~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~~~--  354 (493)
T 2uy1_A          288 LRINHLNYVLKKRGLELFRKLFIEL-GN---------EGVGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHPDST--  354 (493)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHH-TT---------SCCCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTTCH--
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-hC---------CCCChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCCCCH--
Confidence            3555666777788999999999988 33         222233333333343333 3369999999999988733223  


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL  150 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~  150 (176)
                      ..+...++...+.|+.+.|..+|+...+     ....|...+..=...|+.+.+.+++++..+
T Consensus       355 ~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          355 LLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3456677778889999999999999852     567788888877888999999999888764

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.80  E-value=0.029  Score=36.57  Aligned_cols=86  Identities=5%  Similarity=-0.026  Sum_probs=63.4

Q ss_pred             ChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcc---CHHHHHHHHHhcccCCCCc--cHhHHHHHHHHHHhcCcHHH
Q 036589           66 MFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRAR---LLEHALQVFDEMPSFNVQR--TVKSLNTLLNALLTCGKLDR  140 (176)
Q Consensus        66 ~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~g~~~~  140 (176)
                      ....+++-|.+.... +. ++..+.-.+-.++++..   +.++++.+|++..+.. .|  ....+-.|--++.+.|++++
T Consensus        13 ~l~~~~~~y~~e~~~-~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~   89 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK   89 (152)
T ss_dssp             HHHHHHHHHHHHHHT-TC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHHHHcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHH
Confidence            355667777777665 44 55666666888888888   6779999999888654 24  35556666677799999999


Q ss_pred             HHHHHHHHHhcccc
Q 036589          141 MKELFISFNLKAIA  154 (176)
Q Consensus       141 a~~l~~~m~~~~~~  154 (176)
                      |.+.++.+.+..+.
T Consensus        90 A~~y~~~lL~ieP~  103 (152)
T 1pc2_A           90 ALKYVRGLLQTEPQ  103 (152)
T ss_dssp             HHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHhcCCC
Confidence            99999999876543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.67  E-value=0.017  Score=43.23  Aligned_cols=142  Identities=6%  Similarity=-0.142  Sum_probs=90.2

Q ss_pred             CCCCHHHHHHHHHh-----ccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHh---cC--ChHHHH---
Q 036589            5 KPTSPFRLASLLHL-----QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGR---AK--MFDEMQ---   71 (176)
Q Consensus         5 ~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~---~g--~~~~a~---   71 (176)
                      ++..|...+++...     ..+..+|..+|++. .+..       ++   ....|..+..+|.-   .+  .-....   
T Consensus       193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~A-l~lD-------P~---~a~A~A~la~a~~~~~~~~~~~~~~~~~l~  261 (372)
T 3ly7_A          193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEI-VQSS-------PE---FTYARAEKALVDIVRHSQHPLDEKQLAALN  261 (372)
T ss_dssp             SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHH-HHHC-------TT---CHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhC-------CC---CHHHHHHHHHHHHHHhccCCCchhhHHHHH
Confidence            44566666655443     23457899999997 3221       22   34455544444431   11  111111   


Q ss_pred             HHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589           72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLK  151 (176)
Q Consensus        72 ~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~  151 (176)
                      +-++.......-..+..+|..+...+...|++++|+..+++..+.+  |+...|..+-..+.-.|++++|.+.|.+....
T Consensus       262 ~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          262 TEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL  339 (372)
T ss_dssp             HHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            1222222211335677788877777777899999999999999876  78777877778889999999999999987765


Q ss_pred             cccccchHHHH
Q 036589          152 AIAVLDGLCSN  162 (176)
Q Consensus       152 ~~~~p~~~t~~  162 (176)
                      .   |...||.
T Consensus       340 ~---P~~~t~~  347 (372)
T 3ly7_A          340 R---PGANTLY  347 (372)
T ss_dssp             S---CSHHHHH
T ss_pred             C---CCcChHH
Confidence            4   4444553

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.59  E-value=0.003  Score=41.54  Aligned_cols=100  Identities=12%  Similarity=-0.069  Sum_probs=74.2

Q ss_pred             HHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCCh----------HHHHHHHHHHhhcCCCCC
Q 036589           16 LHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMF----------DEMQQILHQLKHDTRVIP   85 (176)
Q Consensus        16 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~----------~~a~~~~~~m~~~~g~~~   85 (176)
                      ..+.+.+++|.+.++.....           -+-+...|..+..++...+++          ++|...|++..+.   .|
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l-----------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l---dP   77 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKS-----------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI---DP   77 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---CT
T ss_pred             HHHHhHHHHHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh---Cc
Confidence            45677888999998886222           123788888888888887765          5999999999876   33


Q ss_pred             -chHHHHHHHHHHHhcc-----------CHHHHHHHHHhcccCCCCccHhHHHHHHHH
Q 036589           86 -EEIIFCNVISFYGRAR-----------LLEHALQVFDEMPSFNVQRTVKSLNTLLNA  131 (176)
Q Consensus        86 -~~~~~~~li~~~~~~g-----------~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~  131 (176)
                       +...|..+-.+|...|           ++++|++.|++..+.  .|+...|..-+..
T Consensus        78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~  133 (158)
T 1zu2_A           78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM  133 (158)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence             4567888999998774           899999999998865  3776555444443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=96.57  E-value=0.12  Score=38.47  Aligned_cols=141  Identities=6%  Similarity=-0.029  Sum_probs=103.5

Q ss_pred             HhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCCCCchHHHHHHHH
Q 036589           17 HLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAK-MFDEMQQILHQLKHDTRVIPEEIIFCNVIS   95 (176)
Q Consensus        17 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~~g~~~~~~~~~~li~   95 (176)
                      .+....++|+++++.+...           .+-+..+|+.--..+...| .++++.++++.+...  ..-+..+|+.--.
T Consensus        65 ~~~e~se~AL~lt~~~L~~-----------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--nPKny~aW~hR~w  131 (349)
T 3q7a_A           65 AKEEKSERALELTEIIVRM-----------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--NLKSYQVWHHRLL  131 (349)
T ss_dssp             HTTCCSHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCCCHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHh-----------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence            3344556899999997222           1225667777777777788 599999999999976  3456677887777


Q ss_pred             HHHhc-c-CHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHH--------HHHHHHHHHHhccccccchHHHHHHH
Q 036589           96 FYGRA-R-LLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD--------RMKELFISFNLKAIAVLDGLCSNLKI  165 (176)
Q Consensus        96 ~~~~~-g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~--------~a~~l~~~m~~~~~~~p~~~t~~~li  165 (176)
                      .+.+. + ++++++++++.+.+.. +-|...|+----.+.+.|.++        ++++.++++.+..+.  |...|+..-
T Consensus       132 lL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~--N~SAW~~R~  208 (349)
T 3q7a_A          132 LLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR--NNSAWGWRW  208 (349)
T ss_dssp             HHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred             HHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC--CHHHHHHHH
Confidence            77776 7 8899999999999654 447777876555555555555        899999999998776  777887777


Q ss_pred             HHhhcccc
Q 036589          166 IMNDSQVR  173 (176)
Q Consensus       166 ~~~~~~g~  173 (176)
                      ..+.+.++
T Consensus       209 ~lL~~l~~  216 (349)
T 3q7a_A          209 YLRVSRPG  216 (349)
T ss_dssp             HHHTTSTT
T ss_pred             HHHHhccc
Confidence            66666554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.55  E-value=0.039  Score=33.17  Aligned_cols=66  Identities=8%  Similarity=-0.086  Sum_probs=41.4

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-----CCCCchHHHHHHHHHHHhccCHHHHHHHHHhccc
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDT-----RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS  115 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~-----g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  115 (176)
                      +...+-.|...+.+.|+++.|...|+...+..     +-.+....+..+..+|.+.|+++.|...+++..+
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            44455566677777777777777777665531     1123445566667777777777777777776654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=96.36  E-value=0.072  Score=39.36  Aligned_cols=132  Identities=11%  Similarity=-0.093  Sum_probs=99.7

Q ss_pred             hhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCC--hHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHh
Q 036589           22 PKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKM--FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR   99 (176)
Q Consensus        22 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~--~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~   99 (176)
                      +++++.+++.+...           .+-+..+|+-=...+.+.++  ++++..+++.+.+.  -.-|-..|+.--.++..
T Consensus        90 l~~EL~~~~~~L~~-----------~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~  156 (331)
T 3dss_A           90 VKAELGFLESCLRV-----------NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQ  156 (331)
T ss_dssp             HHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence            67888988887222           23367777777777777774  89999999999987  35688889888888888


Q ss_pred             ccC-HHHHHHHHHhcccCCCCccHhHHHHHHHHHHhc--------------CcHHHHHHHHHHHHhccccccchHHHHHH
Q 036589          100 ARL-LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTC--------------GKLDRMKELFISFNLKAIAVLDGLCSNLK  164 (176)
Q Consensus       100 ~g~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--------------g~~~~a~~l~~~m~~~~~~~p~~~t~~~l  164 (176)
                      .|. ++++++.++++.+.. +-|...|+..-..+.+.              +.++++++.+.......+.  |...|+-+
T Consensus       157 l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~--d~SaW~Y~  233 (331)
T 3dss_A          157 AAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN--DQSAWFYH  233 (331)
T ss_dssp             TTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT--CHHHHHHH
T ss_pred             hCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC--CHHHHHHH
Confidence            888 699999999998655 45777888766666554              4588999999999887776  77777654


Q ss_pred             HHHhh
Q 036589          165 IIMND  169 (176)
Q Consensus       165 i~~~~  169 (176)
                      -..+.
T Consensus       234 r~ll~  238 (331)
T 3dss_A          234 RWLLG  238 (331)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44333

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.20  E-value=0.14  Score=40.58  Aligned_cols=138  Identities=6%  Similarity=-0.103  Sum_probs=104.9

Q ss_pred             HhccCh-hHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCC----------hHHHHHHHHHHhhcCCCCC
Q 036589           17 HLQKHP-KLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKM----------FDEMQQILHQLKHDTRVIP   85 (176)
Q Consensus        17 ~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~----------~~~a~~~~~~m~~~~g~~~   85 (176)
                      .+.|.+ ++|++.++.+...           .+-+..+|+.=-.++...|+          ++++.+.++.+.+.  -.-
T Consensus        39 ~~~~~~~eeal~~~~~~l~~-----------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK  105 (567)
T 1dce_A           39 RQAGELDESVLELTSQILGA-----------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPK  105 (567)
T ss_dssp             HHTTCCSHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTT
T ss_pred             HHcCCCCHHHHHHHHHHHHH-----------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCC
Confidence            344544 4678888887221           12245667666666666666          89999999999987  244


Q ss_pred             chHHHHHHHHHHHhcc--CHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcC-cHHHHHHHHHHHHhccccccchHHHH
Q 036589           86 EEIIFCNVISFYGRAR--LLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCG-KLDRMKELFISFNLKAIAVLDGLCSN  162 (176)
Q Consensus        86 ~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~l~~~m~~~~~~~p~~~t~~  162 (176)
                      +...|+.--.++.+.|  +++++++.++++.+.. ..|..+|+.---.+.+.| .++++.+.++++.+..+.  +...|+
T Consensus       106 ~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~--n~saW~  182 (567)
T 1dce_A          106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS--NYSSWH  182 (567)
T ss_dssp             CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC--CHHHHH
T ss_pred             CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC--CccHHH
Confidence            6778888888888999  7899999999999765 458888988888888888 899999999999988776  777777


Q ss_pred             HHHHHhhc
Q 036589          163 LKIIMNDS  170 (176)
Q Consensus       163 ~li~~~~~  170 (176)
                      ..-..+.+
T Consensus       183 ~r~~ll~~  190 (567)
T 1dce_A          183 YRSCLLPQ  190 (567)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            66666554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.19  E-value=0.082  Score=31.20  Aligned_cols=66  Identities=12%  Similarity=-0.049  Sum_probs=39.6

Q ss_pred             CcHHHHHHHHHHHHhcCC---hHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccC
Q 036589           49 YNLLHYDLIITKLGRAKM---FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF  116 (176)
Q Consensus        49 ~~~~~y~~li~~~~~~g~---~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  116 (176)
                      .++..+..+..++...++   .++|..++++..+..  .-+......+-..+.+.|++++|+..|+.+.+.
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            455566666666654433   567777777766551  223344455566666777777777777776644

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.09  E-value=0.048  Score=32.72  Aligned_cols=69  Identities=13%  Similarity=-0.055  Sum_probs=55.3

Q ss_pred             chHHHHHHHHHHHhccCHHHHHHHHHhcccC------CCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589           86 EEIIFCNVISFYGRARLLEHALQVFDEMPSF------NVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus        86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~  154 (176)
                      +..-...|-..+.+.|++..|...|+...+.      .-.+....+..|..++.+.|++++|..++++..+..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~   78 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE   78 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence            3444556888999999999999999886642      12346778899999999999999999999999876544

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.04  E-value=0.15  Score=32.78  Aligned_cols=134  Identities=13%  Similarity=0.038  Sum_probs=97.1

Q ss_pred             CCHHHHHHHH--HhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589            7 TSPFRLASLL--HLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI   84 (176)
Q Consensus         7 ~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~   84 (176)
                      .+...||++-  .-.|.+++..+++.+..+..             +..-||.+|--....-+-+-..++++.+-+...+.
T Consensus         6 el~kkLmeAK~~ildG~v~qGveii~k~~~ss-------------ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis   72 (172)
T 1wy6_A            6 EIIRKLMDAKKFLLDGYIDEGVKIVLEITKSS-------------TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD   72 (172)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------------CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHcCCC-------------CccccceeeeecchhhchhHHHHHHHHHhhhcCcH
Confidence            3445566654  34688999999998873222             56778888877777777777777777766553322


Q ss_pred             C----------------chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 036589           85 P----------------EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF  148 (176)
Q Consensus        85 ~----------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m  148 (176)
                      +                +...+..-+..+...|.-++-..++..+.. +.+|++...-.+-.+|.+.|+..+|.+++.+.
T Consensus        73 ~C~NlKrVi~C~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A  151 (172)
T 1wy6_A           73 KCQNLKSVVECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA  151 (172)
T ss_dssp             GCSCTHHHHHHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhcHHHHHHHHHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            2                223344456777777888888888888543 34688888889999999999999999999999


Q ss_pred             Hhcccc
Q 036589          149 NLKAIA  154 (176)
Q Consensus       149 ~~~~~~  154 (176)
                      -+.|++
T Consensus       152 C~kG~k  157 (172)
T 1wy6_A          152 CKKGEK  157 (172)
T ss_dssp             HHTTCH
T ss_pred             HHhhhH
Confidence            999886

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=95.82  E-value=0.064  Score=33.96  Aligned_cols=90  Identities=9%  Similarity=-0.058  Sum_probs=73.6

Q ss_pred             HHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCCCCch
Q 036589           12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGR----AKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus        12 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      |-..|...+.+++|++.|+.. .+.+            ++..+..|-..|..    .+++++|.+.|++..+. |   +.
T Consensus        31 lg~~y~~g~~~~~A~~~~~~A-a~~g------------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g---~~   93 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKA-CELN------------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-N---DQ   93 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHH-HHTT------------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CH
T ss_pred             HHHHHHcCCCHHHHHHHHHHH-HcCC------------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-C---CH
Confidence            555566667788899999997 3422            78888889999988    89999999999999887 4   46


Q ss_pred             HHHHHHHHHHHh----ccCHHHHHHHHHhcccCCC
Q 036589           88 IIFCNVISFYGR----ARLLEHALQVFDEMPSFNV  118 (176)
Q Consensus        88 ~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~  118 (176)
                      ..+..|-..|..    .+++++|...|++..+.|.
T Consensus        94 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           94 DGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            667778888888    8999999999999887763

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.77  E-value=0.18  Score=31.68  Aligned_cols=106  Identities=7%  Similarity=-0.018  Sum_probs=71.7

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHH---HHHHHHhcccCCCCc--cHhHHHHHHHH
Q 036589           57 IITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEH---ALQVFDEMPSFNVQR--TVKSLNTLLNA  131 (176)
Q Consensus        57 li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~p--~~~~~~~ll~~  131 (176)
                      ++..-.....+..+++-|+..... |. ++..+--.+..++.+.....+   ++.+++++...+ .|  .....-.|--+
T Consensus         7 ~l~~~~~~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg   83 (126)
T 1nzn_A            7 VLNELVSVEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVG   83 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHH
T ss_pred             HHhccCCHHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHH
Confidence            334444455566777777777665 44 444444458888888887665   999999988654 23  44455566688


Q ss_pred             HHhcCcHHHHHHHHHHHHhccccccchHHHHHHH
Q 036589          132 LLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKI  165 (176)
Q Consensus       132 ~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li  165 (176)
                      +.+.|++++|.+.++.+.+..+..+...+-..+|
T Consensus        84 ~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i  117 (126)
T 1nzn_A           84 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  117 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            8999999999999999988655422344433333

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.75  E-value=0.22  Score=36.14  Aligned_cols=113  Identities=12%  Similarity=-0.018  Sum_probs=80.7

Q ss_pred             CcHHHHHHHHHHH-Hhc--CC------hHHHHHHHHHHhhcCCCCCc---hHHHHHHHHHHHhc-----cCHHHHHHHHH
Q 036589           49 YNLLHYDLIITKL-GRA--KM------FDEMQQILHQLKHDTRVIPE---EIIFCNVISFYGRA-----RLLEHALQVFD  111 (176)
Q Consensus        49 ~~~~~y~~li~~~-~~~--g~------~~~a~~~~~~m~~~~g~~~~---~~~~~~li~~~~~~-----g~~~~a~~~~~  111 (176)
                      +....|..++.+- ...  |.      ...|...+++..+-   .|+   -..|..+...|.+.     |+.++|.++|+
T Consensus       152 ve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe  228 (301)
T 3u64_A          152 VGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE  228 (301)
T ss_dssp             HHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence            3555666666533 332  32      45666677777655   454   67888899999994     99999999999


Q ss_pred             hcccCCCCccHhHHHHHHHHHHhc-CcHHHHHHHHHHHHhccccc-cchHHHHHH
Q 036589          112 EMPSFNVQRTVKSLNTLLNALLTC-GKLDRMKELFISFNLKAIAV-LDGLCSNLK  164 (176)
Q Consensus       112 ~m~~~~~~p~~~~~~~ll~~~~~~-g~~~~a~~l~~~m~~~~~~~-p~~~t~~~l  164 (176)
                      +..+.+-.-+..++..+...++.. |+.+++.+.+++.....+.. |+....|.+
T Consensus       229 rAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~  283 (301)
T 3u64_A          229 HLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL  283 (301)
T ss_dssp             HHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred             HHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence            998765212478888888999885 99999999999998865542 555555544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.39  E-value=0.2  Score=40.79  Aligned_cols=101  Identities=15%  Similarity=0.081  Sum_probs=56.1

Q ss_pred             HHHHHhccChhHHHH-hhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHH
Q 036589           13 ASLLHLQKHPKLALQ-LFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFC   91 (176)
Q Consensus        13 ~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~   91 (176)
                      .......+++++|.+ ++..+ +               +......++..+.+.|..++|.++.++-..            
T Consensus       606 ~~~~~~~~~~~~a~~~~l~~i-~---------------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~------------  657 (814)
T 3mkq_A          606 FQTLTLRGEIEEAIENVLPNV-E---------------GKDSLTKIARFLEGQEYYEEALNISPDQDQ------------  657 (814)
T ss_dssp             HHHHHHTTCHHHHHHHTGGGC-C---------------CHHHHHHHHHHHHHTTCHHHHHHHCCCHHH------------
T ss_pred             HhHHHHhCCHHHHHHHHHhcC-C---------------chHHHHHHHHHHHhCCChHHheecCCCcch------------
Confidence            344455788888888 76655 2               022236677777777777777654421111            


Q ss_pred             HHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 036589           92 NVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISF  148 (176)
Q Consensus        92 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m  148 (176)
                       -.......|++++|.++.+.+.      +...|..+-..+.+.|+++.|++.|..+
T Consensus       658 -~f~~~l~~~~~~~A~~~~~~~~------~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          658 -KFELALKVGQLTLARDLLTDES------AEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             -HHHHHHHHTCHHHHHHHHTTCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -heehhhhcCCHHHHHHHHHhhC------cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence             0122334556666655554443      3455555556666666666665555554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.36  E-value=0.2  Score=29.46  Aligned_cols=68  Identities=3%  Similarity=-0.031  Sum_probs=52.2

Q ss_pred             CchHHHHHHHHHHHhccC---HHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q 036589           85 PEEIIFCNVISFYGRARL---LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI  153 (176)
Q Consensus        85 ~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~  153 (176)
                      .+...+..+..++...++   .++|..+|++..+.. +-+......+-..+.+.|++++|.+.|+.+.+...
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p   74 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND   74 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            455566666677755554   799999999988654 33566677777899999999999999999987644

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.35  E-value=0.11  Score=38.94  Aligned_cols=74  Identities=9%  Similarity=-0.023  Sum_probs=62.1

Q ss_pred             CCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHH
Q 036589           48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLN  126 (176)
Q Consensus        48 ~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  126 (176)
                      +.+...|..+...+...|++++|...+++.... .  |+...|..+-..+.-.|++++|.+.|++....+  |...+|.
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-n--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~--P~~~t~~  347 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-E--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR--PGANTLY  347 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CSHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcChHH
Confidence            457888988888888889999999999999988 4  788888888889999999999999999887653  6665543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.13  E-value=0.12  Score=38.89  Aligned_cols=115  Identities=9%  Similarity=-0.036  Sum_probs=81.1

Q ss_pred             CCCcHHHHHHHHHHHH---hcCChHHHHHHHHHHhhcC-C-CCCch------------------HHHHHHHHHHHhccCH
Q 036589           47 FRYNLLHYDLIITKLG---RAKMFDEMQQILHQLKHDT-R-VIPEE------------------IIFCNVISFYGRARLL  103 (176)
Q Consensus        47 ~~~~~~~y~~li~~~~---~~g~~~~a~~~~~~m~~~~-g-~~~~~------------------~~~~~li~~~~~~g~~  103 (176)
                      ...|...|..++....   ..|+.+.|.+.+.+..... | +-++.                  .....++.++.+.|++
T Consensus       108 ~~~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~  187 (388)
T 2ff4_A          108 NTCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRA  187 (388)
T ss_dssp             GGBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
Confidence            3456666766665443   3578888888887776542 2 22221                  1112356777789999


Q ss_pred             HHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHH-----hccccccchHHHHH
Q 036589          104 EHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN-----LKAIAVLDGLCSNL  163 (176)
Q Consensus       104 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~-----~~~~~~p~~~t~~~  163 (176)
                      ++++..++.+.... +.+...|-.+|.++.+.|+..+|++.|+...     +.|+. |+..+-..
T Consensus       188 ~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~-P~~~l~~l  250 (388)
T 2ff4_A          188 SAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID-PGPTLRAL  250 (388)
T ss_dssp             HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC-CCHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHH
Confidence            99999988887443 4578899999999999999999999998875     46888 88766443

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=95.11  E-value=0.2  Score=30.18  Aligned_cols=45  Identities=16%  Similarity=0.259  Sum_probs=21.7

Q ss_pred             HHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcc
Q 036589           69 EMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP  114 (176)
Q Consensus        69 ~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  114 (176)
                      ++++-++.+... ...|......+.+++|.|..++..|+++|+..+
T Consensus        28 e~rrglN~l~~~-DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK   72 (109)
T 1v54_E           28 ELRKGMNTLVGY-DLVPEPKIIDAALRACRRLNDFASAVRILEVVK   72 (109)
T ss_dssp             HHHHHHHHHTTS-SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            344444444444 444555555555555555555555555554444

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=95.04  E-value=0.13  Score=38.77  Aligned_cols=71  Identities=10%  Similarity=0.010  Sum_probs=58.0

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcc-----cCCCCccHhHHHHH
Q 036589           56 LIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP-----SFNVQRTVKSLNTL  128 (176)
Q Consensus        56 ~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~~~~l  128 (176)
                      .++..+...|+++++...+..+...  ...+...+..+|.+|.+.|+..+|++.|+...     +.|+.|+..+-...
T Consensus       176 ~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~  251 (388)
T 2ff4_A          176 AKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN  251 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            4456666789999999999988866  45688899999999999999999999999865     46999987754433

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=94.71  E-value=0.74  Score=39.69  Aligned_cols=147  Identities=11%  Similarity=-0.013  Sum_probs=92.9

Q ss_pred             HHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC------
Q 036589           10 FRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV------   83 (176)
Q Consensus        10 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~------   83 (176)
                      ..++..+...+.++.|.++.... +.              ++..--.+..++...|++++|.+.|++.....+.      
T Consensus       816 ~~l~~~l~~~~~~~~~~~l~~~~-~~--------------~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~  880 (1139)
T 4fhn_B          816 TELVEKLFLFKQYNACMQLIGWL-NS--------------DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFA  880 (1139)
T ss_dssp             HHHHHHHHHHSCTTHHHHHHHHS-CC--------------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCS
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhc-cC--------------CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhh
Confidence            34666777788888888877766 33              3444445667777888899988888765322000      


Q ss_pred             ---------------CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCC--CCcc--HhHHHHHHHHHHhcCcHHHHHHH
Q 036589           84 ---------------IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFN--VQRT--VKSLNTLLNALLTCGKLDRMKEL  144 (176)
Q Consensus        84 ---------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~--~~~~~~ll~~~~~~g~~~~a~~l  144 (176)
                                     ..-..-|..++..+.+.+.++.++++-+...+..  -.++  ...|..+.+++...|++++|...
T Consensus       881 ~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~a  960 (1139)
T 4fhn_B          881 VLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVA  960 (1139)
T ss_dssp             SHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHH
T ss_pred             hhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHH
Confidence                           0011235667777777788777776655443211  1122  22578888888888999988888


Q ss_pred             HHHHHhccccccchHHHHHHHHHhhccccC
Q 036589          145 FISFNLKAIAVLDGLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       145 ~~~m~~~~~~~p~~~t~~~li~~~~~~g~~  174 (176)
                      +-.+......   ......||...|..|++
T Consensus       961 L~~~pd~~~r---~~cLr~LV~~lce~~~~  987 (1139)
T 4fhn_B          961 LMVLSTTPLK---KSCLLDFVNQLTKQGKI  987 (1139)
T ss_dssp             HHHHHHSSSC---HHHHHHHHHHHHHHCCH
T ss_pred             HHhCCCHHHH---HHHHHHHHHHHHhCCCh
Confidence            8777654332   45666777777766654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=94.68  E-value=0.91  Score=33.46  Aligned_cols=140  Identities=6%  Similarity=-0.102  Sum_probs=99.2

Q ss_pred             HHHhccChh-HHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCC----------hHHHHHHHHHHhhcCCC
Q 036589           15 LLHLQKHPK-LALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKM----------FDEMQQILHQLKHDTRV   83 (176)
Q Consensus        15 ~~~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~----------~~~a~~~~~~m~~~~g~   83 (176)
                      ...+.|.++ +|+++++.+ ...          .+-+..+|+.=-..+...+.          ++++..+++.+...  .
T Consensus        38 ~~~~~~e~s~eaL~~t~~~-L~~----------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--~  104 (331)
T 3dss_A           38 QKRQAGELDESVLELTSQI-LGA----------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--N  104 (331)
T ss_dssp             HHHHTTCCSHHHHHHHHHH-HTT----------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--C
T ss_pred             HHHHcCCCCHHHHHHHHHH-HHH----------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--C
Confidence            344567776 789999997 221          11234445543333333332          67888999998876  3


Q ss_pred             CCchHHHHHHHHHHHhcc--CHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCc-HHHHHHHHHHHHhccccccchHH
Q 036589           84 IPEEIIFCNVISFYGRAR--LLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGK-LDRMKELFISFNLKAIAVLDGLC  160 (176)
Q Consensus        84 ~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-~~~a~~l~~~m~~~~~~~p~~~t  160 (176)
                      +-+..+|+.--..+.+.|  .+++++.+++.+.+.. +-|..+|+.---.+.+.|. ++++++.+..+.+..+.  |...
T Consensus       105 PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~--N~SA  181 (331)
T 3dss_A          105 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS--NYSS  181 (331)
T ss_dssp             TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC--CHHH
T ss_pred             CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC--CHHH
Confidence            457778888777777888  4899999999999655 4588888877777778888 69999999999998876  7777


Q ss_pred             HHHHHHHhhc
Q 036589          161 SNLKIIMNDS  170 (176)
Q Consensus       161 ~~~li~~~~~  170 (176)
                      |+..-..+.+
T Consensus       182 W~~R~~ll~~  191 (331)
T 3dss_A          182 WHYRSCLLPQ  191 (331)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7665555443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=94.48  E-value=0.51  Score=36.68  Aligned_cols=93  Identities=11%  Similarity=0.065  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcc-CHHHHHHHHHhcccCCCCccHhHHHHHHH
Q 036589           52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRAR-LLEHALQVFDEMPSFNVQRTVKSLNTLLN  130 (176)
Q Consensus        52 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~  130 (176)
                      ..|-..+....+.+.++.|..+|+.. +..+  .+...|......-...+ +.+.|..+|+...+.- .-+...|...++
T Consensus       287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid  362 (493)
T 2uy1_A          287 LLRINHLNYVLKKRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFL  362 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence            34555566666678899999999999 3312  23344432222222234 6999999999877532 123445677888


Q ss_pred             HHHhcCcHHHHHHHHHHH
Q 036589          131 ALLTCGKLDRMKELFISF  148 (176)
Q Consensus       131 ~~~~~g~~~~a~~l~~~m  148 (176)
                      ...+.|+.+.|..+|+..
T Consensus       363 ~e~~~~~~~~aR~l~er~  380 (493)
T 2uy1_A          363 FLLRIGDEENARALFKRL  380 (493)
T ss_dssp             HHHHHTCHHHHHHHHHHS
T ss_pred             HHHHcCCHHHHHHHHHHH
Confidence            888899999999888875

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=94.30  E-value=0.44  Score=30.62  Aligned_cols=84  Identities=11%  Similarity=-0.041  Sum_probs=66.4

Q ss_pred             ccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHH
Q 036589           19 QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYG   98 (176)
Q Consensus        19 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~   98 (176)
                      +|++......+-.+ ..              +....+..++.+...|.-++..+++.++...  -+|+....-.+..+|.
T Consensus        74 C~NlKrVi~C~~~~-n~--------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n--~~~~~~~l~kia~Ay~  136 (172)
T 1wy6_A           74 CQNLKSVVECGVIN-NT--------------LNEHVNKALDILVIQGKRDKLEEIGREILKN--NEVSASILVAIANALR  136 (172)
T ss_dssp             CSCTHHHHHHHHHT-TC--------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHH
T ss_pred             hhcHHHHHHHHHHh-cc--------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc--CCCChHHHHHHHHHHH
Confidence            55666666666666 22              4566788899999999999999999996544  4677778888999999


Q ss_pred             hccCHHHHHHHHHhcccCCCC
Q 036589           99 RARLLEHALQVFDEMPSFNVQ  119 (176)
Q Consensus        99 ~~g~~~~a~~~~~~m~~~~~~  119 (176)
                      +.|+..+|.+++.+.=+.|++
T Consensus       137 Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A          137 RVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HTTCHHHHHHHHHHHHHTTCH
T ss_pred             HhcchhhHHHHHHHHHHhhhH
Confidence            999999999999988777754

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=93.97  E-value=0.17  Score=32.88  Aligned_cols=66  Identities=14%  Similarity=-0.079  Sum_probs=53.2

Q ss_pred             CcHHHHHHHHHHHHhcC---ChHHHHHHHHHHhhcCCCCC--chHHHHHHHHHHHhccCHHHHHHHHHhcccC
Q 036589           49 YNLLHYDLIITKLGRAK---MFDEMQQILHQLKHDTRVIP--EEIIFCNVISFYGRARLLEHALQVFDEMPSF  116 (176)
Q Consensus        49 ~~~~~y~~li~~~~~~g---~~~~a~~~~~~m~~~~g~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  116 (176)
                      ++..+.-.+..++++.+   +++++..++++..+. . .|  ....+-.|--+|.+.|++++|.+.++.+.+.
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i  100 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  100 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            57777777888888888   777999999999988 4 23  3444455788889999999999999999864

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=93.70  E-value=0.16  Score=33.01  Aligned_cols=107  Identities=8%  Similarity=0.062  Sum_probs=64.6

Q ss_pred             CCCCCCCCHHHHHHHHHhccCh------hHHHHhhcCCCCCCCCCCCCCCCCCCCc----HHHHHHHHHHH---HhcCCh
Q 036589            1 MNKAKPTSPFRLASLLHLQKHP------KLALQLFKNPNPNANDTEAPPLKPFRYN----LLHYDLIITKL---GRAKMF   67 (176)
Q Consensus         1 ~~~p~~~~~~~l~~~~~~~~~~------~~A~~~~~~~~~~~~~~~~~~~~~~~~~----~~~y~~li~~~---~~~g~~   67 (176)
                      |+.-|+.+|-..+..+-+.|++      ++..++|++.. .          .++|+    -..|--+---|   ...++.
T Consensus         8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAi-a----------~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~   76 (161)
T 4h7y_A            8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAI-E----------ALPPDKYGQNESFARIQVRFAELKAIQEP   76 (161)
T ss_dssp             --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHH-H----------HSCGGGGTTCHHHHHHHHHHHHHHHHHCG
T ss_pred             eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHH-H----------cCCccccccHHHHHHHHHHHHHHHHhcCH
Confidence            3455667888888888888998      77778888762 2          22222    11222121111   134677


Q ss_pred             HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCc
Q 036589           68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR  120 (176)
Q Consensus        68 ~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p  120 (176)
                      ++|.++|+.+.+. +-+. ...|-.-.+.=.+.|++..|.+++......+.+|
T Consensus        77 d~aR~vy~~a~~~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           77 DDARDYFQMARAN-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             GGCHHHHHHHHHH-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred             HHHHHHHHHHHHH-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence            7778888777654 3333 5566656666666777777777777776655443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=93.70  E-value=0.89  Score=29.61  Aligned_cols=114  Identities=11%  Similarity=0.029  Sum_probs=80.3

Q ss_pred             cHHHHHHHHHHHHhcCCh------HHHHHHHHHHhhcCCCCCchHH----HHHHH---HHHHhccCHHHHHHHHHhcccC
Q 036589           50 NLLHYDLIITKLGRAKMF------DEMQQILHQLKHDTRVIPEEII----FCNVI---SFYGRARLLEHALQVFDEMPSF  116 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~------~~a~~~~~~m~~~~g~~~~~~~----~~~li---~~~~~~g~~~~a~~~~~~m~~~  116 (176)
                      |..+|=..+.-.-+.|+.      ++..++|++....  ++|+...    |--|-   ..+...++.++|.++|+.+.+.
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~   89 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN   89 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            677787788888888999      8999999988876  4554311    11111   1113458899999999999765


Q ss_pred             CCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHh
Q 036589          117 NVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMN  168 (176)
Q Consensus       117 ~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~  168 (176)
                      .-.. ...|-....-=.+.|++++|.+++......+..  +.....+.|..+
T Consensus        90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k--~~~~le~a~~nl  138 (161)
T 4h7y_A           90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV--PLEMLEIALRNL  138 (161)
T ss_dssp             CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB--CHHHHHHHHHHH
T ss_pred             hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC--cHHHHHHHHHhh
Confidence            3233 666666667678899999999999999988876  445555555443

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=93.27  E-value=0.0029  Score=49.24  Aligned_cols=143  Identities=10%  Similarity=0.033  Sum_probs=107.4

Q ss_pred             CCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Q 036589            5 KPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI   84 (176)
Q Consensus         5 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~   84 (176)
                      .+..|+.|-.+....+++.+|++-|-+. .               |+..|..+|.+..+.|.+++..+.++..++. .-.
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-~---------------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke  115 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-D---------------DPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARE  115 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSCCC-S---------------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCS
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHHhC-C---------------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcc
Confidence            4567888999999999999998877666 1               5667888999999999999999999887766 333


Q ss_pred             CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh--------------
Q 036589           85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL--------------  150 (176)
Q Consensus        85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~--------------  150 (176)
                      |  ..=+.|+.+|++.+++.+       |.+.=-.||..-...+-+-|...|.++.|.-+|.....              
T Consensus       116 ~--~IDteLi~ayAk~~rL~e-------lEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~y  186 (624)
T 3lvg_A          116 S--YVETELIFALAKTNRLAE-------LEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEY  186 (624)
T ss_dssp             T--TTTHHHHHHHHTSCSSST-------TTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGG
T ss_pred             c--ccHHHHHHHHHhhCcHHH-------HHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence            3  444789999999999654       33332347777777888888888888888777755421              


Q ss_pred             ------ccccccchHHHHHHHHHhhccccC
Q 036589          151 ------KAIAVLDGLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       151 ------~~~~~p~~~t~~~li~~~~~~g~~  174 (176)
                            ..-. -++.||-.+-.+|...+.+
T Consensus       187 q~AVdaArKA-ns~ktWKeV~~ACvd~~Ef  215 (624)
T 3lvg_A          187 QAAVDGARKA-NSTRTWKEVCFACVDGKEF  215 (624)
T ss_dssp             GSSTTTTTTC-CSSCSHHHHTHHHHHSCTT
T ss_pred             HHHHHHHHhc-CChhHHHHHHHHHhCchHH
Confidence                  1112 5678898888888887765

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=93.07  E-value=0.74  Score=29.33  Aligned_cols=61  Identities=10%  Similarity=0.005  Sum_probs=39.8

Q ss_pred             HHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHH
Q 036589          105 HALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIM  167 (176)
Q Consensus       105 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~  167 (176)
                      +..+-++.+....+.|++.....-|++|.+.+++..|.++|+..+.+.-  +...+|..+++-
T Consensus        71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lqE  131 (152)
T 2y69_E           71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQE  131 (152)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHHH
Confidence            4445555556666777777777777777777777777777777655432  345556666553

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=92.48  E-value=1.7  Score=35.79  Aligned_cols=120  Identities=11%  Similarity=-0.003  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHhcCC-hHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccC-HHHHHHHHHhcccC------CCCc-cHh
Q 036589           53 HYDLIITKLGRAKM-FDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL-LEHALQVFDEMPSF------NVQR-TVK  123 (176)
Q Consensus        53 ~y~~li~~~~~~g~-~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~------~~~p-~~~  123 (176)
                      --..++..+...++ .+.|..+++++... ....+......++..+...++ --+|++++.+..+.      ...+ +..
T Consensus       250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~-~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~  328 (754)
T 4gns_B          250 LMYSLKSFIAITPSLVDFTIDYLKGLTKK-DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD  328 (754)
T ss_dssp             HHHHHHHHHHTCGGGHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHHHHhh-CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence            34556666666666 57899999999887 332233223334444333332 22444444433210      0111 110


Q ss_pred             ---HH---HHHH----HHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589          124 ---SL---NTLL----NALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       124 ---~~---~~ll----~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                         ..   ..||    .-|...|+++-|+++-++....-+.  +-.||-.|..+|...|+++
T Consensus       329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs--eF~tW~~La~vYi~l~d~e  388 (754)
T 4gns_B          329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD--SFESWYNLARCHIKKEEYE  388 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--CHHHHHHHHHHHHHTTCHH
T ss_pred             cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch--hhHHHHHHHHHHHHhccHH
Confidence               01   1233    3455689999999999998776554  7889999999999999875

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=92.28  E-value=0.69  Score=27.86  Aligned_cols=64  Identities=9%  Similarity=-0.031  Sum_probs=50.8

Q ss_pred             CHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHH
Q 036589          102 LLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIM  167 (176)
Q Consensus       102 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~  167 (176)
                      +.=+..+-+..+-...+.|++....+.|++|.+.+++..|.++|+..+.+.-.  ...+|..+++-
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lqE   88 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQE   88 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHHH
Confidence            34466777778888888999999999999999999999999999988765433  45578777764

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.39  E-value=4.5  Score=34.95  Aligned_cols=127  Identities=13%  Similarity=0.056  Sum_probs=84.9

Q ss_pred             HHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCC-------------CCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 036589           10 FRLASLLHLQKHPKLALQLFKNPNPNANDTEAPP-------------LKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQ   76 (176)
Q Consensus        10 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~   76 (176)
                      -.+-..|...|++++|.+.|++. ...-......             ......-..-|..++..+-+.+.++.+.++-+.
T Consensus       846 yl~g~~~L~~ge~~~A~~~F~ka-a~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~l  924 (1139)
T 4fhn_B          846 YLKALIYLKSKEAVKAVRCFKTT-SLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLL  924 (1139)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTC-CCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHH-hhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            34556788899999999999987 3221111000             000111234577888889999999998887776


Q ss_pred             HhhcCCCCCc---hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHH
Q 036589           77 LKHDTRVIPE---EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD  139 (176)
Q Consensus        77 m~~~~g~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~  139 (176)
                      ..+..+...+   ...|..+.+++...|++++|...+-.+.....+  ..+...|+..+|..|..+
T Consensus       925 Ai~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~  988 (1139)
T 4fhn_B          925 ADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKIN  988 (1139)
T ss_dssp             HHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHH
T ss_pred             HHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChh
Confidence            6654222222   236888999999999999999999888754433  456677777777666543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.17  E-value=4  Score=31.08  Aligned_cols=96  Identities=4%  Similarity=-0.089  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcc---cCCCCccHh----H
Q 036589           53 HYDLIITKLGRAKMFDEMQQILHQLKHD-TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP---SFNVQRTVK----S  124 (176)
Q Consensus        53 ~y~~li~~~~~~g~~~~a~~~~~~m~~~-~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~p~~~----~  124 (176)
                      ++..+...|.+.|+++.|.+.|.++... .+..--...+-.+|+.+...+++..+...+++..   ..+-.|+..    .
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            4556788888999999999999999875 1233344567778999999999999998888764   233223222    1


Q ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589          125 LNTLLNALLTCGKLDRMKELFISFNL  150 (176)
Q Consensus       125 ~~~ll~~~~~~g~~~~a~~l~~~m~~  150 (176)
                      |..+  .+...+++..|.+.|-+...
T Consensus       213 ~~gl--~~l~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          213 YYGI--HCLAVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HHHH--GGGGTSCHHHHHHHHHHHHH
T ss_pred             HHHH--HHHHhChHHHHHHHHHHHhc
Confidence            2222  22356889999999888654

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.52  E-value=1.9  Score=32.91  Aligned_cols=99  Identities=6%  Similarity=-0.218  Sum_probs=70.3

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      ....+.+.|.+.|+++.|.+.|.++ ...       ..+...-...+-.+|..+...+++..+...+++......-.++.
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~-~~~-------~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~  204 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKS-LSK-------AISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDW  204 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHH-HHH-------HTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH-HHh-------cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCH
Confidence            5677889999999999999999998 332       13344567788889999999999999999999987542222333


Q ss_pred             HHHHHH----HHHHHhccCHHHHHHHHHhcc
Q 036589           88 IIFCNV----ISFYGRARLLEHALQVFDEMP  114 (176)
Q Consensus        88 ~~~~~l----i~~~~~~g~~~~a~~~~~~m~  114 (176)
                      ...+.+    ...+...+++.+|.+.|-+..
T Consensus       205 ~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~  235 (429)
T 4b4t_R          205 ERRNRYKTYYGIHCLAVRNFKEAAKLLVDSL  235 (429)
T ss_dssp             HHHHHHHHHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhChHHHHHHHHHHHh
Confidence            322221    112234678988888877654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=90.33  E-value=1.7  Score=31.48  Aligned_cols=78  Identities=8%  Similarity=-0.032  Sum_probs=59.7

Q ss_pred             cHHHHHHHHHHHHhc-----CChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhc-cCHHHHHHHHHhcccCCCC--cc
Q 036589           50 NLLHYDLIITKLGRA-----KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRA-RLLEHALQVFDEMPSFNVQ--RT  121 (176)
Q Consensus        50 ~~~~y~~li~~~~~~-----g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~--p~  121 (176)
                      +-..|..+...|.+.     |+.++|.+.|++..+- ...-+..++....+.+++. |+.+++.+.+++..+....  |+
T Consensus       198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L-nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~  276 (301)
T 3u64_A          198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY-CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPH  276 (301)
T ss_dssp             HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH-CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSS
T ss_pred             cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCC
Confidence            356889999999995     9999999999999977 3222356666677888884 9999999999999977655  55


Q ss_pred             HhHHHHH
Q 036589          122 VKSLNTL  128 (176)
Q Consensus       122 ~~~~~~l  128 (176)
                      ....|.+
T Consensus       277 ~~lan~~  283 (301)
T 3u64_A          277 NKLLVIL  283 (301)
T ss_dssp             CHHHHHH
T ss_pred             hhHHHHH
Confidence            4444433

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=87.49  E-value=2.7  Score=26.28  Aligned_cols=67  Identities=13%  Similarity=-0.069  Sum_probs=49.8

Q ss_pred             CcHHHHHHHHHHHHhcCChHH---HHHHHHHHhhcCC-CCCchHHHHHHHHHHHhccCHHHHHHHHHhcccC
Q 036589           49 YNLLHYDLIITKLGRAKMFDE---MQQILHQLKHDTR-VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSF  116 (176)
Q Consensus        49 ~~~~~y~~li~~~~~~g~~~~---a~~~~~~m~~~~g-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  116 (176)
                      ++..+--.+..++.+......   +..+++++.+. + ..-.....-.|.-++.+.|++++|.+.++.+.+.
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~  103 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-GSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT  103 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            456665567777887776655   88999998887 4 2123344455788999999999999999999864

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=86.31  E-value=3.8  Score=29.24  Aligned_cols=55  Identities=7%  Similarity=-0.023  Sum_probs=37.6

Q ss_pred             HHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhccc
Q 036589           59 TKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS  115 (176)
Q Consensus        59 ~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  115 (176)
                      ....+.|.++++..-...-.+.  -..|...-..+++.+|-.|+|+.|.+-++...+
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~   59 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK   59 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            3455677777777666665555  244556666778888888888888877776664

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=85.90  E-value=3.2  Score=24.96  Aligned_cols=89  Identities=12%  Similarity=-0.049  Sum_probs=56.4

Q ss_pred             cCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHH
Q 036589           64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKE  143 (176)
Q Consensus        64 ~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~  143 (176)
                      ....++|.-|=+.+... +-  ....--+-+..+...|++++|..+.+.+-    .||..+|-+|-.  .|.|..+++..
T Consensus        20 ~H~HqEA~tIAdwL~~~-~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~   90 (116)
T 2p58_C           20 NHYHEEANCIAEWLHLK-GE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALES   90 (116)
T ss_dssp             TTCHHHHHHHHHHHHHT-TC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHH
T ss_pred             chHHHHHHHHHHHHHhC-Cc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHH
Confidence            34467777777777766 33  22222223344556788888888877776    588877776643  46677777777


Q ss_pred             HHHHHHhccccccchHHHHH
Q 036589          144 LFISFNLKAIAVLDGLCSNL  163 (176)
Q Consensus       144 l~~~m~~~~~~~p~~~t~~~  163 (176)
                      -+.++...|-  |....|..
T Consensus        91 rL~~la~sg~--p~~q~Fa~  108 (116)
T 2p58_C           91 RLNRLARSQD--PRIQTFVN  108 (116)
T ss_dssp             HHHHHTTCCC--HHHHHHHH
T ss_pred             HHHHHHhCCC--HHHHHHHH
Confidence            7777776665  35555543

>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A

Probab=84.49  E-value=4.4  Score=26.15  Aligned_cols=66  Identities=9%  Similarity=0.183  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccC--HHHHHHHHHhcccCCCCc
Q 036589           53 HYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL--LEHALQVFDEMPSFNVQR  120 (176)
Q Consensus        53 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p  120 (176)
                      ..+.+|.-|...|+.++|.+.++++... .+ -...+...+..++-+.++  -+.+..++..+...++.+
T Consensus        11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p-~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is   78 (152)
T 2ion_A           11 EIDMLLKEYLLSGDISEAEHCLKELEVP-HF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT   78 (152)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHTCG-GG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHhCCC-cc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence            4566788888888888888888888643 22 234455556666655322  455667777776555443

>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A

Probab=84.27  E-value=5.7  Score=24.80  Aligned_cols=65  Identities=9%  Similarity=0.187  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccC--HHHHHHHHHhcccCCCC
Q 036589           53 HYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARL--LEHALQVFDEMPSFNVQ  119 (176)
Q Consensus        53 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~  119 (176)
                      ....++.-|...|+.++|.+.++++... .+ -.......+..++-+.++  -+....++..+...|+.
T Consensus         9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p-~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i   75 (129)
T 2nsz_A            9 EIDMLLKEYLLSGDISEAEHCLKELEVP-HF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI   75 (129)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHTCG-GG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHhCCC-cc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence            3456777788888888888888887643 22 234444555556555432  35566667666654433

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=83.32  E-value=6.8  Score=24.99  Aligned_cols=64  Identities=11%  Similarity=0.104  Sum_probs=49.8

Q ss_pred             ChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHH
Q 036589           66 MFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA  131 (176)
Q Consensus        66 ~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~  131 (176)
                      +.-+..+-++.+... .+.|+.....+-+++|.+..++..|+++|+-.+.. +.+....|..++.-
T Consensus        68 D~wElrrglN~l~~~-DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lqE  131 (152)
T 2y69_E           68 DAWELRKGMNTLVGY-DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE  131 (152)
T ss_dssp             CHHHHHHHHHHHTTS-SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred             cHHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHHH
Confidence            455677777777777 89999999999999999999999999999988832 12334456666543

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=81.77  E-value=2.9  Score=25.11  Aligned_cols=89  Identities=12%  Similarity=-0.033  Sum_probs=58.7

Q ss_pred             cCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHH
Q 036589           64 AKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKE  143 (176)
Q Consensus        64 ~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~  143 (176)
                      ....++|.-|=+.+... +-  ....--+-+..+...|++++|..+.+.+-    .||..+|-+|-.  .|.|..+++..
T Consensus        19 ~H~HqEA~tIAdwL~~~-~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~   89 (115)
T 2uwj_G           19 QHCHEEALCIAEWLERL-GQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDR   89 (115)
T ss_dssp             TTCHHHHHHHHHHHHHT-TC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred             chHHHHHHHHHHHHHhC-Cc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHH
Confidence            34567787777777766 33  22222233444556788888888777766    588888776643  57788888888


Q ss_pred             HHHHHHhccccccchHHHHH
Q 036589          144 LFISFNLKAIAVLDGLCSNL  163 (176)
Q Consensus       144 l~~~m~~~~~~~p~~~t~~~  163 (176)
                      -+.++..+|-+  ....|..
T Consensus        90 rL~~la~sg~p--~~q~Fa~  107 (115)
T 2uwj_G           90 RLAGLGGSSDP--ALADFAA  107 (115)
T ss_dssp             HHHHHHTCSSH--HHHHHHH
T ss_pred             HHHHHHhCCCH--HHHHHHH
Confidence            88787777663  5555543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=81.68  E-value=4.4  Score=25.96  Aligned_cols=47  Identities=9%  Similarity=-0.077  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhccc
Q 036589           68 DEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPS  115 (176)
Q Consensus        68 ~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  115 (176)
                      .++..+++++.+. +..-.....-.|.-++.|.|++++|.+..+.+.+
T Consensus        59 ~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~  105 (144)
T 1y8m_A           59 RLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  105 (144)
T ss_dssp             HHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            3455555555544 2222222223344555555555555555555553

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=81.58  E-value=3.8  Score=25.89  Aligned_cols=59  Identities=8%  Similarity=-0.045  Sum_probs=27.8

Q ss_pred             HHHHHHhccC---HHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589           93 VISFYGRARL---LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLK  151 (176)
Q Consensus        93 li~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~  151 (176)
                      ...++.+...   ..+++.+++++.+.+-.-...+.--|--++.+.|++++|.+..+.+.+.
T Consensus        46 yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           46 YAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            3444444433   3345555555543331112334444445555555555555555555543

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=80.88  E-value=11  Score=25.65  Aligned_cols=85  Identities=8%  Similarity=-0.086  Sum_probs=58.1

Q ss_pred             HHHHHHhhcCCCCCchHHHHHHHHHHHh--ccCHHHHHHHHHhcccCCCCc-cHhHHHHHHHHHHhcCcHHHHHHHHHHH
Q 036589           72 QILHQLKHDTRVIPEEIIFCNVISFYGR--ARLLEHALQVFDEMPSFNVQR-TVKSLNTLLNALLTCGKLDRMKELFISF  148 (176)
Q Consensus        72 ~~~~~m~~~~g~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m  148 (176)
                      +...........+=|..-....|..---  ++...++..+|..|.+.|+-. -...|......+...|++.+|.++|+.-
T Consensus        62 rc~~~F~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G  141 (202)
T 3esl_A           62 RCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELG  141 (202)
T ss_dssp             HHHHHHTTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhcccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3333333332344455444444443333  455779999999999877644 4566788889999999999999999998


Q ss_pred             Hhccccccc
Q 036589          149 NLKAIAVLD  157 (176)
Q Consensus       149 ~~~~~~~p~  157 (176)
                      ++.+-. |-
T Consensus       142 I~~~A~-P~  149 (202)
T 3esl_A          142 AENNCR-PY  149 (202)
T ss_dssp             HHTTCB-SH
T ss_pred             HHcCCc-cH
Confidence            877666 64

>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14

Probab=80.57  E-value=13  Score=27.25  Aligned_cols=100  Identities=14%  Similarity=0.102  Sum_probs=55.4

Q ss_pred             HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCCCCch
Q 036589            9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAK-MFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      ...++.-|...|+.++|.+.++++ ..         +.+.| ..++..+..++-+.. .-+.+-+++..+.+. ++-...
T Consensus        14 ~~~ll~Ey~~~~d~~Ea~~ci~el-~~---------p~~~~-~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~-~~is~~   81 (339)
T 1ug3_A           14 SKAIIEEYLHLNDMKEAVQCVQEL-AS---------PSLLF-IFVRHGVESTLERSAIAREHMGQLLHQLLCA-GHLSTA   81 (339)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHTT-CC---------GGGHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHT-TSSCHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHc-CC---------cccHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHC-CCCCHH
Confidence            356788999999999999999999 33         22322 334444444443322 234566788888877 544333


Q ss_pred             HHHHHHHHHHHhccC----HHHHHHHHHh----cccCCCCc
Q 036589           88 IIFCNVISFYGRARL----LEHALQVFDE----MPSFNVQR  120 (176)
Q Consensus        88 ~~~~~li~~~~~~g~----~~~a~~~~~~----m~~~~~~p  120 (176)
                      .....+-+.+....+    ...|...+..    +...|+.|
T Consensus        82 ~~~~Gf~~~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~  122 (339)
T 1ug3_A           82 QYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEGGVP  122 (339)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCC
T ss_pred             HHHHHHHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCC
Confidence            332333333333332    3344444444    44556544

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=80.23  E-value=8.3  Score=27.53  Aligned_cols=98  Identities=11%  Similarity=0.056  Sum_probs=58.0

Q ss_pred             CCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCC-CccHhHH
Q 036589           48 RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT-RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNV-QRTVKSL  125 (176)
Q Consensus        48 ~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~-g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~  125 (176)
                      +-|...-..+++-+|-.|++++|.+-++...+-. ...|...+|-.+|.+    ....  .++|.-=..=++ .....-.
T Consensus        28 P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a----E~~R--~~vfaG~~~P~~~g~~~~w~  101 (273)
T 1zbp_A           28 PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA----AQAR--KDFAQGAATAKVLGENEELT  101 (273)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH----HHHH--HHHTTSCCCEECCCSCHHHH
T ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH----HHHH--HHHHcCCCCCCCCCCCHHHH
Confidence            3467777789999999999999998888777551 134444455555554    1111  123332111001 1122234


Q ss_pred             HHHHHHHHh--cCcHHHHHHHHHHHHhc
Q 036589          126 NTLLNALLT--CGKLDRMKELFISFNLK  151 (176)
Q Consensus       126 ~~ll~~~~~--~g~~~~a~~l~~~m~~~  151 (176)
                      ..++.++..  .|+.++|.++-....+.
T Consensus       102 ~~ll~Al~~~~~G~~~~A~~lr~~A~e~  129 (273)
T 1zbp_A          102 KSLVSFNLSMVSQDYEQVSELALQIEEL  129 (273)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence            456666543  59999999988887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	176
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.25
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.16
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.95
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.88
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.83
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.71
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.69
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.68
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.67
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.6
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.57
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.47
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.46
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.44
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.39
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.38
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.35
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.32
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.3
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.3
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.2
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.19
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.16
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.16
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.15
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.13
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.12
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.05
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.97
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.91
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.89
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.77
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.76
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.68
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.63
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.63
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	97.59
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	97.59
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.55
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.48
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.46
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.4
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	97.29
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.16
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.15
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.98
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.94
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.91
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.84
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.83
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.45
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.09
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	95.66
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	94.97
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	94.9
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.32
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	92.2
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	91.65
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	91.52
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	91.42
d1ug3a1	193	Eukaryotic initiation factor eIF4G {Human (Homo sa	86.72
d2nsza1	129	Programmed cell death 4, PDCD4 {Mouse (Mus musculu	84.43
d1khda1	69	Anthranilate phosphoribosyltransferase (TrpD) {Pec	84.4
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	81.29

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.6e-10  Score=83.77  Aligned_cols=150  Identities=11%  Similarity=-0.051  Sum_probs=100.7

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      .+..+-..+.+.|++++|++.|++....           .+-+..+|..+...+.+.|++++|.+.++.....  .+.+.
T Consensus       239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~-----------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~  305 (388)
T d1w3ba_         239 VHGNLACVYYEQGLIDLAIDTYRRAIEL-----------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHA  305 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHT-----------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccc
Confidence            4455666677777777777777765111           1224566777777777777777777777776655  34455


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHH
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIM  167 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~  167 (176)
                      ..+..+...+.+.|++++|+..|++..+.. +-+...+..+-..|.+.|++++|.+.|++..+..+.  +...|..|...
T Consensus       306 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~--~~~a~~~lg~~  382 (388)
T d1w3ba_         306 DSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT--FADAYSNMGNT  382 (388)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT--CHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Confidence            666777777777888888888887776542 224556777777778888888888888777665433  46677777777


Q ss_pred             hhcccc
Q 036589          168 NDSQVR  173 (176)
Q Consensus       168 ~~~~g~  173 (176)
                      |-+.|+
T Consensus       383 ~~~~~D  388 (388)
T d1w3ba_         383 LKEMQD  388 (388)
T ss_dssp             HHHTCC
T ss_pred             HHHcCC
Confidence            766654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=3.6e-10  Score=81.92  Aligned_cols=153  Identities=10%  Similarity=0.016  Sum_probs=123.7

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCc
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~   86 (176)
                      ..|..+...+...|++++|+..|+.. ...          .+.+...+..+...+.+.|++++|...|++..+. . +-+
T Consensus       204 ~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~-p~~  270 (388)
T d1w3ba_         204 DAYINLGNVLKEARIFDRAVAAYLRA-LSL----------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL-Q-PHF  270 (388)
T ss_dssp             HHHHHHHHHHHTTTCTTHHHHHHHHH-HHH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-C-SSC
T ss_pred             HHHHHHhhhhhccccHHHHHHHHHHh-HHH----------hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-C-CCC
Confidence            35677778888899999999999887 221          1336777888889999999999999999998865 2 234


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHH
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKII  166 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~  166 (176)
                      ...+..+...+.+.|++++|++.|+...... +.+...+..+...+.+.|++++|.+.|++..+....  +..+|..+-.
T Consensus       271 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~  347 (388)
T d1w3ba_         271 PDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE--FAAAHSNLAS  347 (388)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT--CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHH
Confidence            5678889999999999999999999877443 457778888899999999999999999998876543  6778888999


Q ss_pred             HhhccccCC
Q 036589          167 MNDSQVRVT  175 (176)
Q Consensus       167 ~~~~~g~~~  175 (176)
                      .|.+.|+++
T Consensus       348 ~~~~~g~~~  356 (388)
T d1w3ba_         348 VLQQQGKLQ  356 (388)
T ss_dssp             HHHTTTCCH
T ss_pred             HHHHcCCHH
Confidence            999998875

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=8.7e-09  Score=73.61  Aligned_cols=153  Identities=10%  Similarity=-0.050  Sum_probs=86.1

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC------
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT------   81 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~------   81 (176)
                      .|..+...+...|++++|+..|++.. +.          .+-+...|..+..+|...|++++|.+.+++.....      
T Consensus        55 a~~~lg~~~~~~~~~~~A~~~~~~al-~~----------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  123 (323)
T d1fcha_          55 AWQYLGTTQAENEQELLAISALRRCL-EL----------KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL  123 (323)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH-HH----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGG
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHhhh-cc----------ccccccccccccccccccccccccccchhhHHHhccchHHH
Confidence            45555566666666666666666541 11          01144555566666666666666666555543220      


Q ss_pred             -------------------------------------------CCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCC
Q 036589           82 -------------------------------------------RVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNV  118 (176)
Q Consensus        82 -------------------------------------------g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  118 (176)
                                                                 .-..+...+..+...+...|++++|+..|++..... 
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-  202 (323)
T d1fcha_         124 VTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-  202 (323)
T ss_dssp             CC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-
Confidence                                                       001122334445556666677777777776655432 


Q ss_pred             CccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccC
Q 036589          119 QRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRV  174 (176)
Q Consensus       119 ~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~  174 (176)
                      +-+...|..+-..|.+.|++++|.+.|++..+....  +..+|..+-.+|.+.|++
T Consensus       203 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~a~~~lg~~~~~~g~~  256 (323)
T d1fcha_         203 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG--YIRSRYNLGISCINLGAH  256 (323)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCH
T ss_pred             cccccchhhhhhcccccccchhHHHHHHHHHHHhhc--cHHHHHHHHHHHHHCCCH
Confidence            224555666666777777777777777766654433  455666666666666654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2.4e-07  Score=61.73  Aligned_cols=141  Identities=11%  Similarity=-0.060  Sum_probs=110.0

Q ss_pred             HHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHH
Q 036589           14 SLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNV   93 (176)
Q Consensus        14 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~l   93 (176)
                      ..+...|++++|++.|+++ ..             |+..+|..+..+|.+.|++++|.+.|++..+. . +-+...|..+
T Consensus        13 ~~~~~~~d~~~Al~~~~~i-~~-------------~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l-d-p~~~~a~~~~   76 (192)
T d1hh8a_          13 VLAADKKDWKGALDAFSAV-QD-------------PHSRICFNIGCMYTILKNMTEAEKAFTRSINR-D-KHLAVAYFQR   76 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHTS-SS-------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHhc-CC-------------CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH-h-hhhhhhHHHH
Confidence            4567789999999999987 22             36778889999999999999999999999977 2 3456788889


Q ss_pred             HHHHHhccCHHHHHHHHHhcccCC------------CC--c-cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccch
Q 036589           94 ISFYGRARLLEHALQVFDEMPSFN------------VQ--R-TVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDG  158 (176)
Q Consensus        94 i~~~~~~g~~~~a~~~~~~m~~~~------------~~--p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~  158 (176)
                      -.+|.+.|++++|+..|++.....            ..  + ...++..+-.++.+.|++++|.+.|....+.... |+.
T Consensus        77 g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~-~~~  155 (192)
T d1hh8a_          77 GMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE-PRH  155 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS-GGG
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cch
Confidence            999999999999999998865321            11  1 1245667778899999999999999998887666 666


Q ss_pred             HHHHHHHHHhhcc
Q 036589          159 LCSNLKIIMNDSQ  171 (176)
Q Consensus       159 ~t~~~li~~~~~~  171 (176)
                      .....-+..+.+.
T Consensus       156 ~~~~~Al~~~~~~  168 (192)
T d1hh8a_         156 SKIDKAMECVWKQ  168 (192)
T ss_dssp             GHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhh
Confidence            5566555555443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=7.9e-08  Score=68.46  Aligned_cols=150  Identities=9%  Similarity=-0.041  Sum_probs=116.6

Q ss_pred             HHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHH
Q 036589           11 RLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIF   90 (176)
Q Consensus        11 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~   90 (176)
                      -.-..+.+.|++++|+..|+...+.           .+-+...|..+..++...|++++|...|++..+. . +-+...+
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~-----------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-~-p~~~~~~   90 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQ-----------DPKHMEAWQYLGTTQAENEQELLAISALRRCLEL-K-PDNQTAL   90 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHS-----------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc-c-ccccccc
Confidence            3455678899999999999997322           1336889999999999999999999999998876 2 2356777


Q ss_pred             HHHHHHHHhccCHHHHHHHHHhcccCC--------------------------------------------------CCc
Q 036589           91 CNVISFYGRARLLEHALQVFDEMPSFN--------------------------------------------------VQR  120 (176)
Q Consensus        91 ~~li~~~~~~g~~~~a~~~~~~m~~~~--------------------------------------------------~~p  120 (176)
                      ..+...|...|++++|.+.+++.....                                                  -.+
T Consensus        91 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~  170 (323)
T d1fcha_          91 MALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI  170 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred             ccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccc
Confidence            888899999999999998887754211                                                  012


Q ss_pred             cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589          121 TVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       121 ~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      +...+..+...+...|++++|...|++.......  +...|..+-..|.+.|+++
T Consensus       171 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~  223 (323)
T d1fcha_         171 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN--DYLLWNKLGATLANGNQSE  223 (323)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHH
T ss_pred             ccccchhhHHHHHHHHHHhhhhcccccccccccc--cccchhhhhhcccccccch
Confidence            3345666777888899999999999998776554  6778888888888888764

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.1e-07  Score=68.19  Aligned_cols=150  Identities=7%  Similarity=0.007  Sum_probs=118.7

Q ss_pred             HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCCCCch
Q 036589            9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAK-MFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g-~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      ++.+-..+.+.+..++|+++++.+..-           .+-+...|+....++...| ++++|...++...+.  -+-+.
T Consensus        46 ~~~~~~~~~~~e~~~~Al~~~~~ai~l-----------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~  112 (315)
T d2h6fa1          46 YDYFRAVLQRDERSERAFKLTRDAIEL-----------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNY  112 (315)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCH
T ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHHH-----------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhh
Confidence            344555677788999999999998221           1336778888888888876 489999999998876  23467


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHH
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIM  167 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~  167 (176)
                      .+|+.+-..+.+.|++++|++.|+++.+.. +-+...|+.+...+.+.|++++|++.|+...+..+.  +...|+.+-..
T Consensus       113 ~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~--n~~a~~~r~~~  189 (315)
T d2h6fa1         113 QVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR--NNSVWNQRYFV  189 (315)
T ss_dssp             HHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT--CHHHHHHHHHH
T ss_pred             hHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc--cHHHHHHHHHH
Confidence            888889999999999999999999998654 347888999999999999999999999999987765  67777766665


Q ss_pred             hhccccC
Q 036589          168 NDSQVRV  174 (176)
Q Consensus       168 ~~~~g~~  174 (176)
                      +.+.++.
T Consensus       190 l~~~~~~  196 (315)
T d2h6fa1         190 ISNTTGY  196 (315)
T ss_dssp             HHHTTCS
T ss_pred             HHHcccc
Confidence            5555543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.69  E-value=4.8e-07  Score=59.94  Aligned_cols=99  Identities=12%  Similarity=-0.003  Sum_probs=86.4

Q ss_pred             CcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHH
Q 036589           49 YNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTL  128 (176)
Q Consensus        49 ~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  128 (176)
                      |+...+-.....+.+.|++++|...|++.....  +-+...|+.+..+|.+.|++++|+..|++..+.. +-+..+|..+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~l   78 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL   78 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHH
Confidence            577777888899999999999999999988762  4567788999999999999999999999998653 2357789999


Q ss_pred             HHHHHhcCcHHHHHHHHHHHHh
Q 036589          129 LNALLTCGKLDRMKELFISFNL  150 (176)
Q Consensus       129 l~~~~~~g~~~~a~~l~~~m~~  150 (176)
                      -.+|.+.|++++|...|+...+
T Consensus        79 g~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999998765

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=1.1e-06  Score=53.68  Aligned_cols=105  Identities=10%  Similarity=-0.053  Sum_probs=87.6

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHh
Q 036589           55 DLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLT  134 (176)
Q Consensus        55 ~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  134 (176)
                      ..-...+.+.|++++|...|++..+.  -+-+...|..+-.+|.+.|++++|+..|+...+.. +.+...|..+..++..
T Consensus         7 ~~~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~   83 (117)
T d1elwa_           7 KEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF   83 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHH
Confidence            34567788999999999999999976  24456778999999999999999999999998655 5588899999999999


Q ss_pred             cCcHHHHHHHHHHHHhccccccchHHHHHH
Q 036589          135 CGKLDRMKELFISFNLKAIAVLDGLCSNLK  164 (176)
Q Consensus       135 ~g~~~~a~~l~~~m~~~~~~~p~~~t~~~l  164 (176)
                      .|++++|+..|++..+..+.  +...+..+
T Consensus        84 ~~~~~~A~~~~~~a~~~~p~--~~~~~~~l  111 (117)
T d1elwa_          84 LNRFEEAKRTYEEGLKHEAN--NPQLKEGL  111 (117)
T ss_dssp             TTCHHHHHHHHHHHHTTCTT--CHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCCC--CHHHHHHH
Confidence            99999999999999886554  44444443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=6.7e-07  Score=63.62  Aligned_cols=153  Identities=10%  Similarity=0.014  Sum_probs=112.0

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      .|......+.+.|++++|..+|+.+. ..         ........|...+..+.+.|+++.|.++|+...+....  +.
T Consensus       101 l~~~ya~~~~~~~~~~~a~~i~~~~l-~~---------~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~--~~  168 (308)
T d2onda1         101 LYFAYADYEESRMKYEKVHSIYNRLL-AI---------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART--RH  168 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH-TS---------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC--CT
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHH-HH---------hcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--cH
Confidence            46777888889999999999999872 21         11123457888999999999999999999999877222  33


Q ss_pred             HHHHHHHH-HHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccc--hHHHHHH
Q 036589           88 IIFCNVIS-FYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLD--GLCSNLK  164 (176)
Q Consensus        88 ~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~--~~t~~~l  164 (176)
                      ..|..... -+...|+.+.|..+|+.+.+. .+.+...|..+++.+.+.|++++|..+|++........|+  ...|...
T Consensus       169 ~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~  247 (308)
T d2onda1         169 HVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF  247 (308)
T ss_dssp             HHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            33333332 234468899999999998864 2446788999999999999999999999998775432143  3467777


Q ss_pred             HHHhhcccc
Q 036589          165 IIMNDSQVR  173 (176)
Q Consensus       165 i~~~~~~g~  173 (176)
                      +.--...|+
T Consensus       248 ~~fE~~~G~  256 (308)
T d2onda1         248 LAFESNIGD  256 (308)
T ss_dssp             HHHHHHHSC
T ss_pred             HHHHHHcCC
Confidence            766555554

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.9e-06  Score=55.24  Aligned_cols=107  Identities=12%  Similarity=0.020  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHH
Q 036589           53 HYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL  132 (176)
Q Consensus        53 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~  132 (176)
                      .+....+.|.+.|++++|...|++..+. . +-+...|..+..+|...|++++|++.|+...+.. +-+...|..+..+|
T Consensus        12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~-~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~   88 (159)
T d1a17a_          12 ELKTQANDYFKAKDYENAIKFYSQAIEL-N-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN   88 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhhhcccc-c-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHH
Confidence            4555677888999999999999999987 2 4477888899999999999999999999998654 34668899999999


Q ss_pred             HhcCcHHHHHHHHHHHHhccccccchHHHHHH
Q 036589          133 LTCGKLDRMKELFISFNLKAIAVLDGLCSNLK  164 (176)
Q Consensus       133 ~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~l  164 (176)
                      ...|++++|.+.|++..+....  +...+..+
T Consensus        89 ~~~g~~~eA~~~~~~a~~~~p~--~~~~~~~l  118 (159)
T d1a17a_          89 MALGKFRAALRDYETVVKVKPH--DKDAKMKY  118 (159)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTT--CHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHcCCC--CHHHHHHH
Confidence            9999999999999999886544  34444333

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=1.1e-06  Score=62.46  Aligned_cols=141  Identities=11%  Similarity=0.007  Sum_probs=106.2

Q ss_pred             ChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhc
Q 036589           21 HPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRA  100 (176)
Q Consensus        21 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~  100 (176)
                      ..++|..+|++....          ..+.+...|...+....+.|+++.|..+|+.+.+. ........|...+..+.+.
T Consensus        79 ~~~~a~~i~~ral~~----------~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~-~~~~~~~~w~~~~~~~~~~  147 (308)
T d2onda1          79 FSDEAANIYERAIST----------LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-EDIDPTLVYIQYMKFARRA  147 (308)
T ss_dssp             HHHHHHHHHHHHHTT----------TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-SSSCTHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHH----------cCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-hcCChHHHHHHHHHHHHHc
Confidence            457788888886221          12335678888889999999999999999999876 3333455789999999999


Q ss_pred             cCHHHHHHHHHhcccCCCCccHhHHHHHHHH-HHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccccCC
Q 036589          101 RLLEHALQVFDEMPSFNVQRTVKSLNTLLNA-LLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       101 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g~~~  175 (176)
                      |+++.|.++|+...+.. +.+...|...... +...|+.+.|..+|+.+.+....  +...|...++.+.+.|+++
T Consensus       148 ~~~~~ar~i~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~--~~~~w~~y~~~~~~~g~~~  220 (308)
T d2onda1         148 EGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD--IPEYVLAYIDYLSHLNEDN  220 (308)
T ss_dssp             HCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTCCHH
T ss_pred             CChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHcCChH
Confidence            99999999999988654 2233334333332 34468999999999999886443  6888999999988888754

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=2e-06  Score=53.01  Aligned_cols=98  Identities=6%  Similarity=0.010  Sum_probs=78.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhcc---CHHHHHHHHHhcccCCCCcc-HhHHHHHHH
Q 036589           55 DLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRAR---LLEHALQVFDEMPSFNVQRT-VKSLNTLLN  130 (176)
Q Consensus        55 ~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~  130 (176)
                      ..+++.+...+++++|++.|+..... + +.+..++..+..++.+.+   ++++|+.+|++..+....|+ ..+|..+-.
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~-~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~   80 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV   80 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhh-C-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence            46888999999999999999999987 2 345667777888888755   45679999999887653343 246788889


Q ss_pred             HHHhcCcHHHHHHHHHHHHhcccc
Q 036589          131 ALLTCGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus       131 ~~~~~g~~~~a~~l~~~m~~~~~~  154 (176)
                      +|.+.|++++|.+.|++..+..+.
T Consensus        81 ~y~~~g~~~~A~~~~~~aL~~~P~  104 (122)
T d1nzna_          81 GNYRLKEYEKALKYVRGLLQTEPQ  104 (122)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHhhhHHHHHHHHHHHHhCcC
Confidence            999999999999999999886443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=6.5e-07  Score=64.09  Aligned_cols=148  Identities=9%  Similarity=-0.049  Sum_probs=107.9

Q ss_pred             CCHHHHHHHHHhcc-ChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 036589            7 TSPFRLASLLHLQK-HPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP   85 (176)
Q Consensus         7 ~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~   85 (176)
                      ..|+..-..+...| ++++|+..++.....           .+-+..+|......+.+.|++++|...++++.+.  -+-
T Consensus        78 ~a~~~r~~~l~~l~~~~~eal~~~~~al~~-----------~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~--dp~  144 (315)
T d2h6fa1          78 TVWHFRRVLLKSLQKDLHEEMNYITAIIEE-----------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQ--DAK  144 (315)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-----------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTT
T ss_pred             HHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-----------HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh--hhc
Confidence            35666677777766 488999998886222           1236788888888899999999999999998876  234


Q ss_pred             chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCc------HHHHHHHHHHHHhccccccchH
Q 036589           86 EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGK------LDRMKELFISFNLKAIAVLDGL  159 (176)
Q Consensus        86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~------~~~a~~l~~~m~~~~~~~p~~~  159 (176)
                      +...|+.+...+.+.|++++|++.|++..+.. +.+...|+.+-..+.+.+.      +++|.+.+....+..+.  +..
T Consensus       145 n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~--~~~  221 (315)
T d2h6fa1         145 NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH--NES  221 (315)
T ss_dssp             CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT--CHH
T ss_pred             chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCC--chH
Confidence            67888889999999999999999999888654 3356677766666665554      56788888877776554  566


Q ss_pred             HHHHHHHHhhc
Q 036589          160 CSNLKIIMNDS  170 (176)
Q Consensus       160 t~~~li~~~~~  170 (176)
                      .|..+-..+..
T Consensus       222 ~~~~l~~ll~~  232 (315)
T d2h6fa1         222 AWNYLKGILQD  232 (315)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHHh
Confidence            66655555543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=5.4e-06  Score=56.75  Aligned_cols=102  Identities=10%  Similarity=-0.049  Sum_probs=86.2

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHH
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLL  129 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll  129 (176)
                      ....|..+..+|.+.|++++|...|++..+..  +-+..+|+.+-.+|.+.|++++|+..|++..+.. +-+..++..+.
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg  112 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRG  112 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC--CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHH
Confidence            44577788899999999999999999999762  2356788899999999999999999999998654 23566788888


Q ss_pred             HHHHhcCcHHHHHHHHHHHHhcccc
Q 036589          130 NALLTCGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus       130 ~~~~~~g~~~~a~~l~~~m~~~~~~  154 (176)
                      ..|...|++++|.+.|+...+....
T Consensus       113 ~~~~~~g~~~~A~~~~~~al~~~p~  137 (259)
T d1xnfa_         113 IALYYGGRDKLAQDDLLAFYQDDPN  137 (259)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHhhHHHHHHHHHHHHhhccc
Confidence            9999999999999999998876543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.39  E-value=2.9e-06  Score=51.25  Aligned_cols=91  Identities=4%  Similarity=-0.076  Sum_probs=78.3

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhc
Q 036589           56 LIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTC  135 (176)
Q Consensus        56 ~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  135 (176)
                      .+...+.+.|++++|...|++..+. . +-+...|..+..++.+.|++++|+..|++..+.. +-+...|..+...|...
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~-~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQK-E-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH-S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhccc-c-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHC
Confidence            3567788999999999999999977 2 2367888999999999999999999999988654 34688899999999999


Q ss_pred             CcHHHHHHHHHHHH
Q 036589          136 GKLDRMKELFISFN  149 (176)
Q Consensus       136 g~~~~a~~l~~~m~  149 (176)
                      |++++|.+.|++.+
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999998753

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.1e-05  Score=52.38  Aligned_cols=102  Identities=8%  Similarity=-0.059  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC-------------chHHHHHHHHHHHhccCHHHHHHHHHhcccCCC
Q 036589           52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP-------------EEIIFCNVISFYGRARLLEHALQVFDEMPSFNV  118 (176)
Q Consensus        52 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~-------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  118 (176)
                      ..+......+.+.|++++|...|++........+             -..+|+.+..+|.+.|++++|+..++...+.. 
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-   92 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-   92 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-
Confidence            3455667788999999999999998875522111             13567778899999999999999999988654 


Q ss_pred             CccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589          119 QRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus       119 ~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~  154 (176)
                      +.++..|..+..+|...|++++|...|+...+..+.
T Consensus        93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~  128 (170)
T d1p5qa1          93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN  128 (170)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred             ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC
Confidence            347888999999999999999999999999886554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=3.2e-06  Score=51.44  Aligned_cols=96  Identities=8%  Similarity=-0.080  Sum_probs=80.5

Q ss_pred             HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHH
Q 036589           13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCN   92 (176)
Q Consensus        13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~   92 (176)
                      -..+.+.|++++|+..|++.. .          -.+-+...|..+..++.+.|++++|...++...+. . +.+...|..
T Consensus        10 g~~~~~~g~~~eAi~~~~~al-~----------~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-~-p~~~~~~~~   76 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAI-K----------LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL-K-PDWGKGYSR   76 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH-H----------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHH-h----------cCCcchhhhhcccccccccccccccchhhhhHHHh-c-cchhhHHHH
Confidence            456788999999999999972 2          12347889999999999999999999999999987 2 457778889


Q ss_pred             HHHHHHhccCHHHHHHHHHhcccCCCCccHh
Q 036589           93 VISFYGRARLLEHALQVFDEMPSFNVQRTVK  123 (176)
Q Consensus        93 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  123 (176)
                      +..++...|++++|+..|++..+..  |+..
T Consensus        77 ~g~~~~~~~~~~~A~~~~~~a~~~~--p~~~  105 (117)
T d1elwa_          77 KAAALEFLNRFEEAKRTYEEGLKHE--ANNP  105 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTC--TTCH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhC--CCCH
Confidence            9999999999999999999998653  5433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=3.4e-06  Score=54.07  Aligned_cols=118  Identities=8%  Similarity=-0.054  Sum_probs=88.7

Q ss_pred             HHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHH
Q 036589           12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFC   91 (176)
Q Consensus        12 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~   91 (176)
                      .-..|.+.|++++|+..|++.. ..          .+-+...|..+..+|...|++++|...|++..+..  +-+...|.
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al-~~----------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--p~~~~a~~   82 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAI-EL----------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYY   82 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH-HH----------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHhhhcc-cc----------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc--ccchHHHH
Confidence            3456789999999999999972 21          13378899999999999999999999999999762  33557889


Q ss_pred             HHHHHHHhccCHHHHHHHHHhcccCCCCcc-HhHHHHHHHH--HHhcCcHHHHHHH
Q 036589           92 NVISFYGRARLLEHALQVFDEMPSFNVQRT-VKSLNTLLNA--LLTCGKLDRMKEL  144 (176)
Q Consensus        92 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~--~~~~g~~~~a~~l  144 (176)
                      .+..+|...|++++|+..|++.....  |+ ...+..+-.+  ....+.++++...
T Consensus        83 ~~g~~~~~~g~~~eA~~~~~~a~~~~--p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          83 RRAASNMALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999988654  43 4434333322  2333445555544

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=1.6e-05  Score=54.33  Aligned_cols=129  Identities=11%  Similarity=-0.130  Sum_probs=94.0

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      .+..+-..|.+.|++++|++.|++...-           .+-++.+|+.+..++.+.|++++|...|++..+. . +-+.
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l-----------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-~-p~~~  105 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAI-----------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL-D-PTYN  105 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhcc-----------CCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH-H-hhhh
Confidence            3455667889999999999999997222           1227889999999999999999999999999986 2 2245


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL  150 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~  150 (176)
                      ..+..+..+|...|++++|+..|+...+.. +.+......+..++.+.+..+.+..+......
T Consensus       106 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (259)
T d1xnfa_         106 YAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  167 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence            578889999999999999999999887543 22333333334444555555555555444443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.30  E-value=2.2e-05  Score=49.96  Aligned_cols=112  Identities=13%  Similarity=0.004  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC---C-----------chHHHHHHHHHHHhccCHHHHHHHHHhcccCC
Q 036589           52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVI---P-----------EEIIFCNVISFYGRARLLEHALQVFDEMPSFN  117 (176)
Q Consensus        52 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~---~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  117 (176)
                      ..+..-...+.+.|++.+|...|++........   +           ...+|+.+..+|.+.|++++|++.+++..+..
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~   97 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID   97 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc
Confidence            345566778889999999999999877542111   1           13577789999999999999999999988654


Q ss_pred             CCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHH
Q 036589          118 VQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKII  166 (176)
Q Consensus       118 ~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~  166 (176)
                       +.+..+|..+..++...|++++|...|+...+..+.  +..+...+-.
T Consensus        98 -p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~--n~~~~~~l~~  143 (153)
T d2fbna1          98 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN--NLDIRNSYEL  143 (153)
T ss_dssp             -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--CHHHHHHHHH
T ss_pred             -chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHH
Confidence             457899999999999999999999999998887654  4444444433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.20  E-value=4.4e-06  Score=55.07  Aligned_cols=88  Identities=6%  Similarity=-0.212  Sum_probs=75.7

Q ss_pred             CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHH
Q 036589           85 PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLK  164 (176)
Q Consensus        85 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~l  164 (176)
                      |+...+...-..|.+.|++++|+..|++..+.. +-+...|+.+-.+|.+.|++++|+..|....+..+.  +..+|..+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~--~~~a~~~l   78 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--SVKAHFFL   78 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT--CHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC--cHHHHHHH
Confidence            566667778889999999999999999887654 457888999999999999999999999999876554  68889999


Q ss_pred             HHHhhccccCC
Q 036589          165 IIMNDSQVRVT  175 (176)
Q Consensus       165 i~~~~~~g~~~  175 (176)
                      -.+|.+.|+++
T Consensus        79 g~~~~~l~~~~   89 (201)
T d2c2la1          79 GQCQLEMESYD   89 (201)
T ss_dssp             HHHHHHTTCHH
T ss_pred             HHHHHHCCCHH
Confidence            99999998865

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.19  E-value=4.4e-06  Score=50.42  Aligned_cols=93  Identities=6%  Similarity=-0.107  Sum_probs=77.7

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      .+..+-..+.+.|++++|+..|++....           .+-++..|..+..++.+.|++++|...|++..+. . +-+.
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~-----------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-~-p~~~   84 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQK-----------EPEREEAWRSLGLTQAENEKDGLAIIALNHARML-D-PKDI   84 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhccc-----------ccccchhhhhhhhhhhhhhhHHHhhccccccccc-c-cccc
Confidence            4445667788899999999999997322           1236889999999999999999999999999876 2 3457


Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHhc
Q 036589           88 IIFCNVISFYGRARLLEHALQVFDEM  113 (176)
Q Consensus        88 ~~~~~li~~~~~~g~~~~a~~~~~~m  113 (176)
                      ..|..+...|...|++++|++.|++.
T Consensus        85 ~a~~~la~~y~~~g~~~~A~~~l~~~  110 (112)
T d1hxia_          85 AVHAALAVSHTNEHNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHCCCHHHHHHHHHHH
Confidence            78888999999999999999999875

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.16  E-value=5.6e-05  Score=49.38  Aligned_cols=111  Identities=7%  Similarity=-0.022  Sum_probs=86.9

Q ss_pred             cHHHHHHHH---HHHHhcCChHHHHHHHHHHhhcC-C-CCCch------------------HHHHHHHHHHHhccCHHHH
Q 036589           50 NLLHYDLII---TKLGRAKMFDEMQQILHQLKHDT-R-VIPEE------------------IIFCNVISFYGRARLLEHA  106 (176)
Q Consensus        50 ~~~~y~~li---~~~~~~g~~~~a~~~~~~m~~~~-g-~~~~~------------------~~~~~li~~~~~~g~~~~a  106 (176)
                      |...|....   ......|++++|...|.+..... | +-++.                  ..+..+..++.+.|++++|
T Consensus         7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A   86 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV   86 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence            555554444   56778999999999999987642 1 11111                  3566788999999999999


Q ss_pred             HHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHH-----hccccccchHHHH
Q 036589          107 LQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN-----LKAIAVLDGLCSN  162 (176)
Q Consensus       107 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~-----~~~~~~p~~~t~~  162 (176)
                      +..++...+.. +-+...|..++.+|.+.|+.++|++.|+++.     +.|+. |...+-.
T Consensus        87 l~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~-P~~~l~~  145 (179)
T d2ff4a2          87 IAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID-PGPTLRA  145 (179)
T ss_dssp             HHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC-CCHHHHH
T ss_pred             HHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-cCHHHHH
Confidence            99999998654 4588999999999999999999999999974     46998 9876633

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=3.9e-05  Score=50.62  Aligned_cols=117  Identities=9%  Similarity=-0.034  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHH
Q 036589           52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNA  131 (176)
Q Consensus        52 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~  131 (176)
                      ..|+. ...+...|+++.|.+.|.++.     .|+..+|..+-.+|.+.|++++|++.|++..+.. +-+...|+.+-.+
T Consensus         7 ~l~~~-g~~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~   79 (192)
T d1hh8a_           7 SLWNE-GVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGML   79 (192)
T ss_dssp             HHHHH-HHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHH-HHHHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHH
Confidence            34554 566678999999999998643     3567788889999999999999999999998655 4467889999999


Q ss_pred             HHhcCcHHHHHHHHHHHHhccccc-------------c-chHHHHHHHHHhhccccCC
Q 036589          132 LLTCGKLDRMKELFISFNLKAIAV-------------L-DGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       132 ~~~~g~~~~a~~l~~~m~~~~~~~-------------p-~~~t~~~li~~~~~~g~~~  175 (176)
                      +.+.|++++|.+.|++..+.....             + ...++..+-.+|.+.|+++
T Consensus        80 ~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~  137 (192)
T d1hh8a_          80 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWK  137 (192)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHH
T ss_pred             HHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHH
Confidence            999999999999999876431110             1 1244555666677766653

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=2.2e-05  Score=48.32  Aligned_cols=101  Identities=11%  Similarity=0.040  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCC-cc-----HhHH
Q 036589           52 LHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQ-RT-----VKSL  125 (176)
Q Consensus        52 ~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~-----~~~~  125 (176)
                      ..+-.+...+.+.|++++|...|++..+. . +-+...+..+-.+|.+.|++++|+..|++..+..-. +.     ..+|
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~-~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~   82 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKEL-D-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            34556788899999999999999999987 2 346788899999999999999999999997742200 11     2467


Q ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589          126 NTLLNALLTCGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus       126 ~~ll~~~~~~g~~~~a~~l~~~m~~~~~~  154 (176)
                      ..+-..+...+++++|.+.|..-......
T Consensus        83 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence            77778888999999999999887664333

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.13  E-value=7.7e-05  Score=47.97  Aligned_cols=112  Identities=8%  Similarity=-0.056  Sum_probs=85.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHhhc-------------CCCC-CchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCC
Q 036589           54 YDLIITKLGRAKMFDEMQQILHQLKHD-------------TRVI-PEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQ  119 (176)
Q Consensus        54 y~~li~~~~~~g~~~~a~~~~~~m~~~-------------~g~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  119 (176)
                      +......+.+.|++++|...|++..+.             ..+. .....|+.+..+|.+.|++++|+..|++..+.. +
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p  108 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P  108 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-h
Confidence            445566777889999999988876532             0011 244567778899999999999999999998765 4


Q ss_pred             ccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHh
Q 036589          120 RTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMN  168 (176)
Q Consensus       120 p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~  168 (176)
                      -+...|..+-.+|.+.|++++|.+.|+...+....  +......+-.+.
T Consensus       109 ~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~--n~~~~~~l~~~~  155 (169)
T d1ihga1         109 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE--DKAIQAELLKVK  155 (169)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred             hhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Confidence            57788999999999999999999999999886554  555555554443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=5.7e-06  Score=50.84  Aligned_cols=100  Identities=11%  Similarity=-0.089  Sum_probs=79.4

Q ss_pred             HHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCC---hHHHHHHHHHHhhcCCCCCc
Q 036589           10 FRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKM---FDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus        10 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~---~~~a~~~~~~m~~~~g~~~~   86 (176)
                      ..+++.+...+++++|.+.|+.....           -+.++.++..+..++.+.++   +++|..+|+++.+. ...|+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~-----------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~-~~~~~   70 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAA-----------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-GSKEE   70 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-----------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-SCHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhh-----------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc-cCCch
Confidence            56889999999999999999997222           23477888889999987554   55799999999876 44444


Q ss_pred             h-HHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHh
Q 036589           87 E-IIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVK  123 (176)
Q Consensus        87 ~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  123 (176)
                      . .++..+-.+|.+.|++++|++.|++..+..  |+-.
T Consensus        71 ~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~--P~~~  106 (122)
T d1nzna_          71 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE--PQNN  106 (122)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhC--cCCH
Confidence            3 467789999999999999999999998643  6544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.05  E-value=0.00011  Score=47.25  Aligned_cols=111  Identities=12%  Similarity=-0.047  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC-------------chHHHHHHHHHHHhccCHHHHHHHHHhcccCC
Q 036589           51 LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP-------------EEIIFCNVISFYGRARLLEHALQVFDEMPSFN  117 (176)
Q Consensus        51 ~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~-------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  117 (176)
                      ...+......+.+.|++.+|...|++........+             ...+|+.+..+|.+.|++++|+..+++..+..
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            34566677888999999999999988664311111             22456678889999999999999999988654


Q ss_pred             CCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHH
Q 036589          118 VQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLK  164 (176)
Q Consensus       118 ~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~l  164 (176)
                       +.+..+|..+..++...|++++|.+.|....+..+.  +......+
T Consensus        95 -p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~--n~~~~~~l  138 (168)
T d1kt1a1          95 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ--NKAARLQI  138 (168)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--CHHHHHHH
T ss_pred             -cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHH
Confidence             567888999999999999999999999999876543  44444443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.97  E-value=2.6e-05  Score=54.67  Aligned_cols=139  Identities=8%  Similarity=-0.062  Sum_probs=98.7

Q ss_pred             HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC---C-CC
Q 036589            9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT---R-VI   84 (176)
Q Consensus         9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~---g-~~   84 (176)
                      |...-..|...+++++|.+.|++...-..     ..........+|..+..+|.+.|++++|...+++..+-.   | ..
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~-----~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~  114 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQK-----KAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFR  114 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHH-----HcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccch
Confidence            56667888889999999999988621100     001111234689999999999999999999998766431   1 22


Q ss_pred             CchHHHHHHHHHHHh-ccCHHHHHHHHHhccc----CCCCc-cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q 036589           85 PEEIIFCNVISFYGR-ARLLEHALQVFDEMPS----FNVQR-TVKSLNTLLNALLTCGKLDRMKELFISFNLKA  152 (176)
Q Consensus        85 ~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~----~~~~p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~  152 (176)
                      ....++..+...|.. .|++++|++.|++..+    .+..+ -..++..+...+...|++++|.+.|++.....
T Consensus       115 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~  188 (290)
T d1qqea_         115 RGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS  188 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhC
Confidence            234556667777744 6999999999987653    22112 24567888999999999999999999987643

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.91  E-value=7.3e-05  Score=48.84  Aligned_cols=107  Identities=11%  Similarity=0.037  Sum_probs=80.4

Q ss_pred             HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCC--------------cHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 036589           13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRY--------------NLLHYDLIITKLGRAKMFDEMQQILHQLK   78 (176)
Q Consensus        13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~y~~li~~~~~~g~~~~a~~~~~~m~   78 (176)
                      -......|++++|.+.|.....-..   ++...++..              -...+..+..++.+.|++++|...++...
T Consensus        18 g~~~~~~g~~e~A~~~~~~AL~l~r---G~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al   94 (179)
T d2ff4a2          18 GVHAAAAGRFEQASRHLSAALREWR---GPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALT   94 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCC---SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCc---ccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence            3566778999999988888522110   011111111              12457788899999999999999999999


Q ss_pred             hcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcc-----cCCCCccHhH
Q 036589           79 HDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMP-----SFNVQRTVKS  124 (176)
Q Consensus        79 ~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~  124 (176)
                      +.  -.-+...|..++.+|.+.|+..+|++.|+++.     +.|+.|+..+
T Consensus        95 ~~--~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          95 FE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             Hh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            87  34688899999999999999999999999874     4788998764

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.89  E-value=2.7e-05  Score=54.17  Aligned_cols=124  Identities=12%  Similarity=0.001  Sum_probs=85.5

Q ss_pred             HHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCch-HHHHHHH
Q 036589           16 LHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEE-IIFCNVI   94 (176)
Q Consensus        16 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~-~~~~~li   94 (176)
                      ..+.|++++|+..+++..+.           .+-+...+..+...++..|++++|.+.|+...+.   .|+. ..+..+.
T Consensus         6 aL~~G~l~eAl~~l~~al~~-----------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~   71 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKA-----------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLR   71 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHT-----------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHH
Confidence            45689999999999997333           2348899999999999999999999999999876   3443 3344444


Q ss_pred             HHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q 036589           95 SFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI  153 (176)
Q Consensus        95 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~  153 (176)
                      ..+...+..+++......-...+-.++...+......+.+.|+.++|.+++.+..+...
T Consensus        72 ~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p  130 (264)
T d1zbpa1          72 HLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ  130 (264)
T ss_dssp             HHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence            44444444444433333222222233444455556778889999999999999876543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=0.00023  Score=45.77  Aligned_cols=112  Identities=11%  Similarity=-0.078  Sum_probs=79.8

Q ss_pred             HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCC---------cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 036589           13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRY---------NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRV   83 (176)
Q Consensus        13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~   83 (176)
                      -..+.+.|++++|+..|++.. ...    +.......         -..+|+.+..+|.+.|++++|...++...+. . 
T Consensus        20 G~~~~~~~~~~~Ai~~y~~al-~~~----~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~-~-   92 (170)
T d1p5qa1          20 GTVYFKEGKYKQALLQYKKIV-SWL----EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-D-   92 (170)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHH-HHT----TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-
T ss_pred             HHHHHHcCCHHHHHHHHHHHH-HHh----hhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc-c-
Confidence            346788999999999997651 110    00011111         1345777888999999999999999999976 2 


Q ss_pred             CCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCc-cHhHHHHHHHHHH
Q 036589           84 IPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR-TVKSLNTLLNALL  133 (176)
Q Consensus        84 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~  133 (176)
                      +-+...+..+..+|...|++++|+..|++..+..  | |......+-...-
T Consensus        93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--P~n~~~~~~l~~~~~  141 (170)
T d1p5qa1          93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQ  141 (170)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence            2377888889999999999999999999998653  4 4444444434333

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.76  E-value=0.00049  Score=43.43  Aligned_cols=100  Identities=13%  Similarity=0.122  Sum_probs=75.0

Q ss_pred             HHHHHHH--HHHHHhcCChHHHHHHHHHHhhcCCCCC----------chHHHHHHHHHHHhccCHHHHHHHHHhcccC--
Q 036589           51 LLHYDLI--ITKLGRAKMFDEMQQILHQLKHDTRVIP----------EEIIFCNVISFYGRARLLEHALQVFDEMPSF--  116 (176)
Q Consensus        51 ~~~y~~l--i~~~~~~g~~~~a~~~~~~m~~~~g~~~----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--  116 (176)
                      ..+|..+  ...+...|++++|...|++..+-..-.|          ....|+.+-.+|.+.|++++|++.+++..+.  
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            4566666  4555678999999999999886422222          2467889999999999999999988876531  


Q ss_pred             ---CCCcc-----HhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589          117 ---NVQRT-----VKSLNTLLNALLTCGKLDRMKELFISFNL  150 (176)
Q Consensus       117 ---~~~p~-----~~~~~~ll~~~~~~g~~~~a~~l~~~m~~  150 (176)
                         ...++     ...++.+-.+|...|++++|.+.|++..+
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence               11121     23567788999999999999999999764

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=5.8e-05  Score=46.37  Aligned_cols=63  Identities=10%  Similarity=0.073  Sum_probs=53.8

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccc
Q 036589           90 FCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAI  153 (176)
Q Consensus        90 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~  153 (176)
                      +-.+-..|.+.|++++|+..|++..+.. +.+..+|..+-.+|.+.|++++|++.++..++...
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~   69 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR   69 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCc
Confidence            4456678899999999999999998764 44788899999999999999999999999886543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=0.00059  Score=47.52  Aligned_cols=131  Identities=11%  Similarity=-0.023  Sum_probs=92.3

Q ss_pred             HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCC--cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC---C-CCCc
Q 036589           13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRY--NLLHYDLIITKLGRAKMFDEMQQILHQLKHDT---R-VIPE   86 (176)
Q Consensus        13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~---g-~~~~   86 (176)
                      -..+...|++++|+++|++.....        +...+  ....+..+..++...|++++|...|++..+..   + ....
T Consensus        19 A~~~~~~g~~~~A~~~~~~aL~~~--------~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   90 (366)
T d1hz4a_          19 AQVAINDGNPDEAERLAKLALEEL--------PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA   90 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTC--------CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhC--------cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHH
Confidence            456778999999999999862221        11111  23467788899999999999999999877531   1 1122


Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHhccc----CCCC--c-cHhHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 036589           87 EIIFCNVISFYGRARLLEHALQVFDEMPS----FNVQ--R-TVKSLNTLLNALLTCGKLDRMKELFISFNLK  151 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~--p-~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~  151 (176)
                      ...+..+...+...|++..+...+.+...    .+..  + ....+..+-..+...|+++.+...+......
T Consensus        91 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~  162 (366)
T d1hz4a_          91 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV  162 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence            34556677888999999999988876542    1111  1 2235556678888999999999999887653

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.63  E-value=0.00037  Score=44.56  Aligned_cols=119  Identities=6%  Similarity=-0.054  Sum_probs=80.0

Q ss_pred             HHHHHHHhccChhHHHHhhcCCCCCC---CCCCC-CCCCCC-CCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 036589           11 RLASLLHLQKHPKLALQLFKNPNPNA---NDTEA-PPLKPF-RYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP   85 (176)
Q Consensus        11 ~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~-~~~~~~-~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~   85 (176)
                      ..-..+.+.|++.+|++.|++...-.   ..... ...... +.....|..+..++.+.|++++|...+++..+. . +-
T Consensus        32 ~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~-~-p~  109 (169)
T d1ihga1          32 NIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI-D-PS  109 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C-TT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh-h-hh
Confidence            34556778899999988886641100   00000 000001 124556777889999999999999999999976 2 34


Q ss_pred             chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHH
Q 036589           86 EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNAL  132 (176)
Q Consensus        86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~  132 (176)
                      +...|..+..+|.+.|++++|++.|+...+.. +.+......+....
T Consensus       110 ~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~  155 (169)
T d1ihga1         110 NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVK  155 (169)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            66788889999999999999999999988653 22444444444433

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.59  E-value=0.00092  Score=47.20  Aligned_cols=141  Identities=7%  Similarity=-0.084  Sum_probs=99.6

Q ss_pred             ccChhHHHHhhcCCCCCCCCCCCCCCCCCCC-cHHHHHHHH---HHH-------HhcCChHHHHHHHHHHhhcCCCCCch
Q 036589           19 QKHPKLALQLFKNPNPNANDTEAPPLKPFRY-NLLHYDLII---TKL-------GRAKMFDEMQQILHQLKHDTRVIPEE   87 (176)
Q Consensus        19 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~y~~li---~~~-------~~~g~~~~a~~~~~~m~~~~g~~~~~   87 (176)
                      ....++|+++++.....            .| +...|+..-   ..+       ...|++++|..+++...+.  .+-+.
T Consensus        42 ~~~~~~al~~~~~~l~~------------~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~--~pk~~  107 (334)
T d1dcea1          42 GELDESVLELTSQILGA------------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSY  107 (334)
T ss_dssp             TCCSHHHHHHHHHHHHH------------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred             ccccHHHHHHHHHHHHH------------CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh--CCCcH
Confidence            34457999999987221            12 334443332   222       2345578899999998876  23455


Q ss_pred             HHHHHHHHHHHhccC--HHHHHHHHHhcccCCCCccHhHHHHHH-HHHHhcCcHHHHHHHHHHHHhccccccchHHHHHH
Q 036589           88 IIFCNVISFYGRARL--LEHALQVFDEMPSFNVQRTVKSLNTLL-NALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLK  164 (176)
Q Consensus        88 ~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~l  164 (176)
                      ..|..+..++...+.  +++|+..+++..+.. +++...+...+ ..+...+.+++|+..++...+..+.  +...|..+
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~--~~~a~~~l  184 (334)
T d1dcea1         108 GTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS--NYSSWHYR  184 (334)
T ss_dssp             HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC--CHHHHHHH
T ss_pred             HHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC--CHHHHHHH
Confidence            667777777777664  899999999988643 34566655444 6677789999999999999888776  78889999


Q ss_pred             HHHhhccccCCC
Q 036589          165 IIMNDSQVRVTG  176 (176)
Q Consensus       165 i~~~~~~g~~~~  176 (176)
                      -..+.+.|++++
T Consensus       185 ~~~~~~~~~~~~  196 (334)
T d1dcea1         185 SCLLPQLHPQPD  196 (334)
T ss_dssp             HHHHHHHSCCCC
T ss_pred             HHHHHHhcCHHH
Confidence            888888888753

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.59  E-value=0.00024  Score=49.55  Aligned_cols=140  Identities=6%  Similarity=-0.072  Sum_probs=95.0

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHH-hcCChHHHHHHHHHHhhc---CCC
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLG-RAKMFDEMQQILHQLKHD---TRV   83 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~-~~g~~~~a~~~~~~m~~~---~g~   83 (176)
                      +|+.+-..|.+.|++++|++.++....-..     ...........+..+...|- ..|++++|...|++..+-   .+-
T Consensus        79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~  153 (290)
T d1qqea_          79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFT-----HRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS  153 (290)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHhhHHhh-----hcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            577778889999999999999886511000     00122223456666777774 469999999999887643   121


Q ss_pred             CC-chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCc-----cH-hHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q 036589           84 IP-EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQR-----TV-KSLNTLLNALLTCGKLDRMKELFISFNLKA  152 (176)
Q Consensus        84 ~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-----~~-~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~  152 (176)
                      .+ -..++..+...|.+.|++++|+..|++........     +. ..+...+..+...|+++.|...|.+..+..
T Consensus       154 ~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~  229 (290)
T d1qqea_         154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED  229 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred             hhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            11 23567889999999999999999999876432111     11 123445556678899999999999987654

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.55  E-value=0.0015  Score=41.61  Aligned_cols=129  Identities=6%  Similarity=-0.084  Sum_probs=86.4

Q ss_pred             HHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCC---------cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 036589           12 LASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRY---------NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR   82 (176)
Q Consensus        12 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g   82 (176)
                      .-..+.+.|++.+|+..|+....--.     ......+         ....|+.+..+|.+.|++++|...++...+.  
T Consensus        21 ~G~~~~~~~~~~~A~~~Y~~al~~~~-----~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l--   93 (168)
T d1kt1a1          21 KGTVYFKGGKYVQAVIQYGKIVSWLE-----MEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL--   93 (168)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHT-----TCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHH-----HhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc--
Confidence            34567889999999999876411100     0011111         1234666778889999999999999999976  


Q ss_pred             CCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHH-HHHHHHHHH
Q 036589           83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLD-RMKELFISF  148 (176)
Q Consensus        83 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~-~a~~l~~~m  148 (176)
                      -+.+...|..+..+|...|++++|+..|+...+.. +.+......+-....+.+... ...++|..|
T Consensus        94 ~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~  159 (168)
T d1kt1a1          94 DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAKEHNERDRRTYANM  159 (168)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            24577788889999999999999999999998654 234444444444444444333 344555444

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=0.0019  Score=44.78  Aligned_cols=160  Identities=9%  Similarity=-0.087  Sum_probs=107.9

Q ss_pred             HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC---CCCC
Q 036589            9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT---RVIP   85 (176)
Q Consensus         9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~---g~~~   85 (176)
                      +..+-..+...|+++.|...+........      ..+.......+......+...+++..+...+.+.....   +..+
T Consensus       136 ~~~la~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~  209 (366)
T d1hz4a_         136 VRIRAQLLWAWARLDEAEASARSGIEVLS------SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS  209 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHTT------TSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCH
T ss_pred             HHHHHHHHHHhcchhhhHHHHHHHHHHhh------hhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccC
Confidence            33455677888999999888877521110      12333456677777788888899988888777655431   1111


Q ss_pred             --chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCC---ccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh----cccccc
Q 036589           86 --EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQ---RTVKSLNTLLNALLTCGKLDRMKELFISFNL----KAIAVL  156 (176)
Q Consensus        86 --~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~----~~~~~p  156 (176)
                        ....+..+...+...|++++|...++........   .....+..+...+...|++++|.+.++....    .+.. |
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~  288 (366)
T d1hz4a_         210 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLM-S  288 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-H
T ss_pred             chHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccC-h
Confidence              2234566677888899999999999887653322   2234556677888999999999999988753    2333 3


Q ss_pred             -chHHHHHHHHHhhccccCC
Q 036589          157 -DGLCSNLKIIMNDSQVRVT  175 (176)
Q Consensus       157 -~~~t~~~li~~~~~~g~~~  175 (176)
                       ...++..+-..|.+.|+++
T Consensus       289 ~~~~~~~~la~~~~~~g~~~  308 (366)
T d1hz4a_         289 DLNRNLLLLNQLYWQAGRKS  308 (366)
T ss_dssp             HHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHCCCHH
Confidence             3556777788888888764

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.46  E-value=0.001  Score=41.76  Aligned_cols=98  Identities=9%  Similarity=-0.053  Sum_probs=74.3

Q ss_pred             HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCC----------cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Q 036589           13 ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRY----------NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTR   82 (176)
Q Consensus        13 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g   82 (176)
                      -..+.+.|++.+|+..|++...--.     .......          ....|+.+..+|.+.|++++|.+.++...+.  
T Consensus        24 G~~~f~~~~y~~A~~~Y~~al~~~~-----~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~--   96 (153)
T d2fbna1          24 GNEFFKKNEINEAIVKYKEALDFFI-----HTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI--   96 (153)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTTT-----TCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCc-----chhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc--
Confidence            3567789999999999887421100     0011111          1346778899999999999999999999876  


Q ss_pred             CCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCC
Q 036589           83 VIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFN  117 (176)
Q Consensus        83 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  117 (176)
                      -+.+...|..+..+|...|++++|+..|++..+..
T Consensus        97 ~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~  131 (153)
T d2fbna1          97 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN  131 (153)
T ss_dssp             STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            24567899999999999999999999999988654

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.40  E-value=0.0056  Score=43.64  Aligned_cols=114  Identities=10%  Similarity=0.104  Sum_probs=48.2

Q ss_pred             CCCCCCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-
Q 036589            2 NKAKPTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD-   80 (176)
Q Consensus         2 ~~p~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~-   80 (176)
                      +.||..-...+.+.|.+.|.++.|..+|..+ .+                  |..++..+.+.+++..|.+........ 
T Consensus        10 ~~~n~~d~~~i~~~c~~~~lye~A~~lY~~~-~d------------------~~rl~~~~v~l~~~~~avd~~~k~~~~~   70 (336)
T d1b89a_          10 NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-SN------------------FGRLASTLVHLGEYQAAVDGARKANSTR   70 (336)
T ss_dssp             TCC----------------CTTTHHHHHHHT-TC------------------HHHHHHHHHTTTCHHHHHHHHHHHTCHH
T ss_pred             cCCCcCCHHHHHHHHHHCCCHHHHHHHHHhC-CC------------------HHHHHHHHHhhccHHHHHHHHHHcCCHH
Confidence            4455555566666666777777777777666 22                  334555555555555555544322100 


Q ss_pred             ----------------------CCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhc
Q 036589           81 ----------------------TRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTC  135 (176)
Q Consensus        81 ----------------------~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  135 (176)
                                            .....+......++..|-..|.+++...+++..... -..+...++-++..|++.
T Consensus        71 ~~k~~~~~l~~~~e~~la~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~  146 (336)
T d1b89a_          71 TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF  146 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence                                  012223333344555555555555555555544321 123444555555555554

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.29  E-value=0.00012  Score=52.05  Aligned_cols=145  Identities=8%  Similarity=-0.127  Sum_probs=96.2

Q ss_pred             CHHHH-HHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHH--------------
Q 036589            8 SPFRL-ASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQ--------------   72 (176)
Q Consensus         8 ~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~--------------   72 (176)
                      .+... -..+...+++++|+..++......           +-+...|+.+...+.+.|++++|..              
T Consensus       145 ~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-----------p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  213 (334)
T d1dcea1         145 CWDYRRFVAAQAAVAPAEELAFTDSLITRN-----------FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELE  213 (334)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-----------CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHH
T ss_pred             hhhhHHHHHHHhccccHHHHHHHHHHHHcC-----------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHH
Confidence            34433 356667899999999999883321           3367788888888888776654322              


Q ss_pred             ----------------HHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcC
Q 036589           73 ----------------ILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCG  136 (176)
Q Consensus        73 ----------------~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g  136 (176)
                                      .+......  -.++...+..+...+...|+.++|...|.+..... +-+...+..+...+...|
T Consensus       214 ~~~~~~~l~~~~~a~~~~~~~l~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~  290 (334)
T d1dcea1         214 LVQNAFFTDPNDQSAWFYHRWLLG--RAEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLL  290 (334)
T ss_dssp             HHHHHHHHCSSCSHHHHHHHHHHS--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGG
T ss_pred             HHHHHHHhcchhHHHHHHHHHHHh--CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCC
Confidence                            11111111  11122233345667777899999999999888544 235667778888999999


Q ss_pred             cHHHHHHHHHHHHhccccccchHHHHHHHHHh
Q 036589          137 KLDRMKELFISFNLKAIAVLDGLCSNLKIIMN  168 (176)
Q Consensus       137 ~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~  168 (176)
                      ++++|.+.|+...+..+.  +..-|+.|...+
T Consensus       291 ~~~eA~~~~~~ai~ldP~--~~~y~~~L~~~~  320 (334)
T d1dcea1         291 YEKETLQYFSTLKAVDPM--RAAYLDDLRSKF  320 (334)
T ss_dssp             GHHHHHHHHHHHHHHCGG--GHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCcc--cHHHHHHHHHHH
Confidence            999999999999876443  455666664444

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=0.0039  Score=35.64  Aligned_cols=29  Identities=24%  Similarity=0.141  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q 036589          124 SLNTLLNALLTCGKLDRMKELFISFNLKA  152 (176)
Q Consensus       124 ~~~~ll~~~~~~g~~~~a~~l~~~m~~~~  152 (176)
                      +++.+-.++.+.|++++|.+.+++..+..
T Consensus        48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_          48 VLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            34444555555555555555555544443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.15  E-value=0.00019  Score=45.46  Aligned_cols=107  Identities=9%  Similarity=-0.013  Sum_probs=70.4

Q ss_pred             CHHHH--HHHHHhccChhHHHHhhcCCCCCC-CCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC---
Q 036589            8 SPFRL--ASLLHLQKHPKLALQLFKNPNPNA-NDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDT---   81 (176)
Q Consensus         8 ~~~~l--~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~---   81 (176)
                      +|..+  ...+.+.|++++|++.|++...-. .................|+.+..+|.+.|++++|...+++..+..   
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            34444  445667799999999988862110 000000000000124678999999999999999999888876431   


Q ss_pred             -CCCCc-----hHHHHHHHHHHHhccCHHHHHHHHHhcc
Q 036589           82 -RVIPE-----EIIFCNVISFYGRARLLEHALQVFDEMP  114 (176)
Q Consensus        82 -g~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~  114 (176)
                       ...++     ...++.+-.+|...|++++|+..|++..
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence             11221     2356778899999999999999998865

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.0058  Score=34.88  Aligned_cols=68  Identities=6%  Similarity=-0.117  Sum_probs=54.0

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC----CCCC-chHHHHHHHHHHHhccCHHHHHHHHHhcccCC
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDT----RVIP-EEIIFCNVISFYGRARLLEHALQVFDEMPSFN  117 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~----g~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  117 (176)
                      +...+-.+...+.+.|++++|...|++..+..    ...+ ...+++.|-.+|.+.|++++|+..|++..+..
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            34555578899999999999999999876541    1122 24678889999999999999999999998654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.0032  Score=47.23  Aligned_cols=136  Identities=7%  Similarity=-0.167  Sum_probs=76.9

Q ss_pred             ccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHH
Q 036589           19 QKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYG   98 (176)
Q Consensus        19 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~   98 (176)
                      .+.++.|++.+... ..          --.++...+..+...+.+.|+.++|...++.....   .+ ..++..+-..+.
T Consensus        99 ~~~Y~~ai~~l~~~-~~----------l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~  163 (497)
T d1ya0a1          99 SGFYTQLLQELCTV-FN----------VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIAR  163 (497)
T ss_dssp             HHHHHHHHHHHTC------------------------------------------CCHHHHH---HH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HC----------CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHH
Confidence            35556666665554 11          11234556666777777778888877766655433   11 246667888888


Q ss_pred             hccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhccccccchHHHHHHHHHhhccc
Q 036589           99 RARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIAVLDGLCSNLKIIMNDSQV  172 (176)
Q Consensus        99 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~~~g  172 (176)
                      ..|++++|+..|++..+.. +-+..+|+.|-..+...|+..+|...|.+-.....  |-..++..|...+.+..
T Consensus       164 ~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~--~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         164 YRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF--PFPAASTNLQKALSKAL  234 (497)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB--CCHHHHHHHHHHHHHHT
T ss_pred             HcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHHhh
Confidence            9999999999999887553 33567899999999999999999999988877655  57777888877776543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.91  E-value=0.0018  Score=40.32  Aligned_cols=116  Identities=10%  Similarity=-0.063  Sum_probs=76.8

Q ss_pred             HHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhc----------CChHHHHHHHHHHhhcCCCCC
Q 036589           16 LHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRA----------KMFDEMQQILHQLKHDTRVIP   85 (176)
Q Consensus        16 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~----------g~~~~a~~~~~~m~~~~g~~~   85 (176)
                      |-+.+.+++|.+.|+.. -..          -+.+...|..+..++...          +.+++|...|++..+. . +-
T Consensus         7 ~~r~~~fe~A~~~~e~a-l~~----------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l-~-P~   73 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENT-YKS----------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-D-PK   73 (145)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHH----------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-C-TT
T ss_pred             HHHHccHHHHHHHHHHH-Hhh----------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh-c-ch
Confidence            56677899999999997 221          133777888888777754          4457788888888865 2 23


Q ss_pred             chHHHHHHHHHHHhccC-----------HHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcc
Q 036589           86 EEIIFCNVISFYGRARL-----------LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKA  152 (176)
Q Consensus        86 ~~~~~~~li~~~~~~g~-----------~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~  152 (176)
                      +..+|..+-.+|...|+           +++|.+.|++..+.  .|+-..|..-|..+.      +|.+++.+..+.|
T Consensus        74 ~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~~------ka~~~~~e~~k~~  143 (145)
T d1zu2a1          74 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMTA------KAPQLHAEAYKQG  143 (145)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH------THHHHHHHHHHSS
T ss_pred             hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHHH------HHHHHHHHHHHHh
Confidence            45677778777776553           57777888777654  366665555554443      4566666655544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.84  E-value=0.00042  Score=47.95  Aligned_cols=68  Identities=7%  Similarity=-0.027  Sum_probs=52.7

Q ss_pred             HhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccH-hHHHHHHHHHH
Q 036589           62 GRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV-KSLNTLLNALL  133 (176)
Q Consensus        62 ~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~  133 (176)
                      .+.|++++|...+++..+.  -+-|...+..+...|+..|++++|.+.|+...+..  |+. ..+..+...+.
T Consensus         7 L~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~   75 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVK   75 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence            4679999999999999987  34577888999999999999999999999988653  543 33444434443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.83  E-value=0.0045  Score=38.39  Aligned_cols=103  Identities=12%  Similarity=0.108  Sum_probs=71.9

Q ss_pred             HHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhc----------cCHHHHHHHHHhcccCCCCccHhHHHHHHH
Q 036589           61 LGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRA----------RLLEHALQVFDEMPSFNVQRTVKSLNTLLN  130 (176)
Q Consensus        61 ~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~  130 (176)
                      |-+.+.+++|...|+...+..  +-+...+..+-.+|...          +.+++|+..|++..+.. +-+..+|+.+-.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~   83 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGN   83 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHH
Confidence            456678999999999999772  33445666666666643          45688999999988654 346678888888


Q ss_pred             HHHhcC-----------cHHHHHHHHHHHHhccccccchHHHHHHHHHhh
Q 036589          131 ALLTCG-----------KLDRMKELFISFNLKAIAVLDGLCSNLKIIMND  169 (176)
Q Consensus       131 ~~~~~g-----------~~~~a~~l~~~m~~~~~~~p~~~t~~~li~~~~  169 (176)
                      +|...|           .+++|.+.|+...+.  . |+...|..-+..+.
T Consensus        84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~-P~~~~~~~~L~~~~  130 (145)
T d1zu2a1          84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--Q-PDNTHYLKSLEMTA  130 (145)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--C-TTCHHHHHHHHHHH
T ss_pred             HHHHcccchhhHHHHHHhHHHhhhhhhccccc--C-CCHHHHHHHHHHHH
Confidence            887654           367888888887764  3 66666655554443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.0041  Score=46.57  Aligned_cols=111  Identities=7%  Similarity=-0.060  Sum_probs=64.3

Q ss_pred             CCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCc-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC
Q 036589            7 TSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYN-LLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP   85 (176)
Q Consensus         7 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~   85 (176)
                      ..+..+-..+.+.|+.++|...++.. .             .++ ...+..+...+...|++++|...|++..+.  -+-
T Consensus       121 ~~~~~lg~~~~~~~~~~~A~~~~~~a-l-------------~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~  184 (497)
T d1ya0a1         121 VKSSQLGIISNKQTHTSAIVKPQSSS-C-------------SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPS  184 (497)
T ss_dssp             ----------------------CCHH-H-------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred             HHHHHhHHHHHhCCCHHHHHHHHHHH-h-------------CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCC
Confidence            34444555555666666666655543 1             111 245677888888999999999999998876  234


Q ss_pred             chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHh
Q 036589           86 EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLT  134 (176)
Q Consensus        86 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  134 (176)
                      +...|+.|-..|...|+..+|+..|.+..... .|-..+++.|...|.+
T Consensus       185 ~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         185 NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK  232 (497)
T ss_dssp             BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence            55789999999999999999999888776544 4555666666655554

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.09  E-value=0.061  Score=32.51  Aligned_cols=125  Identities=14%  Similarity=0.055  Sum_probs=95.1

Q ss_pred             HHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCC----------
Q 036589           16 LHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIP----------   85 (176)
Q Consensus        16 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~----------   85 (176)
                      +...|.+++..+++.+..+..             +..-||.+|--....-+-+-..++++.+-+...+.|          
T Consensus        12 ~ildG~ve~Gveii~k~~~ss-------------~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C   78 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKSS-------------TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVEC   78 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-------------CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHH
T ss_pred             HHHhhhHHhHHHHHHHHcccC-------------CccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHH
Confidence            455788899999988872222             577788888888888888888888888776543333          


Q ss_pred             ------chHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589           86 ------EEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus        86 ------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~  154 (176)
                            +..-+..-++.....|.-++-..++..+.+.+ +|++...-.+-.+|.+.|...++-+++.+.-+.|+.
T Consensus        79 ~~~~n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          79 GVINNTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHhcchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence                  22333445677788888888888988877533 788888889999999999999999999999998886

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.66  E-value=0.2  Score=35.26  Aligned_cols=132  Identities=12%  Similarity=0.028  Sum_probs=82.3

Q ss_pred             CHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCC----------------CCCCCCCCcHHHHHHHHHHHHhcCChHHHH
Q 036589            8 SPFRLASLLHLQKHPKLALQLFKNPNPNANDTEA----------------PPLKPFRYNLLHYDLIITKLGRAKMFDEMQ   71 (176)
Q Consensus         8 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~y~~li~~~~~~g~~~~a~   71 (176)
                      .|..++..+.+.+++..|.+++... .... ++.                ....+...++.....++..|-..|.+++..
T Consensus        42 d~~rl~~~~v~l~~~~~avd~~~k~-~~~~-~~k~~~~~l~~~~e~~la~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li  119 (336)
T d1b89a_          42 NFGRLASTLVHLGEYQAAVDGARKA-NSTR-TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELI  119 (336)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHH-TCHH-HHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHhhccHHHHHHHHHHc-CCHH-HHHHHHHHHHhCcHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCChHHHH
Confidence            3556667777777777666665544 1100 000                001112234444556777777788888888


Q ss_pred             HHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 036589           72 QILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNL  150 (176)
Q Consensus        72 ~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~  150 (176)
                      .+++.....  -..+...++-++..|++.+. ++..+.++..-      +.....-++..|-..+.+.++.-++..+.+
T Consensus       120 ~~Le~~~~~--~~~~~~~~~~L~~lyak~~~-~kl~e~l~~~s------~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~  189 (336)
T d1b89a_         120 TMLEAALGL--ERAHMGMFTELAILYSKFKP-QKMREHLELFW------SRVNIPKVLRAAEQAHLWAELVFLYDKYEE  189 (336)
T ss_dssp             HHHHHHTTS--TTCCHHHHHHHHHHHHTTCH-HHHHHHHHHHS------TTSCHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred             HHHHHHHcC--CccchHHHHHHHHHHHHhCh-HHHHHHHHhcc------ccCCHHHHHHHHHHcCChHHHHHHHHhcCC
Confidence            888876533  25567788899999999763 44444444332      223345678899999999999988887643

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=94.97  E-value=0.16  Score=30.35  Aligned_cols=113  Identities=12%  Similarity=0.009  Sum_probs=75.7

Q ss_pred             cChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHh
Q 036589           20 KHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR   99 (176)
Q Consensus        20 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~   99 (176)
                      .|+++|++.|++. .+.         +   +...+..|.  .....+.++|.+.+++.-+. |   +......|-..|..
T Consensus         7 kd~~~A~~~~~ka-a~~---------g---~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~   67 (133)
T d1klxa_           7 KDLKKAIQYYVKA-CEL---------N---EMFGCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYEN   67 (133)
T ss_dssp             HHHHHHHHHHHHH-HHT---------T---CTTHHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHH-HHC---------C---Chhhhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhh
Confidence            4678888888886 332         1   233333333  23456788999999988877 5   33444445555543


Q ss_pred             ----ccCHHHHHHHHHhcccCCCCccHhHHHHHHHHHHh----cCcHHHHHHHHHHHHhcccc
Q 036589          100 ----ARLLEHALQVFDEMPSFNVQRTVKSLNTLLNALLT----CGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus       100 ----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~l~~~m~~~~~~  154 (176)
                          ..+.++|.++|+...+.|   ++.....|-..|..    ..+.++|.++|+.-.+.|.+
T Consensus        68 g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~  127 (133)
T d1klxa_          68 GKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE  127 (133)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             ccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence                456899999999988776   34444555555554    46899999999998888765

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=94.90  E-value=0.1  Score=34.80  Aligned_cols=95  Identities=11%  Similarity=-0.016  Sum_probs=64.8

Q ss_pred             CCCHHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHhhcC
Q 036589            6 PTSPFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGR----AKMFDEMQQILHQLKHDT   81 (176)
Q Consensus         6 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~----~g~~~~a~~~~~~m~~~~   81 (176)
                      |..+..|=..+-+.+++++|++.|++. .+.+            +...+..|-..|..    ..+...|...++..... 
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kA-a~~g------------~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~-   67 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKA-CDLK------------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-   67 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH-HHTT------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHH-HHCC------------CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc-
Confidence            334556666777889999999999998 4432            56666667777776    56888999998888877 


Q ss_pred             CCCCchHHHHHHHHHHHh----ccCHHHHHHHHHhcccCC
Q 036589           82 RVIPEEIIFCNVISFYGR----ARLLEHALQVFDEMPSFN  117 (176)
Q Consensus        82 g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~  117 (176)
                      +.   ......+...+..    ..+.+.|...++...+.|
T Consensus        68 ~~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g  104 (265)
T d1ouva_          68 NY---SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK  104 (265)
T ss_dssp             TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             cc---cchhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence            42   2223333333332    456788888888777655

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.32  E-value=0.26  Score=29.39  Aligned_cols=61  Identities=7%  Similarity=-0.063  Sum_probs=43.8

Q ss_pred             HHHHHHhc---cCHHHHHHHHHhcccCCCCcc-HhHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589           93 VISFYGRA---RLLEHALQVFDEMPSFNVQRT-VKSLNTLLNALLTCGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus        93 li~~~~~~---g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~  154 (176)
                      ...++.+.   .++++++.+|++..+.+ +.+ ..++-.|--+|.+.|++++|.+.++.+.+..+.
T Consensus        41 YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~  105 (124)
T d2pqrb1          41 YAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  105 (124)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            44555544   45678999999887543 223 356667777888999999999999998876554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.20  E-value=0.12  Score=30.94  Aligned_cols=70  Identities=9%  Similarity=-0.112  Sum_probs=48.1

Q ss_pred             cHHHHHHHHHHHHhc---CChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCCccH
Q 036589           50 NLLHYDLIITKLGRA---KMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQRTV  122 (176)
Q Consensus        50 ~~~~y~~li~~~~~~---g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  122 (176)
                      ++.+--...-++.+.   .+++++..+++++.+. +..-....+-.|--+|.+.|++++|.+.++.+.+..  |+-
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~-~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie--P~n  106 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE--RNN  106 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTC
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC--CCc
Confidence            444433344455544   5678899999999876 322223455568888999999999999999998643  543

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.65  E-value=0.36  Score=27.43  Aligned_cols=34  Identities=18%  Similarity=0.131  Sum_probs=17.7

Q ss_pred             CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHhhc
Q 036589           47 FRYNLLHYDLIITKLGRAKMFDEMQQILHQLKHD   80 (176)
Q Consensus        47 ~~~~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~   80 (176)
                      +.|++.+..+.+.+|-+.+++..|.++++.++..
T Consensus        37 lVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K   70 (105)
T d1v54e_          37 LVPEPKIIDAALRACRRLNDFASAVRILEVVKDK   70 (105)
T ss_dssp             BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            3445555555555555555555555555555543

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.52  E-value=0.64  Score=26.38  Aligned_cols=44  Identities=7%  Similarity=0.110  Sum_probs=22.3

Q ss_pred             HHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHH
Q 036589          106 ALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFN  149 (176)
Q Consensus       106 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~  149 (176)
                      ..+-+..+-...+.|++....+-|.+|.+.+++..|.++|+..+
T Consensus        25 ~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK   68 (105)
T d1v54e_          25 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK   68 (105)
T ss_dssp             HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            33444444444445555555555555555555555555555444

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=91.42  E-value=0.82  Score=27.45  Aligned_cols=68  Identities=12%  Similarity=-0.003  Sum_probs=55.2

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHHHHHHHHHhcccCCCC
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLEHALQVFDEMPSFNVQ  119 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  119 (176)
                      +....+..++.+.+.|+-++..++++++.+.  -+++....-.+..+|.+.|...++-+++.+.=+.|++
T Consensus        85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn--~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          85 LNEHVNKALDILVIQGKRDKLEEIGREILKN--NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            4556777889999999999999999997776  3566677778999999999999999999887776654

>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.72  E-value=2.6  Score=26.78  Aligned_cols=105  Identities=11%  Similarity=0.066  Sum_probs=58.1

Q ss_pred             HHHHHHHHHhccChhHHHHhhcCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHhcCC--hHHHHHHHHHHhhcCCCCCc
Q 036589            9 PFRLASLLHLQKHPKLALQLFKNPNPNANDTEAPPLKPFRYNLLHYDLIITKLGRAKM--FDEMQQILHQLKHDTRVIPE   86 (176)
Q Consensus         9 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~li~~~~~~g~--~~~a~~~~~~m~~~~g~~~~   86 (176)
                      ...++.-|...++..+|.+.++++ ..         +.+.+ ..++..+..++ ..++  -+.+-+++..+.+. |+-..
T Consensus        13 ~~~il~Ey~~~~D~~Ea~~~l~el-~~---------p~~~~-~~V~~~i~~~l-e~~~~~re~~~~Ll~~L~~~-~~is~   79 (193)
T d1ug3a1          13 SKAIIEEYLHLNDMKEAVQCVQEL-AS---------PSLLF-IFVRHGVESTL-ERSAIAREHMGQLLHQLLCA-GHLST   79 (193)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHTT-CC---------GGGHH-HHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHT-TSSCH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHc-CC---------chhHH-HHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHC-CCCCH
Confidence            457888899999999999999999 33         22222 23333333333 3332  34466788888877 65555


Q ss_pred             hHHHHHHHHHHHhccC----HHHHHH----HHHhcccCCCCccHhHHH
Q 036589           87 EIIFCNVISFYGRARL----LEHALQ----VFDEMPSFNVQRTVKSLN  126 (176)
Q Consensus        87 ~~~~~~li~~~~~~g~----~~~a~~----~~~~m~~~~~~p~~~~~~  126 (176)
                      ......+-..+....+    ...|..    ++..+...|+.|-...++
T Consensus        80 ~~~~~gf~~~l~~l~Dl~iDiP~a~~~la~~~a~~i~~~~l~l~~l~~  127 (193)
T d1ug3a1          80 AQYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFR  127 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            4444444444433333    233443    344444455444433333

>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Programmed cell death 4, PDCD4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.43  E-value=2.6  Score=24.86  Aligned_cols=65  Identities=9%  Similarity=0.154  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHhccCHH--HHHHHHHhcccCCCC
Q 036589           53 HYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGRARLLE--HALQVFDEMPSFNVQ  119 (176)
Q Consensus        53 ~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~  119 (176)
                      -...++.-|...|+.++|.+.++++... ... ....+..+..+.-+.++-.  .+..++..+...|+.
T Consensus         9 k~~~ll~EY~~~~D~~Ea~~~l~eL~~p-~~~-~e~V~~~i~~ale~~~~~r~~~~~~Ll~~L~~~~~i   75 (129)
T d2nsza1           9 EIDMLLKEYLLSGDISEAEHCLKELEVP-HFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI   75 (129)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHTCG-GGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHcCCc-hhh-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCCCC
Confidence            4567888888888888888888888644 222 3455555666665555542  346677777765543

>d1khda1 a.46.2.1 (A:12-80) Anthranilate phosphoribosyltransferase (TrpD) {Pectobacterium carotovorum [TaxId: 554]}

class: All alpha proteins
fold: Methionine synthase domain-like
superfamily: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
family: Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain
domain: Anthranilate phosphoribosyltransferase (TrpD)
species: Pectobacterium carotovorum [TaxId: 554]

Probab=84.40  E-value=1.7  Score=22.56  Aligned_cols=65  Identities=8%  Similarity=0.036  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHhccC--HHHHHHHHHhcccCCCCccHhHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc
Q 036589           89 IFCNVISFYGRARL--LEHALQVFDEMPSFNVQRTVKSLNTLLNALLTCGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus        89 ~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~l~~~m~~~~~~  154 (176)
                      ||+.+|+.....++  .+++..+++.+.+.. .++...-.-|+....+.-..++...+.+.|++.+.+
T Consensus         1 t~~~il~kl~~g~~Ls~ee~~~~~~~i~~g~-~~d~qiaafL~al~~kg~t~dEi~g~~~am~~~~~~   67 (69)
T d1khda1           1 THQPILEKLFKSQSMTQEESHQLFAAIVRGE-LEDSQLAAALISMKMRGERPEEIAGAASALLADAQP   67 (69)
T ss_dssp             CCHHHHHHHHTTCCCCHHHHHHHHHHHTTTC-SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTSCC
T ss_pred             CHHHHHHHHHcCCCCCHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence            34555666554443  566777777766322 333333333334444444566666666777665543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=81.29  E-value=5.1  Score=25.90  Aligned_cols=98  Identities=12%  Similarity=0.056  Sum_probs=68.5

Q ss_pred             cHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHh----ccCHHHHHHHHHhcccCCCCccHhHH
Q 036589           50 NLLHYDLIITKLGRAKMFDEMQQILHQLKHDTRVIPEEIIFCNVISFYGR----ARLLEHALQVFDEMPSFNVQRTVKSL  125 (176)
Q Consensus        50 ~~~~y~~li~~~~~~g~~~~a~~~~~~m~~~~g~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~  125 (176)
                      |+..+..|...+-+.+++++|.+.|++..+. |   +...+..|-..|..    ..+...|...++...+.+   +....
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~   73 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-K---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC   73 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchh
Confidence            3556777777888899999999999999877 5   34455556666665    557899999998877655   33333


Q ss_pred             HHHHHHHHh----cCcHHHHHHHHHHHHhcccc
Q 036589          126 NTLLNALLT----CGKLDRMKELFISFNLKAIA  154 (176)
Q Consensus       126 ~~ll~~~~~----~g~~~~a~~l~~~m~~~~~~  154 (176)
                      ..+...+..    ..+.+.|...++...+.|..
T Consensus        74 ~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~  106 (265)
T d1ouva_          74 HLLGNLYYSGQGVSQNTNKALQYYSKACDLKYA  106 (265)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             hccccccccccccchhhHHHHHHHhhhhhhhhh
Confidence            444333333    45678888888877766554