Citrus Sinensis ID: 036939

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-----
MAVGFPQFKPSSMENILSSLSPTSVGLTQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDLDSHPVIDLAIDGADEVDPGLAVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEKHNGNCIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLGVTIKNK
ccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHHHHHHHccccccEEEEcccHHHHHHHHHcccccccccccccEEEEEEccccccccccccEEEEccccHHHHHHHHHHHHccccEEcccccEEcccccEEEEEEcccccccHHHHHHHHHcccccEEccccccccccEEEEEcccccEEEcc
ccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHHHHHHHHccccccEEEEccHHHHHHHHHccccEccHHHcccEEEEEEcccEEcccccccEEEccHHHHHHHHHHHHHHHHccccccccccEEEccccEEEEEcccccccccHHHHHHHHHccccEEEccHHHccccEEEEEcccccEEEEc
mavgfpqfkpssmenilsslsptsvgltqDELKKIAANKSVEFVKSGMvvglgtdstatHAVDKIGELLhqgklknivgiptsktthdqavslgiplsdldshpvidlaidgadevdpglavpveVVPVCWKftanrfpdlfkdcgcvakLRTCYekhngnciidlyfkkdigdmEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLGVTIKNK
mavgfpqfkpssmeniLSSLSPTSVGLTQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDLDSHPVIDLAIDGADEVDPGLAVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEKHNGNCIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVgklgvtiknk
MAVGFPQFKPSSMENILSSLSPTSVGLTQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDLDSHPVIDLAIDGADEVDPGLAVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEKHNGNCIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLGVTIKNK
**********************************IAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDLDSHPVIDLAIDGADEVDPGLAVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEKHNGNCIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLGVTI***
********************************KKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDLDSHPVIDLAIDGADEVDPGLAVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEKHNGNCIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLGV*****
MAVGFPQFKPSSMENILSSLSPTSVGLTQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDLDSHPVIDLAIDGADEVDPGLAVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEKHNGNCIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLGVTIKNK
*************************GLTQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDLDSHPVIDLAIDGADEVDPGLAVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEKHNGNCIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLGVTIKNK
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAVGFPQFKPSSMENILSSLSPTSVGLTQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDLDSHPVIDLAIDGADEVDPGLAVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEKHNGNCIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLGVTIKNK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query215 2.2.26 [Sep-21-2011]
Q9ZU38265 Probable ribose-5-phospha yes no 0.920 0.747 0.546 4e-65
B8FL28230 Ribose-5-phosphate isomer yes no 0.813 0.760 0.391 3e-29
Q72J47227 Ribose-5-phosphate isomer yes no 0.827 0.784 0.368 3e-25
Q5SIR5227 Ribose-5-phosphate isomer yes no 0.827 0.784 0.368 3e-25
Q7V003231 Ribose-5-phosphate isomer yes no 0.781 0.727 0.349 3e-25
Q9V0L6229 Ribose-5-phosphate isomer yes no 0.804 0.755 0.344 4e-25
Q5FQ98231 Ribose-5-phosphate isomer yes no 0.790 0.735 0.364 7e-25
Q8EN78224 Ribose-5-phosphate isomer yes no 0.827 0.794 0.355 3e-24
Q2JSC9230 Ribose-5-phosphate isomer yes no 0.818 0.765 0.362 5e-24
O50083229 Ribose-5-phosphate isomer yes no 0.804 0.755 0.340 1e-23
>sp|Q9ZU38|RPIA_ARATH Probable ribose-5-phosphate isomerase OS=Arabidopsis thaliana GN=At2g01290 PE=2 SV=1 Back     alignment and function desciption
 Score =  247 bits (630), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 134/245 (54%), Positives = 162/245 (66%), Gaps = 47/245 (19%)

Query: 17  LSSLSPTSVGLTQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKN 76
           ++S  P  + LTQDELK+IAA K+VEFV+SGMV+GLGT STA HAVD+IGELL QGKL+N
Sbjct: 21  VASSPPQPMNLTQDELKRIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLEN 80

Query: 77  IVGIPTSKTTHDQAVSLGIPLSDLDSHPVIDLAIDGADEVDP------------------ 118
           IVGIPTSK T +QA+SLGIPLSDLD+HPVIDL+IDGADEVDP                  
Sbjct: 81  IVGIPTSKKTQEQALSLGIPLSDLDAHPVIDLSIDGADEVDPFLNLVKGRGGSLLREKMI 140

Query: 119 -----------------------GLAVPVEVVPVCWKFTANRFPDLFKDCGCVAKLR--- 152
                                   LA+PVE+VP CWKFTA +   L +  GC A LR   
Sbjct: 141 EGASKKFVVIVDDSKMVKHIGGSKLALPVEIVPFCWKFTAEKLRSLLEGYGCEANLRLGE 200

Query: 153 --TCYEKHNGNCIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLGV 210
               +   NGN I+D++ ++D+GD+   S+ ILRL  GVVEHGMFLDMA+TVII G+LGV
Sbjct: 201 KGKAFVTDNGNYIVDMHVEEDMGDLGAVSDAILRL-PGVVEHGMFLDMASTVIIAGELGV 259

Query: 211 TIKNK 215
            IKNK
Sbjct: 260 KIKNK 264

Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 3EC: .EC: 1EC: .EC: 6
>sp|B8FL28|RPIA_DESAA Ribose-5-phosphate isomerase A OS=Desulfatibacillum alkenivorans (strain AK-01) GN=rpiA PE=3 SV=1 Back     alignment and function description
>sp|Q72J47|RPIA_THET2 Ribose-5-phosphate isomerase A OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rpiA PE=1 SV=1 Back     alignment and function description
>sp|Q5SIR5|RPIA_THET8 Ribose-5-phosphate isomerase A OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rpiA PE=3 SV=1 Back     alignment and function description
>sp|Q7V003|RPIA_PROMP Ribose-5-phosphate isomerase A OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=rpiA PE=3 SV=1 Back     alignment and function description
>sp|Q9V0L6|RPIA_PYRAB Ribose-5-phosphate isomerase A OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=rpiA PE=3 SV=1 Back     alignment and function description
>sp|Q5FQ98|RPIA_GLUOX Ribose-5-phosphate isomerase A OS=Gluconobacter oxydans (strain 621H) GN=rpiA PE=3 SV=1 Back     alignment and function description
>sp|Q8EN78|RPIA1_OCEIH Ribose-5-phosphate isomerase A 1 OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=rpiA1 PE=3 SV=1 Back     alignment and function description
>sp|Q2JSC9|RPIA_SYNJA Ribose-5-phosphate isomerase A OS=Synechococcus sp. (strain JA-3-3Ab) GN=rpiA PE=3 SV=1 Back     alignment and function description
>sp|O50083|RPIA_PYRHO Ribose-5-phosphate isomerase A OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=rpiA PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query215
356575632265 PREDICTED: probable ribose-5-phosphate i 0.995 0.807 0.567 6e-73
224058933271 predicted protein [Populus trichocarpa] 0.995 0.789 0.568 1e-72
449434554275 PREDICTED: probable ribose-5-phosphate i 0.953 0.745 0.600 3e-72
224101807264 predicted protein [Populus trichocarpa] 0.995 0.810 0.577 3e-71
356536220266 PREDICTED: probable ribose-5-phosphate i 0.995 0.804 0.554 1e-70
297746207 322 unnamed protein product [Vitis vinifera] 0.995 0.664 0.562 2e-70
449466286272 PREDICTED: probable ribose-5-phosphate i 0.874 0.691 0.626 2e-70
359478683 345 PREDICTED: probable ribose-5-phosphate i 0.995 0.620 0.562 2e-70
225424168269 PREDICTED: probable ribose-5-phosphate i 0.990 0.791 0.560 6e-70
224108353265 predicted protein [Populus trichocarpa] 0.995 0.807 0.563 2e-69
>gi|356575632|ref|XP_003555942.1| PREDICTED: probable ribose-5-phosphate isomerase-like [Glycine max] Back     alignment and taxonomy information
 Score =  279 bits (713), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 151/266 (56%), Positives = 181/266 (68%), Gaps = 52/266 (19%)

Query: 1   MAVGFPQF----KPSSMENILSSLSPTSVGLTQDELKKIAANKSVEFVKSGMVVGLGTDS 56
           MA+ +P F    K +    +L   SP+SV LTQD+LKKIAA K+VE+V+SGMV+GLGT S
Sbjct: 1   MAIPYPHFIATEKAAMDAGLLHPSSPSSVILTQDDLKKIAAYKAVEYVESGMVLGLGTGS 60

Query: 57  TATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDLDSHPVIDLAIDGADEV 116
           TA HAVD+IGELL QGKLK+IVGIPTS  THDQA+SLGIPLSDLDSHP +DLAIDGADEV
Sbjct: 61  TAKHAVDRIGELLRQGKLKDIVGIPTSTKTHDQALSLGIPLSDLDSHPTVDLAIDGADEV 120

Query: 117 DP-----------------------------------------GLAVPVEVVPVCWKFTA 135
           DP                                         GLA+PVEV+  CW+FTA
Sbjct: 121 DPFLNLVKGRGGSLLREKMVEGACKKFIVIVDESKLVNYLGGSGLAMPVEVIQFCWRFTA 180

Query: 136 NRFPDLFKDCGCVAKLRTCYEK------HNGNCIIDLYFKKDIGDMEVASNRILRLIAGV 189
            R   LF++ GCVAKLRT  EK       NGN I+DLYF++ IGD++ AS+ IL+L AGV
Sbjct: 181 ARLQKLFQEAGCVAKLRTFAEKDEPYVTDNGNFIVDLYFERSIGDLKAASDAILQL-AGV 239

Query: 190 VEHGMFLDMATTVIIVGKLGVTIKNK 215
           VEHGMFLDMATTVI+ G+LG+T+KNK
Sbjct: 240 VEHGMFLDMATTVIVAGELGLTVKNK 265

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224058933|ref|XP_002299653.1| predicted protein [Populus trichocarpa] gi|222846911|gb|EEE84458.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449434554|ref|XP_004135061.1| PREDICTED: probable ribose-5-phosphate isomerase-like [Cucumis sativus] gi|449493428|ref|XP_004159286.1| PREDICTED: probable ribose-5-phosphate isomerase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224101807|ref|XP_002312428.1| predicted protein [Populus trichocarpa] gi|118488529|gb|ABK96077.1| unknown [Populus trichocarpa] gi|222852248|gb|EEE89795.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356536220|ref|XP_003536637.1| PREDICTED: probable ribose-5-phosphate isomerase-like [Glycine max] Back     alignment and taxonomy information
>gi|297746207|emb|CBI16263.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449466286|ref|XP_004150857.1| PREDICTED: probable ribose-5-phosphate isomerase-like [Cucumis sativus] gi|449523281|ref|XP_004168652.1| PREDICTED: probable ribose-5-phosphate isomerase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359478683|ref|XP_002282058.2| PREDICTED: probable ribose-5-phosphate isomerase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|225424168|ref|XP_002284079.1| PREDICTED: probable ribose-5-phosphate isomerase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224108353|ref|XP_002314818.1| predicted protein [Populus trichocarpa] gi|222863858|gb|EEF00989.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query215
TAIR|locus:2038801265 RPI2 "ribose-5-phosphate isome 0.483 0.392 0.759 1.3e-63
TAIR|locus:2026296267 RSW10 "RADIAL SWELLING 10" [Ar 0.479 0.385 0.75 2e-63
TAIR|locus:2084898276 EMB3119 "EMBRYO DEFECTIVE 3119 0.511 0.398 0.636 5.4e-53
TIGR_CMR|BA_2791220 BA_2791 "ribose 5-phosphate is 0.409 0.4 0.455 1.7e-25
UNIPROTKB|P49247311 RPIA "Ribose-5-phosphate isome 0.474 0.327 0.457 1.2e-24
UNIPROTKB|J9NX73311 RPIA "Uncharacterized protein" 0.474 0.327 0.466 1.5e-24
ZFIN|ZDB-GENE-041114-24275 rpia "ribose 5-phosphate isome 0.427 0.334 0.468 3e-24
UNIPROTKB|G5E534306 RPIA "Ribose-5-phosphate isome 0.418 0.294 0.5 4.9e-24
UNIPROTKB|Q3T186264 RPIA "Ribose-5-phosphate isome 0.418 0.340 0.5 4.9e-24
UNIPROTKB|A2TLM1306 RPIA "Ribose-5-phosphate isome 0.474 0.333 0.447 7.9e-24
TAIR|locus:2038801 RPI2 "ribose-5-phosphate isomerase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 395 (144.1 bits), Expect = 1.3e-63, Sum P(2) = 1.3e-63
 Identities = 79/104 (75%), Positives = 92/104 (88%)

Query:    17 LSSLSPTSVGLTQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKN 76
             ++S  P  + LTQDELK+IAA K+VEFV+SGMV+GLGT STA HAVD+IGELL QGKL+N
Sbjct:    21 VASSPPQPMNLTQDELKRIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLEN 80

Query:    77 IVGIPTSKTTHDQAVSLGIPLSDLDSHPVIDLAIDGADEVDPGL 120
             IVGIPTSK T +QA+SLGIPLSDLD+HPVIDL+IDGADEVDP L
Sbjct:    81 IVGIPTSKKTQEQALSLGIPLSDLDAHPVIDLSIDGADEVDPFL 124
GO:0004751 "ribose-5-phosphate isomerase activity" evidence=IEA;IDA
GO:0005737 "cytoplasm" evidence=ISM;IDA
GO:0009052 "pentose-phosphate shunt, non-oxidative branch" evidence=IEA
GO:0008219 "cell death" evidence=IMP
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP
TAIR|locus:2026296 RSW10 "RADIAL SWELLING 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084898 EMB3119 "EMBRYO DEFECTIVE 3119" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|BA_2791 BA_2791 "ribose 5-phosphate isomerase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|P49247 RPIA "Ribose-5-phosphate isomerase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J9NX73 RPIA "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-24 rpia "ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|G5E534 RPIA "Ribose-5-phosphate isomerase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T186 RPIA "Ribose-5-phosphate isomerase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|A2TLM1 RPIA "Ribose-5-phosphate isomerase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZU38RPIA_ARATH5, ., 3, ., 1, ., 60.54690.92090.7471yesno
Q02VQ6RPIA_LACLS5, ., 3, ., 1, ., 60.35420.83720.8035yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.3.1.60.824
3rd Layer5.3.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query215
PLN02384264 PLN02384, PLN02384, ribose-5-phosphate isomerase 1e-112
TIGR00021218 TIGR00021, rpiA, ribose 5-phosphate isomerase 4e-59
cd01398213 cd01398, RPI_A, RPI_A: Ribose 5-phosphate isomeras 6e-58
PRK00702220 PRK00702, PRK00702, ribose-5-phosphate isomerase A 7e-56
COG0120227 COG0120, RpiA, Ribose 5-phosphate isomerase [Carbo 2e-50
pfam06026172 pfam06026, Rib_5-P_isom_A, Ribose 5-phosphate isom 1e-38
PRK13978228 PRK13978, PRK13978, ribose-5-phosphate isomerase A 7e-20
>gnl|CDD|215215 PLN02384, PLN02384, ribose-5-phosphate isomerase Back     alignment and domain information 
 Score =  320 bits (822), Expect = e-112
 Identities = 158/266 (59%), Positives = 181/266 (68%), Gaps = 53/266 (19%)

Query: 1   MAVGFPQF----KPSSMENILSSLSPTSVGLTQDELKKIAANKSVEFVKSGMVVGLGTDS 56
           MA+ +P F    K S     + S S   + LTQDELKKIAA K+VEFV+SGMV+GLGT S
Sbjct: 1   MAIAYPPFIGSEKDSMEVGSMLSPSSPVI-LTQDELKKIAAYKAVEFVESGMVLGLGTGS 59

Query: 57  TATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDLDSHPVIDLAIDGADEV 116
           TA HAVD+IGELL QGKLKNI+GIPTSK TH+QAVSLGIPLSDLDSHPV+DLAIDGADEV
Sbjct: 60  TAKHAVDRIGELLRQGKLKNIIGIPTSKKTHEQAVSLGIPLSDLDSHPVVDLAIDGADEV 119

Query: 117 DP-----------------------------------------GLAVPVEVVPVCWKFTA 135
           DP                                         GLA+PVEVVP CWKFTA
Sbjct: 120 DPNLNLVKGRGGSLLREKMIEGACKKFVVIVDESKLVKHIGGSGLAMPVEVVPFCWKFTA 179

Query: 136 NRFPDLFKDCGCVAKLRT------CYEKHNGNCIIDLYFKKDIGDMEVASNRILRLIAGV 189
            +   LF+  GCVAKLRT       +   NGN I+DLYFK+DIGD++VAS+ ILRL AGV
Sbjct: 180 EKLQSLFEYAGCVAKLRTKNNGEEPFVTDNGNYIVDLYFKRDIGDLKVASDAILRL-AGV 238

Query: 190 VEHGMFLDMATTVIIVGKLGVTIKNK 215
           VEHGMFLDMATTVI+ G+LGVTIK+K
Sbjct: 239 VEHGMFLDMATTVIVAGELGVTIKDK 264

Length = 264
>gnl|CDD|232786 TIGR00021, rpiA, ribose 5-phosphate isomerase Back     alignment and domain information
>gnl|CDD|238692 cd01398, RPI_A, RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway Back     alignment and domain information
>gnl|CDD|234816 PRK00702, PRK00702, ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>gnl|CDD|223198 COG0120, RpiA, Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|218860 pfam06026, Rib_5-P_isom_A, Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Back     alignment and domain information
>gnl|CDD|184433 PRK13978, PRK13978, ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 215
PLN02384264 ribose-5-phosphate isomerase 100.0
PRK13978228 ribose-5-phosphate isomerase A; Provisional 100.0
COG0120227 RpiA Ribose 5-phosphate isomerase [Carbohydrate tr 100.0
PRK00702220 ribose-5-phosphate isomerase A; Provisional 100.0
TIGR00021218 rpiA ribose 5-phosphate isomerase. This model desc 100.0
KOG3075261 consensus Ribose 5-phosphate isomerase [Carbohydra 100.0
cd01398213 RPI_A RPI_A: Ribose 5-phosphate isomerase type A ( 100.0
PF06026173 Rib_5-P_isom_A: Ribose 5-phosphate isomerase A (ph 100.0
PF00455161 DeoRC: DeoR C terminal sensor domain; InterPro: IP 99.35
PRK10681252 DNA-binding transcriptional repressor DeoR; Provis 99.2
PRK09802269 DNA-binding transcriptional regulator AgaR; Provis 99.17
PRK10906252 DNA-binding transcriptional repressor GlpR; Provis 99.15
PRK10411240 DNA-binding transcriptional activator FucR; Provis 99.15
PRK13509251 transcriptional repressor UlaR; Provisional 99.14
PRK10434256 srlR DNA-bindng transcriptional repressor SrlR; Pr 99.13
COG1349253 GlpR Transcriptional regulators of sugar metabolis 99.0
COG1184301 GCD2 Translation initiation factor 2B subunit, eIF 97.0
cd00458169 SugarP_isomerase SugarP_isomerase: Sugar Phosphate 96.76
PF04198255 Sugar-bind: Putative sugar-binding domain; InterPr 96.67
COG2390321 DeoR Transcriptional regulator, contains sigma fac 96.07
TIGR00511301 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e 95.31
PRK08335275 translation initiation factor IF-2B subunit alpha; 95.1
TIGR00524303 eIF-2B_rel eIF-2B alpha/beta/delta-related unchara 95.05
PRK15418318 transcriptional regulator LsrR; Provisional 94.96
PRK08535310 translation initiation factor IF-2B subunit delta; 94.66
PF01008282 IF-2B: Initiation factor 2 subunit family; InterPr 94.57
TIGR00512331 salvage_mtnA S-methyl-5-thioribose-1-phosphate iso 94.36
PRK06036339 translation initiation factor IF-2B subunit alpha; 92.41
PRK06372253 translation initiation factor IF-2B subunit delta; 92.25
PRK05720344 mtnA methylthioribose-1-phosphate isomerase; Revie 91.89
COG2057225 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, 91.54
PRK05772363 translation initiation factor IF-2B subunit alpha; 91.25
PRK06371329 translation initiation factor IF-2B subunit alpha; 91.2
PF0392779 NapD: NapD protein; InterPro: IPR005623 This entry 90.11
PRK00443261 nagB glucosamine-6-phosphate deaminase; Provisiona 89.9
PRK08334356 translation initiation factor IF-2B subunit beta; 88.76
PF0103774 AsnC_trans_reg: AsnC family; InterPro: IPR019887 T 88.37
PRK09920219 acetyl-CoA:acetoacetyl-CoA transferase subunit alp 88.22
COG1102179 Cmk Cytidylate kinase [Nucleotide transport and me 87.1
TIGR02429222 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit 86.05
COG2230283 Cfa Cyclopropane fatty acid synthase and related m 85.84
cd01399232 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-p 85.83
TIGR02428207 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit 85.41
KOG1466313 consensus Translation initiation factor 2B, alpha 84.58
PF02550198 AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase 83.81
PRK1055387 assembly protein for periplasmic nitrate reductase 83.05
>PLN02384 ribose-5-phosphate isomerase Back     alignment and domain information 
Probab=100.00  E-value=1.3e-61  Score=427.10  Aligned_cols=214  Identities=75%  Similarity=1.141  Sum_probs=190.9

Q ss_pred             CCcCCCccccchhh--hhhccCCCCCC-CCCHHHHHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCE
Q 036939            1 MAVGFPQFKPSSME--NILSSLSPTSV-GLTQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNI   77 (215)
Q Consensus         1 ~~~~~~~~~~~~~~--~~~~~~~~~~~-m~~~~~~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i   77 (215)
                      ||..||.|--+--.  .+-+-|++.|+ .|+++++|+++|++|++||++||+||||||||+.+|+++|++|++++++.++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~K~~aA~~A~~~V~~gmvVGLGTGSTv~~~I~~La~r~~~~~l~~I   80 (264)
T PLN02384          1 MAIAYPPFIGSEKDSMEVGSMLSPSSPVILTQDELKKIAAYKAVEFVESGMVLGLGTGSTAKHAVDRIGELLRQGKLKNI   80 (264)
T ss_pred             CCCCCCccccccccchhhcCcCCCCCCCCCCHHHHHHHHHHHHHHhccCCCEEEecchHHHHHHHHHHHHhhhhccccce
Confidence            78999999766422  24454555444 2457889999999999999999999999999999999999999988888789


Q ss_pred             EEecCcHHHHHHHHHCCCCeeecCCCCceeEEEecCCcccC---------------------------------------
Q 036939           78 VGIPTSKTTHDQAVSLGIPLSDLDSHPVIDLAIDGADEVDP---------------------------------------  118 (215)
Q Consensus        78 ~~V~tS~~t~~~~~~~Gi~v~~l~~~~~iDl~iDGaDeVd~---------------------------------------  118 (215)
                      ++||||.+|+.+|+++|||+.++++++++|+|||||||||+                                       
T Consensus        81 ~~VpTS~~T~~~a~~~GIpl~~l~~v~~iDiaiDGADEId~~lnlIKGGGgallrEKivA~~A~~~IiI~DesK~V~~Lg  160 (264)
T PLN02384         81 IGIPTSKKTHEQAVSLGIPLSDLDSHPVVDLAIDGADEVDPNLNLVKGRGGSLLREKMIEGACKKFVVIVDESKLVKHIG  160 (264)
T ss_pred             EEEcCcHHHHHHHHHcCCcEeccccCCcccEEEECCceeCCCCCEEEeCcHHHHHHHHHHHhcCeEEEEEeCcceecccC
Confidence            99999999999999999999999999999999999999998                                       


Q ss_pred             --CCCeeEEEccccHHHHHHHHhcchhcCCCceeecc------eeEecCCCEEEeecCCCCCCCHHHHHHHHccccCeEE
Q 036939          119 --GLAVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRT------CYEKHNGNCIIDLYFKKDIGDMEVASNRILRLIAGVV  190 (215)
Q Consensus       119 --K~plPVEV~P~a~~~v~~~l~~l~~~~G~~~~lR~------p~vTDnGN~IlD~~f~~~i~dp~~l~~~L~~i~pGVV  190 (215)
                        +|||||||+|++|.+|.++|+++|...|+.+++|+      |++|||||||+||+|+.++.||++++++|++| ||||
T Consensus       161 ~~~~plPVEV~p~a~~~v~~~L~~l~~~~g~~~~lR~~~~g~~p~vTDnGN~IlD~~f~~~i~dp~~l~~~L~~i-pGVV  239 (264)
T PLN02384        161 GSGLAMPVEVVPFCWKFTAEKLQSLFEYAGCVAKLRTKNNGEEPFVTDNGNYIVDLYFKRDIGDLKVASDAILRL-AGVV  239 (264)
T ss_pred             CCCCCEEEEECccHHHHHHHHHHHHhhccCCceEEeccCCCCCcEECCCCCEEEEecCCCCCCCHHHHHHHHhCC-CcEe
Confidence              14899999999999999999998655578899994      89999999999999983389999999999999 9999


Q ss_pred             eeeeccccccEEEEEcCCCeEEecC
Q 036939          191 EHGMFLDMATTVIIVGKLGVTIKNK  215 (215)
Q Consensus       191 e~GLF~~~a~~vivg~~~Gv~~~~~  215 (215)
                      |||||.++++.|++|+++|+++-.|
T Consensus       240 E~GLF~~~a~~vivg~~~Gv~~~~~  264 (264)
T PLN02384        240 EHGMFLDMATTVIVAGELGVTIKDK  264 (264)
T ss_pred             ccCcccCcCCEEEEEcCCceEEeCC
Confidence            9999999999999999999877554

>PRK13978 ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK00702 ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>TIGR00021 rpiA ribose 5-phosphate isomerase Back     alignment and domain information
>KOG3075 consensus Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway Back     alignment and domain information
>PF06026 Rib_5-P_isom_A: Ribose 5-phosphate isomerase A (phosphoriboisomerase A); InterPro: IPR004788 Ribose 5-phosphate isomerase, also known as phosphoriboisomerase, catalyses the reversible conversion of D-ribose 5-phosphate to D-ribulose 5-phosphate, the first step in the non-oxidative branch of the pentose phosphate pathway [] Back     alignment and domain information
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional Back     alignment and domain information
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional Back     alignment and domain information
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional Back     alignment and domain information
>PRK10411 DNA-binding transcriptional activator FucR; Provisional Back     alignment and domain information
>PRK13509 transcriptional repressor UlaR; Provisional Back     alignment and domain information
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional Back     alignment and domain information
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism] Back     alignment and domain information
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00458 SugarP_isomerase SugarP_isomerase: Sugar Phosphate Isomerase family; includes type A ribose 5-phosphate isomerase (RPI_A), glucosamine-6-phosphate (GlcN6P) deaminase, and 6-phosphogluconolactonase (6PGL) Back     alignment and domain information
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC Back     alignment and domain information
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription] Back     alignment and domain information
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family Back     alignment and domain information
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated Back     alignment and domain information
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins Back     alignment and domain information
>PRK15418 transcriptional regulator LsrR; Provisional Back     alignment and domain information
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit Back     alignment and domain information
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase Back     alignment and domain information
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed Back     alignment and domain information
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism] Back     alignment and domain information
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC Back     alignment and domain information
>PRK00443 nagB glucosamine-6-phosphate deaminase; Provisional Back     alignment and domain information
>PRK08334 translation initiation factor IF-2B subunit beta; Validated Back     alignment and domain information
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities Back     alignment and domain information
>PRK09920 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha; Provisional Back     alignment and domain information
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR02429 pcaI_scoA_fam 3-oxoacid CoA-transferase, A subunit Back     alignment and domain information
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd01399 GlcN6P_deaminase GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium Back     alignment and domain information
>TIGR02428 pcaJ_scoB_fam 3-oxoacid CoA-transferase, B subunit Back     alignment and domain information
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF02550 AcetylCoA_hydro: Acetyl-CoA hydrolase/transferase N-terminal domain; InterPro: IPR003702 This family contains several enzymes which take part in pathways involving acetyl-CoA Back     alignment and domain information
>PRK10553 assembly protein for periplasmic nitrate reductase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query215
1uj5_A227 Crystal Structure Of Thermus Thermophilus Ribose-5- 2e-26
2f8m_A244 Ribose 5-Phosphate Isomerase From Plasmodium Falcip 9e-26
1uj4_A227 Crystal Structure Of Thermus Thermophilus Ribose-5- 9e-25
1lk5_A229 Structure Of The D-Ribose-5-Phosphate Isomerase Fro 1e-24
3l7o_A225 Crystal Structure Of Ribose-5-Phosphate Isomerase A 1e-21
4gmk_A228 Crystal Structure Of Ribose 5-Phosphate Isomerase F 2e-21
3ixq_A226 Structure Of Ribose 5-Phosphate Isomerase A From Me 3e-13
3enq_A235 Substrate And Inhibitor Complexes Of Ribose 5-Phosp 1e-12
3hhe_A255 Crystal Structure Of Ribose-5-Phosphate Isomerase A 6e-12
1ks2_A219 Crystal Structure Analysis Of The Rpia, Structural 1e-11
1lkz_A219 Crystal Structure Of D-Ribose-5-Phosphate Isomerase 3e-11
3kwm_A224 Crystal Structure Of Ribose-5-Isomerase A Length = 3e-09
1m0s_A219 Northeast Structural Genomics Consortium (Nesg Id I 3e-09
1xtz_A264 Crystal Structure Of The S. Cerevisiae D-Ribose-5-P 6e-09
3u7j_A239 Crystal Structure Of Ribose-5-Phosphate Isomerase A 2e-06
>pdb|1UJ5|A Chain A, Crystal Structure Of Thermus Thermophilus Ribose-5-Phosphate Isomerase Complexed With Ribose-5-Phosphate Length = 227 Back     alignment and structure 
Iteration: 1

 Score =  115 bits (287), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/220 (36%), Positives = 108/220 (49%), Gaps = 42/220 (19%)
Query: 30  DELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQ 89
           +  KK AA+ ++ +V+ GMVVGLGT STA +AV ++   L +G+LK +VG+PTS+ T + 
Sbjct: 6   ESYKKEAAHAAIAYVQDGMVVGLGTGSTARYAVLELARRLREGELKGVVGVPTSRATEEL 65
Query: 90  AVSLGIPLSDLDSHPVIDLAIDGADEVDPGLA---------------------------- 121
           A   GIPL DL    V DLAIDGADE+ PGLA                            
Sbjct: 66  AKREGIPLVDLPPEGV-DLAIDGADEIAPGLALIKGMGGALLREKIVERVAKEFIVIADH 124
Query: 122 -----------VPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEKHNGNCIIDLYFKK 170
                      VPVE+VP  ++ T     DL  +          Y    G+ I D  F  
Sbjct: 125 TKKVPVLGRGPVPVEIVPFGYRATLKAIADLGGEPELRMDGDEFYFTDGGHLIADCRFGP 184
Query: 171 DIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLGV 210
            IGD  +  +R L  I GVVE G+F+ MAT  ++ G  GV
Sbjct: 185 -IGD-PLGLHRALLEIPGVVETGLFVGMATRALVAGPFGV 222
>pdb|2F8M|A Chain A, Ribose 5-Phosphate Isomerase From Plasmodium Falciparum Length = 244 Back     alignment and structure
>pdb|1UJ4|A Chain A, Crystal Structure Of Thermus Thermophilus Ribose-5-phosphate Isomerase Length = 227 Back     alignment and structure
>pdb|1LK5|A Chain A, Structure Of The D-Ribose-5-Phosphate Isomerase From Pyrococcus Horikoshii Length = 229 Back     alignment and structure
>pdb|3L7O|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From Streptococcus Mutans Ua159 Length = 225 Back     alignment and structure
>pdb|4GMK|A Chain A, Crystal Structure Of Ribose 5-Phosphate Isomerase From The Probiotic Bacterium Lactobacillus Salivarius Ucc118 Length = 228 Back     alignment and structure
>pdb|3IXQ|A Chain A, Structure Of Ribose 5-Phosphate Isomerase A From Methanocaldococcus Jannaschii Length = 226 Back     alignment and structure
>pdb|3ENQ|A Chain A, Substrate And Inhibitor Complexes Of Ribose 5-Phosphate Isomerase A From Vibrio Vulnificus Yj016 Length = 235 Back     alignment and structure
>pdb|3HHE|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From Bartonella Henselae Length = 255 Back     alignment and structure
>pdb|1KS2|A Chain A, Crystal Structure Analysis Of The Rpia, Structural Genomics, Protein Ec1268. Length = 219 Back     alignment and structure
>pdb|1LKZ|A Chain A, Crystal Structure Of D-Ribose-5-Phosphate Isomerase (Rpia) From Escherichia Coli. Length = 219 Back     alignment and structure
>pdb|3KWM|A Chain A, Crystal Structure Of Ribose-5-Isomerase A Length = 224 Back     alignment and structure
>pdb|1M0S|A Chain A, Northeast Structural Genomics Consortium (Nesg Id Ir21) Length = 219 Back     alignment and structure
>pdb|1XTZ|A Chain A, Crystal Structure Of The S. Cerevisiae D-Ribose-5-Phosphate Isomerase: Comparison With The Archeal And Bacterial Enzymes Length = 264 Back     alignment and structure
>pdb|3U7J|A Chain A, Crystal Structure Of Ribose-5-Phosphate Isomerase A From Burkholderia Thailandensis Length = 239 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query215
2f8m_A244 Ribose 5-phosphate isomerase; structural genomics, 6e-69
1lk5_A229 D-ribose-5-phosphate isomerase; alpha/beta structu 8e-68
1uj6_A227 Ribose 5-phosphate isomerase; enzyme-inhibitor com 1e-64
3hhe_A255 Ribose-5-phosphate isomerase A; niaid, ssgcid, dec 3e-63
3l7o_A225 Ribose-5-phosphate isomerase A; RPIA; 1.70A {Strep 7e-63
1o8b_A219 Ribose 5-phosphate isomerase; RPIA, PSI, protein S 3e-61
1xtz_A264 Ribose-5-phosphate isomerase; yeast; 2.10A {Saccha 1e-60
1m0s_A219 Ribose-5-phosphate isomerase A; D-ribose 5-phospha 1e-59
2pjm_A226 Ribose-5-phosphate isomerase A; 3D-structure, stru 1e-59
3kwm_A224 Ribose-5-phosphate isomerase A; structural genomic 9e-59
3uw1_A239 Ribose-5-phosphate isomerase A; ssgcid, seattle st 7e-57
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum} Length = 244 Back     alignment and structure
 Score =  210 bits (536), Expect = 6e-69
 Identities = 77/235 (32%), Positives = 110/235 (46%), Gaps = 48/235 (20%)

Query: 28  TQDELKKIAANKSV-EFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTT 86
             D LKKI A K+V E+V+S M +GLGT ST  + +++I  LL  GKLK++V IPTS  T
Sbjct: 8   HMDSLKKIVAYKAVDEYVQSNMTIGLGTGSTVFYVLERIDNLLKSGKLKDVVCIPTSIDT 67

Query: 87  HDQAVSLGIPLSDLDSHPVIDLAIDGADEVDPGL-------------------------- 120
             +A  LGIPL+ L+ H  ID+ IDG DE+D  L                          
Sbjct: 68  ELKARKLGIPLTTLEKHSNIDITIDGTDEIDLNLNLIKGRGGALVREKLVASSSSLLIII 127

Query: 121 ---------------AVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEK----HNGN 161
                          AVP+E++   ++        ++   GC  K+R    +     N N
Sbjct: 128 GDESKLCTNGLGMTGAVPIEILTFGYEKIIENLLKIYTLKGCTYKIRKRNGEIFITDNKN 187

Query: 162 CIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLG-VTIKNK 215
            I+D +F + I D+     RI     GVV+HG+F++M    +I    G V   NK
Sbjct: 188 YIVDFFFTEPIQDLLETCTRIKM-TTGVVDHGIFVNMTNVALISKHDGTVLTLNK 241
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A* Length = 229 Back     alignment and structure
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A* Length = 227 Back     alignment and structure
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae} Length = 255 Back     alignment and structure
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans} Length = 225 Back     alignment and structure
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A* Length = 219 Back     alignment and structure
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae} Length = 264 Back     alignment and structure
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1 Length = 219 Back     alignment and structure
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp} Length = 224 Back     alignment and structure
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A* Length = 239 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query215
4gmk_A228 Ribose-5-phosphate isomerase A; D-ribose-5-phospha 100.0
3ixq_A226 Ribose-5-phosphate isomerase A; structural genomic 100.0
3l7o_A225 Ribose-5-phosphate isomerase A; RPIA; 1.70A {Strep 100.0
3hhe_A255 Ribose-5-phosphate isomerase A; niaid, ssgcid, dec 100.0
3uw1_A239 Ribose-5-phosphate isomerase A; ssgcid, seattle st 100.0
2pjm_A226 Ribose-5-phosphate isomerase A; 3D-structure, stru 100.0
3kwm_A224 Ribose-5-phosphate isomerase A; structural genomic 100.0
1lk5_A229 D-ribose-5-phosphate isomerase; alpha/beta structu 100.0
2f8m_A244 Ribose 5-phosphate isomerase; structural genomics, 100.0
1uj6_A227 Ribose 5-phosphate isomerase; enzyme-inhibitor com 100.0
1xtz_A264 Ribose-5-phosphate isomerase; yeast; 2.10A {Saccha 100.0
1m0s_A219 Ribose-5-phosphate isomerase A; D-ribose 5-phospha 100.0
1o8b_A219 Ribose 5-phosphate isomerase; RPIA, PSI, protein S 100.0
1vb5_A276 Translation initiation factor EIF-2B; 2.20A {Pyroc 97.96
2w48_A315 Sorbitol operon regulator; SORC, activator, repres 97.65
2o0m_A345 Transcriptional regulator, SORC family; structural 97.18
3efb_A266 Probable SOR-operon regulator; alpha-beta-alpha sa 96.64
3kv1_A267 Transcriptional repressor; alpha-beta structure, s 96.32
3nze_A267 Putative transcriptional regulator, sugar-binding; 96.3
2okg_A255 Central glycolytic gene regulator; alpha/beta/alph 96.22
2gnp_A266 Transcriptional regulator; structural genomics, MC 96.19
3qli_A 455 Coenzyme A transferase; COEN transferase; 1.90A {Y 95.34
2r5f_A264 Transcriptional regulator, putative; transcription 95.14
3ecs_A315 Translation initiation factor EIF-2B subunit alpha 94.89
1k6d_A220 Acetate COA-transferase alpha subunit; structural 94.31
3cdk_A241 Succinyl-COA:3-ketoacid-coenzyme A transferase sub 94.01
3d3u_A439 4-hydroxybutyrate COA-transferase; alpha-beta prot 93.49
3a11_A338 Translation initiation factor EIF-2B, delta subun; 93.46
1t5o_A351 EIF2BD, translation initiation factor EIF2B, subun 93.26
3rrl_A235 Succinyl-COA:3-ketoacid-coenzyme A transferase SU; 92.9
2ahu_A 531 Putative enzyme YDIF; COA transferase, glutamyl th 92.84
2yvk_A374 Methylthioribose-1-phosphate isomerase; methionine 92.58
1xr4_A 509 Putative citrate lyase alpha chain/citrate-ACP TR; 92.09
3d3u_A 439 4-hydroxybutyrate COA-transferase; alpha-beta prot 91.58
1poi_A 317 Glutaconate coenzyme A-transferase; COA, glutamate 91.4
2a0u_A383 Initiation factor 2B; SGPP, structural genomics, P 91.31
1fs5_A266 Glucosamine-6-phosphate deaminase; allosteric enzy 90.1
2bkx_A242 Glucosamine-6-phosphate deaminase; hydrolase, subs 89.98
1t9k_A347 Probable methylthioribose-1-phosphate isomerase; s 89.09
1ne7_A289 Glucosamine-6-phosphate isomerase; V-type like all 88.46
2oas_A 436 ATOA, 4-hydroxybutyrate coenzyme A transferase; al 87.58
2ri0_A234 Glucosamine-6-phosphate deaminase; carbohydrate me 87.36
2hj0_A 519 Putative citrate lyase, ALFA subunit; alpha beta p 86.52
2jsx_A95 Protein NAPD; TAT, proofreading, cytoplasm, chaper 85.4
2cvi_A83 75AA long hypothetical regulatory protein ASNC; st 85.03
2zbc_A83 83AA long hypothetical transcriptional regulator; 83.17
2nvv_A 506 Acetyl-COA hydrolase/transferase family protein; a 83.14
1xr4_A509 Putative citrate lyase alpha chain/citrate-ACP TR; 83.09
2g39_A 497 Acetyl-COA hydrolase; coenzyme A transferase, stru 82.93
3gk7_A 448 4-hydroxybutyrate COA-transferase; alpha/beta prot 81.4
3k6m_A 481 Succinyl-COA:3-ketoacid-coenzyme A transferase 1, 80.72
4eu9_A 514 Succinyl-COA:acetate coenzyme A transferase; HET: 80.56
3eh7_A 434 4-hydroxybutyrate COA-transferase; citrate lyase, 80.56
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius} Back     alignment and structure
Probab=100.00  E-value=2.5e-63  Score=429.68  Aligned_cols=182  Identities=41%  Similarity=0.623  Sum_probs=174.9

Q ss_pred             CCHHHHHHHHHHHHHhcCcCCCEEEeCcChhHHHHHHHHHhHHhcCCCCCEEEecCcHHHHHHHHHCCCCeeecCCCCce
Q 036939           27 LTQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTTHDQAVSLGIPLSDLDSHPVI  106 (215)
Q Consensus        27 ~~~~~~K~~aA~~A~~~V~~g~vIGLGsGSTv~~~i~~L~~~~~~~~l~~i~~V~tS~~t~~~~~~~Gi~v~~l~~~~~i  106 (215)
                      ++|+++|+++|++|++||++||+||||||||+.||+++|+++++++++ ++++||||.+|+.+|+++||++.++++++++
T Consensus         2 ~~qd~~K~~aa~~A~~~V~~gmvvGlGTGSTv~~~i~~L~~~~~~~~l-~i~~V~tS~~t~~~a~~~Gi~l~~l~~~~~i   80 (228)
T 4gmk_A            2 PNQDELKQLVGTKAVEWIKDGMIVGLGTGSTVKYMVDALGKRVNEEGL-DIVGVTTSIRTAEQAKSLGIVIKDIDEVDHI   80 (228)
T ss_dssp             CHHHHHHHHHHHHHGGGCCTTCEEEECCSHHHHHHHHHHHHHHHHHCC-CCEEEESSHHHHHHHHHTTCCBCCGGGSSCE
T ss_pred             cCHHHHHHHHHHHHHHhCCCCCEEEECchHHHHHHHHHHHHHHhhcCC-cEEEEeCcHHHHHHHHHcCCceeChHHCCcc
Confidence            469999999999999999999999999999999999999999988888 7999999999999999999999999999999


Q ss_pred             eEEEecCCcccC---------------------------------------CCCeeEEEccccHHHHHHHHhcchhcCCC
Q 036939          107 DLAIDGADEVDP---------------------------------------GLAVPVEVVPVCWKFTANRFPDLFKDCGC  147 (215)
Q Consensus       107 Dl~iDGaDeVd~---------------------------------------K~plPVEV~P~a~~~v~~~l~~l~~~~G~  147 (215)
                      |+|||||||||+                                       +|||||||+||||.+|.++|+++    |+
T Consensus        81 D~~iDGADEvd~~l~lIKGGGgal~rEKivA~~a~~fI~IaD~sK~v~~LG~fplPVEVip~a~~~v~~~l~~l----G~  156 (228)
T 4gmk_A           81 DLTIDGADEISSDFQGIKGGGAALLYEKIVATKSNKNMWIVDESKMVDDLGQFPLPVEVIPYGSGTVFKRFEEK----GL  156 (228)
T ss_dssp             EEEEECCSEECTTSCEECCTTSCHHHHHHHHHHEEEEEEEEEGGGBCSSSCSSCEEEEECSTTHHHHHHHHHHT----TC
T ss_pred             ceEeccHHHhhhchhhhhcchHHHHHHHHHHHhhhheEEEeccccccCccCCeeEEEEEehhhHHHHHHHHHHc----CC
Confidence            999999999998                                       36999999999999999999997    99


Q ss_pred             ceeecc-----eeEecCCCEEEeecCCCCCCCHHHHHHHHccccCeEEeeeeccccccEEEEEcCCCeEEecC
Q 036939          148 VAKLRT-----CYEKHNGNCIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMFLDMATTVIIVGKLGVTIKNK  215 (215)
Q Consensus       148 ~~~lR~-----p~vTDnGN~IlD~~f~~~i~dp~~l~~~L~~i~pGVVe~GLF~~~a~~vivg~~~Gv~~~~~  215 (215)
                      .+++|+     |++|||||||+||+|.+ +.||.+|+++|++| |||||||||.++|+.+|+|++||+++++.
T Consensus       157 ~~~~R~~~~g~~~vTDnGN~IlD~~~~~-i~dp~~l~~~L~~i-~GVVe~GLF~~~a~~vivg~~dGv~~l~~  227 (228)
T 4gmk_A          157 NPEFRKNEDGSLLHTDSDNYIIDLHLGK-IENPKELGDYLINQ-VGVVEHGLFLDIVNTVIVGRQDGPEVLEA  227 (228)
T ss_dssp             CEEECBCTTSSBCCCTTSCEEEEECCSC-CSCHHHHHHHHHTS-TTEEEESEECSCCCEEEEEETTEEEEEEC
T ss_pred             ceeecccCCCCeEEecCCCEEEEecCCC-CCCHHHHHHHHhCC-CCEEeeeeecCCCCEEEEEeCCCcEEEec
Confidence            999997     79999999999999996 99999999999999 99999999999999999999999998863
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii} Back     alignment and structure
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans} Back     alignment and structure
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae} Back     alignment and structure
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A* Back     alignment and structure
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp} Back     alignment and structure
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A* Back     alignment and structure
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum} Back     alignment and structure
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A* Back     alignment and structure
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae} Back     alignment and structure
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1 Back     alignment and structure
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A* Back     alignment and structure
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5 Back     alignment and structure
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae} Back     alignment and structure
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8 Back     alignment and structure
>3efb_A Probable SOR-operon regulator; alpha-beta-alpha sandwich, center for structural genomics of infectious diseases, csgid, transcription; HET: MSE; 2.00A {Shigella flexneri 2A} SCOP: c.124.1.8 Back     alignment and structure
>3kv1_A Transcriptional repressor; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.70A {Vibrio fischeri} SCOP: c.124.1.0 Back     alignment and structure
>3nze_A Putative transcriptional regulator, sugar-binding; structural genomics, PSI-2, protein structure initiative; 1.70A {Arthrobacter aurescens} SCOP: c.124.1.0 Back     alignment and structure
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich, rossmann-like fold, structural genomics, PSI-2, protein structure initiative; HET: MSE G3H; 1.65A {Bacillus subtilis} SCOP: c.124.1.8 PDB: 3bxe_A* 3bxf_A* 3bxg_A* 3bxh_A* Back     alignment and structure
>2gnp_A Transcriptional regulator; structural genomics, MCSG, APC84799, streptococcus pneumonia PSI, protein structure initiative; 1.65A {Streptococcus pneumoniae} SCOP: c.124.1.8 Back     alignment and structure
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A Back     alignment and structure
>2r5f_A Transcriptional regulator, putative; transcription regulator, sugar-binding domain, structural GE PFAM04198, PSI-2; 2.10A {Pseudomonas syringae PV} SCOP: c.124.1.8 Back     alignment and structure
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} Back     alignment and structure
>1k6d_A Acetate COA-transferase alpha subunit; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Escherichia coli} SCOP: c.124.1.2 Back     alignment and structure
>3cdk_A Succinyl-COA:3-ketoacid-coenzyme A transferase subunit A; CO-expressed complex, hetero-tetramer, structural genomics, PSI-2; 2.59A {Bacillus subtilis} Back     alignment and structure
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis} Back     alignment and structure
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A* Back     alignment and structure
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5 Back     alignment and structure
>3rrl_A Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} Back     alignment and structure
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A* Back     alignment and structure
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A* Back     alignment and structure
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2 Back     alignment and structure
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis} Back     alignment and structure
>1poi_A Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.2 Back     alignment and structure
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5 Back     alignment and structure
>1fs5_A Glucosamine-6-phosphate deaminase; allosteric enzyme, entropic effects, aldose-ketose isomerase multiple conformers, isomerase; HET: 16G TLA; 1.73A {Escherichia coli} SCOP: c.124.1.1 PDB: 1cd5_A 1fqo_A* 1frz_A* 1dea_A* 1fs6_A 1fsf_A 1hor_A* 1hot_A* 2wu1_A* 1jt9_A Back     alignment and structure
>2bkx_A Glucosamine-6-phosphate deaminase; hydrolase, substrate inhibition, fructose-6-phosphate; HET: F6R; 1.4A {Bacillus subtilis} PDB: 2bkv_A* Back     alignment and structure
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5 Back     alignment and structure
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1 Back     alignment and structure
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis} Back     alignment and structure
>2ri0_A Glucosamine-6-phosphate deaminase; carbohydrate metabolism,; HET: BTB; 1.60A {Streptococcus mutans} PDB: 2ri1_A* Back     alignment and structure
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans} Back     alignment and structure
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A Back     alignment and structure
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A Back     alignment and structure
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii} Back     alignment and structure
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis} Back     alignment and structure
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2 Back     alignment and structure
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2 Back     alignment and structure
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A* Back     alignment and structure
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A Back     alignment and structure
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A* Back     alignment and structure
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 215
d1lk5a1149 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate 6e-21
d1uj4a1151 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate 7e-15
d1m0sa1147 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate 3e-14
d1o8ba272 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomera 6e-13
d1o8ba1124 c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphat 3e-11
d1m0sa272 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomera 4e-11
d1lk5a280 d.58.40.1 (A:131-210) D-ribose-5-phosphate isomera 5e-11
d1uj4a274 d.58.40.1 (A:132-205) D-ribose-5-phosphate isomera 2e-10
>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 149 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
domain: D-ribose-5-phosphate isomerase (RpiA), catalytic domain
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 82.9 bits (204), Expect = 6e-21
 Identities = 44/147 (29%), Positives = 72/147 (48%), Gaps = 35/147 (23%)

Query: 27  LTQDELKKIAANKSVEFVKSGMVVGLGTDSTATHAVDKIGELLHQGKLKNIVGIPTSKTT 86
           +  +E+KKIAA ++++F++  MV+GLGT ST  + +  +GE L +G++ +IVG+PTS   
Sbjct: 1   MNVEEMKKIAAKEALKFIEDDMVIGLGTGSTTAYFIKLLGEKLKRGEISDIVGVPTSYQA 60

Query: 87  HDQAVSLGIPLSDLDSHPVIDLAIDGADEVDPGLAV------------------------ 122
              A+   IP++ LD    ID+A+DGADEVDP L +                        
Sbjct: 61  KLLAIEHDIPIASLDQVDAIDVAVDGADEVDPNLNLIKGRGAALTMEKIIEYRAGTFIVL 120

Query: 123 -----------PVEVVPVCWKFTANRF 138
                        ++V V  +    + 
Sbjct: 121 VDERKLVDYLDIADIVIVGTREGVKKL 147
>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]} Length = 151 Back     information, alignment and structure
>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Haemophilus influenzae [TaxId: 727]} Length = 147 Back     information, alignment and structure
>d1o8ba2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Escherichia coli [TaxId: 562]} Length = 72 Back     information, alignment and structure
>d1o8ba1 c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Escherichia coli [TaxId: 562]} Length = 124 Back     information, alignment and structure
>d1m0sa2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Haemophilus influenzae [TaxId: 727]} Length = 72 Back     information, alignment and structure
>d1lk5a2 d.58.40.1 (A:131-210) D-ribose-5-phosphate isomerase (RpiA), lid domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 80 Back     information, alignment and structure
>d1uj4a2 d.58.40.1 (A:132-205) D-ribose-5-phosphate isomerase (RpiA), lid domain {Thermus thermophilus [TaxId: 274]} Length = 74 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query215
d1o8ba272 D-ribose-5-phosphate isomerase (RpiA), lid domain 99.96
d1lk5a280 D-ribose-5-phosphate isomerase (RpiA), lid domain 99.96
d1m0sa272 D-ribose-5-phosphate isomerase (RpiA), lid domain 99.95
d1uj4a274 D-ribose-5-phosphate isomerase (RpiA), lid domain 99.94
d1o8ba1124 D-ribose-5-phosphate isomerase (RpiA), catalytic d 99.89
d1uj4a1151 D-ribose-5-phosphate isomerase (RpiA), catalytic d 99.88
d1lk5a1149 D-ribose-5-phosphate isomerase (RpiA), catalytic d 99.84
d1m0sa1147 D-ribose-5-phosphate isomerase (RpiA), catalytic d 99.77
d2gnpa1262 Transcriptional regulator SP0247 {Streptococcus pn 96.67
d3efba1255 Sor-operon regulator SorC {Shigella flexneri [TaxI 96.63
d2okga1250 Central glycolytic gene regulator CggR {Bacillus s 96.56
d1vb5a_274 Putative eIF-2B subunit 2-like protein PH0440 {Pyr 95.5
d2r5fa1258 Transcriptional regulator PSPTO2395 {Pseudomonas s 95.46
d2o0ma1247 Transcriptional regulator EF1965 {Enterococcus fae 94.46
d2ahua2273 Putative enzyme YdiF N-terminal domain {Escherichi 93.41
d2g39a1221 Acetyl-CoA hydrolase (PA5445) {Pseudomonas aerugin 92.87
d1k6da_219 Acetate:CoA transferase alpha {Escherichia coli [T 91.91
d1i1ga280 LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} 91.54
d1ooya2242 Succinate:CoA transferase, N-terminal domain {Pig 90.46
d1poia_ 317 Glutaconate:CoA transferase alpha {Acidaminococcus 88.89
d1t5oa_340 Putative eIF-2B delta-subunit {Archaeon Archaeoglo 87.85
d1t9ka_340 Probable methylthioribose-1-phosphate isomerase TM 85.21
>d1o8ba2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: D-ribose-5-phosphate isomerase (RpiA), lid domain
family: D-ribose-5-phosphate isomerase (RpiA), lid domain
domain: D-ribose-5-phosphate isomerase (RpiA), lid domain
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=2.3e-30  Score=185.93  Aligned_cols=71  Identities=32%  Similarity=0.453  Sum_probs=69.3

Q ss_pred             CCCeeEEEccccHHHHHHHHhcchhcCCCceeecceeEecCCCEEEeecCCCCCCCHHHHHHHHccccCeEEeeeec
Q 036939          119 GLAVPVEVVPVCWKFTANRFPDLFKDCGCVAKLRTCYEKHNGNCIIDLYFKKDIGDMEVASNRILRLIAGVVEHGMF  195 (215)
Q Consensus       119 K~plPVEV~P~a~~~v~~~l~~l~~~~G~~~~lR~p~vTDnGN~IlD~~f~~~i~dp~~l~~~L~~i~pGVVe~GLF  195 (215)
                      ||||||||+||||++|.++|+++    |+++++|+|++|||||||+||+|.. +.||++|+++|++| |||||||||
T Consensus         2 ~FPlPvEV~p~~~~~v~~~l~~~----g~~~~~R~~~iTDnGN~IlD~~~~~-i~dp~~l~~~L~~i-pGVVe~GLF   72 (72)
T d1o8ba2           2 KFPLPVEVIPMARSAVARQLVKL----GGRPEYRQGVVTDNGNVILDVHGME-ILDPIAMENAINAI-PGVVTVGLF   72 (72)
T ss_dssp             SSCEEEEECGGGHHHHHHHHHHT----TCEEEECTTCCCTTSCEEEEEESCC-BSCHHHHHHHHHTS-TTEEEESEE
T ss_pred             CCCcCEEEehhHHHHHHHHHHHc----CCCcccCcceEecCCCEEEECCCCC-CCCHHHHHHHHhCC-CCEEecCCC
Confidence            79999999999999999999997    8999999999999999999999996 99999999999999 999999999
>d1lk5a2 d.58.40.1 (A:131-210) D-ribose-5-phosphate isomerase (RpiA), lid domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1m0sa2 d.58.40.1 (A:127-198) D-ribose-5-phosphate isomerase (RpiA), lid domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1uj4a2 d.58.40.1 (A:132-205) D-ribose-5-phosphate isomerase (RpiA), lid domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1o8ba1 c.124.1.4 (A:23-126,A:199-218) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2gnpa1 c.124.1.8 (A:56-317) Transcriptional regulator SP0247 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d3efba1 c.124.1.8 (A:11-265) Sor-operon regulator SorC {Shigella flexneri [TaxId: 623]} Back     information, alignment and structure
>d2okga1 c.124.1.8 (A:89-338) Central glycolytic gene regulator CggR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2r5fa1 c.124.1.8 (A:59-316) Transcriptional regulator PSPTO2395 {Pseudomonas syringae [TaxId: 317]} Back     information, alignment and structure
>d2o0ma1 c.124.1.8 (A:95-341) Transcriptional regulator EF1965 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d2ahua2 c.124.1.2 (A:4-276) Putative enzyme YdiF N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2g39a1 c.124.1.2 (A:3-223) Acetyl-CoA hydrolase (PA5445) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1k6da_ c.124.1.2 (A:) Acetate:CoA transferase alpha {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1i1ga2 d.58.4.2 (A:62-141) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1ooya2 c.124.1.2 (A:1-242) Succinate:CoA transferase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1poia_ c.124.1.2 (A:) Glutaconate:CoA transferase alpha {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure