Citrus Sinensis ID: 037057

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
MVGQISKIVTALVNRIVIWKHFYQVLWRSITPKALLPTQIMTISLYLHASAGAYAKNSIPSPGAGSFISYNCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH
cccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEccccccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHHHcccccccEEEEEcccccccccHHHHHHHHHHHHHHHcccccEEEEEEcccccccHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccEEEEEEccccccccccccccccccccEccccEEEEEEEEEEEcccHHHHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccc
MVGQISKIVTALVNRIVIWKHFYQVLWRsitpkallptQIMTISLYLHAsagayaknsipspgagsfisynckralpirvitvgkkrslGVQLVVDEYIGKLKYYCKVedlqlrsnpkntgdvkaqiKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGdagstgasrisfciggpyghgpkmrerANISIKLSSMVLNHQIALLVLVEQLYRSWTilkgqnyhh
MVGQISKIVTALVNRIVIWKHFYQVLWRSITPKALLPTQIMTISLYLHASAGAYAKNSIPSPGAGSFISYNCKRALPIRVitvgkkrslgvqLVVDEYIGKLKYYCKVedlqlrsnpkntgdvkaqikdedMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH
MVGQISKIVTALVNRIVIWKHFYQVLWRSITPKALLPTQIMTISLYLHASAGAYAKNSIPSPGAGSFISYNCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH
****ISKIVTALVNRIVIWKHFYQVLWRSITPKALLPTQIMTISLYLHASAGAYAKNSIPSPGAGSFISYNCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL****************EDMAVMNIISSDDWVVMLD*************************ISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKG*****
*****SKIVTALVNRIVIWKHFYQVLWRSITPKALLPTQIMTISLYLHASAGA*********GAGSFISYNCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQ********************AVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQN***
MVGQISKIVTALVNRIVIWKHFYQVLWRSITPKALLPTQIMTISLYLHASAGAYAKNSIPSPGAGSFISYNCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH
**GQISKIVTALVNRIVIWKHFYQVLWRSITPKALLPTQIMTISLYLHASAGAYAKNSIPSPGAGSFISYNCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQ****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVGQISKIVTALVNRIVIWKHFYQVLWRSITPKALLPTQIMTISLYLHASAGAYAKNSIPSPGAGSFISYNCKRALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query230 2.2.26 [Sep-21-2011]
Q9LXB4193 Putative RNA methyltransf yes no 0.826 0.984 0.637 1e-66
A0M0D0157 Ribosomal RNA large subun yes no 0.669 0.980 0.350 8e-23
Q1DCX5154 Ribosomal RNA large subun yes no 0.639 0.954 0.375 8e-22
A5FE53157 Ribosomal RNA large subun yes no 0.669 0.980 0.324 2e-21
A6H0Q2157 Ribosomal RNA large subun yes no 0.669 0.980 0.324 6e-21
A0PXE8159 Ribosomal RNA large subun yes no 0.669 0.968 0.341 6e-20
A3CRD3159 Ribosomal RNA large subun yes no 0.669 0.968 0.329 2e-19
A5MZP4159 Ribosomal RNA large subun yes no 0.669 0.968 0.322 4e-19
B9E3M4159 Ribosomal RNA large subun yes no 0.669 0.968 0.322 4e-19
Q11RC7155 Ribosomal RNA large subun yes no 0.660 0.980 0.329 1e-18
>sp|Q9LXB4|Y5620_ARATH Putative RNA methyltransferase At5g10620 OS=Arabidopsis thaliana GN=At5g10620 PE=3 SV=1 Back     alignment and function desciption
 Score =  252 bits (644), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 123/193 (63%), Positives = 154/193 (79%), Gaps = 3/193 (1%)

Query: 41  MTISLYLHASAGAYAKNSIPSP---GAGSFISYNCKRALPIRVITVGKKRSLGVQLVVDE 97
           M+IS+  ++       ++ P+P   G     +    RALPIRVITVGKKRS GV+L+VDE
Sbjct: 1   MSISVMANSHLNQPYASASPTPQEKGRTCRYAGQAVRALPIRVITVGKKRSEGVRLLVDE 60

Query: 98  YIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSE 157
           Y  KLK YC  ED  +RSNP+N  DV+AQ++DE++A+M +I SDDWVV+LDE G DI SE
Sbjct: 61  YKIKLKPYCSFEDSLVRSNPRNAQDVRAQVEDEEVAMMKLIGSDDWVVVLDERGRDIDSE 120

Query: 158 QMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLY 217
           QMAEL+GDAG++GASRISFCIGG YGHG ++R+RAN++I+LSSMVLNHQIAL+VL+EQLY
Sbjct: 121 QMAELLGDAGNSGASRISFCIGGAYGHGTQVRKRANVTIRLSSMVLNHQIALVVLMEQLY 180

Query: 218 RSWTILKGQNYHH 230
           RSWTILKGQNYHH
Sbjct: 181 RSWTILKGQNYHH 193

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -
>sp|A0M0D0|RLMH_GRAFK Ribosomal RNA large subunit methyltransferase H OS=Gramella forsetii (strain KT0803) GN=rlmH PE=3 SV=1 Back     alignment and function description
>sp|Q1DCX5|RLMH_MYXXD Ribosomal RNA large subunit methyltransferase H OS=Myxococcus xanthus (strain DK 1622) GN=rlmH PE=3 SV=1 Back     alignment and function description
>sp|A5FE53|RLMH_FLAJ1 Ribosomal RNA large subunit methyltransferase H OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=rlmH PE=3 SV=1 Back     alignment and function description
>sp|A6H0Q2|RLMH_FLAPJ Ribosomal RNA large subunit methyltransferase H OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=rlmH PE=3 SV=1 Back     alignment and function description
>sp|A0PXE8|RLMH_CLONN Ribosomal RNA large subunit methyltransferase H OS=Clostridium novyi (strain NT) GN=rlmH PE=3 SV=1 Back     alignment and function description
>sp|A3CRD3|RLMH_STRSV Ribosomal RNA large subunit methyltransferase H OS=Streptococcus sanguinis (strain SK36) GN=rlmH PE=3 SV=1 Back     alignment and function description
>sp|A5MZP4|RLMH_CLOK5 Ribosomal RNA large subunit methyltransferase H OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=rlmH PE=3 SV=1 Back     alignment and function description
>sp|B9E3M4|RLMH_CLOK1 Ribosomal RNA large subunit methyltransferase H OS=Clostridium kluyveri (strain NBRC 12016) GN=rlmH PE=3 SV=1 Back     alignment and function description
>sp|Q11RC7|RLMH_CYTH3 Ribosomal RNA large subunit methyltransferase H OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=rlmH PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query230
224121436189 predicted protein [Populus trichocarpa] 0.8 0.973 0.709 7e-71
356554389172 PREDICTED: putative RNA methyltransferas 0.7 0.936 0.777 5e-70
356561909183 PREDICTED: putative RNA methyltransferas 0.739 0.928 0.720 3e-68
388501268194 unknown [Lotus japonicus] 0.682 0.809 0.770 4e-68
359476001217 PREDICTED: putative RNA methyltransferas 0.682 0.723 0.757 1e-67
449437080182 PREDICTED: putative RNA methyltransferas 0.782 0.989 0.690 2e-67
296081778180 unnamed protein product [Vitis vinifera] 0.682 0.872 0.757 5e-67
297811167188 hypothetical protein ARALYDRAFT_487896 [ 0.769 0.941 0.681 5e-65
15238214193 putative RNA methyltransferase [Arabidop 0.826 0.984 0.637 8e-65
449437078202 PREDICTED: putative RNA methyltransferas 0.782 0.891 0.621 1e-63
>gi|224121436|ref|XP_002330827.1| predicted protein [Populus trichocarpa] gi|222872629|gb|EEF09760.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  272 bits (696), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 132/186 (70%), Positives = 150/186 (80%), Gaps = 2/186 (1%)

Query: 47  LHASAGAYAKNSIPSPGAGSFISYNCK--RALPIRVITVGKKRSLGVQLVVDEYIGKLKY 104
           + A A        PS G G    Y  +  RALPIR+ITVGKKRS GVQL+V+EY  KLK 
Sbjct: 4   ISACASTSCYTPPPSGGEGRLCKYTGQSVRALPIRIITVGKKRSAGVQLLVEEYTNKLKN 63

Query: 105 YCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGSEQMAELMG 164
           YC + DL +RSNP+N  D KAQ+ DED AVMN+I SDDWVV+LDE G DIGSEQMAEL+G
Sbjct: 64  YCSLHDLPIRSNPRNARDEKAQVDDEDKAVMNLIRSDDWVVLLDERGRDIGSEQMAELIG 123

Query: 165 DAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILK 224
           DAG+TGASR+SFCIGGPYGHG ++R+RANISI+LSSMVLNHQIALLVLVEQLYRSWTILK
Sbjct: 124 DAGNTGASRLSFCIGGPYGHGQQIRKRANISIRLSSMVLNHQIALLVLVEQLYRSWTILK 183

Query: 225 GQNYHH 230
           GQNYHH
Sbjct: 184 GQNYHH 189

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356554389|ref|XP_003545529.1| PREDICTED: putative RNA methyltransferase At5g10620-like [Glycine max] Back     alignment and taxonomy information
>gi|356561909|ref|XP_003549219.1| PREDICTED: putative RNA methyltransferase At5g10620-like [Glycine max] Back     alignment and taxonomy information
>gi|388501268|gb|AFK38700.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|359476001|ref|XP_002280753.2| PREDICTED: putative RNA methyltransferase At5g10620 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449437080|ref|XP_004136320.1| PREDICTED: putative RNA methyltransferase At5g10620-like isoform 2 [Cucumis sativus] gi|449505515|ref|XP_004162494.1| PREDICTED: putative RNA methyltransferase At5g10620-like isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|296081778|emb|CBI20783.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297811167|ref|XP_002873467.1| hypothetical protein ARALYDRAFT_487896 [Arabidopsis lyrata subsp. lyrata] gi|297319304|gb|EFH49726.1| hypothetical protein ARALYDRAFT_487896 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15238214|ref|NP_196624.1| putative RNA methyltransferase [Arabidopsis thaliana] gi|32171918|sp|Q9LXB4.1|Y5620_ARATH RecName: Full=Putative RNA methyltransferase At5g10620 gi|7671441|emb|CAB89381.1| putative protein [Arabidopsis thaliana] gi|332004189|gb|AED91572.1| putative RNA methyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449437078|ref|XP_004136319.1| PREDICTED: putative RNA methyltransferase At5g10620-like isoform 1 [Cucumis sativus] gi|449505511|ref|XP_004162493.1| PREDICTED: putative RNA methyltransferase At5g10620-like isoform 1 [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query230
TAIR|locus:2142479193 AT5G10620 [Arabidopsis thalian 0.821 0.979 0.654 5.5e-61
UNIPROTKB|P59730159 rlmH "Ribosomal RNA large subu 0.660 0.955 0.333 2.2e-18
TIGR_CMR|BA_5708159 BA_5708 "conserved hypothetica 0.660 0.955 0.333 2.2e-18
UNIPROTKB|Q747Q7153 rlmH "Ribosomal RNA large subu 0.665 1.0 0.316 9.5e-18
TIGR_CMR|GSU_3208153 GSU_3208 "conserved hypothetic 0.665 1.0 0.316 9.5e-18
UNIPROTKB|Q3AG04159 rlmH "Ribosomal RNA large subu 0.669 0.968 0.278 1.6e-17
TIGR_CMR|CHY_0058159 CHY_0058 "conserved hypothetic 0.669 0.968 0.278 1.6e-17
UNIPROTKB|Q724B0159 rlmH "Ribosomal RNA large subu 0.660 0.955 0.320 2.9e-16
UNIPROTKB|Q4K5G2155 rlmH "Ribosomal RNA large subu 0.647 0.961 0.316 1.1e-14
UNIPROTKB|Q48DL7155 rlmH "Ribosomal RNA large subu 0.647 0.961 0.296 2.7e-13
TAIR|locus:2142479 AT5G10620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 127/194 (65%), Positives = 155/194 (79%)

Query:    41 MTISLYLHASAGA-YAKNSIPSPGA-GSFISY--NCKRALPIRVITVGKKRSLGVQLVVD 96
             M+IS+  ++     YA  S P+P   G    Y     RALPIRVITVGKKRS GV+L+VD
Sbjct:     1 MSISVMANSHLNQPYASAS-PTPQEKGRTCRYAGQAVRALPIRVITVGKKRSEGVRLLVD 59

Query:    97 EYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDIGS 156
             EY  KLK YC  ED  +RSNP+N  DV+AQ++DE++A+M +I SDDWVV+LDE G DI S
Sbjct:    60 EYKIKLKPYCSFEDSLVRSNPRNAQDVRAQVEDEEVAMMKLIGSDDWVVVLDERGRDIDS 119

Query:   157 EQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQL 216
             EQMAEL+GDAG++GASRISFCIGG YGHG ++R+RAN++I+LSSMVLNHQIAL+VL+EQL
Sbjct:   120 EQMAELLGDAGNSGASRISFCIGGAYGHGTQVRKRANVTIRLSSMVLNHQIALVVLMEQL 179

Query:   217 YRSWTILKGQNYHH 230
             YRSWTILKGQNYHH
Sbjct:   180 YRSWTILKGQNYHH 193
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006364 "rRNA processing" evidence=IEA
GO:0008168 "methyltransferase activity" evidence=IEA
UNIPROTKB|P59730 rlmH "Ribosomal RNA large subunit methyltransferase H" [Bacillus anthracis (taxid:1392)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5708 BA_5708 "conserved hypothetical protein TIGR00246" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q747Q7 rlmH "Ribosomal RNA large subunit methyltransferase H" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_3208 GSU_3208 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|Q3AG04 rlmH "Ribosomal RNA large subunit methyltransferase H" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0058 CHY_0058 "conserved hypothetical protein TIGR00246" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|Q724B0 rlmH "Ribosomal RNA large subunit methyltransferase H" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] Back     alignment and assigned GO terms
UNIPROTKB|Q4K5G2 rlmH "Ribosomal RNA large subunit methyltransferase H" [Pseudomonas protegens Pf-5 (taxid:220664)] Back     alignment and assigned GO terms
UNIPROTKB|Q48DL7 rlmH "Ribosomal RNA large subunit methyltransferase H" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LXB4Y5620_ARATH2, ., 1, ., 1, ., -0.63730.82600.9844yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.01470075
hypothetical protein (189 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pg.C_LG_VIII0928
hypothetical protein (186 aa)
•  •  • 0.727
estExt_fgenesh4_pm.C_LG_X0783
delta-1-pyrroline-5-carboxylate synthetase (EC-2.7.2.11 1.2.1.41) (719 aa)
•       0.725
fgenesh4_pg.C_scaffold_7512000001
Predicted protein (204 aa)
•       0.615
gw1.X.4400.1
hypothetical protein (451 aa)
•  •    0.544
eugene3.00031274
aminoacyl-tRNA ligase (EC-6.1.1.2) (404 aa)
•  •    0.539
gw1.XI.1444.1
aminoacyl-tRNA ligase (EC-6.1.1.4) (889 aa)
•       0.534
gw1.I.3103.1
hypothetical protein (176 aa)
•  •    0.527
gw1.I.5803.1
hypothetical protein (150 aa)
•       0.482
eugene3.205270002
Predicted protein (127 aa)
•     • 0.473
fgenesh4_pg.C_scaffold_16349000001
Predicted protein (290 aa)
•       0.470

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query230
pfam02590154 pfam02590, SPOUT_MTase, Predicted SPOUT methyltran 7e-52
PRK00103157 PRK00103, PRK00103, rRNA large subunit methyltrans 2e-39
COG1576155 COG1576, COG1576, Uncharacterized conserved protei 2e-38
TIGR00246153 TIGR00246, tRNA_RlmH_YbeA, rRNA large subunit m3Ps 3e-21
>gnl|CDD|217127 pfam02590, SPOUT_MTase, Predicted SPOUT methyltransferase Back     alignment and domain information 
 Score =  164 bits (418), Expect = 7e-52
 Identities = 58/153 (37%), Positives = 92/153 (60%), Gaps = 1/153 (0%)

Query: 78  IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPK-NTGDVKAQIKDEDMAVMN 136
           IR+I VGK +   V+  + EY+ +L  YCK+E ++L    + +  D++A  + E   ++ 
Sbjct: 2   IRIIAVGKLKEKYVKDGIAEYLKRLSRYCKLELIELPDEKRGSAADIEAIKEKEGERILA 61

Query: 137 IISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISI 196
            I    +V+ LDE G ++ SE+ A+L+ D    G S I+F IGG  G   ++ +RAN  +
Sbjct: 62  AIPPGSYVIALDERGKELSSEEFAKLLEDLRLKGKSDITFVIGGSDGLSEEVLKRANEKL 121

Query: 197 KLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
            LS M L HQ+  L+L EQ+YR++TIL+G  YH
Sbjct: 122 SLSKMTLPHQLVRLLLAEQIYRAFTILRGHPYH 154

This family of proteins are predicted to be SPOUT methyltransferases. Length = 154
>gnl|CDD|234634 PRK00103, PRK00103, rRNA large subunit methyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|224492 COG1576, COG1576, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|129349 TIGR00246, tRNA_RlmH_YbeA, rRNA large subunit m3Psi methyltransferase RlmH Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 230
PF02590155 SPOUT_MTase: Predicted SPOUT methyltransferase; In 100.0
PRK00103157 rRNA large subunit methyltransferase; Provisional 100.0
COG1576155 Uncharacterized conserved protein [Function unknow 100.0
TIGR00246153 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltran 100.0
PRK04171222 ribosome biogenesis protein; Provisional 97.07
PF03587202 EMG1: EMG1/NEP1 methyltransferase; InterPro: IPR00 96.36
COG0336240 TrmD tRNA-(guanine-N1)-methyltransferase [Translat 95.74
COG1901197 Uncharacterized conserved protein [Function unknow 95.46
PRK00026244 trmD tRNA (guanine-N(1)-)-methyltransferase; Revie 95.35
TIGR00088233 trmD tRNA (guanine-N1)-methyltransferase. S-adenos 94.76
PRK14599222 trmD tRNA (guanine-N(1)-)-methyltransferase/unknow 94.58
PRK01037 357 trmD tRNA (guanine-N(1)-)-methyltransferase/unknow 93.96
PF14419173 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fus 93.86
COG1756223 Mra1 Uncharacterized conserved protein [Function u 93.75
PRK02135201 hypothetical protein; Provisional 92.41
PF04013199 Methyltrn_RNA_2: Putative SAM-dependent RNA methyl 92.37
PF00588142 SpoU_methylase: SpoU rRNA Methylase family; InterP 87.89
PF04407173 DUF531: Protein of unknown function (DUF531); Inte 87.29
KOG3073236 consensus Protein required for 18S rRNA maturation 86.73
cd05014128 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5 85.71
PF01637234 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 83.27
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases [] Back     alignment and domain information 
Probab=100.00  E-value=1.3e-62  Score=410.81  Aligned_cols=154  Identities=35%  Similarity=0.616  Sum_probs=129.4

Q ss_pred             ccEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCC-CCCcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCC
Q 037057           76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPK-NTGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDI  154 (230)
Q Consensus        76 MkI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~-~~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~l  154 (230)
                      |||+|++|||++++|++++++||.|||++|+++|++|+++.+. ...+.+..+++|+++|++++++++++|+||++||++
T Consensus         1 Mki~i~~vGk~k~~~~~~~~~eY~kRl~~~~~~e~~e~~~~~~~~~~~~~~~~~~E~~~il~~i~~~~~~i~Ld~~Gk~~   80 (155)
T PF02590_consen    1 MKIRIIAVGKLKEKFLKELIEEYLKRLSRYAKLEIIELKEEKIAKAQSIEKIKEKEGERILKKIPPNDYVILLDERGKQL   80 (155)
T ss_dssp             -EEEEEEESSS-SHHHHHHHHHHHHHHCTTSEEEEEEE------TCHHHHHHHHHHHHHHHCTSHTTSEEEEE-TTSEE-
T ss_pred             CEEEEEEEeccCcHHHHHHHHHHHHHcCccCceeEEEeccccccccccHHHHHHHHHHHHHhhccCCCEEEEEcCCCccC
Confidence            9999999999999999999999999999999999999997653 335677789999999999999999999999999999


Q ss_pred             ChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Q 037057          155 GSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH  229 (230)
Q Consensus       155 sS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfpHqLaRLILlEQIYRA~tIl~g~PYH  229 (230)
                      ||++||++|++|+++|.++++|+||||+|++++++++||.+||||+||||||||||||+|||||||||++|||||
T Consensus        81 sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~~~~~~~~a~~~lSLS~mTfpH~larlvL~EQiYRA~tI~~g~PYH  155 (155)
T PF02590_consen   81 SSEEFAKKLERWMNQGKSDIVFIIGGADGLSEEVRKRADEKLSLSKMTFPHQLARLVLLEQIYRAFTILNGHPYH  155 (155)
T ss_dssp             -HHHHHHHHHHHHHTTS-EEEEEE-BTTB--HHHHHH-SEEEES-SS---HHHHHHHHHHHHHHHHHHHTT-TT-
T ss_pred             ChHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHHhhcCceEEEecCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999

; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
>PRK00103 rRNA large subunit methyltransferase; Provisional Back     alignment and domain information
>COG1576 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH Back     alignment and domain information
>PRK04171 ribosome biogenesis protein; Provisional Back     alignment and domain information
>PF03587 EMG1: EMG1/NEP1 methyltransferase; InterPro: IPR005304 Members of this family are essential for 40S ribosomal biogenesis Back     alignment and domain information
>COG0336 TrmD tRNA-(guanine-N1)-methyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG1901 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK00026 trmD tRNA (guanine-N(1)-)-methyltransferase; Reviewed Back     alignment and domain information
>TIGR00088 trmD tRNA (guanine-N1)-methyltransferase Back     alignment and domain information
>PRK14599 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Provisional Back     alignment and domain information
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed Back     alignment and domain information
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP Back     alignment and domain information
>COG1756 Mra1 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK02135 hypothetical protein; Provisional Back     alignment and domain information
>PF04013 Methyltrn_RNA_2: Putative SAM-dependent RNA methyltransferase; InterPro: IPR007158 The proteins in this family are around 200 amino acids long with the exception of O29206 from SWISSPROT that has an additional 100 amino acids at its N terminus Back     alignment and domain information
>PF00588 SpoU_methylase: SpoU rRNA Methylase family; InterPro: IPR001537 The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases [, ] Back     alignment and domain information
>PF04407 DUF531: Protein of unknown function (DUF531); InterPro: IPR007501 This is a family of hypothetical archaeal proteins Back     alignment and domain information
>KOG3073 consensus Protein required for 18S rRNA maturation and 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd05014 SIS_Kpsf KpsF-like protein Back     alignment and domain information
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query230
1to0_A167 X-Ray Structure Of Northeast Structural Genomics Ta 5e-17
1o6d_A163 Crystal Structure Of A Hypothetical Protein Length 2e-16
1vh0_A161 Crystal Structure Of A Hypothetical Protein Length 2e-14
4fak_A163 Crystal Structure Of Orfx In Complex With S-adenosy 4e-14
1ns5_A155 X-Ray Structure Of Ybea From E.Coli. Northeast Stru 2e-08
>pdb|1TO0|A Chain A, X-Ray Structure Of Northeast Structural Genomics Target Protein Sr145 From Bacillus Subtilis Length = 167 Back     alignment and structure 
Iteration: 1

 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 87/156 (55%), Gaps = 4/156 (2%)
Query: 78  IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQL--RSNPKNTGDVKAQI-KD-EDMA 133
           I ++T+GK +   ++  ++EY  +L  Y K++ ++L     P+N  D   +I KD E   
Sbjct: 3   INIVTIGKLKEKYLKQGIEEYTKRLSAYAKIDIIELPDEKAPENLSDQDXKIIKDKEGDR 62
Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
           +++ IS D  V+ L   G    SE++A+ +    + G S+++F IGG  G    + +RA+
Sbjct: 63  ILSKISPDAHVIALAIEGKXKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDTVXKRAD 122
Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
             +  S     HQ+  L+LVEQ+YR++ I +G+ YH
Sbjct: 123 EKLSFSKXTFPHQLXRLILVEQIYRAFRINRGEPYH 158
>pdb|1O6D|A Chain A, Crystal Structure Of A Hypothetical Protein Length = 163 Back     alignment and structure
>pdb|1VH0|A Chain A, Crystal Structure Of A Hypothetical Protein Length = 161 Back     alignment and structure
>pdb|4FAK|A Chain A, Crystal Structure Of Orfx In Complex With S-adenosylmethionine Length = 163 Back     alignment and structure
>pdb|1NS5|A Chain A, X-Ray Structure Of Ybea From E.Coli. Northeast Structural Genomics Research Consortium (Nesg) Target Er45 Length = 155 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query230
1to0_A167 Hypothetical UPF0247 protein YYDA; structural geno 2e-47
4fak_A163 Ribosomal RNA large subunit methyltransferase H; a 7e-46
1o6d_A163 Hypothetical UPF0247 protein TM0844; structural ge 3e-45
1ns5_A155 Hypothetical protein YBEA; structural genomics, PS 1e-43
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3 Length = 167 Back     alignment and structure
 Score =  153 bits (388), Expect = 2e-47
 Identities = 48/157 (30%), Positives = 85/157 (54%), Gaps = 4/157 (2%)

Query: 78  IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVE--DLQLRSNPKNT--GDVKAQIKDEDMA 133
           I ++T+GK +   ++  ++EY  +L  Y K++  +L     P+N    D+K     E   
Sbjct: 3   INIVTIGKLKEKYLKQGIEEYTKRLSAYAKIDIIELPDEKAPENLSDQDMKIIKDKEGDR 62

Query: 134 VMNIISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERAN 193
           +++ IS D  V+ L   G    SE++A+ +    + G S+++F IGG  G    + +RA+
Sbjct: 63  ILSKISPDAHVIALAIEGKMKTSEELADTIDKLATYGKSKVTFVIGGSLGLSDTVMKRAD 122

Query: 194 ISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYHH 230
             +  S M   HQ+  L+LVEQ+YR++ I +G+ YH 
Sbjct: 123 EKLSFSKMTFPHQLMRLILVEQIYRAFRINRGEPYHK 159
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A Length = 163 Back     alignment and structure
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3 Length = 163 Back     alignment and structure
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3 Length = 155 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query230
4fak_A163 Ribosomal RNA large subunit methyltransferase H; a 100.0
1to0_A167 Hypothetical UPF0247 protein YYDA; structural geno 100.0
1ns5_A155 Hypothetical protein YBEA; structural genomics, PS 100.0
1o6d_A163 Hypothetical UPF0247 protein TM0844; structural ge 100.0
2qmm_A197 UPF0217 protein AF_1056; alpha/beta knot, SAM, str 96.93
3oii_A253 Essential for mitotic growth 1; EMG1, scnep1, spou 96.86
3aia_A211 UPF0217 protein MJ1640; DUF358, rRNA methyltransfe 96.64
3o7b_A244 Ribosome biogenesis NEP1 RNA methyltransferase; sp 96.33
3ief_A233 TRNA (guanine-N(1)-)-methyltransferase; niaid, ssg 96.12
3quv_A246 TRNA (guanine-N(1)-)-methyltransferase; sssgcid, s 95.9
3knu_A253 TRNA (guanine-N(1)-)-methyltransferase; niaid, ssg 95.81
3ky7_A269 TRNA (guanine-N(1)-)-methyltransferase; putative t 95.49
1oy5_A257 TRNA (guanine-N(1)-)-methyltransferase; structural 95.4
1ual_A274 TRNA (guanine-N(1)-)-methyltransferase; spout clas 94.6
2qwv_A208 UPF0217 protein VC_A1059; unknown function, struct 93.56
4h3z_A276 TRNA (guanine-N(1)-)-methyltransferase; structural 92.98
3kty_A173 Probable methyltransferase; alpha-beta-alpha sandw 91.57
3bbd_A205 Ribosome biogenesis protein NEP1-like; methyltrans 91.4
3ic6_A223 Putative methylase family protein; putative methyl 85.67
3onp_A249 TRNA/RRNA methyltransferase (SPOU); structural gen 84.26
3dcm_X192 AdoMet, uncharacterized protein TM_1570; trefoil k 83.63
3ilk_A244 Uncharacterized tRNA/RRNA methyltransferase HI038; 80.06
>4fak_A Ribosomal RNA large subunit methyltransferase H; alpha/beta methyltransferase rossmann fold, rRNA methylation rRNA, ribosomal protein; HET: SAM PG4; 1.70A {Staphylococcus aureus} PDB: 1vh0_A Back     alignment and structure
Probab=100.00  E-value=1e-64  Score=425.85  Aligned_cols=157  Identities=26%  Similarity=0.480  Sum_probs=148.5

Q ss_pred             cCccEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCC--CCC--cHHHHHHHHHHHHHhhcCCCCeEEEEeC
Q 037057           74 RALPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPK--NTG--DVKAQIKDEDMAVMNIISSDDWVVMLDE  149 (230)
Q Consensus        74 ~~MkI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~--~~~--~~~~~~~~E~e~Il~~i~~~~~vIlLDe  149 (230)
                      ..|+|+|+||||++++|++++++||.|||++||+++++|+++.+.  +.+  +.+.++++||++|++++++++++|+||+
T Consensus         3 ~~Mki~ii~VGk~k~~~~~~~i~eY~kRl~~~~~~ei~ei~~~k~~~~~s~~~~~~~~~~Eg~~il~~i~~~~~vI~LD~   82 (163)
T 4fak_A            3 EFMKITILAVGKLKEKYWKQAIAEYEKRLGPYTKIDIIEVPDEKAPENMSDKEIEQVKEKEGQRILAKIKPQSTVITLEI   82 (163)
T ss_dssp             SCCEEEEEEESCCCCHHHHHHHHHHHHHHTTTCEEEEEEECCCCCCTTCCHHHHHHHHHHHHHHHHHTCCTTSEEEEEEE
T ss_pred             cccEEEEEEecCcCcHHHHHHHHHHHHHccCcCCeEEEEecccccccccchhhHHHHHHHHHHHHHHhCCCCCEEEEEcC
Confidence            469999999999999999999999999999999999999997543  222  3456789999999999999999999999


Q ss_pred             CCCCCChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Q 037057          150 NGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH  229 (230)
Q Consensus       150 ~Gk~lsS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfpHqLaRLILlEQIYRA~tIl~g~PYH  229 (230)
                      +||++||++||++|++|+++|.++++|+||||+|++++++++||.+||||+|||||||+||||+|||||||||++|||||
T Consensus        83 ~Gk~~sS~~fA~~l~~~~~~g~~~i~FvIGG~~Gl~~~v~~rA~~~lSlS~mTfpHqL~RliL~EQlYRA~tIl~g~PYH  162 (163)
T 4fak_A           83 QGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQRSNYALSFSKMTFPHQMMRVVLIEQVYRAFKIMRGEAYH  162 (163)
T ss_dssp             EEEECCHHHHHHHHHHHHHTTCCEEEEEECBTTBCCHHHHHHCSEEEESCSSCCCHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred             CCCcCCHHHHHHHHHHHHhcCCcceEEEEECCCccCHHHHHhcCceEEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q 037057          230 H  230 (230)
Q Consensus       230 k  230 (230)
                      |
T Consensus       163 k  163 (163)
T 4fak_A          163 K  163 (163)
T ss_dssp             C
T ss_pred             C
Confidence            7
>1to0_A Hypothetical UPF0247 protein YYDA; structural genomics, unknown function, PSI, protein structure initiative; 2.50A {Bacillus subtilis} SCOP: c.116.1.3 Back     alignment and structure
>1ns5_A Hypothetical protein YBEA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 1.68A {Escherichia coli} SCOP: c.116.1.3 Back     alignment and structure
>1o6d_A Hypothetical UPF0247 protein TM0844; structural genomics, unknown function; 1.66A {Thermotoga maritima} SCOP: c.116.1.3 Back     alignment and structure
>2qmm_A UPF0217 protein AF_1056; alpha/beta knot, SAM, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.85A {Archaeoglobus fulgidus dsm 4304} SCOP: c.116.1.7 Back     alignment and structure
>3oii_A Essential for mitotic growth 1; EMG1, scnep1, spout, ribosome biogenesis, methyltransferase, processing, ribosomal protein; HET: SAH; 1.85A {Saccharomyces cerevisiae} PDB: 3oij_A* 3oin_A* 2v3j_A 2v3k_A* Back     alignment and structure
>3o7b_A Ribosome biogenesis NEP1 RNA methyltransferase; spout, rRNA processi transferase; HET: TYR SAH; 1.45A {Archaeoglobus fulgidus} Back     alignment and structure
>3ief_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infectious diseases; 2.50A {Bartonella henselae} Back     alignment and structure
>3quv_A TRNA (guanine-N(1)-)-methyltransferase; sssgcid, seattle structural genomics center for infectious D ssgcid, tRNA methyltransferase; 1.70A {Mycobacterium abscessus} Back     alignment and structure
>3knu_A TRNA (guanine-N(1)-)-methyltransferase; niaid, ssgcid, seattle structural genomics center for infect disease, tRNA methyl transferase; 2.25A {Anaplasma phagocytophilum} PDB: 4ig6_A* Back     alignment and structure
>3ky7_A TRNA (guanine-N(1)-)-methyltransferase; putative tRNA (guanine-7-)-methyltransferase, structural GEN infectious diseases; 2.35A {Staphylococcus aureus subsp} SCOP: c.116.1.0 Back     alignment and structure
>1oy5_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, TRMD, tRNA (M1G37) methyltransferase, B structure funded by NIH; 2.60A {Aquifex aeolicus} SCOP: c.116.1.4 Back     alignment and structure
>1ual_A TRNA (guanine-N(1)-)-methyltransferase; spout class, TRMD, tRNA(M1G37)methyltrans tRNA modification; HET: SAH; 1.80A {Haemophilus influenzae} SCOP: c.116.1.4 PDB: 1uak_A* 1uaj_A* 1uam_A* 3axz_A* 1p9p_A* Back     alignment and structure
>2qwv_A UPF0217 protein VC_A1059; unknown function, structural genomics, PSI- 2, protein structure initiative; 2.60A {Vibrio cholerae o1 biovar eltor str} SCOP: c.116.1.7 Back     alignment and structure
>4h3z_A TRNA (guanine-N(1)-)-methyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SAH; 2.15A {Burkholderia phymatum} PDB: 4h3y_A* Back     alignment and structure
>3kty_A Probable methyltransferase; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; 2.30A {Bordetella pertussis} Back     alignment and structure
>3bbd_A Ribosome biogenesis protein NEP1-like; methyltransferase, S-adenosyl-methionin adenosyl-homocysteine, rRNA processing; HET: MSE SAH; 2.15A {Methanocaldococcus jannaschii} SCOP: c.116.1.6 PDB: 3bbe_A 3bbh_A* Back     alignment and structure
>3ic6_A Putative methylase family protein; putative methylase family Pro structural genomics, PSI-2, protein structure initiative; 2.59A {Neisseria gonorrhoeae fa 1090} Back     alignment and structure
>3onp_A TRNA/RRNA methyltransferase (SPOU); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.90A {Rhodobacter sphaeroides} Back     alignment and structure
>3dcm_X AdoMet, uncharacterized protein TM_1570; trefoil knot, spout mtase, adoMet binding, transferase; HET: SAM; 2.00A {Thermotoga maritima} Back     alignment and structure
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004, methylase family protein, haemophilus influenzae R structural genomics; 2.01A {Haemophilus influenzae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 230
d1ns5a_153 c.116.1.3 (A:) Hypothetical protein YbeA {Escheric 5e-38
d1to0a_157 c.116.1.3 (A:) Hypothetical protein YydA {Bacillus 1e-35
d1o6da_147 c.116.1.3 (A:) Hypothetical protein TM0844 {Thermo 5e-35
d1vh0a_157 c.116.1.3 (A:) Hypothetical protein SAV0024/SA0023 2e-34
>d1ns5a_ c.116.1.3 (A:) Hypothetical protein YbeA {Escherichia coli [TaxId: 562]} Length = 153 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: YbeA-like
domain: Hypothetical protein YbeA
species: Escherichia coli [TaxId: 562]

 Score =  127 bits (321), Expect = 5e-38
 Identities = 39/152 (25%), Positives = 69/152 (45%), Gaps = 1/152 (0%)

Query: 78  IRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKNTGDVKAQIKDEDMAVMNI 137
           ++++ VG K    VQ    EY+ +       E +++ +  +       +I D++   M  
Sbjct: 3   LQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRGKNADIKRILDKEGEQMLA 62

Query: 138 ISSDDWVVMLDENGLDIGSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIK 197
            +  + +V LD  G    + Q+A  +      G   +S  IGGP G  P  +  A  S  
Sbjct: 63  AAGKNRIVTLDIPGKPWDTPQLAAELERWKLDG-RDVSLLIGGPEGLSPACKAAAEQSWS 121

Query: 198 LSSMVLNHQIALLVLVEQLYRSWTILKGQNYH 229
           LS++ L H +  +++ E LYR+W+I     YH
Sbjct: 122 LSALTLPHPLVRVLVAESLYRAWSITTNHPYH 153
>d1to0a_ c.116.1.3 (A:) Hypothetical protein YydA {Bacillus subtilis [TaxId: 1423]} Length = 157 Back     information, alignment and structure
>d1o6da_ c.116.1.3 (A:) Hypothetical protein TM0844 {Thermotoga maritima [TaxId: 2336]} Length = 147 Back     information, alignment and structure
>d1vh0a_ c.116.1.3 (A:) Hypothetical protein SAV0024/SA0023 {Staphylococcus aureus [TaxId: 1280]} Length = 157 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query230
d1ns5a_153 Hypothetical protein YbeA {Escherichia coli [TaxId 100.0
d1vh0a_157 Hypothetical protein SAV0024/SA0023 {Staphylococcu 100.0
d1to0a_157 Hypothetical protein YydA {Bacillus subtilis [TaxI 100.0
d1o6da_147 Hypothetical protein TM0844 {Thermotoga maritima [ 100.0
d2v3ka1227 Essential for mitotic growth 1, EMG1 {Saccharomyce 96.41
d1oy5a_232 tRNA(m1G37)-methyltransferase TrmD {Aquifex aeolic 95.54
d1uala_252 tRNA(m1G37)-methyltransferase TrmD {Haemophilus in 95.01
d2qwva1201 Uncharacterized protein VCA1059 {Vibrio cholerae [ 92.47
d2qmma1194 Uncharacterized protein AF1056 {Archaeoglobus fulg 87.74
>d1ns5a_ c.116.1.3 (A:) Hypothetical protein YbeA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: alpha/beta knot
superfamily: alpha/beta knot
family: YbeA-like
domain: Hypothetical protein YbeA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=8.5e-61  Score=392.37  Aligned_cols=152  Identities=26%  Similarity=0.441  Sum_probs=143.1

Q ss_pred             ccEEEEEEcCCCChHHHHHHHHHHhhhcCCCCceEEEeecCCCC-CCcHHHHHHHHHHHHHhhcCCCCeEEEEeCCCCCC
Q 037057           76 LPIRVITVGKKRSLGVQLVVDEYIGKLKYYCKVEDLQLRSNPKN-TGDVKAQIKDEDMAVMNIISSDDWVVMLDENGLDI  154 (230)
Q Consensus        76 MkI~IiaVGK~k~~~~~~~i~eY~KRL~~y~~leiieik~~~~~-~~~~~~~~~~E~e~Il~~i~~~~~vIlLDe~Gk~l  154 (230)
                      |+|+|+||||.+++|+++++++|.|||++|++++++|+++.+.. ..+.+..+++|++.|++.++ ++++|+|||+|+++
T Consensus         1 Mki~IiaIGk~~~~~~~~~i~~Y~KRl~~~~~~~~iei~~~~~~~~~~~~~~~~~E~~~il~~~~-~~~~I~LDe~Gk~~   79 (153)
T d1ns5a_           1 MKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRGKNADIKRILDKEGEQMLAAAG-KNRIVTLDIPGKPW   79 (153)
T ss_dssp             CCEEEEEECSCCCHHHHHHHHHHHTTSCTTSCEEEEEECCCCCCTTCCHHHHHHHHHHHHHHHHT-TSEEEEEEEEEECC
T ss_pred             CeEEEEEEcCcCcHHHHHHHHHHHHHcCCcCCeEEEEecCccCCcchhHHHHHHHHHHHHHhhcc-CCeEEEeecccccc
Confidence            99999999999999999999999999999999999999865432 24567788999999999986 46899999999999


Q ss_pred             ChHHHHHHHhhhhhcCCceEEEEEeCCCCCCHHHHhcccceEEeecCCCcHHHHHHHHHHHHHHHHHHhcCCCCC
Q 037057          155 GSEQMAELMGDAGSTGASRISFCIGGPYGHGPKMRERANISIKLSSMVLNHQIALLVLVEQLYRSWTILKGQNYH  229 (230)
Q Consensus       155 sS~efA~~L~~~~~~G~~~i~FiIGGa~Gls~~v~~rAd~~LSLS~mTfpHqLaRLILlEQIYRA~tIl~g~PYH  229 (230)
                      ||++||++|++|+++| ++++|+||||+|++++++++||..||||+|||||+||||||+||||||+||++|||||
T Consensus        80 sS~~fA~~l~~~~~~g-~~i~fiIGGa~G~~~~~~~~a~~~lsls~mT~pH~lar~~l~EQlYRa~~I~~~~pYH  153 (153)
T d1ns5a_          80 DTPQLAAELERWKLDG-RDVSLLIGGPEGLSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYRAWSITTNHPYH  153 (153)
T ss_dssp             CHHHHHHHHHHHHHHC-SCEEEEECBTTBCCHHHHHHCSEEECCCSSCCCHHHHHHHHHHHHHHHHHHHTTCTTC
T ss_pred             ChHHHHHHHHHHhhcc-CcEEEEEEcCCCCCHHHHHhhCcEEecccCCchHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            9999999999999998 6799999999999999999999999999999999999999999999999999999999
>d1vh0a_ c.116.1.3 (A:) Hypothetical protein SAV0024/SA0023 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1to0a_ c.116.1.3 (A:) Hypothetical protein YydA {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1o6da_ c.116.1.3 (A:) Hypothetical protein TM0844 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2v3ka1 c.116.1.6 (A:25-251) Essential for mitotic growth 1, EMG1 {Saccharomyces cerevisiae [TaxId: 4932]} Back     information, alignment and structure
>d1oy5a_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1uala_ c.116.1.4 (A:) tRNA(m1G37)-methyltransferase TrmD {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2qwva1 c.116.1.7 (A:5-205) Uncharacterized protein VCA1059 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2qmma1 c.116.1.7 (A:95-288) Uncharacterized protein AF1056 {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure