Citrus Sinensis ID: 037077

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
NLEAVQQFGKLWQLEPEDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKVNDLCGIELCYKCVHFTHLVARCTNIINLNSEDAKYVINVKQIAK
Secondary Structure (PSIPRED)
cHHHHHHHHHcccccccHHHHcccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEccccccccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHcccHcccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHEEEEcEEEccccccccEEEEHHHHcc
Coil and Loop (DISEMBL)
NLEAVQQFGKlwqlepedeikeeknprppdeddIALLKTCIRKLsflnpsfslgpystSIKKMEKEIKNMAKKVNDLCGIELCYKCVHFTHLVARCTNIINLNSEDAKYVINVKQIAK
Flexible Loop (DISEMBL)
nleavqqfgklwqlepedeikeeknprppdedDIALLKTCIRKLsflnpsfslgpysTSIKKMEKEIKNMAKKVNDLCGIELCYKCVHFTHLVARCTNIInlnsedakyvINVKQIAK
Low Complexity Region (SEG)
NLEAVQQFGKLWQLEPEDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKVNDLCGIELCYKCVHFTHLVARCTNIINLNSEDAKYVINVKQIAK
Disordered region (IsUnstruct)
*********************************IALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKVNDLCGIELCYKCVHFTHLVARCTNIINLNSEDAKYVINVK****
Disordered Region (DISOPRED)
*****************************DEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKVNDLCGIELCYKCVHFTHLVARCTNIINLNSEDAKYVINVKQIA*
Disordered Region (DISEMBL)
NLEAVQQFGKLWQLEPED***********DEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKVNDLCGIELCYKCVHFTHLVARCTNIINLNSEDAKYVINVKQIAK
Disordered Region (DISPRO)
NLEAVQQFGKLWQLEPE*EIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKVNDLCGIELCYKCVHFTHLVARCTNIINLNSEDAKYVINVKQIAK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
NLEAVQQFGKLWQLEPEDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSxxxxxxxxxxxxxxxxxxxxxELCYKCVHFTHLVARCTNIINLNSEDAKYVINVKQIAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
Q9FXT9	426	26S protease regulatory s	yes	no	0.788	0.218	0.561	1e-25
O64982	425	26S protease regulatory s	N/A	no	0.779	0.216	0.578	3e-25
Q41365	426	26S protease regulatory s	N/A	no	0.796	0.220	0.549	1e-24
Q9SSB5	426	26S protease regulatory s	yes	no	0.771	0.213	0.546	3e-24
Q86JA1	428	26S protease regulatory s	yes	no	0.771	0.212	0.411	2e-13
P46471	433	26S protease regulatory s	yes	no	0.805	0.219	0.382	2e-11
Q4R4R0	433	26S protease regulatory s	N/A	no	0.762	0.207	0.403	5e-11
P35998	433	26S protease regulatory s	no	no	0.762	0.207	0.403	5e-11
Q5E9F9	433	26S protease regulatory s	yes	no	0.762	0.207	0.403	5e-11
Q63347	433	26S protease regulatory s	yes	no	0.762	0.207	0.403	5e-11

>sp|Q9FXT9|PRS7_ORYSJ 26S protease regulatory subunit 7 OS=Oryza sativa subsp. japonica GN=RPT1A PE=2 SV=1

 Score =  114 bits (286), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 68/121 (56%), Positives = 78/121 (64%), Gaps = 28/121 (23%)

Query: 15  EPEDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKV 74
           EPED+I  EKNPRP DEDDIALLKT           + LGPYSTSIKK+EKEIK MAKK+
Sbjct: 4   EPEDDIMNEKNPRPLDEDDIALLKT-----------YGLGPYSTSIKKVEKEIKEMAKKI 52

Query: 75  NDLCGIELC---------YKCVHFTHL--------VARCTNIINLNSEDAKYVINVKQIA 117
           NDLCGI+           +  V    +        VARCT II+ N++DAKYVINVKQIA
Sbjct: 53  NDLCGIKESDTGLAPPSQWDLVSDKQMMQEEQPLQVARCTKIISPNTDDAKYVINVKQIA 112

Query: 118 K 118
           K
Sbjct: 113 K 113

The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|O64982|PRS7_PRUPE 26S protease regulatory subunit 7 OS=Prunus persica GN=RPT1 PE=2 SV=1

 Score =  113 bits (283), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 70/121 (57%), Positives = 78/121 (64%), Gaps = 29/121 (23%)

Query: 15  EPEDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKV 74
           EPED IK+EKNPRP DEDDIALLKT           + LGPYST IKK EKE+K++AKKV
Sbjct: 4   EPED-IKDEKNPRPLDEDDIALLKT-----------YGLGPYSTHIKKAEKEVKDLAKKV 51

Query: 75  NDLCGIELC---------YKCVHFTHL--------VARCTNIINLNSEDAKYVINVKQIA 117
           NDLCGI+           +  V    +        VARCT IIN NSEDAKYVINVKQIA
Sbjct: 52  NDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIA 111

Query: 118 K 118
           K
Sbjct: 112 K 112

The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex.

Prunus persica (taxid: 3760)

>sp|Q41365|PRS7_SPIOL 26S protease regulatory subunit 7 OS=Spinacia oleracea GN=RPT1 PE=2 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/122 (54%), Positives = 79/122 (64%), Gaps = 28/122 (22%)

Query: 14  LEPEDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKK 73
           +E ED++K+EKNPRP DEDDIALLKT           + LGPYS SIKK+EKEIK+M+KK
Sbjct: 3   IEHEDDLKDEKNPRPLDEDDIALLKT-----------YGLGPYSASIKKVEKEIKDMSKK 51

Query: 74  VNDLCGIELC---------YKCVHFTHL--------VARCTNIINLNSEDAKYVINVKQI 116
           VNDL GI+           +  V    +        VARCT IIN N+EDAKYVINVKQI
Sbjct: 52  VNDLIGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNTEDAKYVINVKQI 111

Query: 117 AK 118
           AK
Sbjct: 112 AK 113

The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex.

Spinacia oleracea (taxid: 3562)

>sp|Q9SSB5|PRS7A_ARATH 26S protease regulatory subunit 7 homolog A OS=Arabidopsis thaliana GN=RPT1A PE=2 SV=1

 Score =  110 bits (274), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 65/119 (54%), Positives = 77/119 (64%), Gaps = 28/119 (23%)

Query: 17  EDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKVND 76
           EDEI++EKNPRP DEDDIALLKT           + LGPYS  IKK+EKEIK++AKK+ND
Sbjct: 6   EDEIRDEKNPRPLDEDDIALLKT-----------YGLGPYSAPIKKVEKEIKDLAKKIND 54

Query: 77  LCGIELC---------YKCVHFTHL--------VARCTNIINLNSEDAKYVINVKQIAK 118
           LCGI+           +  V    +        VARCT II+ N+EDAKYVINVKQIAK
Sbjct: 55  LCGIKESDTGLAPPSQWDLVSDKQMMQEEQPLQVARCTKIISPNTEDAKYVINVKQIAK 113

The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex.

Arabidopsis thaliana (taxid: 3702)

>sp|Q86JA1|PRS7_DICDI 26S protease regulatory subunit 7 OS=Dictyostelium discoideum GN=psmC2 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 49/119 (41%), Positives = 63/119 (52%), Gaps = 28/119 (23%)

Query: 17  EDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKVND 76
           EDE+  E  P   DE DIALLK           S+ +GPYS SI+ +E++IK M  KVN+
Sbjct: 8   EDELLNETAPVALDEGDIALLK-----------SYGVGPYSKSIRILEEDIKKMTSKVNE 56

Query: 77  LCGIELCYKCV------------HFTH-----LVARCTNIINLNSEDAKYVINVKQIAK 118
           LCGI+     +               H      VARCT II++   +AKY+I VKQIAK
Sbjct: 57  LCGIKESDTGIGPPSQWDLVVDKTSAHEEPPLQVARCTKIIDVGKPNAKYIITVKQIAK 115

The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex.

Dictyostelium discoideum (taxid: 44689)

>sp|P46471|PRS7_MOUSE 26S protease regulatory subunit 7 OS=Mus musculus GN=Psmc2 PE=1 SV=5

 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 47/123 (38%), Positives = 64/123 (52%), Gaps = 28/123 (22%)

Query: 13  QLEPEDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAK 72
           Q + ++E K++K  R  DE DIALLKT           +    YS  IK++E +I+ + K
Sbjct: 9   QRKTKEEEKDDKPIRALDEGDIALLKT-----------YGQSTYSRQIKQVEDDIQQLLK 57

Query: 73  KVNDLCGIELCYKCVHFTHL-----------------VARCTNIINLNSEDAKYVINVKQ 115
           K+N+L GI+     +    L                 VARCT IIN +SED KY+INVKQ
Sbjct: 58  KINELTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQ 117

Query: 116 IAK 118
            AK
Sbjct: 118 FAK 120

The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex.

Mus musculus (taxid: 10090)

>sp|Q4R4R0|PRS7_MACFA 26S protease regulatory subunit 7 OS=Macaca fascicularis GN=PSMC2 PE=2 SV=3

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/119 (40%), Positives = 62/119 (52%), Gaps = 29/119 (24%)

Query: 17  EDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKVND 76
           EDE K++K  R  DE DIALLKT           +    YS  IK++E +I+ + KK+N+
Sbjct: 14  EDE-KDDKPIRALDEGDIALLKT-----------YGQSTYSRQIKQVEDDIQQLLKKINE 61

Query: 77  LCGIELCYKCVHFTHL-----------------VARCTNIINLNSEDAKYVINVKQIAK 118
           L GI+     +    L                 VARCT IIN +SED KY+INVKQ AK
Sbjct: 62  LTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAK 120

The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex.

Macaca fascicularis (taxid: 9541)

>sp|P35998|PRS7_HUMAN 26S protease regulatory subunit 7 OS=Homo sapiens GN=PSMC2 PE=1 SV=3

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/119 (40%), Positives = 62/119 (52%), Gaps = 29/119 (24%)

Query: 17  EDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKVND 76
           EDE K++K  R  DE DIALLKT           +    YS  IK++E +I+ + KK+N+
Sbjct: 14  EDE-KDDKPIRALDEGDIALLKT-----------YGQSTYSRQIKQVEDDIQQLLKKINE 61

Query: 77  LCGIELCYKCVHFTHL-----------------VARCTNIINLNSEDAKYVINVKQIAK 118
           L GI+     +    L                 VARCT IIN +SED KY+INVKQ AK
Sbjct: 62  LTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAK 120

The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex. In case of HIV-1 infection, positive modulator of Tat-mediated transactivation.

Homo sapiens (taxid: 9606)

>sp|Q5E9F9|PRS7_BOVIN 26S protease regulatory subunit 7 OS=Bos taurus GN=PSMC2 PE=2 SV=3

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/119 (40%), Positives = 62/119 (52%), Gaps = 29/119 (24%)

Query: 17  EDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKVND 76
           EDE K++K  R  DE DIALLKT           +    YS  IK++E +I+ + KK+N+
Sbjct: 14  EDE-KDDKPIRALDEGDIALLKT-----------YGQSTYSRQIKQVEDDIQQLLKKINE 61

Query: 77  LCGIELCYKCVHFTHL-----------------VARCTNIINLNSEDAKYVINVKQIAK 118
           L GI+     +    L                 VARCT IIN +SED KY+INVKQ AK
Sbjct: 62  LTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAK 120

The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex.

Bos taurus (taxid: 9913)

>sp|Q63347|PRS7_RAT 26S protease regulatory subunit 7 OS=Rattus norvegicus GN=Psmc2 PE=1 SV=3

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/119 (40%), Positives = 62/119 (52%), Gaps = 29/119 (24%)

Query: 17  EDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKVND 76
           EDE K++K  R  DE DIALLKT           +    YS  IK++E +I+ + KK+N+
Sbjct: 14  EDE-KDDKPIRALDEGDIALLKT-----------YGQSTYSRQIKQVEDDIQQLLKKINE 61

Query: 77  LCGIELCYKCVHFTHL-----------------VARCTNIINLNSEDAKYVINVKQIAK 118
           L GI+     +    L                 VARCT IIN +SED KY+INVKQ AK
Sbjct: 62  LTGIKESDTGLAPPALWDLAADKQTLQSEQPLQVARCTKIINADSEDPKYIINVKQFAK 120

The 26S protease is involved in the ATP-dependent degradation of ubiquitinated proteins. The regulatory (or ATPase) complex confers ATP dependency and substrate specificity to the 26S complex.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
449436203	426	PREDICTED: 26S protease regulatory subun	0.788	0.218	0.595	7e-26
356520182	426	PREDICTED: 26S protease regulatory subun	0.796	0.220	0.581	4e-25
357514383	411	26S protease regulatory subunit [Medicag	0.796	0.228	0.581	4e-25
363806968	426	uncharacterized protein LOC100808239 [Gl	0.788	0.218	0.586	6e-25
225441955	426	PREDICTED: 26S protease regulatory subun	0.788	0.218	0.586	9e-25
363807752	426	uncharacterized protein LOC100796358 [Gl	0.788	0.218	0.586	2e-24
242053915	426	hypothetical protein SORBIDRAFT_03g03050	0.788	0.218	0.570	2e-24
115466876	426	Os06g0192600 [Oryza sativa Japonica Grou	0.788	0.218	0.561	5e-24
413939236	349	hypothetical protein ZEAMMB73_970549 [Ze	0.788	0.266	0.561	6e-24
413939235	270	hypothetical protein ZEAMMB73_970549 [Ze	0.788	0.344	0.561	7e-24

>gi|449436203|ref|XP_004135883.1| PREDICTED: 26S protease regulatory subunit 7-like [Cucumis sativus] gi|449491091|ref|XP_004158796.1| PREDICTED: 26S protease regulatory subunit 7-like [Cucumis sativus]

 Score =  121 bits (303), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 72/121 (59%), Positives = 80/121 (66%), Gaps = 28/121 (23%)

Query: 15  EPEDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKV 74
           +PEDEIK+EKNPRP DEDDIALLKT           + LGPYST IKK+EKEIK+MAKKV
Sbjct: 4   DPEDEIKDEKNPRPLDEDDIALLKT-----------YGLGPYSTYIKKVEKEIKDMAKKV 52

Query: 75  NDLCGIELC---------YKCVHFTHL--------VARCTNIINLNSEDAKYVINVKQIA 117
           NDLCGI+           +  V    +        VARCT IIN NSEDAKYVINVKQIA
Sbjct: 53  NDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIA 112

Query: 118 K 118
           K
Sbjct: 113 K 113

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520182|ref|XP_003528743.1| PREDICTED: 26S protease regulatory subunit 7-like [Glycine max] gi|356559376|ref|XP_003547975.1| PREDICTED: 26S protease regulatory subunit 7-like [Glycine max]

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 71/122 (58%), Positives = 80/122 (65%), Gaps = 28/122 (22%)

Query: 14  LEPEDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKK 73
           +E ED++K+EKNPRP DEDDIALLKT           + LGPYSTSIKK EKEIK+MAKK
Sbjct: 3   IEHEDDLKDEKNPRPLDEDDIALLKT-----------YGLGPYSTSIKKAEKEIKDMAKK 51

Query: 74  VNDLCGIELC---------YKCVHFTHL--------VARCTNIINLNSEDAKYVINVKQI 116
           VNDLCGI+           +  V    +        VARCT IIN NSEDAKYVINVKQI
Sbjct: 52  VNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQI 111

Query: 117 AK 118
           AK
Sbjct: 112 AK 113

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357514383|ref|XP_003627480.1| 26S protease regulatory subunit [Medicago truncatula] gi|355521502|gb|AET01956.1| 26S protease regulatory subunit [Medicago truncatula]

 Score =  118 bits (296), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 71/122 (58%), Positives = 81/122 (66%), Gaps = 28/122 (22%)

Query: 14  LEPEDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKK 73
           ++ EDE+K+EKNPRP DEDDIALLKT           + LGPYSTSIKK+EKEIK+MAKK
Sbjct: 3   IDHEDELKDEKNPRPLDEDDIALLKT-----------YGLGPYSTSIKKVEKEIKDMAKK 51

Query: 74  VNDLCGIELC---------YKCVHFTHL--------VARCTNIINLNSEDAKYVINVKQI 116
           VNDLCGI+           +  V    +        VARCT IIN NSEDAKYVINVKQI
Sbjct: 52  VNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQI 111

Query: 117 AK 118
           AK
Sbjct: 112 AK 113

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363806968|ref|NP_001242057.1| uncharacterized protein LOC100808239 [Glycine max] gi|255641390|gb|ACU20972.1| unknown [Glycine max]

 Score =  117 bits (294), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 71/121 (58%), Positives = 79/121 (65%), Gaps = 28/121 (23%)

Query: 15  EPEDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKV 74
           E ED+ K+EKNPRP DEDDIALLKT           + LGPYSTSIKK+EKEIK+MAKKV
Sbjct: 4   EHEDDFKDEKNPRPLDEDDIALLKT-----------YGLGPYSTSIKKVEKEIKDMAKKV 52

Query: 75  NDLCGIELC---------YKCVHFTHL--------VARCTNIINLNSEDAKYVINVKQIA 117
           NDLCGI+           +  V    +        VARCT IIN NSEDAKYVINVKQIA
Sbjct: 53  NDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIA 112

Query: 118 K 118
           K
Sbjct: 113 K 113

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441955|ref|XP_002263826.1| PREDICTED: 26S protease regulatory subunit 7 [Vitis vinifera] gi|297742918|emb|CBI35785.3| unnamed protein product [Vitis vinifera]

 Score =  117 bits (293), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 71/121 (58%), Positives = 77/121 (63%), Gaps = 28/121 (23%)

Query: 15  EPEDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKV 74
           EPEDEIK+EKNPRP DEDDIALLKT           + LGPYS  IKK EKEIK MAKKV
Sbjct: 4   EPEDEIKDEKNPRPLDEDDIALLKT-----------YGLGPYSAPIKKTEKEIKEMAKKV 52

Query: 75  NDLCGIELC---------YKCVHFTHL--------VARCTNIINLNSEDAKYVINVKQIA 117
           NDLCGI+           +  V    +        VARCT II+ NSEDAKYVINVKQIA
Sbjct: 53  NDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISPNSEDAKYVINVKQIA 112

Query: 118 K 118
           K
Sbjct: 113 K 113

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807752|ref|NP_001242685.1| uncharacterized protein LOC100796358 [Glycine max] gi|255639927|gb|ACU20256.1| unknown [Glycine max]

 Score =  116 bits (291), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 71/121 (58%), Positives = 77/121 (63%), Gaps = 28/121 (23%)

Query: 15  EPEDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKV 74
           E ED+ K+EKNPRP DEDDIALLKT           + LGPYSTSIKK EKEIK MAKKV
Sbjct: 4   EHEDDFKDEKNPRPLDEDDIALLKT-----------YGLGPYSTSIKKAEKEIKEMAKKV 52

Query: 75  NDLCGIELC---------YKCVHFTHL--------VARCTNIINLNSEDAKYVINVKQIA 117
           NDLCGI+           +  V    +        VARCT IIN NSEDAKYVINVKQIA
Sbjct: 53  NDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIA 112

Query: 118 K 118
           K
Sbjct: 113 K 113

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242053915|ref|XP_002456103.1| hypothetical protein SORBIDRAFT_03g030500 [Sorghum bicolor] gi|241928078|gb|EES01223.1| hypothetical protein SORBIDRAFT_03g030500 [Sorghum bicolor]

 Score =  116 bits (290), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 69/121 (57%), Positives = 78/121 (64%), Gaps = 28/121 (23%)

Query: 15  EPEDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKV 74
           EPEDEI  EKNPRP DEDDIALLKT           + LGPYSTSIKK+EKEIK MAKK+
Sbjct: 4   EPEDEIMNEKNPRPLDEDDIALLKT-----------YGLGPYSTSIKKVEKEIKEMAKKI 52

Query: 75  NDLCGIELC---------YKCVHFTHL--------VARCTNIINLNSEDAKYVINVKQIA 117
           NDLCGI+           +  V    +        VARCT II+ N++DAKYVINVKQIA
Sbjct: 53  NDLCGIKESDTGLAPPSQWDLVSDKQMMQEEQPLQVARCTKIISPNTDDAKYVINVKQIA 112

Query: 118 K 118
           K
Sbjct: 113 K 113

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115466876|ref|NP_001057037.1| Os06g0192600 [Oryza sativa Japonica Group] gi|226497700|ref|NP_001141915.1| uncharacterized protein LOC100274064 [Zea mays] gi|226499298|ref|NP_001140694.1| uncharacterized protein LOC100272769 [Zea mays] gi|242066762|ref|XP_002454670.1| hypothetical protein SORBIDRAFT_04g035230 [Sorghum bicolor] gi|28558165|sp|Q9FXT9.1|PRS7_ORYSJ RecName: Full=26S protease regulatory subunit 7; AltName: Full=26S proteasome AAA-ATPase subunit RPT1; AltName: Full=26S proteasome subunit 7; AltName: Full=Regulatory particle triple-A ATPase subunit 1 gi|11094190|dbj|BAB17624.1| 26S proteasome regulatory particle triple-A ATPase subunit1 [Oryza sativa Japonica Group] gi|47497255|dbj|BAD19299.1| 26S proteasome regulatory particle triple-A ATPase subunit1 [Oryza sativa Japonica Group] gi|51090788|dbj|BAD35266.1| 26S protease regulatory subunit 7 [Oryza sativa Japonica Group] gi|51091125|dbj|BAD35822.1| 26S protease regulatory subunit 7 [Oryza sativa Japonica Group] gi|113595077|dbj|BAF18951.1| Os06g0192600 [Oryza sativa Japonica Group] gi|125541384|gb|EAY87779.1| hypothetical protein OsI_09197 [Oryza sativa Indica Group] gi|125554381|gb|EAY99986.1| hypothetical protein OsI_21990 [Oryza sativa Indica Group] gi|125583923|gb|EAZ24854.1| hypothetical protein OsJ_08636 [Oryza sativa Japonica Group] gi|194700610|gb|ACF84389.1| unknown [Zea mays] gi|194706436|gb|ACF87302.1| unknown [Zea mays] gi|215692740|dbj|BAG88160.1| unnamed protein product [Oryza sativa Japonica Group] gi|215697824|dbj|BAG92017.1| unnamed protein product [Oryza sativa Japonica Group] gi|241934501|gb|EES07646.1| hypothetical protein SORBIDRAFT_04g035230 [Sorghum bicolor] gi|413924303|gb|AFW64235.1| hypothetical protein ZEAMMB73_507184 [Zea mays] gi|413939237|gb|AFW73788.1| hypothetical protein ZEAMMB73_970549 [Zea mays]

 Score =  114 bits (286), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 68/121 (56%), Positives = 78/121 (64%), Gaps = 28/121 (23%)

Query: 15  EPEDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKV 74
           EPED+I  EKNPRP DEDDIALLKT           + LGPYSTSIKK+EKEIK MAKK+
Sbjct: 4   EPEDDIMNEKNPRPLDEDDIALLKT-----------YGLGPYSTSIKKVEKEIKEMAKKI 52

Query: 75  NDLCGIELC---------YKCVHFTHL--------VARCTNIINLNSEDAKYVINVKQIA 117
           NDLCGI+           +  V    +        VARCT II+ N++DAKYVINVKQIA
Sbjct: 53  NDLCGIKESDTGLAPPSQWDLVSDKQMMQEEQPLQVARCTKIISPNTDDAKYVINVKQIA 112

Query: 118 K 118
           K
Sbjct: 113 K 113

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413939236|gb|AFW73787.1| hypothetical protein ZEAMMB73_970549 [Zea mays]

 Score =  114 bits (286), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/121 (56%), Positives = 78/121 (64%), Gaps = 28/121 (23%)

Query: 15  EPEDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKV 74
           EPED+I  EKNPRP DEDDIALLKT           + LGPYSTSIKK+EKEIK MAKK+
Sbjct: 4   EPEDDIMNEKNPRPLDEDDIALLKT-----------YGLGPYSTSIKKVEKEIKEMAKKI 52

Query: 75  NDLCGIELC---------YKCVHFTHL--------VARCTNIINLNSEDAKYVINVKQIA 117
           NDLCGI+           +  V    +        VARCT II+ N++DAKYVINVKQIA
Sbjct: 53  NDLCGIKESDTGLAPPSQWDLVSDKQMMQEEQPLQVARCTKIISPNTDDAKYVINVKQIA 112

Query: 118 K 118
           K
Sbjct: 113 K 113

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413939235|gb|AFW73786.1| hypothetical protein ZEAMMB73_970549 [Zea mays]

 Score =  114 bits (285), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 68/121 (56%), Positives = 78/121 (64%), Gaps = 28/121 (23%)

Query: 15  EPEDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKV 74
           EPED+I  EKNPRP DEDDIALLKT           + LGPYSTSIKK+EKEIK MAKK+
Sbjct: 4   EPEDDIMNEKNPRPLDEDDIALLKT-----------YGLGPYSTSIKKVEKEIKEMAKKI 52

Query: 75  NDLCGIELC---------YKCVHFTHL--------VARCTNIINLNSEDAKYVINVKQIA 117
           NDLCGI+           +  V    +        VARCT II+ N++DAKYVINVKQIA
Sbjct: 53  NDLCGIKESDTGLAPPSQWDLVSDKQMMQEEQPLQVARCTKIISPNTDDAKYVINVKQIA 112

Query: 118 K 118
           K
Sbjct: 113 K 113

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
TAIR|locus:2024822	426	RPT1A "regulatory particle tri	0.457	0.126	0.646	1.7e-15
UNIPROTKB|P46472	433	psmc2 "26S protease regulatory	0.220	0.060	0.769	2.5e-13
ZFIN|ZDB-GENE-040426-1327	433	psmc2 "proteasome (prosome, ma	0.220	0.060	0.769	3.2e-13
MGI|MGI:109555	433	Psmc2 "proteasome (prosome, ma	0.220	0.060	0.769	5.1e-13
UNIPROTKB|F1NFL8	432	PSMC2 "Uncharacterized protein	0.220	0.060	0.769	4.3e-12
GENEDB_PFALCIPARUM|PF13_0063	420	PF13_0063 "26S proteasome regu	0.220	0.061	0.692	1.1e-11
UNIPROTKB|Q8IEK3	420	PF13_0063 "26S proteasome regu	0.220	0.061	0.692	1.1e-11
UNIPROTKB|E1C4V5	424	PSMC2 "Uncharacterized protein	0.220	0.061	0.769	3.5e-11
WB|WBGene00004501	435	rpt-1 [Caenorhabditis elegans	0.457	0.124	0.369	8e-11
UNIPROTKB|Q18787	435	rpt-1 "26S protease regulatory	0.457	0.124	0.369	8e-11

TAIR|locus:2024822 RPT1A "regulatory particle triple-A 1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 201 (75.8 bits), Expect = 1.7e-15, P = 1.7e-15
 Identities = 42/65 (64%), Positives = 50/65 (76%)

Query:    17 EDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKVND 76
             EDEI++EKNPRP DEDDIALLKT           + LGPYS  IKK+EKEIK++AKK+ND
Sbjct:     6 EDEIRDEKNPRPLDEDDIALLKT-----------YGLGPYSAPIKKVEKEIKDLAKKIND 54

Query:    77 LCGIE 81
             LCGI+
Sbjct:    55 LCGIK 59

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0005737 "cytoplasm" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IGI;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0000502 "proteasome complex" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IDA

UNIPROTKB|P46472 psmc2 "26S protease regulatory subunit 7" [Xenopus laevis (taxid:8355)]

 Score = 103 (41.3 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
 Identities = 20/26 (76%), Positives = 22/26 (84%)

Query:    93 VARCTNIINLNSEDAKYVINVKQIAK 118
             VARCT IIN +SED KY+INVKQ AK
Sbjct:    95 VARCTKIINADSEDPKYIINVKQFAK 120

GO:0000502 "proteasome complex" evidence=ISS

GO:0006200 "ATP catabolic process" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0016887 "ATPase activity" evidence=ISS

GO:0022624 "proteasome accessory complex" evidence=ISS

ZFIN|ZDB-GENE-040426-1327 psmc2 "proteasome (prosome, macropain) 26S subunit, ATPase 2" [Danio rerio (taxid:7955)]

 Score = 103 (41.3 bits), Expect = 3.2e-13, Sum P(2) = 3.2e-13
 Identities = 20/26 (76%), Positives = 22/26 (84%)

Query:    93 VARCTNIINLNSEDAKYVINVKQIAK 118
             VARCT IIN +SED KY+INVKQ AK
Sbjct:    95 VARCTKIINADSEDPKYIINVKQFAK 120

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000502 "proteasome complex" evidence=IEA

MGI|MGI:109555 Psmc2 "proteasome (prosome, macropain) 26S subunit, ATPase 2" [Mus musculus (taxid:10090)]

 Score = 103 (41.3 bits), Expect = 5.1e-13, Sum P(2) = 5.1e-13
 Identities = 20/26 (76%), Positives = 22/26 (84%)

Query:    93 VARCTNIINLNSEDAKYVINVKQIAK 118
             VARCT IIN +SED KY+INVKQ AK
Sbjct:    95 VARCTKIINADSEDPKYIINVKQFAK 120

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000502 "proteasome complex" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISO

GO:0017025 "TBP-class protein binding" evidence=ISO

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0022624 "proteasome accessory complex" evidence=IDA

GO:0030163 "protein catabolic process" evidence=IEA

UNIPROTKB|F1NFL8 PSMC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 103 (41.3 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
 Identities = 20/26 (76%), Positives = 22/26 (84%)

Query:    93 VARCTNIINLNSEDAKYVINVKQIAK 118
             VARCT IIN +SED KY+INVKQ AK
Sbjct:    94 VARCTKIINADSEDPKYIINVKQFAK 119

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0022624 "proteasome accessory complex" evidence=IEA

GENEDB_PFALCIPARUM|PF13_0063 PF13_0063 "26S proteasome regulatory subunit 7, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 96 (38.9 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query:    93 VARCTNIINLNSEDAKYVINVKQIAK 118
             VARCT IIN +++  KY+INVKQIAK
Sbjct:    82 VARCTKIINADTDQTKYIINVKQIAK 107

GO:0005838 "proteasome regulatory particle" evidence=ISS

GO:0004175 "endopeptidase activity" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

UNIPROTKB|Q8IEK3 PF13_0063 "26S proteasome regulatory subunit 7, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 96 (38.9 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
 Identities = 18/26 (69%), Positives = 22/26 (84%)

Query:    93 VARCTNIINLNSEDAKYVINVKQIAK 118
             VARCT IIN +++  KY+INVKQIAK
Sbjct:    82 VARCTKIINADTDQTKYIINVKQIAK 107

GO:0004175 "endopeptidase activity" evidence=ISS

GO:0005838 "proteasome regulatory particle" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

UNIPROTKB|E1C4V5 PSMC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 103 (41.3 bits), Expect = 3.5e-11, Sum P(2) = 3.5e-11
 Identities = 20/26 (76%), Positives = 22/26 (84%)

Query:    93 VARCTNIINLNSEDAKYVINVKQIAK 118
             VARCT IIN +SED KY+INVKQ AK
Sbjct:    86 VARCTKIINADSEDPKYIINVKQFAK 111

GO:0005737 "cytoplasm" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

WB|WBGene00004501 rpt-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 99 (39.9 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
 Identities = 24/65 (36%), Positives = 38/65 (58%)

Query:    17 EDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKVND 76
             +D  +EEKN +  DE DIA+LK            +  GPY+  +K ++ +I+N  KKVN+
Sbjct:    15 DDTKEEEKNFQALDEGDIAVLKR-----------YGQGPYAEQLKTLDADIENCLKKVNE 63

Query:    77 LCGIE 81
             L G++
Sbjct:    64 LSGVK 68

GO:0000166 "nucleotide binding" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030163 "protein catabolic process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

UNIPROTKB|Q18787 rpt-1 "26S protease regulatory subunit 7" [Caenorhabditis elegans (taxid:6239)]

 Score = 99 (39.9 bits), Expect = 8.0e-11, Sum P(2) = 8.0e-11
 Identities = 24/65 (36%), Positives = 38/65 (58%)

Query:    17 EDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKVND 76
             +D  +EEKN +  DE DIA+LK            +  GPY+  +K ++ +I+N  KKVN+
Sbjct:    15 DDTKEEEKNFQALDEGDIAVLKR-----------YGQGPYAEQLKTLDADIENCLKKVNE 63

Query:    77 LCGIE 81
             L G++
Sbjct:    64 LSGVK 68

GO:0006200 "ATP catabolic process" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0016887 "ATPase activity" evidence=ISS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0000502 "proteasome complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00033984001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (426 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00014791001	SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_1, whole genome shotg [...] (309 aa)				•	•	•	•		0.860
	GSVIVG00010470001	SubName- Full=Chromosome chr17 scaffold_263, whole genome shotgun sequence; (386 aa)				•	•	•	•		0.831
	GSVIVG00036762001	SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (440 aa)				•	•	•	•		0.804
	GSVIVG00024499001	RecName- Full=Proteasome subunit beta type; EC=3.4.25.1;; The proteasome is a multicatalytic pr [...] (245 aa)				•	•	•	•		0.687
	GSVIVG00034204001	RecName- Full=Ubiquitin carboxyl-terminal hydrolase; EC=3.1.2.15; (479 aa)				•	•		•		0.669
	GSVIVG00015634001	SubName- Full=Chromosome chr2 scaffold_11, whole genome shotgun sequence; (365 aa)				•	•	•	•		0.664
	GSVIVG00019352001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (320 aa)				•	•	•	•		0.622
	GSVIVG00006696001	SubName- Full=Chromosome chr2 scaffold_176, whole genome shotgun sequence; (267 aa)				•	•	•	•		0.619
	GSVIVG00031868001	SubName- Full=Chromosome undetermined scaffold_60, whole genome shotgun sequence; (1005 aa)				•	•	•	•		0.605
	GSVIVG00018640001	SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (629 aa)				•	•	•	•		0.603

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
KOG0729	435	consensus 26S proteasome regulatory complex, ATPas	99.96
KOG0728	404	consensus 26S proteasome regulatory complex, ATPas	98.96
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	97.23
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	90.68
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	84.07
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	80.28

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3.2e-30  Score=217.73  Aligned_cols=99  Identities=49%  Similarity=0.711  Sum_probs=89.9

Q ss_pred             hhhcCCCC-chhhhhcCCCCCCChhhHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHhCcccccccc
Q 037077            9 GKLWQLEP-EDEIKEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKVNDLCGIELCYKCV   87 (118)
Q Consensus         9 gk~~~~~~-~~~~~~~~~~~~lde~dI~lLk~~~~~~~~~~~~yg~gpYs~~Ik~lE~dIk~~~~~In~L~GiKEsdTGL   87 (118)
                      |.+.+..+ +++.++++++.||||+||++||+           ||+|||+..|+++|.+|+++.++||+++|+|||||||
T Consensus         6 ~~~~~~~~~~~~~~d~~~~~~l~e~di~~lk~-----------yg~~pya~~ik~~e~di~~l~~ki~~~~gikesdtgl   74 (435)
T KOG0729|consen    6 DDDKRKTPMHDEKEDDKPINPLDEGDIALLKS-----------YGQGPYAAQIKKVEADIEDLLKKINELTGIKESDTGL   74 (435)
T ss_pred             cchhhcCccccchhhccCCCccchhhHHHHHH-----------hCCChhHHHHHHHHHHHHHHHHHHHHhhCccccccCC
Confidence            34444444 44555668889999999999999           9999999999999999999999999999999999999


Q ss_pred             -----------------CCCceeeEEEeecCCCCCCcceEEeeccccC
Q 037077           88 -----------------HFTHLVARCTNIINLNSEDAKYVINVKQIAK  118 (118)
Q Consensus        88 -----------------E~pLqVArCtKII~~~~~e~KYVInIkqiAK  118 (118)
                                       |||||||||||||++++.++|||||||||||
T Consensus        75 app~~wdl~~dkq~mq~eqplqvarctkii~~~~~d~~yvin~kqiak  122 (435)
T KOG0729|consen   75 APPALWDLAADKQRMQEEQPLQVARCTKIISGNSEDPKYVINVKQIAK  122 (435)
T ss_pred             CChHHHHHhhhHHHhcccCCceeheeeeecCCCCCCcceeeeHHHHHH
Confidence                             8999999999999999999999999999997

>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=1.9e-10  Score=97.56  Aligned_cols=61  Identities=13%  Similarity=0.266  Sum_probs=57.6

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHh----------C-cccccccc-CCCceeeEEEeecCCCC------CCcceEEeecc
Q 037077           55 PYSTSIKKMEKEIKNMAKKVNDLC----------G-IELCYKCV-HFTHLVARCTNIINLNS------EDAKYVINVKQ  115 (118)
Q Consensus        55 pYs~~Ik~lE~dIk~~~~~In~L~----------G-iKEsdTGL-E~pLqVArCtKII~~~~------~e~KYVInIkq  115 (118)
                      ||+++|.++|..|.++++++++|.          + +||+.+.| ||+++||+|+|.|++++      |+|||||||..
T Consensus        21 y~~~ki~~~~~~v~~kt~nlrrleaqrneln~kvr~lreel~~lqe~gsyvgev~k~m~k~kVLVKvhpegKyvvdv~k   99 (404)
T KOG0728|consen   21 YYLQKIEELQLQVAEKTQNLRRLEAQRNELNAKVRLLREELQLLQEPGSYVGEVVKAMGKKKVLVKVHPEGKYVVDVDK   99 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCcchHHHHHHhcCcceEEEEEcCCCcEEEeccC
Confidence            899999999999999999999998          5 89999999 99999999999999887      89999999863

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.00087  Score=58.54  Aligned_cols=66  Identities=14%  Similarity=0.198  Sum_probs=50.8

Q ss_pred             CCCCchhhhHHHHHHHHHHHHHHHHHHHhCcccccccc-----------------CCCceeeEEEeecCCCC------CC
Q 037077           50 SFSLGPYSTSIKKMEKEIKNMAKKVNDLCGIELCYKCV-----------------HFTHLVARCTNIINLNS------ED  106 (118)
Q Consensus        50 ~yg~gpYs~~Ik~lE~dIk~~~~~In~L~GiKEsdTGL-----------------E~pLqVArCtKII~~~~------~e  106 (118)
                      +|...+|...+.+.+..+.+...++..+...+.+..++                 ++||+||+|+++|+.+.      ..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~pl~vg~v~e~id~~~~iVks~~g   94 (406)
T COG1222          15 SYEPQEYLNKLEDTKLKLLEKEKRLLLLEEQRLEAEGLRLKREVDRLREEIERLKEPPLIVGTVLEVLDDGRAIVKSSTG   94 (406)
T ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHhcCCCceEEEEEEEcCCceEEEEeCCC
Confidence            38888999999999888888888888775433333332                 89999999999998662      57


Q ss_pred             cceEEeecc
Q 037077          107 AKYVINVKQ  115 (118)
Q Consensus       107 ~KYVInIkq  115 (118)
                      ++|||++-+
T Consensus        95 ~~~vV~i~~  103 (406)
T COG1222          95 PKFVVNILS  103 (406)
T ss_pred             CeEEEeccC
Confidence            788888754

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=90.68  E-value=0.61  Score=39.86  Aligned_cols=36  Identities=11%  Similarity=0.218  Sum_probs=25.7

Q ss_pred             cccccccc-CCCceeeEEEeecCCCC------CCcceEEeecc
Q 037077           80 IELCYKCV-HFTHLVARCTNIINLNS------EDAKYVINVKQ  115 (118)
Q Consensus        80 iKEsdTGL-E~pLqVArCtKII~~~~------~e~KYVInIkq  115 (118)
                      ++++..-| .+|+.||.|.++++.+.      ..++|+|++..
T Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~   97 (398)
T PTZ00454         55 AKEEVKRIQSVPLVIGQFLEMIDSNYGIVSSTSGSNYYVRILS   97 (398)
T ss_pred             HHHHHHHHhCCCceEEEEEEEEcCCEEEEEcCCCCEEEEeccc
Confidence            44444444 79999999999997653      45678887653

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=84.07  E-value=2.8  Score=34.42  Aligned_cols=57  Identities=19%  Similarity=0.295  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHh----Ccccccccc-CCCceeeEEEeecCCCC------CCcceEEeecc
Q 037077           59 SIKKMEKEIKNMAKKVNDLC----GIELCYKCV-HFTHLVARCTNIINLNS------EDAKYVINVKQ  115 (118)
Q Consensus        59 ~Ik~lE~dIk~~~~~In~L~----GiKEsdTGL-E~pLqVArCtKII~~~~------~e~KYVInIkq  115 (118)
                      .+++++.+++++....+.+.    .+++...-+ .+|+.+|+|.++++.+.      +..+|++++..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (364)
T TIGR01242         7 RIRKLEDEKRSLEKEKIRLERELERLRSEIERLRSPPLIVGTVLEVLDDNRVVVKSSTGPNFVVNVSA   74 (364)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEEEecCCEEEEEeCCCCEEEEeccc
Confidence            34444444444444444333    133333333 78999999999998653      57788887654

Many proteins may score above the trusted cutoff because an internal

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=80.28  E-value=6  Score=34.58  Aligned_cols=36  Identities=17%  Similarity=0.076  Sum_probs=25.5

Q ss_pred             cccccccc-CCCceeeEEEeecCCCC------CCcceEEeecc
Q 037077           80 IELCYKCV-HFTHLVARCTNIINLNS------EDAKYVINVKQ  115 (118)
Q Consensus        80 iKEsdTGL-E~pLqVArCtKII~~~~------~e~KYVInIkq  115 (118)
                      .++...-| .+|+.||+|.++++.+.      ..+.|+|+|..
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  135 (438)
T PTZ00361         93 ELKKVDDLRGSPLSVGTLEEIIDENHAIVSSSVGPEYYVNILS  135 (438)
T ss_pred             HHHHHHHhhCCCcEEEEEEEEeCCCeEEEEeCCCCEEEEeccC
Confidence            44444444 79999999999998653      35568887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	118
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	99.86
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.67
2wg5_A	109	General control protein GCN4, proteasome-activatin	97.53
3h43_A	85	Proteasome-activating nucleotidase; regulatory par	95.72
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	94.12
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	91.87

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.86  E-value=7.6e-23  Score=174.91  Aligned_cols=87  Identities=38%  Similarity=0.651  Sum_probs=52.3

Q ss_pred             hhcCCCCCCChhhHHHHHHHHhhhccCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHhCcccccccc-------------
Q 037077           21 KEEKNPRPPDEDDIALLKTCIRKLSFLNPSFSLGPYSTSIKKMEKEIKNMAKKVNDLCGIELCYKCV-------------   87 (118)
Q Consensus        21 ~~~~~~~~lde~dI~lLk~~~~~~~~~~~~yg~gpYs~~Ik~lE~dIk~~~~~In~L~GiKEsdTGL-------------   87 (118)
                      .+++.+.||||+||++||+           ||+|||+.+||++|.+|+.+.+++|++||+|||||||             
T Consensus        21 ~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   89 (467)
T 4b4t_H           21 PDDDKIVPLTEGDIQVLKS-----------YGAAPYAAKLKQTENDLKDIEARIKEKAGVKESDTGLAPSHLWDIMGDRQ   89 (467)
T ss_dssp             ---------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHTTTC------------
T ss_pred             cccccCCCCCHHHHHHHHH-----------hCCchhHHHHHHHHHHHHHHHHHHHHhhcccccccCCCCcccccchhchH
Confidence            3456678999999999999           9999999999999999999999999999999999999             


Q ss_pred             ----CCCceeeEEEeecCCC------------------------------CCCcceEEeeccccC
Q 037077           88 ----HFTHLVARCTNIINLN------------------------------SEDAKYVINVKQIAK  118 (118)
Q Consensus        88 ----E~pLqVArCtKII~~~------------------------------~~e~KYVInIkqiAK  118 (118)
                          |+|||||||||||.++                              +++.||+|++++.+|
T Consensus        90 ~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~  154 (467)
T 4b4t_H           90 RLGEEHPLQVARCTKIIKGNGESDETTTDNNNSGNSNSNSNQQSTDADEDDEDAKYVINLKQIAK  154 (467)
T ss_dssp             -----CCSSSEEEEECCCC--------------------------------CCCCCEEEETTSCC
T ss_pred             HhccccchhHhhhHhHhccccccccccccccccccccccccccCccccccCCCCcEEEEecCCCe
Confidence                7999999999999543                              247799999998775

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.67  E-value=5.1e-05  Score=63.79  Aligned_cols=62  Identities=18%  Similarity=0.301  Sum_probs=49.1

Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHhC-----------cccccccc-CCCceeeEEEeecCCCC------CCcceEEeecc
Q 037077           54 GPYSTSIKKMEKEIKNMAKKVNDLCG-----------IELCYKCV-HFTHLVARCTNIINLNS------EDAKYVINVKQ  115 (118)
Q Consensus        54 gpYs~~Ik~lE~dIk~~~~~In~L~G-----------iKEsdTGL-E~pLqVArCtKII~~~~------~e~KYVInIkq  115 (118)
                      .||..+|+++|.++++..+++++|..           ++|+...| ++|++||+|+++|+.++      +.++|+|++..
T Consensus        21 ~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~e~~~l~~~~~~v~~~~~~~~~~~~iv~~~~~~~~~v~~~~  100 (405)
T 4b4t_J           21 PYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIKIVSDKKVLVKVQPEGKYIVDVAK  100 (405)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECTTSCEEEEESSSCEEEECCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEecCCeEEEEeCCCCEEEEeccc
Confidence            37899999999999999999988872           45566666 89999999999998654      67788888764

>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A

Probab=97.53  E-value=0.00016  Score=50.86  Aligned_cols=54  Identities=22%  Similarity=0.317  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhCcccccccc-CCCceeeEEEeecCCCC------CCcceEEeecc
Q 037077           59 SIKKMEKEIKNMAKKVNDLCGIELCYKCV-HFTHLVARCTNIINLNS------EDAKYVINVKQ  115 (118)
Q Consensus        59 ~Ik~lE~dIk~~~~~In~L~GiKEsdTGL-E~pLqVArCtKII~~~~------~e~KYVInIkq  115 (118)
                      ..|+++.+++++.++++++   +|+..-| ++|++||+|+++|+.++      ..++|+|+|.+
T Consensus         8 ~~~~l~~~~~~l~~~i~~l---keel~~L~~~P~~Vg~v~e~~d~~~~iVk~s~g~~~~V~v~~   68 (109)
T 2wg5_A            8 RMKQLEDKVEELLSKNYHL---ENEVARLRSPPLLVGVVSDILEDGRVVVKSSTGPKFVVNTSQ   68 (109)
T ss_dssp             -CHHHHHHHHHHHHHHHHH---HHHHHHHHSCCEEEEEEEEECTTSCEEEEETTSCEEEECBCT
T ss_pred             HHHHHHHHHHHHHHHHHHH---HHHHHHHhCCCceEEEEEEEecCCEEEEEeCCCCEEEEEccc
Confidence            3466666666666666544   4555555 89999999999998654      35566666653

>3h43_A Proteasome-activating nucleotidase; regulatory particle, nucleosidase, ATP-binding, cytoplasm, nucleotide-binding, hydrolase; 2.10A {Methanocaldococcus jannaschii}

Probab=95.72  E-value=0.0042  Score=42.07  Aligned_cols=29  Identities=10%  Similarity=0.232  Sum_probs=24.3

Q ss_pred             CCCceeeEEEeecCCCC------CCcceEEeeccc
Q 037077           88 HFTHLVARCTNIINLNS------EDAKYVINVKQI  116 (118)
Q Consensus        88 E~pLqVArCtKII~~~~------~e~KYVInIkqi  116 (118)
                      ++|+.||.+.++|+.+.      ..++|+|+|.+.
T Consensus        16 ~~P~~vG~v~e~~dd~~~iVkss~g~~~~V~v~~~   50 (85)
T 3h43_A           16 VPPLIVGTVVDKVGERKVVVKSSTGPSFLVNVSHF   50 (85)
T ss_dssp             SCCEEEEEEEEEEETTEEEEEETTSSEEEEEBCTT
T ss_pred             CCCceEEEEEEEcCCCEEEEEeCCCCeEEEEecCc
Confidence            69999999999998664      578899988753

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=94.12  E-value=0.038  Score=44.59  Aligned_cols=59  Identities=10%  Similarity=0.094  Sum_probs=42.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHh-----------Ccccccccc-CCCceeeEEEeecCCCC-----CCcceEEeecc
Q 037077           57 STSIKKMEKEIKNMAKKVNDLC-----------GIELCYKCV-HFTHLVARCTNIINLNS-----EDAKYVINVKQ  115 (118)
Q Consensus        57 s~~Ik~lE~dIk~~~~~In~L~-----------GiKEsdTGL-E~pLqVArCtKII~~~~-----~e~KYVInIkq  115 (118)
                      ...+++++.++..++.+..+|.           .+|++..-| +|||.||.++++++.+.     ...+|+|+|.+
T Consensus        53 ~~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~sPPL~iGtvlev~dd~~aiV~s~Gr~~~V~Vsp  128 (251)
T 3m9b_A           53 ARDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQPPSGYGVLLATHDDDTVDVFTSGRKMRLTCSP  128 (251)
T ss_dssp             CHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEEECSSSCEEEECSSSCCEECBCT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEEEcCCCEEEEEeCCceEEEEeCC
Confidence            4467777777766655555433           356666666 99999999999997654     56789998876

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.87  E-value=0.19  Score=42.15  Aligned_cols=55  Identities=15%  Similarity=0.360  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHh----Ccccccccc-CCCceeeEEEeecCCCC------CCcceEEeecc
Q 037077           61 KKMEKEIKNMAKKVNDLC----GIELCYKCV-HFTHLVARCTNIINLNS------EDAKYVINVKQ  115 (118)
Q Consensus        61 k~lE~dIk~~~~~In~L~----GiKEsdTGL-E~pLqVArCtKII~~~~------~e~KYVInIkq  115 (118)
                      +++|..++.+..+++.|.    ..+|+...| ..|+.||.+.++|+.+.      ..++|+|++.+
T Consensus        68 ~~~e~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~vg~~~~~~~~~~~iv~~~~g~~~~v~~~~  133 (437)
T 4b4t_L           68 RRYDDQLKQRRQNIRDLEKLYDKTENDIKALQSIGQLIGEVMKELSEEKYIVKASSGPRYIVGVRN  133 (437)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCEEEEEEEECSSSSCEEEEETTSCEEEECBCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCceeeeheeeecCCcEEEEECCCCEEEEeccc
Confidence            455666666666655544    356666777 79999999999998654      57788888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00