Citrus Sinensis ID: 037120
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 489 | ||||||
| 255544786 | 486 | conserved hypothetical protein [Ricinus | 0.932 | 0.938 | 0.649 | 1e-177 | |
| 356541179 | 477 | PREDICTED: uncharacterized protein LOC10 | 0.965 | 0.989 | 0.614 | 1e-169 | |
| 297746364 | 570 | unnamed protein product [Vitis vinifera] | 0.893 | 0.766 | 0.612 | 1e-160 | |
| 225435524 | 462 | PREDICTED: uncharacterized protein LOC10 | 0.914 | 0.967 | 0.599 | 1e-159 | |
| 240256280 | 537 | transducin/WD40 domain-containing protei | 0.948 | 0.864 | 0.516 | 1e-140 | |
| 297811407 | 489 | hypothetical protein ARALYDRAFT_325778 [ | 0.946 | 0.946 | 0.515 | 1e-139 | |
| 224053382 | 419 | predicted protein [Populus trichocarpa] | 0.732 | 0.854 | 0.649 | 1e-139 | |
| 334187643 | 554 | transducin/WD40 domain-containing protei | 0.903 | 0.797 | 0.504 | 1e-134 | |
| 238481257 | 572 | transducin/WD40 domain-containing protei | 0.934 | 0.798 | 0.505 | 1e-133 | |
| 357444359 | 424 | hypothetical protein MTR_1g105170 [Medic | 0.764 | 0.882 | 0.569 | 1e-128 |
| >gi|255544786|ref|XP_002513454.1| conserved hypothetical protein [Ricinus communis] gi|223547362|gb|EEF48857.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust.
Identities = 304/468 (64%), Positives = 369/468 (78%), Gaps = 12/468 (2%)
Query: 1 MEKYLVSRESVPENPKRCNSSNRWKRSVVELNGRFESKYRHDLSALLMQSYSQIGAFPHL 60
MEKYL+ ++ +PKR + WKRS++EL GRFE KYRH LSALL+QSY++IGAFPH
Sbjct: 1 MEKYLLPQKP---SPKRVQRRHEWKRSLIELQGRFEPKYRHHLSALLIQSYTEIGAFPHF 57
Query: 61 YHVDRVLCPTHEGIVNSQRSRAGDVAMIDHRRSFGKPGISALDFDCKGIYLVSATRSGCL 120
YHVD V C TH +R +D GISAL+FD KGIYLVS T+SGCL
Sbjct: 58 YHVDGVPCQTH-------LNRLARAVNMDPPFPITSQGISALEFDTKGIYLVSVTKSGCL 110
Query: 121 TVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNV 180
TVHDFE+LY C+ ++ LKED+SKH+LH+ L +QLD VRWN+ANQDEVAC S + N
Sbjct: 111 TVHDFETLY--CHTSVLVPCLKEDESKHVLHLSLNRQLDVVRWNIANQDEVACTSMKKNE 168
Query: 181 VSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWD 240
V I+DIGYIS EPVEVL+TRR+VT+ GSDV KGL+D+AF+ + SRLIASDT+G+VN+WD
Sbjct: 169 VLIFDIGYISSEPVEVLRTRRTVTLHGSDVHKGLTDIAFTIFDKSRLIASDTNGMVNLWD 228
Query: 241 RRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEV 300
RR+GVLP LEL++ T+NSIQ++ ENQI+F AG+HG+IY+WDLRGGR+S+ F +HKEV
Sbjct: 229 RRMGVLPYLELTSNCRSTINSIQVNVENQIVFGAGRHGTIYMWDLRGGRSSSGFQSHKEV 288
Query: 301 CHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYN 360
CH P+TS K+ASMLEKIGTLKAQS IV +E+HSID DPSC YQLAFHLDDGWSGVLD+YN
Sbjct: 289 CHPPITSWKVASMLEKIGTLKAQSAIVPKEVHSIDFDPSCPYQLAFHLDDGWSGVLDIYN 348
Query: 361 SRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSP 420
+V+HVHCPPPAWL+DSN SAD L+LRKPSWL T SIYAVGSSS +GIHLLDF+P SSP
Sbjct: 349 CQVTHVHCPPPAWLNDSNISADLLYLRKPSWLPTYSIYAVGSSSANGIHLLDFYPDPSSP 408
Query: 421 SHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTK 468
HVDY+ DIE S +K+N+FVPLSE VTAC HP+N I+AGTK
Sbjct: 409 CHVDYSMDIERHSSANNQEKQNKFVPLSEAVTACAAHPINGAIIAGTK 456
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356541179|ref|XP_003539058.1| PREDICTED: uncharacterized protein LOC100780441 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 600 bits (1548), Expect = e-169, Method: Compositional matrix adjust.
Identities = 300/488 (61%), Positives = 371/488 (76%), Gaps = 16/488 (3%)
Query: 1 MEKYLVSRESVPE--NPKRCNSSNRWKRSVVELNGRFESKYRHDLSALLMQSYSQIGAFP 58
MEKYLVS + E P R + +WKR VELNGRFE YRH++ LL++SYS++ AFP
Sbjct: 1 MEKYLVSHKPPIEKVQPHRRSWRCQWKRGSVELNGRFERNYRHEMLDLLIRSYSEVAAFP 60
Query: 59 HLYHVDRVLCPTHEGIVNSQRSRAGDVAMIDHRRSFGKPGISALDFDCKGIYLVSATRSG 118
HLY VD C +H +R A D F K GISA+DFD KGIYLVS T+SG
Sbjct: 61 HLYQVDGAPCQSHT-------NRLIGEANGDGHLPFRKQGISAVDFDNKGIYLVSVTKSG 113
Query: 119 CLTVHDFESLYYQCNGTLPGVG-LKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177
CLTVHDFE+LY Q +P + LKED+SKHL+H+ L QQLDAVRWN NQDEV CAS +
Sbjct: 114 CLTVHDFEALYCQ----IPELTCLKEDESKHLMHLSLNQQLDAVRWNPLNQDEVVCASVK 169
Query: 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237
SN + I+D+GY+S +PVEVL+TR++ TV GS + KGLSD+AF+ N +R++ASDTHG +N
Sbjct: 170 SNKLLIFDVGYVSSDPVEVLRTRQTTTVNGSSIHKGLSDVAFTK-NDTRILASDTHGAIN 228
Query: 238 IWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNH 297
+WDRRV LP LEL++ S GTLNSIQL+A+NQIIF AGKHG +Y+WD+RGGR SA F +
Sbjct: 229 VWDRRVNTLPCLELASASCGTLNSIQLNADNQIIFGAGKHGLVYVWDIRGGRASATFQSL 288
Query: 298 KEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLD 357
KE+CH P+TS+KLA++LEKIG+LKAQ+ IV +EIHSID+DPSC YQLAFHL DGWSGVLD
Sbjct: 289 KEICHPPVTSVKLATLLEKIGSLKAQANIVPKEIHSIDIDPSCPYQLAFHLVDGWSGVLD 348
Query: 358 VYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGS 417
N +V+H+HCPPPAWL+DS AD +LRKPSWLST SIY +GSSSD GIHLLDF+P +
Sbjct: 349 TNNFQVTHIHCPPPAWLNDSYIPADLSYLRKPSWLSTGSIYLIGSSSDCGIHLLDFYPST 408
Query: 418 SSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477
+SPSHVDY ED++ S R +NRF+ LSEGV +C HPL N IVAGTK +SLLV+SQ
Sbjct: 409 NSPSHVDYKEDMQENSRRHNRSNQNRFISLSEGVISCAAHPLYNAIVAGTKKTSLLVISQ 468
Query: 478 KQQ-CTSD 484
+Q+ C SD
Sbjct: 469 RQESCRSD 476
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Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297746364|emb|CBI16420.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust.
Identities = 288/470 (61%), Positives = 346/470 (73%), Gaps = 33/470 (7%)
Query: 22 NRWKRSVVELNGRFESKYRHDLSALLMQSYSQIGAFPHLYHVDRVLCPTHE----GIVNS 77
+RWKRS +ELNGRFES+YRHD+S LLMQSYS+IGAF HLYH++ V C TH +
Sbjct: 64 HRWKRSAIELNGRFESRYRHDISGLLMQSYSEIGAFAHLYHINGVQCQTHVCEFLKLFFP 123
Query: 78 QRSRAGDVAMIDHRRSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLP 137
S VA+ GISAL+FD KGIYL S T+ GCLTVHDFESLY C
Sbjct: 124 HISLPTFVAL---------QGISALEFDSKGIYLASVTKLGCLTVHDFESLY--CQTIEI 172
Query: 138 GVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVL 197
L+E +++HLLH+ QLD VRWNLANQDEVAC S +SN V I+D+GYIS EPVEVL
Sbjct: 173 STCLEEGETRHLLHLSTDHQLDVVRWNLANQDEVACTSMKSNEVLIFDVGYISSEPVEVL 232
Query: 198 KTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHG 257
+ R +V + KGLSD+AF++ + SRL ASD GV+++WDRR P LEL+T S
Sbjct: 233 QKRHTV-----NAHKGLSDIAFTSTDDSRLFASDMCGVIHLWDRRASDFPCLELTTNSRT 287
Query: 258 TLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVC-------------HLP 304
TLNSIQL+ ENQIIF AGK G IY+WDLRGGRTSA F +HKE+ H P
Sbjct: 288 TLNSIQLNEENQIIFGAGKLGVIYMWDLRGGRTSAAFQSHKEIAMLNTCSPIIILVYHPP 347
Query: 305 LTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVS 364
L S+KLASMLEKI LKAQ+ I+S+EIHS+DLDPSC YQLAFHLDDGWSGVLD++N +V+
Sbjct: 348 LASIKLASMLEKIEPLKAQADIISKEIHSVDLDPSCPYQLAFHLDDGWSGVLDIHNFQVT 407
Query: 365 HVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVD 424
H+HCPPPAWL+ SN+SAD ++RKPSWL T SIYAVGSSSD+GIHLLDF+P SSSP HV+
Sbjct: 408 HIHCPPPAWLNGSNSSADVSYVRKPSWLPTYSIYAVGSSSDNGIHLLDFYPDSSSPCHVE 467
Query: 425 YNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLV 474
Y+ED++SLS K+N FVPLSEGVTAC THPLN TI+AGTK + L+
Sbjct: 468 YSEDMQSLSGVKNQCKQNMFVPLSEGVTACATHPLNGTIIAGTKVCTFLL 517
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225435524|ref|XP_002283009.1| PREDICTED: uncharacterized protein LOC100243206 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust.
Identities = 293/489 (59%), Positives = 357/489 (73%), Gaps = 42/489 (8%)
Query: 1 MEKYLV----SRESVPENPKRCNSSNRWKRSVVELNGRFESKYRHDLSALLMQSYSQIGA 56
M++Y+V SR+S+ P R +RWKRS +ELNGRFES+YRHD+S LLMQSYS++
Sbjct: 1 MDRYVVPLQPSRDSL--RPIR---RHRWKRSAIELNGRFESRYRHDISGLLMQSYSEM-- 53
Query: 57 FPHLYHVDRVLCPTHEGIVNSQRSRAGDVAMIDHRRSFGKPGISALDFDCKGIYLVSATR 116
+R + +D + K GISAL+FD KGIYL S T+
Sbjct: 54 -----------------------NRIANGMYMDLQVPIRKQGISALEFDSKGIYLASVTK 90
Query: 117 SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176
GCLTVHDFESLY C L+E +++HLLH+ QLD VRWNLANQDEVAC S
Sbjct: 91 LGCLTVHDFESLY--CQTIEISTCLEEGETRHLLHLSTDHQLDVVRWNLANQDEVACTSM 148
Query: 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVV 236
+SN V I+D+GYIS EPVEVL+ R +V + KGLSD+AF++ + SRL ASD GV+
Sbjct: 149 KSNEVLIFDVGYISSEPVEVLQKRHTV-----NAHKGLSDIAFTSTDDSRLFASDMCGVI 203
Query: 237 NIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHN 296
++WDRR P LEL+T S TLNSIQL+ ENQIIF AGK G IY+WDLRGGRTSA F +
Sbjct: 204 HLWDRRASDFPCLELTTNSRTTLNSIQLNEENQIIFGAGKLGVIYMWDLRGGRTSAAFQS 263
Query: 297 HKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVL 356
HKEV H PL S+KLASMLEKI LKAQ+ I+S+EIHS+DLDPSC YQLAFHLDDGWSGVL
Sbjct: 264 HKEVYHPPLASIKLASMLEKIEPLKAQADIISKEIHSVDLDPSCPYQLAFHLDDGWSGVL 323
Query: 357 DVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPG 416
D++N +V+H+HCPPPAWL+ SN+SAD ++RKPSWL T SIYAVGSSSD+GIHLLDF+P
Sbjct: 324 DIHNFQVTHIHCPPPAWLNGSNSSADVSYVRKPSWLPTYSIYAVGSSSDNGIHLLDFYPD 383
Query: 417 SSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476
SSSP HV+Y+ED++SLS K+N FVPLSEGVTAC THPLN TI+AGTK SSLLV+S
Sbjct: 384 SSSPCHVEYSEDMQSLSGVKNQCKQNMFVPLSEGVTACATHPLNGTIIAGTKQSSLLVIS 443
Query: 477 QKQQ-CTSD 484
Q+ + C D
Sbjct: 444 QRHKSCQGD 452
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240256280|ref|NP_196796.5| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|332004446|gb|AED91829.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 260/503 (51%), Positives = 339/503 (67%), Gaps = 39/503 (7%)
Query: 1 MEKYLVSRESVPENPKRCNSSNRWKRSVVELNGRFESKYRHDLSALLMQSYSQIGAFPHL 60
MEKYLVS E P R WKRS++E+NGR +S YRH+L + + SYS+IG F H
Sbjct: 49 MEKYLVSPEPSPAK-SRTTVRRPWKRSLIEVNGRLDSAYRHELYSRVAHSYSEIGKFSHF 107
Query: 61 YHVDRVLCPTHEGIVNSQRSRAGDVAMIDHRRSFGKP---GISALDFDCKGIYLVSATRS 117
YH++ C TH M+ + + P G++ LDFD +GI+LVS TRS
Sbjct: 108 YHLNENPCITH---------------MMQIQSLYQCPTMRGVAGLDFDNRGIFLVSVTRS 152
Query: 118 GCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLP--QQLDAVRWNLANQDEVACAS 175
GCL VHDFESLY C L G G ED+SKH++H P ++ D RWN +NQ+EVAC S
Sbjct: 153 GCLMVHDFESLY--CQSKL-GPGSAEDESKHVVHFSYPPGREFDVARWNPSNQNEVACTS 209
Query: 176 TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGV 235
+ + V I+DI Y+S +P EVL+TR+ ++++G + +GLSD+A ++ SR+ + DT G+
Sbjct: 210 RKHDQVLIFDISYMSPKPTEVLQTRQKLSIIGRKISRGLSDVAITSDEDSRIFSPDTLGM 269
Query: 236 VNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH 295
V++WDRR GV P +ELST + ++ SIQ++ +NQ IF AGK G I++WDLRGGR S+ F
Sbjct: 270 VHVWDRRAGVSPCIELSTDRYDSIKSIQIYVDNQTIFGAGKEGIIHIWDLRGGRNSSAFQ 329
Query: 296 NHKEV-------------CHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSY 342
+ K+V LPL SL LA L+KI +LKAQS+IV +EIHSID++PS +
Sbjct: 330 SRKDVSLTRGELELAMAMSQLPLASLHLAPKLQKIASLKAQSEIVPKEIHSIDVNPSSPH 389
Query: 343 QLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGS 402
QLAFHLDDGWSGVLD+Y S V+HVHCPPPAWL SN+SAD L LRKPSWL T+SIY VGS
Sbjct: 390 QLAFHLDDGWSGVLDIYKSEVTHVHCPPPAWLDGSNSSAD-LILRKPSWLPTSSIYVVGS 448
Query: 403 SSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNT 462
S+ GIH+LDF P S SP HVDY+ED + +R K N+FV LSE VT C HPLN
Sbjct: 449 MSEKGIHVLDFHPSSRSPCHVDYDEDTQRNEKRDKCNHRNKFVSLSETVTGCAAHPLNGM 508
Query: 463 IVAGTKNSSLLVVSQKQQCTSDS 485
IVAGT+NSSLL+++Q C+S S
Sbjct: 509 IVAGTQNSSLLLIAQ-MHCSSSS 530
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811407|ref|XP_002873587.1| hypothetical protein ARALYDRAFT_325778 [Arabidopsis lyrata subsp. lyrata] gi|297319424|gb|EFH49846.1| hypothetical protein ARALYDRAFT_325778 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 260/504 (51%), Positives = 342/504 (67%), Gaps = 41/504 (8%)
Query: 1 MEKYLVSRESVPENPKRCNSSNR-WKRSVVELNGRFESKYRHDLSALLMQSYSQIGAFPH 59
MEKYLVS ES P K + R WKRS++E+ GR ES YRH+L +L+ SY +IG F H
Sbjct: 1 MEKYLVSPESSPA--KSTTTVRRPWKRSLIEVTGRLESAYRHELYSLVAHSYLEIGKFSH 58
Query: 60 LYHVDRVLCPTHEGIVNSQRSRAGDVAMIDHRRSFGKP---GISALDFDCKGIYLVSATR 116
YH++ C TH M + +R + P G++ LDFD +GI++VS TR
Sbjct: 59 FYHLNENPCITH---------------MREIQRLYHCPTMRGVAGLDFDSRGIFIVSVTR 103
Query: 117 SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLP--QQLDAVRWNLANQDEVACA 174
SGCL VHDFESLY Q G G ED+SKH++H P ++ D RWN +NQ+EVAC
Sbjct: 104 SGCLMVHDFESLYCQSK---VGPGSLEDESKHVVHFSYPPGREFDVARWNPSNQNEVACT 160
Query: 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG 234
S + + V I+DI Y+S +P EVL+TR+ ++++G V +GLSD+A ++ SR+ + DT G
Sbjct: 161 SRKHDQVLIFDISYMSPKPTEVLQTRQKLSIIGRKVSRGLSDVAMTSDEDSRIFSPDTLG 220
Query: 235 VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPF 294
+V++WDRR GV P +ELST + ++ SIQ++ +NQ IF AGK G I++WDLRGGR S+ F
Sbjct: 221 MVHVWDRRAGVSPCIELSTDRYDSIKSIQIYVDNQTIFGAGKEGIIHIWDLRGGRNSSAF 280
Query: 295 HNHKEV-------------CHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCS 341
+ K+V LPL SL LA ML+KI +LKAQSKI+ +EIHSI+++PS
Sbjct: 281 QSRKDVSLTRGELELAMAMSQLPLASLHLALMLQKIASLKAQSKILPKEIHSINVNPSSP 340
Query: 342 YQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVG 401
+QLAFHLDDGWSGVLD+Y S V+HVHCPPPAWL S++SAD L LRKPSWL +SIY VG
Sbjct: 341 HQLAFHLDDGWSGVLDIYKSEVTHVHCPPPAWLDGSDSSAD-LILRKPSWLPASSIYVVG 399
Query: 402 SSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN 461
S S+ GIH+LDF P S SP HVDY+ED + +R + N+FV LSE VT C HPLN
Sbjct: 400 SMSEKGIHVLDFHPSSRSPCHVDYDEDTQRNEKRDRCNHSNKFVSLSETVTGCAAHPLNG 459
Query: 462 TIVAGTKNSSLLVVSQKQQCTSDS 485
IVAGT+NSSLLV++Q+ C+S S
Sbjct: 460 MIVAGTQNSSLLVIAQR-HCSSSS 482
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224053382|ref|XP_002297792.1| predicted protein [Populus trichocarpa] gi|222845050|gb|EEE82597.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 245/377 (64%), Positives = 296/377 (78%), Gaps = 19/377 (5%)
Query: 107 KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA 166
+GIYLVS T+SGCLTVHDFESLY Q N + P ED+SKH+LH L +QLD+VRWNLA
Sbjct: 47 QGIYLVSVTKSGCLTVHDFESLYCQANDSFPYERKCEDESKHVLHNSLGRQLDSVRWNLA 106
Query: 167 NQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSR 226
NQDEVAC S ++N V I+DIGYIS EPVEVLKTRR+VTV GSD+ KGL+D+AF++ SR
Sbjct: 107 NQDEVACTSMKTNEVQIFDIGYISSEPVEVLKTRRAVTVHGSDIHKGLTDIAFTS--ESR 164
Query: 227 LIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLR 286
LIASDT+G VN+WDRR+ LP LEL++ S TLNSI+L+ ENQ++F AG+HG +Y+WDLR
Sbjct: 165 LIASDTNGGVNVWDRRMSALPCLELTSNSRSTLNSIKLNVENQMVFGAGRHGIVYMWDLR 224
Query: 287 GGRTSAPFHNHKEV-------------CHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHS 333
GGR + F HKEV CH P+TS KL+SMLE+IG+LKAQS IVS+E+HS
Sbjct: 225 GGRAPSAFQIHKEVSSWALDKLQIMVMCHPPVTSWKLSSMLERIGSLKAQSDIVSKEVHS 284
Query: 334 IDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLS 393
ID DPSC YQLAFHLDDGWSG+LD+YN +V+HVHCPPPAWL+ S D L LRKPSWL+
Sbjct: 285 IDFDPSCPYQLAFHLDDGWSGILDIYNFQVTHVHCPPPAWLNGS--FTDLLSLRKPSWLA 342
Query: 394 TNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYN--EDIESLSERTKLKKENRFVPLSEGV 451
T+SIY VGSS+D+GIHLLDF+P SSP HVDY+ ED E S + K+NRF+PLSEGV
Sbjct: 343 THSIYVVGSSTDNGIHLLDFYPDPSSPCHVDYSPIEDAERPSRVNRRNKQNRFIPLSEGV 402
Query: 452 TACVTHPLNNTIVAGTK 468
TAC HPLN TI+AGT+
Sbjct: 403 TACAAHPLNGTIIAGTQ 419
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334187643|ref|NP_001190298.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|332004448|gb|AED91831.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 486 bits (1251), Expect = e-134, Method: Compositional matrix adjust.
Identities = 249/494 (50%), Positives = 329/494 (66%), Gaps = 52/494 (10%)
Query: 24 WKRSVVELNGRFESKYRHDLSALLMQSYSQIGAFPHLYHVDRVLCPTHEGIVNSQRSRAG 83
WKRS++E+NGR +S YRH+L + + SYS+IG F H YH++ C TH
Sbjct: 74 WKRSLIEVNGRLDSAYRHELYSRVAHSYSEIGKFSHFYHLNENPCITH------------ 121
Query: 84 DVAMIDHRRSFGKP---GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVG 140
M+ + + P G++ LDFD +GI+LVS TRSGCL VHDFESLY C L G G
Sbjct: 122 ---MMQIQSLYQCPTMRGVAGLDFDNRGIFLVSVTRSGCLMVHDFESLY--CQSKL-GPG 175
Query: 141 LKEDQSKHLLHIPLP--QQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVE--- 195
ED+SKH++H P ++ D RWN +NQ+EVAC S + + V I+DI Y+S +P E
Sbjct: 176 SAEDESKHVVHFSYPPGREFDVARWNPSNQNEVACTSRKHDQVLIFDISYMSPKPTEKQE 235
Query: 196 ------------------------VLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD 231
VL+TR+ ++++G + +GLSD+A ++ SR+ + D
Sbjct: 236 TQMYRRISILGNCKIPVPTWFPKSVLQTRQKLSIIGRKISRGLSDVAITSDEDSRIFSPD 295
Query: 232 THGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTS 291
T G+V++WDRR GV P +ELST + ++ SIQ++ +NQ IF AGK G I++WDLRGGR S
Sbjct: 296 TLGMVHVWDRRAGVSPCIELSTDRYDSIKSIQIYVDNQTIFGAGKEGIIHIWDLRGGRNS 355
Query: 292 APFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDG 351
+ F + K++ LPL SL LA L+KI +LKAQS+IV +EIHSID++PS +QLAFHLDDG
Sbjct: 356 SAFQSRKDMSQLPLASLHLAPKLQKIASLKAQSEIVPKEIHSIDVNPSSPHQLAFHLDDG 415
Query: 352 WSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLL 411
WSGVLD+Y S V+HVHCPPPAWL SN+SAD L LRKPSWL T+SIY VGS S+ GIH+L
Sbjct: 416 WSGVLDIYKSEVTHVHCPPPAWLDGSNSSAD-LILRKPSWLPTSSIYVVGSMSEKGIHVL 474
Query: 412 DFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSS 471
DF P S SP HVDY+ED + +R K N+FV LSE VT C HPLN IVAGT+NSS
Sbjct: 475 DFHPSSRSPCHVDYDEDTQRNEKRDKCNHRNKFVSLSETVTGCAAHPLNGMIVAGTQNSS 534
Query: 472 LLVVSQKQQCTSDS 485
LL+++Q C+S S
Sbjct: 535 LLLIAQ-MHCSSSS 547
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|238481257|ref|NP_001154711.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|332004447|gb|AED91830.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 480 bits (1236), Expect = e-133, Method: Compositional matrix adjust.
Identities = 251/497 (50%), Positives = 330/497 (66%), Gaps = 40/497 (8%)
Query: 24 WKRSVVELNGRFESKYRHDLSALLMQSYSQIGAFPHLYHVDRVLCPTHEGIVNS--QRSR 81
WKRS++E+NGR +S YRH+L + + SYS+IG F H YH++ C TH + S Q
Sbjct: 74 WKRSLIEVNGRLDSAYRHELYSRVAHSYSEIGKFSHFYHLNENPCITHMMQIQSLYQCPT 133
Query: 82 AGDVAMIDH----RRSFGKPGISALDFDC--------------KGIYLVSATRSGCLTVH 123
VA +D R G+ ++ C +GI+LVS TRSGCL VH
Sbjct: 134 MRGVAGLDFDNRVRSLINTFGLVSVHVQCYFIISDLCLRDSSHQGIFLVSVTRSGCLMVH 193
Query: 124 DFESLYYQCNGTLPGVGLKEDQSKHLLHIPLP--QQLDAVRWNLANQDEVACASTRSNVV 181
DFESLY C L G G ED+SKH++H P ++ D RWN +NQ+EVAC S + + V
Sbjct: 194 DFESLY--CQSKL-GPGSAEDESKHVVHFSYPPGREFDVARWNPSNQNEVACTSRKHDQV 250
Query: 182 SIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDR 241
I+DI Y+S +P EVL+TR+ ++++G + +GLSD+A ++ SR+ + DT G+V++WDR
Sbjct: 251 LIFDISYMSPKPTEVLQTRQKLSIIGRKISRGLSDVAITSDEDSRIFSPDTLGMVHVWDR 310
Query: 242 RVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEV- 300
R GV P +ELST + ++ SIQ++ +NQ IF AGK G I++WDLRGGR S+ F + K+V
Sbjct: 311 RAGVSPCIELSTDRYDSIKSIQIYVDNQTIFGAGKEGIIHIWDLRGGRNSSAFQSRKDVS 370
Query: 301 ------------CHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHL 348
LPL SL LA L+KI +LKAQS+IV +EIHSID++PS +QLAFHL
Sbjct: 371 LTRGELELAMAMSQLPLASLHLAPKLQKIASLKAQSEIVPKEIHSIDVNPSSPHQLAFHL 430
Query: 349 DDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGI 408
DDGWSGVLD+Y S V+HVHCPPPAWL SN+SAD L LRKPSWL T+SIY VGS S+ GI
Sbjct: 431 DDGWSGVLDIYKSEVTHVHCPPPAWLDGSNSSAD-LILRKPSWLPTSSIYVVGSMSEKGI 489
Query: 409 HLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTK 468
H+LDF P S SP HVDY+ED + +R K N+FV LSE VT C HPLN IVAGT+
Sbjct: 490 HVLDFHPSSRSPCHVDYDEDTQRNEKRDKCNHRNKFVSLSETVTGCAAHPLNGMIVAGTQ 549
Query: 469 NSSLLVVSQKQQCTSDS 485
NSSLL+++Q C+S S
Sbjct: 550 NSSLLLIAQ-MHCSSSS 565
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357444359|ref|XP_003592457.1| hypothetical protein MTR_1g105170 [Medicago truncatula] gi|355481505|gb|AES62708.1| hypothetical protein MTR_1g105170 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 230/404 (56%), Positives = 292/404 (72%), Gaps = 30/404 (7%)
Query: 96 KPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLP 155
K G+S++DFD KGIYL S T+SGCLTVHDFE+LY L ED+SK LLH+
Sbjct: 26 KKGVSSVDFDNKGIYLASVTKSGCLTVHDFEALY----------CLPEDESKLLLHLSPD 75
Query: 156 QQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLS 215
QLD V+WN NQ+EV C S + N + I+D+ Y+ EP+E L+TR + TV GS++ KGLS
Sbjct: 76 SQLDVVKWNPLNQNEVLCGSLKRNALLIFDVTYMMSEPIEELRTRTTTTVNGSNIPKGLS 135
Query: 216 DLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAG 275
D+AF A + SR+ SDTHG +N+WDRRV LP LEL++ S GTLNS+QL AENQII+ AG
Sbjct: 136 DVAF-ASDDSRIFGSDTHGTINVWDRRVKSLPCLELTSASFGTLNSVQLDAENQIIYGAG 194
Query: 276 KHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLK-------------- 321
+HG +Y+WD+RGGR S F +HKE CH P+TS+KLA++LEKIG+LK
Sbjct: 195 RHGIVYVWDIRGGRASTAFLSHKETCHPPVTSVKLATLLEKIGSLKKCVSAETGVILVET 254
Query: 322 -----AQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSD 376
AQ++IV +EI SI L+PSC YQLAFHL+DGWSG+LD+ V+H+HCPPPAWL+D
Sbjct: 255 EKAFDAQTEIVPKEIQSIGLNPSCPYQLAFHLEDGWSGILDINKFEVTHIHCPPPAWLND 314
Query: 377 SNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERT 436
S S DQ+ LRKPSWLST S+Y GS D G+H+LDF+P +SPSHVDY EDI+ LS T
Sbjct: 315 SYASLDQMDLRKPSWLSTCSVYLAGSPFDRGLHMLDFYPSINSPSHVDYKEDIQELSNPT 374
Query: 437 KLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQ 480
K K +NRF+ L E V +C HPL N IVAGTK +SLLV+SQK++
Sbjct: 375 KQKNQNRFIHLPEEVLSCAAHPLYNAIVAGTKETSLLVISQKRK 418
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 489 | ||||||
| TAIR|locus:2182330 | 572 | AT5G12920 "AT5G12920" [Arabido | 0.862 | 0.737 | 0.508 | 2.4e-127 | |
| POMBASE|SPCC16C4.08c | 341 | skb15 "p21 activated protein k | 0.382 | 0.548 | 0.252 | 0.00032 |
| TAIR|locus:2182330 AT5G12920 "AT5G12920" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1122 (400.0 bits), Expect = 2.4e-127, Sum P(2) = 2.4e-127
Identities = 229/450 (50%), Positives = 301/450 (66%)
Query: 59 HLYHVDRVL-CPTHEGIV-----NSQRSRAGDVAMID-HRRS-FGKPGISALDFDCKGIY 110
H+ + + CPT G+ N RS ++ H + F + D +GI+
Sbjct: 121 HMMQIQSLYQCPTMRGVAGLDFDNRVRSLINTFGLVSVHVQCYFIISDLCLRDSSHQGIF 180
Query: 111 LVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLP--QQLDAVRWNLANQ 168
LVS TRSGCL VHDFESLY C L G G ED+SKH++H P ++ D RWN +NQ
Sbjct: 181 LVSVTRSGCLMVHDFESLY--CQSKL-GPGSAEDESKHVVHFSYPPGREFDVARWNPSNQ 237
Query: 169 DEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLI 228
+EVAC S + + V I+DI Y+S +P EVL+TR+ ++++G + +GLSD+A ++ SR+
Sbjct: 238 NEVACTSRKHDQVLIFDISYMSPKPTEVLQTRQKLSIIGRKISRGLSDVAITSDEDSRIF 297
Query: 229 ASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGG 288
+ DT G+V++WDRR GV P +ELST + ++ SIQ++ +NQ IF AGK G I++WDLRGG
Sbjct: 298 SPDTLGMVHVWDRRAGVSPCIELSTDRYDSIKSIQIYVDNQTIFGAGKEGIIHIWDLRGG 357
Query: 289 RTSAPFHNHKEVC-------------HLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSID 335
R S+ F + K+V LPL SL LA L+KI +LKAQS+IV +EIHSID
Sbjct: 358 RNSSAFQSRKDVSLTRGELELAMAMSQLPLASLHLAPKLQKIASLKAQSEIVPKEIHSID 417
Query: 336 LDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTN 395
++PS +QLAFHLDDGWSGVLD+Y S V+HVHCPPPAWL SN+SAD L LRKPSWL T+
Sbjct: 418 VNPSSPHQLAFHLDDGWSGVLDIYKSEVTHVHCPPPAWLDGSNSSAD-LILRKPSWLPTS 476
Query: 396 SIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACV 455
SIY VGS S+ GIH+LDF P S SP HVDY+ED + +R K N+FV LSE VT C
Sbjct: 477 SIYVVGSMSEKGIHVLDFHPSSRSPCHVDYDEDTQRNEKRDKCNHRNKFVSLSETVTGCA 536
Query: 456 THPLNNTIVAGTKNSSLLVVSQKQQCTSDS 485
HPLN IVAGT+NSSLL+++Q C+S S
Sbjct: 537 AHPLNGMIVAGTQNSSLLLIAQ-MHCSSSS 565
|
|
| POMBASE|SPCC16C4.08c skb15 "p21 activated protein kinase inhibitor Skb15" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 119 (46.9 bits), Expect = 0.00032, P = 0.00032
Identities = 51/202 (25%), Positives = 84/202 (41%)
Query: 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTV----VGSDVQKG-LSDLAFSAVNTSRLI 228
A T V IY SDE +++ R+V + V +D+ + D+ F+ + L+
Sbjct: 37 ALTALAVDGIYLASTSSDETIKIFDHTRNVQIADVSVPTDIANACIRDMCFTK---NHLL 93
Query: 229 ASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDL-RG 287
A +G +++W + +L L + SH + I +H ++ G G + LWDL RG
Sbjct: 94 ACHDNGQISMWSKGSWLLVHT-LKSSSHKGITGIAVHPSEKLALTVGGDGKLRLWDLVRG 152
Query: 288 -GRTSAPFHNHKE-VCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQ-- 343
G P E + L +S + S I K + L+ C YQ
Sbjct: 153 KGGKVLPLSTIPESILFLNESSFVIMSR-RGIDAFKLDLTSLFSFSSKSQLNALCLYQSK 211
Query: 344 LAFHLDDGWSGVLDVYNSRVSH 365
L D+G VLD + ++ H
Sbjct: 212 LIVGRDNGTVLVLDTSDGKILH 233
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.394 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 489 489 0.00082 119 3 11 22 0.41 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 2
No. of states in DFA: 620 (66 KB)
Total size of DFA: 308 KB (2158 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 41.46u 0.13s 41.59t Elapsed: 00:00:02
Total cpu time: 41.46u 0.13s 41.59t Elapsed: 00:00:02
Start: Fri May 10 23:07:46 2013 End: Fri May 10 23:07:48 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00024653001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (462 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 489 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 8e-05 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-04 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 8e-05
Identities = 40/202 (19%), Positives = 79/202 (39%), Gaps = 34/202 (16%)
Query: 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQ 157
+S++ F G L S++R + V D E+ +C TL G H
Sbjct: 95 YVSSVAFSPDGRILSSSSRDKTIKVWDVET--GKCLTTLRG---------HT------DW 137
Query: 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDL 217
+++V ++ +S++ + ++D+ V L ++ +
Sbjct: 138 VNSVAFSPDGT--FVASSSQDGTIKLWDLRTGK--CVATLTGH----------TGEVNSV 183
Query: 218 AFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKH 277
AFS + +L++S + G + +WD G L G +NS+ + ++ + +
Sbjct: 184 AFSP-DGEKLLSSSSDGTIKLWDLSTGKC--LGTLRGHENGVNSVAFSPDGYLLASGSED 240
Query: 278 GSIYLWDLRGGRTSAPFHNHKE 299
G+I +WDLR G H
Sbjct: 241 GTIRVWDLRTGECVQTLSGHTN 262
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 42/203 (20%), Positives = 75/203 (36%), Gaps = 38/203 (18%)
Query: 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQ 157
G++ + F G L + + G + V D E+ TL G H
Sbjct: 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR--TLKG------------HT---GP 53
Query: 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDL 217
+ V A+ +A S+ + ++D+ + E V L +S +
Sbjct: 54 VRDVAA-SADGTYLASGSS-DKTIRLWDLE--TGECVRTLT----------GHTSYVSSV 99
Query: 218 AFSAVNTSRLI-ASDTHGVVNIWDRRVGVLPSLELSTGSH-GTLNSIQLHAENQIIFAAG 275
AFS R++ +S + +WD G + H +NS+ + + ++
Sbjct: 100 AFS--PDGRILSSSSRDKTIKVWDVETGK---CLTTLRGHTDWVNSVAFSPDGTFVASSS 154
Query: 276 KHGSIYLWDLRGGRTSAPFHNHK 298
+ G+I LWDLR G+ A H
Sbjct: 155 QDGTIKLWDLRTGKCVATLTGHT 177
|
Length = 289 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 489 | |||
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.98 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.98 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.98 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 99.98 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.97 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.97 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.97 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.97 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.97 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.96 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.96 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.96 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| PTZ00421 | 493 | coronin; Provisional | 99.95 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.95 | |
| PTZ00420 | 568 | coronin; Provisional | 99.95 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.95 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.95 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.94 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.94 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.94 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 99.94 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.94 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.94 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.94 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.93 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.93 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.93 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.93 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.93 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.93 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.92 | |
| PTZ00421 | 493 | coronin; Provisional | 99.92 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.92 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.92 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.92 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.92 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.92 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.92 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.91 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.91 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.91 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.91 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.91 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.91 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.91 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.9 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.9 | |
| PTZ00420 | 568 | coronin; Provisional | 99.9 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.9 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.9 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.9 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.9 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.9 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.9 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.89 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.89 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.89 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.89 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.89 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.88 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.88 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.88 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.88 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.88 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.88 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.87 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.87 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.87 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.87 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.86 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.86 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.86 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 99.86 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.85 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.85 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.85 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.85 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.84 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.84 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.84 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.84 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.84 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.84 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.84 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.83 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.83 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.83 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.83 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.82 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.82 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.82 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.82 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.81 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.81 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.81 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.79 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.79 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.79 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.78 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.77 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.76 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.76 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.76 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.75 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.74 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.74 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.74 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.74 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.73 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.73 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.73 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.72 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.72 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.72 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.7 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.7 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.67 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.67 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.66 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.66 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.66 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.65 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.65 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.64 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.63 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.63 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.62 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.61 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.6 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.6 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.6 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.6 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.59 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.57 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.57 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.57 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.57 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.57 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.56 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.55 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.53 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.53 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.52 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.51 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.5 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.5 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.49 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.47 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.47 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.42 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.41 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.41 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.41 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.4 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.39 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.39 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.38 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.34 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.33 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.33 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.33 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.32 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.32 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.31 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.3 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.3 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.28 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 99.26 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.24 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.23 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.22 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.21 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.21 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.19 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.18 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.17 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.15 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 99.12 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.09 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.09 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.08 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 99.07 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.07 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.07 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.06 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.05 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.05 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.02 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.01 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.01 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.0 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.99 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.97 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.96 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.95 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.94 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.93 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.93 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.91 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.89 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.88 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.87 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.84 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.83 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.82 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 98.81 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.8 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.79 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.79 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.78 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.78 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.77 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.74 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.67 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.65 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.65 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.62 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.61 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.58 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 98.57 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.56 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.55 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.55 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.55 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.53 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.51 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.49 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.48 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.47 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.47 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.45 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.41 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.39 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.38 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.37 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.37 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.23 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 98.23 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.08 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.08 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.02 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.01 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.0 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.89 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.88 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.87 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.84 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.83 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.78 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.78 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 97.77 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 97.72 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.7 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.69 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.68 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.66 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.65 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.6 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.59 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.49 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.49 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.48 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.45 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 97.43 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.4 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.33 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.32 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 97.26 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.22 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.22 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.19 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.12 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.07 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.03 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.02 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.0 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 96.99 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.95 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.95 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 96.87 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 96.85 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.73 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.73 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.7 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.7 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.66 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 96.63 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 96.57 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.54 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 96.54 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 96.52 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.39 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.25 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.21 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.21 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.03 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 96.02 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 96.0 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 95.98 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 95.64 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.57 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.44 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 95.33 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 95.32 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 95.26 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 95.25 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 95.2 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.07 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 95.04 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 95.03 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 95.0 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 94.88 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 94.85 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 94.63 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 94.62 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 94.5 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 94.33 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 94.25 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 93.93 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 93.66 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 93.51 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 93.43 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.39 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 93.34 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 93.33 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 93.33 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 93.3 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 93.21 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 93.15 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 93.02 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 93.0 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 92.95 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 91.65 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 91.46 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 91.0 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 90.12 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 89.9 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 89.83 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 89.13 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 88.78 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 88.01 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 87.89 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 87.83 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 87.56 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 87.29 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 86.85 | |
| TIGR02276 | 42 | beta_rpt_yvtn 40-residue YVTN family beta-propelle | 86.75 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 86.7 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 86.7 | |
| PF11635 | 753 | Med16: Mediator complex subunit 16; InterPro: IPR0 | 86.16 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 86.09 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 85.59 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 85.24 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 85.01 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 84.99 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 84.79 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 84.7 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 84.56 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 84.51 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 84.31 | |
| PRK10115 | 686 | protease 2; Provisional | 84.25 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 83.97 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 83.72 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 83.18 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 81.8 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 81.69 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 81.16 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 81.0 | |
| PF12768 | 281 | Rax2: Cortical protein marker for cell polarity | 80.97 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 80.72 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 80.06 |
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-48 Score=336.91 Aligned_cols=306 Identities=18% Similarity=0.287 Sum_probs=259.9
Q ss_pred ccccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 91 RRSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
.+..|.+.|.|++|+|+|..||+|+.|.++|+||+.+..... +...|..+ |.|++|+||++ .
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~--------t~KgH~~W---------VlcvawsPDgk-~ 171 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF--------TCKGHKNW---------VLCVAWSPDGK-K 171 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce--------eecCCccE---------EEEEEECCCcc-h
Confidence 356677889999999999999999999999999999855444 45566666 99999999996 9
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCC----cEEEEEeCCCcEEEEECCCCCc
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT----SRLIASDTHGVVNIWDRRVGVL 246 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----~~l~s~s~dg~i~iwd~~~~~~ 246 (489)
|++|+.| |+|++||...+... ..++.+|...|++++|.|-+. .+|++++.||.|+|||+..+.
T Consensus 172 iASG~~d-g~I~lwdpktg~~~-----------g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~- 238 (480)
T KOG0271|consen 172 IASGSKD-GSIRLWDPKTGQQI-----------GRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT- 238 (480)
T ss_pred hhccccC-CeEEEecCCCCCcc-----------cccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-
Confidence 9999999 99999998544322 223489999999999987431 389999999999999999877
Q ss_pred CceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCC-----------Cc
Q 037120 247 PSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASM-----------LE 315 (489)
Q Consensus 247 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-----------~~ 315 (489)
++..+.+|+.+|+|+.|--+| ++++|+.|++|++|+...|++...+++|... |+.++.+.| +.
T Consensus 239 -~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHahw----vN~lalsTdy~LRtgaf~~t~~ 312 (480)
T KOG0271|consen 239 -CVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAHW----VNHLALSTDYVLRTGAFDHTGR 312 (480)
T ss_pred -EEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccchh----eeeeeccchhhhhccccccccc
Confidence 888888999999999997554 7889999999999999999999999999988 999887732 32
Q ss_pred c-------------------------eeec-----------------cccceeeccceeEEEeCCCCCeEEEEEecCC--
Q 037120 316 K-------------------------IGTL-----------------KAQSKIVSQEIHSIDLDPSCSYQLAFHLDDG-- 351 (489)
Q Consensus 316 ~-------------------------i~~~-----------------~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~-- 351 (489)
. +.+. ......|+..|..+.|+||+++++.++.|..
T Consensus 313 ~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVk 392 (480)
T KOG0271|consen 313 KPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVK 392 (480)
T ss_pred cCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeeccccee
Confidence 2 1110 0123355778999999999999999999988
Q ss_pred -ce----EEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccC
Q 037120 352 -WS----GVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYN 426 (489)
Q Consensus 352 -w~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~ 426 (489)
|. +.+..+.||+..+|.+ +|+.+ .+++++||.|.+++|||+.+.
T Consensus 393 LW~g~tGk~lasfRGHv~~VYqv--awsaD-------------------sRLlVS~SkDsTLKvw~V~tk---------- 441 (480)
T KOG0271|consen 393 LWDGRTGKFLASFRGHVAAVYQV--AWSAD-------------------SRLLVSGSKDSTLKVWDVRTK---------- 441 (480)
T ss_pred eeeCCCcchhhhhhhccceeEEE--EeccC-------------------ccEEEEcCCCceEEEEEeeee----------
Confidence 64 6677888999999888 88888 889999999999999999999
Q ss_pred cccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 427 EDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
+....+. ||.+.|.++.|+|+|..+++|+.|..+++|.
T Consensus 442 Kl~~DLp------------Gh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 442 KLKQDLP------------GHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eecccCC------------CCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 7777777 9999999999999999999999999999996
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=301.61 Aligned_cols=284 Identities=16% Similarity=0.158 Sum_probs=230.3
Q ss_pred CCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC-CCCEEEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA-NQDEVAC 173 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~-~~~~l~s 173 (489)
....|..+.|+++++.||||+.+|.++||+.... .....+.+|+.. |.++.|+|. ....+++
T Consensus 174 d~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~--------------~~~~~l~gH~~~---v~~~~fhP~~~~~~lat 236 (459)
T KOG0272|consen 174 DTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC--------------NLLQTLRGHTSR---VGAAVFHPVDSDLNLAT 236 (459)
T ss_pred CCCcceeeEeecCCCeEEEeecCCceeEeecCCc--------------ceeEEEeccccc---eeeEEEccCCCccceee
Confidence 4456999999999999999999999999999883 223345778888 888999999 4668999
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST 253 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 253 (489)
++.| |++++|++... ..+..+.+|...|..++|+|+|+ +|+|++.|.+-++||++++. .+-...
T Consensus 237 ~s~D-gtvklw~~~~e------------~~l~~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~--ElL~QE 300 (459)
T KOG0272|consen 237 ASAD-GTVKLWKLSQE------------TPLQDLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKS--ELLLQE 300 (459)
T ss_pred eccC-CceeeeccCCC------------cchhhhhcchhhheeeeecCCCc-eeeecccccchhhcccccch--hhHhhc
Confidence 9999 99999999322 22334589999999999999999 99999999999999999976 344567
Q ss_pred CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeE
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHS 333 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~ 333 (489)
+|+..|.+++|+|||.++++||.|..-+|||+|+|+++..+.+|... |.+|+|+|+|..++
T Consensus 301 GHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~----I~~V~fsPNGy~lA--------------- 361 (459)
T KOG0272|consen 301 GHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKE----ILSVAFSPNGYHLA--------------- 361 (459)
T ss_pred ccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccc----eeeEeECCCceEEe---------------
Confidence 99999999999999999999999999999999999999999998876 77766666655444
Q ss_pred EEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEec
Q 037120 334 IDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDF 413 (489)
Q Consensus 334 ~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~ 413 (489)
+++.|+. .+++++..... ++.++..- -.+..+.|.|..+.+|+|+|.|++++||.-
T Consensus 362 -----------Tgs~Dnt-~kVWDLR~r~~--ly~ipAH~----------nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~ 417 (459)
T KOG0272|consen 362 -----------TGSSDNT-CKVWDLRMRSE--LYTIPAHS----------NLVSQVKYSPQEGYFLVTASYDNTVKIWST 417 (459)
T ss_pred -----------ecCCCCc-EEEeeeccccc--ceeccccc----------chhhheEecccCCeEEEEcccCcceeeecC
Confidence 4444443 12333332221 22221111 112346788888999999999999999999
Q ss_pred cCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 414 FPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
.+. ..++.+. ||++.|.+++.+|++..|+|++.|.++++|.
T Consensus 418 ~~~----------~~~ksLa------------GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 418 RTW----------SPLKSLA------------GHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CCc----------ccchhhc------------CCccceEEEEeccCCceEEEeccCceeeecc
Confidence 988 8888888 9999999999999999999999999999996
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=265.52 Aligned_cols=293 Identities=19% Similarity=0.229 Sum_probs=230.9
Q ss_pred ccccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 91 RRSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
.+..|...|.++.|++|.++|++++.||.+.|||.-+...+. .+.-...+ |..++|+|.++ .
T Consensus 50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h--------aipl~s~W---------VMtCA~sPSg~-~ 111 (343)
T KOG0286|consen 50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH--------AIPLPSSW---------VMTCAYSPSGN-F 111 (343)
T ss_pred EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee--------EEecCcee---------EEEEEECCCCC-e
Confidence 467788889999999999999999999999999987743333 12333446 99999999985 9
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
+++|+.| +...||++.....+ ...+..+. +.+|+.-+.++.|.+|+ +|+|+|.|.++.+||+++++ .++
T Consensus 112 VAcGGLd-N~Csiy~ls~~d~~--g~~~v~r~----l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~--~~~ 180 (343)
T KOG0286|consen 112 VACGGLD-NKCSIYPLSTRDAE--GNVRVSRE----LAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQ--QTQ 180 (343)
T ss_pred EEecCcC-ceeEEEeccccccc--ccceeeee----ecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccce--EEE
Confidence 9999999 99999999643222 12222333 48999999999999855 69999999999999999988 677
Q ss_pred eccCCCCceeEEEEee-cCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeecc
Q 037120 251 LSTGSHGTLNSIQLHA-ENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQ 329 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p-~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~ 329 (489)
.+.+|.+.|.+++++| +++.+++|+.|++.+|||+|.+.+.++|.+|+.- |++++|.|+|..+++-..
T Consensus 181 ~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesD----INsv~ffP~G~afatGSD------- 249 (343)
T KOG0286|consen 181 VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESD----INSVRFFPSGDAFATGSD------- 249 (343)
T ss_pred EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccc----cceEEEccCCCeeeecCC-------
Confidence 7889999999999999 9999999999999999999999999999999977 999999999987765221
Q ss_pred ceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEE
Q 037120 330 EIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIH 409 (489)
Q Consensus 330 ~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~ 409 (489)
+.-.++.++...+...+|....... .+..+.|+-. ++++.+|..|.++.
T Consensus 250 --------------------D~tcRlyDlRaD~~~a~ys~~~~~~----------gitSv~FS~S-GRlLfagy~d~~c~ 298 (343)
T KOG0286|consen 250 --------------------DATCRLYDLRADQELAVYSHDSIIC----------GITSVAFSKS-GRLLFAGYDDFTCN 298 (343)
T ss_pred --------------------CceeEEEeecCCcEEeeeccCcccC----------CceeEEEccc-ccEEEeeecCCcee
Confidence 1111233333333333332111100 1112233333 77888889999999
Q ss_pred EEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 410 LLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 410 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
|||.-.+ +.+..+. ||++.|.++..+|+|..+++||+|..++||+
T Consensus 299 vWDtlk~----------e~vg~L~------------GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 299 VWDTLKG----------ERVGVLA------------GHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred Eeecccc----------ceEEEee------------ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 9999988 8888888 9999999999999999999999999999995
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=252.14 Aligned_cols=289 Identities=13% Similarity=0.176 Sum_probs=226.1
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..++..|.++.|+|+|.+||+|+.|..|.+|++.. ..+.-..+.+|.+. |..+.|.+++. .+
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g-------------dceN~~~lkgHsgA---VM~l~~~~d~s-~i 105 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYG-------------DCENFWVLKGHSGA---VMELHGMRDGS-HI 105 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccc-------------cccceeeeccccce---eEeeeeccCCC-EE
Confidence 455666799999999999999999999999999765 23333334688888 88899999986 67
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++.| .+|+.||+..+.. .+. +.+|..-|+++.-+.-|.-++.+++.|+++++||+|+.+ ++++
T Consensus 106 ~S~gtD-k~v~~wD~~tG~~--------~rk----~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~--~~~t 170 (338)
T KOG0265|consen 106 LSCGTD-KTVRGWDAETGKR--------IRK----HKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKE--AIKT 170 (338)
T ss_pred EEecCC-ceEEEEeccccee--------eeh----hccccceeeecCccccCCeEEEecCCCceEEEEeecccc--hhhc
Confidence 777777 9999999954421 222 278999999998776777688899999999999999865 5655
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
+ ...-+++++.|..++..+++|+-|+.|++||+|....++.+.+|.+. |+.+..+++|.++.+....... .+
T Consensus 171 ~-~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~Dt----It~lsls~~gs~llsnsMd~tv---rv 242 (338)
T KOG0265|consen 171 F-ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADT----ITGLSLSRYGSFLLSNSMDNTV---RV 242 (338)
T ss_pred c-ccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCc----eeeEEeccCCCccccccccceE---EE
Confidence 5 23578999999999999999999999999999999999999999988 9999999999888753322221 22
Q ss_pred eEEE-eCCCCCeEEEEEecCCceEEEEeeccceeeec--CCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcE
Q 037120 332 HSID-LDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVH--CPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGI 408 (489)
Q Consensus 332 ~~~~-~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i 408 (489)
+.+. |.|.. +.+.++.|+..... ...+.|++. +.++..|+.|..+
T Consensus 243 wd~rp~~p~~-------------R~v~if~g~~hnfeknlL~cswsp~-------------------~~~i~ags~dr~v 290 (338)
T KOG0265|consen 243 WDVRPFAPSQ-------------RCVKIFQGHIHNFEKNLLKCSWSPN-------------------GTKITAGSADRFV 290 (338)
T ss_pred EEecccCCCC-------------ceEEEeecchhhhhhhcceeeccCC-------------------CCccccccccceE
Confidence 2222 22222 23444444433221 122244444 6788899999999
Q ss_pred EEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEE
Q 037120 409 HLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLV 474 (489)
Q Consensus 409 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v 474 (489)
++||..+. ..+..+. ||.+.|++++|||..++|.+++.|.+|.+
T Consensus 291 yvwd~~~r----------~~lyklp------------Gh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 291 YVWDTTSR----------RILYKLP------------GHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred EEeecccc----------cEEEEcC------------CcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 99999998 8888888 99999999999999999999999999876
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=259.64 Aligned_cols=270 Identities=16% Similarity=0.197 Sum_probs=211.2
Q ss_pred cccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEE
Q 037120 148 HLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRL 227 (489)
Q Consensus 148 ~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 227 (489)
+.||... |.|++|+|++. .|++|+.| .++++||+... ....+..+|...|.+++|+|||+ .|
T Consensus 111 ~~GH~e~---Vl~~~fsp~g~-~l~tGsGD-~TvR~WD~~Te------------Tp~~t~KgH~~WVlcvawsPDgk-~i 172 (480)
T KOG0271|consen 111 IAGHGEA---VLSVQFSPTGS-RLVTGSGD-TTVRLWDLDTE------------TPLFTCKGHKNWVLCVAWSPDGK-KI 172 (480)
T ss_pred cCCCCCc---EEEEEecCCCc-eEEecCCC-ceEEeeccCCC------------CcceeecCCccEEEEEEECCCcc-hh
Confidence 3566666 99999999886 88888888 99999999432 12333489999999999999999 99
Q ss_pred EEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEee-----cCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCC
Q 037120 228 IASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHA-----ENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCH 302 (489)
Q Consensus 228 ~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p-----~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~ 302 (489)
++|+.||+|++||..+++. ..+.+.+|...|++++|.| ..+++++++.||.|+|||+..+.++..+.+|..+
T Consensus 173 ASG~~dg~I~lwdpktg~~-~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~-- 249 (480)
T KOG0271|consen 173 ASGSKDGSIRLWDPKTGQQ-IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTAS-- 249 (480)
T ss_pred hccccCCeEEEecCCCCCc-ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccc--
Confidence 9999999999999998864 3456779999999999976 6678999999999999999999999999999977
Q ss_pred CCeeEEEeCCCCcce---------------eeccccceeeccceeEEEeC-----------CCCCe--------------
Q 037120 303 LPLTSLKLASMLEKI---------------GTLKAQSKIVSQEIHSIDLD-----------PSCSY-------------- 342 (489)
Q Consensus 303 ~~v~~l~~~~~~~~i---------------~~~~~~~~~~~~~i~~~~~~-----------p~~~~-------------- 342 (489)
|++++|-.+|-.. +.+......|...|..++++ |.+.+
T Consensus 250 --VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~r 327 (480)
T KOG0271|consen 250 --VTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALER 327 (480)
T ss_pred --eEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHH
Confidence 9999998766433 11223445566677777765 22222
Q ss_pred -----------EEEEEecCC---ce-----EEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeec
Q 037120 343 -----------QLAFHLDDG---WS-----GVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSS 403 (489)
Q Consensus 343 -----------~~~~~~~~~---w~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs 403 (489)
++.++-|.+ |. +.+..+.||..-+ ..+.|+|+ ++|++++|
T Consensus 328 Y~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lV--------------------n~V~fSPd-~r~IASaS 386 (480)
T KOG0271|consen 328 YEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALV--------------------NHVSFSPD-GRYIASAS 386 (480)
T ss_pred HHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhhe--------------------eeEEECCC-ccEEEEee
Confidence 333333333 42 2233444544333 33444444 78999999
Q ss_pred CCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccccccc
Q 037120 404 SDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQCTS 483 (489)
Q Consensus 404 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~~~ 483 (489)
-|..|++||..++ +.+..+. ||-+.|..|+|+.+...+++||.|.++.||..+.+.+.
T Consensus 387 FDkSVkLW~g~tG----------k~lasfR------------GHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 387 FDKSVKLWDGRTG----------KFLASFR------------GHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLK 444 (480)
T ss_pred cccceeeeeCCCc----------chhhhhh------------hccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeec
Confidence 9999999999999 8888877 99999999999999999999999999999988877653
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=281.88 Aligned_cols=261 Identities=13% Similarity=0.180 Sum_probs=217.6
Q ss_pred ccccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcc--cccC---CCCC---------CCC---CcccccccccCCC
Q 037120 91 RRSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLY--YQCN---GTLP---------GVG---LKEDQSKHLLHIP 153 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~--~~~~---~~~~---------~~g---~~~~~~~~~~h~~ 153 (489)
++....++++|..|++|+.+||.|-.|..|++|.+...+ ..+. .... ... .......+.+|.+
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G 452 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG 452 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence 477788899999999999999999999999999988421 1000 0000 000 0001122567888
Q ss_pred CCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC
Q 037120 154 LPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH 233 (489)
Q Consensus 154 ~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d 233 (489)
+ |..+.|+|+.. +|+++++| ++||+|.+.. ......+.||..+|+++.|+|.|- +|+|+|.|
T Consensus 453 P---Vyg~sFsPd~r-fLlScSED-~svRLWsl~t------------~s~~V~y~GH~~PVwdV~F~P~Gy-YFatas~D 514 (707)
T KOG0263|consen 453 P---VYGCSFSPDRR-FLLSCSED-SSVRLWSLDT------------WSCLVIYKGHLAPVWDVQFAPRGY-YFATASHD 514 (707)
T ss_pred c---eeeeeeccccc-ceeeccCC-cceeeeeccc------------ceeEEEecCCCcceeeEEecCCce-EEEecCCC
Confidence 8 67799999985 88888888 9999999932 223333489999999999999998 99999999
Q ss_pred CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCC
Q 037120 234 GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASM 313 (489)
Q Consensus 234 g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 313 (489)
++.++|...... .++.+.+|.+.|.|+.|+|+..|+++||.|.+||+||+.+|..++.|.+|... |++|+|+|+
T Consensus 515 ~tArLWs~d~~~--PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~----V~al~~Sp~ 588 (707)
T KOG0263|consen 515 QTARLWSTDHNK--PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGP----VTALAFSPC 588 (707)
T ss_pred ceeeeeecccCC--chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCc----eEEEEEcCC
Confidence 999999988755 67888999999999999999999999999999999999999999999999876 888876653
Q ss_pred CcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeec
Q 037120 314 LEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLS 393 (489)
Q Consensus 314 ~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (489)
T Consensus 589 -------------------------------------------------------------------------------- 588 (707)
T KOG0263|consen 589 -------------------------------------------------------------------------------- 588 (707)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeE
Q 037120 394 TNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLL 473 (489)
Q Consensus 394 ~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~ 473 (489)
|.|+++|++|+.|++||+.++ +.+..+. +|++.|.++.|+.+|..||+||.|.+|+
T Consensus 589 --Gr~LaSg~ed~~I~iWDl~~~----------~~v~~l~------------~Ht~ti~SlsFS~dg~vLasgg~DnsV~ 644 (707)
T KOG0263|consen 589 --GRYLASGDEDGLIKIWDLANG----------SLVKQLK------------GHTGTIYSLSFSRDGNVLASGGADNSVR 644 (707)
T ss_pred --CceEeecccCCcEEEEEcCCC----------cchhhhh------------cccCceeEEEEecCCCEEEecCCCCeEE
Confidence 567888999999999999999 8888877 9999999999999999999999999999
Q ss_pred EEeccc
Q 037120 474 VVSQKQ 479 (489)
Q Consensus 474 v~~~~~ 479 (489)
||...+
T Consensus 645 lWD~~~ 650 (707)
T KOG0263|consen 645 LWDLTK 650 (707)
T ss_pred EEEchh
Confidence 997654
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-36 Score=263.86 Aligned_cols=281 Identities=17% Similarity=0.271 Sum_probs=222.8
Q ss_pred cCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 94 FGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
..+.+|..+.|.|+|+.|++|+..|.+.+|+... +..+.-...|.+. |+++.|++++. .+++
T Consensus 94 Kvkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~--------------fnFEtilQaHDs~---Vr~m~ws~~g~-wmiS 155 (464)
T KOG0284|consen 94 KVKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS--------------FNFETILQAHDSP---VRTMKWSHNGT-WMIS 155 (464)
T ss_pred ccccceeeEEEcCCCceeEeecccccEEEecCce--------------eeHHHHhhhhccc---ceeEEEccCCC-EEEE
Confidence 3445699999999999999999999999999865 2223333557666 99999999986 7888
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST 253 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 253 (489)
|..+ |.|++|+.+.. .++... ..|...|++++|+|.+. .|++|+.||+|+|||.+..+.. ..+.
T Consensus 156 gD~g-G~iKyWqpnmn------nVk~~~------ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee--~vL~ 219 (464)
T KOG0284|consen 156 GDKG-GMIKYWQPNMN------NVKIIQ------AHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEE--RVLR 219 (464)
T ss_pred cCCC-ceEEecccchh------hhHHhh------HhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchh--heec
Confidence 8887 99999998432 111122 33558999999999887 9999999999999999987633 3457
Q ss_pred CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeE
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHS 333 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~ 333 (489)
+|.-.|.|++|+|...++++||.|..|++||.++++++.++..|+.. |.++.|++++.++.+..
T Consensus 220 GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKnt----Vl~~~f~~n~N~Llt~s------------ 283 (464)
T KOG0284|consen 220 GHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNT----VLAVKFNPNGNWLLTGS------------ 283 (464)
T ss_pred cCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccce----EEEEEEcCCCCeeEEcc------------
Confidence 99999999999999999999999999999999999999999999988 88888888776665432
Q ss_pred EEeCCCCCeEEEEEecCCceEEEEee--------ccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCC
Q 037120 334 IDLDPSCSYQLAFHLDDGWSGVLDVY--------NSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSD 405 (489)
Q Consensus 334 ~~~~p~~~~~~~~~~~~~w~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d 405 (489)
.|.. .+++++. .+|. ..+..+.|+|-...++++|+.|
T Consensus 284 --------------kD~~-~kv~DiR~mkEl~~~r~Hk--------------------kdv~~~~WhP~~~~lftsgg~D 328 (464)
T KOG0284|consen 284 --------------KDQS-CKVFDIRTMKELFTYRGHK--------------------KDVTSLTWHPLNESLFTSGGSD 328 (464)
T ss_pred --------------CCce-EEEEehhHhHHHHHhhcch--------------------hhheeeccccccccceeeccCC
Confidence 2211 0122221 2222 2234567888889999999999
Q ss_pred CcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccc
Q 037120 406 HGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 406 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
|.|..|.+... +.+..++ ..|...|.+++|||-|.+||+|+.|.++++|.+-+.
T Consensus 329 gsvvh~~v~~~----------~p~~~i~-----------~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~rp 382 (464)
T KOG0284|consen 329 GSVVHWVVGLE----------EPLGEIP-----------PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRNRP 382 (464)
T ss_pred CceEEEecccc----------ccccCCC-----------cccccceeeeeccccceeEeecCCCcceeeeccCCC
Confidence 99999999855 4454444 279999999999999999999999999999987654
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=249.26 Aligned_cols=298 Identities=14% Similarity=0.240 Sum_probs=224.7
Q ss_pred ccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 93 SFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
..|..-|+|+++.|...+|++|+.|++|+|||+.++.... .+.||... |..|++++-.+ .++
T Consensus 148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl--------------tltGhi~~---vr~vavS~rHp-YlF 209 (460)
T KOG0285|consen 148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL--------------TLTGHIET---VRGVAVSKRHP-YLF 209 (460)
T ss_pred hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE--------------eecchhhe---eeeeeecccCc-eEE
Confidence 4444559999999999999999999999999999955544 23566666 77799999887 566
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeec
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELS 252 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 252 (489)
+++.| +.|+-||+... ++ ++.+ .||-..|.+++.+|... .|+||+.|.+++|||+|+.. .+..+
T Consensus 210 s~ged-k~VKCwDLe~n-----kv---IR~Y----hGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~--~V~~l 273 (460)
T KOG0285|consen 210 SAGED-KQVKCWDLEYN-----KV---IRHY----HGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRA--SVHVL 273 (460)
T ss_pred EecCC-CeeEEEechhh-----hh---HHHh----ccccceeEEEeccccce-eEEecCCcceEEEeeecccc--eEEEe
Confidence 67767 99999999332 22 3344 89999999999999999 99999999999999999965 56678
Q ss_pred cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeecccee
Q 037120 253 TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIH 332 (489)
Q Consensus 253 ~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~ 332 (489)
.+|..+|.++.+.|.+..+++|+.|++|++||++.|+.+.++..|... |++++.+|....+++..... |.
T Consensus 274 ~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkks----vral~lhP~e~~fASas~dn------ik 343 (460)
T KOG0285|consen 274 SGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKS----VRALCLHPKENLFASASPDN------IK 343 (460)
T ss_pred cCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccce----eeEEecCCchhhhhccCCcc------ce
Confidence 899999999999999999999999999999999999999999999988 99999999988887632111 11
Q ss_pred EEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEe
Q 037120 333 SIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLD 412 (489)
Q Consensus 333 ~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd 412 (489)
...+ |.+.++.- ..+|...+.+. ....+.++++|+++|.|.+||
T Consensus 344 ~w~~-p~g~f~~n-------------lsgh~~iintl----------------------~~nsD~v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 344 QWKL-PEGEFLQN-------------LSGHNAIINTL----------------------SVNSDGVLVSGGDNGSIMFWD 387 (460)
T ss_pred eccC-Cccchhhc-------------cccccceeeee----------------------eeccCceEEEcCCceEEEEEe
Confidence 1111 33333221 11111111110 001155788899999999999
Q ss_pred ccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccccccc
Q 037120 413 FFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQCTSD 484 (489)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~~~~ 484 (489)
..++ ...+.... ...+.-+.-+..|++.+|...+..|++|..|.+|.+|-+......+
T Consensus 388 wksg----------~nyQ~~~t----~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe~aT~E 445 (460)
T KOG0285|consen 388 WKSG----------HNYQRGQT----IVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDEHATEE 445 (460)
T ss_pred cCcC----------cccccccc----cccCCccccccceeEEeecccCceEEeccCCcceEEEecccccCcc
Confidence 9988 33332210 0000111345679999999999999999999999999887665544
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=238.97 Aligned_cols=252 Identities=16% Similarity=0.213 Sum_probs=196.1
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
|..|...|..++.++||++.++++.|+++++||+.+++ +...+.+|... |.+++|++++. .+
T Consensus 59 ~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~--------------~t~~f~GH~~d---Vlsva~s~dn~-qi 120 (315)
T KOG0279|consen 59 LTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGE--------------STRRFVGHTKD---VLSVAFSTDNR-QI 120 (315)
T ss_pred eeccceEecceEEccCCceEEeccccceEEEEEecCCc--------------EEEEEEecCCc---eEEEEecCCCc-ee
Confidence 66677789999999999999999999999999999843 33345778877 99999999985 89
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecC--CCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAV--NTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
++|+.| ++|++|++- ....+.... ..|++.|+++.|+|. .+ .|++++.|++|++||+++-+ ..
T Consensus 121 vSGSrD-kTiklwnt~-----g~ck~t~~~------~~~~~WVscvrfsP~~~~p-~Ivs~s~DktvKvWnl~~~~--l~ 185 (315)
T KOG0279|consen 121 VSGSRD-KTIKLWNTL-----GVCKYTIHE------DSHREWVSCVRFSPNESNP-IIVSASWDKTVKVWNLRNCQ--LR 185 (315)
T ss_pred ecCCCc-ceeeeeeec-----ccEEEEEec------CCCcCcEEEEEEcCCCCCc-EEEEccCCceEEEEccCCcc--hh
Confidence 999999 999999992 112222111 345889999999999 55 99999999999999999876 55
Q ss_pred eeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeecc
Q 037120 250 ELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQ 329 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~ 329 (489)
..+.+|++.++.++++|||.++++|+.||.+.+||++.++.++.+.. ... |.+++|+|.
T Consensus 186 ~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a-~~~----v~sl~fspn---------------- 244 (315)
T KOG0279|consen 186 TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA-FDI----VNSLCFSPN---------------- 244 (315)
T ss_pred hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC-CCe----EeeEEecCC----------------
Confidence 66779999999999999999999999999999999999998777764 333 566655543
Q ss_pred ceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEE
Q 037120 330 EIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIH 409 (489)
Q Consensus 330 ~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~ 409 (489)
. |.+....+..|+
T Consensus 245 ----------r---------------------------------------------------------ywL~~at~~sIk 257 (315)
T KOG0279|consen 245 ----------R---------------------------------------------------------YWLCAATATSIK 257 (315)
T ss_pred ----------c---------------------------------------------------------eeEeeccCCceE
Confidence 1 122222445699
Q ss_pred EEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 410 LLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 410 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
|||+.++ ..+..+......+ ....-....+++||+++|..+.+|-.|+.|.||-.
T Consensus 258 Iwdl~~~----------~~v~~l~~d~~g~---s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv 312 (315)
T KOG0279|consen 258 IWDLESK----------AVVEELKLDGIGP---SSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQV 312 (315)
T ss_pred EEeccch----------hhhhhcccccccc---ccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence 9999988 6666655221111 00012334689999999999999999999999864
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=262.77 Aligned_cols=237 Identities=16% Similarity=0.211 Sum_probs=195.9
Q ss_pred ccccCCCceeEEEECCC--CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCC
Q 037120 91 RRSFGKPGISALDFDCK--GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQ 168 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~--g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~ 168 (489)
.|..|...|.++.|+|. +..||+|+.||++++|++++..... .+.+|... |..++|+|+|+
T Consensus 212 ~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~--------------~l~gH~~R---Vs~VafHPsG~ 274 (459)
T KOG0272|consen 212 TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQ--------------DLEGHLAR---VSRVAFHPSGK 274 (459)
T ss_pred EEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchh--------------hhhcchhh---heeeeecCCCc
Confidence 36677888999999998 6789999999999999999843332 34566666 88899999996
Q ss_pred CEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCc
Q 037120 169 DEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPS 248 (489)
Q Consensus 169 ~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 248 (489)
+|.+++.| .+-++||+++... . ....||...|.+|+|++||. +++||+.|..-+|||+|++. +
T Consensus 275 -~L~TasfD-~tWRlWD~~tk~E----l--------L~QEGHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr--~ 337 (459)
T KOG0272|consen 275 -FLGTASFD-STWRLWDLETKSE----L--------LLQEGHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGR--C 337 (459)
T ss_pred -eeeecccc-cchhhcccccchh----h--------HhhcccccccceeEecCCCc-eeeccCccchhheeecccCc--E
Confidence 88899998 9999999954321 1 11288999999999999999 99999999999999999998 8
Q ss_pred eeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCC-Ccceeeccccceee
Q 037120 249 LELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASM-LEKIGTLKAQSKIV 327 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~i~~~~~~~~~~ 327 (489)
+..+.+|..+|.+++|+|+|-.+++||.|++++|||+|..+.++++.+|... |+.|+|+|+ |.++
T Consensus 338 im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nl----VS~Vk~~p~~g~fL---------- 403 (459)
T KOG0272|consen 338 IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNL----VSQVKYSPQEGYFL---------- 403 (459)
T ss_pred EEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccch----hhheEecccCCeEE----------
Confidence 8889999999999999999999999999999999999999999999999988 888888873 3333
Q ss_pred ccceeEEEeCCCCCeEEEEEecCC---ce----EEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEE
Q 037120 328 SQEIHSIDLDPSCSYQLAFHLDDG---WS----GVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAV 400 (489)
Q Consensus 328 ~~~i~~~~~~p~~~~~~~~~~~~~---w~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 400 (489)
++++.|+. |+ ..++...||..++.+. ..+.+ +.+++
T Consensus 404 ----------------~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~--Dis~d-------------------~~~i~ 446 (459)
T KOG0272|consen 404 ----------------VTASYDNTVKIWSTRTWSPLKSLAGHEGKVISL--DISPD-------------------SQAIA 446 (459)
T ss_pred ----------------EEcccCcceeeecCCCcccchhhcCCccceEEE--EeccC-------------------CceEE
Confidence 33333433 32 2566677888777665 44455 88999
Q ss_pred eecCCCcEEEEe
Q 037120 401 GSSSDHGIHLLD 412 (489)
Q Consensus 401 sgs~d~~i~vwd 412 (489)
+++.|++|++|.
T Consensus 447 t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 447 TSSFDRTIKLWR 458 (459)
T ss_pred EeccCceeeecc
Confidence 999999999995
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=274.39 Aligned_cols=285 Identities=20% Similarity=0.309 Sum_probs=218.9
Q ss_pred CCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 96 KPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
...|.|+.|+++|++|++++.|+.+++|+...... . ....+.+|... |.+++|+|++. .+++++
T Consensus 159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~-----------~~~~l~~h~~~---v~~~~fs~d~~-~l~s~s 222 (456)
T KOG0266|consen 159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-N-----------LLRELSGHTRG---VSDVAFSPDGS-YLLSGS 222 (456)
T ss_pred cCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-h-----------hhccccccccc---eeeeEECCCCc-EEEEec
Confidence 56799999999999999999999999999966331 0 11111445555 89999999987 888888
Q ss_pred cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCC
Q 037120 176 TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGS 255 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h 255 (489)
.| ++|+|||+... .....++.+|...|++++|+|+++ ++++|+.|++|+|||+++++ +.+.+.+|
T Consensus 223 ~D-~tiriwd~~~~-----------~~~~~~l~gH~~~v~~~~f~p~g~-~i~Sgs~D~tvriWd~~~~~--~~~~l~~h 287 (456)
T KOG0266|consen 223 DD-KTLRIWDLKDD-----------GRNLKTLKGHSTYVTSVAFSPDGN-LLVSGSDDGTVRIWDVRTGE--CVRKLKGH 287 (456)
T ss_pred CC-ceEEEeeccCC-----------CeEEEEecCCCCceEEEEecCCCC-EEEEecCCCcEEEEeccCCe--EEEeeecc
Confidence 88 99999999211 112333489999999999999996 99999999999999999977 88889999
Q ss_pred CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCc--ccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeE
Q 037120 256 HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGR--TSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHS 333 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~--~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~ 333 (489)
.+.|++++|++++.++++++.|+.|++||+.++. ++..+..+... +++++++|+|++.
T Consensus 288 s~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~fsp~~~------------------ 347 (456)
T KOG0266|consen 288 SDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS--APVTSVQFSPNGK------------------ 347 (456)
T ss_pred CCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC--CceeEEEECCCCc------------------
Confidence 9999999999999999999999999999999988 45666654433 1355555555554
Q ss_pred EEeCCCCCeEEEEEecCC---ce----EEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCC
Q 037120 334 IDLDPSCSYQLAFHLDDG---WS----GVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDH 406 (489)
Q Consensus 334 ~~~~p~~~~~~~~~~~~~---w~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~ 406 (489)
+++....++. |. .+...+.+|.....|+..... ..++.++++|+.|+
T Consensus 348 --------~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~i~sg~~d~ 401 (456)
T KOG0266|consen 348 --------YLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTL------------------STGGKLIYSGSEDG 401 (456)
T ss_pred --------EEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccc------------------cCCCCeEEEEeCCc
Confidence 4444444433 21 122333333333222211111 22488999999999
Q ss_pred cEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccC-CCceEEEEeeCCCCeEEecc--CcceeEEEeccc
Q 037120 407 GIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPL-SEGVTACVTHPLNNTIVAGT--KNSSLLVVSQKQ 479 (489)
Q Consensus 407 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~va~~p~~~~i~sgs--~dg~i~v~~~~~ 479 (489)
.|++||+.++ ..+..++ +| ...|..+++||..+++++++ .|+.+.+|..+.
T Consensus 402 ~v~~~~~~s~----------~~~~~l~------------~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~~ 455 (456)
T KOG0266|consen 402 SVYVWDSSSG----------GILQRLE------------GHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYDF 455 (456)
T ss_pred eEEEEeCCcc----------chhhhhc------------CCCCCceeccccCCCcCeeeecCcCCCceEEEecCCC
Confidence 9999999998 8888888 99 89999999999999999999 788899997653
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=261.32 Aligned_cols=290 Identities=14% Similarity=0.144 Sum_probs=227.6
Q ss_pred ccccCCCceeEEEECC-CCcEEEEEecCCeEEEEeCCC-cccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCC
Q 037120 91 RRSFGKPGISALDFDC-KGIYLVSATRSGCLTVHDFES-LYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQ 168 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~-~g~~la~g~~dg~i~vwd~~~-~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~ 168 (489)
.+..|..+|+++.|.| .+.+|++|+.|+.|+||++-. ..++. + +.+|... |.+++|++++.
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr--------t------f~gH~k~---Vrd~~~s~~g~ 271 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR--------T------FKGHRKP---VRDASFNNCGT 271 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh--------h------hhcchhh---hhhhhccccCC
Confidence 4778899999999999 899999999999999999876 44444 2 3566666 88899999997
Q ss_pred CEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCc
Q 037120 169 DEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPS 248 (489)
Q Consensus 169 ~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 248 (489)
.+++++.| +.|++||+.++ .++.... -...++++.|+|++++.|++|+.|+.|+.||+|+++ +
T Consensus 272 -~fLS~sfD-~~lKlwDtETG-----~~~~~f~--------~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~k--v 334 (503)
T KOG0282|consen 272 -SFLSASFD-RFLKLWDTETG-----QVLSRFH--------LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGK--V 334 (503)
T ss_pred -eeeeeecc-eeeeeeccccc-----eEEEEEe--------cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchH--H
Confidence 66667777 99999999443 3333222 123788999999998799999999999999999998 7
Q ss_pred eeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceee-cCCccCCCCeeEEEeCCCCcceeeccccceee
Q 037120 249 LELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH-NHKEVCHLPLTSLKLASMLEKIGTLKAQSKIV 327 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~-~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~ 327 (489)
++.+..|-+.|..+.|-++|+.+++++.|++++||+.+.+-.++.+. .+... ..++..+|.+..++.-
T Consensus 335 vqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hs----mP~~~~~P~~~~~~aQ------- 403 (503)
T KOG0282|consen 335 VQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHT----MPCLTLHPNGKWFAAQ------- 403 (503)
T ss_pred HHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhcc----CcceecCCCCCeehhh-------
Confidence 88888999999999999999999999999999999999876644332 12222 6778888887766421
Q ss_pred ccceeEEEeCCCCCeEEEEEecCCce-EEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCC
Q 037120 328 SQEIHSIDLDPSCSYQLAFHLDDGWS-GVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDH 406 (489)
Q Consensus 328 ~~~i~~~~~~p~~~~~~~~~~~~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~ 406 (489)
..+.+++.+....... ...+.+.||...-+.....|+++ +.+|++|+.||
T Consensus 404 ----------s~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpD-------------------G~~l~SGdsdG 454 (503)
T KOG0282|consen 404 ----------SMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPD-------------------GRTLCSGDSDG 454 (503)
T ss_pred ----------ccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCC-------------------CCeEEeecCCc
Confidence 1123344443322221 23445667777666655566666 88999999999
Q ss_pred cEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCC-CeEEeccCcceeEEEe
Q 037120 407 GIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLN-NTIVAGTKNSSLLVVS 476 (489)
Q Consensus 407 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~-~~i~sgs~dg~i~v~~ 476 (489)
.+++||..+. +++..++ .|.+++..+.|||.. ..+||||+||.|.+|.
T Consensus 455 ~v~~wdwkt~----------kl~~~lk------------ah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 455 KVNFWDWKTT----------KLVSKLK------------AHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cEEEeechhh----------hhhhccc------------cCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999999999 8888888 999999999999988 4899999999999983
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-34 Score=253.54 Aligned_cols=288 Identities=13% Similarity=0.180 Sum_probs=219.6
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|...|.-+.||++|+|||+++.|.+..+|++...... .-...+.+|... |..+.|+||..+++
T Consensus 220 l~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~-----------kl~~tlvgh~~~---V~yi~wSPDdryLl 285 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHF-----------KLKKTLVGHSQP---VSYIMWSPDDRYLL 285 (519)
T ss_pred HhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcce-----------eeeeeeecccCc---eEEEEECCCCCeEE
Confidence 5667788999999999999999999999999988653221 111224566666 88899999998777
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
+++. +..+.+||+.++... .... .+|...+.+++|.|||. .|++|+.|+++..||+.......++-
T Consensus 286 aCg~--~e~~~lwDv~tgd~~-----~~y~------~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn~~~~W~g 351 (519)
T KOG0293|consen 286 ACGF--DEVLSLWDVDTGDLR-----HLYP------SGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGNILGNWEG 351 (519)
T ss_pred ecCc--hHheeeccCCcchhh-----hhcc------cCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcchhhcccc
Confidence 7777 358999999544211 1111 34567899999999999 89999999999999998654333332
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
.. ...|.+++..+||+++++.+.|..|++|+..+......+..+ +||+++.++.+++++.
T Consensus 352 vr--~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~-----~~its~~iS~d~k~~L------------- 411 (519)
T KOG0293|consen 352 VR--DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEE-----QPITSFSISKDGKLAL------------- 411 (519)
T ss_pred cc--cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccccc-----CceeEEEEcCCCcEEE-------------
Confidence 22 345899999999999999999999999998875443333322 3477777776665543
Q ss_pred eEEEeCCCCCeEEEEEecCC---ce----EEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecC
Q 037120 332 HSIDLDPSCSYQLAFHLDDG---WS----GVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSS 404 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~---w~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~ 404 (489)
+.-.+.. |. .++..|.||...-+-+..+|...+ ..++++||+
T Consensus 412 -------------vnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~------------------~~fiaSGSE 460 (519)
T KOG0293|consen 412 -------------VNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGN------------------DKFIASGSE 460 (519)
T ss_pred -------------EEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCC------------------cceEEecCC
Confidence 2222222 32 344566777777666666776663 689999999
Q ss_pred CCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCC-eEEeccCcceeEEEecccc
Q 037120 405 DHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN-TIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 405 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~-~i~sgs~dg~i~v~~~~~~ 480 (489)
|+.|+||+..++ +.+.++. ||...|++|+|+|..+ ++||+|.||+|++|..++.
T Consensus 461 D~kvyIWhr~sg----------kll~~Ls------------GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 461 DSKVYIWHRISG----------KLLAVLS------------GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CceEEEEEccCC----------ceeEeec------------CCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 999999999999 8999999 9999999999999885 9999999999999998754
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-32 Score=227.48 Aligned_cols=292 Identities=14% Similarity=0.147 Sum_probs=211.6
Q ss_pred cccCCCceeEEEECCC-CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDCK-GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~-g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..+...|..++|+|- |..||+|+.|..|+||+........ ...... -+|+.. |.+++|+|.++ +
T Consensus 10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~---------ck~vld-~~hkrs---VRsvAwsp~g~-~ 75 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWT---------CKTVLD-DGHKRS---VRSVAWSPHGR-Y 75 (312)
T ss_pred ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEE---------EEEecc-ccchhe---eeeeeecCCCc-E
Confidence 4445567999999999 9999999999999999998411111 111110 246666 99999999997 9
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCc-Cce
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVL-PSL 249 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~ 249 (489)
|++++.| .++.||.-... ...++.++.||...|.+++|+++|. +|++|+.|..|-||.+..+.. .|.
T Consensus 76 La~aSFD-~t~~Iw~k~~~----------efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~ 143 (312)
T KOG0645|consen 76 LASASFD-ATVVIWKKEDG----------EFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECI 143 (312)
T ss_pred EEEeecc-ceEEEeecCCC----------ceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEE
Confidence 9999999 99999987322 1223556699999999999999999 999999999999999885433 377
Q ss_pred eeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC---CcccceeecCCccCCCCeeEEEeCCCCcceeecccccee
Q 037120 250 ELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRG---GRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKI 326 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~---~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~ 326 (489)
..+..|...|.-+.|+|...+|++++.|++|++|+-.. ..++.++.+|... |.+++|++.|..+++
T Consensus 144 aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~T----VW~~~F~~~G~rl~s------- 212 (312)
T KOG0645|consen 144 AVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENT----VWSLAFDNIGSRLVS------- 212 (312)
T ss_pred eeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccce----EEEEEecCCCceEEE-------
Confidence 78889999999999999999999999999999998763 3457888888766 777777666644432
Q ss_pred eccceeEEEeCCCCCeEEEEEecCCceEEEEee----ccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEee
Q 037120 327 VSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVY----NSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGS 402 (489)
Q Consensus 327 ~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 402 (489)
+ .++++..++..+ ..|...+|.+ .|. ...++++
T Consensus 213 -------------------~-sdD~tv~Iw~~~~~~~~~~sr~~Y~v--------------------~W~---~~~IaS~ 249 (312)
T KOG0645|consen 213 -------------------C-SDDGTVSIWRLYTDLSGMHSRALYDV--------------------PWD---NGVIASG 249 (312)
T ss_pred -------------------e-cCCcceEeeeeccCcchhcccceEee--------------------eec---ccceEec
Confidence 2 233333333322 1111222222 222 3468889
Q ss_pred cCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCC-CCeEEeccCcceeEEEecc
Q 037120 403 SSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPL-NNTIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 403 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~-~~~i~sgs~dg~i~v~~~~ 478 (489)
+.|+.|+|+--...+..+ .++.....-. .|...|++|+|.|. .+.|++||.||.+++|..+
T Consensus 250 ggD~~i~lf~~s~~~d~p---~~~l~~~~~~------------aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 250 GGDDAIRLFKESDSPDEP---SWNLLAKKEG------------AHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cCCCEEEEEEecCCCCCc---hHHHHHhhhc------------ccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 999999999776441100 0001111111 69999999999995 6799999999999999865
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-34 Score=245.03 Aligned_cols=380 Identities=17% Similarity=0.195 Sum_probs=253.3
Q ss_pred ccccCCCCCCCCcCcCccCcccceeeeecCcccccccchHHHHHHhhhh---hcccccccccccCccccccccccccccc
Q 037120 4 YLVSRESVPENPKRCNSSNRWKRSVVELNGRFESKYRHDLSALLMQSYS---QIGAFPHLYHVDRVLCPTHEGIVNSQRS 80 (489)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 80 (489)
|+.|.+..+...|.+ |-..+++.+.|....-...++++++-|++. ..|..|---.++-++-..-+...-.++
T Consensus 125 YFDp~EaY~dssKEk----rRa~IAQ~ls~EV~VVppSRLlaLlGQaLKWQqHQGLLPPGt~iDLFRGkAA~K~~~Ee~- 199 (508)
T KOG0275|consen 125 YFDPREAYGDSSKEK----RRAVIAQALSGEVHVVPPSRLLALLGQALKWQQHQGLLPPGTTIDLFRGKAAMKDQEEER- 199 (508)
T ss_pred ccChhhhcCcchHHH----HHHHHHHHhcCceEEcChHHHHHHHHHHhhhHhhcCCCCCCceeeeccchhhhhhhHhhh-
Confidence 445555554333222 223455667777777777788888888764 123332222222111111010000000
Q ss_pred cceeeeccccccccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeE
Q 037120 81 RAGDVAMIDHRRSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDA 160 (489)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~ 160 (489)
-...+..+.-.....-+-|..|||||+||++|+.||.|.|||+.+++..... ....+-.+..+... |.|
T Consensus 200 --~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDL------kYQAqd~fMMmd~a---Vlc 268 (508)
T KOG0275|consen 200 --YPTQLARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDL------KYQAQDNFMMMDDA---VLC 268 (508)
T ss_pred --chHHhhhheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhh------hhhhhcceeecccc---eEE
Confidence 0000111111223344889999999999999999999999999986554432 23444445556666 999
Q ss_pred EEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 037120 161 VRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWD 240 (489)
Q Consensus 161 v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd 240 (489)
+.|+.|.+ ++++|+.| |.|+||.+..+ ..+.... ..|+..|+++.|+.|+. .+++++.|.++++--
T Consensus 269 i~FSRDsE-MlAsGsqD-GkIKvWri~tG-----~ClRrFd------rAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHG 334 (508)
T KOG0275|consen 269 ISFSRDSE-MLASGSQD-GKIKVWRIETG-----QCLRRFD------RAHTKGVTCLSFSRDNS-QILSASFDQTVRIHG 334 (508)
T ss_pred EeecccHH-HhhccCcC-CcEEEEEEecc-----hHHHHhh------hhhccCeeEEEEccCcc-hhhcccccceEEEec
Confidence 99999975 99999999 99999999443 3333333 46999999999999998 999999999999999
Q ss_pred CCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeec
Q 037120 241 RRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTL 320 (489)
Q Consensus 241 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~ 320 (489)
+.+++ +++.+.+|++.|+...|.++|.+++++++||+|++|+..+.+|+.+|+..... .+|.++-.-|...
T Consensus 335 lKSGK--~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d--~~vnsv~~~PKnp----- 405 (508)
T KOG0275|consen 335 LKSGK--CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTD--YPVNSVILLPKNP----- 405 (508)
T ss_pred cccch--hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCc--ccceeEEEcCCCC-----
Confidence 99998 89999999999999999999999999999999999999999999888754322 3466665554331
Q ss_pred cccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEE
Q 037120 321 KAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAV 400 (489)
Q Consensus 321 ~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 400 (489)
..+++|...++ .++-...|.+.+. |+.......+ -..+.++..+.++.
T Consensus 406 --------------------eh~iVCNrsnt--v~imn~qGQvVrs------fsSGkREgGd----Fi~~~lSpkGewiY 453 (508)
T KOG0275|consen 406 --------------------EHFIVCNRSNT--VYIMNMQGQVVRS------FSSGKREGGD----FINAILSPKGEWIY 453 (508)
T ss_pred --------------------ceEEEEcCCCe--EEEEeccceEEee------eccCCccCCc----eEEEEecCCCcEEE
Confidence 11222221111 0111112222221 1111100000 00111222277888
Q ss_pred eecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 401 GSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 401 sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
..++|+.++.+.+.++ .....+. -|+..|..++-||..+.||+-++||.+.+|-
T Consensus 454 cigED~vlYCF~~~sG----------~LE~tl~------------VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 454 CIGEDGVLYCFSVLSG----------KLERTLP------------VHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EEccCcEEEEEEeecC----------ceeeeee------------cccccccccccCcccchhhhhcccchhhhcC
Confidence 8889999999999999 6666666 7889999999999999999999999999994
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=226.99 Aligned_cols=254 Identities=17% Similarity=0.205 Sum_probs=205.3
Q ss_pred ccccCCCceeEEEECCC-CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCC
Q 037120 91 RRSFGKPGISALDFDCK-GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQD 169 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~-g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~ 169 (489)
++..|...|..++..+. -+.|.+++.|.++.+|++...... .-.+...+.||... |..+..+++++
T Consensus 10 tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~---------~G~~~r~~~GHsH~---v~dv~~s~dg~- 76 (315)
T KOG0279|consen 10 TLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK---------YGVPVRRLTGHSHF---VSDVVLSSDGN- 76 (315)
T ss_pred eecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc---------cCceeeeeeccceE---ecceEEccCCc-
Confidence 46667777999999987 578899999999999999874221 22344556778777 88899999986
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
++++++.| +++++||+..+ + +.+. |.+|...|.+++|++|+. .+++|+.|.+|++|++.... ..
T Consensus 77 ~alS~swD-~~lrlWDl~~g--~------~t~~----f~GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~c--k~ 140 (315)
T KOG0279|consen 77 FALSASWD-GTLRLWDLATG--E------STRR----FVGHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGVC--KY 140 (315)
T ss_pred eEEecccc-ceEEEEEecCC--c------EEEE----EEecCCceEEEEecCCCc-eeecCCCcceeeeeeecccE--EE
Confidence 77888888 99999999433 1 1233 489999999999999999 99999999999999998653 22
Q ss_pred eecc-CCCCceeEEEEeec--CCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeecccccee
Q 037120 250 ELST-GSHGTLNSIQLHAE--NQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKI 326 (489)
Q Consensus 250 ~~~~-~h~~~v~~~~~~p~--~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~ 326 (489)
.... .+++.|+|+.|+|+ ..+++++|.|++|++||+++.+....+.+|.+. ++.+.++|||
T Consensus 141 t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~----v~t~~vSpDG------------ 204 (315)
T KOG0279|consen 141 TIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGY----VNTVTVSPDG------------ 204 (315)
T ss_pred EEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccccccc----EEEEEECCCC------------
Confidence 2222 33789999999998 789999999999999999999888888888877 7777666553
Q ss_pred eccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCC
Q 037120 327 VSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDH 406 (489)
Q Consensus 327 ~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~ 406 (489)
.++++|+.||
T Consensus 205 ----------------------------------------------------------------------slcasGgkdg 214 (315)
T KOG0279|consen 205 ----------------------------------------------------------------------SLCASGGKDG 214 (315)
T ss_pred ----------------------------------------------------------------------CEEecCCCCc
Confidence 3566788999
Q ss_pred cEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccccccc
Q 037120 407 GIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQCTS 483 (489)
Q Consensus 407 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~~~ 483 (489)
.+.+||+..+ +.++.++ |...|.+++|+|+...|+.+...+ |.||..+.+..-
T Consensus 215 ~~~LwdL~~~----------k~lysl~-------------a~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v 267 (315)
T KOG0279|consen 215 EAMLWDLNEG----------KNLYSLE-------------AFDIVNSLCFSPNRYWLCAATATS-IKIWDLESKAVV 267 (315)
T ss_pred eEEEEEccCC----------ceeEecc-------------CCCeEeeEEecCCceeEeeccCCc-eEEEeccchhhh
Confidence 9999999999 7776665 899999999999999888877754 999988776543
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=223.24 Aligned_cols=277 Identities=17% Similarity=0.205 Sum_probs=214.7
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..++..|+++.|+-+|+|.++++.|.+|++|+...+.++. + +.+|-.+ |..++.+.++. .+
T Consensus 13 l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik--------t------YsghG~E---VlD~~~s~Dns-kf 74 (307)
T KOG0316|consen 13 LDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK--------T------YSGHGHE---VLDAALSSDNS-KF 74 (307)
T ss_pred ecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee--------e------ecCCCce---eeecccccccc-cc
Confidence 34566779999999999999999999999999998855554 2 2445445 88899998886 66
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++.| ..|.+||++++ ++ .+.+ .+|.+.|+.++|+.... .+++|+.|.++++||.|+....+++.
T Consensus 75 ~s~GgD-k~v~vwDV~TG-----kv---~Rr~----rgH~aqVNtV~fNeesS-Vv~SgsfD~s~r~wDCRS~s~ePiQi 140 (307)
T KOG0316|consen 75 ASCGGD-KAVQVWDVNTG-----KV---DRRF----RGHLAQVNTVRFNEESS-VVASGSFDSSVRLWDCRSRSFEPIQI 140 (307)
T ss_pred ccCCCC-ceEEEEEcccC-----ee---eeec----ccccceeeEEEecCcce-EEEeccccceeEEEEcccCCCCccch
Confidence 666666 99999999544 33 2233 88999999999998887 99999999999999999987667888
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
+....+.|.++..+ +..+++|+.||++|.||+|.|+.....-+|. |++++|+++++
T Consensus 141 ldea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~p------it~vs~s~d~n---------------- 196 (307)
T KOG0316|consen 141 LDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGHP------ITSVSFSKDGN---------------- 196 (307)
T ss_pred hhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcCCc------ceeEEecCCCC----------------
Confidence 88778899999885 5678888889999999999998655555433 77777766664
Q ss_pred eEEEeCCCCCeEEEEEecCC-------ceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecC
Q 037120 332 HSIDLDPSCSYQLAFHLDDG-------WSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSS 404 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~-------w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~ 404 (489)
..++.+++.. --+++..|.||.+.-+...+++... ...+++||+
T Consensus 197 ----------c~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qs-------------------dthV~sgSE 247 (307)
T KOG0316|consen 197 ----------CSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQS-------------------DTHVFSGSE 247 (307)
T ss_pred ----------EEEEeeccceeeecccchhHHHHHhcccccceeeeeeeeccc-------------------ceeEEeccC
Confidence 3333333333 1256777888888877766666666 789999999
Q ss_pred CCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCc-eEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 405 DHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEG-VTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 405 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
||.+++||+-.. ..+..+. .|... |.++++||...-+++++..+ +.+|-
T Consensus 248 DG~Vy~wdLvd~----------~~~sk~~------------~~~~v~v~dl~~hp~~~~f~~A~~~~-~~~~~ 297 (307)
T KOG0316|consen 248 DGKVYFWDLVDE----------TQISKLS------------VVSTVIVTDLSCHPTMDDFITATGHG-DLFWY 297 (307)
T ss_pred CceEEEEEeccc----------eeeeeec------------cCCceeEEeeecccCccceeEecCCc-eecee
Confidence 999999999988 7777776 56666 89999999998777666544 44443
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-31 Score=222.49 Aligned_cols=269 Identities=18% Similarity=0.263 Sum_probs=206.4
Q ss_pred CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEec
Q 037120 108 GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIG 187 (489)
Q Consensus 108 g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~ 187 (489)
.-+||+++.|.+||+|...++.|.... -|.. ..|..+...|++. .|++++ .-.|++||++
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rTi---------------qh~d--sqVNrLeiTpdk~-~LAaa~--~qhvRlyD~~ 69 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRTI---------------QHPD--SQVNRLEITPDKK-DLAAAG--NQHVRLYDLN 69 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEEE---------------ecCc--cceeeEEEcCCcc-hhhhcc--CCeeEEEEcc
Confidence 358999999999999999998877621 1211 1288899999986 677777 4699999997
Q ss_pred cCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeec
Q 037120 188 YISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAE 267 (489)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~ 267 (489)
.....| ..++.+|++.|+++.|.-+|. .++|||+||+++|||+|... +- ....|..+|+++..+|+
T Consensus 70 S~np~P----------v~t~e~h~kNVtaVgF~~dgr-WMyTgseDgt~kIWdlR~~~--~q-R~~~~~spVn~vvlhpn 135 (311)
T KOG0315|consen 70 SNNPNP----------VATFEGHTKNVTAVGFQCDGR-WMYTGSEDGTVKIWDLRSLS--CQ-RNYQHNSPVNTVVLHPN 135 (311)
T ss_pred CCCCCc----------eeEEeccCCceEEEEEeecCe-EEEecCCCceEEEEeccCcc--cc-hhccCCCCcceEEecCC
Confidence 665443 233488999999999999999 99999999999999999854 44 34467899999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCcccceeec-CCccCCCCeeEEEeCCCCcceeecc----------------------ccc
Q 037120 268 NQIIFAAGKHGSIYLWDLRGGRTSAPFHN-HKEVCHLPLTSLKLASMLEKIGTLK----------------------AQS 324 (489)
Q Consensus 268 ~~~l~~~~~dg~i~lwd~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~i~~~~----------------------~~~ 324 (489)
...|++|..+|.|++||++...+...+-. ... +|.++...|||++++... ...
T Consensus 136 QteLis~dqsg~irvWDl~~~~c~~~liPe~~~----~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~ 211 (311)
T KOG0315|consen 136 QTELISGDQSGNIRVWDLGENSCTHELIPEDDT----SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKF 211 (311)
T ss_pred cceEEeecCCCcEEEEEccCCccccccCCCCCc----ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhe
Confidence 99999999999999999998777555432 233 499999999999883211 123
Q ss_pred eeeccceeEEEeCCCCCeEEEEEecCC---ce--E---EEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCc
Q 037120 325 KIVSQEIHSIDLDPSCSYQLAFHLDDG---WS--G---VLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNS 396 (489)
Q Consensus 325 ~~~~~~i~~~~~~p~~~~~~~~~~~~~---w~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (489)
..+...+..+.+||+++++++++.|.+ |. . .....+++..-+.. +.|+.+ +
T Consensus 212 ~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWd--c~FS~d-------------------g 270 (311)
T KOG0315|consen 212 QAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWD--CAFSAD-------------------G 270 (311)
T ss_pred ecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEe--eeeccC-------------------c
Confidence 344667889999999999999999887 53 1 11222333211111 133334 8
Q ss_pred EEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEee
Q 037120 397 IYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTH 457 (489)
Q Consensus 397 ~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~ 457 (489)
.|+++|+.|+.+++||+..+ +.+.... ||.....|++.+
T Consensus 271 ~YlvTassd~~~rlW~~~~~----------k~v~qy~------------gh~K~~vc~~ln 309 (311)
T KOG0315|consen 271 EYLVTASSDHTARLWDLSAG----------KEVRQYQ------------GHHKAAVCVALN 309 (311)
T ss_pred cEEEecCCCCceeecccccC----------ceeeecC------------CcccccEEEEee
Confidence 99999999999999999999 7777777 898888888764
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=244.17 Aligned_cols=277 Identities=16% Similarity=0.209 Sum_probs=214.0
Q ss_pred cCCCceeEEEECCCC-cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 94 FGKPGISALDFDCKG-IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g-~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
.+...|+.+.+-|+. ..+|+++..+.|.|||..+....... .|...+...+.+|..++++ ++|++.....++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~----~~~~~Pdl~L~gH~~eg~g---lsWn~~~~g~Ll 194 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA----SGECRPDLRLKGHEKEGYG---LSWNRQQEGTLL 194 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc----cccCCCceEEEeecccccc---cccccccceeEe
Confidence 355568888888875 56677888999999999885544432 1346777788999999888 999999999999
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeec
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELS 252 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 252 (489)
+++.| ++|++||+...... ..++.+...+ .+|...|.+++|++....+|++++.|+.+.|||+|++...+.+..
T Consensus 195 s~~~d-~~i~lwdi~~~~~~-~~~~~p~~~~----~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~ 268 (422)
T KOG0264|consen 195 SGSDD-HTICLWDINAESKE-DKVVDPKTIF----SGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSV 268 (422)
T ss_pred eccCC-CcEEEEeccccccC-CccccceEEe----ecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccc
Confidence 99988 99999999765543 2344444545 899999999999999998999999999999999997433345566
Q ss_pred cCCCCceeEEEEeecCCEEEEE-eCCCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccc
Q 037120 253 TGSHGTLNSIQLHAENQIIFAA-GKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQE 330 (489)
Q Consensus 253 ~~h~~~v~~~~~~p~~~~l~~~-~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~ 330 (489)
.+|.+.|+|++|+|.+.+++++ +.|++|+|||+|+.+. ++++.+|... |..|.|+|..
T Consensus 269 ~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~de----v~~V~WSPh~---------------- 328 (422)
T KOG0264|consen 269 KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDE----VFQVEWSPHN---------------- 328 (422)
T ss_pred cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcc----eEEEEeCCCC----------------
Confidence 7999999999999977766555 5599999999999765 8888888877 7777666532
Q ss_pred eeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 331 IHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 331 i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
..++++++.|+.+.|
T Consensus 329 -----------------------------------------------------------------etvLASSg~D~rl~v 343 (422)
T KOG0264|consen 329 -----------------------------------------------------------------ETVLASSGTDRRLNV 343 (422)
T ss_pred -----------------------------------------------------------------CceeEecccCCcEEE
Confidence 445677789999999
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCc--ccCCCceEEEEeeCCCC-eEEeccCcceeEEEecc
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRF--VPLSEGVTACVTHPLNN-TIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~va~~p~~~-~i~sgs~dg~i~v~~~~ 478 (489)
||+..- ...+..+.....+.+-.| -||...|+.++|+|..+ .|+|.++|+.+.||.--
T Consensus 344 WDls~i----------g~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 344 WDLSRI----------GEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred Eecccc----------ccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 999755 222211111112222223 59999999999999998 78899999999999544
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-32 Score=257.10 Aligned_cols=268 Identities=13% Similarity=0.161 Sum_probs=220.8
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+.+|.+.|.+++...+|.+||+|+.|.++++|.++..... ........+|+.. |.+|+++..+..+|
T Consensus 361 i~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~----------~~~~a~~~gH~~s---vgava~~~~~asff 427 (775)
T KOG0319|consen 361 IPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSK----------SLCVAQANGHTNS---VGAVAGSKLGASFF 427 (775)
T ss_pred EeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcch----------hhhhhhhcccccc---cceeeecccCccEE
Confidence 5667788999997788899999999999999988542221 2222334678888 88899999888899
Q ss_pred EEEecCCCEEEEEEeccCCCCCc-eeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPV-EVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
++++.| +++++|++........ ..+.... +-..|...|++++.+|++. +|+|||.|.+.+||++.... ...
T Consensus 428 vsvS~D-~tlK~W~l~~s~~~~~~~~~~~~~----t~~aHdKdIN~Vaia~ndk-LiAT~SqDktaKiW~le~~~--l~~ 499 (775)
T KOG0319|consen 428 VSVSQD-CTLKLWDLPKSKETAFPIVLTCRY----TERAHDKDINCVAIAPNDK-LIATGSQDKTAKIWDLEQLR--LLG 499 (775)
T ss_pred EEecCC-ceEEEecCCCcccccccceehhhH----HHHhhcccccceEecCCCc-eEEecccccceeeecccCce--EEE
Confidence 999999 9999999965221111 1111111 1266999999999999999 99999999999999999655 677
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccc
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQE 330 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~ 330 (489)
.+.+|...|.|+.|+|..+.+++++.|++|+||.+.++.++++|.+|..+ |-.+.|-
T Consensus 500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~a----Vlra~F~------------------- 556 (775)
T KOG0319|consen 500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSA----VLRASFI------------------- 556 (775)
T ss_pred EeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccce----eEeeeee-------------------
Confidence 88899999999999999999999999999999999999999999999866 4333221
Q ss_pred eeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 331 IHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 331 i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
.. +..+++++.||-|+|
T Consensus 557 --------------------------------------------~~-------------------~~qliS~~adGliKl 573 (775)
T KOG0319|consen 557 --------------------------------------------RN-------------------GKQLISAGADGLIKL 573 (775)
T ss_pred --------------------------------------------eC-------------------CcEEEeccCCCcEEE
Confidence 11 667889999999999
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccccccccccc
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQCTSDSMLE 488 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~~~~~~~~ 488 (489)
|++.+. +++..+. .|.+.|.+++.+|...+|+|||.||.|.+|-+-.+..+..|.+
T Consensus 574 Wnikt~----------eC~~tlD------------~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te~~~~ee~~ 629 (775)
T KOG0319|consen 574 WNIKTN----------ECEMTLD------------AHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTEEEQNEEQE 629 (775)
T ss_pred Eeccch----------hhhhhhh------------hccceeEEEeecCccceeEecCCCeEEEEeecCcHHHHHHHHH
Confidence 999999 9999999 9999999999999999999999999999998777666665544
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=232.67 Aligned_cols=301 Identities=13% Similarity=0.190 Sum_probs=234.3
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..+...|..+-|.|+-.++++++.|++|++||..++++.. .+.+|+.. |..++|+..+. .+
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~--------------~LrGHt~s---v~di~~~a~Gk-~l 165 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER--------------SLRGHTDS---VFDISFDASGK-YL 165 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh--------------hhhccccc---eeEEEEecCcc-EE
Confidence 34466779999999999999999999999999999965543 34778888 88899999985 88
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++.| -.+++||.... ....+ .+.+|...|.+++|-|.|. ++++++.|.+|+.||+.++. |++.
T Consensus 166 ~tcSsD-l~~~LWd~~~~-------~~c~k----s~~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~--cv~t 230 (406)
T KOG0295|consen 166 ATCSSD-LSAKLWDFDTF-------FRCIK----SLIGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGY--CVKT 230 (406)
T ss_pred EecCCc-cchhheeHHHH-------HHHHH----HhcCcccceeeEEEEecCC-eeeecccccceeEEecccce--eEEe
Confidence 888877 77999999321 22222 3488999999999999998 99999999999999999988 8999
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
+.+|...|..++.+.||.++++++.|.+|++|-+.++++...+..|+.+ |.+++|.|...+-.......
T Consensus 231 ~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~----vEci~wap~~~~~~i~~at~------- 299 (406)
T KOG0295|consen 231 FPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHP----VECIAWAPESSYPSISEATG------- 299 (406)
T ss_pred ccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccc----eEEEEecccccCcchhhccC-------
Confidence 9999999999999999999999999999999999999999999999977 99999999875321111110
Q ss_pred eEEEeCC-CCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 332 HSIDLDP-SCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 332 ~~~~~~p-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
+. .+.++...+.|.. .+++++.+|...-...-...|. +.++++| ||+|++++.+|++++|
T Consensus 300 -----~~~~~~~l~s~SrDkt-Ik~wdv~tg~cL~tL~ghdnwV------------r~~af~p-~Gkyi~ScaDDktlrv 360 (406)
T KOG0295|consen 300 -----STNGGQVLGSGSRDKT-IKIWDVSTGMCLFTLVGHDNWV------------RGVAFSP-GGKYILSCADDKTLRV 360 (406)
T ss_pred -----CCCCccEEEeecccce-EEEEeccCCeEEEEEeccccee------------eeeEEcC-CCeEEEEEecCCcEEE
Confidence 11 2234444443333 2344444332211100000111 1122222 3899999999999999
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
||+... +....++ .|...|++++||.+.++++||+.|.++.||.-
T Consensus 361 wdl~~~----------~cmk~~~------------ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 361 WDLKNL----------QCMKTLE------------AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEeccc----------eeeeccC------------CCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999 8888888 99999999999999999999999999999963
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-31 Score=237.23 Aligned_cols=306 Identities=11% Similarity=0.124 Sum_probs=223.6
Q ss_pred cCCCceeEEEECCCCc-EEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCC-CCCCceeEEEeeCCCCCEE
Q 037120 94 FGKPGISALDFDCKGI-YLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHI-PLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~-~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~-~~~~~V~~v~~~~~~~~~l 171 (489)
.|+..|.+++|+|-.. +||+|+.|-+.++|++.......... -.+......-++. ....+|++++|+.+|. +|
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q----~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~-~L 250 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ----LVLRHCIREGGKSVPSNKDVTSLDWNNDGT-LL 250 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchh----hhhhhhhhhhcccCCccCCcceEEecCCCC-eE
Confidence 3777899999999877 99999999999999987511111000 0000000011111 1224599999999986 99
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++|+.| |.++||+.... .+.++..|.++|.++.|+.+|. +|++++.|+++.+||..++. +.+.
T Consensus 251 atG~~~-G~~riw~~~G~-------------l~~tl~~HkgPI~slKWnk~G~-yilS~~vD~ttilwd~~~g~--~~q~ 313 (524)
T KOG0273|consen 251 ATGSED-GEARIWNKDGN-------------LISTLGQHKGPIFSLKWNKKGT-YILSGGVDGTTILWDAHTGT--VKQQ 313 (524)
T ss_pred EEeecC-cEEEEEecCch-------------hhhhhhccCCceEEEEEcCCCC-EEEeccCCccEEEEeccCce--EEEe
Confidence 999999 99999998321 2233477999999999999999 99999999999999999887 6667
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
+.-|+.+-..+.|-.+. .+++.+.||.|+++-+..-..+.++.+|.+. |.++.|+|.|..+++..
T Consensus 314 f~~~s~~~lDVdW~~~~-~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~----V~alk~n~tg~LLaS~S---------- 378 (524)
T KOG0273|consen 314 FEFHSAPALDVDWQSND-EFATSSTDGCIHVCKVGEDRPVKTFIGHHGE----VNALKWNPTGSLLASCS---------- 378 (524)
T ss_pred eeeccCCccceEEecCc-eEeecCCCceEEEEEecCCCcceeeecccCc----eEEEEECCCCceEEEec----------
Confidence 77788876788887554 4578888999999999988889999999988 99999999888776422
Q ss_pred eEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEE
Q 037120 332 HSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLL 411 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vw 411 (489)
.|+...+....+. ....-+.+|...++.+ .|++.. .+.|.|..+..+++++.|++|++|
T Consensus 379 ------dD~TlkiWs~~~~---~~~~~l~~Hskei~t~--~wsp~g----------~v~~n~~~~~~l~sas~dstV~lw 437 (524)
T KOG0273|consen 379 ------DDGTLKIWSMGQS---NSVHDLQAHSKEIYTI--KWSPTG----------PVTSNPNMNLMLASASFDSTVKLW 437 (524)
T ss_pred ------CCCeeEeeecCCC---cchhhhhhhccceeeE--eecCCC----------CccCCCcCCceEEEeecCCeEEEE
Confidence 1111111100000 1111222333333333 344442 234445558899999999999999
Q ss_pred eccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 412 DFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 412 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
|+..+ ..+..+. .|..+|.+++|+|++.++|+|+.||.|.+|+-|.
T Consensus 438 dv~~g----------v~i~~f~------------kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~ 483 (524)
T KOG0273|consen 438 DVESG----------VPIHTLM------------KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKT 483 (524)
T ss_pred EccCC----------ceeEeec------------cCCCceEEEEecCCCcEEEecCCCCeeEeccccc
Confidence 99999 7777776 8999999999999999999999999999998764
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=234.20 Aligned_cols=282 Identities=13% Similarity=0.231 Sum_probs=218.7
Q ss_pred CCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
..+.|++++|+.+|.+||+|+.||.++||+........ +-.|.++ |.++.|+..+. .|+++
T Consensus 234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~t---------------l~~HkgP---I~slKWnk~G~-yilS~ 294 (524)
T KOG0273|consen 234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLIST---------------LGQHKGP---IFSLKWNKKGT-YILSG 294 (524)
T ss_pred ccCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhh---------------hhccCCc---eEEEEEcCCCC-EEEec
Confidence 44669999999999999999999999999988722211 1335555 99999999986 66677
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccC
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 254 (489)
+.| +++.+||...+ ... ..+.-|..+-.+|.|..+. .|++++.|+.|+|+-+.... ++..+.+
T Consensus 295 ~vD-~ttilwd~~~g-----~~~-------q~f~~~s~~~lDVdW~~~~--~F~ts~td~~i~V~kv~~~~--P~~t~~G 357 (524)
T KOG0273|consen 295 GVD-GTTILWDAHTG-----TVK-------QQFEFHSAPALDVDWQSND--EFATSSTDGCIHVCKVGEDR--PVKTFIG 357 (524)
T ss_pred cCC-ccEEEEeccCc-----eEE-------EeeeeccCCccceEEecCc--eEeecCCCceEEEEEecCCC--cceeeec
Confidence 777 99999999332 111 1124477777889998655 59999999999999987644 5667789
Q ss_pred CCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEE
Q 037120 255 SHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSI 334 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~ 334 (489)
|.+.|+++.|+|.|.+|++++.|++++||.+....+...+..|... |..+.|+|+|.....
T Consensus 358 H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hske----i~t~~wsp~g~v~~n--------------- 418 (524)
T KOG0273|consen 358 HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKE----IYTIKWSPTGPVTSN--------------- 418 (524)
T ss_pred ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccc----eeeEeecCCCCccCC---------------
Confidence 9999999999999999999999999999999999999999999988 999999999865532
Q ss_pred EeCCCCC-eEEEEEecCC---ce----EEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCC
Q 037120 335 DLDPSCS-YQLAFHLDDG---WS----GVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDH 406 (489)
Q Consensus 335 ~~~p~~~-~~~~~~~~~~---w~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~ 406 (489)
|... .++++..++. |. ..+..+..|...++.. .|+++ +.|+++|+.|+
T Consensus 419 ---~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysv--afS~~-------------------g~ylAsGs~dg 474 (524)
T KOG0273|consen 419 ---PNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSV--AFSPN-------------------GRYLASGSLDG 474 (524)
T ss_pred ---CcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEE--EecCC-------------------CcEEEecCCCC
Confidence 3322 3333333333 21 2233344444444444 44444 88999999999
Q ss_pred cEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecc
Q 037120 407 GIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 407 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~ 478 (489)
+|++|+..++ +..+... -.+.|..+.|+-.|+.|+.+-.||.++|....
T Consensus 475 ~V~iws~~~~----------~l~~s~~-------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 475 CVHIWSTKTG----------KLVKSYQ-------------GTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred eeEeccccch----------heeEeec-------------CCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999999999 7776654 45679999999999999999999999997643
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-31 Score=246.38 Aligned_cols=249 Identities=12% Similarity=0.204 Sum_probs=208.5
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+......|.++.|+|...+++++-.+|.|.|||.++...+.. ++-...+ |.+..|-+-. +-+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVks--------feV~~~P---------vRa~kfiaRk-nWi 70 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKS--------FEVSEVP---------VRAAKFIARK-NWI 70 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeee--------eeecccc---------hhhheeeecc-ceE
Confidence 444566799999999999999999999999999999554442 1111112 8888888765 488
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++|++| ..|+||+.++. .. ++++..|.+-|.+|+.+|..+ +++|+|.|-+|++||... +..|.+.
T Consensus 71 v~GsDD-~~IrVfnynt~--------ek----V~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~-~wa~~qt 135 (794)
T KOG0276|consen 71 VTGSDD-MQIRVFNYNTG--------EK----VKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWEN-EWACEQT 135 (794)
T ss_pred EEecCC-ceEEEEecccc--------ee----eEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccC-ceeeeeE
Confidence 889888 99999999433 22 233488999999999999999 999999999999999986 4558889
Q ss_pred ccCCCCceeEEEEeecC-CEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccc
Q 037120 252 STGSHGTLNSIQLHAEN-QIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQE 330 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~-~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~ 330 (489)
+.+|+..|.+++|+|.. +.+++++-|++|++|.+.+..+..++++|... |+++.|-+-|
T Consensus 136 feGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekG----VN~Vdyy~~g---------------- 195 (794)
T KOG0276|consen 136 FEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKG----VNCVDYYTGG---------------- 195 (794)
T ss_pred EcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccC----cceEEeccCC----------------
Confidence 99999999999999954 55677777999999999998889999999877 7777544321
Q ss_pred eeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 331 IHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 331 i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
+ ..|+++|++|.+|+|
T Consensus 196 ---------------------------------------------d-------------------kpylIsgaDD~tiKv 211 (794)
T KOG0276|consen 196 ---------------------------------------------D-------------------KPYLISGADDLTIKV 211 (794)
T ss_pred ---------------------------------------------C-------------------cceEEecCCCceEEE
Confidence 1 458999999999999
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
||..+. .+++.++ ||...|..+.|||.-+.|+|||+||++++|-.+.
T Consensus 212 WDyQtk----------~CV~TLe------------GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 212 WDYQTK----------SCVQTLE------------GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT 258 (794)
T ss_pred eecchH----------HHHHHhh------------cccccceEEEecCCCcEEEEecCCccEEEecCcc
Confidence 999999 9999999 9999999999999999999999999999995543
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-30 Score=232.83 Aligned_cols=323 Identities=15% Similarity=0.216 Sum_probs=219.2
Q ss_pred cCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 94 FGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
.|..-|+|+.|+|||.++|+++.||+|.|||-.+++.+.. ++. -.+|.+. |.+++|+||++ .+++
T Consensus 188 ~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~--------l~~---~~aHkGs---IfalsWsPDs~-~~~T 252 (603)
T KOG0318|consen 188 EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGE--------LED---SDAHKGS---IFALSWSPDST-QFLT 252 (603)
T ss_pred ccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEE--------ecC---CCCcccc---EEEEEECCCCc-eEEE
Confidence 3445599999999999999999999999999998665542 222 2457777 99999999987 6777
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST 253 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 253 (489)
++.| .+++|||+... .+... +...-. -.+.-..+-|. .. .|++.+.+|+|.+++...++ ..+.+.
T Consensus 253 ~SaD-kt~KIWdVs~~-----slv~t---~~~~~~-v~dqqvG~lWq--kd-~lItVSl~G~in~ln~~d~~--~~~~i~ 317 (603)
T KOG0318|consen 253 VSAD-KTIKIWDVSTN-----SLVST---WPMGST-VEDQQVGCLWQ--KD-HLITVSLSGTINYLNPSDPS--VLKVIS 317 (603)
T ss_pred ecCC-ceEEEEEeecc-----ceEEE---eecCCc-hhceEEEEEEe--CC-eEEEEEcCcEEEEecccCCC--hhheec
Confidence 7777 99999999543 22111 111001 11234455565 44 79999999999999999887 666788
Q ss_pred CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCccccee-ecCCccCCCCeeEEEeCCCCcceee----------c--
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPF-HNHKEVCHLPLTSLKLASMLEKIGT----------L-- 320 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~i~~----------~-- 320 (489)
+|...|++++.+|++.+|++|+.||.|.-||..++..-+.. +.|... |.+++-+..+.++.. +
T Consensus 318 GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nq----I~~~~~~~~~~~~t~g~Dd~l~~~~~~~ 393 (603)
T KOG0318|consen 318 GHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQ----IKGMAASESGELFTIGWDDTLRVISLKD 393 (603)
T ss_pred ccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccce----EEEEeecCCCcEEEEecCCeEEEEeccc
Confidence 99999999999999999999999999999999988763332 345544 666665554444300 0
Q ss_pred --------------------------------------cccce----eeccceeEEEeCCCCCeEEEEEecCCceEEEEe
Q 037120 321 --------------------------------------KAQSK----IVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDV 358 (489)
Q Consensus 321 --------------------------------------~~~~~----~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~ 358 (489)
..... ........++++|++..+++...|+. ..+..+
T Consensus 394 ~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgk-vhvysl 472 (603)
T KOG0318|consen 394 NGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGK-VHVYSL 472 (603)
T ss_pred CcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccce-EEEEEe
Confidence 00000 00122345556666666665555543 111111
Q ss_pred eccce-eeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhh
Q 037120 359 YNSRV-SHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTK 437 (489)
Q Consensus 359 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (489)
..+.. ....+. -....+..++++|+ +.|+++|...+.+-+||+.+. +...
T Consensus 473 ~g~~l~ee~~~~-----------~h~a~iT~vaySpd-~~yla~~Da~rkvv~yd~~s~----------~~~~------- 523 (603)
T KOG0318|consen 473 SGDELKEEAKLL-----------EHRAAITDVAYSPD-GAYLAAGDASRKVVLYDVASR----------EVKT------- 523 (603)
T ss_pred cCCcccceeeee-----------cccCCceEEEECCC-CcEEEEeccCCcEEEEEcccC----------ceec-------
Confidence 11110 000000 00011223556666 678888889999999999988 4421
Q ss_pred hcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccccccc
Q 037120 438 LKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQCTSD 484 (489)
Q Consensus 438 ~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~~~~ 484 (489)
+++.-|...|++++|+|+..++|+||.|-+|.||+.++.+...
T Consensus 524 ----~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i 566 (603)
T KOG0318|consen 524 ----NRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHI 566 (603)
T ss_pred ----ceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhhe
Confidence 2233599999999999999999999999999999999887653
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.2e-32 Score=234.62 Aligned_cols=235 Identities=20% Similarity=0.246 Sum_probs=197.3
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
......+|.|+.++ ...+++|..|.+|+|||..+..+... +.||++. |.|+.|.. .++
T Consensus 193 ~Se~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~--------------L~GHtGS---VLCLqyd~---rvi 250 (499)
T KOG0281|consen 193 RSENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKI--------------LTGHTGS---VLCLQYDE---RVI 250 (499)
T ss_pred CcccCCceEEEEec--chhhhcccccCceEEeccccHHHHHh--------------hhcCCCc---EEeeeccc---eEE
Confidence 34455679999985 45799999999999999999776663 3778888 99999964 399
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-cee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-SLE 250 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~ 250 (489)
++|+.| .+|+|||++.+ + .+.++.+|...|..+.|+ +. +++|++.|.++.+||+.++... +.+
T Consensus 251 isGSSD-sTvrvWDv~tg--e----------~l~tlihHceaVLhlrf~--ng-~mvtcSkDrsiaVWdm~sps~it~rr 314 (499)
T KOG0281|consen 251 VSGSSD-STVRVWDVNTG--E----------PLNTLIHHCEAVLHLRFS--NG-YMVTCSKDRSIAVWDMASPTDITLRR 314 (499)
T ss_pred EecCCC-ceEEEEeccCC--c----------hhhHHhhhcceeEEEEEe--CC-EEEEecCCceeEEEeccCchHHHHHH
Confidence 999999 99999999433 1 122347799999999997 34 8999999999999999987644 555
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccc
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQE 330 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~ 330 (489)
.+.+|...|+.+.|+ .+++++++.|.+|++|++.++..+.++.+|+.. |.++++.
T Consensus 315 VLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRG----IAClQYr------------------- 369 (499)
T KOG0281|consen 315 VLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRG----IACLQYR------------------- 369 (499)
T ss_pred HHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhccccc----ceehhcc-------------------
Confidence 667999999999995 569999999999999999999999999998865 4333210
Q ss_pred eeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 331 IHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 331 i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
+.++++||.|++|++
T Consensus 370 -----------------------------------------------------------------~rlvVSGSSDntIRl 384 (499)
T KOG0281|consen 370 -----------------------------------------------------------------DRLVVSGSSDNTIRL 384 (499)
T ss_pred -----------------------------------------------------------------CeEEEecCCCceEEE
Confidence 889999999999999
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecc
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~ 478 (489)
||+..+ ..+..++ ||++-|.++-| +.+.|++|+.||.|+||...
T Consensus 385 wdi~~G----------~cLRvLe------------GHEeLvRciRF--d~krIVSGaYDGkikvWdl~ 428 (499)
T KOG0281|consen 385 WDIECG----------ACLRVLE------------GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQ 428 (499)
T ss_pred Eecccc----------HHHHHHh------------chHHhhhheee--cCceeeeccccceEEEEecc
Confidence 999999 9999999 99999999999 67899999999999999643
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-30 Score=221.80 Aligned_cols=236 Identities=14% Similarity=0.208 Sum_probs=183.4
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
|..++|+|.|+++|+|+.|....||++.+..... ...-..++.+|+.- +.|+.|-+++ .|++++.|
T Consensus 100 VMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g--------~~~v~r~l~gHtgy---lScC~f~dD~--~ilT~SGD- 165 (343)
T KOG0286|consen 100 VMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEG--------NVRVSRELAGHTGY---LSCCRFLDDN--HILTGSGD- 165 (343)
T ss_pred EEEEEECCCCCeEEecCcCceeEEEecccccccc--------cceeeeeecCccce---eEEEEEcCCC--ceEecCCC-
Confidence 9999999999999999999999999998631111 11222234566666 9999999875 67777777
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEec-CCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCC
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSA-VNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHG 257 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~ 257 (489)
.++.+||++.+ +....| .||.+.|.++++.| +++ .|++|+.|+..++||+|.+. +.+.+.+|+.
T Consensus 166 ~TCalWDie~g--------~~~~~f----~GH~gDV~slsl~p~~~n-tFvSg~cD~~aklWD~R~~~--c~qtF~ghes 230 (343)
T KOG0286|consen 166 MTCALWDIETG--------QQTQVF----HGHTGDVMSLSLSPSDGN-TFVSGGCDKSAKLWDVRSGQ--CVQTFEGHES 230 (343)
T ss_pred ceEEEEEcccc--------eEEEEe----cCCcccEEEEecCCCCCC-eEEecccccceeeeeccCcc--eeEeeccccc
Confidence 99999999433 112333 89999999999999 555 99999999999999999987 8999999999
Q ss_pred ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeC
Q 037120 258 TLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLD 337 (489)
Q Consensus 258 ~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 337 (489)
.|++++|.|+|.-+++|+.|+++|+||+|..+.+..+...... .+|++++|+
T Consensus 231 DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~----------------------------~gitSv~FS 282 (343)
T KOG0286|consen 231 DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSII----------------------------CGITSVAFS 282 (343)
T ss_pred ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCccc----------------------------CCceeEEEc
Confidence 9999999999999999999999999999998776666532222 234555566
Q ss_pred CCCCeEEEEEecCC---ce----EEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 338 PSCSYQLAFHLDDG---WS----GVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 338 p~~~~~~~~~~~~~---w~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
..|++++++..|.+ |. .......||.+++.|+ ...++ +.-+.+||-|.++||
T Consensus 283 ~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl--~~s~D-------------------G~av~TgSWDs~lri 341 (343)
T KOG0286|consen 283 KSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCL--GVSPD-------------------GMAVATGSWDSTLRI 341 (343)
T ss_pred ccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEE--EECCC-------------------CcEEEecchhHheee
Confidence 66666555544443 52 3444556888887776 44455 889999999999999
Q ss_pred Ee
Q 037120 411 LD 412 (489)
Q Consensus 411 wd 412 (489)
|.
T Consensus 342 W~ 343 (343)
T KOG0286|consen 342 WA 343 (343)
T ss_pred cC
Confidence 94
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.3e-31 Score=253.60 Aligned_cols=183 Identities=15% Similarity=0.246 Sum_probs=161.0
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|...|..+.|+|+.++|++++.|++||+|.+.+..+.. .+.||..+ |..+.|+|.| +.+
T Consensus 447 L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V--------------~y~GH~~P---VwdV~F~P~G-yYF 508 (707)
T KOG0263|consen 447 LYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV--------------IYKGHLAP---VWDVQFAPRG-YYF 508 (707)
T ss_pred eecCCCceeeeeecccccceeeccCCcceeeeecccceeEE--------------EecCCCcc---eeeEEecCCc-eEE
Confidence 56677889999999999999999999999999999955544 23566666 8889999997 688
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++.| ++.++|.... ..+.+.+ .+|-..|.++.|+|+.. ++++||.|.+|++||+.++. .++.
T Consensus 509 atas~D-~tArLWs~d~--------~~PlRif----aghlsDV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~--~VRi 572 (707)
T KOG0263|consen 509 ATASHD-QTARLWSTDH--------NKPLRIF----AGHLSDVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGN--SVRI 572 (707)
T ss_pred EecCCC-ceeeeeeccc--------CCchhhh----cccccccceEEECCccc-ccccCCCCceEEEEEcCCCc--EEEE
Confidence 999888 9999999832 3345555 89999999999999998 99999999999999999998 7889
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCC
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLAS 312 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 312 (489)
+.+|.++|.+++|+|+|++|++|+.||.|.+||+.+++.+..+.+|.+. |.+|.|+.
T Consensus 573 F~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~t----i~SlsFS~ 629 (707)
T KOG0263|consen 573 FTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGT----IYSLSFSR 629 (707)
T ss_pred ecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCc----eeEEEEec
Confidence 9999999999999999999999999999999999999999999999766 77766544
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-29 Score=230.93 Aligned_cols=350 Identities=13% Similarity=0.159 Sum_probs=231.1
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccC-CCCCC------------------CCCc----------
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCN-GTLPG------------------VGLK---------- 142 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~-~~~~~------------------~g~~---------- 142 (489)
+..|...++-..|+|.|.|+|+|...|+|||||....+..-+ +...- +|.-
T Consensus 55 YtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~ 134 (603)
T KOG0318|consen 55 YTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLW 134 (603)
T ss_pred eccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEe
Confidence 455656689999999999999999999999999876332222 11100 0000
Q ss_pred ---ccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEE
Q 037120 143 ---EDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAF 219 (489)
Q Consensus 143 ---~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 219 (489)
....++.||... |.+++|-|..+..++++++| ++|-+|+- . ...|..++..|+.-|+++.|
T Consensus 135 DSG~SvGei~GhSr~---ins~~~KpsRPfRi~T~sdD-n~v~ffeG-----P-------PFKFk~s~r~HskFV~~VRy 198 (603)
T KOG0318|consen 135 DSGNSVGEITGHSRR---INSVDFKPSRPFRIATGSDD-NTVAFFEG-----P-------PFKFKSSFREHSKFVNCVRY 198 (603)
T ss_pred cCCCccceeecccee---EeeeeccCCCceEEEeccCC-CeEEEeeC-----C-------CeeeeecccccccceeeEEE
Confidence 112223456666 99999999999999999988 99999986 1 22244555889999999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEECCCCCcC-ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCC
Q 037120 220 SAVNTSRLIASDTHGVVNIWDRRVGVLP-SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHK 298 (489)
Q Consensus 220 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~ 298 (489)
+|||. +|+|++.||.|.+||-.++++. .+....+|.+.|.+++|+||+..+++++.|.+++|||+.+.+++.++....
T Consensus 199 sPDG~-~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~ 277 (603)
T KOG0318|consen 199 SPDGS-RFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGS 277 (603)
T ss_pred CCCCC-eEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCC
Confidence 99999 9999999999999999998843 222233999999999999999999999999999999999988777665322
Q ss_pred ccCCCCeeEEEeCCCCcce---------------eeccccceeeccceeEEEeCCCCCeEEEEEecCC---ce---EEEE
Q 037120 299 EVCHLPLTSLKLASMLEKI---------------GTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDG---WS---GVLD 357 (489)
Q Consensus 299 ~~~~~~v~~l~~~~~~~~i---------------~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~---w~---~~~~ 357 (489)
....+.|-+ -|..+ ..+ .+.......|...|+.+..+|++.++++++.|+. |. +.-+
T Consensus 278 ~v~dqqvG~-lWqkd-~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 278 TVEDQQVGC-LWQKD-HLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred chhceEEEE-EEeCC-eEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 211111222 23311 111 1111334456677778888888777777777665 41 0000
Q ss_pred ee--ccceeeec--------------------------------------CCCCCCcCCCC---------ccccccC---
Q 037120 358 VY--NSRVSHVH--------------------------------------CPPPAWLSDSN---------NSADQLH--- 385 (489)
Q Consensus 358 ~~--~~~~~~~~--------------------------------------~~~~~~~~~~~---------~~~~~~~--- 385 (489)
.. .+|.+.+. +.|........ ..+..+.
T Consensus 356 ~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~ 435 (603)
T KOG0318|consen 356 RLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQT 435 (603)
T ss_pred ccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCC
Confidence 00 11111110 00000000000 0000000
Q ss_pred ----------CCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEE
Q 037120 386 ----------LRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACV 455 (489)
Q Consensus 386 ----------~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va 455 (489)
...++.+|+ +.+++.|++|+.|+||.+... +...+.. ...|.++|++++
T Consensus 436 ~~~~~~~~y~~s~vAv~~~-~~~vaVGG~Dgkvhvysl~g~----------~l~ee~~----------~~~h~a~iT~va 494 (603)
T KOG0318|consen 436 KVSSIPIGYESSAVAVSPD-GSEVAVGGQDGKVHVYSLSGD----------ELKEEAK----------LLEHRAAITDVA 494 (603)
T ss_pred cceeeccccccceEEEcCC-CCEEEEecccceEEEEEecCC----------cccceee----------eecccCCceEEE
Confidence 112333444 556666789999999999876 3322211 127999999999
Q ss_pred eeCCCCeEEeccCcceeEEEeccccc
Q 037120 456 THPLNNTIVAGTKNSSLLVVSQKQQC 481 (489)
Q Consensus 456 ~~p~~~~i~sgs~dg~i~v~~~~~~~ 481 (489)
++|++.+||+|...+.+.+|+...+-
T Consensus 495 ySpd~~yla~~Da~rkvv~yd~~s~~ 520 (603)
T KOG0318|consen 495 YSPDGAYLAAGDASRKVVLYDVASRE 520 (603)
T ss_pred ECCCCcEEEEeccCCcEEEEEcccCc
Confidence 99999999999999999999876543
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-30 Score=223.21 Aligned_cols=312 Identities=13% Similarity=0.174 Sum_probs=225.9
Q ss_pred ccccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 91 RRSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+|..|...|.+++.+|+.+++|||+.|-.-.||++.++... ..+.+|... |+++.|+.++. +
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~--------------~eltgHKDS---Vt~~~Fshdgt-l 120 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFA--------------GELTGHKDS---VTCCSFSHDGT-L 120 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcce--------------eEecCCCCc---eEEEEEccCce-E
Confidence 48889999999999999999999999999999999985422 234678777 99999999986 9
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
|++|..+ |.|+||++.++... ..+ ..--..+.=+.|+|.+. .|++|+.||.+-+|.+.+.. ..+
T Consensus 121 LATGdms-G~v~v~~~stg~~~--~~~----------~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~--~~k 184 (399)
T KOG0296|consen 121 LATGDMS-GKVLVFKVSTGGEQ--WKL----------DQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQA--LCK 184 (399)
T ss_pred EEecCCC-ccEEEEEcccCceE--EEe----------ecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcc--eee
Confidence 9999999 99999999543211 111 11223677789999888 99999999999999998854 566
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccc------
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQS------ 324 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~------ 324 (489)
.+.+|+.++++=.|.|+|+.++++..||+|++||+.+++.+..+.... . .+.+++.++..+..+.+-....
T Consensus 185 v~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e-~--~~~~~~~~~~~~~~~~~g~~e~~~~~~~ 261 (399)
T KOG0296|consen 185 VMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE-G--LELPCISLNLAGSTLTKGNSEGVACGVN 261 (399)
T ss_pred EecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccc-c--CcCCccccccccceeEeccCCccEEEEc
Confidence 888999999999999999999999999999999999999877776322 1 2355566665555441111000
Q ss_pred ------------------eeeccceeEEEeCCCC---CeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccc
Q 037120 325 ------------------KIVSQEIHSIDLDPSC---SYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQ 383 (489)
Q Consensus 325 ------------------~~~~~~i~~~~~~p~~---~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (489)
......+.++.+.|.. +..+....++.. .+++.......++.. .+.
T Consensus 262 ~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i-~iyD~a~~~~R~~c~-----he~------- 328 (399)
T KOG0296|consen 262 NGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTI-AIYDLAASTLRHICE-----HED------- 328 (399)
T ss_pred cccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceE-EEEecccchhheecc-----CCC-------
Confidence 0111223333333333 223333333321 122222211111110 011
Q ss_pred cCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeE
Q 037120 384 LHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTI 463 (489)
Q Consensus 384 ~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i 463 (489)
.+-...|.+ ..|+++++.||.|+.||.+++ +++..+. ||...|.+++.+|+.+.+
T Consensus 329 -~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG----------~l~~~y~------------GH~~~Il~f~ls~~~~~v 383 (399)
T KOG0296|consen 329 -GVTKLKWLN--TDYLLTACANGKVRQWDARTG----------QLKFTYT------------GHQMGILDFALSPQKRLV 383 (399)
T ss_pred -ceEEEEEcC--cchheeeccCceEEeeecccc----------ceEEEEe------------cCchheeEEEEcCCCcEE
Confidence 123345665 578889999999999999999 8887777 999999999999999999
Q ss_pred EeccCcceeEEEec
Q 037120 464 VAGTKNSSLLVVSQ 477 (489)
Q Consensus 464 ~sgs~dg~i~v~~~ 477 (489)
+|+|.|+..+||..
T Consensus 384 vT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 384 VTVSDDNTALVFEV 397 (399)
T ss_pred EEecCCCeEEEEec
Confidence 99999999999864
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=216.75 Aligned_cols=246 Identities=15% Similarity=0.176 Sum_probs=194.8
Q ss_pred CCCceeEEEECCCC-cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 95 GKPGISALDFDCKG-IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 95 ~~~~V~~~~fs~~g-~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
.+.++..++|++.. +.+++++.||+++|||... ...|...++.|..+ |.++.|++.....+++
T Consensus 59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~-------------~s~Pi~~~kEH~~E---V~Svdwn~~~r~~~lt 122 (311)
T KOG0277|consen 59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTM-------------PSKPIHKFKEHKRE---VYSVDWNTVRRRIFLT 122 (311)
T ss_pred cccceeEeeecCCCcceEEEEecCceEEEeccCC-------------CCcchhHHHhhhhh---eEEeccccccceeEEe
Confidence 45678999999874 6778888999999999544 22344445667777 9999999998888888
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST 253 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 253 (489)
++-| ++|++|+..... -+.++.||...|...+|+|..+++|+++|.|+++++||++...+. ..+.
T Consensus 123 sSWD-~TiKLW~~~r~~------------Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~--~~i~ 187 (311)
T KOG0277|consen 123 SSWD-GTIKLWDPNRPN------------SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKF--MSIE 187 (311)
T ss_pred eccC-CceEeecCCCCc------------ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCce--eEEE
Confidence 8998 999999983221 122348999999999999999999999999999999999987643 3467
Q ss_pred CCCCceeEEEEeecCCEEE-EEeCCCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 254 GSHGTLNSIQLHAENQIIF-AAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~-~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
.|..+|.|+.|+.-+..++ +|+.|+.||.||+|+.+. +..+.+|.-+ |+.++|+|-
T Consensus 188 ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A----VRkvk~Sph------------------ 245 (311)
T KOG0277|consen 188 AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA----VRKVKFSPH------------------ 245 (311)
T ss_pred eccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceE----EEEEecCcc------------------
Confidence 8999999999998766555 455599999999998764 6666666655 555554431
Q ss_pred eEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEE
Q 037120 332 HSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLL 411 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vw 411 (489)
...+++++|.|.++|||
T Consensus 246 ---------------------------------------------------------------~~~lLaSasYDmT~riw 262 (311)
T KOG0277|consen 246 ---------------------------------------------------------------HASLLASASYDMTVRIW 262 (311)
T ss_pred ---------------------------------------------------------------hhhHhhhccccceEEec
Confidence 14568889999999999
Q ss_pred eccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCC-CeEEeccCcceeEEEec
Q 037120 412 DFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLN-NTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 412 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~-~~i~sgs~dg~i~v~~~ 477 (489)
|.... +..++... .|++-|..+.|++.. .++|++|+|+.+.||.+
T Consensus 263 ~~~~~---------ds~~e~~~------------~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 263 DPERQ---------DSAIETVD------------HHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccccc---------hhhhhhhh------------ccceEEeccccccccCceeeecccccceeeecc
Confidence 99865 13444555 799999999999976 49999999999999974
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-29 Score=238.38 Aligned_cols=286 Identities=14% Similarity=0.218 Sum_probs=212.8
Q ss_pred cccCCCceeEEEECCCCcEEEEEec-CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATR-SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~-dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+.-....|..++|+..|++||.|+. -|.+-||++++...+.+ ..+|... |++++++||++ +
T Consensus 303 LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK--------------QQgH~~~---i~~l~YSpDgq-~ 364 (893)
T KOG0291|consen 303 LSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK--------------QQGHSDR---ITSLAYSPDGQ-L 364 (893)
T ss_pred eecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee--------------ccccccc---eeeEEECCCCc-E
Confidence 3444567999999999999999987 48999999998655542 2566666 99999999997 8
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
+++|++| |+|+|||.. ...+.+++.+|+..|+.+.|+..++ .+++++-||+|+.||+.... +.+
T Consensus 365 iaTG~eD-gKVKvWn~~------------SgfC~vTFteHts~Vt~v~f~~~g~-~llssSLDGtVRAwDlkRYr--NfR 428 (893)
T KOG0291|consen 365 IATGAED-GKVKVWNTQ------------SGFCFVTFTEHTSGVTAVQFTARGN-VLLSSSLDGTVRAWDLKRYR--NFR 428 (893)
T ss_pred EEeccCC-CcEEEEecc------------CceEEEEeccCCCceEEEEEEecCC-EEEEeecCCeEEeeeecccc--eee
Confidence 8999988 999999993 2235677799999999999999999 99999999999999998765 565
Q ss_pred ecc-CCCCceeEEEEeecCCEEEEEeCCC-eEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeecccc-----
Q 037120 251 LST-GSHGTLNSIQLHAENQIIFAAGKHG-SIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQ----- 323 (489)
Q Consensus 251 ~~~-~h~~~v~~~~~~p~~~~l~~~~~dg-~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~----- 323 (489)
++. ...-+..|++.+|.|..+++|+.|. .|++|++.+|+.+..+.+|+++ |.+++|+|++..+++....
T Consensus 429 Tft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgP----Vs~l~f~~~~~~LaS~SWDkTVRi 504 (893)
T KOG0291|consen 429 TFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGP----VSGLSFSPDGSLLASGSWDKTVRI 504 (893)
T ss_pred eecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCc----ceeeEEccccCeEEeccccceEEE
Confidence 554 3345678999999999999998865 5999999999999999999977 9999999999999664422
Q ss_pred -----------ceeeccceeEEEeCCCCCeEEEEEecCC---ceEEEEeeccceeeecCCCCC-CcCCC---CccccccC
Q 037120 324 -----------SKIVSQEIHSIDLDPSCSYQLAFHLDDG---WSGVLDVYNSRVSHVHCPPPA-WLSDS---NNSADQLH 385 (489)
Q Consensus 324 -----------~~~~~~~i~~~~~~p~~~~~~~~~~~~~---w~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~ 385 (489)
.......+..+.|.|+|+.+++.++++. |........+........... ...+. ........
T Consensus 505 W~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~ 584 (893)
T KOG0291|consen 505 WDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKT 584 (893)
T ss_pred EEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCc
Confidence 2233567899999999999999999976 321111111000000000000 00000 00111122
Q ss_pred CCcceeecCCcEEEEeecCCCcEEEEeccCC
Q 037120 386 LRKPSWLSTNSIYAVGSSSDHGIHLLDFFPG 416 (489)
Q Consensus 386 ~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~ 416 (489)
...++++++ +.++++|++.+.|++||+.++
T Consensus 585 Ftti~ySaD-G~~IlAgG~sn~iCiY~v~~~ 614 (893)
T KOG0291|consen 585 FTTICYSAD-GKCILAGGESNSICIYDVPEG 614 (893)
T ss_pred eEEEEEcCC-CCEEEecCCcccEEEEECchh
Confidence 345677777 456667789999999999887
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-29 Score=238.24 Aligned_cols=283 Identities=17% Similarity=0.255 Sum_probs=221.5
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+......|+|.+|++.-++||+|=..|...+|++.....+... .... ..|..++|+..|..+.
T Consensus 261 ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~L--------------Sis~---~~I~t~~~N~tGDWiA 323 (893)
T KOG0291|consen 261 LNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSL--------------SISD---QKILTVSFNSTGDWIA 323 (893)
T ss_pred ecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEe--------------eccc---ceeeEEEecccCCEEE
Confidence 3334456999999999999999999999999999885444321 0011 2288999999987555
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
+.++.- |.+.||+... ..++....+|...+++++++|||+ +++||+.||.|+|||..++- |+.+
T Consensus 324 ~g~~kl-gQLlVweWqs------------EsYVlKQQgH~~~i~~l~YSpDgq-~iaTG~eDgKVKvWn~~Sgf--C~vT 387 (893)
T KOG0291|consen 324 FGCSKL-GQLLVWEWQS------------ESYVLKQQGHSDRITSLAYSPDGQ-LIATGAEDGKVKVWNTQSGF--CFVT 387 (893)
T ss_pred EcCCcc-ceEEEEEeec------------cceeeeccccccceeeEEECCCCc-EEEeccCCCcEEEEeccCce--EEEE
Confidence 555555 8999999932 223334488999999999999999 99999999999999999887 8889
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
+..|++.|+.+.|+..|+.+++.+-||+|+.||+...+..++|...... ...+++..|.|..+
T Consensus 388 FteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~---QfscvavD~sGelV-------------- 450 (893)
T KOG0291|consen 388 FTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPI---QFSCVAVDPSGELV-------------- 450 (893)
T ss_pred eccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCce---eeeEEEEcCCCCEE--------------
Confidence 9999999999999999999999999999999999999888888753321 24555555555544
Q ss_pred eEEEeCCCCCeEEEEEecCC----ce----EEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeec
Q 037120 332 HSIDLDPSCSYQLAFHLDDG----WS----GVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSS 403 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~----w~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs 403 (489)
.++..|.- |+ +++++..||...+.+. +|.+. +..+++||
T Consensus 451 ------------~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l--~f~~~-------------------~~~LaS~S 497 (893)
T KOG0291|consen 451 ------------CAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGL--SFSPD-------------------GSLLASGS 497 (893)
T ss_pred ------------EeeccceEEEEEEEeecCeeeehhcCCCCcceee--EEccc-------------------cCeEEecc
Confidence 33333222 42 6788888888887766 55555 66999999
Q ss_pred CCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 404 SDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 404 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
.|.+||+||+-... ..++.+ .+...|++++|+|+|..||+++.||.|.+|..|.
T Consensus 498 WDkTVRiW~if~s~---------~~vEtl-------------~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~ 551 (893)
T KOG0291|consen 498 WDKTVRIWDIFSSS---------GTVETL-------------EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKE 551 (893)
T ss_pred ccceEEEEEeeccC---------ceeeeE-------------eeccceeEEEEcCCCCeEEEEEecceEEEEEhhh
Confidence 99999999986551 233333 3777899999999999999999999999997654
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=229.16 Aligned_cols=285 Identities=19% Similarity=0.271 Sum_probs=210.8
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|...|.+++|+|++++|++++.||.|++|++.+..... ....|... +..+.|+|++. .+
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~--------------~~~~~~~~---i~~~~~~~~~~-~l 66 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR--------------TLKGHTGP---VRDVAASADGT-YL 66 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE--------------EEecCCcc---eeEEEECCCCC-EE
Confidence 45567789999999999999999999999999998743222 12334444 78899999984 77
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++.| |.|++||+.... . ... +..|...|.++.|++++. ++++++.|+.|++||+++++ ....
T Consensus 67 ~~~~~~-~~i~i~~~~~~~-----~---~~~----~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~--~~~~ 130 (289)
T cd00200 67 ASGSSD-KTIRLWDLETGE-----C---VRT----LTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGK--CLTT 130 (289)
T ss_pred EEEcCC-CeEEEEEcCccc-----c---eEE----EeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcE--EEEE
Confidence 777777 999999994321 1 111 256778999999999977 88888889999999999755 4555
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
+..|...+.+++|+|++.++++++.||.|++||+++++.+..+..|... +.++.|+|++..+..
T Consensus 131 ~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~------------ 194 (289)
T cd00200 131 LRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGE----VNSVAFSPDGEKLLS------------ 194 (289)
T ss_pred eccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccc----cceEEECCCcCEEEE------------
Confidence 6678899999999999888888777999999999988888888777656 888888887755432
Q ss_pred eEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEE
Q 037120 332 HSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLL 411 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vw 411 (489)
++.++. ..+++...+....... .. ......+.|.++ +.++++++.|+.|++|
T Consensus 195 --------------~~~~~~-i~i~d~~~~~~~~~~~------~~------~~~i~~~~~~~~-~~~~~~~~~~~~i~i~ 246 (289)
T cd00200 195 --------------SSSDGT-IKLWDLSTGKCLGTLR------GH------ENGVNSVAFSPD-GYLLASGSEDGTIRVW 246 (289)
T ss_pred --------------ecCCCc-EEEEECCCCceecchh------hc------CCceEEEEEcCC-CcEEEEEcCCCcEEEE
Confidence 111110 0122221111111100 00 011233556666 6788888889999999
Q ss_pred eccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 412 DFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 412 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
|+.++ +....+. +|...|.+++|+|++..+++++.||.+.+|.
T Consensus 247 ~~~~~----------~~~~~~~------------~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 247 DLRTG----------ECVQTLS------------GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EcCCc----------eeEEEcc------------ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99887 6666666 7889999999999999999999999999984
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-30 Score=235.61 Aligned_cols=285 Identities=19% Similarity=0.287 Sum_probs=208.1
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccC---CCCC-------------------------------
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCN---GTLP------------------------------- 137 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~---~~~~------------------------------- 137 (489)
+..+...|.+++++|.|..|++|+.|-+|+.||+..+..... .+.|
T Consensus 163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D 242 (641)
T KOG0772|consen 163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLD 242 (641)
T ss_pred ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEc
Confidence 555666799999999999999999999999999986421110 0000
Q ss_pred CCCC-----------cccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeee
Q 037120 138 GVGL-----------KEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVV 206 (489)
Q Consensus 138 ~~g~-----------~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~ 206 (489)
+.|. +..-..-.||... ++|.+|+|.....+++++.| |+++|||+...... .+++++...
T Consensus 243 RdG~~~~e~~KGDQYI~Dm~nTKGHia~---lt~g~whP~~k~~FlT~s~D-gtlRiWdv~~~k~q-~qVik~k~~---- 313 (641)
T KOG0772|consen 243 RDGFEIVEFSKGDQYIRDMYNTKGHIAE---LTCGCWHPDNKEEFLTCSYD-GTLRIWDVNNTKSQ-LQVIKTKPA---- 313 (641)
T ss_pred cCCceeeeeeccchhhhhhhccCCceee---eeccccccCcccceEEecCC-CcEEEEecCCchhh-eeEEeeccC----
Confidence 0011 0111122567666 99999999999999999999 99999999655432 244443321
Q ss_pred cCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCc-CceeeccCCCC--ceeEEEEeecCCEEEEEeCCCeEEEE
Q 037120 207 GSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVL-PSLELSTGSHG--TLNSIQLHAENQIIFAAGKHGSIYLW 283 (489)
Q Consensus 207 ~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~h~~--~v~~~~~~p~~~~l~~~~~dg~i~lw 283 (489)
.+-.-.++.++|+++++ .|++|..||.|.+||.+.... +....-.+|.. .|+||.|+++|++|++-|.|+++++|
T Consensus 314 -~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvW 391 (641)
T KOG0772|consen 314 -GGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVW 391 (641)
T ss_pred -CCcccCceeeecCCCcc-hhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeee
Confidence 45566899999999999 899999999999999865432 34444558887 89999999999999999999999999
Q ss_pred EcCCCcc-cceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccc
Q 037120 284 DLRGGRT-SAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSR 362 (489)
Q Consensus 284 d~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~ 362 (489)
|+|+.+. +....+.... -+-+ .+.|||+.+.+++++.
T Consensus 392 DLrq~kkpL~~~tgL~t~--~~~t--------------------------dc~FSPd~kli~TGtS-------------- 429 (641)
T KOG0772|consen 392 DLRQFKKPLNVRTGLPTP--FPGT--------------------------DCCFSPDDKLILTGTS-------------- 429 (641)
T ss_pred eccccccchhhhcCCCcc--CCCC--------------------------ccccCCCceEEEeccc--------------
Confidence 9998754 5555443322 1223 3445555544443221
Q ss_pred eeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccC
Q 037120 363 VSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKEN 442 (489)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (489)
+.-+...+.+++||..+- +.++.+.
T Consensus 430 ------------------------------------~~~~~~~g~L~f~d~~t~----------d~v~ki~--------- 454 (641)
T KOG0772|consen 430 ------------------------------------APNGMTAGTLFFFDRMTL----------DTVYKID--------- 454 (641)
T ss_pred ------------------------------------ccCCCCCceEEEEeccce----------eeEEEec---------
Confidence 111234457889998877 6676665
Q ss_pred CcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccccccccccc
Q 037120 443 RFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQCTSDSML 487 (489)
Q Consensus 443 ~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~~~~~~~ 487 (489)
--...|..+.|||.-+.|.+|+.||.+.|+-...+|+|..|+
T Consensus 455 ---i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~~S~RGak~ 496 (641)
T KOG0772|consen 455 ---ISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPNESIRGAKL 496 (641)
T ss_pred ---CCCceEEEEeecchhhheeeecCCCceEEEECccccccchhh
Confidence 336779999999999999999999999999999999998875
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-30 Score=245.10 Aligned_cols=300 Identities=13% Similarity=0.205 Sum_probs=228.8
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
|......|..++|+|...+++++-..|.|++||..-..+.. . +..|.++ |..++|+|..+ ++
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~--------r------FdeHdGp---VRgv~FH~~qp-lF 66 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID--------R------FDEHDGP---VRGVDFHPTQP-LF 66 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh--------h------hhccCCc---cceeeecCCCC-eE
Confidence 33344568999999999999999999999999998755444 1 2446666 77899999976 99
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++|++| -.|+||+.. .+.++.++.||-+-|..+.|++.-+ .|+++|.|.+|+||+..+.+ |+..
T Consensus 67 VSGGDD-ykIkVWnYk------------~rrclftL~GHlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~--~iav 130 (1202)
T KOG0292|consen 67 VSGGDD-YKIKVWNYK------------TRRCLFTLLGHLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRK--CIAV 130 (1202)
T ss_pred EecCCc-cEEEEEecc------------cceehhhhccccceeEEeeccCCCc-eEEEccCCCeEEEEeccCCc--eEEE
Confidence 999988 999999992 3345666799999999999999999 99999999999999999988 8888
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeec-CCccCCCCeeEEEeCCCCccee----ecccccee
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHN-HKEVCHLPLTSLKLASMLEKIG----TLKAQSKI 326 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~i~----~~~~~~~~ 326 (489)
+.+|...|.|.+|+|....+++++-|.+||+||+...+.-..-.+ ..+. .+... -++..++ -.+.....
T Consensus 131 ltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~----~~~~~--~~~dLfg~~DaVVK~VLEG 204 (1202)
T KOG0292|consen 131 LTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQ----MRGQQ--GNSDLFGQTDAVVKHVLEG 204 (1202)
T ss_pred EecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhh----hhccc--cchhhcCCcCeeeeeeecc
Confidence 999999999999999999999999999999999976543111111 0000 11111 1112222 24455667
Q ss_pred eccceeEEEeCCCCCeEEEEEecCC---ce----EE--EEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcE
Q 037120 327 VSQEIHSIDLDPSCSYQLAFHLDDG---WS----GV--LDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSI 397 (489)
Q Consensus 327 ~~~~i~~~~~~p~~~~~~~~~~~~~---w~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (489)
|...|..++|.|.-+.+++++-|.. |. +. .++..||.+.+.+. .|.+. ..
T Consensus 205 HDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssv--lfhp~-------------------q~ 263 (1202)
T KOG0292|consen 205 HDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSV--LFHPH-------------------QD 263 (1202)
T ss_pred cccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceE--EecCc-------------------cc
Confidence 8889999999998776665543332 31 22 23445666666554 33333 67
Q ss_pred EEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEE
Q 037120 398 YAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLV 474 (489)
Q Consensus 398 ~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v 474 (489)
++++.|+|++|+|||+... ..++.+. .-.+.-..+|.||..+.+|+|-..|.+.+
T Consensus 264 lIlSnsEDksirVwDm~kR----------t~v~tfr------------rendRFW~laahP~lNLfAAgHDsGm~VF 318 (1202)
T KOG0292|consen 264 LILSNSEDKSIRVWDMTKR----------TSVQTFR------------RENDRFWILAAHPELNLFAAGHDSGMIVF 318 (1202)
T ss_pred eeEecCCCccEEEEecccc----------cceeeee------------ccCCeEEEEEecCCcceeeeecCCceEEE
Confidence 8999999999999999988 7777776 55678999999999999999888777766
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=258.13 Aligned_cols=308 Identities=13% Similarity=0.190 Sum_probs=200.0
Q ss_pred ccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 93 SFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
..+...|.+++|+|+|++||+|+.|+.|+|||.......... ...+.... .+... |.+++|++.....|+
T Consensus 480 ~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~------~~~~~~~~-~~~~~---v~~l~~~~~~~~~la 549 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRD------IHYPVVEL-ASRSK---LSGICWNSYIKSQVA 549 (793)
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccc------cccceEEe-cccCc---eeeEEeccCCCCEEE
Confidence 345667999999999999999999999999998652111100 00010111 12223 888999987666889
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEec-CCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSA-VNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
+++.| |+|++||+... .. ...+.+|...|++++|+| ++. +|++|+.|++|++||++++. ++..
T Consensus 550 s~~~D-g~v~lWd~~~~-----~~-------~~~~~~H~~~V~~l~~~p~~~~-~L~Sgs~Dg~v~iWd~~~~~--~~~~ 613 (793)
T PLN00181 550 SSNFE-GVVQVWDVARS-----QL-------VTEMKEHEKRVWSIDYSSADPT-LLASGSDDGSVKLWSINQGV--SIGT 613 (793)
T ss_pred EEeCC-CeEEEEECCCC-----eE-------EEEecCCCCCEEEEEEcCCCCC-EEEEEcCCCEEEEEECCCCc--EEEE
Confidence 99988 99999999322 11 222378999999999997 455 99999999999999999876 4544
Q ss_pred ccCCCCceeEEEEe-ecCCEEEEEeCCCeEEEEEcCCCc-ccceeecCCccCCCCeeEEEeCCCCcceeeccccceeecc
Q 037120 252 STGSHGTLNSIQLH-AENQIIFAAGKHGSIYLWDLRGGR-TSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQ 329 (489)
Q Consensus 252 ~~~h~~~v~~~~~~-p~~~~l~~~~~dg~i~lwd~~~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~ 329 (489)
+.. ...|.++.|+ +++.++++|+.||.|++||+++.+ .+..+.+|... |.++.|. ++..+.+......+
T Consensus 614 ~~~-~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~----V~~v~f~-~~~~lvs~s~D~~i--- 684 (793)
T PLN00181 614 IKT-KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKT----VSYVRFV-DSSTLVSSSTDNTL--- 684 (793)
T ss_pred Eec-CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCC----EEEEEEe-CCCEEEEEECCCEE---
Confidence 444 3679999995 578999999999999999999876 36677788766 8888886 44433321111000
Q ss_pred ceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEE
Q 037120 330 EIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIH 409 (489)
Q Consensus 330 ~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~ 409 (489)
.++.+. ... ....+ ..+..+.+|...+ ..++|.++ +.++++|+.|+.|+
T Consensus 685 kiWd~~--~~~-------~~~~~-~~l~~~~gh~~~i--------------------~~v~~s~~-~~~lasgs~D~~v~ 733 (793)
T PLN00181 685 KLWDLS--MSI-------SGINE-TPLHSFMGHTNVK--------------------NFVGLSVS-DGYIATGSETNEVF 733 (793)
T ss_pred EEEeCC--CCc-------cccCC-cceEEEcCCCCCe--------------------eEEEEcCC-CCEEEEEeCCCEEE
Confidence 001100 000 00000 0111222222111 12344554 56899999999999
Q ss_pred EEeccCCCCCCee-eccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 410 LLDFFPGSSSPSH-VDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 410 vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
+|+.........+ ......+..+ ....|...|.+++|+|++.++++|+.||.|.||.
T Consensus 734 iw~~~~~~~~~s~~~~~~~~~~~~----------~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 734 VYHKAFPMPVLSYKFKTIDPVSGL----------EVDDASQFISSVCWRGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred EEECCCCCceEEEecccCCccccc----------ccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence 9997654100000 0000000000 0125677899999999999999999999999995
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=223.13 Aligned_cols=247 Identities=13% Similarity=0.218 Sum_probs=196.6
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+.+|...|.|+.|+. +.|++|+.|.+|+|||++++++.. + +.+|... |..+.|+.. ++
T Consensus 233 L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~--------t------lihHcea---VLhlrf~ng---~m 290 (499)
T KOG0281|consen 233 LTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLN--------T------LIHHCEA---VLHLRFSNG---YM 290 (499)
T ss_pred hhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhh--------H------Hhhhcce---eEEEEEeCC---EE
Confidence 456777899999965 599999999999999999976665 2 2456666 888999864 88
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++.| .+|.+||+.... .+...+ .+.||...|+.+.|. .+ ++++++.|.+|++|++.+.+ ++++
T Consensus 291 vtcSkD-rsiaVWdm~sps-----~it~rr----VLvGHrAaVNvVdfd--~k-yIVsASgDRTikvW~~st~e--fvRt 355 (499)
T KOG0281|consen 291 VTCSKD-RSIAVWDMASPT-----DITLRR----VLVGHRAAVNVVDFD--DK-YIVSASGDRTIKVWSTSTCE--FVRT 355 (499)
T ss_pred EEecCC-ceeEEEeccCch-----HHHHHH----HHhhhhhheeeeccc--cc-eEEEecCCceEEEEecccee--eehh
Confidence 999998 999999994332 112222 248999999999985 55 99999999999999999988 8999
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
+.+|...|.|+.+ .++++++|++|.+|++||+..|.++..+++|++- |.++.|.
T Consensus 356 l~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeL----vRciRFd-------------------- 409 (499)
T KOG0281|consen 356 LNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL----VRCIRFD-------------------- 409 (499)
T ss_pred hhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHHh----hhheeec--------------------
Confidence 9999999999988 5899999999999999999999999999999977 6666543
Q ss_pred eEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEE
Q 037120 332 HSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLL 411 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vw 411 (489)
...+++|+.||+|+||
T Consensus 410 ----------------------------------------------------------------~krIVSGaYDGkikvW 425 (499)
T KOG0281|consen 410 ----------------------------------------------------------------NKRIVSGAYDGKIKVW 425 (499)
T ss_pred ----------------------------------------------------------------CceeeeccccceEEEE
Confidence 4468889999999999
Q ss_pred eccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccc
Q 037120 412 DFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 412 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
|+....-.. .....-.+..+. .|++.|..+.| +.-.|++++.|.+|.||....-
T Consensus 426 dl~aaldpr-a~~~~~Cl~~lv------------~hsgRVFrLQF--D~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 426 DLQAALDPR-APASTLCLRTLV------------EHSGRVFRLQF--DEFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred ecccccCCc-ccccchHHHhhh------------hccceeEEEee--cceEEEeccCCCeEEEEEcCCC
Confidence 998771000 000001112222 79999999999 5678999999999999976543
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-29 Score=237.38 Aligned_cols=309 Identities=14% Similarity=0.216 Sum_probs=242.4
Q ss_pred CCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCC-EEEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQD-EVAC 173 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~-~l~s 173 (489)
|+.+|.-++|+|.|.+||+|+.||.++|||+....+.. .+ .||.+. |.++.|+|+-.. +|++
T Consensus 104 He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th--------~f------kG~gGv---Vssl~F~~~~~~~lL~s 166 (775)
T KOG0319|consen 104 HEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH--------SF------KGHGGV---VSSLLFHPHWNRWLLAS 166 (775)
T ss_pred cCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE--------Ee------cCCCce---EEEEEeCCccchhheee
Confidence 66779999999999999999999999999999966665 23 444444 999999998544 5667
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCc-------
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVL------- 246 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~------- 246 (489)
|..| +++++||++... .+.+.+..|...|++++|.+++. .+++++.|..|.+||+.+-+.
T Consensus 167 g~~D-~~v~vwnl~~~~-----------tcl~~~~~H~S~vtsL~~~~d~~-~~ls~~RDkvi~vwd~~~~~~l~~lp~y 233 (775)
T KOG0319|consen 167 GATD-GTVRVWNLNDKR-----------TCLHTMILHKSAVTSLAFSEDSL-ELLSVGRDKVIIVWDLVQYKKLKTLPLY 233 (775)
T ss_pred cCCC-ceEEEEEcccCc-----------hHHHHHHhhhhheeeeeeccCCc-eEEEeccCcEEEEeehhhhhhhheechh
Confidence 7766 999999994321 13444577999999999999876 777777777777777321000
Q ss_pred --------------------------------------------------------------------------------
Q 037120 247 -------------------------------------------------------------------------------- 246 (489)
Q Consensus 247 -------------------------------------------------------------------------------- 246 (489)
T Consensus 234 e~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l 313 (775)
T KOG0319|consen 234 ESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDEL 313 (775)
T ss_pred hheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEcccc
Confidence
Q ss_pred --------------------------------Cc----------eeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEE
Q 037120 247 --------------------------------PS----------LELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWD 284 (489)
Q Consensus 247 --------------------------------~~----------~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd 284 (489)
+. -+.+.+|+..|.++....+|.++++|+.|.++++|-
T Consensus 314 ~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr 393 (775)
T KOG0319|consen 314 TIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWR 393 (775)
T ss_pred EEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEE
Confidence 00 012336777788888667788999999999999998
Q ss_pred cCCCcc----cceeecCCccCCCCeeEEEeCCCCcc-eeecc-------------------------ccceeeccceeEE
Q 037120 285 LRGGRT----SAPFHNHKEVCHLPLTSLKLASMLEK-IGTLK-------------------------AQSKIVSQEIHSI 334 (489)
Q Consensus 285 ~~~~~~----~~~~~~~~~~~~~~v~~l~~~~~~~~-i~~~~-------------------------~~~~~~~~~i~~~ 334 (489)
+.++.. +....+|... |.+++++..+.. +++.. .....|..+|.++
T Consensus 394 ~~~~~~~~~~~a~~~gH~~s----vgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~V 469 (775)
T KOG0319|consen 394 LNNNCSKSLCVAQANGHTNS----VGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCV 469 (775)
T ss_pred ecCCcchhhhhhhhcccccc----cceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccce
Confidence 854332 6667789888 999999877643 32211 1122357789999
Q ss_pred EeCCCCCeEEEEEecCC---ce----EEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCc
Q 037120 335 DLDPSCSYQLAFHLDDG---WS----GVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHG 407 (489)
Q Consensus 335 ~~~p~~~~~~~~~~~~~---w~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~ 407 (489)
+++|+++.+++++.|.+ |. .+..+..||...+.|. .|+.. +..++|+|.|++
T Consensus 470 aia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V--~Fs~~-------------------dq~laT~SgD~T 528 (775)
T KOG0319|consen 470 AIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCV--SFSKN-------------------DQLLATCSGDKT 528 (775)
T ss_pred EecCCCceEEecccccceeeecccCceEEEEeeCCccceEEE--Eeccc-------------------cceeEeccCCce
Confidence 99999999999999987 63 7778888998888777 66665 789999999999
Q ss_pred EEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccc
Q 037120 408 IHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 408 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
|+||.+.+. .+++.++ ||...|.-+.|-.++..|+||+.||.|+||.-|.+
T Consensus 529 vKIW~is~f----------SClkT~e------------GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 529 VKIWSISTF----------SCLKTFE------------GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN 579 (775)
T ss_pred EEEEEeccc----------eeeeeec------------CccceeEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence 999999999 9999999 99999999999999999999999999999987764
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-29 Score=214.41 Aligned_cols=299 Identities=14% Similarity=0.230 Sum_probs=209.6
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCccccc--CCCCCCCCCccccccc---ccCCCCCCceeEEEeeCC
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQC--NGTLPGVGLKEDQSKH---LLHIPLPQQLDAVRWNLA 166 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~--~~~~~~~g~~~~~~~~---~~h~~~~~~V~~v~~~~~ 166 (489)
+..|...+++-+|++||.++|+|+.|..|+|+|++..-... .+..++ ++...|+.. --|..+ |.++.|+|.
T Consensus 108 lt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~-~~qa~hPvIRTlYDH~de---vn~l~FHPr 183 (430)
T KOG0640|consen 108 LTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISG-DTQARHPVIRTLYDHVDE---VNDLDFHPR 183 (430)
T ss_pred EeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccC-CcccCCceEeehhhccCc---ccceeecch
Confidence 44566779999999999999999999999999998432111 111010 011122222 226666 889999998
Q ss_pred CCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCc
Q 037120 167 NQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVL 246 (489)
Q Consensus 167 ~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 246 (489)
.. +|++++.| ++|++||......+ +.++..+ ....|.+|.|+|.|. +|+.|..-.++++||+++-+
T Consensus 184 e~-ILiS~srD-~tvKlFDfsK~saK--rA~K~~q--------d~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~Q- 249 (430)
T KOG0640|consen 184 ET-ILISGSRD-NTVKLFDFSKTSAK--RAFKVFQ--------DTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQ- 249 (430)
T ss_pred hh-eEEeccCC-CeEEEEecccHHHH--HHHHHhh--------ccceeeeEeecCCCc-eEEEecCCCceeEEecccee-
Confidence 75 99999999 99999999533221 1111111 234899999999999 99999999999999999865
Q ss_pred Cceee---ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceee-cCCccCCCCeeEEEeCCCCcceeeccc
Q 037120 247 PSLEL---STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH-NHKEVCHLPLTSLKLASMLEKIGTLKA 322 (489)
Q Consensus 247 ~~~~~---~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~-~~~~~~~~~v~~l~~~~~~~~i~~~~~ 322 (489)
|.-. ..+|++.|+++.+++++++.++++.||.|+|||=-+++|+.++. .|.+. .|.+.
T Consensus 250 -cfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gs---evcSa-------------- 311 (430)
T KOG0640|consen 250 -CFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGS---EVCSA-------------- 311 (430)
T ss_pred -EeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCc---eeeeE--------------
Confidence 4322 23899999999999999999999999999999999999988886 44432 24444
Q ss_pred cceeeccceeEEEeCCCCCeEEEEEecCC---ce----EEEEeeccce---eeecCCCCCCcCCCCccccccCCCcceee
Q 037120 323 QSKIVSQEIHSIDLDPSCSYQLAFHLDDG---WS----GVLDVYNSRV---SHVHCPPPAWLSDSNNSADQLHLRKPSWL 392 (489)
Q Consensus 323 ~~~~~~~~i~~~~~~p~~~~~~~~~~~~~---w~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (489)
.|..+++|++..+.|.. |. +.+..|.|.- ...+.....|...
T Consensus 312 ------------~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNht---------------- 363 (430)
T KOG0640|consen 312 ------------VFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHT---------------- 363 (430)
T ss_pred ------------EEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCc----------------
Confidence 45555555555555544 31 4455554431 1112222233333
Q ss_pred cCCcEEEEee-cCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcce
Q 037120 393 STNSIYAVGS-SSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSS 471 (489)
Q Consensus 393 ~~~~~~l~sg-s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~ 471 (489)
..|++.- -..+.+.-||..+. .....+. +||.+.|..+.-+|.++.+++||.|-.
T Consensus 364 ---EdyVl~pDEas~slcsWdaRta----------dr~~l~s-----------lgHn~a~R~i~HSP~~p~FmTcsdD~r 419 (430)
T KOG0640|consen 364 ---EDYVLFPDEASNSLCSWDARTA----------DRVALLS-----------LGHNGAVRWIVHSPVEPAFMTCSDDFR 419 (430)
T ss_pred ---cceEEccccccCceeeccccch----------hhhhhcc-----------cCCCCCceEEEeCCCCCceeeecccce
Confidence 4444442 23358999999887 3333322 389999999999999999999999999
Q ss_pred eEEEecc
Q 037120 472 LLVVSQK 478 (489)
Q Consensus 472 i~v~~~~ 478 (489)
+++|-.+
T Consensus 420 aRFWyrr 426 (430)
T KOG0640|consen 420 ARFWYRR 426 (430)
T ss_pred eeeeeec
Confidence 9999765
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-29 Score=244.63 Aligned_cols=336 Identities=11% Similarity=0.116 Sum_probs=230.3
Q ss_pred ceeEEEECCCCcEEEEEe--cCCeEEEEeCCCcccccCCCCCCCCCccccc-ccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 98 GISALDFDCKGIYLVSAT--RSGCLTVHDFESLYYQCNGTLPGVGLKEDQS-KHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~--~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~-~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
.|.+++.+|+|..+|||+ .||.++||+.+..-....+... .+..+. ...-|.+. |.|+.|+|+++ .|++|
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~---~l~k~l~~m~~h~~s---v~CVR~S~dG~-~lAsG 87 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNE---NLPKHLCTMDDHDGS---VNCVRFSPDGS-YLASG 87 (942)
T ss_pred eEEEEEecCCceeEecCCccccccceeeccccccchhhhhhc---ccchhheeeccccCc---eeEEEECCCCC-eEeec
Confidence 399999999999999999 8999999998763211111000 011111 11225566 99999999997 88999
Q ss_pred ecCCCEEEEEEeccCCCC------CceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCc
Q 037120 175 STRSNVVSIYDIGYISDE------PVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPS 248 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 248 (489)
++| +.|.||+....... ......+.......+.+|...|.+++|+|++. +|++++.|++|.|||.++.+ .
T Consensus 88 SDD-~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~--~ 163 (942)
T KOG0973|consen 88 SDD-RLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFE--L 163 (942)
T ss_pred cCc-ceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccce--e
Confidence 988 99999998631000 00111122234455689999999999999999 99999999999999999986 7
Q ss_pred eeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccC--CCCeeEEEeCCCCcceeecccccee
Q 037120 249 LELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVC--HLPLTSLKLASMLEKIGTLKAQSKI 326 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~i~~~~~~~~~ 326 (489)
++.+.+|.+.|-.+.|+|-|+|+++-+.|++|++|.+.+....+.+..+-+.. ..-+..+.|+|||.++++...
T Consensus 164 ~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA---- 239 (942)
T KOG0973|consen 164 LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA---- 239 (942)
T ss_pred eeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh----
Confidence 88889999999999999999999999999999999988877766665443311 234789999999999976331
Q ss_pred eccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCC---CCCCcCCCCccccccCCCcceeecCCc-EEEEee
Q 037120 327 VSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCP---PPAWLSDSNNSADQLHLRKPSWLSTNS-IYAVGS 402 (489)
Q Consensus 327 ~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~sg 402 (489)
+. .+...+..-..++|..-.+. -||...+.+. |.-|..... . - -.--++.. ..+++|
T Consensus 240 ---------~n-~~~~~~~IieR~tWk~~~~L-vGH~~p~evvrFnP~lfe~~~~-n---g----~~~~~~~~y~i~Avg 300 (942)
T KOG0973|consen 240 ---------VN-GGKSTIAIIERGTWKVDKDL-VGHSAPVEVVRFNPKLFERNNK-N---G----TSTQPNCYYCIAAVG 300 (942)
T ss_pred ---------cc-CCcceeEEEecCCceeeeee-ecCCCceEEEEeChHHhccccc-c---C----CccCCCcceEEEEEe
Confidence 11 22223333344667522222 2333222221 111111110 0 0 00000001 368899
Q ss_pred cCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccccc
Q 037120 403 SSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQCT 482 (489)
Q Consensus 403 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~~ 482 (489)
|.|++|-||..... +.+..... -....|.+++|+|+|-.|.++|.||+|.++..+.+.+
T Consensus 301 SqDrSlSVW~T~~~----------RPl~vi~~-----------lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 301 SQDRSLSVWNTALP----------RPLFVIHN-----------LFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred cCCccEEEEecCCC----------Cchhhhhh-----------hhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHh
Confidence 99999999998655 33333220 2356899999999999999999999999999988888
Q ss_pred cccccc
Q 037120 483 SDSMLE 488 (489)
Q Consensus 483 ~~~~~~ 488 (489)
.+++.+
T Consensus 360 G~~ls~ 365 (942)
T KOG0973|consen 360 GVALSE 365 (942)
T ss_pred CcccCh
Confidence 777654
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.2e-29 Score=231.83 Aligned_cols=244 Identities=12% Similarity=0.124 Sum_probs=206.1
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
|.-.+..|++..|-+.-+++++|++|..|+||++++.+.+. .++.|..+ |.|++.+|..+ .+
T Consensus 51 feV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~--------~FeAH~Dy---------IR~iavHPt~P-~v 112 (794)
T KOG0276|consen 51 FEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVK--------TFEAHSDY---------IRSIAVHPTLP-YV 112 (794)
T ss_pred eeecccchhhheeeeccceEEEecCCceEEEEecccceeeE--------Eeeccccc---------eeeeeecCCCC-eE
Confidence 44455679999999999999999999999999999977666 46666666 99999999987 77
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
+++++| -+|++||.. .... +..++.||+.-|.+++|+|.+++.|++++-|++|+||.+.+.. +..+
T Consensus 113 LtsSDD-m~iKlW~we-------~~wa----~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~--~nfT 178 (794)
T KOG0276|consen 113 LTSSDD-MTIKLWDWE-------NEWA----CEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH--PNFT 178 (794)
T ss_pred EecCCc-cEEEEeecc-------Ccee----eeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC--Ccee
Confidence 777777 999999992 2222 3334499999999999999999999999999999999998866 6667
Q ss_pred ccCCCCceeEEEEeecC--CEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeecc
Q 037120 252 STGSHGTLNSIQLHAEN--QIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQ 329 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~--~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~ 329 (489)
+.+|+..|+|+.+-+-| +++++|+.|.+|+|||..+-.|+.++++|... |..+.|+|.
T Consensus 179 l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~N----vs~v~fhp~---------------- 238 (794)
T KOG0276|consen 179 LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNN----VSFVFFHPE---------------- 238 (794)
T ss_pred eeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccccc----ceEEEecCC----------------
Confidence 88999999999998744 79999999999999999999999999999977 777776653
Q ss_pred ceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEE
Q 037120 330 EIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIH 409 (489)
Q Consensus 330 ~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~ 409 (489)
-.++++||+||++|
T Consensus 239 ------------------------------------------------------------------lpiiisgsEDGTvr 252 (794)
T KOG0276|consen 239 ------------------------------------------------------------------LPIIISGSEDGTVR 252 (794)
T ss_pred ------------------------------------------------------------------CcEEEEecCCccEE
Confidence 23578899999999
Q ss_pred EEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEE
Q 037120 410 LLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVV 475 (489)
Q Consensus 410 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~ 475 (489)
||+-.+- +....+. ---+.|.|++.++.+..|+.|..+|.+.|=
T Consensus 253 iWhs~Ty----------~lE~tLn------------~gleRvW~I~~~k~~~~i~vG~Deg~i~v~ 296 (794)
T KOG0276|consen 253 IWNSKTY----------KLEKTLN------------YGLERVWCIAAHKGDGKIAVGFDEGSVTVK 296 (794)
T ss_pred EecCcce----------ehhhhhh------------cCCceEEEEeecCCCCeEEEeccCCcEEEE
Confidence 9998776 4444444 334689999999999999999999999883
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=225.39 Aligned_cols=187 Identities=14% Similarity=0.284 Sum_probs=159.8
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCccccccccc-CCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLL-HIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~-h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..|...|+++.|+++|.++++|..+|.|++|+..-..... ... |... |++++|+|.. ..
T Consensus 134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~---------------~~ahh~ea---IRdlafSpnD-sk 194 (464)
T KOG0284|consen 134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI---------------IQAHHAEA---IRDLAFSPND-SK 194 (464)
T ss_pred hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH---------------hhHhhhhh---hheeccCCCC-ce
Confidence 46677889999999999999999999999999876521111 122 2244 9999999965 58
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
++++++| |+|+|||......+ .. +.||.-.|.+++|+|.-. +|+++|.|..|++||.++++ |+-
T Consensus 195 F~t~SdD-g~ikiWdf~~~kee--------~v----L~GHgwdVksvdWHP~kg-LiasgskDnlVKlWDprSg~--cl~ 258 (464)
T KOG0284|consen 195 FLTCSDD-GTIKIWDFRMPKEE--------RV----LRGHGWDVKSVDWHPTKG-LIASGSKDNLVKLWDPRSGS--CLA 258 (464)
T ss_pred eEEecCC-CeEEEEeccCCchh--------he----eccCCCCcceeccCCccc-eeEEccCCceeEeecCCCcc--hhh
Confidence 8899988 99999999544322 22 278999999999999988 99999999999999999998 888
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
.+..|+..|..+.|+|++++|+++|.|..++++|+|+.+.+..+.+|+.. |+++.|+|-..-+
T Consensus 259 tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkd----v~~~~WhP~~~~l 321 (464)
T KOG0284|consen 259 TLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKD----VTSLTWHPLNESL 321 (464)
T ss_pred hhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhh----heeeccccccccc
Confidence 88899999999999999999999999999999999998999999999988 9999999966443
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-27 Score=203.94 Aligned_cols=292 Identities=17% Similarity=0.190 Sum_probs=203.6
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
|......|.++.|+++|.+|++++.|-+++|||..++..... .+ ...++|..++|-.....++
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t----------------i~-skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT----------------IN-SKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE----------------ee-cccccccEEEEecCCceEE
Confidence 333445699999999999999999999999999998655542 11 1123377888876655455
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
.+....|.+|+.-++.. -+..+. +.||...|++|+.+|-+. .|++++.|++|++||+|..+ |...
T Consensus 73 ~sStk~d~tIryLsl~d--------NkylRY----F~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~--cqg~ 137 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHD--------NKYLRY----FPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKK--CQGL 137 (311)
T ss_pred EccCCCCCceEEEEeec--------CceEEE----cCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCC--CceE
Confidence 54443348999999932 222344 499999999999999997 99999999999999999766 4333
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc--cceeecCCccCCCCeeEEEeCCCCcceeeccccceeecc
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT--SAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQ 329 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~ 329 (489)
+. ...-..++|+|.|-+++++...+.|+|||+|.... ..++.-.. ....
T Consensus 138 l~--~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~---------------------------~~~~ 188 (311)
T KOG1446|consen 138 LN--LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD---------------------------NDEA 188 (311)
T ss_pred Ee--cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC---------------------------CCcc
Confidence 32 23345689999999988888777999999998532 22222110 1223
Q ss_pred ceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEE
Q 037120 330 EIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIH 409 (489)
Q Consensus 330 ~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~ 409 (489)
+...+.|+|+|++++..+. ++|..+++.++|.+...+.. ..+.. ...-..+|.|+ +.++++|+.||+|+
T Consensus 189 ew~~l~FS~dGK~iLlsT~-~s~~~~lDAf~G~~~~tfs~------~~~~~---~~~~~a~ftPd-s~Fvl~gs~dg~i~ 257 (311)
T KOG1446|consen 189 EWTDLEFSPDGKSILLSTN-ASFIYLLDAFDGTVKSTFSG------YPNAG---NLPLSATFTPD-SKFVLSGSDDGTIH 257 (311)
T ss_pred ceeeeEEcCCCCEEEEEeC-CCcEEEEEccCCcEeeeEee------ccCCC---CcceeEEECCC-CcEEEEecCCCcEE
Confidence 4456677777777776553 34556777777765442221 11000 00011334444 78999999999999
Q ss_pred EEeccCCCCCCeeeccCcccchhhHhhhhcccCCccc-CCCceEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 410 LLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVP-LSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 410 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
+|++.++ ..+..+. + +.+++.++-|.|...++||++ ..+.+|..+.
T Consensus 258 vw~~~tg----------~~v~~~~------------~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw~p~~ 304 (311)
T KOG1446|consen 258 VWNLETG----------KKVAVLR------------GPNGGPVSCVRFNPRYAMFVSAS--SNLVFWLPDE 304 (311)
T ss_pred EEEcCCC----------cEeeEec------------CCCCCCccccccCCceeeeeecC--ceEEEEeccc
Confidence 9999999 6766665 5 788999999999999988865 5677776654
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.8e-28 Score=201.64 Aligned_cols=295 Identities=14% Similarity=0.123 Sum_probs=202.4
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|+..++.+.|+.+|++|.+++.|.++.||-..+++..- + +.||++. |.|++.+-+.. .+
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG--------t------y~GHtGa---vW~~Did~~s~-~l 67 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG--------T------YDGHTGA---VWCCDIDWDSK-HL 67 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee--------e------ecCCCce---EEEEEecCCcc-ee
Confidence 45588889999999999999999999999999776533332 3 3667777 99999988875 78
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-----CCCcEEEEECCCCC-
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-----THGVVNIWDRRVGV- 245 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-----~dg~i~iwd~~~~~- 245 (489)
++|+.| .++++||+..+ +.+.... -..+|..+.|+++|+ +++.+. ..+.|.++|++...
T Consensus 68 iTGSAD-~t~kLWDv~tG-----k~la~~k--------~~~~Vk~~~F~~~gn-~~l~~tD~~mg~~~~v~~fdi~~~~~ 132 (327)
T KOG0643|consen 68 ITGSAD-QTAKLWDVETG-----KQLATWK--------TNSPVKRVDFSFGGN-LILASTDKQMGYTCFVSVFDIRDDSS 132 (327)
T ss_pred eecccc-ceeEEEEcCCC-----cEEEEee--------cCCeeEEEeeccCCc-EEEEEehhhcCcceEEEEEEccCChh
Confidence 888888 99999999544 3333333 234899999999998 665554 34679999998432
Q ss_pred ----cCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCCCcceeec
Q 037120 246 ----LPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASMLEKIGTL 320 (489)
Q Consensus 246 ----~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~ 320 (489)
..++..+..+.+.++.+-|.|-+++|++|..||.|.+||+++|+. +...+.|... |+.+++++|..++.
T Consensus 133 ~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~----Ind~q~s~d~T~Fi-- 206 (327)
T KOG0643|consen 133 DIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSK----INDLQFSRDRTYFI-- 206 (327)
T ss_pred hhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccc----cccccccCCcceEE--
Confidence 113434556778999999999999999999999999999999865 5555556655 77776666665554
Q ss_pred cccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEE
Q 037120 321 KAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAV 400 (489)
Q Consensus 321 ~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 400 (489)
+.+.|.+ .++++..+..+.+.+.. . .++...+.+|-....+.
T Consensus 207 ------------------------T~s~Dtt-akl~D~~tl~v~Kty~t------e-------~PvN~aaisP~~d~Vil 248 (327)
T KOG0643|consen 207 ------------------------TGSKDTT-AKLVDVRTLEVLKTYTT------E-------RPVNTAAISPLLDHVIL 248 (327)
T ss_pred ------------------------ecccCcc-ceeeeccceeeEEEeee------c-------ccccceecccccceEEe
Confidence 3333322 12333333333332211 1 11223344454577777
Q ss_pred eecCCCcEEEEeccCCCCCC-------eeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeE
Q 037120 401 GSSSDHGIHLLDFFPGSSSP-------SHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLL 473 (489)
Q Consensus 401 sgs~d~~i~vwd~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~ 473 (489)
+|+.+.. |+.+...+. .|.-+.+++..++ +|-++|++|||||+|...+|||+||.|+
T Consensus 249 gGGqeA~----dVTTT~~r~GKFEArFyh~i~eEEigrvk------------GHFGPINsvAfhPdGksYsSGGEDG~VR 312 (327)
T KOG0643|consen 249 GGGQEAM----DVTTTSTRAGKFEARFYHLIFEEEIGRVK------------GHFGPINSVAFHPDGKSYSSGGEDGYVR 312 (327)
T ss_pred cCCceee----eeeeecccccchhhhHHHHHHHHHhcccc------------ccccCcceeEECCCCcccccCCCCceEE
Confidence 7776643 333321111 1111223444444 9999999999999999999999999999
Q ss_pred EEeccc
Q 037120 474 VVSQKQ 479 (489)
Q Consensus 474 v~~~~~ 479 (489)
|...++
T Consensus 313 ~h~Fd~ 318 (327)
T KOG0643|consen 313 LHHFDS 318 (327)
T ss_pred EEEecc
Confidence 965543
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.2e-29 Score=217.00 Aligned_cols=262 Identities=15% Similarity=0.188 Sum_probs=198.9
Q ss_pred ccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEE
Q 037120 149 LLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLI 228 (489)
Q Consensus 149 ~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 228 (489)
.+|... |+.+-|+|+-. +++++++| ++|++||...+. +...+.||++.|.+|+|+..|+ +++
T Consensus 105 ~g~r~~---vt~v~~hp~~~-~v~~as~d-~tikv~D~~tg~------------~e~~LrGHt~sv~di~~~a~Gk-~l~ 166 (406)
T KOG0295|consen 105 AGHRSS---VTRVIFHPSEA-LVVSASED-ATIKVFDTETGE------------LERSLRGHTDSVFDISFDASGK-YLA 166 (406)
T ss_pred hccccc---eeeeeeccCce-EEEEecCC-ceEEEEEccchh------------hhhhhhccccceeEEEEecCcc-EEE
Confidence 446555 88899999864 78888877 999999994321 1223589999999999999999 999
Q ss_pred EEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEE
Q 037120 229 ASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSL 308 (489)
Q Consensus 229 s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l 308 (489)
+++.|-.+++||..+. ..|++...+|+..|.+++|-|.|.++++++.|.+|+.||+.+|-++++|.+|.+. |..+
T Consensus 167 tcSsDl~~~LWd~~~~-~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ew----vr~v 241 (406)
T KOG0295|consen 167 TCSSDLSAKLWDFDTF-FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEW----VRMV 241 (406)
T ss_pred ecCCccchhheeHHHH-HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHh----EEEE
Confidence 9999999999999873 3377788899999999999999999999999999999999999999999999999 9999
Q ss_pred EeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCc
Q 037120 309 KLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRK 388 (489)
Q Consensus 309 ~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (489)
+.+.||..+++........ ....... ......++|...+.|+ .|.+.... . .+..
T Consensus 242 ~v~~DGti~As~s~dqtl~-----------------vW~~~t~--~~k~~lR~hEh~vEci--~wap~~~~--~--~i~~ 296 (406)
T KOG0295|consen 242 RVNQDGTIIASCSNDQTLR-----------------VWVVATK--QCKAELREHEHPVECI--AWAPESSY--P--SISE 296 (406)
T ss_pred EecCCeeEEEecCCCceEE-----------------EEEeccc--hhhhhhhccccceEEE--EecccccC--c--chhh
Confidence 9999988887532111111 1100000 0112233343333333 22222100 0 0000
Q ss_pred ceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccC
Q 037120 389 PSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTK 468 (489)
Q Consensus 389 ~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~ 468 (489)
..-..+++.+++++|.|++|++||+.++ ..+..+. +|.+.|.+++|||.|++|+|+.+
T Consensus 297 at~~~~~~~~l~s~SrDktIk~wdv~tg----------~cL~tL~------------ghdnwVr~~af~p~Gkyi~ScaD 354 (406)
T KOG0295|consen 297 ATGSTNGGQVLGSGSRDKTIKIWDVSTG----------MCLFTLV------------GHDNWVRGVAFSPGGKYILSCAD 354 (406)
T ss_pred ccCCCCCccEEEeecccceEEEEeccCC----------eEEEEEe------------cccceeeeeEEcCCCeEEEEEec
Confidence 0011224789999999999999999999 8888888 99999999999999999999999
Q ss_pred cceeEEEecccc
Q 037120 469 NSSLLVVSQKQQ 480 (489)
Q Consensus 469 dg~i~v~~~~~~ 480 (489)
|++++||+-+.+
T Consensus 355 Dktlrvwdl~~~ 366 (406)
T KOG0295|consen 355 DKTLRVWDLKNL 366 (406)
T ss_pred CCcEEEEEeccc
Confidence 999999987653
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=8e-28 Score=232.41 Aligned_cols=265 Identities=17% Similarity=0.173 Sum_probs=174.1
Q ss_pred cCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccc-----------------------cC-C---------------
Q 037120 94 FGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQ-----------------------CN-G--------------- 134 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~-----------------------~~-~--------------- 134 (489)
+|..+|.++.||+||+|||+|+.||.|+||.+...+.. .. +
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 67778999999999999999999999999987651000 00 0
Q ss_pred -----CCCCCC--CcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeec
Q 037120 135 -----TLPGVG--LKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVG 207 (489)
Q Consensus 135 -----~~~~~g--~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 207 (489)
++..+. ...|...+.||+.. |..+.|+.++ +|++++.| .+|++|++. ....|..
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~D---ILDlSWSKn~--fLLSSSMD-KTVRLWh~~-----~~~CL~~-------- 405 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTAD---ILDLSWSKNN--FLLSSSMD-KTVRLWHPG-----RKECLKV-------- 405 (712)
T ss_pred CccccCCCccccccccchhhhhccchh---heecccccCC--eeEecccc-ccEEeecCC-----CcceeeE--------
Confidence 000000 01223345778888 8889999874 89999999 999999993 2233332
Q ss_pred CCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 037120 208 SDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 208 ~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~ 287 (489)
-.|.+-|+||+|+|.+.++|++|+-||.|+||++...+ ++... .-..-|++++|.|+|++.++|+.+|.+++|+...
T Consensus 406 F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~--Vv~W~-Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~ 482 (712)
T KOG0283|consen 406 FSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKK--VVDWN-DLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEG 482 (712)
T ss_pred EecCCeeEEEEecccCCCcEeecccccceEEeecCcCe--eEeeh-hhhhhheeEEeccCCceEEEEEeccEEEEEEccC
Confidence 33899999999999988899999999999999998765 33222 3347899999999999999999999999999998
Q ss_pred CcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCe-EEEEEecCCceEEEEeeccceeee
Q 037120 288 GRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSY-QLAFHLDDGWSGVLDVYNSRVSHV 366 (489)
Q Consensus 288 ~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~-~~~~~~~~~w~~~~~~~~~~~~~~ 366 (489)
.+....+.-+... ..+.....|+.+.|.|.... +++.+.|.. .++++..+-.+...
T Consensus 483 lk~~~~~~I~~~~----------------------~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSr-IRI~d~~~~~lv~K 539 (712)
T KOG0283|consen 483 LKLVSDFHIRLHN----------------------KKKKQGKRITGLQFFPGDPDEVLVTSNDSR-IRIYDGRDKDLVHK 539 (712)
T ss_pred CeEEEeeeEeecc----------------------CccccCceeeeeEecCCCCCeEEEecCCCc-eEEEeccchhhhhh
Confidence 7654333311100 00111224566666655543 444444432 23333311111111
Q ss_pred cCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEecc
Q 037120 367 HCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFF 414 (489)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~ 414 (489)
+. .+.... ..-...|+. ++.++|+|++|..|+||++.
T Consensus 540 fK---G~~n~~-------SQ~~Asfs~-Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 540 FK---GFRNTS-------SQISASFSS-DGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred hc---ccccCC-------cceeeeEcc-CCCEEEEeecCceEEEEeCC
Confidence 11 111110 001122333 38999999999999999974
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-27 Score=224.47 Aligned_cols=221 Identities=15% Similarity=0.168 Sum_probs=181.1
Q ss_pred ecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEc
Q 037120 206 VGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDL 285 (489)
Q Consensus 206 ~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~ 285 (489)
+..||...|.+++++.+.. .+++|+ .+.+++|+..+.+ |++++. .+.+.+..|-|.++++++|...|.+.+||+
T Consensus 368 ~~~GHR~dVRsl~vS~d~~-~~~Sga-~~SikiWn~~t~k--ciRTi~--~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdl 441 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSI-LLASGA-GESIKIWNRDTLK--CIRTIT--CGYILASKFVPGDRYIVLGTKNGELQVFDL 441 (888)
T ss_pred eeccchhheeEEEeecCce-eeeecC-CCcEEEEEccCcc--eeEEec--cccEEEEEecCCCceEEEeccCCceEEEEe
Confidence 3468999999999998776 566555 6899999999877 888776 558999999999999999999999999999
Q ss_pred CCCcccceeecCCccCCCCeeEEEeCCCCcceeeccc----------------------------cceeeccceeEEEeC
Q 037120 286 RGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKA----------------------------QSKIVSQEIHSIDLD 337 (489)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~----------------------------~~~~~~~~i~~~~~~ 337 (489)
.+...+.+++.|.+. |.+++.+||+..+.+... ........|.++.+|
T Consensus 442 aS~~l~Eti~AHdga----IWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~S 517 (888)
T KOG0306|consen 442 ASASLVETIRAHDGA----IWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVS 517 (888)
T ss_pred ehhhhhhhhhccccc----eeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEc
Confidence 999999999999999 999999999987732211 011225678999999
Q ss_pred CCCCeEEEEEecCCce-EEEEe------eccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 338 PSCSYQLAFHLDDGWS-GVLDV------YNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 338 p~~~~~~~~~~~~~w~-~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
||++++++.-++++.. -.++. .-||...+.|. ..+++ +.+++|||.|.+|+|
T Consensus 518 pdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~sm--DIS~D-------------------SklivTgSADKnVKi 576 (888)
T KOG0306|consen 518 PDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSM--DISPD-------------------SKLIVTGSADKNVKI 576 (888)
T ss_pred CCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEE--eccCC-------------------cCeEEeccCCCceEE
Confidence 9999999999998832 12222 23666666655 44444 889999999999999
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
|-+.-+ .+-..+- +|.+.|.+|.|-|....+-++|.||.+.-|..++
T Consensus 577 WGLdFG----------DCHKS~f------------AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k 623 (888)
T KOG0306|consen 577 WGLDFG----------DCHKSFF------------AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK 623 (888)
T ss_pred eccccc----------hhhhhhh------------cccCceeEEEEcccceeEEEecCcceEEeechhh
Confidence 999988 6666666 8999999999999999999999999999996654
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-28 Score=203.73 Aligned_cols=283 Identities=17% Similarity=0.218 Sum_probs=208.6
Q ss_pred cccCCCceeEEEEC---CCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCC
Q 037120 92 RSFGKPGISALDFD---CKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQ 168 (489)
Q Consensus 92 ~~~~~~~V~~~~fs---~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~ 168 (489)
...|...|..++|| |+|-+|++++.||.--+-+-+++.-+. + +.+|.+. |.+...+.+.
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig--------t------feghkga---vw~~~l~~na- 71 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG--------T------FEGHKGA---VWSATLNKNA- 71 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE--------e------eeccCcc---eeeeecCchh-
Confidence 45566779999998 479999999999987766666522221 2 3556666 7778887765
Q ss_pred CEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCc
Q 037120 169 DEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPS 248 (489)
Q Consensus 169 ~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 248 (489)
...++++.| -+-+|||.-.+ ..+.. ..|..-|.+++|+.|.+ .|++|+.+..++|||++..+.+.
T Consensus 72 ~~aasaaad-ftakvw~a~tg-----delhs--------f~hkhivk~~af~~ds~-~lltgg~ekllrvfdln~p~App 136 (334)
T KOG0278|consen 72 TRAASAAAD-FTAKVWDAVTG-----DELHS--------FEHKHIVKAVAFSQDSN-YLLTGGQEKLLRVFDLNRPKAPP 136 (334)
T ss_pred hhhhhhccc-chhhhhhhhhh-----hhhhh--------hhhhheeeeEEecccch-hhhccchHHHhhhhhccCCCCCc
Confidence 367777777 89999998433 22222 34788999999999988 99999999999999999887664
Q ss_pred eeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeec
Q 037120 249 LELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVS 328 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~ 328 (489)
. .+.+|.+.|..+.|....+.+++.+.|++||+||.+++..++++.- .. +|+++.++++|.++.... .
T Consensus 137 ~-E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s----~VtSlEvs~dG~ilTia~------g 204 (334)
T KOG0278|consen 137 K-EISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF-NS----PVTSLEVSQDGRILTIAY------G 204 (334)
T ss_pred h-hhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec-CC----CCcceeeccCCCEEEEec------C
Confidence 4 5679999999999999999999998899999999999998888774 22 388888888887764210 0
Q ss_pred cceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcE
Q 037120 329 QEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGI 408 (489)
Q Consensus 329 ~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i 408 (489)
.++.| | +.......+-+..|... ...+..|+ ..++|+|++|..+
T Consensus 205 ---ssV~F---------------w----daksf~~lKs~k~P~nV-------------~SASL~P~-k~~fVaGged~~~ 248 (334)
T KOG0278|consen 205 ---SSVKF---------------W----DAKSFGLLKSYKMPCNV-------------ESASLHPK-KEFFVAGGEDFKV 248 (334)
T ss_pred ---ceeEE---------------e----ccccccceeeccCcccc-------------ccccccCC-CceEEecCcceEE
Confidence 11111 1 11111111111111110 11122344 4677788999999
Q ss_pred EEEeccCCCCCCeeeccCcccchh-hHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 409 HLLDFFPGSSSPSHVDYNEDIESL-SERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 409 ~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
+.||+.++ +.+... + +|.++|.||.|+|+|...|+||+||+|++|-.
T Consensus 249 ~kfDy~Tg----------eEi~~~nk------------gh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 249 YKFDYNTG----------EEIGSYNK------------GHFGPVHCVRFSPDGELYASGSEDGTIRLWQT 296 (334)
T ss_pred EEEeccCC----------ceeeeccc------------CCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence 99999999 777664 5 99999999999999999999999999999953
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-27 Score=215.15 Aligned_cols=242 Identities=21% Similarity=0.262 Sum_probs=194.4
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..-...|.++.|-.||++||+|...|.|+|||..+..... . +..|... |..+.|+|+...++
T Consensus 64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR--------~------~~ah~ap---v~~~~f~~~d~t~l 126 (487)
T KOG0310|consen 64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR--------Q------LYAHQAP---VHVTKFSPQDNTML 126 (487)
T ss_pred HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH--------H------HhhccCc---eeEEEecccCCeEE
Confidence 44445679999999999999999999999999966533332 1 2446666 88899999988788
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++|++| +.+++||+... .+ ...+.+|++.|.+.+|+|...++++|||.||.|++||+|+......
T Consensus 127 ~s~sDd-~v~k~~d~s~a-----~v-------~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~-- 191 (487)
T KOG0310|consen 127 VSGSDD-KVVKYWDLSTA-----YV-------QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVV-- 191 (487)
T ss_pred EecCCC-ceEEEEEcCCc-----EE-------EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeE--
Confidence 888877 99999999322 11 2234899999999999999998999999999999999998652223
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccc
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQE 330 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~ 330 (489)
...|..+|.++.+-|.|..++++|. ..|++||+-+|.. +..+..|... |+|+++..+
T Consensus 192 elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~Kt----VTcL~l~s~----------------- 249 (487)
T KOG0310|consen 192 ELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKT----VTCLRLASD----------------- 249 (487)
T ss_pred EecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccce----EEEEEeecC-----------------
Confidence 3388999999999999998888765 5899999996554 5555568777 888764422
Q ss_pred eeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 331 IHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 331 i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
+..|++||-|+.+++
T Consensus 250 -----------------------------------------------------------------~~rLlS~sLD~~VKV 264 (487)
T KOG0310|consen 250 -----------------------------------------------------------------STRLLSGSLDRHVKV 264 (487)
T ss_pred -----------------------------------------------------------------CceEeecccccceEE
Confidence 345778899999999
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEE
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVV 475 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~ 475 (489)
||+.+- +.+..+. ..++|.+++.+|++..++.|..||.+.+=
T Consensus 265 fd~t~~----------Kvv~s~~-------------~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 265 FDTTNY----------KVVHSWK-------------YPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred EEccce----------EEEEeee-------------cccceeeEEecCCCceEEEecccceeeee
Confidence 997766 6666654 67899999999999999999999999885
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.9e-27 Score=205.37 Aligned_cols=285 Identities=15% Similarity=0.245 Sum_probs=205.6
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC--CCCEEEEEec
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA--NQDEVACAST 176 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~--~~~~l~s~~~ 176 (489)
|.++... +..+++|+.||.++|||....... ...+|.+. |.+++|.-. ....|++++.
T Consensus 108 VSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~---------------~~~Ght~~---ik~v~~v~~n~~~~~fvsas~ 167 (423)
T KOG0313|consen 108 VSSVKGA--SKWILTGSYDGTSRIWDLKGKSIK---------------TIVGHTGP---IKSVAWVIKNSSSCLFVSASM 167 (423)
T ss_pred hhhhccc--CceEEEeecCCeeEEEecCCceEE---------------EEecCCcc---eeeeEEEecCCccceEEEecC
Confidence 6666665 689999999999999999873222 23667777 888888533 2347999999
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCC------------
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVG------------ 244 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~------------ 244 (489)
| .++++|..+.+. ..+...... .||...|-+++..+++. .+++|+.|.+|+||+..+.
T Consensus 168 D-qtl~Lw~~~~~~----~~~~~~~~~----~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r 237 (423)
T KOG0313|consen 168 D-QTLRLWKWNVGE----NKVKALKVC----RGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRR 237 (423)
T ss_pred C-ceEEEEEecCch----hhhhHHhHh----cccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhh
Confidence 9 999999995432 222223323 69999999999999999 9999999999999993221
Q ss_pred -----------CcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCC
Q 037120 245 -----------VLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASM 313 (489)
Q Consensus 245 -----------~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 313 (489)
....+-.+.+|..+|.++.|++ ...+++++.|.+|+.||+.+++.+.++.+ ... +.++.++|.
T Consensus 238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ks----l~~i~~~~~ 311 (423)
T KOG0313|consen 238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKS----LNCISYSPL 311 (423)
T ss_pred hhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec-Ccc----eeEeecccc
Confidence 0112335669999999999988 66789999999999999999998777765 333 788887776
Q ss_pred CcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeec
Q 037120 314 LEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLS 393 (489)
Q Consensus 314 ~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (489)
...+++......+. -++|... .-+.+...+.||.+- .. .+.|+|
T Consensus 312 ~~Ll~~gssdr~ir-------l~DPR~~---------~gs~v~~s~~gH~nw--------Vs------------svkwsp 355 (423)
T KOG0313|consen 312 SKLLASGSSDRHIR-------LWDPRTG---------DGSVVSQSLIGHKNW--------VS------------SVKWSP 355 (423)
T ss_pred cceeeecCCCCcee-------ecCCCCC---------CCceeEEeeecchhh--------hh------------heecCC
Confidence 66665322111100 0111100 001223333444432 22 256777
Q ss_pred CCcEEEEeecCCCcEEEEeccCCCCCCeeeccCc-ccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCccee
Q 037120 394 TNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNE-DIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSL 472 (489)
Q Consensus 394 ~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i 472 (489)
.....+++||.|+++++||+++. . .+..+. +|.+.|.++.|. .+..|++||.|..|
T Consensus 356 ~~~~~~~S~S~D~t~klWDvRS~----------k~plydI~------------~h~DKvl~vdW~-~~~~IvSGGaD~~l 412 (423)
T KOG0313|consen 356 TNEFQLVSGSYDNTVKLWDVRST----------KAPLYDIA------------GHNDKVLSVDWN-EGGLIVSGGADNKL 412 (423)
T ss_pred CCceEEEEEecCCeEEEEEeccC----------CCcceeec------------cCCceEEEEecc-CCceEEeccCcceE
Confidence 78999999999999999999987 4 666777 999999999997 46689999999999
Q ss_pred EEEecc
Q 037120 473 LVVSQK 478 (489)
Q Consensus 473 ~v~~~~ 478 (489)
+++...
T Consensus 413 ~i~~~~ 418 (423)
T KOG0313|consen 413 RIFKGS 418 (423)
T ss_pred EEeccc
Confidence 998643
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.3e-28 Score=214.40 Aligned_cols=287 Identities=13% Similarity=0.177 Sum_probs=201.2
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|...|..+.|-++...|++|+.|..|++|+.....+... +.+ .+..+. |++++|.+++..+|
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~------~tL------aGs~g~---it~~d~d~~~~~~i 235 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELI------STL------AGSLGN---ITSIDFDSDNKHVI 235 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhh------hhh------hccCCC---cceeeecCCCceEE
Confidence 566777899999999989999999999999999987442221 122 222233 99999999987555
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
+ ++.| +.+++|++... ...+++.||++.|+++.|..... .+++|+.|.+|++||+.... |.+.
T Consensus 236 A-as~d-~~~r~Wnvd~~------------r~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~--C~kt 298 (459)
T KOG0288|consen 236 A-ASND-KNLRLWNVDSL------------RLRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAY--CSKT 298 (459)
T ss_pred e-ecCC-Cceeeeeccch------------hhhhhhcccccceeeehhhcccc-ceeeccccchhhhhhhhhhh--eecc
Confidence 5 4445 99999999322 13445699999999999997766 69999999999999999855 6655
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
.. ....++.|+.+ ...+++|..|++||+||.++..+...++.+. . |++|..++++
T Consensus 299 ~l-~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~----vtSl~ls~~g----------------- 353 (459)
T KOG0288|consen 299 VL-PGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-R----VTSLDLSMDG----------------- 353 (459)
T ss_pred cc-ccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-c----eeeEeeccCC-----------------
Confidence 43 23455666655 5567788889999999999988877777643 3 6666655555
Q ss_pred eEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEE
Q 037120 332 HSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLL 411 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vw 411 (489)
..+++++.|+.. .+++..+..+.+.+... .+... .....+.|+|+ +.|+++||.||.|+||
T Consensus 354 ---------~~lLsssRDdtl-~viDlRt~eI~~~~sA~-g~k~a-------sDwtrvvfSpd-~~YvaAGS~dgsv~iW 414 (459)
T KOG0288|consen 354 ---------LELLSSSRDDTL-KVIDLRTKEIRQTFSAE-GFKCA-------SDWTRVVFSPD-GSYVAAGSADGSVYIW 414 (459)
T ss_pred ---------eEEeeecCCCce-eeeecccccEEEEeecc-ccccc-------cccceeEECCC-CceeeeccCCCcEEEE
Confidence 444444333331 13333322222222211 11111 11223455555 7789999999999999
Q ss_pred eccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCC-ceEEEEeeCCCCeEEeccCcceeEEE
Q 037120 412 DFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSE-GVTACVTHPLNNTIVAGTKNSSLLVV 475 (489)
Q Consensus 412 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~va~~p~~~~i~sgs~dg~i~v~ 475 (489)
++.++ ++...+.. .+.. .|++++|+|.|..+++++.++.+.+|
T Consensus 415 ~v~tg----------KlE~~l~~-----------s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 415 SVFTG----------KLEKVLSL-----------STSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred EccCc----------eEEEEecc-----------CCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 99999 66655551 2333 79999999999999999999999998
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-26 Score=221.72 Aligned_cols=204 Identities=13% Similarity=0.089 Sum_probs=149.3
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCccc-ccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKED-QSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~-~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
.|+...+++++..+++++.+.....|+...+..+.... ..|.... ...+.+|... |.+++|+|....+|++++.
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~--~~G~~~~~~~~l~GH~~~---V~~v~fsP~d~~~LaSgS~ 96 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHT--DYGKLASNPPILLGQEGP---IIDVAFNPFDPQKLFTASE 96 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceEEeecc--ccccCCCCCceEeCCCCC---EEEEEEcCCCCCEEEEEeC
Confidence 35566677787777888888888888765533221110 0112221 2235678877 9999999944458999998
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~ 256 (489)
| ++|++||+...... .........+.+|...|.+++|+|++.++|++++.|++|+|||+++++ .+..+.+|.
T Consensus 97 D-gtIkIWdi~~~~~~-----~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~--~~~~l~~h~ 168 (493)
T PTZ00421 97 D-GTIMGWGIPEEGLT-----QNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGK--AVEVIKCHS 168 (493)
T ss_pred C-CEEEEEecCCCccc-----cccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCe--EEEEEcCCC
Confidence 8 99999999543211 001112334588999999999999875599999999999999999876 566677899
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 257 GTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
..|.+++|+|++.+|++++.|++|++||+++++.+..+.+|.+. .+..+.|.+++..+
T Consensus 169 ~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~---~~~~~~w~~~~~~i 226 (493)
T PTZ00421 169 DQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA---KSQRCLWAKRKDLI 226 (493)
T ss_pred CceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC---cceEEEEcCCCCeE
Confidence 99999999999999999999999999999999888888887654 13455666665444
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=192.78 Aligned_cols=263 Identities=13% Similarity=0.145 Sum_probs=187.7
Q ss_pred CCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC
Q 037120 168 QDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP 247 (489)
Q Consensus 168 ~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 247 (489)
.-+|++++.| .+|++|...++ ...... ......|+.+...|++. .|++++ ...|++||+++++..
T Consensus 10 ~viLvsA~YD-hTIRfWqa~tG-----~C~rTi-------qh~dsqVNrLeiTpdk~-~LAaa~-~qhvRlyD~~S~np~ 74 (311)
T KOG0315|consen 10 PVILVSAGYD-HTIRFWQALTG-----ICSRTI-------QHPDSQVNRLEITPDKK-DLAAAG-NQHVRLYDLNSNNPN 74 (311)
T ss_pred ceEEEeccCc-ceeeeeehhcC-----eEEEEE-------ecCccceeeEEEcCCcc-hhhhcc-CCeeEEEEccCCCCC
Confidence 4589999999 99999999443 222222 33456899999999998 777777 578999999998764
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeecccc----
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQ---- 323 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~---- 323 (489)
.+..+.+|..-|+++.|..+|+.+++||.||+++|||+|...+.+.++. .. ||+++..+|....+.+....
T Consensus 75 Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~-~s----pVn~vvlhpnQteLis~dqsg~ir 149 (311)
T KOG0315|consen 75 PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH-NS----PVNTVVLHPNQTELISGDQSGNIR 149 (311)
T ss_pred ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC-CC----CcceEEecCCcceEEeecCCCcEE
Confidence 6778889999999999999999999999999999999999776655553 43 49999999987655221111
Q ss_pred -------------ceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcce
Q 037120 324 -------------SKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPS 390 (489)
Q Consensus 324 -------------~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (489)
..+....|.++.+.|+|..+++....+. --++++....... .+.+-....+.....-. |
T Consensus 150 vWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~-cyvW~l~~~~~~s------~l~P~~k~~ah~~~il~-C 221 (311)
T KOG0315|consen 150 VWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGN-CYVWRLLNHQTAS------ELEPVHKFQAHNGHILR-C 221 (311)
T ss_pred EEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCcc-EEEEEccCCCccc------cceEhhheecccceEEE-E
Confidence 1122467899999999999888776665 1122222211100 00011011111111111 2
Q ss_pred eecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcc
Q 037120 391 WLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNS 470 (489)
Q Consensus 391 ~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg 470 (489)
-++.+.+||+++|.|.+++||+..... +....++ +|...|.+++|+.++.+|++|+.|+
T Consensus 222 ~lSPd~k~lat~ssdktv~iwn~~~~~---------kle~~l~------------gh~rWvWdc~FS~dg~YlvTassd~ 280 (311)
T KOG0315|consen 222 LLSPDVKYLATCSSDKTVKIWNTDDFF---------KLELVLT------------GHQRWVWDCAFSADGEYLVTASSDH 280 (311)
T ss_pred EECCCCcEEEeecCCceEEEEecCCce---------eeEEEee------------cCCceEEeeeeccCccEEEecCCCC
Confidence 233348899999999999999987650 2223445 8999999999999999999999999
Q ss_pred eeEEEeccc
Q 037120 471 SLLVVSQKQ 479 (489)
Q Consensus 471 ~i~v~~~~~ 479 (489)
..++|.-..
T Consensus 281 ~~rlW~~~~ 289 (311)
T KOG0315|consen 281 TARLWDLSA 289 (311)
T ss_pred ceeeccccc
Confidence 999997544
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-26 Score=219.13 Aligned_cols=239 Identities=15% Similarity=0.191 Sum_probs=190.5
Q ss_pred CCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCccccccccc-CCCCCCceeEEEeeCCCCCEEEEE
Q 037120 96 KPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLL-HIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~-h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
+..|+++.|+++|.+||+|..+|.|.|||..+...... + .+ |... |.+++|+. ..+.+|
T Consensus 217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~--------~------~~~h~~r---vg~laW~~---~~lssG 276 (484)
T KOG0305|consen 217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRT--------L------RGSHASR---VGSLAWNS---SVLSSG 276 (484)
T ss_pred CCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccc--------c------cCCcCce---eEEEeccC---ceEEEe
Confidence 56799999999999999999999999999988444432 1 22 4444 99999993 488999
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccC
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 254 (489)
+.| +.|..+|++..... . . .+.+|...|..++|++++. ++++|+.|+.+.|||....+ ....+..
T Consensus 277 sr~-~~I~~~dvR~~~~~----~---~----~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~--p~~~~~~ 341 (484)
T KOG0305|consen 277 SRD-GKILNHDVRISQHV----V---S----TLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPE--PKFTFTE 341 (484)
T ss_pred cCC-CcEEEEEEecchhh----h---h----hhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCcc--ccEEEec
Confidence 998 99999999643211 1 1 1488999999999999999 99999999999999996544 4556779
Q ss_pred CCCceeEEEEeecCC-EEEEEeC--CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 255 SHGTLNSIQLHAENQ-IIFAAGK--HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 255 h~~~v~~~~~~p~~~-~l~~~~~--dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
|.+.|.+++|+|... +|++||. |++|++||..++..+..+.. ... |.+|.|++..+.+.
T Consensus 342 H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt-gsQ----VcsL~Wsk~~kEi~------------- 403 (484)
T KOG0305|consen 342 HTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT-GSQ----VCSLIWSKKYKELL------------- 403 (484)
T ss_pred cceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc-CCc----eeeEEEcCCCCEEE-------------
Confidence 999999999999654 5566644 99999999999887766653 222 67776665443222
Q ss_pred eEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEE
Q 037120 332 HSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLL 411 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vw 411 (489)
..-|-.++.|.||
T Consensus 404 -------------------------------------------------------------------sthG~s~n~i~lw 416 (484)
T KOG0305|consen 404 -------------------------------------------------------------------STHGYSENQITLW 416 (484)
T ss_pred -------------------------------------------------------------------EecCCCCCcEEEE
Confidence 1113356689999
Q ss_pred eccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 412 DFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 412 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
++.+. ..+..+. +|...|..++++|++..|++|+.|.++.+|.
T Consensus 417 ~~ps~----------~~~~~l~------------gH~~RVl~la~SPdg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 417 KYPSM----------KLVAELL------------GHTSRVLYLALSPDGETIVTGAADETLRFWN 459 (484)
T ss_pred ecccc----------ceeeeec------------CCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence 99988 7777777 9999999999999999999999999999984
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=189.79 Aligned_cols=247 Identities=13% Similarity=0.227 Sum_probs=188.7
Q ss_pred ccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEE
Q 037120 149 LLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLI 228 (489)
Q Consensus 149 ~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 228 (489)
.+|... |..++|+|....+|++++.| +.|++|+...+ ..+.... ..-.+|+..|.+++|+|.|+ +|+
T Consensus 11 ~gh~~r---~W~~awhp~~g~ilAscg~D-k~vriw~~~~~-----~s~~ck~---vld~~hkrsVRsvAwsp~g~-~La 77 (312)
T KOG0645|consen 11 SGHKDR---VWSVAWHPGKGVILASCGTD-KAVRIWSTSSG-----DSWTCKT---VLDDGHKRSVRSVAWSPHGR-YLA 77 (312)
T ss_pred cCCCCc---EEEEEeccCCceEEEeecCC-ceEEEEecCCC-----CcEEEEE---eccccchheeeeeeecCCCc-EEE
Confidence 456665 88899999833489999988 99999999431 1111111 11267999999999999999 999
Q ss_pred EEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCc---ccceeecCCccCCCCe
Q 037120 229 ASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGR---TSAPFHNHKEVCHLPL 305 (489)
Q Consensus 229 s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~---~~~~~~~~~~~~~~~v 305 (489)
++|.|.++.||.-..++..++..+.+|+..|.|++|+++|.+|++++.|..|-||.+..+. ++..++.|..- |
T Consensus 78 ~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqD----V 153 (312)
T KOG0645|consen 78 SASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQD----V 153 (312)
T ss_pred EeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecccccc----c
Confidence 9999999999988877777888899999999999999999999999999999999998544 47788888866 9
Q ss_pred eEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEe-cCCceEEEEeeccceeeecCCCCCCcCCCCcccccc
Q 037120 306 TSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHL-DDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQL 384 (489)
Q Consensus 306 ~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (489)
..+.|+|....+.+..-. +...+.... ++.|. +.....+|...+.+. .|.+.
T Consensus 154 K~V~WHPt~dlL~S~SYD----------------nTIk~~~~~~dddW~-c~~tl~g~~~TVW~~--~F~~~-------- 206 (312)
T KOG0645|consen 154 KHVIWHPTEDLLFSCSYD----------------NTIKVYRDEDDDDWE-CVQTLDGHENTVWSL--AFDNI-------- 206 (312)
T ss_pred cEEEEcCCcceeEEeccC----------------CeEEEEeecCCCCee-EEEEecCccceEEEE--EecCC--------
Confidence 999999988777653211 111111112 23354 344455665555544 45554
Q ss_pred CCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEE
Q 037120 385 HLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIV 464 (489)
Q Consensus 385 ~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~ 464 (489)
+..++++++|++++||-..+. ... -|+..+..++|. ...||
T Consensus 207 -----------G~rl~s~sdD~tv~Iw~~~~~--------------~~~------------~~sr~~Y~v~W~--~~~Ia 247 (312)
T KOG0645|consen 207 -----------GSRLVSCSDDGTVSIWRLYTD--------------LSG------------MHSRALYDVPWD--NGVIA 247 (312)
T ss_pred -----------CceEEEecCCcceEeeeeccC--------------cch------------hcccceEeeeec--ccceE
Confidence 678999999999999987655 111 478899999998 67899
Q ss_pred eccCcceeEEEecc
Q 037120 465 AGTKNSSLLVVSQK 478 (489)
Q Consensus 465 sgs~dg~i~v~~~~ 478 (489)
|++.|+.|+||-..
T Consensus 248 S~ggD~~i~lf~~s 261 (312)
T KOG0645|consen 248 SGGGDDAIRLFKES 261 (312)
T ss_pred eccCCCEEEEEEec
Confidence 99999999999766
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=220.52 Aligned_cols=266 Identities=12% Similarity=0.092 Sum_probs=178.0
Q ss_pred EecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCC
Q 037120 114 ATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEP 193 (489)
Q Consensus 114 g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~ 193 (489)
|+.++.|++|+..... ....+.+|... |.+++|+|+...+|++|+.| ++|+|||+.......
T Consensus 50 GG~~gvI~L~~~~r~~--------------~v~~L~gH~~~---V~~lafsP~~~~lLASgS~D-gtIrIWDi~t~~~~~ 111 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP--------------PVIKLKGHTSS---ILDLQFNPCFSEILASGSED-LTIRVWEIPHNDESV 111 (568)
T ss_pred CCceeEEEeeecCCCc--------------eEEEEcCCCCC---EEEEEEcCCCCCEEEEEeCC-CeEEEEECCCCCccc
Confidence 6678999999987622 22234567666 99999999865699999988 999999995432111
Q ss_pred ceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEE
Q 037120 194 VEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFA 273 (489)
Q Consensus 194 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~ 273 (489)
.. .......+.+|...|.+++|+|++..+|++++.|++|+|||+++++ ....+ .|...|.+++|+|+|.+|++
T Consensus 112 -~~---i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~--~~~~i-~~~~~V~SlswspdG~lLat 184 (568)
T PTZ00420 112 -KE---IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEK--RAFQI-NMPKKLSSLKWNIKGNLLSG 184 (568)
T ss_pred -cc---cccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCc--EEEEE-ecCCcEEEEEECCCCCEEEE
Confidence 00 1112223478999999999999998567899999999999999876 33233 35678999999999999999
Q ss_pred EeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCc-
Q 037120 274 AGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGW- 352 (489)
Q Consensus 274 ~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w- 352 (489)
++.|+.|+|||+++++.+..+.+|.+. +....+ ....|++++.++++++.++..
T Consensus 185 ~s~D~~IrIwD~Rsg~~i~tl~gH~g~----~~s~~v---------------------~~~~fs~d~~~IlTtG~d~~~~ 239 (568)
T PTZ00420 185 TCVGKHMHIIDPRKQEIASSFHIHDGG----KNTKNI---------------------WIDGLGGDDNYILSTGFSKNNM 239 (568)
T ss_pred EecCCEEEEEECCCCcEEEEEecccCC----ceeEEE---------------------EeeeEcCCCCEEEEEEcCCCCc
Confidence 999999999999999988888888765 333221 112345566666666555421
Q ss_pred --eEEEEeec-cceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCccc
Q 037120 353 --SGVLDVYN-SRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDI 429 (489)
Q Consensus 353 --~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~ 429 (489)
..+++... +........ +.. ...-.+.|.++.+.++++|+.|++|++|++..+ ..
T Consensus 240 R~VkLWDlr~~~~pl~~~~l------d~~-----~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~----------~~- 297 (568)
T PTZ00420 240 REMKLWDLKNTTSALVTMSI------DNA-----SAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLG----------SI- 297 (568)
T ss_pred cEEEEEECCCCCCceEEEEe------cCC-----ccceEEeeeCCCCCEEEEEECCCeEEEEEccCC----------cE-
Confidence 23444432 111110000 000 001123444555888999999999999999766 21
Q ss_pred chhhHhhhhcccCCcccCCCceEEEEeeCCCC
Q 037120 430 ESLSERTKLKKENRFVPLSEGVTACVTHPLNN 461 (489)
Q Consensus 430 ~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~ 461 (489)
..+. . ..+..++.+++|.|...
T Consensus 298 ~~l~---------~-~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 298 RKVN---------E-YKSCSPFRSFGFLPKQI 319 (568)
T ss_pred Eeec---------c-cccCCCccceEEccccc
Confidence 1111 0 03567778888888754
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-25 Score=183.01 Aligned_cols=253 Identities=14% Similarity=0.208 Sum_probs=193.1
Q ss_pred ccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC---CCC
Q 037120 93 SFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA---NQD 169 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~---~~~ 169 (489)
..|+..|.|.+|+|+|++||+|+.|.+|++..++...+.. .-...++..|.+. |..++|-.+ +..
T Consensus 86 khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~---------~g~dle~nmhdgt---irdl~fld~~~s~~~ 153 (350)
T KOG0641|consen 86 KHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNA---------TGHDLEFNMHDGT---IRDLAFLDDPESGGA 153 (350)
T ss_pred cccCccEEEEEecCccCeEEecCCCceEEEEecccccccc---------cCcceeeeecCCc---eeeeEEecCCCcCce
Confidence 3445569999999999999999999999999888755554 2334556668888 888999643 334
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
+|++++..|..|.+=|. +...+ .+.+.+|++-|.++ ++-++- +|++|+.|.+|++||+|... ++
T Consensus 154 il~s~gagdc~iy~tdc--~~g~~----------~~a~sghtghilal-yswn~~-m~~sgsqdktirfwdlrv~~--~v 217 (350)
T KOG0641|consen 154 ILASAGAGDCKIYITDC--GRGQG----------FHALSGHTGHILAL-YSWNGA-MFASGSQDKTIRFWDLRVNS--CV 217 (350)
T ss_pred EEEecCCCcceEEEeec--CCCCc----------ceeecCCcccEEEE-EEecCc-EEEccCCCceEEEEeeeccc--ee
Confidence 77777644456666665 22221 23348999999887 455677 99999999999999999876 55
Q ss_pred eecc--CC-----CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccc
Q 037120 250 ELST--GS-----HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKA 322 (489)
Q Consensus 250 ~~~~--~h-----~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~ 322 (489)
..+. .| ++.|.+++..|.|++|++|-.|....+||+|.++.++.+..|... |+++.|+|.
T Consensus 218 ~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsad----ir~vrfsp~--------- 284 (350)
T KOG0641|consen 218 NTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSAD----IRCVRFSPG--------- 284 (350)
T ss_pred eeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccc----eeEEEeCCC---------
Confidence 5443 22 357899999999999999999999999999999999999888766 777665542
Q ss_pred cceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEee
Q 037120 323 QSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGS 402 (489)
Q Consensus 323 ~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 402 (489)
..|+++|
T Consensus 285 -------------------------------------------------------------------------a~yllt~ 291 (350)
T KOG0641|consen 285 -------------------------------------------------------------------------AHYLLTC 291 (350)
T ss_pred -------------------------------------------------------------------------ceEEEEe
Confidence 5578889
Q ss_pred cCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 403 SSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 403 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
|.|..|++-|+... ....+..+-+ ..|.+.+..+-|||..-.+++.+.|.++.+|.-
T Consensus 292 syd~~ikltdlqgd--------la~el~~~vv----------~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 292 SYDMKIKLTDLQGD--------LAHELPIMVV----------AEHKDKAIQCRWHPQDFSFISSSADKTATLWAL 348 (350)
T ss_pred cccceEEEeecccc--------hhhcCceEEE----------EeccCceEEEEecCccceeeeccCcceEEEecc
Confidence 99999999999754 1122222111 169999999999999999999999999999974
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-26 Score=222.72 Aligned_cols=177 Identities=23% Similarity=0.386 Sum_probs=146.6
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCC-cccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFES-LYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~-~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..+..+|++++|+|+|+++++|+.|++|+|||+.. ..+.. .+ .+|... |++++|+|++ .+
T Consensus 199 l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~--------~l------~gH~~~---v~~~~f~p~g-~~ 260 (456)
T KOG0266|consen 199 LSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLK--------TL------KGHSTY---VTSVAFSPDG-NL 260 (456)
T ss_pred ccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEE--------Ee------cCCCCc---eEEEEecCCC-CE
Confidence 355777899999999999999999999999999944 23333 23 455555 9999999999 69
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
+++|+.| ++|+|||++.+ .+...+.+|...|++++|++++. +|++++.|+.|++||+.++...+.+
T Consensus 261 i~Sgs~D-~tvriWd~~~~------------~~~~~l~~hs~~is~~~f~~d~~-~l~s~s~d~~i~vwd~~~~~~~~~~ 326 (456)
T KOG0266|consen 261 LVSGSDD-GTVRIWDVRTG------------ECVRKLKGHSDGISGLAFSPDGN-LLVSASYDGTIRVWDLETGSKLCLK 326 (456)
T ss_pred EEEecCC-CcEEEEeccCC------------eEEEeeeccCCceEEEEECCCCC-EEEEcCCCccEEEEECCCCceeeee
Confidence 9999998 99999999432 12233488999999999999999 9999999999999999997632234
Q ss_pred eccCCCCc--eeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCcc
Q 037120 251 LSTGSHGT--LNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEV 300 (489)
Q Consensus 251 ~~~~h~~~--v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~ 300 (489)
.+..+... +++++|+|++.++++++.|+.+++||++.+.++..+.+|...
T Consensus 327 ~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~ 378 (456)
T KOG0266|consen 327 LLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNL 378 (456)
T ss_pred cccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCc
Confidence 44455544 999999999999999999999999999999998888887754
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-26 Score=199.83 Aligned_cols=237 Identities=16% Similarity=0.216 Sum_probs=179.4
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
|.|+++.|.++ .|++|+.| ++|+|||+..+ .+..++.||-..|..+++++-.+ ++++++.|+.|+
T Consensus 154 Vr~vavdP~n~-wf~tgs~D-rtikIwDlatg------------~LkltltGhi~~vr~vavS~rHp-YlFs~gedk~VK 218 (460)
T KOG0285|consen 154 VRSVAVDPGNE-WFATGSAD-RTIKIWDLATG------------QLKLTLTGHIETVRGVAVSKRHP-YLFSAGEDKQVK 218 (460)
T ss_pred EEEEeeCCCce-eEEecCCC-ceeEEEEcccC------------eEEEeecchhheeeeeeecccCc-eEEEecCCCeeE
Confidence 99999999975 89999998 99999999432 12334589999999999999999 999999999999
Q ss_pred EEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 238 IWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
.||+...+ .++.+.+|-+.|.|++.+|.-+.|++|+.|.++|+||+|+...+..+.+|... |.++.+.|....
T Consensus 219 CwDLe~nk--vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~----V~~V~~~~~dpq- 291 (460)
T KOG0285|consen 219 CWDLEYNK--VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNP----VASVMCQPTDPQ- 291 (460)
T ss_pred EEechhhh--hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCc----ceeEEeecCCCc-
Confidence 99999877 78888899999999999999999999999999999999998889999999977 888876654433
Q ss_pred eeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcE
Q 037120 318 GTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSI 397 (489)
Q Consensus 318 ~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (489)
+++++.|.+ .+++++..|........ . ...++..+..|. ..
T Consensus 292 -------------------------vit~S~D~t-vrlWDl~agkt~~tlt~------h------kksvral~lhP~-e~ 332 (460)
T KOG0285|consen 292 -------------------------VITGSHDST-VRLWDLRAGKTMITLTH------H------KKSVRALCLHPK-EN 332 (460)
T ss_pred -------------------------eEEecCCce-EEEeeeccCceeEeeec------c------cceeeEEecCCc-hh
Confidence 333333333 12233332221110000 0 001111122222 44
Q ss_pred EEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 398 YAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 398 ~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
.++++|.| .|+-|++..+ +.++.++ +|..-|++++...+ .++++|+++|.|.+|.-
T Consensus 333 ~fASas~d-nik~w~~p~g----------~f~~nls------------gh~~iintl~~nsD-~v~~~G~dng~~~fwdw 388 (460)
T KOG0285|consen 333 LFASASPD-NIKQWKLPEG----------EFLQNLS------------GHNAIINTLSVNSD-GVLVSGGDNGSIMFWDW 388 (460)
T ss_pred hhhccCCc-cceeccCCcc----------chhhccc------------cccceeeeeeeccC-ceEEEcCCceEEEEEec
Confidence 55666655 6899999999 7888888 99999999999854 47899999999999975
Q ss_pred cc
Q 037120 478 KQ 479 (489)
Q Consensus 478 ~~ 479 (489)
|.
T Consensus 389 ks 390 (460)
T KOG0285|consen 389 KS 390 (460)
T ss_pred Cc
Confidence 54
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-25 Score=188.76 Aligned_cols=316 Identities=16% Similarity=0.216 Sum_probs=211.8
Q ss_pred cCCCceeEEEECCC-CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccc--cC-CCCCCceeEEEeeCCCCC
Q 037120 94 FGKPGISALDFDCK-GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHL--LH-IPLPQQLDAVRWNLANQD 169 (489)
Q Consensus 94 ~~~~~V~~~~fs~~-g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~--~h-~~~~~~V~~v~~~~~~~~ 169 (489)
+|..+|+++.+++. |+|+++|+.||.|.|||++........ |....+.... -| ..+.+.|.++.|-|-..+
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s-----~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtG 115 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEAS-----GLIAKHKCIVAKQHENGHKYAISSAIWYPIDTG 115 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhc-----cceeheeeeccccCCccceeeeeeeEEeeecCc
Confidence 45567999999875 899999999999999999874311110 0111111111 12 233445999999999899
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCC--cEEEEEeCCCcEEEEECCCCCcC
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT--SRLIASDTHGVVNIWDRRVGVLP 247 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~ 247 (489)
++.+++-| .+++|||.++. +....|. +. +.|.+-+|+|-.. .++++|..|-.|++.|+.++.
T Consensus 116 mFtssSFD-htlKVWDtnTl--------Q~a~~F~--me---~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs-- 179 (397)
T KOG4283|consen 116 MFTSSSFD-HTLKVWDTNTL--------QEAVDFK--ME---GKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS-- 179 (397)
T ss_pred eeeccccc-ceEEEeecccc--------eeeEEee--cC---ceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc--
Confidence 99999999 99999999432 2222221 12 3777778887543 267788899999999999998
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCC-cccceeecCCccCCCCeeEEEeCCCCcceeeccccce
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGG-RTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSK 325 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~ 325 (489)
+...+.+|.+.|.++.|+|...++++.+. ||.|++||+|.. .+...+..|+..+ .|+ ++ ...
T Consensus 180 ~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~-~p~--------------~~-~n~ 243 (397)
T KOG4283|consen 180 FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKR-PPI--------------LK-TNT 243 (397)
T ss_pred ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCcc-Ccc--------------cc-ccc
Confidence 77888999999999999999998766655 999999999975 5566666665320 111 11 122
Q ss_pred eeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCC
Q 037120 326 IVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSD 405 (489)
Q Consensus 326 ~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d 405 (489)
.+...+.++++..++.+++.++.++.. ++++...|.-+-....+.+-.......+. .. ..+ ...++.--.|
T Consensus 244 ah~gkvngla~tSd~~~l~~~gtd~r~-r~wn~~~G~ntl~~~g~~~~n~~~~~~~~------~~-~~~-s~vfv~~p~~ 314 (397)
T KOG4283|consen 244 AHYGKVNGLAWTSDARYLASCGTDDRI-RVWNMESGRNTLREFGPIIHNQTTSFAVH------IQ-SMD-SDVFVLFPND 314 (397)
T ss_pred cccceeeeeeecccchhhhhccCccce-EEeecccCcccccccccccccccccceEE------Ee-ecc-cceEEEEecC
Confidence 345567778888888888888777762 12333333222111110000000000000 00 111 2233334466
Q ss_pred CcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 406 HGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 406 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
+.+.++++..+ +.+..+. +|-..|++.++-|+-...-+|..|+.+..|+.
T Consensus 315 ~~lall~~~sg----------s~ir~l~------------~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 315 GSLALLNLLEG----------SFVRRLS------------THLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred CeEEEEEccCc----------eEEEeee------------cccceeeEEeecCchhhhhccccCCccccccc
Confidence 88899998888 7777777 88888999999999999999999999999976
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=187.62 Aligned_cols=247 Identities=13% Similarity=0.178 Sum_probs=181.5
Q ss_pred eEEEECCC-CcEEEEEe-------cCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 100 SALDFDCK-GIYLVSAT-------RSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 100 ~~~~fs~~-g~~la~g~-------~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
.++.|||- .++||.++ ..|.+.|.++....-+.. ..+....-++..|+|++...+++
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e---------------~~s~d~~D~LfdV~Wse~~e~~~ 76 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE---------------CQSYDTEDGLFDVAWSENHENQV 76 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE---------------EEeeecccceeEeeecCCCcceE
Confidence 46678874 23444332 268889988864211110 01111112277899999999999
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++.| |++++||+... .. +... +.+|...|.++.|++.....++++|-|++|++||...+. .+++
T Consensus 77 ~~a~GD-GSLrl~d~~~~-s~------Pi~~----~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~--Sv~T 142 (311)
T KOG0277|consen 77 IAASGD-GSLRLFDLTMP-SK------PIHK----FKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN--SVQT 142 (311)
T ss_pred EEEecC-ceEEEeccCCC-Cc------chhH----HHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc--ceEe
Confidence 999888 99999997322 12 2333 388999999999999888789999999999999998766 6778
Q ss_pred ccCCCCceeEEEEeecC-CEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccc
Q 037120 252 STGSHGTLNSIQLHAEN-QIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQE 330 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~-~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~ 330 (489)
+.+|..-|...+|+|.. +.+++++.|+++++||++.......++.|... |.++.|+
T Consensus 143 f~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~E----il~cdw~------------------- 199 (311)
T KOG0277|consen 143 FNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSE----ILCCDWS------------------- 199 (311)
T ss_pred ecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccce----eEeeccc-------------------
Confidence 99999999999999965 45566677999999999975433335555533 3333222
Q ss_pred eeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 331 IHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 331 i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
. -+ ..++++|+.|+.||+
T Consensus 200 -------k-------------------------------------y~------------------~~vl~Tg~vd~~vr~ 217 (311)
T KOG0277|consen 200 -------K-------------------------------------YN------------------HNVLATGGVDNLVRG 217 (311)
T ss_pred -------c-------------------------------------cC------------------CcEEEecCCCceEEE
Confidence 1 11 567899999999999
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCC-CeEEeccCcceeEEEeccccc
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLN-NTIVAGTKNSSLLVVSQKQQC 481 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~-~~i~sgs~dg~i~v~~~~~~~ 481 (489)
||+..-. ..+.++. +|.-.|..|+|+|.. ..|||++.|-++++|..+++.
T Consensus 218 wDir~~r---------~pl~eL~------------gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d 268 (311)
T KOG0277|consen 218 WDIRNLR---------TPLFELN------------GHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD 268 (311)
T ss_pred Eehhhcc---------ccceeec------------CCceEEEEEecCcchhhHhhhccccceEEecccccch
Confidence 9998661 3344555 999999999999987 599999999999999887554
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.1e-25 Score=185.36 Aligned_cols=278 Identities=15% Similarity=0.172 Sum_probs=199.6
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..+...|.+++|+.+|..||+|+.|+++.||+++...... .....+|... |-.++|.|..+.++
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~------------~~~~~gh~~s---vdql~w~~~~~d~~ 80 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK------------ELVYRGHTDS---VDQLCWDPKHPDLF 80 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhh------------hhcccCCCcc---hhhheeCCCCCcce
Confidence 44455679999999999999999999999999999853332 2234677777 66699999999999
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++.| .+|++||++..+.. ..+. .+..=.-+.|+|+|+ +++.++.|..|.+.|.++.+ ....
T Consensus 81 atas~d-k~ir~wd~r~~k~~--~~i~-----------~~~eni~i~wsp~g~-~~~~~~kdD~it~id~r~~~--~~~~ 143 (313)
T KOG1407|consen 81 ATASGD-KTIRIWDIRSGKCT--ARIE-----------TKGENINITWSPDGE-YIAVGNKDDRITFIDARTYK--IVNE 143 (313)
T ss_pred EEecCC-ceEEEEEeccCcEE--EEee-----------ccCcceEEEEcCCCC-EEEEecCcccEEEEEecccc--eeeh
Confidence 999988 99999999654321 1111 112334578999999 99999999999999999865 2322
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
......++-++|+-++..++.....|+|.|......+.+..++.|... ..++.|+|+|++++.
T Consensus 144 -~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~sn----CicI~f~p~GryfA~------------ 206 (313)
T KOG1407|consen 144 -EQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSN----CICIEFDPDGRYFAT------------ 206 (313)
T ss_pred -hcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcc----eEEEEECCCCceEee------------
Confidence 233567888999988888888888999999999998889999998855 666666666666653
Q ss_pred eEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEE
Q 037120 332 HSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLL 411 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vw 411 (489)
++.|.-. .++++.. +.|.. ++ +-...++|+++|+-+ +.+|++||+|..|-|=
T Consensus 207 --------------GsADAlv-SLWD~~E-----LiC~R-~i------sRldwpVRTlSFS~d-g~~lASaSEDh~IDIA 258 (313)
T KOG1407|consen 207 --------------GSADALV-SLWDVDE-----LICER-CI------SRLDWPVRTLSFSHD-GRMLASASEDHFIDIA 258 (313)
T ss_pred --------------cccccee-eccChhH-----hhhhe-ee------ccccCceEEEEeccC-cceeeccCccceEEeE
Confidence 3322210 0111100 00000 00 001133455555554 7899999999999999
Q ss_pred eccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCc
Q 037120 412 DFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKN 469 (489)
Q Consensus 412 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~d 469 (489)
++.++ ..+.++ ++.++-+.|||||....||-+..|
T Consensus 259 ~vetG----------d~~~eI-------------~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 259 EVETG----------DRVWEI-------------PCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred ecccC----------CeEEEe-------------eccCCceeEEecCCCceeeEEecC
Confidence 99999 666555 488999999999999988766543
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=218.16 Aligned_cols=240 Identities=20% Similarity=0.270 Sum_probs=199.6
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|..+|.+++|..-+.+|++|+.|.+++|||..++.|... + .+|... |.++...+. .+
T Consensus 245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~--------l------~gh~st---v~~~~~~~~---~~ 304 (537)
T KOG0274|consen 245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS--------L------QGHTSS---VRCLTIDPF---LL 304 (537)
T ss_pred ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE--------e------cCCCce---EEEEEccCc---eE
Confidence 677888999999998889999999999999999999887763 2 456666 888877654 78
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++|+.| .+|++|++.. ..+...+.+|..+|+++... +. ++++|+.|++|++||+++++ +++.
T Consensus 305 ~sgs~D-~tVkVW~v~n------------~~~l~l~~~h~~~V~~v~~~--~~-~lvsgs~d~~v~VW~~~~~~--cl~s 366 (537)
T KOG0274|consen 305 VSGSRD-NTVKVWDVTN------------GACLNLLRGHTGPVNCVQLD--EP-LLVSGSYDGTVKVWDPRTGK--CLKS 366 (537)
T ss_pred eeccCC-ceEEEEeccC------------cceEEEeccccccEEEEEec--CC-EEEEEecCceEEEEEhhhce--eeee
Confidence 888888 9999999941 12333446699999999987 66 99999999999999999887 9999
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-cccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccc
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGG-RTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQE 330 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~ 330 (489)
+.+|...|.++.+.+. ..+++|+.|++|++||+++. +++.++.+|... +..+.
T Consensus 367 l~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~----v~~l~--------------------- 420 (537)
T KOG0274|consen 367 LSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL----VSSLL--------------------- 420 (537)
T ss_pred ecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc----ccccc---------------------
Confidence 9999999999988766 88999999999999999999 889999888755 21110
Q ss_pred eeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 331 IHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 331 i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
.. +.++++++.|+.|++
T Consensus 421 --------------------------------------------~~-------------------~~~Lvs~~aD~~Ik~ 437 (537)
T KOG0274|consen 421 --------------------------------------------LR-------------------DNFLVSSSADGTIKL 437 (537)
T ss_pred --------------------------------------------cc-------------------cceeEeccccccEEE
Confidence 01 678999999999999
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCccc-CCCceEEEEeeCCCCeEEeccCcceeEEEecccccc
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVP-LSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQCT 482 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~~ 482 (489)
||...+ +.+..++ + |...|.++++. ...+++++.||.+.+|.-+....
T Consensus 438 WD~~~~----------~~~~~~~------------~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~ 486 (537)
T KOG0274|consen 438 WDAEEG----------ECLRTLE------------GRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTL 486 (537)
T ss_pred eecccC----------ceeeeec------------cCCcccEEEeecC--cceEEEEecCCeeEEEecccCch
Confidence 999999 8888888 6 67888888886 67899999999999996554443
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-25 Score=189.32 Aligned_cols=261 Identities=14% Similarity=0.199 Sum_probs=180.2
Q ss_pred cccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCC
Q 037120 144 DQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVN 223 (489)
Q Consensus 144 ~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 223 (489)
+.....+|.++ |..+.|+|++. +|++|+.| ..|.+|++...... . ..+.+|+++|..+.|.+++
T Consensus 39 p~m~l~gh~ge---I~~~~F~P~gs-~~aSgG~D-r~I~LWnv~gdceN-------~----~~lkgHsgAVM~l~~~~d~ 102 (338)
T KOG0265|consen 39 PIMLLPGHKGE---IYTIKFHPDGS-CFASGGSD-RAIVLWNVYGDCEN-------F----WVLKGHSGAVMELHGMRDG 102 (338)
T ss_pred hhhhcCCCcce---EEEEEECCCCC-eEeecCCc-ceEEEEeccccccc-------e----eeeccccceeEeeeeccCC
Confidence 33445678888 89999999886 88888888 99999998322111 1 2237999999999999999
Q ss_pred CcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcccceeecCCccCC
Q 037120 224 TSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFHNHKEVCH 302 (489)
Q Consensus 224 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~~ 302 (489)
. .+++++.|.+|+.||+++++ +.+....|..-|+++.-+.-|..+++.+. |++++|||+|+..++++++. +-.
T Consensus 103 s-~i~S~gtDk~v~~wD~~tG~--~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyq-- 176 (338)
T KOG0265|consen 103 S-HILSCGTDKTVRGWDAETGK--RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQ-- 176 (338)
T ss_pred C-EEEEecCCceEEEEecccce--eeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc-cee--
Confidence 9 99999999999999999998 77788899999999996666776666555 99999999999877877754 222
Q ss_pred CCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCcccc
Q 037120 303 LPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSAD 382 (489)
Q Consensus 303 ~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (489)
++++.|..++..+.+......+ . .+++-. ....-+..||...+..+ ..+.
T Consensus 177 --ltAv~f~d~s~qv~sggIdn~i---k----vWd~r~------------~d~~~~lsGh~DtIt~l--sls~------- 226 (338)
T KOG0265|consen 177 --LTAVGFKDTSDQVISGGIDNDI---K----VWDLRK------------NDGLYTLSGHADTITGL--SLSR------- 226 (338)
T ss_pred --EEEEEecccccceeeccccCce---e----eecccc------------CcceEEeecccCceeeE--Eecc-------
Confidence 7888887766554331111000 0 112200 01222333433332222 1112
Q ss_pred ccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCe
Q 037120 383 QLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNT 462 (489)
Q Consensus 383 ~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~ 462 (489)
.+.++.+-+.|+++++||+...-++ .+.+..+... .-..+.....++|+|++..
T Consensus 227 ------------~gs~llsnsMd~tvrvwd~rp~~p~------~R~v~if~g~--------~hnfeknlL~cswsp~~~~ 280 (338)
T KOG0265|consen 227 ------------YGSFLLSNSMDNTVRVWDVRPFAPS------QRCVKIFQGH--------IHNFEKNLLKCSWSPNGTK 280 (338)
T ss_pred ------------CCCccccccccceEEEEEecccCCC------CceEEEeecc--------hhhhhhhcceeeccCCCCc
Confidence 2778889999999999999866111 1223333300 0012345688999999999
Q ss_pred EEeccCcceeEEEecccccc
Q 037120 463 IVAGTKNSSLLVVSQKQQCT 482 (489)
Q Consensus 463 i~sgs~dg~i~v~~~~~~~~ 482 (489)
+.+|+.|..+.+|....+.+
T Consensus 281 i~ags~dr~vyvwd~~~r~~ 300 (338)
T KOG0265|consen 281 ITAGSADRFVYVWDTTSRRI 300 (338)
T ss_pred cccccccceEEEeecccccE
Confidence 99999999999998766443
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-25 Score=210.00 Aligned_cols=289 Identities=12% Similarity=0.147 Sum_probs=214.4
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|+..|++++||.+...+++|+ .+.|+||+..+.+|.... ... . +.+..|-|.+. .+
T Consensus 369 ~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi--------~~~--y---------~l~~~Fvpgd~-~I 427 (888)
T KOG0306|consen 369 IGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTI--------TCG--Y---------ILASKFVPGDR-YI 427 (888)
T ss_pred eccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEe--------ccc--c---------EEEEEecCCCc-eE
Confidence 566778899999999998888876 568999999998887732 111 3 88899999875 67
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCc-----
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVL----- 246 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~----- 246 (489)
+.|... |.+.+||+... ..+.. ...|.+.|++++..||+. .++|||.|.+|++||...-..
T Consensus 428 v~G~k~-Gel~vfdlaS~-----~l~Et-------i~AHdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~~gt~ 493 (888)
T KOG0306|consen 428 VLGTKN-GELQVFDLASA-----SLVET-------IRAHDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSVPGTQ 493 (888)
T ss_pred EEeccC-CceEEEEeehh-----hhhhh-------hhccccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEeccCccc
Confidence 777777 99999999322 12111 156999999999999999 999999999999999753211
Q ss_pred -Ccee----eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeecc
Q 037120 247 -PSLE----LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLK 321 (489)
Q Consensus 247 -~~~~----~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~ 321 (489)
..+. ....-+..|.|+.++|||++|+++=-|.+|++|=+.+.+-.-.+.+|.-+ |.++..+||...+.+..
T Consensus 494 ~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLP----V~smDIS~DSklivTgS 569 (888)
T KOG0306|consen 494 KKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLP----VLSMDISPDSKLIVTGS 569 (888)
T ss_pred ceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccc----eeEEeccCCcCeEEecc
Confidence 0111 11133578999999999999999888999999999998888888888854 88888888777765432
Q ss_pred ccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEe
Q 037120 322 AQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVG 401 (489)
Q Consensus 322 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 401 (489)
.. ..-.|+.+.|..-.+ -+-+|...+. .+-|.|. ..++.+
T Consensus 570 AD---KnVKiWGLdFGDCHK----------------S~fAHdDSvm--------------------~V~F~P~-~~~FFt 609 (888)
T KOG0306|consen 570 AD---KNVKIWGLDFGDCHK----------------SFFAHDDSVM--------------------SVQFLPK-THLFFT 609 (888)
T ss_pred CC---CceEEeccccchhhh----------------hhhcccCcee--------------------EEEEccc-ceeEEE
Confidence 22 222344444411110 0111111111 1223332 677888
Q ss_pred ecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccccc
Q 037120 402 SSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQC 481 (489)
Q Consensus 402 gs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~ 481 (489)
+|.|+.|+-||-..- +.++.+. +|...|.|+|..|+|.+++|+|.|.+|++|..-++-
T Consensus 610 ~gKD~kvKqWDg~kF----------e~iq~L~------------~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 610 CGKDGKVKQWDGEKF----------EEIQKLD------------GHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEI 667 (888)
T ss_pred ecCcceEEeechhhh----------hhheeec------------cchheeeeeEEcCCCCeEEeccCCceeEeeeccCcc
Confidence 899999999999888 8888988 999999999999999999999999999999876643
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-26 Score=204.95 Aligned_cols=251 Identities=15% Similarity=0.209 Sum_probs=180.6
Q ss_pred cccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEE
Q 037120 148 HLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRL 227 (489)
Q Consensus 148 ~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 227 (489)
+.+|+.. |+++.|.|....+|++++.| +.|+||++... ..++.++.+|..+|.+++|+.+|. .|
T Consensus 210 ~~gH~kg---vsai~~fp~~~hLlLS~gmD-~~vklW~vy~~-----------~~~lrtf~gH~k~Vrd~~~s~~g~-~f 273 (503)
T KOG0282|consen 210 LSGHTKG---VSAIQWFPKKGHLLLSGGMD-GLVKLWNVYDD-----------RRCLRTFKGHRKPVRDASFNNCGT-SF 273 (503)
T ss_pred ccCCccc---cchhhhccceeeEEEecCCC-ceEEEEEEecC-----------cceehhhhcchhhhhhhhccccCC-ee
Confidence 4677777 99999999666799999999 99999999431 223445599999999999999999 99
Q ss_pred EEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecC-CEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCee
Q 037120 228 IASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAEN-QIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLT 306 (489)
Q Consensus 228 ~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 306 (489)
+|++.|+.|++||+++|+ ++..+. -...++|+.|+|++ +.+++|+.|+.|+.||+|+++.++.+..|-+. |.
T Consensus 274 LS~sfD~~lKlwDtETG~--~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~----i~ 346 (503)
T KOG0282|consen 274 LSASFDRFLKLWDTETGQ--VLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGA----IL 346 (503)
T ss_pred eeeecceeeeeeccccce--EEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhh----ee
Confidence 999999999999999998 665543 24567899999999 67778888999999999999999999888877 88
Q ss_pred EEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCC
Q 037120 307 SLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHL 386 (489)
Q Consensus 307 ~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (489)
.+.|-++|+.+.+.. +...+.++..+-. ..+. +........++ +
T Consensus 347 ~i~F~~~g~rFissS-----------------Ddks~riWe~~~~--v~ik-~i~~~~~hsmP--~-------------- 390 (503)
T KOG0282|consen 347 DITFVDEGRRFISSS-----------------DDKSVRIWENRIP--VPIK-NIADPEMHTMP--C-------------- 390 (503)
T ss_pred eeEEccCCceEeeec-----------------cCccEEEEEcCCC--ccch-hhcchhhccCc--c--------------
Confidence 888888887765421 1111111111100 0000 00000011111 1
Q ss_pred CcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCC--CceEEEEeeCCCCeEE
Q 037120 387 RKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLS--EGVTACVTHPLNNTIV 464 (489)
Q Consensus 387 ~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~va~~p~~~~i~ 464 (489)
+.-.|. +.++++-+.|+.|.++.+... .+.....+|.||. +.-..|.|+|+|.+|+
T Consensus 391 --~~~~P~-~~~~~aQs~dN~i~ifs~~~~-------------------~r~nkkK~feGh~vaGys~~v~fSpDG~~l~ 448 (503)
T KOG0282|consen 391 --LTLHPN-GKWFAAQSMDNYIAIFSTVPP-------------------FRLNKKKRFEGHSVAGYSCQVDFSPDGRTLC 448 (503)
T ss_pred --eecCCC-CCeehhhccCceEEEEecccc-------------------cccCHhhhhcceeccCceeeEEEcCCCCeEE
Confidence 111122 677888899999999986544 0111122333774 5678899999999999
Q ss_pred eccCcceeEEEeccc
Q 037120 465 AGTKNSSLLVVSQKQ 479 (489)
Q Consensus 465 sgs~dg~i~v~~~~~ 479 (489)
+|+.||.+++|.-|.
T Consensus 449 SGdsdG~v~~wdwkt 463 (503)
T KOG0282|consen 449 SGDSDGKVNFWDWKT 463 (503)
T ss_pred eecCCccEEEeechh
Confidence 999999999997654
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-25 Score=214.93 Aligned_cols=260 Identities=11% Similarity=0.193 Sum_probs=188.2
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
|..++|+|..+.+| ++-.. |.|++||.+- .+++..|.+|.++|..++|+|+.+ +|++|+.|-.|+
T Consensus 12 vKglsFHP~rPwIL-tslHs-G~IQlWDYRM------------~tli~rFdeHdGpVRgv~FH~~qp-lFVSGGDDykIk 76 (1202)
T KOG0292|consen 12 VKGLSFHPKRPWIL-TSLHS-GVIQLWDYRM------------GTLIDRFDEHDGPVRGVDFHPTQP-LFVSGGDDYKIK 76 (1202)
T ss_pred ccceecCCCCCEEE-EeecC-ceeeeehhhh------------hhHHhhhhccCCccceeeecCCCC-eEEecCCccEEE
Confidence 77799999987444 45444 9999999932 223344589999999999999999 999999999999
Q ss_pred EEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 238 IWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
+|+..+.+ |+.++.+|-+.|..+.|++.-+.+++++.|.+|+||+..+++++..+.+|... |.|.+|+|....+
T Consensus 77 VWnYk~rr--clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHY----VMcAqFhptEDlI 150 (1202)
T KOG0292|consen 77 VWNYKTRR--CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHY----VMCAQFHPTEDLI 150 (1202)
T ss_pred EEecccce--ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceE----EEeeccCCccceE
Confidence 99999866 88888899999999999999999999999999999999999999999999988 9999999988777
Q ss_pred eeccccceeeccceeEEE---eCCCC--CeEEEEEecCC-c---e-EEEEeeccceeeecCCCCCCcCCCCccccccCCC
Q 037120 318 GTLKAQSKIVSQEIHSID---LDPSC--SYQLAFHLDDG-W---S-GVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLR 387 (489)
Q Consensus 318 ~~~~~~~~~~~~~i~~~~---~~p~~--~~~~~~~~~~~-w---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (489)
++......+.-..|..+. ..|.+ ..+.....+.. . . .+-.+..||- +.+.
T Consensus 151 VSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHD--------------------RGVN 210 (1202)
T KOG0292|consen 151 VSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHD--------------------RGVN 210 (1202)
T ss_pred EEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccc--------------------cccc
Confidence 653322222211111111 11110 00000000000 0 0 0111112221 2223
Q ss_pred cceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEecc
Q 037120 388 KPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGT 467 (489)
Q Consensus 388 ~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs 467 (489)
..+|.|+ -.++++|++|..|++|.++..+.. ++.... ||.+.|.++-|||..+.|+|.|
T Consensus 211 waAfhpT-lpliVSG~DDRqVKlWrmnetKaW--------EvDtcr------------gH~nnVssvlfhp~q~lIlSns 269 (1202)
T KOG0292|consen 211 WAAFHPT-LPLIVSGADDRQVKLWRMNETKAW--------EVDTCR------------GHYNNVSSVLFHPHQDLILSNS 269 (1202)
T ss_pred eEEecCC-cceEEecCCcceeeEEEeccccce--------eehhhh------------cccCCcceEEecCccceeEecC
Confidence 3334443 468899999999999999866211 222333 9999999999999999999999
Q ss_pred CcceeEEEeccc
Q 037120 468 KNSSLLVVSQKQ 479 (489)
Q Consensus 468 ~dg~i~v~~~~~ 479 (489)
+|++|+||.-.+
T Consensus 270 EDksirVwDm~k 281 (1202)
T KOG0292|consen 270 EDKSIRVWDMTK 281 (1202)
T ss_pred CCccEEEEeccc
Confidence 999999996544
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-23 Score=181.11 Aligned_cols=312 Identities=11% Similarity=0.127 Sum_probs=202.7
Q ss_pred ccccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 91 RRSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
.+..|...|++++|+.||++||+++.|++|+||++.......-. .+.. ....++ -+.++|.||...+
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr------~~R~----nve~dh---pT~V~FapDc~s~ 147 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHR------CIRQ----NVEYDH---PTRVVFAPDCKSV 147 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhh------Hhhc----cccCCC---ceEEEECCCcceE
Confidence 36678888999999999999999999999999999872211100 0000 001112 5669999999878
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeece-eeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRR-SVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
+++.-.. .++++|.+....... ..+.... .-.+--..|...|-++-.-..+. +|++++.|..|.+||++ ++ .+
T Consensus 148 vv~~~~g-~~l~vyk~~K~~dG~-~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k-~imsas~dt~i~lw~lk-Gq--~L 221 (420)
T KOG2096|consen 148 VVSVKRG-NKLCVYKLVKKTDGS-GSHHFVHIDNLEFERKHQVDIINIGIAGNAK-YIMSASLDTKICLWDLK-GQ--LL 221 (420)
T ss_pred EEEEccC-CEEEEEEeeecccCC-CCcccccccccccchhcccceEEEeecCCce-EEEEecCCCcEEEEecC-Cc--ee
Confidence 7777755 899999985332111 1111000 00000134667777777766666 99999999999999999 55 45
Q ss_pred eeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeecc
Q 037120 250 ELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQ 329 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~ 329 (489)
..+......-+..+.+|+|+++++++..-.|++|.+--++. -+++. |. -..+.+.++.
T Consensus 222 ~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kd-G~fqe--------v~-------------rvf~LkGH~s 279 (420)
T KOG2096|consen 222 QSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKD-GTFQE--------VK-------------RVFSLKGHQS 279 (420)
T ss_pred eeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccC-cchhh--------hh-------------hhheeccchh
Confidence 45544445566789999999999999988899998743221 00000 00 0122335556
Q ss_pred ceeEEEeCCCCCeEEEEEecCCceEEEEee----cc---ceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEee
Q 037120 330 EIHSIDLDPSCSYQLAFHLDDGWSGVLDVY----NS---RVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGS 402 (489)
Q Consensus 330 ~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 402 (489)
.|.+++|++++.+.++.+.|+.|. ++++. .+ ...+.... +..+.. .....+..+|.|..++++
T Consensus 280 aV~~~aFsn~S~r~vtvSkDG~wr-iwdtdVrY~~~qDpk~Lk~g~~---pl~aag-----~~p~RL~lsP~g~~lA~s- 349 (420)
T KOG2096|consen 280 AVLAAAFSNSSTRAVTVSKDGKWR-IWDTDVRYEAGQDPKILKEGSA---PLHAAG-----SEPVRLELSPSGDSLAVS- 349 (420)
T ss_pred heeeeeeCCCcceeEEEecCCcEE-EeeccceEecCCCchHhhcCCc---chhhcC-----CCceEEEeCCCCcEEEee-
Confidence 667777777777888888888764 33221 11 11111111 111100 112356778888888877
Q ss_pred cCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 403 SSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 403 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
....|+++...++ +....++. -|.+.|.+++|+|+|.++|++|+ ..+.|+-
T Consensus 350 -~gs~l~~~~se~g----------~~~~~~e~-----------~h~~~Is~is~~~~g~~~atcGd-r~vrv~~ 400 (420)
T KOG2096|consen 350 -FGSDLKVFASEDG----------KDYPELED-----------IHSTTISSISYSSDGKYIATCGD-RYVRVIR 400 (420)
T ss_pred -cCCceEEEEcccC----------ccchhHHH-----------hhcCceeeEEecCCCcEEeeecc-eeeeeec
Confidence 5557999999888 66766662 59999999999999999999987 5666653
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=227.69 Aligned_cols=280 Identities=15% Similarity=0.199 Sum_probs=182.5
Q ss_pred CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCcee
Q 037120 117 SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEV 196 (489)
Q Consensus 117 dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~ 196 (489)
+|.+++|+.......... .......|... |.+++|+|++. ++++|+.| ++|+|||+..........
T Consensus 457 ~gl~~~~~~~~~~~~~~~---------~~~~~~~~~~~---V~~i~fs~dg~-~latgg~D-~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADL---------KQGDLLNSSNL---VCAIGFDRDGE-FFATAGVN-KKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEee---------ccccccCCCCc---EEEEEECCCCC-EEEEEeCC-CEEEEEECCccccccccc
Confidence 677888888764432210 01112335555 99999999986 78888888 999999984321110000
Q ss_pred eeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEee-cCCEEEEEe
Q 037120 197 LKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHA-ENQIIFAAG 275 (489)
Q Consensus 197 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~~~~ 275 (489)
..+.. .+. +...|.+++|++....+|++++.||+|++||+.+++ .+..+.+|...|++++|+| ++.+|++|+
T Consensus 523 ~~~~~----~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~--~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs 595 (793)
T PLN00181 523 HYPVV----ELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQ--LVTEMKEHEKRVWSIDYSSADPTLLASGS 595 (793)
T ss_pred ccceE----Eec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCe--EEEEecCCCCCEEEEEEcCCCCCEEEEEc
Confidence 00011 112 345899999998755599999999999999999866 5667779999999999997 788999999
Q ss_pred CCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCC-CCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceE
Q 037120 276 KHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLAS-MLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSG 354 (489)
Q Consensus 276 ~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~ 354 (489)
.||+|++||++++..+..+..+ .. +.++.|++ ++..++ +++.++. ..
T Consensus 596 ~Dg~v~iWd~~~~~~~~~~~~~-~~----v~~v~~~~~~g~~la--------------------------tgs~dg~-I~ 643 (793)
T PLN00181 596 DDGSVKLWSINQGVSIGTIKTK-AN----ICCVQFPSESGRSLA--------------------------FGSADHK-VY 643 (793)
T ss_pred CCCEEEEEECCCCcEEEEEecC-CC----eEEEEEeCCCCCEEE--------------------------EEeCCCe-EE
Confidence 9999999999998877776643 33 67777643 344333 2222221 11
Q ss_pred EEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhH
Q 037120 355 VLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSE 434 (489)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 434 (489)
+++...+.... . .+... ...+..+.|. .+.++++++.|+.|+|||+....... ....+..+.
T Consensus 644 iwD~~~~~~~~-~----~~~~h------~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~~~~----~~~~l~~~~- 705 (793)
T PLN00181 644 YYDLRNPKLPL-C----TMIGH------SKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSISGI----NETPLHSFM- 705 (793)
T ss_pred EEECCCCCccc-e----EecCC------CCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCcccc----CCcceEEEc-
Confidence 22222111000 0 00000 0011123333 25578899999999999997541000 002233444
Q ss_pred hhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecc
Q 037120 435 RTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 435 ~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~ 478 (489)
+|...+++++|+|++.+||+|+.||.|.||...
T Consensus 706 -----------gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~ 738 (793)
T PLN00181 706 -----------GHTNVKNFVGLSVSDGYIATGSETNEVFVYHKA 738 (793)
T ss_pred -----------CCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECC
Confidence 899999999999999999999999999999754
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-25 Score=208.10 Aligned_cols=242 Identities=17% Similarity=0.249 Sum_probs=190.0
Q ss_pred EEEEC-CCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCC
Q 037120 101 ALDFD-CKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSN 179 (489)
Q Consensus 101 ~~~fs-~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g 179 (489)
++..+ |.++||.+|+.||.|++|+..........+ ....++.|..| |..+....++. .|++++.| -
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~--~~asme~HsDW---------VNDiiL~~~~~-tlIS~SsD-t 95 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP--YIASMEHHSDW---------VNDIILCGNGK-TLISASSD-T 95 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccc--hhhhhhhhHhH---------HhhHHhhcCCC-ceEEecCC-c
Confidence 44444 457789999999999999998744432211 11256667777 88888877775 66677777 9
Q ss_pred EEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEE-ecCCCcEEEEEeCCCcEEEEECCCCCcC--------cee
Q 037120 180 VVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAF-SAVNTSRLIASDTHGVVNIWDRRVGVLP--------SLE 250 (489)
Q Consensus 180 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~l~s~s~dg~i~iwd~~~~~~~--------~~~ 250 (489)
+|++|+..... ..+..++..|.+-|.+++. -++.. ++++||-|+.|.+||++++... ...
T Consensus 96 TVK~W~~~~~~----------~~c~stir~H~DYVkcla~~ak~~~-lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~ 164 (735)
T KOG0308|consen 96 TVKVWNAHKDN----------TFCMSTIRTHKDYVKCLAYIAKNNE-LVASGGLDRKIFLWDINTGTATLVASFNNVTVN 164 (735)
T ss_pred eEEEeecccCc----------chhHhhhhcccchheeeeecccCce-eEEecCCCccEEEEEccCcchhhhhhccccccc
Confidence 99999994321 1122334679999999999 55555 9999999999999999976321 111
Q ss_pred ecc-CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeecc
Q 037120 251 LST-GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQ 329 (489)
Q Consensus 251 ~~~-~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~ 329 (489)
... ++..+|++++.+++|..+++||..+.|++||.++.+.+..+.+|... |..+..++|
T Consensus 165 sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdN----Vr~ll~~dD---------------- 224 (735)
T KOG0308|consen 165 SLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDN----VRVLLVNDD---------------- 224 (735)
T ss_pred cCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccc----eEEEEEcCC----------------
Confidence 222 78899999999999999999999999999999999998889999877 666543322
Q ss_pred ceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEE
Q 037120 330 EIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIH 409 (489)
Q Consensus 330 ~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~ 409 (489)
|..++++|.||+|+
T Consensus 225 ------------------------------------------------------------------Gt~~ls~sSDgtIr 238 (735)
T KOG0308|consen 225 ------------------------------------------------------------------GTRLLSASSDGTIR 238 (735)
T ss_pred ------------------------------------------------------------------CCeEeecCCCceEE
Confidence 55677899999999
Q ss_pred EEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEE
Q 037120 410 LLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLV 474 (489)
Q Consensus 410 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v 474 (489)
+||+... +++..+. -|.+.|.++..+|+-..+.+|+.||.|..
T Consensus 239 lWdLgqQ----------rCl~T~~------------vH~e~VWaL~~~~sf~~vYsG~rd~~i~~ 281 (735)
T KOG0308|consen 239 LWDLGQQ----------RCLATYI------------VHKEGVWALQSSPSFTHVYSGGRDGNIYR 281 (735)
T ss_pred eeecccc----------ceeeeEE------------eccCceEEEeeCCCcceEEecCCCCcEEe
Confidence 9999988 8888777 89999999999999999999999999987
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=190.89 Aligned_cols=203 Identities=17% Similarity=0.234 Sum_probs=150.4
Q ss_pred cccCCCceeEEEECCCC--cEEEEEecCCeEEEEeCCCcccccCCCCC--CCCCcccccccccCCCCCCceeEEEeeCCC
Q 037120 92 RSFGKPGISALDFDCKG--IYLVSATRSGCLTVHDFESLYYQCNGTLP--GVGLKEDQSKHLLHIPLPQQLDAVRWNLAN 167 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g--~~la~g~~dg~i~vwd~~~~~~~~~~~~~--~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~ 167 (489)
..++..+|+.+.-++-| .+.|+=+..|.|+||++...-....++.. ......+...+.+|...+++ ++|+|-.
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~---LdWSp~~ 223 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYG---LDWSPIK 223 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCcccee---eeccccc
Confidence 34455667777777665 45666677999999998763221111110 00134555566789999888 9999977
Q ss_pred CCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCc-
Q 037120 168 QDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVL- 246 (489)
Q Consensus 168 ~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~- 246 (489)
...|++|.-- +.|++|....+.-. +. . .++.+|+..|.+++|+|...++|++||.||+|+|||+|.+.+
T Consensus 224 ~g~LlsGDc~-~~I~lw~~~~g~W~----vd-~----~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~ 293 (440)
T KOG0302|consen 224 TGRLLSGDCV-KGIHLWEPSTGSWK----VD-Q----RPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK 293 (440)
T ss_pred ccccccCccc-cceEeeeeccCcee----ec-C----ccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc
Confidence 7778888766 89999999543211 11 1 124789999999999999999999999999999999999843
Q ss_pred CceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc---cceeecCCccCCCCeeEEEeCC
Q 037120 247 PSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT---SAPFHNHKEVCHLPLTSLKLAS 312 (489)
Q Consensus 247 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~---~~~~~~~~~~~~~~v~~l~~~~ 312 (489)
+++ ..++|.+.|+.|.|+..-.+|++|+.||+++|||+|+.+. +..|+-|..+ |+++.|+|
T Consensus 294 ~~~-~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p----ItsieW~p 357 (440)
T KOG0302|consen 294 AAV-STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAP----ITSIEWHP 357 (440)
T ss_pred cee-EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCC----eeEEEecc
Confidence 466 3479999999999999999999999999999999998543 5566666644 66666655
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=179.96 Aligned_cols=257 Identities=11% Similarity=0.095 Sum_probs=194.3
Q ss_pred CCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeC-CCCCEEEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNL-ANQDEVAC 173 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~-~~~~~l~s 173 (489)
|+.-|-.+..+-.|+.|||++.|++|+||....... .....++.||.++ |..++|.. .-..+|++
T Consensus 10 H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~-----------s~ll~~L~Gh~GP---Vwqv~wahPk~G~iLAS 75 (299)
T KOG1332|consen 10 HEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ-----------SKLLAELTGHSGP---VWKVAWAHPKFGTILAS 75 (299)
T ss_pred hhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC-----------ceeeeEecCCCCC---eeEEeecccccCcEeeE
Confidence 444567777788899999999999999999987322 1233456889888 66699964 43459999
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCc-EEEEEeCCCcEEEEECCCC-CcCceee
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTS-RLIASDTHGVVNIWDRRVG-VLPSLEL 251 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~s~dg~i~iwd~~~~-~~~~~~~ 251 (489)
++.| |.|.||.-..+ .......+ ..|...|++++|-|.+.. .|++++.||.|.|.+.+.. .....++
T Consensus 76 csYD-gkVIiWke~~g------~w~k~~e~----~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki 144 (299)
T KOG1332|consen 76 CSYD-GKVIIWKEENG------RWTKAYEH----AAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKI 144 (299)
T ss_pred eecC-ceEEEEecCCC------chhhhhhh----hhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhh
Confidence 9999 99999997433 12222222 779999999999997643 6788889999999998876 3334445
Q ss_pred ccCCCCceeEEEEeec---C-----------CEEEEEeCCCeEEEEEcCCCcc--cceeecCCccCCCCeeEEEeCCCCc
Q 037120 252 STGSHGTLNSIQLHAE---N-----------QIIFAAGKHGSIYLWDLRGGRT--SAPFHNHKEVCHLPLTSLKLASMLE 315 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~---~-----------~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~ 315 (489)
...|.-.|++++|.|- | +.|++||.|+.|+||+..+++- -..|.+|.+. |+.++|.|.-.
T Consensus 145 ~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dw----VRDVAwaP~~g 220 (299)
T KOG1332|consen 145 VFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDW----VRDVAWAPSVG 220 (299)
T ss_pred hhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchh----hhhhhhccccC
Confidence 6699999999999986 4 4589999999999999988643 4458889888 88888887421
Q ss_pred ceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCC
Q 037120 316 KIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTN 395 (489)
Q Consensus 316 ~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (489)
. .
T Consensus 221 l-----------------------------------------------------------~------------------- 222 (299)
T KOG1332|consen 221 L-----------------------------------------------------------P------------------- 222 (299)
T ss_pred C-----------------------------------------------------------C-------------------
Confidence 1 0
Q ss_pred cEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEE
Q 037120 396 SIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVV 475 (489)
Q Consensus 396 ~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~ 475 (489)
..+++++|+||++.||...... .+ -....++ .....+..++|++.|+.|+.++.|..+.+|
T Consensus 223 ~s~iAS~SqDg~viIwt~~~e~-e~------wk~tll~------------~f~~~~w~vSWS~sGn~LaVs~GdNkvtlw 283 (299)
T KOG1332|consen 223 KSTIASCSQDGTVIIWTKDEEY-EP------WKKTLLE------------EFPDVVWRVSWSLSGNILAVSGGDNKVTLW 283 (299)
T ss_pred ceeeEEecCCCcEEEEEecCcc-Cc------ccccccc------------cCCcceEEEEEeccccEEEEecCCcEEEEE
Confidence 4578999999999999876320 00 0111122 466789999999999999999999999999
Q ss_pred ec
Q 037120 476 SQ 477 (489)
Q Consensus 476 ~~ 477 (489)
-.
T Consensus 284 ke 285 (299)
T KOG1332|consen 284 KE 285 (299)
T ss_pred Ee
Confidence 54
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.6e-24 Score=175.51 Aligned_cols=239 Identities=18% Similarity=0.256 Sum_probs=180.1
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
|.++.|+-++.+.|.+|+ |.+|++|+.. ...++.++.+|...|.+++.+.|+. .|++|+.|..|.
T Consensus 20 V~avryN~dGnY~ltcGs--drtvrLWNp~------------rg~liktYsghG~EVlD~~~s~Dns-kf~s~GgDk~v~ 84 (307)
T KOG0316|consen 20 VRAVRYNVDGNYCLTCGS--DRTVRLWNPL------------RGALIKTYSGHGHEVLDAALSSDNS-KFASCGGDKAVQ 84 (307)
T ss_pred eEEEEEccCCCEEEEcCC--CceEEeeccc------------ccceeeeecCCCceeeecccccccc-ccccCCCCceEE
Confidence 999999999987777777 5999999982 2223444599999999999999988 999999999999
Q ss_pred EEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc--cceeecCCccCCCCeeEEEeCCCCc
Q 037120 238 IWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT--SAPFHNHKEVCHLPLTSLKLASMLE 315 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~ 315 (489)
+||+.+++ ..+.+.+|.+.|+.++|+.+...+++|+.|.++++||.|+... ++.+...... |.++.
T Consensus 85 vwDV~TGk--v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~----V~Si~------ 152 (307)
T KOG0316|consen 85 VWDVNTGK--VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDG----VSSID------ 152 (307)
T ss_pred EEEcccCe--eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCc----eeEEE------
Confidence 99999998 8888999999999999999999999999999999999997432 4444443333 44443
Q ss_pred ceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCC
Q 037120 316 KIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTN 395 (489)
Q Consensus 316 ~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (489)
+ .+..+++.+.|++ .+..++..|....-+.- .++..++++++
T Consensus 153 --------------------v--~~heIvaGS~DGt-vRtydiR~G~l~sDy~g--------------~pit~vs~s~d- 194 (307)
T KOG0316|consen 153 --------------------V--AEHEIVAGSVDGT-VRTYDIRKGTLSSDYFG--------------HPITSVSFSKD- 194 (307)
T ss_pred --------------------e--cccEEEeeccCCc-EEEEEeecceeehhhcC--------------CcceeEEecCC-
Confidence 3 2233444444443 23455555554332221 11233445555
Q ss_pred cEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCc--eEEEEeeCCCCeEEeccCcceeE
Q 037120 396 SIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEG--VTACVTHPLNNTIVAGTKNSSLL 473 (489)
Q Consensus 396 ~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~~va~~p~~~~i~sgs~dg~i~ 473 (489)
+...+.++.|++|++.|-.++ ++++..+ ||... =+.+++......+++|++||.+.
T Consensus 195 ~nc~La~~l~stlrLlDk~tG----------klL~sYk------------Ghkn~eykldc~l~qsdthV~sgSEDG~Vy 252 (307)
T KOG0316|consen 195 GNCSLASSLDSTLRLLDKETG----------KLLKSYK------------GHKNMEYKLDCCLNQSDTHVFSGSEDGKVY 252 (307)
T ss_pred CCEEEEeeccceeeecccchh----------HHHHHhc------------ccccceeeeeeeecccceeEEeccCCceEE
Confidence 455556689999999999999 8998888 88754 36677777888999999999999
Q ss_pred EEeccccccc
Q 037120 474 VVSQKQQCTS 483 (489)
Q Consensus 474 v~~~~~~~~~ 483 (489)
+|.-..+.+.
T Consensus 253 ~wdLvd~~~~ 262 (307)
T KOG0316|consen 253 FWDLVDETQI 262 (307)
T ss_pred EEEeccceee
Confidence 9987766543
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=198.89 Aligned_cols=329 Identities=17% Similarity=0.214 Sum_probs=230.9
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEee---CC----CCCEE
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWN---LA----NQDEV 171 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~---~~----~~~~l 171 (489)
..++.|++..+.|.+.-.|..++|||+.....+.+ ...+.-|....|+|..+-.+ |. -...+
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk-----------~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF 395 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGK-----------CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCF 395 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEeccccccccc-----------eeeeeeccceeeeeccccccccCcccccCCccce
Confidence 56788999999999999999999999987332221 11123355553332222211 00 12368
Q ss_pred EEEecCCCEEEEEEeccCCCCCc--------------------eeeee-----ceeeeeecCCcccCeeEEEEecCCCcE
Q 037120 172 ACASTRSNVVSIYDIGYISDEPV--------------------EVLKT-----RRSVTVVGSDVQKGLSDLAFSAVNTSR 226 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~--------------------~~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~~ 226 (489)
++++.| ++|++||+........ +.+.. .........+-...+.+++.+|+++ +
T Consensus 396 ~TCSsD-~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq-h 473 (1080)
T KOG1408|consen 396 TTCSSD-GTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ-H 473 (1080)
T ss_pred eEecCC-CcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc-e
Confidence 888888 9999999965211110 00000 0000111223456899999999999 9
Q ss_pred EEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEee---cCCEEEEEeCCCeEEEEEcCCC-cccceeecCCccCC
Q 037120 227 LIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHA---ENQIIFAAGKHGSIYLWDLRGG-RTSAPFHNHKEVCH 302 (489)
Q Consensus 227 l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p---~~~~l~~~~~dg~i~lwd~~~~-~~~~~~~~~~~~~~ 302 (489)
|++|..-|.++|||+..-+ ..-.+.+|+..|.|+.|+. ..++|++++.|.-|.+||+... ..+.++.+|...
T Consensus 474 LAsGDr~GnlrVy~Lq~l~--~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSss-- 549 (1080)
T KOG1408|consen 474 LASGDRGGNLRVYDLQELE--YTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSS-- 549 (1080)
T ss_pred ecccCccCceEEEEehhhh--hhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccc--
Confidence 9999999999999998765 3445679999999999985 4567888899999999999754 448899999988
Q ss_pred CCeeEEEeCCCCc---ceeecc---------------------ccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEe
Q 037120 303 LPLTSLKLASMLE---KIGTLK---------------------AQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDV 358 (489)
Q Consensus 303 ~~v~~l~~~~~~~---~i~~~~---------------------~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~ 358 (489)
|+++.|.-.|. +| +.. .........++.|++.|..+++++.+.|.. .++.++
T Consensus 550 --ITsvKFa~~gln~~Mi-scGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrn-irif~i 625 (1080)
T KOG1408|consen 550 --ITSVKFACNGLNRKMI-SCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRN-IRIFDI 625 (1080)
T ss_pred --eeEEEEeecCCceEEE-eccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccc-eEEEec
Confidence 99999998872 22 100 001112456889999999999999988765 346666
Q ss_pred eccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhh
Q 037120 359 YNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKL 438 (489)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (489)
..|...+.+.-...-..+ .-++..-| .+.|+++...|.++.++|+.++ +.+..+.
T Consensus 626 ~sgKq~k~FKgs~~~eG~---------lIKv~lDP-SgiY~atScsdktl~~~Df~sg----------EcvA~m~----- 680 (1080)
T KOG1408|consen 626 ESGKQVKSFKGSRDHEGD---------LIKVILDP-SGIYLATSCSDKTLCFVDFVSG----------ECVAQMT----- 680 (1080)
T ss_pred cccceeeeecccccCCCc---------eEEEEECC-CccEEEEeecCCceEEEEeccc----------hhhhhhc-----
Confidence 666666644331111000 00011111 2889999999999999999999 9998888
Q ss_pred cccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccc
Q 037120 439 KKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 439 ~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
||.+.|+.+.|.++-+.|++.+.||+|+||---..
T Consensus 681 -------GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 681 -------GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred -------CcchheeeeeecccchhheeecCCceEEEEECchh
Confidence 99999999999999999999999999999965443
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-23 Score=188.09 Aligned_cols=249 Identities=14% Similarity=0.218 Sum_probs=196.7
Q ss_pred cCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 94 FGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
....+|.++...|....+++|+.|..+.++|....+... . +.||... |+.+.|+|+.. .+++
T Consensus 217 t~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~--------~------~~Gh~kk---i~~v~~~~~~~-~v~~ 278 (506)
T KOG0289|consen 217 TSTPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA--------T------LKGHTKK---ITSVKFHKDLD-TVIT 278 (506)
T ss_pred cCCCCeeEEeecCCCCcceecCCCCceEEEecchhhhhh--------h------ccCcceE---EEEEEeccchh-heee
Confidence 344679999999988899999999999999999866555 2 3566666 99999999975 7777
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST 253 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 253 (489)
++.| -.|+||.+...... .. ...|..+|+.+..+|.|. +|++++.|+++.+.|++++...+...-.
T Consensus 279 aSad-~~i~vws~~~~s~~------~~------~~~h~~~V~~ls~h~tge-YllsAs~d~~w~Fsd~~~g~~lt~vs~~ 344 (506)
T KOG0289|consen 279 ASAD-EIIRVWSVPLSSEP------TS------SRPHEEPVTGLSLHPTGE-YLLSASNDGTWAFSDISSGSQLTVVSDE 344 (506)
T ss_pred cCCc-ceEEeeccccccCc------cc------cccccccceeeeeccCCc-EEEEecCCceEEEEEccCCcEEEEEeec
Confidence 8877 99999999433211 11 156889999999999999 9999999999999999998733221111
Q ss_pred CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeE
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHS 333 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~ 333 (489)
...-.+++.+|+|||.++.+|..||.|+|||+..+..+..|.+|.+. |.+++|+.+
T Consensus 345 ~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~----vk~i~FsEN-------------------- 400 (506)
T KOG0289|consen 345 TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGP----VKAISFSEN-------------------- 400 (506)
T ss_pred cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCc----eeEEEeccC--------------------
Confidence 22345899999999999999999999999999999889999998866 777765532
Q ss_pred EEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEec
Q 037120 334 IDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDF 413 (489)
Q Consensus 334 ~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~ 413 (489)
|.|++++.+|++|++||+
T Consensus 401 --------------------------------------------------------------GY~Lat~add~~V~lwDL 418 (506)
T KOG0289|consen 401 --------------------------------------------------------------GYWLATAADDGSVKLWDL 418 (506)
T ss_pred --------------------------------------------------------------ceEEEEEecCCeEEEEEe
Confidence 778888899999999999
Q ss_pred cCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccccc
Q 037120 414 FPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQC 481 (489)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~ 481 (489)
+.. +..+.+.. .-..+|.++.|.+.|.+++.+|.|=.|.++..+.++
T Consensus 419 RKl----------~n~kt~~l-----------~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~ 465 (506)
T KOG0289|consen 419 RKL----------KNFKTIQL-----------DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS 465 (506)
T ss_pred hhh----------cccceeec-----------cccccceeEEEcCCCCeEEeecceeEEEEEeccccc
Confidence 987 55544431 223369999999999999999887777776655543
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-23 Score=177.86 Aligned_cols=278 Identities=13% Similarity=0.138 Sum_probs=189.2
Q ss_pred EEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccC
Q 037120 110 YLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYI 189 (489)
Q Consensus 110 ~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~ 189 (489)
.|++|+....|.=+++......... ...-++.+...+..|... |++|+.+- ..+++|+.| -+|+|||++..
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~--s~~~~l~~lF~~~aH~~s---itavAVs~---~~~aSGssD-etI~IYDm~k~ 73 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTD--SVKPTLKPLFAFSAHAGS---ITALAVSG---PYVASGSSD-ETIHIYDMRKR 73 (362)
T ss_pred eEEEeeeeeEEEEEEeccCcccccc--ccceeeeccccccccccc---eeEEEecc---eeEeccCCC-CcEEEEeccch
Confidence 3677888888877777653311100 000023333444556666 99999864 378899888 89999999433
Q ss_pred CCCCceeeeeceeeeeecCCcccCeeEEEEecCCC-cEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecC
Q 037120 190 SDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT-SRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAEN 268 (489)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 268 (489)
.+ ...+..|.+.|+++.|.+.-. +.|++|+.||.|.+|+...-+ ++..+.+|.+.|+.++.+|.+
T Consensus 74 ~q------------lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~--~~~slK~H~~~Vt~lsiHPS~ 139 (362)
T KOG0294|consen 74 KQ------------LGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWE--LLKSLKAHKGQVTDLSIHPSG 139 (362)
T ss_pred hh------------hcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeE--EeeeecccccccceeEecCCC
Confidence 21 112356899999999987652 479999999999999988754 888999999999999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEe
Q 037120 269 QIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHL 348 (489)
Q Consensus 269 ~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~ 348 (489)
++.++.|.|+.+++||+-.|+.-..++-... -+.+.|+|.|.++. +...
T Consensus 140 KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-----at~v~w~~~Gd~F~--------------------------v~~~ 188 (362)
T KOG0294|consen 140 KLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-----ATLVSWSPQGDHFV--------------------------VSGR 188 (362)
T ss_pred ceEEEEcCCceeeeehhhcCccceeeccCCc-----ceeeEEcCCCCEEE--------------------------EEec
Confidence 9999999999999999999887544443221 23466666665443 2111
Q ss_pred cCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcc
Q 037120 349 DDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNED 428 (489)
Q Consensus 349 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~ 428 (489)
+ .+++|.-...+++. ... .+.+..+-.+..+.++++|.+|+.|.+||..+. ..
T Consensus 189 ~-----~i~i~q~d~A~v~~------~i~------~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~----------~~ 241 (362)
T KOG0294|consen 189 N-----KIDIYQLDNASVFR------EIE------NPKRILCATFLDGSELLVGGDNEWISLKDTDSD----------TP 241 (362)
T ss_pred c-----EEEEEecccHhHhh------hhh------ccccceeeeecCCceEEEecCCceEEEeccCCC----------cc
Confidence 1 11111111111000 000 001122222233667888889999999999877 56
Q ss_pred cchhhHhhhhcccCCcccCCCceEEEEe--eCCCCeEEeccCcceeEEEecccc
Q 037120 429 IESLSERTKLKKENRFVPLSEGVTACVT--HPLNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~h~~~V~~va~--~p~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
+..+. +|...|-++++ .|.+.+|+|+|.||.|+||...-+
T Consensus 242 ~~~~~------------AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 242 LTEFL------------AHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ceeee------------cchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 66666 99999999985 567789999999999999976554
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.3e-23 Score=175.80 Aligned_cols=281 Identities=13% Similarity=0.160 Sum_probs=182.1
Q ss_pred cCCCceeEEEECC-CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 94 FGKPGISALDFDC-KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 94 ~~~~~V~~~~fs~-~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
+.+..|.+|+||| ...++++|+.||+||+|+++.. |...+ .....|.+. |.+++|+.++. .++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~-----------g~~~~-ka~~~~~~P---vL~v~Wsddgs-kVf 88 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNS-----------GQLVP-KAQQSHDGP---VLDVCWSDDGS-KVF 88 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecC-----------Ccccc-hhhhccCCC---eEEEEEccCCc-eEE
Confidence 3445699999999 5667779999999999999872 11222 111234455 99999999996 666
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCC-cEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT-SRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
+|+.| +.+++||+..+ ++ ... ..|..+|..+.|-+... ..|+|||-|.+|+.||.|... .+..
T Consensus 89 ~g~~D-k~~k~wDL~S~-----Q~----~~v----~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~--pv~t 152 (347)
T KOG0647|consen 89 SGGCD-KQAKLWDLASG-----QV----SQV----AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN--PVAT 152 (347)
T ss_pred eeccC-CceEEEEccCC-----Ce----eee----eecccceeEEEEecCCCcceeEecccccceeecccCCCC--eeee
Confidence 66666 99999999433 11 111 56999999999987543 278999999999999999754 2322
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCCCcce--eeccccceeec
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASMLEKI--GTLKAQSKIVS 328 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~i--~~~~~~~~~~~ 328 (489)
+ .-.+.++++.. ....++++..+..|.+|+++++.. .+.++. ...-.+++++...+.... +++. ..
T Consensus 153 ~-~LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~S---pLk~Q~R~va~f~d~~~~alGsiE-----Gr 221 (347)
T KOG0647|consen 153 L-QLPERVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIES---PLKWQTRCVACFQDKDGFALGSIE-----GR 221 (347)
T ss_pred e-eccceeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcC---cccceeeEEEEEecCCceEeeeec-----ce
Confidence 2 22455665554 456778888899999999987643 222222 111227888777666433 2211 11
Q ss_pred cceeEEEe-CCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCc
Q 037120 329 QEIHSIDL-DPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHG 407 (489)
Q Consensus 329 ~~i~~~~~-~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~ 407 (489)
..|..|.- .|...+.+-|+....- +. -+...+..++|+|..+. +++.+.||+
T Consensus 222 v~iq~id~~~~~~nFtFkCHR~~~~----------~~----------------~~VYaVNsi~FhP~hgt-lvTaGsDGt 274 (347)
T KOG0647|consen 222 VAIQYIDDPNPKDNFTFKCHRSTNS----------VN----------------DDVYAVNSIAFHPVHGT-LVTAGSDGT 274 (347)
T ss_pred EEEEecCCCCccCceeEEEeccCCC----------CC----------------CceEEecceEeecccce-EEEecCCce
Confidence 12233322 2222222222221110 00 01233455677776665 455678999
Q ss_pred EEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEec
Q 037120 408 IHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAG 466 (489)
Q Consensus 408 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sg 466 (489)
+.+||-... ..+...+ .|..+|++++|+-+|.++|-+
T Consensus 275 f~FWDkdar----------~kLk~s~------------~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 275 FSFWDKDAR----------TKLKTSE------------THPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred EEEecchhh----------hhhhccC------------cCCCccceeEecCCCCEEEEE
Confidence 999998877 6666666 899999999999999977643
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.9e-23 Score=200.11 Aligned_cols=173 Identities=16% Similarity=0.171 Sum_probs=135.3
Q ss_pred cccCCCceeEEEECC-CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDC-KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~-~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..|...|.+++|+| ++++||+|+.||+|+|||+........ ...+...+.+|... |.+++|+|++..+
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~-------~~~~l~~L~gH~~~---V~~l~f~P~~~~i 140 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN-------ISDPIVHLQGHTKK---VGIVSFHPSAMNV 140 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc-------cCcceEEecCCCCc---EEEEEeCcCCCCE
Confidence 455667799999999 889999999999999999976322110 01122334567766 9999999987778
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
|++++.| ++|+|||+... .. ...+.+|...|.+++|+|++. +|++++.|+.|++||+++++ .+.
T Consensus 141 LaSgs~D-gtVrIWDl~tg-----~~-------~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~--~v~ 204 (493)
T PTZ00421 141 LASAGAD-MVVNVWDVERG-----KA-------VEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGT--IVS 204 (493)
T ss_pred EEEEeCC-CEEEEEECCCC-----eE-------EEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCc--EEE
Confidence 9999988 99999999432 11 122377999999999999998 99999999999999999876 555
Q ss_pred eccCCCCc-eeEEEEeecCCEEEEEe----CCCeEEEEEcCCCcc
Q 037120 251 LSTGSHGT-LNSIQLHAENQIIFAAG----KHGSIYLWDLRGGRT 290 (489)
Q Consensus 251 ~~~~h~~~-v~~~~~~p~~~~l~~~~----~dg~i~lwd~~~~~~ 290 (489)
.+.+|.+. +..+.|.+++..+++++ .|+.|++||+++...
T Consensus 205 tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 205 SVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred EEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 66678765 45678999988888765 379999999997653
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=197.20 Aligned_cols=294 Identities=17% Similarity=0.201 Sum_probs=202.6
Q ss_pred EEECCC---CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 102 LDFDCK---GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 102 ~~fs~~---g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
..|++. ...||.+..||.|.++|......... ......+..|... |..+.|.| ++.+|++++.|
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~e--------e~~lk~~~aH~nA---ifDl~wap-ge~~lVsasGD- 121 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLE--------ERQLKKPLAHKNA---IFDLKWAP-GESLLVSASGD- 121 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchh--------hhhhcccccccce---eEeeccCC-CceeEEEccCC-
Confidence 445543 56899999999999999887433311 1112345668777 88899999 67789998888
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-----ce----
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-----SL---- 249 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-----~~---- 249 (489)
.++++||+... ... -...+ .||...|.+++|.|+++..|++|+.||.|.|||++..... +.
T Consensus 122 sT~r~Wdvk~s-----~l~-G~~~~----~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~ 191 (720)
T KOG0321|consen 122 STIRPWDVKTS-----RLV-GGRLN----LGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYG 191 (720)
T ss_pred ceeeeeeeccc-----eee-cceee----cccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhc
Confidence 99999999432 111 12223 8999999999999999999999999999999998754310 11
Q ss_pred ----------------eeccCCCCceeE---EEEeecCCEEEEEeC-CCeEEEEEcCCCcccceeecCCccCCCCeeEEE
Q 037120 250 ----------------ELSTGSHGTLNS---IQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLK 309 (489)
Q Consensus 250 ----------------~~~~~h~~~v~~---~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~ 309 (489)
....++...|.+ +.+..|...|+++|. |+.|++||+|+......... .....
T Consensus 192 ~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep--------~~~~~ 263 (720)
T KOG0321|consen 192 RHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEP--------RGSDK 263 (720)
T ss_pred cccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCC--------CcccC
Confidence 111244455665 667789999999998 99999999998765333221 11111
Q ss_pred eCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCc---e------EEEEeeccceeeecCCCCCCcCCCCcc
Q 037120 310 LASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGW---S------GVLDVYNSRVSHVHCPPPAWLSDSNNS 380 (489)
Q Consensus 310 ~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w---~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (489)
+... ......+.++..+..|.++++.+.|+.. . .....+.|+....+.+....+.+
T Consensus 264 ~~t~-----------skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd---- 328 (720)
T KOG0321|consen 264 YPTH-----------SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPD---- 328 (720)
T ss_pred ccCc-----------ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCC----
Confidence 1000 1122345777888889999999888762 1 12222333333322222222333
Q ss_pred ccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCC
Q 037120 381 ADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLN 460 (489)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~ 460 (489)
+.++++|+.|...++|.+... +....+. .||.-.|++|+|.|..
T Consensus 329 ---------------~~~l~SgSsd~~ayiw~vs~~----------e~~~~~l-----------~Ght~eVt~V~w~pS~ 372 (720)
T KOG0321|consen 329 ---------------DCSLLSGSSDEQAYIWVVSSP----------EAPPALL-----------LGHTREVTTVRWLPSA 372 (720)
T ss_pred ---------------CceEeccCCCcceeeeeecCc----------cCChhhh-----------hCcceEEEEEeecccc
Confidence 889999999999999999877 3333222 2999999999999976
Q ss_pred -CeEEeccCcceeEEEec
Q 037120 461 -NTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 461 -~~i~sgs~dg~i~v~~~ 477 (489)
.-+|++++|..+.+|.-
T Consensus 373 ~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 373 TTPVATCSDDFRVKIWRL 390 (720)
T ss_pred CCCceeeccCcceEEEec
Confidence 36888899999999965
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-23 Score=188.76 Aligned_cols=271 Identities=13% Similarity=0.132 Sum_probs=194.5
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccC-CCCCCC-C-Cccccccc-ccCCCCCCceeEEEeeCCC
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCN-GTLPGV-G-LKEDQSKH-LLHIPLPQQLDAVRWNLAN 167 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~-~~~~~~-g-~~~~~~~~-~~h~~~~~~V~~v~~~~~~ 167 (489)
...|+..|.|++++|++.+..+++.||+|.=|++.++..... .+.+.+ + ...+.... .+|..+ |.+++.++++
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~ke---il~~avS~Dg 214 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKE---ILTLAVSSDG 214 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccce---eEEEEEcCCC
Confidence 455777899999999999999999999999999988664421 111000 0 00111111 367777 9999999999
Q ss_pred CCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC
Q 037120 168 QDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP 247 (489)
Q Consensus 168 ~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 247 (489)
. .|++|+.| ..|.|||.. .+...+.+ .+|.+.|.+++|-.... .+++++.|..|++|++....
T Consensus 215 k-ylatgg~d-~~v~Iw~~~--------t~ehv~~~----~ghr~~V~~L~fr~gt~-~lys~s~Drsvkvw~~~~~s-- 277 (479)
T KOG0299|consen 215 K-YLATGGRD-RHVQIWDCD--------TLEHVKVF----KGHRGAVSSLAFRKGTS-ELYSASADRSVKVWSIDQLS-- 277 (479)
T ss_pred c-EEEecCCC-ceEEEecCc--------ccchhhcc----cccccceeeeeeecCcc-ceeeeecCCceEEEehhHhH--
Confidence 7 77788877 999999993 33334444 89999999999986554 99999999999999998765
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceee
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIV 327 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~ 327 (489)
.+..+.+|.+.|..+....-++.+-+|+.|.++++|++.. .....+.++.+. +.+++|-
T Consensus 278 ~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~s----idcv~~I---------------- 336 (479)
T KOG0299|consen 278 YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGS----IDCVAFI---------------- 336 (479)
T ss_pred HHHHHhCCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeCCCCC----eeeEEEe----------------
Confidence 7778889999999999888888777777899999999943 212233333333 2222211
Q ss_pred ccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCc
Q 037120 328 SQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHG 407 (489)
Q Consensus 328 ~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~ 407 (489)
. ...+++||+||.
T Consensus 337 -----------------------------------------------n--------------------~~HfvsGSdnG~ 349 (479)
T KOG0299|consen 337 -----------------------------------------------N--------------------DEHFVSGSDNGS 349 (479)
T ss_pred -----------------------------------------------c--------------------ccceeeccCCce
Confidence 1 345788999999
Q ss_pred EEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccc
Q 037120 408 IHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 408 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
|.+|++... +.+.....+-........+.+...|++++..|..+++|+|+.+|.|+||-.+..
T Consensus 350 IaLWs~~KK----------kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 350 IALWSLLKK----------KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred EEEeeeccc----------CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 999999877 333222100000001122345569999999999999999999999999987665
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-24 Score=188.24 Aligned_cols=281 Identities=12% Similarity=0.115 Sum_probs=193.8
Q ss_pred cccCCCceeEEEECCCC-cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDCKG-IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g-~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..|..||.|++=+|.. ..+|+|+.||.|+|||+....+.. .+..|..+ |..+++... .
T Consensus 62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~--------~f~AH~G~---------V~Gi~v~~~---~ 121 (433)
T KOG0268|consen 62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR--------TFKAHEGL---------VRGICVTQT---S 121 (433)
T ss_pred ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh--------eeecccCc---------eeeEEeccc---c
Confidence 46688999999999987 789999999999999999866665 34444444 888999872 4
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
+++++.| .+|+.|-+... +..++ .+ ...+..|.-+..+. .++|||. .|.|||.+... +++
T Consensus 122 ~~tvgdD-KtvK~wk~~~~---------p~~ti----lg-~s~~~gIdh~~~~~-~FaTcGe--~i~IWD~~R~~--Pv~ 181 (433)
T KOG0268|consen 122 FFTVGDD-KTVKQWKIDGP---------PLHTI----LG-KSVYLGIDHHRKNS-VFATCGE--QIDIWDEQRDN--PVS 181 (433)
T ss_pred eEEecCC-cceeeeeccCC---------cceee----ec-cccccccccccccc-cccccCc--eeeecccccCC--ccc
Confidence 5566656 99999998431 12222 11 23566677666666 8999986 68999998654 455
Q ss_pred eccCCCCceeEEEEeecCCEEEEEe-CCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeecc
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAG-KHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQ 329 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~-~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~ 329 (489)
.+.-....|.++.|+|....+++++ .|+.|.|||+|++..++.+... -. .+.++|+|.+-.+......
T Consensus 182 smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~-mR----TN~IswnPeafnF~~a~ED------ 250 (433)
T KOG0268|consen 182 SMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT-MR----TNTICWNPEAFNFVAANED------ 250 (433)
T ss_pred eeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee-cc----ccceecCccccceeecccc------
Confidence 5555568899999999887766665 6999999999998876554421 11 5677888844333211100
Q ss_pred ceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEE
Q 037120 330 EIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIH 409 (489)
Q Consensus 330 ~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~ 409 (489)
..+.++...+ ....+.++.+|+..+..+ .|++. |.-+++||.|.+|+
T Consensus 251 -----------~nlY~~DmR~-l~~p~~v~~dhvsAV~dV--dfspt-------------------G~EfvsgsyDksIR 297 (433)
T KOG0268|consen 251 -----------HNLYTYDMRN-LSRPLNVHKDHVSAVMDV--DFSPT-------------------GQEFVSGSYDKSIR 297 (433)
T ss_pred -----------ccceehhhhh-hcccchhhcccceeEEEe--ccCCC-------------------cchhccccccceEE
Confidence 1111111100 124566777777776655 55555 66788999999999
Q ss_pred EEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 410 LLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 410 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
||.+..+ ..-...- . ---..|.+|.|+-+..+|+|||.||.|++|-.
T Consensus 298 If~~~~~----------~SRdiYh--t---------kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 298 IFPVNHG----------HSRDIYH--T---------KRMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred EeecCCC----------cchhhhh--H---------hhhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 9999877 2111110 0 01135999999999999999999999999943
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=203.73 Aligned_cols=251 Identities=14% Similarity=0.203 Sum_probs=170.5
Q ss_pred cCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccC---------------------------CCC----------
Q 037120 150 LHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYI---------------------------SDE---------- 192 (489)
Q Consensus 150 ~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~---------------------------~~~---------- 192 (489)
.|.+. |.++.|+++|. +||+|+.| |.|+||.+... ...
T Consensus 265 ah~ga---Iw~mKFS~DGK-yLAsaGeD-~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 265 AHKGA---IWAMKFSHDGK-YLASAGED-GVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred ccCCc---EEEEEeCCCCc-eeeecCCC-ceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 56666 99999999996 88999998 99999998650 000
Q ss_pred ------Cceee-----eeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeE
Q 037120 193 ------PVEVL-----KTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNS 261 (489)
Q Consensus 193 ------~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~ 261 (489)
+...+ .........+.||.+.|.+|.|+.++ +|++++.|.+|++|++...+ |+..+ .|.+.|+|
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~--fLLSSSMDKTVRLWh~~~~~--CL~~F-~HndfVTc 414 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN--FLLSSSMDKTVRLWHPGRKE--CLKVF-SHNDFVTC 414 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccCC--eeEeccccccEEeecCCCcc--eeeEE-ecCCeeEE
Confidence 00000 00112234468999999999999654 79999999999999999766 88776 79999999
Q ss_pred EEEee-cCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce--eeccccceeeccceeEEEeCC
Q 037120 262 IQLHA-ENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI--GTLKAQSKIVSQEIHSIDLDP 338 (489)
Q Consensus 262 ~~~~p-~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i--~~~~~~~~~~~~~i~~~~~~p 338 (489)
++|+| |.+|+++|+-||.||||++..-+.+ .+....+. |++++|.|||+.. +++.
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv-~W~Dl~~l----ITAvcy~PdGk~avIGt~~----------------- 472 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVV-DWNDLRDL----ITAVCYSPDGKGAVIGTFN----------------- 472 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeE-eehhhhhh----heeEEeccCCceEEEEEec-----------------
Confidence 99999 6788999999999999999875543 33333355 8889888888654 3221
Q ss_pred CCCeEEEEEecCCce--EEEEeec------cceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 339 SCSYQLAFHLDDGWS--GVLDVYN------SRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 339 ~~~~~~~~~~~~~w~--~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
|...+.-+.+.... .-+.... ..++.+. +.+.. -..+||| +.|..|||
T Consensus 473 -G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q-----~~p~~-----------------~~~vLVT-SnDSrIRI 528 (712)
T KOG0283|consen 473 -GYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQ-----FFPGD-----------------PDEVLVT-SNDSRIRI 528 (712)
T ss_pred -cEEEEEEccCCeEEEeeeEeeccCccccCceeeeeE-----ecCCC-----------------CCeEEEe-cCCCceEE
Confidence 11111111111100 0111110 1111111 11111 0345555 79999999
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCC--CceEEEEeeCCCCeEEeccCcceeEEEecc
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLS--EGVTACVTHPLNNTIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~va~~p~~~~i~sgs~dg~i~v~~~~ 478 (489)
+|.... ..+..++ |+. ..=....|..+|++|+++++|.-|.||.-+
T Consensus 529 ~d~~~~----------~lv~KfK------------G~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 529 YDGRDK----------DLVHKFK------------GFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred Eeccch----------hhhhhhc------------ccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 999888 7777777 543 234567889999999999999999999853
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-23 Score=189.36 Aligned_cols=242 Identities=16% Similarity=0.189 Sum_probs=175.0
Q ss_pred ccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 93 SFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
....+.|.+++|+|...+=.+.+..-.+.||+..+...... +.. -... |.+++|-.||. +++
T Consensus 23 ~ke~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~--------~sr------Fk~~---v~s~~fR~DG~-Lla 84 (487)
T KOG0310|consen 23 HKEHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKT--------FSR------FKDV---VYSVDFRSDGR-LLA 84 (487)
T ss_pred ccccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhh--------HHh------hccc---eeEEEeecCCe-EEE
Confidence 33456799999999765544444455799999887444331 111 1112 88999999986 777
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeec
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELS 252 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 252 (489)
+|... |.|+|||+ ++... ...+.+|+.+|..+.|+|+++.+|++|+.|+.+++||+.+.. ....+
T Consensus 85 aGD~s-G~V~vfD~-----k~r~i-------LR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~--v~~~l 149 (487)
T KOG0310|consen 85 AGDES-GHVKVFDM-----KSRVI-------LRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY--VQAEL 149 (487)
T ss_pred ccCCc-CcEEEecc-----ccHHH-------HHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE--EEEEe
Confidence 77766 99999997 21112 222378999999999999998889999999999999999876 33356
Q ss_pred cCCCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCCCc-ccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccc
Q 037120 253 TGSHGTLNSIQLHAENQ-IIFAAGKHGSIYLWDLRGGR-TSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQE 330 (489)
Q Consensus 253 ~~h~~~v~~~~~~p~~~-~l~~~~~dg~i~lwd~~~~~-~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~ 330 (489)
.+|++.|.|.+|+|-.. .+++||.||+|++||+|... .+.++. |..+ |.++
T Consensus 150 ~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~p----Ve~v---------------------- 202 (487)
T KOG0310|consen 150 SGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCP----VESV---------------------- 202 (487)
T ss_pred cCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec-CCCc----eeeE----------------------
Confidence 79999999999999766 67777889999999999752 233332 2211 3333
Q ss_pred eeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 331 IHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 331 i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
.+-|. +..++++ ..+.|+|
T Consensus 203 ----l~lps--------------------------------------------------------gs~iasA-gGn~vkV 221 (487)
T KOG0310|consen 203 ----LALPS--------------------------------------------------------GSLIASA-GGNSVKV 221 (487)
T ss_pred ----EEcCC--------------------------------------------------------CCEEEEc-CCCeEEE
Confidence 22222 2233332 2358999
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
||+.++ .+.+.... .|...|+|+.+..++..++|||.||.++||.
T Consensus 222 WDl~~G---------~qll~~~~------------~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd 266 (487)
T KOG0310|consen 222 WDLTTG---------GQLLTSMF------------NHNKTVTCLRLASDSTRLLSGSLDRHVKVFD 266 (487)
T ss_pred EEecCC---------ceehhhhh------------cccceEEEEEeecCCceEeecccccceEEEE
Confidence 999966 14444444 6999999999999999999999999999987
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.2e-23 Score=204.20 Aligned_cols=237 Identities=18% Similarity=0.272 Sum_probs=194.4
Q ss_pred CCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
+...+.|..|. +.++++|+.|.+|++||......... .+.+|.+. |.++++.. +..++++|
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~-------------~l~GH~g~---V~~l~~~~-~~~~lvsg 267 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT-------------RLVGHFGG---VWGLAFPS-GGDKLVSG 267 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe-------------eccCCCCC---ceeEEEec-CCCEEEEE
Confidence 34458888887 56899999999999999998555442 24678777 88899987 55699999
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccC
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 254 (489)
+.| .++++||+..+ .+.+.+.+|...|.++...+ . .+++|+.|.+|++||+.++. ++..+.+
T Consensus 268 S~D-~t~rvWd~~sg------------~C~~~l~gh~stv~~~~~~~--~-~~~sgs~D~tVkVW~v~n~~--~l~l~~~ 329 (537)
T KOG0274|consen 268 STD-KTERVWDCSTG------------ECTHSLQGHTSSVRCLTIDP--F-LLVSGSRDNTVKVWDVTNGA--CLNLLRG 329 (537)
T ss_pred ecC-CcEEeEecCCC------------cEEEEecCCCceEEEEEccC--c-eEeeccCCceEEEEeccCcc--eEEEecc
Confidence 999 99999998433 24455689999999997643 3 78889999999999999887 8888888
Q ss_pred CCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEE
Q 037120 255 SHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSI 334 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~ 334 (489)
|.++|+++..+ +.++++|+.||+|++||+.++++++.+.+|... |.++.+.
T Consensus 330 h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~----V~sl~~~----------------------- 380 (537)
T KOG0274|consen 330 HTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGR----VYSLIVD----------------------- 380 (537)
T ss_pred ccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcce----EEEEEec-----------------------
Confidence 99999999997 889999999999999999999999999999877 6665322
Q ss_pred EeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCc-EEEEeecCCCcEEEEec
Q 037120 335 DLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNS-IYAVGSSSDHGIHLLDF 413 (489)
Q Consensus 335 ~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~sgs~d~~i~vwd~ 413 (489)
+ .++++|+.|++|++||+
T Consensus 381 -------------------------------------------------------------~~~~~~Sgs~D~~IkvWdl 399 (537)
T KOG0274|consen 381 -------------------------------------------------------------SENRLLSGSLDTTIKVWDL 399 (537)
T ss_pred -------------------------------------------------------------CcceEEeeeeccceEeecC
Confidence 2 46888999999999999
Q ss_pred cCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccccc
Q 037120 414 FPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQC 481 (489)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~ 481 (489)
.+.. +.+..+. +|.+.|..+.+ .++.|++++.||.|++|..+...
T Consensus 400 ~~~~---------~c~~tl~------------~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~ 444 (537)
T KOG0274|consen 400 RTKR---------KCIHTLQ------------GHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGE 444 (537)
T ss_pred Cchh---------hhhhhhc------------CCccccccccc--ccceeEeccccccEEEeecccCc
Confidence 8771 4555666 89888876666 67899999999999999766544
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-22 Score=164.31 Aligned_cols=262 Identities=15% Similarity=0.185 Sum_probs=188.3
Q ss_pred CCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccC-CCCCCCCCccccccc---ccCCCCCCceeEEEeeCCCCCEE
Q 037120 96 KPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCN-GTLPGVGLKEDQSKH---LLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~-~~~~~~g~~~~~~~~---~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
.+.|++++|.|.|.+.|+|+...+++|........... +.. -...+...+ .-|.+. |.|++|+|.++ ++
T Consensus 32 sqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea---~~~pp~v~~kr~khhkgs---iyc~~ws~~ge-li 104 (350)
T KOG0641|consen 32 SQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEA---AKQPPSVLCKRNKHHKGS---IYCTAWSPCGE-LI 104 (350)
T ss_pred hhheeeEEecCCCceEEeccCCceEEEEccccccCccccccc---ccCCCeEEeeeccccCcc---EEEEEecCccC-eE
Confidence 45799999999999999999999999986654221111 000 011111112 225556 99999999996 99
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCC---CcEEEEEe-CCCcEEEEECCCCCcC
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVN---TSRLIASD-THGVVNIWDRRVGVLP 247 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~~l~s~s-~dg~i~iwd~~~~~~~ 247 (489)
++|+.| .+|++.-.+..... .....-.+ .-|.+.|.+++|..+. ..+|++++ .|..|++-|...++
T Consensus 105 atgsnd-k~ik~l~fn~dt~~---~~g~dle~----nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~-- 174 (350)
T KOG0641|consen 105 ATGSND-KTIKVLPFNADTCN---ATGHDLEF----NMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQ-- 174 (350)
T ss_pred EecCCC-ceEEEEeccccccc---ccCcceee----eecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCC--
Confidence 999988 99999877533221 11112222 6689999999997542 23677666 67778888888776
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceee
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIV 327 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~ 327 (489)
.++.+.+|.+-|.++ ++-+|-.+++|+.|.+|++||+|-..++.++...... . -..
T Consensus 175 ~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~------------~-----------gle 230 (350)
T KOG0641|consen 175 GFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHD------------G-----------GLE 230 (350)
T ss_pred cceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccC------------C-----------Ccc
Confidence 677788999999876 3446788888888999999999987666555421100 0 011
Q ss_pred ccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCc
Q 037120 328 SQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHG 407 (489)
Q Consensus 328 ~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~ 407 (489)
.+.|.+++++|. ++++++|-.|..
T Consensus 231 ssavaav~vdps--------------------------------------------------------grll~sg~~dss 254 (350)
T KOG0641|consen 231 SSAVAAVAVDPS--------------------------------------------------------GRLLASGHADSS 254 (350)
T ss_pred cceeEEEEECCC--------------------------------------------------------cceeeeccCCCc
Confidence 223344444443 667888889999
Q ss_pred EEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 408 IHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 408 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
..+||+..+ +.++.+. +|+..|.+|-|+|...++.+|+.|..|++-.
T Consensus 255 c~lydirg~----------r~iq~f~------------phsadir~vrfsp~a~yllt~syd~~ikltd 301 (350)
T KOG0641|consen 255 CMLYDIRGG----------RMIQRFH------------PHSADIRCVRFSPGAHYLLTCSYDMKIKLTD 301 (350)
T ss_pred eEEEEeeCC----------ceeeeeC------------CCccceeEEEeCCCceEEEEecccceEEEee
Confidence 999999999 8898888 9999999999999999999999999999843
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.6e-23 Score=194.23 Aligned_cols=285 Identities=13% Similarity=0.173 Sum_probs=210.9
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeE-EEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDA-VRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~-v~~~~~~~~~ 170 (489)
+..|...|..+++.+.. .+++++.||+++||+-...+....+ .++.+..+ |.+ +++.+.....
T Consensus 10 l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~------~~~~~~g~---------i~~~i~y~e~~~~~ 73 (745)
T KOG0301|consen 10 LEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETH------AFEGPKGF---------IANSICYAESDKGR 73 (745)
T ss_pred eccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccce------ecccCcce---------eeccceeccccCcc
Confidence 55677778888876554 8999999999999998663333321 12222223 444 7777654557
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
++.|+.| .+|.+|.+... . ...++.+|...|++++...++. +++||.|.++++|-... +..
T Consensus 74 l~~g~~D-~~i~v~~~~~~--~----------P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~----l~~ 134 (745)
T KOG0301|consen 74 LVVGGMD-TTIIVFKLSQA--E----------PLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGE----LVY 134 (745)
T ss_pred eEeeccc-ceEEEEecCCC--C----------chhhhhccccceeeeecCCcCc--eEecccccceEEecchh----hhc
Confidence 8999999 99999998322 1 2334589999999998766654 89999999999996543 555
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccc
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQE 330 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~ 330 (489)
...+|+..|.+++.-|.+ .+++|+.|.+|++|.- ++.+++|.+|.+. |+.+++-+++.++.
T Consensus 135 ~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~----VRgL~vl~~~~flS------------ 195 (745)
T KOG0301|consen 135 SLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDC----VRGLAVLDDSHFLS------------ 195 (745)
T ss_pred ccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhccchhh----eeeeEEecCCCeEe------------
Confidence 677999999999999998 6799999999999975 6789999999988 99999888765542
Q ss_pred eeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 331 IHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 331 i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
.+.||... ....++ .++..+.||...+|++. .... +..++++++|++++|
T Consensus 196 -----csNDg~Ir-~w~~~g---e~l~~~~ghtn~vYsis--~~~~-------------------~~~Ivs~gEDrtlri 245 (745)
T KOG0301|consen 196 -----CSNDGSIR-LWDLDG---EVLLEMHGHTNFVYSIS--MALS-------------------DGLIVSTGEDRTLRI 245 (745)
T ss_pred -----ecCCceEE-EEeccC---ceeeeeeccceEEEEEE--ecCC-------------------CCeEEEecCCceEEE
Confidence 12222211 122222 36667778888888773 2222 668889999999999
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCC-ceEEEEeeCCCCeEEeccCcceeEEEecccccccccc
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSE-GVTACVTHPLNNTIVAGTKNSSLLVVSQKQQCTSDSM 486 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~~~~~~ 486 (489)
|+.. ++.+.+. |.. .|.++.+-++|. |++|+.||.|+||+..+....+.|
T Consensus 246 W~~~------------e~~q~I~-------------lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R~As~e 296 (745)
T KOG0301|consen 246 WKKD------------ECVQVIT-------------LPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDRKASDE 296 (745)
T ss_pred eecC------------ceEEEEe-------------cCccceEEEEEeeCCC-EEEeccCceEEEEEecccccCCHH
Confidence 9876 3455554 433 799999998888 788889999999999887766654
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-22 Score=184.73 Aligned_cols=245 Identities=16% Similarity=0.253 Sum_probs=177.5
Q ss_pred ccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEE
Q 037120 149 LLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLI 228 (489)
Q Consensus 149 ~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 228 (489)
.+|... |.+++|+|++. .+++++.| |.|++||+.... . .. .+..|...+..+.|+|+++ .++
T Consensus 6 ~~h~~~---i~~~~~~~~~~-~l~~~~~~-g~i~i~~~~~~~-----~---~~----~~~~~~~~i~~~~~~~~~~-~l~ 67 (289)
T cd00200 6 KGHTGG---VTCVAFSPDGK-LLATGSGD-GTIKVWDLETGE-----L---LR----TLKGHTGPVRDVAASADGT-YLA 67 (289)
T ss_pred cccCCC---EEEEEEcCCCC-EEEEeecC-cEEEEEEeeCCC-----c---EE----EEecCCcceeEEEECCCCC-EEE
Confidence 455555 99999999975 77777777 999999994321 1 11 1266888999999999997 899
Q ss_pred EEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEE
Q 037120 229 ASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSL 308 (489)
Q Consensus 229 s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l 308 (489)
+++.||.|++||+..++ ....+..|...+.++.|+|++.++++++.||.|++||+++++....+..|... +.++
T Consensus 68 ~~~~~~~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----i~~~ 141 (289)
T cd00200 68 SGSSDKTIRLWDLETGE--CVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDW----VNSV 141 (289)
T ss_pred EEcCCCeEEEEEcCccc--ceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCc----EEEE
Confidence 99999999999999765 44456688889999999999888888777999999999988887777777766 8888
Q ss_pred EeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCc
Q 037120 309 KLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRK 388 (489)
Q Consensus 309 ~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (489)
.|+|++..+..... ++ .+. +++...+....... .. ...+..
T Consensus 142 ~~~~~~~~l~~~~~----------------~~-~i~----------i~d~~~~~~~~~~~------~~------~~~i~~ 182 (289)
T cd00200 142 AFSPDGTFVASSSQ----------------DG-TIK----------LWDLRTGKCVATLT------GH------TGEVNS 182 (289)
T ss_pred EEcCcCCEEEEEcC----------------CC-cEE----------EEEccccccceeEe------cC------ccccce
Confidence 88887665543110 01 111 11111111111000 00 012234
Q ss_pred ceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccC
Q 037120 389 PSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTK 468 (489)
Q Consensus 389 ~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~ 468 (489)
+.|.+++..++ +++.|+.|++||+... +.+..+. .|...|.+++|+|++..+++++.
T Consensus 183 ~~~~~~~~~l~-~~~~~~~i~i~d~~~~----------~~~~~~~------------~~~~~i~~~~~~~~~~~~~~~~~ 239 (289)
T cd00200 183 VAFSPDGEKLL-SSSSDGTIKLWDLSTG----------KCLGTLR------------GHENGVNSVAFSPDGYLLASGSE 239 (289)
T ss_pred EEECCCcCEEE-EecCCCcEEEEECCCC----------ceecchh------------hcCCceEEEEEcCCCcEEEEEcC
Confidence 56666654444 4556999999999887 6666665 78889999999999889999999
Q ss_pred cceeEEEeccc
Q 037120 469 NSSLLVVSQKQ 479 (489)
Q Consensus 469 dg~i~v~~~~~ 479 (489)
||.|.+|..+.
T Consensus 240 ~~~i~i~~~~~ 250 (289)
T cd00200 240 DGTIRVWDLRT 250 (289)
T ss_pred CCcEEEEEcCC
Confidence 99999998763
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.9e-24 Score=202.26 Aligned_cols=183 Identities=13% Similarity=0.236 Sum_probs=140.5
Q ss_pred eeEEEECC-CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 99 ISALDFDC-KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 99 V~~~~fs~-~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
+..+.|.. +.++||+++..|.|-+||+...... .....+..|... |.+++|++...++|++|+.|
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rn-----------k~l~~f~EH~Rs---~~~ldfh~tep~iliSGSQD 155 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRN-----------KLLTVFNEHERS---ANKLDFHSTEPNILISGSQD 155 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccc-----------hhhhHhhhhccc---eeeeeeccCCccEEEecCCC
Confidence 44556653 3689999999999999999872110 111123446656 89999999999999999999
Q ss_pred CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCC
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHG 257 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~ 257 (489)
|+|++||++...+. .. +.+....|.+++|+|...+.|+++.+.|.+++||+|...+. ...+.+|.+
T Consensus 156 -g~vK~~DlR~~~S~--------~t----~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~-~~k~~AH~G 221 (839)
T KOG0269|consen 156 -GTVKCWDLRSKKSK--------ST----FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRC-EKKLTAHNG 221 (839)
T ss_pred -ceEEEEeeeccccc--------cc----ccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhH-HHHhhcccC
Confidence 99999999654332 11 25567799999999998889999999999999999987654 446679999
Q ss_pred ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc--cceeecCCccCCCCeeEEEeCCCC
Q 037120 258 TLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT--SAPFHNHKEVCHLPLTSLKLASML 314 (489)
Q Consensus 258 ~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~ 314 (489)
+|.|+.|+|++.+|++||.|++|+|||+.+.+. +.++.. . .||..|+|-|+.
T Consensus 222 pV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT--i---apv~rVkWRP~~ 275 (839)
T KOG0269|consen 222 PVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT--I---APVGRVKWRPAR 275 (839)
T ss_pred ceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee--c---ceeeeeeeccCc
Confidence 999999999999999999999999999987654 333321 1 236666666543
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.2e-23 Score=176.44 Aligned_cols=302 Identities=16% Similarity=0.167 Sum_probs=214.5
Q ss_pred ccccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 91 RRSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
.+..|..||..++-......+.+++.|.+.+||.++++.|... +.||.+. |.+++|++.+. +
T Consensus 143 e~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~--------------Y~GH~GS---VNsikfh~s~~-L 204 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLAT--------------YTGHTGS---VNSIKFHNSGL-L 204 (481)
T ss_pred hhcccccceeeehhhcCCcceeecccccceeEEeeccccceee--------------ecccccc---eeeEEeccccc-e
Confidence 4677889999999988888999999999999999999887762 3677777 99999999875 8
Q ss_pred EEEEecCCCEEEEEEec------cC------CCCC----------------ceeeeeceeeeeecCCcccCeeEEEEecC
Q 037120 171 VACASTRSNVVSIYDIG------YI------SDEP----------------VEVLKTRRSVTVVGSDVQKGLSDLAFSAV 222 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~------~~------~~~~----------------~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 222 (489)
+++++.| ++-.||... .. +++. ..--...+..+..+.+|...|.+..|...
T Consensus 205 ~lTaSGD-~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~g 283 (481)
T KOG0300|consen 205 LLTASGD-ETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAG 283 (481)
T ss_pred EEEccCC-cchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcC
Confidence 8888888 999999721 10 0000 00011345566778999999999999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-cccceeecCCccC
Q 037120 223 NTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGG-RTSAPFHNHKEVC 301 (489)
Q Consensus 223 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~-~~~~~~~~~~~~~ 301 (489)
++ .+++++.|.+..+||+++++ .+..+.+|....+.++-+|+.+++++.+.|.+.++||.|.. ..+..|++|.+.
T Consensus 284 g~-Q~vTaSWDRTAnlwDVEtge--~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdt- 359 (481)
T KOG0300|consen 284 GQ-QMVTASWDRTANLWDVETGE--VVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDT- 359 (481)
T ss_pred cc-eeeeeeccccceeeeeccCc--eeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccc-
Confidence 98 99999999999999999998 78888899999999999999999999999999999999953 238889999988
Q ss_pred CCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccc
Q 037120 302 HLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSA 381 (489)
Q Consensus 302 ~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (489)
|+++.|..+.+.+.. .++..+ +++++..-. ..+. ....+.
T Consensus 360 ---VTS~vF~~dd~vVSg------------------SDDrTv----------KvWdLrNMR-splA----TIRtdS---- 399 (481)
T KOG0300|consen 360 ---VTSVVFNTDDRVVSG------------------SDDRTV----------KVWDLRNMR-SPLA----TIRTDS---- 399 (481)
T ss_pred ---eeEEEEecCCceeec------------------CCCceE----------EEeeecccc-Ccce----eeecCC----
Confidence 999999887665532 111111 122211100 0000 000000
Q ss_pred cccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCC-
Q 037120 382 DQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLN- 460 (489)
Q Consensus 382 ~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~- 460 (489)
....+ -...|..+++.--++..|++||++.. .+..+..-.+ .+|..-|.|+||.-.-
T Consensus 400 ---~~NRv-avs~g~~iIAiPhDNRqvRlfDlnG~-----------RlaRlPrtsR-------qgHrRMV~c~AW~eehp 457 (481)
T KOG0300|consen 400 ---PANRV-AVSKGHPIIAIPHDNRQVRLFDLNGN-----------RLARLPRTSR-------QGHRRMVTCCAWLEEHP 457 (481)
T ss_pred ---cccee-EeecCCceEEeccCCceEEEEecCCC-----------ccccCCcccc-------cccceeeeeeeccccCc
Confidence 00000 01112434444445569999999865 2223321112 2899999999996443
Q ss_pred -CeEEeccCcceeEEEec
Q 037120 461 -NTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 461 -~~i~sgs~dg~i~v~~~ 477 (489)
..+.++|-|.++.=|..
T Consensus 458 ~cnLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 458 ACNLFTCGFDRMVAGWKI 475 (481)
T ss_pred ccccccccccceeeeeEe
Confidence 46889999999888864
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.3e-22 Score=170.38 Aligned_cols=276 Identities=12% Similarity=0.154 Sum_probs=185.8
Q ss_pred CCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 96 KPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
+.+|+.+.|+|.++.|+++++||++++||+....... . .-|..+ +.+++|.++. .+++|+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~--------~-------~~~~~p---lL~c~F~d~~--~~~~G~ 72 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL--------K-------FKHGAP---LLDCAFADES--TIVTGG 72 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh--------h-------eecCCc---eeeeeccCCc--eEEEec
Confidence 5679999999999999999999999999998731111 0 123334 9999999864 677788
Q ss_pred cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCC
Q 037120 176 TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGS 255 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h 255 (489)
.| |.|+.+|++..... .+..|..+|.+|.+.+-.. .+++||.|++|++||.|... +...+ ..
T Consensus 73 ~d-g~vr~~Dln~~~~~-------------~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~--~~~~~-d~ 134 (323)
T KOG1036|consen 73 LD-GQVRRYDLNTGNED-------------QIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKV--VVGTF-DQ 134 (323)
T ss_pred cC-ceEEEEEecCCcce-------------eeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccc--ccccc-cc
Confidence 77 99999999554322 1155889999999998776 99999999999999999733 23222 22
Q ss_pred CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEE
Q 037120 256 HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSID 335 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~ 335 (489)
...|.|+.. .++.|++|+.|..+.+||+|+........... -.-+++++++-|++.-++....+. . ..+.
T Consensus 135 ~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~--lkyqtR~v~~~pn~eGy~~sSieG-----R-VavE 204 (323)
T KOG1036|consen 135 GKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESS--LKYQTRCVALVPNGEGYVVSSIEG-----R-VAVE 204 (323)
T ss_pred CceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhcccc--ceeEEEEEEEecCCCceEEEeecc-----e-EEEE
Confidence 347777776 57889999999999999999976533222111 112378888888654332111000 0 1111
Q ss_pred e-CCC-----CCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEE
Q 037120 336 L-DPS-----CSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIH 409 (489)
Q Consensus 336 ~-~p~-----~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~ 409 (489)
| +++ .+|..-++... ........++..++|+|- -..++||+.||.|.
T Consensus 205 ~~d~s~~~~skkyaFkCHr~~--------------------------~~~~~~~yPVNai~Fhp~-~~tfaTgGsDG~V~ 257 (323)
T KOG1036|consen 205 YFDDSEEAQSKKYAFKCHRLS--------------------------EKDTEIIYPVNAIAFHPI-HGTFATGGSDGIVN 257 (323)
T ss_pred ccCCchHHhhhceeEEeeecc--------------------------cCCceEEEEeceeEeccc-cceEEecCCCceEE
Confidence 1 111 01111111100 000111133455666666 45678889999999
Q ss_pred EEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccC
Q 037120 410 LLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTK 468 (489)
Q Consensus 410 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~ 468 (489)
+||..+. +.+..+. .....|.+++|+-+|..||.++.
T Consensus 258 ~Wd~~~r----------Krl~q~~------------~~~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 258 IWDLFNR----------KRLKQLA------------KYETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred EccCcch----------hhhhhcc------------CCCCceEEEEeccCCCeEEEEec
Confidence 9999988 6776766 67778999999999999998864
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-24 Score=205.50 Aligned_cols=239 Identities=15% Similarity=0.265 Sum_probs=198.2
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+-.|...|.|+..-..++.+++|+.|..+-+|.+.. ..+...+.+|... |.+|.|++.. .+|
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k--------------p~~i~S~~~hesp---IeSl~f~~~E-~Ll 85 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK--------------PNAITSLTGHESP---IESLTFDTSE-RLL 85 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccC--------------CchhheeeccCCc---ceeeecCcch-hhh
Confidence 344556688888877889999999999999998876 2333346778887 9999999986 488
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++|+.+ |+|++||+... . .+.++.||...+.++.|+|.+. ++++|+.|+.+++||++... |...
T Consensus 86 aagsas-gtiK~wDleeA-----k-------~vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~G--c~~~ 149 (825)
T KOG0267|consen 86 AAGSAS-GTIKVWDLEEA-----K-------IVRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKG--CSHT 149 (825)
T ss_pred cccccC-Cceeeeehhhh-----h-------hhhhhhccccCcceeeeccceE-EeccccccccceehhhhccC--ceee
Confidence 888877 99999999322 1 2235689999999999999999 88999999999999999655 8888
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
+.+|...|.++.|+|+|++++.++.|.+++|||+..|+.+..|+.|.+. +.++.|+|.
T Consensus 150 ~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~----v~sle~hp~------------------ 207 (825)
T KOG0267|consen 150 YKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGK----VQSLEFHPL------------------ 207 (825)
T ss_pred ecCCcceeEEEeecCCCceeeccCCcceeeeeccccccccccccccccc----ccccccCch------------------
Confidence 8899999999999999999999999999999999999999999998866 555443321
Q ss_pred eEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEE
Q 037120 332 HSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLL 411 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vw 411 (489)
..++.+||.|+++++|
T Consensus 208 ----------------------------------------------------------------e~Lla~Gs~d~tv~f~ 223 (825)
T KOG0267|consen 208 ----------------------------------------------------------------EVLLAPGSSDRTVRFW 223 (825)
T ss_pred ----------------------------------------------------------------hhhhccCCCCceeeee
Confidence 4456789999999999
Q ss_pred eccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCccee
Q 037120 412 DFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSL 472 (489)
Q Consensus 412 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i 472 (489)
|+.+. +.+...+ +....|.+.+|.|++..+++|-+....
T Consensus 224 dletf----------e~I~s~~------------~~~~~v~~~~fn~~~~~~~~G~q~sl~ 262 (825)
T KOG0267|consen 224 DLETF----------EVISSGK------------PETDGVRSLAFNPDGKIVLSGEQISLS 262 (825)
T ss_pred cccee----------EEeeccC------------CccCCceeeeecCCceeeecCchhhhh
Confidence 99988 7777766 678899999999999988888765443
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-22 Score=177.80 Aligned_cols=263 Identities=14% Similarity=0.145 Sum_probs=196.4
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|...|.|+.|+.+|.+||||..+|.|+||...++...... . .+..+|.=+.|+|.. .+|
T Consensus 102 ltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~--------~---------~e~~dieWl~WHp~a-~il 163 (399)
T KOG0296|consen 102 LTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKL--------D---------QEVEDIEWLKWHPRA-HIL 163 (399)
T ss_pred ecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEe--------e---------cccCceEEEEecccc-cEE
Confidence 4567788999999999999999999999999999985444321 0 111125558999976 488
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++|+.| |.+.+|.+... ...+. +.||+.++++-.|.|+|+ .++++..||+|++||..++. .+..
T Consensus 164 lAG~~D-GsvWmw~ip~~--------~~~kv----~~Gh~~~ct~G~f~pdGK-r~~tgy~dgti~~Wn~ktg~--p~~~ 227 (399)
T KOG0296|consen 164 LAGSTD-GSVWMWQIPSQ--------ALCKV----MSGHNSPCTCGEFIPDGK-RILTGYDDGTIIVWNPKTGQ--PLHK 227 (399)
T ss_pred EeecCC-CcEEEEECCCc--------ceeeE----ecCCCCCcccccccCCCc-eEEEEecCceEEEEecCCCc--eeEE
Confidence 888888 99999999322 11233 389999999999999999 99999999999999999986 3322
Q ss_pred cc-CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceee--------cCCccCCCCeeEEEeCCCCcce---e-
Q 037120 252 ST-GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH--------NHKEVCHLPLTSLKLASMLEKI---G- 318 (489)
Q Consensus 252 ~~-~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~--------~~~~~~~~~v~~l~~~~~~~~i---~- 318 (489)
.. .......++.++..+..++.|..++.+++-...+|+.+.... .+... +.++.+.|....+ +
T Consensus 228 ~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~----~esve~~~~ss~lpL~A~ 303 (399)
T KOG0296|consen 228 ITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEEL----DESVESIPSSSKLPLAAC 303 (399)
T ss_pred ecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhh----hhhhhhcccccccchhhc
Confidence 22 224567899999999999999999999999988888755554 23333 5555555544433 1
Q ss_pred -ec-------------cccceeeccceeEEEeCCCCCeEEEEEecCC---ce----EEEEeeccceeeecCCCCCCcCCC
Q 037120 319 -TL-------------KAQSKIVSQEIHSIDLDPSCSYQLAFHLDDG---WS----GVLDVYNSRVSHVHCPPPAWLSDS 377 (489)
Q Consensus 319 -~~-------------~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~---w~----~~~~~~~~~~~~~~~~~~~~~~~~ 377 (489)
++ -+..-.+..+|..+.|.+ ..++++++.++. |. .+.-.|.||...+++. ..+++
T Consensus 304 G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f--~ls~~- 379 (399)
T KOG0296|consen 304 GSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDF--ALSPQ- 379 (399)
T ss_pred ccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEE--EEcCC-
Confidence 10 122234567899999988 789999988877 53 5667788888777654 33444
Q ss_pred CccccccCCCcceeecCCcEEEEeecCCCcEEEEecc
Q 037120 378 NNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFF 414 (489)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~ 414 (489)
..+++++|.|++.+|+++.
T Consensus 380 ------------------~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 380 ------------------KRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ------------------CcEEEEecCCCeEEEEecC
Confidence 7899999999999999874
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-23 Score=187.44 Aligned_cols=285 Identities=15% Similarity=0.162 Sum_probs=191.4
Q ss_pred CCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
|.+-|.++.+|...+++.||+. |.|+|||+...... ....+..+ . .....|.++...|++. -|++|
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k---------~PvsqLdc--l-~rdnyiRSckL~pdgr-tLivG 483 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK---------SPVSQLDC--L-NRDNYIRSCKLLPDGR-TLIVG 483 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC---------Cccccccc--c-CcccceeeeEecCCCc-eEEec
Confidence 4445889999999999999985 67999999862111 11111111 1 1122289999999997 45555
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccC
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 254 (489)
++- .++.|||+..........+ ..-.....+++.+||.+ +.++|..||.|.|||++... .++.+.+
T Consensus 484 Gea-stlsiWDLAapTprikael----------tssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~--~VrqfqG 549 (705)
T KOG0639|consen 484 GEA-STLSIWDLAAPTPRIKAEL----------TSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQT--LVRQFQG 549 (705)
T ss_pred ccc-ceeeeeeccCCCcchhhhc----------CCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccce--eeecccC
Confidence 555 8999999954322211111 11223567889999999 88888899999999999865 7888899
Q ss_pred CCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEE
Q 037120 255 SHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSI 334 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~ 334 (489)
|.+.+.||.++++|..|-+||-|++||.||+|.++.+.. |.-. ..|.+|.++|.+.
T Consensus 550 htDGascIdis~dGtklWTGGlDntvRcWDlregrqlqq---hdF~--SQIfSLg~cP~~d------------------- 605 (705)
T KOG0639|consen 550 HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQ---HDFS--SQIFSLGYCPTGD------------------- 605 (705)
T ss_pred CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhh---hhhh--hhheecccCCCcc-------------------
Confidence 999999999999999999999999999999999875333 2211 1155555555554
Q ss_pred EeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEecc
Q 037120 335 DLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFF 414 (489)
Q Consensus 335 ~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~ 414 (489)
++++... ++...++.....+...++....+. -.+.|.+. +.++++.+.|+-+..|...
T Consensus 606 -------WlavGMe-ns~vevlh~skp~kyqlhlheScV-------------LSlKFa~c-GkwfvStGkDnlLnawrtP 663 (705)
T KOG0639|consen 606 -------WLAVGME-NSNVEVLHTSKPEKYQLHLHESCV-------------LSLKFAYC-GKWFVSTGKDNLLNAWRTP 663 (705)
T ss_pred -------ceeeecc-cCcEEEEecCCccceeecccccEE-------------EEEEeccc-CceeeecCchhhhhhccCc
Confidence 4333222 221122222222221111111010 11122222 7788888999999999998
Q ss_pred CCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 415 PGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
.+ ..+...+ -...|+++..+-++++|+||+.|....||.
T Consensus 664 yG----------asiFqsk-------------E~SsVlsCDIS~ddkyIVTGSGdkkATVYe 702 (705)
T KOG0639|consen 664 YG----------ASIFQSK-------------ESSSVLSCDISFDDKYIVTGSGDKKATVYE 702 (705)
T ss_pred cc----------cceeecc-------------ccCcceeeeeccCceEEEecCCCcceEEEE
Confidence 88 5554443 567899999999999999999998888774
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-22 Score=181.92 Aligned_cols=266 Identities=18% Similarity=0.232 Sum_probs=186.9
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..|.|++-+|+|.+|+.|+..|.|++|.+.++.... .+ ..|... |+|+.|+-|+. ++++|+.
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~--------v~------~aHYQ~---ITcL~fs~dgs-~iiTgsk 143 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN--------VL------SAHYQS---ITCLKFSDDGS-HIITGSK 143 (476)
T ss_pred cceeeeecCCCceEEEeecccCcEEEEEeccccHHH--------HH------Hhhccc---eeEEEEeCCCc-EEEecCC
Confidence 459999999999999999999999999999966655 23 334444 99999999986 8889999
Q ss_pred CCCEEEEEEeccCCC-CCceeeeeceeeeeecCCcccCeeEEEEecCCC-cEEEEEeCCCcEEEEECCCCCcCceeeccC
Q 037120 177 RSNVVSIYDIGYISD-EPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT-SRLIASDTHGVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 177 d~g~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 254 (489)
| |.|.+|++..--. .......+... +.+|+-+|+++...+.+. ..++|+|.|.++++||+..+. .+..+ .
T Consensus 144 D-g~V~vW~l~~lv~a~~~~~~~p~~~----f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~--LLlti-~ 215 (476)
T KOG0646|consen 144 D-GAVLVWLLTDLVSADNDHSVKPLHI----FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV--LLLTI-T 215 (476)
T ss_pred C-ccEEEEEEEeecccccCCCccceee----eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce--eeEEE-e
Confidence 8 9999999853211 11122333333 499999999999887643 389999999999999999986 33222 3
Q ss_pred CCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEE
Q 037120 255 SHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSI 334 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~ 334 (489)
-...+.+++.+|-+..+++|+.+|.|.+.++.+... .... |..=.+++++..+.
T Consensus 216 fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~------~~~~----v~~k~~~~~~t~~~---------------- 269 (476)
T KOG0646|consen 216 FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSG------QSAG----VNQKGRHEENTQIN---------------- 269 (476)
T ss_pred cCCcceeEEEcccccEEEecCCcceEEeeehhcCCc------cccc----ccccccccccceee----------------
Confidence 357899999999999999999999999998875331 0111 11111222221111
Q ss_pred EeCCCCCeEEEEEecCCceEEEEeecccee--eecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEe
Q 037120 335 DLDPSCSYQLAFHLDDGWSGVLDVYNSRVS--HVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLD 412 (489)
Q Consensus 335 ~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd 412 (489)
.+.||.. .+.|. +.+.+ +.+|++|++||.++|||
T Consensus 270 -----------------------~~~Gh~~~~~ITcL--ais~D-------------------gtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 270 -----------------------VLVGHENESAITCL--AISTD-------------------GTLLLSGDEDGKVCVWD 305 (476)
T ss_pred -----------------------eeccccCCcceeEE--EEecC-------------------ccEEEeeCCCCCEEEEe
Confidence 1112222 22222 22223 77899999999999999
Q ss_pred ccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEe-ccCcceeEEEecccc
Q 037120 413 FFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVA-GTKNSSLLVVSQKQQ 480 (489)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~s-gs~dg~i~v~~~~~~ 480 (489)
+.+. +.++.+. ...++|+-+.+.|..+.+.. -.....+.++..|++
T Consensus 306 i~S~----------Q~iRtl~------------~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~lkr~ 352 (476)
T KOG0646|consen 306 IYSK----------QCIRTLQ------------TSKGPVTNLQINPLERGIILFEHKQPSLPNPHLKRM 352 (476)
T ss_pred cchH----------HHHHHHh------------hhccccceeEeeccccceecccccCccCCchHhhcc
Confidence 9999 8888876 56788999999887664443 344445555554443
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-23 Score=177.06 Aligned_cols=177 Identities=12% Similarity=0.288 Sum_probs=140.3
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|...|+++.|+|....|++|+.|++|++||+......... ..-... ..|.++.|+|.|. +|
T Consensus 168 lYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~------K~~qd~---------~~vrsiSfHPsGe-fl 231 (430)
T KOG0640|consen 168 LYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAF------KVFQDT---------EPVRSISFHPSGE-FL 231 (430)
T ss_pred hhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHH------HHhhcc---------ceeeeEeecCCCc-eE
Confidence 5557778999999999999999999999999999873332211 111112 2299999999997 44
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
+.|.. ..++++||+++. +.+.... +-.+|++.|+++.+++.+. +.+|++.||.|++||--+++ |++.
T Consensus 232 lvgTd-Hp~~rlYdv~T~-----Qcfvsan----Pd~qht~ai~~V~Ys~t~~-lYvTaSkDG~IklwDGVS~r--Cv~t 298 (430)
T KOG0640|consen 232 LVGTD-HPTLRLYDVNTY-----QCFVSAN----PDDQHTGAITQVRYSSTGS-LYVTASKDGAIKLWDGVSNR--CVRT 298 (430)
T ss_pred EEecC-CCceeEEeccce-----eEeeecC----cccccccceeEEEecCCcc-EEEEeccCCcEEeeccccHH--HHHH
Confidence 45554 489999999432 3322222 2377999999999999999 99999999999999987766 7766
Q ss_pred cc-CCC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecC
Q 037120 252 ST-GSH-GTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNH 297 (489)
Q Consensus 252 ~~-~h~-~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~ 297 (489)
+. +|. ..|.+..|..+|+++++.|.|..+++|.+.+++.+..+.+.
T Consensus 299 ~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 299 IGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGA 346 (430)
T ss_pred HHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecC
Confidence 65 554 56899999999999999999999999999999998888764
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=181.27 Aligned_cols=166 Identities=16% Similarity=0.214 Sum_probs=132.1
Q ss_pred cCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 94 FGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
.|...|.+++.++||+|||+|+.|..|.||+.++.+.+. .+.+|.+. |.+++|-... ..+++
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~--------------~~~ghr~~---V~~L~fr~gt-~~lys 261 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVK--------------VFKGHRGA---VSSLAFRKGT-SELYS 261 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhh--------------cccccccc---eeeeeeecCc-cceee
Confidence 344559999999999999999999999999999944443 35778888 8889998654 46677
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST 253 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 253 (489)
++.| ++|++|++.. ..++.++.||.+.|.+|.-..-.. .+..|+.|+++++|++.... -.++.
T Consensus 262 ~s~D-rsvkvw~~~~------------~s~vetlyGHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~ees---qlifr 324 (479)
T KOG0299|consen 262 ASAD-RSVKVWSIDQ------------LSYVETLYGHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPEES---QLIFR 324 (479)
T ss_pred eecC-CceEEEehhH------------hHHHHHHhCCccceeeechhcccc-eEEeccccceeEEEeccccc---eeeee
Confidence 7777 9999999932 224445699999999998887776 66666699999999995433 22456
Q ss_pred CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceee
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~ 295 (489)
+|.+.+-|++|-. ..++++|+.+|.|.||++.+.+.+.+..
T Consensus 325 g~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~ 365 (479)
T KOG0299|consen 325 GGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSR 365 (479)
T ss_pred CCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEee
Confidence 8899999999975 4567999999999999999877766655
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-21 Score=190.34 Aligned_cols=171 Identities=19% Similarity=0.193 Sum_probs=129.6
Q ss_pred cccCCCceeEEEECCC-CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDCK-GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~-g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..|...|.+++|+|+ +.+||+|+.||+|+|||+.+....... ...+...+.+|... |.+++|+|++..+
T Consensus 70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~------i~~p~~~L~gH~~~---V~sVaf~P~g~~i 140 (568)
T PTZ00420 70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE------IKDPQCILKGHKKK---ISIIDWNPMNYYI 140 (568)
T ss_pred EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc------cccceEEeecCCCc---EEEEEECCCCCeE
Confidence 5567778999999997 789999999999999999763211000 01122234557666 9999999998878
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
+++++.| ++|+|||++... .+ ..+ . |...|.+++|+|+|. +|++++.|+.|+|||+++++ .+.
T Consensus 141 LaSgS~D-gtIrIWDl~tg~-----~~---~~i----~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~--~i~ 203 (568)
T PTZ00420 141 MCSSGFD-SFVNIWDIENEK-----RA---FQI----N-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQE--IAS 203 (568)
T ss_pred EEEEeCC-CeEEEEECCCCc-----EE---EEE----e-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCc--EEE
Confidence 8888888 999999995331 11 111 2 456899999999999 99999999999999999876 556
Q ss_pred eccCCCCceeEE-----EEeecCCEEEEEeCCC----eEEEEEcCCC
Q 037120 251 LSTGSHGTLNSI-----QLHAENQIIFAAGKHG----SIYLWDLRGG 288 (489)
Q Consensus 251 ~~~~h~~~v~~~-----~~~p~~~~l~~~~~dg----~i~lwd~~~~ 288 (489)
.+.+|.+.+.+. .|++++.+++++|.|+ .|+|||+++.
T Consensus 204 tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 204 SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred EEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC
Confidence 677888765443 3458889999988764 7999999963
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-21 Score=175.69 Aligned_cols=249 Identities=17% Similarity=0.172 Sum_probs=183.6
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
|.+|...|+.+.|+|+...+++++.|-.|+||......+.. ....|... |+.+..+|.+. .|
T Consensus 257 ~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~--------------~~~~h~~~---V~~ls~h~tge-Yl 318 (506)
T KOG0289|consen 257 LKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPT--------------SSRPHEEP---VTGLSLHPTGE-YL 318 (506)
T ss_pred ccCcceEEEEEEeccchhheeecCCcceEEeeccccccCcc--------------cccccccc---ceeeeeccCCc-EE
Confidence 56677779999999999999999999999999987733222 12345555 88899999997 56
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++.| ++..+.|++.+. .+.... -....-.+++.+|+|||. +|.+|..|+.|+|||+.++. .+..
T Consensus 319 lsAs~d-~~w~Fsd~~~g~-----~lt~vs-----~~~s~v~~ts~~fHpDgL-ifgtgt~d~~vkiwdlks~~--~~a~ 384 (506)
T KOG0289|consen 319 LSASND-GTWAFSDISSGS-----QLTVVS-----DETSDVEYTSAAFHPDGL-IFGTGTPDGVVKIWDLKSQT--NVAK 384 (506)
T ss_pred EEecCC-ceEEEEEccCCc-----EEEEEe-----eccccceeEEeeEcCCce-EEeccCCCceEEEEEcCCcc--cccc
Confidence 667766 999999995442 221111 011223689999999999 99999999999999999876 5567
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
+.+|+++|.+++|+.+|-++++++.|+.|++||+|..+..+++...... ++
T Consensus 385 Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-----------------------------~v 435 (506)
T KOG0289|consen 385 FPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-----------------------------EV 435 (506)
T ss_pred CCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-----------------------------cc
Confidence 7899999999999999999999999999999999998766666532211 22
Q ss_pred eEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEE
Q 037120 332 HSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLL 411 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vw 411 (489)
.++.|++. |.|++.++.|=.|+++
T Consensus 436 ~s~~fD~S--------------------------------------------------------Gt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 436 NSLSFDQS--------------------------------------------------------GTYLGIAGSDLQVYIC 459 (506)
T ss_pred eeEEEcCC--------------------------------------------------------CCeEEeecceeEEEEE
Confidence 33334333 3444444455455555
Q ss_pred eccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 412 DFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 412 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
+-.+. .+ ..+..+. .|.+..+++.|.-...+++++|.|..++|++.
T Consensus 460 ~k~~k-~W-------~~~~~~~------------~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 460 KKKTK-SW-------TEIKELA------------DHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ecccc-cc-------eeeehhh------------hcccccceeeecccceEEeeccchhheEEeec
Confidence 43332 00 2333344 68888999999988899999999999999864
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-22 Score=172.34 Aligned_cols=292 Identities=13% Similarity=0.166 Sum_probs=190.2
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
-.|+.|++-|.+||+|+.||.|.|||+.+..... .+.+|... |++++|++++. +|++++.|
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar--------------~lsaH~~p---i~sl~WS~dgr-~LltsS~D- 86 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR--------------MLSAHVRP---ITSLCWSRDGR-KLLTSSRD- 86 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh--------------hhhccccc---eeEEEecCCCC-EeeeecCC-
Confidence 6799999999999999999999999999844322 22445555 99999999996 78888888
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc--CCC
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST--GSH 256 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~h~ 256 (489)
..|.+||+..+. .++..+ -..+|+.+.|+|...+.++.+-.+..-.+-++..+...++..-. .-+
T Consensus 87 ~si~lwDl~~gs-----~l~rir--------f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln 153 (405)
T KOG1273|consen 87 WSIKLWDLLKGS-----PLKRIR--------FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLN 153 (405)
T ss_pred ceeEEEeccCCC-----ceeEEE--------ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccc
Confidence 999999995543 222222 23589999999988877777766666667777654332321111 111
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCC-ccCCCCeeEEEeCCCCcceeeccccceeeccceeEEE
Q 037120 257 GTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHK-EVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSID 335 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~ 335 (489)
..-.+..|++.|+++++|...|.+.++|..+.+++..++-.. .. |.++.++..
T Consensus 154 ~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~----IK~I~~s~~---------------------- 207 (405)
T KOG1273|consen 154 SSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQA----IKQIIVSRK---------------------- 207 (405)
T ss_pred cccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechhee----eeEEEEecc----------------------
Confidence 122344689999999999999999999999988776665322 22 445544444
Q ss_pred eCCCCCeEEEEEecCCceEEEEeeccce-eee---cCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEE
Q 037120 336 LDPSCSYQLAFHLDDGWSGVLDVYNSRV-SHV---HCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLL 411 (489)
Q Consensus 336 ~~p~~~~~~~~~~~~~w~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vw 411 (489)
+++++..+.|. ++.+|...- ... ..+.+..... .......-+..+|+.+|..++++.+....++||
T Consensus 208 ----g~~liiNtsDR----vIR~ye~~di~~~~r~~e~e~~~K~q--DvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIW 277 (405)
T KOG1273|consen 208 ----GRFLIINTSDR----VIRTYEISDIDDEGRDGEVEPEHKLQ--DVVNKLQWKKCCFSGDGEYVCAGSARAHALYIW 277 (405)
T ss_pred ----CcEEEEecCCc----eEEEEehhhhcccCccCCcChhHHHH--HHHhhhhhhheeecCCccEEEeccccceeEEEE
Confidence 44444433332 233332110 000 0000000000 000001123345666555555555555689999
Q ss_pred eccCCCCCCeeeccCcccchhhHhhhhcccCCcccCC-CceEEEEeeCCCCeEEeccCcceeEEEeccccc
Q 037120 412 DFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLS-EGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQC 481 (489)
Q Consensus 412 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~ 481 (489)
.-..+ ..++.+. |-. +....|.|||..+.|++- ..|.+.+|++....
T Consensus 278 E~~~G----------sLVKILh------------G~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~e 325 (405)
T KOG1273|consen 278 EKSIG----------SLVKILH------------GTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVE 325 (405)
T ss_pred ecCCc----------ceeeeec------------CCchhheeecccccceeeeeec-cCCceEEEEeeccc
Confidence 99999 8888777 665 678999999999999988 77999999876543
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-22 Score=177.35 Aligned_cols=195 Identities=16% Similarity=0.238 Sum_probs=148.0
Q ss_pred ccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCC-----------CCCCCCCcccccccccCCCCCCceeEE
Q 037120 93 SFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNG-----------TLPGVGLKEDQSKHLLHIPLPQQLDAV 161 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~-----------~~~~~g~~~~~~~~~~h~~~~~~V~~v 161 (489)
.+|+.+|-+++..++|..+++|+.|..|.||+.+.......+ .....|.-.+...+.||+.. |.+|
T Consensus 190 ~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~---Vs~V 266 (423)
T KOG0313|consen 190 RGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEP---VSSV 266 (423)
T ss_pred cccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccc---eeeE
Confidence 367778999999999999999999999999994332111100 11112344555667789998 8999
Q ss_pred EeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEEC
Q 037120 162 RWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDR 241 (489)
Q Consensus 162 ~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~ 241 (489)
.|++. ..+.+++.| .+|+.||+..+... ..+. -...++++..+|... +|++|+.|..+++||.
T Consensus 267 ~w~d~--~v~yS~SwD-HTIk~WDletg~~~--~~~~-----------~~ksl~~i~~~~~~~-Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 267 VWSDA--TVIYSVSWD-HTIKVWDLETGGLK--STLT-----------TNKSLNCISYSPLSK-LLASGSSDRHIRLWDP 329 (423)
T ss_pred EEcCC--CceEeeccc-ceEEEEEeecccce--eeee-----------cCcceeEeecccccc-eeeecCCCCceeecCC
Confidence 99984 478888888 99999999554322 1111 224789999999888 9999999999999999
Q ss_pred CCCCcC-ceeeccCCCCceeEEEEeecCCEEE-EEeCCCeEEEEEcCCCc-ccceeecCCccCCCCeeEEEeC
Q 037120 242 RVGVLP-SLELSTGSHGTLNSIQLHAENQIIF-AAGKHGSIYLWDLRGGR-TSAPFHNHKEVCHLPLTSLKLA 311 (489)
Q Consensus 242 ~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~-~~~~dg~i~lwd~~~~~-~~~~~~~~~~~~~~~v~~l~~~ 311 (489)
|++... +.+.+.+|++.|.++.|+|.+.+++ +|+.|+++++||+|+.+ .++.+.+|.+. |-++.|.
T Consensus 330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK----vl~vdW~ 398 (423)
T KOG0313|consen 330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK----VLSVDWN 398 (423)
T ss_pred CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce----EEEEecc
Confidence 998544 4556779999999999999887655 55669999999999977 58888887655 5555443
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-23 Score=179.96 Aligned_cols=207 Identities=12% Similarity=0.209 Sum_probs=168.7
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
+.|..|+||++ .|++|+.| |-|.+||...++-...-..+....+ .-|.++|.++.|+.|.. ++++|+.||.|+
T Consensus 216 ~EcA~FSPDgq-yLvsgSvD-GFiEVWny~~GKlrKDLkYQAqd~f----MMmd~aVlci~FSRDsE-MlAsGsqDGkIK 288 (508)
T KOG0275|consen 216 VECARFSPDGQ-YLVSGSVD-GFIEVWNYTTGKLRKDLKYQAQDNF----MMMDDAVLCISFSRDSE-MLASGSQDGKIK 288 (508)
T ss_pred hhheeeCCCCc-eEeecccc-ceeeeehhccchhhhhhhhhhhcce----eecccceEEEeecccHH-HhhccCcCCcEE
Confidence 78899999996 88899998 9999999965543311111122222 44778999999999999 999999999999
Q ss_pred EEECCCCCcCceeecc-CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcc
Q 037120 238 IWDRRVGVLPSLELST-GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEK 316 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 316 (489)
+|.++++. |++.+. +|+..|+|+.|+.|+..+++++.|.++++--+.+|++++.|.+|... |+...|.+|
T Consensus 289 vWri~tG~--ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSy----vn~a~ft~d--- 359 (508)
T KOG0275|consen 289 VWRIETGQ--CLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSY----VNEATFTDD--- 359 (508)
T ss_pred EEEEecch--HHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCcccc----ccceEEcCC---
Confidence 99999998 888877 99999999999999999999999999999999999999999999865 444433322
Q ss_pred eeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCc
Q 037120 317 IGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNS 396 (489)
Q Consensus 317 i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (489)
+
T Consensus 360 -------------------------------------------------------------------------------G 360 (508)
T KOG0275|consen 360 -------------------------------------------------------------------------------G 360 (508)
T ss_pred -------------------------------------------------------------------------------C
Confidence 5
Q ss_pred EEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCC-eEEeccCcceeEEE
Q 037120 397 IYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN-TIVAGTKNSSLLVV 475 (489)
Q Consensus 397 ~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~-~i~sgs~dg~i~v~ 475 (489)
.+++++|.||+|+||+..+. +++..+... +..-+|+.+-.-|.++ .++.|....++.|+
T Consensus 361 ~~iisaSsDgtvkvW~~Ktt----------eC~~Tfk~~----------~~d~~vnsv~~~PKnpeh~iVCNrsntv~im 420 (508)
T KOG0275|consen 361 HHIISASSDGTVKVWHGKTT----------ECLSTFKPL----------GTDYPVNSVILLPKNPEHFIVCNRSNTVYIM 420 (508)
T ss_pred CeEEEecCCccEEEecCcch----------hhhhhccCC----------CCcccceeEEEcCCCCceEEEEcCCCeEEEE
Confidence 66788899999999999998 887776622 5667899999988774 88888888888886
Q ss_pred eccc
Q 037120 476 SQKQ 479 (489)
Q Consensus 476 ~~~~ 479 (489)
.-..
T Consensus 421 n~qG 424 (508)
T KOG0275|consen 421 NMQG 424 (508)
T ss_pred eccc
Confidence 4433
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=168.59 Aligned_cols=216 Identities=13% Similarity=0.169 Sum_probs=160.6
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEec--CCCcEEEEEeCCCc
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSA--VNTSRLIASDTHGV 235 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~l~s~s~dg~ 235 (489)
|..+...-.+. .|++++.| ++|+|+.++.... .....+|.||.++|+.++|-. .|. +|++++.||.
T Consensus 14 IHda~lDyygk-rlATcsSD-~tVkIf~v~~n~~---------s~ll~~L~Gh~GPVwqv~wahPk~G~-iLAScsYDgk 81 (299)
T KOG1332|consen 14 IHDAQLDYYGK-RLATCSSD-GTVKIFEVRNNGQ---------SKLLAELTGHSGPVWKVAWAHPKFGT-ILASCSYDGK 81 (299)
T ss_pred hhHhhhhhhcc-eeeeecCC-ccEEEEEEcCCCC---------ceeeeEecCCCCCeeEEeecccccCc-EeeEeecCce
Confidence 44455554554 78888888 9999999954432 123445699999999999965 566 9999999999
Q ss_pred EEEEECCCCCcCceeeccCCCCceeEEEEeec--CCEEEEEeCCCeEEEEEcCCC-cc--cceeecCCccCCCCeeEEEe
Q 037120 236 VNIWDRRVGVLPSLELSTGSHGTLNSIQLHAE--NQIIFAAGKHGSIYLWDLRGG-RT--SAPFHNHKEVCHLPLTSLKL 310 (489)
Q Consensus 236 i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~l~~~~~dg~i~lwd~~~~-~~--~~~~~~~~~~~~~~v~~l~~ 310 (489)
|.||.-..+..........|+..|++++|.|. |-.|+++++||.|.|.+.+.. .- .+....|.-. |++++|
T Consensus 82 VIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~G----vnsVsw 157 (299)
T KOG1332|consen 82 VIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIG----VNSVSW 157 (299)
T ss_pred EEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccc----cceeee
Confidence 99999888765444456699999999999986 567888899999999998874 11 4445577766 888888
Q ss_pred CCC---CcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCC
Q 037120 311 ASM---LEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLR 387 (489)
Q Consensus 311 ~~~---~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (489)
.|. |..+.. + ...
T Consensus 158 apa~~~g~~~~~--------------------~---------------------------------~~~----------- 173 (299)
T KOG1332|consen 158 APASAPGSLVDQ--------------------G---------------------------------PAA----------- 173 (299)
T ss_pred cCcCCCcccccc--------------------C---------------------------------ccc-----------
Confidence 875 211110 0 000
Q ss_pred cceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCC----CeE
Q 037120 388 KPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLN----NTI 463 (489)
Q Consensus 388 ~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~----~~i 463 (489)
.-+.+++|+.|+.|+||++..+. . .+...+. +|.+.|..+||.|.- ..|
T Consensus 174 -------~~krlvSgGcDn~VkiW~~~~~~-w-------~~e~~l~------------~H~dwVRDVAwaP~~gl~~s~i 226 (299)
T KOG1332|consen 174 -------KVKRLVSGGCDNLVKIWKFDSDS-W-------KLERTLE------------GHKDWVRDVAWAPSVGLPKSTI 226 (299)
T ss_pred -------ccceeeccCCccceeeeecCCcc-h-------hhhhhhh------------hcchhhhhhhhccccCCCceee
Confidence 03568899999999999998760 0 1122345 999999999999976 489
Q ss_pred EeccCcceeEEEecccc
Q 037120 464 VAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 464 ~sgs~dg~i~v~~~~~~ 480 (489)
|+||+||.+.||....+
T Consensus 227 AS~SqDg~viIwt~~~e 243 (299)
T KOG1332|consen 227 ASCSQDGTVIIWTKDEE 243 (299)
T ss_pred EEecCCCcEEEEEecCc
Confidence 99999999999988743
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-22 Score=168.28 Aligned_cols=243 Identities=15% Similarity=0.152 Sum_probs=172.5
Q ss_pred cccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEE
Q 037120 148 HLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRL 227 (489)
Q Consensus 148 ~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 227 (489)
..+|... |.+|+|+.+|. .+++|+.| +++.+|++... ..+. .. .+.+|.+.|-.++|+|..+.+|
T Consensus 16 ~~~~~~~---v~Sv~wn~~g~-~lasgs~d-ktv~v~n~e~~-----r~~~-~~----~~~gh~~svdql~w~~~~~d~~ 80 (313)
T KOG1407|consen 16 LQGHVQK---VHSVAWNCDGT-KLASGSFD-KTVSVWNLERD-----RFRK-EL----VYRGHTDSVDQLCWDPKHPDLF 80 (313)
T ss_pred hhhhhhc---ceEEEEcccCc-eeeecccC-CceEEEEecch-----hhhh-hh----cccCCCcchhhheeCCCCCcce
Confidence 3556666 88899999996 88888888 99999999322 1111 11 2388999999999999999899
Q ss_pred EEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeE
Q 037120 228 IASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTS 307 (489)
Q Consensus 228 ~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~ 307 (489)
++++.|.+|++||+++++ +...... +..-.-+.|+|+|.++++++.|..|.+.|.++.+.+...+- ... +..
T Consensus 81 atas~dk~ir~wd~r~~k--~~~~i~~-~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e----~ne 152 (313)
T KOG1407|consen 81 ATASGDKTIRIWDIRSGK--CTARIET-KGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFE----VNE 152 (313)
T ss_pred EEecCCceEEEEEeccCc--EEEEeec-cCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcc-cce----eee
Confidence 999999999999999987 5544332 34445689999999999999999999999999876555442 222 666
Q ss_pred EEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCC
Q 037120 308 LKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLR 387 (489)
Q Consensus 308 l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (489)
+.|+.++.++.--.. ...|.-+.+ |.= +.+...+.|...-.|+ .|.++
T Consensus 153 ~~w~~~nd~Fflt~G-----lG~v~ILsy-psL-------------kpv~si~AH~snCicI--~f~p~----------- 200 (313)
T KOG1407|consen 153 ISWNNSNDLFFLTNG-----LGCVEILSY-PSL-------------KPVQSIKAHPSNCICI--EFDPD----------- 200 (313)
T ss_pred eeecCCCCEEEEecC-----CceEEEEec-ccc-------------ccccccccCCcceEEE--EECCC-----------
Confidence 777766554421000 000111111 000 0111122333332333 45555
Q ss_pred cceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEecc
Q 037120 388 KPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGT 467 (489)
Q Consensus 388 ~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs 467 (489)
++|+++||.|..+-+||+..- -.+..+. -|.=+|..++|+-++++||+||
T Consensus 201 --------GryfA~GsADAlvSLWD~~EL----------iC~R~is------------RldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 201 --------GRYFATGSADALVSLWDVDEL----------ICERCIS------------RLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred --------CceEeeccccceeeccChhHh----------hhheeec------------cccCceEEEEeccCcceeeccC
Confidence 889999999999999999877 5666666 7888999999999999999999
Q ss_pred CcceeEEE
Q 037120 468 KNSSLLVV 475 (489)
Q Consensus 468 ~dg~i~v~ 475 (489)
+|-.|=|-
T Consensus 251 EDh~IDIA 258 (313)
T KOG1407|consen 251 EDHFIDIA 258 (313)
T ss_pred ccceEEeE
Confidence 99988763
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.4e-22 Score=171.33 Aligned_cols=247 Identities=10% Similarity=0.156 Sum_probs=162.8
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
|.+|+|+|....++++++.| |+||+|++.... .+.+ +. ...|.++|.+++|+.+|. .+++|+.|+.++
T Consensus 30 IS~l~FSP~~~~~~~A~SWD-~tVR~wevq~~g-----~~~~-ka----~~~~~~PvL~v~Wsddgs-kVf~g~~Dk~~k 97 (347)
T KOG0647|consen 30 ISALAFSPQADNLLAAGSWD-GTVRIWEVQNSG-----QLVP-KA----QQSHDGPVLDVCWSDDGS-KVFSGGCDKQAK 97 (347)
T ss_pred hheeEeccccCceEEecccC-CceEEEEEecCC-----cccc-hh----hhccCCCeEEEEEccCCc-eEEeeccCCceE
Confidence 89999999777888899999 999999995321 1111 11 166889999999999998 999999999999
Q ss_pred EEECCCCCcCceeeccCCCCceeEEEEeecCC--EEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCc
Q 037120 238 IWDRRVGVLPSLELSTGSHGTLNSIQLHAENQ--IIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLE 315 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~--~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 315 (489)
+||+.+++ ......|.++|.++.|-+... .|++|+.|.+|+.||+|....+.++...+ . +.++..-.
T Consensus 98 ~wDL~S~Q---~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-R----vYa~Dv~~--- 166 (347)
T KOG0647|consen 98 LWDLASGQ---VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-R----VYAADVLY--- 166 (347)
T ss_pred EEEccCCC---eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-e----eeehhccC---
Confidence 99999986 335668999999999987666 78888999999999999877776665422 1 23221110
Q ss_pred ceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCC
Q 037120 316 KIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTN 395 (489)
Q Consensus 316 ~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (489)
++.-++ -.++.++++.+.+.-...-.+... .....|.++-..+.
T Consensus 167 --------------pm~vVa--ta~r~i~vynL~n~~te~k~~~Sp--------------------Lk~Q~R~va~f~d~ 210 (347)
T KOG0647|consen 167 --------------PMAVVA--TAERHIAVYNLENPPTEFKRIESP--------------------LKWQTRCVACFQDK 210 (347)
T ss_pred --------------ceeEEE--ecCCcEEEEEcCCCcchhhhhcCc--------------------ccceeeEEEEEecC
Confidence 111111 123334444443331100000000 00112333444444
Q ss_pred cEEEEeecCCCcEEEEeccCCCC-----CCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcc
Q 037120 396 SIYAVGSSSDHGIHLLDFFPGSS-----SPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNS 470 (489)
Q Consensus 396 ~~~l~sgs~d~~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg 470 (489)
..+ +-||-.|.+-|-.+..+.. .+||...+... +.--.|++|+|||.-..|+|.|.||
T Consensus 211 ~~~-alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~----------------~~VYaVNsi~FhP~hgtlvTaGsDG 273 (347)
T KOG0647|consen 211 DGF-ALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVN----------------DDVYAVNSIAFHPVHGTLVTAGSDG 273 (347)
T ss_pred Cce-EeeeecceEEEEecCCCCccCceeEEEeccCCCCC----------------CceEEecceEeecccceEEEecCCc
Confidence 555 4567889888888876511 12333221110 1123699999999999999999999
Q ss_pred eeEEEecccc
Q 037120 471 SLLVVSQKQQ 480 (489)
Q Consensus 471 ~i~v~~~~~~ 480 (489)
++.+|...-+
T Consensus 274 tf~FWDkdar 283 (347)
T KOG0647|consen 274 TFSFWDKDAR 283 (347)
T ss_pred eEEEecchhh
Confidence 9999976543
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-20 Score=162.78 Aligned_cols=275 Identities=13% Similarity=0.140 Sum_probs=178.7
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC-CCCEEEEEe
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA-NQDEVACAS 175 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~-~~~~l~s~~ 175 (489)
.-|.|+.|++.|+.+|+|+.|++|+|||.... . |...-...+..|.+. |..|.|.+. -..++++++
T Consensus 14 DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~----s------~~W~~Ts~Wrah~~S---i~rV~WAhPEfGqvvA~cS 80 (361)
T KOG2445|consen 14 DLIHDVSFDFYGRRMATCSSDQTVKIWDSTSD----S------GTWSCTSSWRAHDGS---IWRVVWAHPEFGQVVATCS 80 (361)
T ss_pred ceeeeeeecccCceeeeccCCCcEEEEeccCC----C------CceEEeeeEEecCCc---EEEEEecCccccceEEEEe
Confidence 34999999999999999999999999997541 1 245556667788888 888999643 334889999
Q ss_pred cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCC-cEEEEEeCCCcEEEEECCCCCc----Ccee
Q 037120 176 TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT-SRLIASDTHGVVNIWDRRVGVL----PSLE 250 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~----~~~~ 250 (489)
.| +++.||.-.....+. .. .......++......|++|+|.|... ..+++++.||.++||+.-.... ....
T Consensus 81 ~D-rtv~iWEE~~~~~~~-~~--~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~ 156 (361)
T KOG2445|consen 81 YD-RTVSIWEEQEKSEEA-HG--RRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQH 156 (361)
T ss_pred cC-Cceeeeeeccccccc-cc--ceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhh
Confidence 99 999999863111110 00 01112233466778999999999754 3789999999999998754311 1111
Q ss_pred ec-------cCCCCceeEEEEeec---CCEEEEEeCC-----CeEEEEEcCCCc----ccceeecCCccCCCCeeEEEeC
Q 037120 251 LS-------TGSHGTLNSIQLHAE---NQIIFAAGKH-----GSIYLWDLRGGR----TSAPFHNHKEVCHLPLTSLKLA 311 (489)
Q Consensus 251 ~~-------~~h~~~v~~~~~~p~---~~~l~~~~~d-----g~i~lwd~~~~~----~~~~~~~~~~~~~~~v~~l~~~ 311 (489)
.+ ..+..+..|+.|+|. .++|++|+.+ +.++||....+. .+.++.+|... |++++|.
T Consensus 157 Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dp----I~di~wA 232 (361)
T KOG2445|consen 157 EIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDP----IRDISWA 232 (361)
T ss_pred hhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCc----ceeeeec
Confidence 11 135667889999974 4456666554 378888765432 14455555544 6666666
Q ss_pred CCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCccee
Q 037120 312 SMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSW 391 (489)
Q Consensus 312 ~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (489)
|.-.. .
T Consensus 233 Pn~Gr-----------------------------------------------------------~--------------- 238 (361)
T KOG2445|consen 233 PNIGR-----------------------------------------------------------S--------------- 238 (361)
T ss_pred cccCC-----------------------------------------------------------c---------------
Confidence 53110 0
Q ss_pred ecCCcEEEEeecCCCcEEEEeccCCCCCC--eeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCc
Q 037120 392 LSTNSIYAVGSSSDHGIHLLDFFPGSSSP--SHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKN 469 (489)
Q Consensus 392 ~~~~~~~l~sgs~d~~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~d 469 (489)
-.+++.++.|| |+||.+....... ..+........++ ......+-+|.+.|..+.|.-.|.+|++.|.|
T Consensus 239 ----y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~----v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdD 309 (361)
T KOG2445|consen 239 ----YHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLP----VEKVSELDDHNGEVWRVRWNMTGTILSSTGDD 309 (361)
T ss_pred ----eeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccc----eEEeeeccCCCCceEEEEEeeeeeEEeecCCC
Confidence 33566777888 9999887531000 0000000000000 00111233899999999999999999999999
Q ss_pred ceeEEE
Q 037120 470 SSLLVV 475 (489)
Q Consensus 470 g~i~v~ 475 (489)
|++++|
T Consensus 310 G~VRLW 315 (361)
T KOG2445|consen 310 GCVRLW 315 (361)
T ss_pred ceeeeh
Confidence 999997
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=174.57 Aligned_cols=245 Identities=16% Similarity=0.203 Sum_probs=167.5
Q ss_pred ccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEE
Q 037120 149 LLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLI 228 (489)
Q Consensus 149 ~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 228 (489)
..|+.+ |.-+.|+++|. .|++++.| .+.-+|++.... .+ ...+++.+|..+|..+.|+||+. +++
T Consensus 221 ~~htdE---VWfl~FS~nGk-yLAsaSkD-~Taiiw~v~~d~-----~~----kl~~tlvgh~~~V~yi~wSPDdr-yLl 285 (519)
T KOG0293|consen 221 QDHTDE---VWFLQFSHNGK-YLASASKD-STAIIWIVVYDV-----HF----KLKKTLVGHSQPVSYIMWSPDDR-YLL 285 (519)
T ss_pred hhCCCc---EEEEEEcCCCe-eEeeccCC-ceEEEEEEecCc-----ce----eeeeeeecccCceEEEEECCCCC-eEE
Confidence 447777 77799999996 88899988 999999994321 12 23455699999999999999999 999
Q ss_pred EEeCCCcEEEEECCCCCcCceeec-cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeE
Q 037120 229 ASDTHGVVNIWDRRVGVLPSLELS-TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTS 307 (489)
Q Consensus 229 s~s~dg~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~ 307 (489)
+|+.|..+.+||+.++. +...+ .+|...+.+++|.|||..+++|+.|++|..||+.. +.+..+++-.. +.|.+
T Consensus 286 aCg~~e~~~lwDv~tgd--~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr~---~~v~d 359 (519)
T KOG0293|consen 286 ACGFDEVLSLWDVDTGD--LRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVRD---PKVHD 359 (519)
T ss_pred ecCchHheeeccCCcch--hhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhccccccc---ceeEE
Confidence 99999999999999987 33322 24568899999999999999999999999999974 44555554321 12445
Q ss_pred EEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeec---cceeeecCCCCCCcCCCCcccccc
Q 037120 308 LKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYN---SRVSHVHCPPPAWLSDSNNSADQL 384 (489)
Q Consensus 308 l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 384 (489)
++.. +||+++++.+.|.... +++... ........+...+.
T Consensus 360 lait--------------------------~Dgk~vl~v~~d~~i~-l~~~e~~~dr~lise~~~its~~---------- 402 (519)
T KOG0293|consen 360 LAIT--------------------------YDGKYVLLVTVDKKIR-LYNREARVDRGLISEEQPITSFS---------- 402 (519)
T ss_pred EEEc--------------------------CCCcEEEEEeccccee-eechhhhhhhccccccCceeEEE----------
Confidence 5544 4555544444333210 010000 00000000000111
Q ss_pred CCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCc--eEEEEeeC-CCC
Q 037120 385 HLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEG--VTACVTHP-LNN 461 (489)
Q Consensus 385 ~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~~va~~p-~~~ 461 (489)
.+.++.+++..=.+..|++||+... ..+.... ||... |..-+|-- +..
T Consensus 403 -------iS~d~k~~LvnL~~qei~LWDl~e~----------~lv~kY~------------Ghkq~~fiIrSCFgg~~~~ 453 (519)
T KOG0293|consen 403 -------ISKDGKLALVNLQDQEIHLWDLEEN----------KLVRKYF------------GHKQGHFIIRSCFGGGNDK 453 (519)
T ss_pred -------EcCCCcEEEEEcccCeeEEeecchh----------hHHHHhh------------cccccceEEEeccCCCCcc
Confidence 1122778887788999999999977 6666666 77643 44445543 347
Q ss_pred eEEeccCcceeEEEecccc
Q 037120 462 TIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 462 ~i~sgs~dg~i~v~~~~~~ 480 (489)
+|||||+|+.|.+|-.+..
T Consensus 454 fiaSGSED~kvyIWhr~sg 472 (519)
T KOG0293|consen 454 FIASGSEDSKVYIWHRISG 472 (519)
T ss_pred eEEecCCCceEEEEEccCC
Confidence 9999999999999977654
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.8e-21 Score=185.74 Aligned_cols=282 Identities=15% Similarity=0.175 Sum_probs=189.7
Q ss_pred ccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 93 SFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
..|..|-+.|+|.|+|.+|.+++.||.|++|+.......+. ...-+... |.+++... +.|+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~-------ti~~~g~~---------v~~ia~~s---~~f~ 70 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE-------TIDISGEL---------VSSIACYS---NHFL 70 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc-------hhhccCce---------eEEEeecc---cceE
Confidence 34667899999999999999999999999999877321110 11112222 66666543 3788
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeec
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELS 252 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 252 (489)
+++.+ ++|.+|....+... ..+... +-+++.++|+-+|. +++.||.|-.|++-++.... ..+.+
T Consensus 71 ~~s~~-~tv~~y~fps~~~~--~iL~Rf----------tlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s--~~~~l 134 (933)
T KOG1274|consen 71 TGSEQ-NTVLRYKFPSGEED--TILARF----------TLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSS--QEKVL 134 (933)
T ss_pred Eeecc-ceEEEeeCCCCCcc--ceeeee----------eccceEEEEecCCc-EEEeecCceeEEEEeccccc--hheee
Confidence 88888 99999999544322 233322 23899999999999 99999999999999998876 45567
Q ss_pred cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCc---cC-CCCeeEEEeCCCCcceeeccccceeec
Q 037120 253 TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKE---VC-HLPLTSLKLASMLEKIGTLKAQSKIVS 328 (489)
Q Consensus 253 ~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~---~~-~~~v~~l~~~~~~~~i~~~~~~~~~~~ 328 (489)
.+|.++|.++.|+|.+.+|++.+.||+|++||+.++.+..++.+-.. .- -.++..++|+|++..++-.
T Consensus 135 rgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~-------- 206 (933)
T KOG1274|consen 135 RGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVP-------- 206 (933)
T ss_pred cccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEee--------
Confidence 79999999999999999999999999999999999888666654211 10 1234556666664433210
Q ss_pred cceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcE
Q 037120 329 QEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGI 408 (489)
Q Consensus 329 ~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i 408 (489)
|-...+.++ ...+|....++...+....+ ....|+|+ |.|+++++.||.|
T Consensus 207 ---------~~d~~Vkvy-~r~~we~~f~Lr~~~~ss~~-------------------~~~~wsPn-G~YiAAs~~~g~I 256 (933)
T KOG1274|consen 207 ---------PVDNTVKVY-SRKGWELQFKLRDKLSSSKF-------------------SDLQWSPN-GKYIAASTLDGQI 256 (933)
T ss_pred ---------ccCCeEEEE-ccCCceeheeecccccccce-------------------EEEEEcCC-CcEEeeeccCCcE
Confidence 111111111 12234433333322222211 22456666 8999999999999
Q ss_pred EEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeE
Q 037120 409 HLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLL 473 (489)
Q Consensus 409 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~ 473 (489)
-|||+.+. +. . -....|.+++|+|+.+.|-.-...|..-
T Consensus 257 ~vWnv~t~----------~~-~---------------~~~~~Vc~~aw~p~~n~it~~~~~g~~~ 295 (933)
T KOG1274|consen 257 LVWNVDTH----------ER-H---------------EFKRAVCCEAWKPNANAITLITALGTLG 295 (933)
T ss_pred EEEecccc----------hh-c---------------cccceeEEEecCCCCCeeEEEeeccccc
Confidence 99999875 22 1 2345799999999988554444444433
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=164.25 Aligned_cols=197 Identities=14% Similarity=0.214 Sum_probs=152.9
Q ss_pred ccccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 91 RRSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
++..|...|.|++.+.+.++|++|+.|.++++||++++++...- ..... |..+.|++++...
T Consensus 47 ty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~---------k~~~~---------Vk~~~F~~~gn~~ 108 (327)
T KOG0643|consen 47 TYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATW---------KTNSP---------VKRVDFSFGGNLI 108 (327)
T ss_pred eecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEe---------ecCCe---------eEEEeeccCCcEE
Confidence 46778888999999999999999999999999999997776631 11112 8889999998755
Q ss_pred EEEEecC---CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC
Q 037120 171 VACASTR---SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP 247 (489)
Q Consensus 171 l~s~~~d---~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 247 (489)
+++.... .+.|.++|++...+.. . .+........+...++.+-|.|-++ .|++|..||.|.+||++++..
T Consensus 109 l~~tD~~mg~~~~v~~fdi~~~~~~~--~---s~ep~~kI~t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~~- 181 (327)
T KOG0643|consen 109 LASTDKQMGYTCFVSVFDIRDDSSDI--D---SEEPYLKIPTPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGKE- 181 (327)
T ss_pred EEEehhhcCcceEEEEEEccCChhhh--c---ccCceEEecCCccceeeeeecccCC-EEEEecCCCcEEEEEcccCce-
Confidence 5443211 2689999997443210 0 0011111134557899999999999 999999999999999999753
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
.++....|+..|+.++++|+..++++++.|.+-++||+++.+.++++.. . .||++.+++|....+
T Consensus 182 ~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~t-e----~PvN~aaisP~~d~V 246 (327)
T KOG0643|consen 182 LVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTT-E----RPVNTAAISPLLDHV 246 (327)
T ss_pred eeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeee-c----ccccceecccccceE
Confidence 3555568899999999999999999999999999999999998888875 3 349999999876555
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.8e-23 Score=170.03 Aligned_cols=237 Identities=16% Similarity=0.208 Sum_probs=174.9
Q ss_pred ccccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 91 RRSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+|..|...|.....+.+...-|+++.|-+-+|||.-++..... ..|..- |.+++|+.+.. .
T Consensus 54 tfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhs---------------f~hkhi---vk~~af~~ds~-~ 114 (334)
T KOG0278|consen 54 TFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHS---------------FEHKHI---VKAVAFSQDSN-Y 114 (334)
T ss_pred eeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhh---------------hhhhhe---eeeEEecccch-h
Confidence 4777888899999999999999999999999999988444331 123333 89999999976 6
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
|++|+.+ ..++|||++.....+ ..+ .+|+..|..+-|+..++ .|++++.|++||+||.+++. .++
T Consensus 115 lltgg~e-kllrvfdln~p~App-------~E~----~ghtg~Ir~v~wc~eD~-~iLSSadd~tVRLWD~rTgt--~v~ 179 (334)
T KOG0278|consen 115 LLTGGQE-KLLRVFDLNRPKAPP-------KEI----SGHTGGIRTVLWCHEDK-CILSSADDKTVRLWDHRTGT--EVQ 179 (334)
T ss_pred hhccchH-HHhhhhhccCCCCCc-------hhh----cCCCCcceeEEEeccCc-eEEeeccCCceEEEEeccCc--EEE
Confidence 6777777 999999996554442 223 88999999999998888 89999999999999999987 343
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccc
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQE 330 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~ 330 (489)
.+ .-...|+++.++++|++| +....+.|.+||..+...++.++... . |.+..++|+...+.
T Consensus 180 sL-~~~s~VtSlEvs~dG~il-Tia~gssV~Fwdaksf~~lKs~k~P~-n----V~SASL~P~k~~fV------------ 240 (334)
T KOG0278|consen 180 SL-EFNSPVTSLEVSQDGRIL-TIAYGSSVKFWDAKSFGLLKSYKMPC-N----VESASLHPKKEFFV------------ 240 (334)
T ss_pred EE-ecCCCCcceeeccCCCEE-EEecCceeEEeccccccceeeccCcc-c----cccccccCCCceEE------------
Confidence 33 235789999999999975 44566789999999988877766421 2 66666666554332
Q ss_pred eeEEEeCCCCCeEEEEEecCCceEEEEe---------eccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEe
Q 037120 331 IHSIDLDPSCSYQLAFHLDDGWSGVLDV---------YNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVG 401 (489)
Q Consensus 331 i~~~~~~p~~~~~~~~~~~~~w~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 401 (489)
++.++.|....+. .+||...++|. .|+++ +...++
T Consensus 241 ---------------aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcV--rFSPd-------------------GE~yAs 284 (334)
T KOG0278|consen 241 ---------------AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCV--RFSPD-------------------GELYAS 284 (334)
T ss_pred ---------------ecCcceEEEEEeccCCceeeecccCCCCceEEE--EECCC-------------------Cceeec
Confidence 2222223222222 25555555555 44444 667788
Q ss_pred ecCCCcEEEEeccCC
Q 037120 402 SSSDHGIHLLDFFPG 416 (489)
Q Consensus 402 gs~d~~i~vwd~~~~ 416 (489)
||+||+|+||-...+
T Consensus 285 GSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 285 GSEDGTIRLWQTTPG 299 (334)
T ss_pred cCCCceEEEEEecCC
Confidence 999999999998877
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.7e-22 Score=177.93 Aligned_cols=219 Identities=15% Similarity=0.218 Sum_probs=168.6
Q ss_pred cCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEE
Q 037120 150 LHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIA 229 (489)
Q Consensus 150 ~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 229 (489)
.|.++ |..+...|+...++++.+.. +.|.|||.......+...- .-.....+.+|.+.-.+++|++.....+++
T Consensus 122 ~h~gE---VnRaRymPQnp~iVAt~t~~-~dv~Vfd~tk~~s~~~~~~--~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls 195 (422)
T KOG0264|consen 122 NHDGE---VNRARYMPQNPNIVATKTSS-GDVYVFDYTKHPSKPKASG--ECRPDLRLKGHEKEGYGLSWNRQQEGTLLS 195 (422)
T ss_pred cCCcc---chhhhhCCCCCcEEEecCCC-CCEEEEEeccCCCcccccc--cCCCceEEEeecccccccccccccceeEee
Confidence 36667 77799999999888888877 9999999976554432210 111233458899888899999998889999
Q ss_pred EeCCCcEEEEECCCCCc-----CceeeccCCCCceeEEEEeecCCE-EEEEeCCCeEEEEEcCC--CcccceeecCCccC
Q 037120 230 SDTHGVVNIWDRRVGVL-----PSLELSTGSHGTLNSIQLHAENQI-IFAAGKHGSIYLWDLRG--GRTSAPFHNHKEVC 301 (489)
Q Consensus 230 ~s~dg~i~iwd~~~~~~-----~~~~~~~~h~~~v~~~~~~p~~~~-l~~~~~dg~i~lwd~~~--~~~~~~~~~~~~~~ 301 (489)
++.|++|++||+..... .....+.+|+..|..++|+|.... +.+++.|+.+.|||+|+ .+......+|...
T Consensus 196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~- 274 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAE- 274 (422)
T ss_pred ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCc-
Confidence 99999999999987643 134466799999999999996655 45557799999999995 3335555566544
Q ss_pred CCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccc
Q 037120 302 HLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSA 381 (489)
Q Consensus 302 ~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (489)
|.+++|+|- +
T Consensus 275 ---vn~~~fnp~--------------------------~----------------------------------------- 284 (422)
T KOG0264|consen 275 ---VNCVAFNPF--------------------------N----------------------------------------- 284 (422)
T ss_pred ---eeEEEeCCC--------------------------C-----------------------------------------
Confidence 666655542 1
Q ss_pred cccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCC
Q 037120 382 DQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN 461 (489)
Q Consensus 382 ~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~ 461 (489)
+.+|++||.|++|++||++.- .+.+..++ +|.+.|..|.|+|...
T Consensus 285 --------------~~ilAT~S~D~tV~LwDlRnL---------~~~lh~~e------------~H~dev~~V~WSPh~e 329 (422)
T KOG0264|consen 285 --------------EFILATGSADKTVALWDLRNL---------NKPLHTFE------------GHEDEVFQVEWSPHNE 329 (422)
T ss_pred --------------CceEEeccCCCcEEEeechhc---------ccCceecc------------CCCcceEEEEeCCCCC
Confidence 557889999999999999876 14556667 9999999999999874
Q ss_pred -eEEeccCcceeEEEecccc
Q 037120 462 -TIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 462 -~i~sgs~dg~i~v~~~~~~ 480 (489)
.+|++|.|+.+.||.-.+-
T Consensus 330 tvLASSg~D~rl~vWDls~i 349 (422)
T KOG0264|consen 330 TVLASSGTDRRLNVWDLSRI 349 (422)
T ss_pred ceeEecccCCcEEEEecccc
Confidence 8999999999999965543
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-22 Score=189.86 Aligned_cols=262 Identities=15% Similarity=0.205 Sum_probs=191.5
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
...++|..+++-.-|+.++.. .++||.+........ . ..........-+.+..|+|+....++|++++.
T Consensus 40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~--------~--~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~ 108 (839)
T KOG0269|consen 40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEK--------C--NHRFKTKQNKFYSAADVKWGQLYSNLIATCST 108 (839)
T ss_pred cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcc--------e--eeecccccceeeehhhcccccchhhhheeecC
Confidence 346778888888778877754 678887765222111 0 00000000111125569999777789999999
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~ 256 (489)
+ |.|-+||+...... ..+..+.+|...|+++.|++..+++|++||.||+|++||+|..+ ....+.+..
T Consensus 109 n-G~i~vWdlnk~~rn---------k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~--S~~t~~~nS 176 (839)
T KOG0269|consen 109 N-GVISVWDLNKSIRN---------KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKK--SKSTFRSNS 176 (839)
T ss_pred C-CcEEEEecCccccc---------hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccc--ccccccccc
Confidence 8 99999999542111 11222388999999999999999999999999999999999876 444566778
Q ss_pred CceeEEEEeec-CCEEEEEeCCCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEE
Q 037120 257 GTLNSIQLHAE-NQIIFAAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSI 334 (489)
Q Consensus 257 ~~v~~~~~~p~-~~~l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~ 334 (489)
..|..+.|+|. +.+++++...|.+++||+|.... ...+..|.+. |.++.|+|+
T Consensus 177 ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~Gp----V~c~nwhPn--------------------- 231 (839)
T KOG0269|consen 177 ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGP----VLCLNWHPN--------------------- 231 (839)
T ss_pred hhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCc----eEEEeecCC---------------------
Confidence 89999999995 45566666799999999998655 7778888866 777776663
Q ss_pred EeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEecc
Q 037120 335 DLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFF 414 (489)
Q Consensus 335 ~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~ 414 (489)
+.+|+||+.|+.|+|||+.
T Consensus 232 -------------------------------------------------------------r~~lATGGRDK~vkiWd~t 250 (839)
T KOG0269|consen 232 -------------------------------------------------------------REWLATGGRDKMVKIWDMT 250 (839)
T ss_pred -------------------------------------------------------------CceeeecCCCccEEEEecc
Confidence 4567788999999999998
Q ss_pred CCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCC-eEEeccC--cceeEEEecccccccccccc
Q 037120 415 PGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN-TIVAGTK--NSSLLVVSQKQQCTSDSMLE 488 (489)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~-~i~sgs~--dg~i~v~~~~~~~~~~~~~~ 488 (489)
+. +...... +.-..+|..|.|-|... .||+++. |-.|.||...+.=+...+++
T Consensus 251 ~~----------~~~~~~t-----------InTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~ 306 (839)
T KOG0269|consen 251 DS----------RAKPKHT-----------INTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFL 306 (839)
T ss_pred CC----------CccceeE-----------EeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeee
Confidence 76 2222111 12456899999999885 7888764 88999999999888877765
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=194.27 Aligned_cols=267 Identities=12% Similarity=0.184 Sum_probs=183.9
Q ss_pred cccCCCCCCceeEEEeeCCCCCEEEEEe--cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCc
Q 037120 148 HLLHIPLPQQLDAVRWNLANQDEVACAS--TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTS 225 (489)
Q Consensus 148 ~~~h~~~~~~V~~v~~~~~~~~~l~s~~--~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 225 (489)
+..|.... |.+++.+|++. .+++|+ .| +.++||+...--.+....-........+...|.+.|+++.|+|||.
T Consensus 8 wv~H~~~~--IfSIdv~pdg~-~~aTgGq~~d-~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~- 82 (942)
T KOG0973|consen 8 WVNHNEKS--IFSIDVHPDGV-KFATGGQVLD-GGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS- 82 (942)
T ss_pred ccccCCee--EEEEEecCCce-eEecCCcccc-ccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC-
Confidence 34454332 89999999996 888888 77 8888999842211100000001222334578999999999999999
Q ss_pred EEEEEeCCCcEEEEECCC----------C------CcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCc
Q 037120 226 RLIASDTHGVVNIWDRRV----------G------VLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGR 289 (489)
Q Consensus 226 ~l~s~s~dg~i~iwd~~~----------~------~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~ 289 (489)
+||+|++|+.|.||+... + ...++..+.+|.+.|..++|+|++.++++++.|++|.|||.++++
T Consensus 83 ~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~ 162 (942)
T KOG0973|consen 83 YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFE 162 (942)
T ss_pred eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccce
Confidence 999999999999999872 0 111455677999999999999999999999999999999999999
Q ss_pred ccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCC
Q 037120 290 TSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCP 369 (489)
Q Consensus 290 ~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 369 (489)
.+..+.+|... |..+.|.|-|+++++.. +++.+..+... .|. +.+..++
T Consensus 163 ~~~vl~~H~s~----VKGvs~DP~Gky~ASqs-----------------dDrtikvwrt~-dw~-i~k~It~-------- 211 (942)
T KOG0973|consen 163 LLKVLRGHQSL----VKGVSWDPIGKYFASQS-----------------DDRTLKVWRTS-DWG-IEKSITK-------- 211 (942)
T ss_pred eeeeeeccccc----ccceEECCccCeeeeec-----------------CCceEEEEEcc-cce-eeEeecc--------
Confidence 99999999987 99999999999998632 22233322211 132 1111111
Q ss_pred CCCCcCCCCccccccCCCcceeecCCcEEEEeecCCC---cEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCccc
Q 037120 370 PPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDH---GIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVP 446 (489)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (489)
.|....- .-..+.++|+|+|..+++.-+..+ ++.|.+-.+ +...-.++|
T Consensus 212 --pf~~~~~----~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t----------------------Wk~~~~LvG 263 (942)
T KOG0973|consen 212 --PFEESPL----TTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT----------------------WKVDKDLVG 263 (942)
T ss_pred --chhhCCC----cceeeecccCCCcCeecchhhccCCcceeEEEecCC----------------------ceeeeeeec
Confidence 1111100 012355789999777666655443 344443322 222233559
Q ss_pred CCCceEEEEeeCCC-----C------------eEEeccCcceeEEEecc
Q 037120 447 LSEGVTACVTHPLN-----N------------TIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 447 h~~~V~~va~~p~~-----~------------~i~sgs~dg~i~v~~~~ 478 (489)
|..++.++.|+|.- . .+|+||.|++|-||...
T Consensus 264 H~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~ 312 (942)
T KOG0973|consen 264 HSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTA 312 (942)
T ss_pred CCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecC
Confidence 99999999999841 1 78999999999999873
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-21 Score=182.26 Aligned_cols=260 Identities=15% Similarity=0.174 Sum_probs=174.0
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|.+.|..+.|-|....|++++.|.++++||+....+. +...+.+|... |.+++|.|.++.+|
T Consensus 96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~------------G~~~~~GH~~S---vkS~cf~~~n~~vF 160 (720)
T KOG0321|consen 96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV------------GGRLNLGHTGS---VKSECFMPTNPAVF 160 (720)
T ss_pred cccccceeEeeccCCCceeEEEccCCceeeeeeeccceee------------cceeecccccc---cchhhhccCCCcce
Confidence 5667788999999997788999999999999999984433 33345788888 88899999999999
Q ss_pred EEEecCCCEEEEEEeccCCCCC-------------c--eeeeeceeeeeecCCcccCeeE---EEEecCCCcEEEEEeC-
Q 037120 172 ACASTRSNVVSIYDIGYISDEP-------------V--EVLKTRRSVTVVGSDVQKGLSD---LAFSAVNTSRLIASDT- 232 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~-------------~--~~~~~~~~~~~~~~~h~~~v~~---~~~~~~~~~~l~s~s~- 232 (489)
++|+.| |.|.|||++...... . .-.++...-+.....|...|.+ +.+..|.. .|++++.
T Consensus 161 ~tGgRD-g~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~ 238 (720)
T KOG0321|consen 161 CTGGRD-GEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDES-TLASAGAA 238 (720)
T ss_pred eeccCC-CcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccc-eeeeccCC
Confidence 999999 999999998543110 0 0111111111122345555555 55555666 8999886
Q ss_pred CCcEEEEECCCCCcC----ce--eeccCC---CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc--cceeecCCccC
Q 037120 233 HGVVNIWDRRVGVLP----SL--ELSTGS---HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT--SAPFHNHKEVC 301 (489)
Q Consensus 233 dg~i~iwd~~~~~~~----~~--~~~~~h---~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~ 301 (489)
|+.|+|||++..... .. ..+..| .-.+.++..+..|.+|++.+.|+.|++|++++... +..+.++...
T Consensus 239 D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~- 317 (720)
T KOG0321|consen 239 DSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNS- 317 (720)
T ss_pred CcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccc-
Confidence 999999999976422 11 111122 34678899999999999999999999999997543 3333333211
Q ss_pred CCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCC---ce-----EEEEeeccceeeecCCCCCC
Q 037120 302 HLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDG---WS-----GVLDVYNSRVSHVHCPPPAW 373 (489)
Q Consensus 302 ~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~---w~-----~~~~~~~~~~~~~~~~~~~~ 373 (489)
.+ + ..-..+|++.+++..+.+.. |. .-...+.||...++++
T Consensus 318 -----sf-------~---------------vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V---- 366 (720)
T KOG0321|consen 318 -----SF-------Y---------------VKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTV---- 366 (720)
T ss_pred -----ee-------e---------------eeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEE----
Confidence 10 0 01135677777777766654 31 1123445665555554
Q ss_pred cCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCC
Q 037120 374 LSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPG 416 (489)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~ 416 (489)
+|.|..-.-++++++|..++||++..+
T Consensus 367 ----------------~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 367 ----------------RWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred ----------------eeccccCCCceeeccCcceEEEeccCc
Confidence 344443445666799999999999766
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.3e-22 Score=185.86 Aligned_cols=194 Identities=17% Similarity=0.244 Sum_probs=152.4
Q ss_pred ccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCc--ccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 93 SFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESL--YYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~--~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
..|..-|+.++...+|+.|++++.|-+|++|+.... .|.. ++..|..+ |.|++.-.....+
T Consensus 70 e~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~s--------tir~H~DY---------Vkcla~~ak~~~l 132 (735)
T KOG0308|consen 70 EHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMS--------TIRTHKDY---------VKCLAYIAKNNEL 132 (735)
T ss_pred hhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHh--------hhhcccch---------heeeeecccCcee
Confidence 334444888888889999999999999999999875 2333 34445555 9999994444469
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeec-CCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVG-SDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
+++|+-| +.|.+||++.+........ .......+ .|+...|++++.++.+. .|++|+..+.+++||.++.+ .+
T Consensus 133 vaSgGLD-~~IflWDin~~~~~l~~s~--n~~t~~sl~sG~k~siYSLA~N~t~t-~ivsGgtek~lr~wDprt~~--ki 206 (735)
T KOG0308|consen 133 VASGGLD-RKIFLWDINTGTATLVASF--NNVTVNSLGSGPKDSIYSLAMNQTGT-IIVSGGTEKDLRLWDPRTCK--KI 206 (735)
T ss_pred EEecCCC-ccEEEEEccCcchhhhhhc--cccccccCCCCCccceeeeecCCcce-EEEecCcccceEEecccccc--ce
Confidence 9999999 9999999975533111111 11111122 38999999999999998 99999999999999999976 34
Q ss_pred eeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCC
Q 037120 250 ELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASM 313 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 313 (489)
..+.+|+.-|.++..++||..++++++||+|++||+...+++.++..|.+. |.++.-+|+
T Consensus 207 mkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~----VWaL~~~~s 266 (735)
T KOG0308|consen 207 MKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG----VWALQSSPS 266 (735)
T ss_pred eeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc----eEEEeeCCC
Confidence 456699999999999999999999999999999999999999999988877 777654443
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=177.50 Aligned_cols=252 Identities=15% Similarity=0.209 Sum_probs=186.8
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
.+|.|+||+.+.+.||.+-.||.|.+|++...-+... ..|-.+...|.+++|++.+ .|++.+.
T Consensus 26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~---------------vi~g~~drsIE~L~W~e~~--RLFS~g~ 88 (691)
T KOG2048|consen 26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP---------------VIHGPEDRSIESLAWAEGG--RLFSSGL 88 (691)
T ss_pred cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE---------------EEecCCCCceeeEEEccCC--eEEeecC
Confidence 5699999999999999999999999999988433321 2233333348899999665 4555555
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~ 256 (489)
+ |+|.-||+- .+++.... ....+.|++++.+|.+. .++.|+.||.+..++...++......+...+
T Consensus 89 s-g~i~EwDl~--------~lk~~~~~----d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~ 154 (691)
T KOG2048|consen 89 S-GSITEWDLH--------TLKQKYNI----DSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQK 154 (691)
T ss_pred C-ceEEEEecc--------cCceeEEe----cCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeeccccc
Confidence 5 999999993 33323322 44557999999999998 8999999998888888776533333343456
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEe
Q 037120 257 GTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDL 336 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 336 (489)
+.|.+++|+|++..+++|+.||.|++||..++..++........ ..+....-|+++.+
T Consensus 155 sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~----------------------l~k~~~~iVWSv~~ 212 (691)
T KOG2048|consen 155 SRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDR----------------------LSKREPTIVWSVLF 212 (691)
T ss_pred ceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccc----------------------cccCCceEEEEEEE
Confidence 89999999999999999999999999999988765422111000 00000001122111
Q ss_pred CCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCC
Q 037120 337 DPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPG 416 (489)
Q Consensus 337 ~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~ 416 (489)
.. ...+++|..-|+|.+||...+
T Consensus 213 -------------------------------------Lr--------------------d~tI~sgDS~G~V~FWd~~~g 235 (691)
T KOG2048|consen 213 -------------------------------------LR--------------------DSTIASGDSAGTVTFWDSIFG 235 (691)
T ss_pred -------------------------------------ee--------------------cCcEEEecCCceEEEEcccCc
Confidence 00 446888999999999999999
Q ss_pred CCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccc
Q 037120 417 SSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
..++... .|...|.+++..++++++.++|.|+.|.-|..+.+
T Consensus 236 ----------TLiqS~~------------~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 236 ----------TLIQSHS------------CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred ----------chhhhhh------------hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence 8888888 89999999999999999999999999999987765
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-21 Score=173.20 Aligned_cols=248 Identities=17% Similarity=0.207 Sum_probs=176.3
Q ss_pred CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcc---------cccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 108 GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKE---------DQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 108 g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~---------~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
|+|+|.|+.|..|.|||+.-...+.. -...|... ......+|+.. |.+++|+-.-.++|++|+.|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P--~~~LGs~~sk~~~k~~k~~~~~~gHTda---vl~Ls~n~~~~nVLaSgsaD- 265 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLP--CVTLGSKASKKKKKKGKRSNSASGHTDA---VLALSWNRNFRNVLASGSAD- 265 (463)
T ss_pred cceEEEeccCceeEEecccccccccc--ceeechhhhhhhhhhcccccccccchHH---HHHHHhccccceeEEecCCC-
Confidence 78999999999999999875221110 00001000 11112457777 78899999988999999999
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCc
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGT 258 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~ 258 (489)
.+|++||+..+... .. +..|.+.|.+++|+|..+..|++|+.|++|.+.|.|.....-. .-.-.+.
T Consensus 266 ~TV~lWD~~~g~p~--------~s----~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~--~wk~~g~ 331 (463)
T KOG0270|consen 266 KTVKLWDVDTGKPK--------SS----ITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGK--EWKFDGE 331 (463)
T ss_pred ceEEEEEcCCCCcc--------ee----hhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCc--eEEeccc
Confidence 99999999554322 22 2568899999999999998999999999999999996432211 1123688
Q ss_pred eeEEEEeecCCEEEEEe-CCCeEEEEEcCCC-cccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEe
Q 037120 259 LNSIQLHAENQIIFAAG-KHGSIYLWDLRGG-RTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDL 336 (489)
Q Consensus 259 v~~~~~~p~~~~l~~~~-~dg~i~lwd~~~~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 336 (489)
|-.++|+|.....+.++ .||+|+-+|+|+. +++.+++.|.+. |.+|+++.
T Consensus 332 VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~----ISgl~~n~------------------------ 383 (463)
T KOG0270|consen 332 VEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDE----ISGLSVNI------------------------ 383 (463)
T ss_pred eEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCC----cceEEecC------------------------
Confidence 99999999887665555 5999999999985 668888888766 66665332
Q ss_pred CCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCC
Q 037120 337 DPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPG 416 (489)
Q Consensus 337 ~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~ 416 (489)
.- ..+++++|.|+.+++|++...
T Consensus 384 --~~-------------------------------------------------------p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 384 --QT-------------------------------------------------------PGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred --CC-------------------------------------------------------CcceeeccccceEEEEeecCC
Confidence 10 446778999999999999765
Q ss_pred CCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCC-eEEeccCcceeEEEecccc
Q 037120 417 SSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN-TIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~-~i~sgs~dg~i~v~~~~~~ 480 (489)
.+ ..+..-. ---+...|.++.|+-. .+|.||..+.++||.....
T Consensus 407 ~~--------~~v~~~~------------~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 407 SP--------KSVKEHS------------FKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred CC--------ccccccc------------ccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 11 1111111 0012356778888775 7899999999999975543
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=168.31 Aligned_cols=339 Identities=14% Similarity=0.093 Sum_probs=206.3
Q ss_pred CCCceeEEEECCCCc-EEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 95 GKPGISALDFDCKGI-YLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~-~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
.+..|..+.|.++.. .||+|+.|..|+||-++........ +..+-+..+..|... |+++.|+|++. ++++
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-----~~V~y~s~Ls~H~~a---VN~vRf~p~ge-lLAS 82 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-----MKVEYLSSLSRHTRA---VNVVRFSPDGE-LLAS 82 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc-----eeEEEeecccCCcce---eEEEEEcCCcC-eeee
Confidence 345699999998876 9999999999999998874433311 134444555667777 99999999986 9999
Q ss_pred EecCCCEEEEEEeccCC---CCC-ceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 174 ASTRSNVVSIYDIGYIS---DEP-VEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~---~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
|+++ |.|.+|...... ... ....++.......+.+|...|..++|+|++. .+++++.|+.+++||++.+. ..
T Consensus 83 g~D~-g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~-~l~s~s~dns~~l~Dv~~G~--l~ 158 (434)
T KOG1009|consen 83 GGDG-GEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN-FLVSGSVDNSVRLWDVHAGQ--LL 158 (434)
T ss_pred cCCC-ceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc-eeeeeeccceEEEEEeccce--eE
Confidence 9977 999999885210 000 0111222333344588999999999999999 99999999999999999998 66
Q ss_pred eeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceee--------cC-----------CccCCCCeeEEEe
Q 037120 250 ELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH--------NH-----------KEVCHLPLTSLKL 310 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~--------~~-----------~~~~~~~v~~l~~ 310 (489)
.....|...+.-++|.|-++++++-+.|...+.+++..-+.++... .+ .+.-..-...++|
T Consensus 159 ~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsf 238 (434)
T KOG1009|consen 159 AILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSF 238 (434)
T ss_pred eeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhccc
Confidence 6778999999999999999999999999877777765533321111 00 0000011234455
Q ss_pred CCCCcceeeccccceeeccceeEEEeCCCCCe--EEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCc
Q 037120 311 ASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSY--QLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRK 388 (489)
Q Consensus 311 ~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~--~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (489)
+|+|..+.+-....+..........+.++++. .-++.+..--...+.+....+..-.++ .... .
T Consensus 239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp---~~~~-----------~ 304 (434)
T KOG1009|consen 239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRP---LSSE-----------K 304 (434)
T ss_pred CCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecc---cccc-----------c
Confidence 55555443322111111111111111111110 000000000000000000000000000 0000 0
Q ss_pred cee-ecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEecc
Q 037120 389 PSW-LSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGT 467 (489)
Q Consensus 389 ~~~-~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs 467 (489)
..+ +|-+-.++++ ..+.|+|||..+. +.+.... .-|-..|++++|++++..++..|
T Consensus 305 ~~~~lpyrlvfaiA--t~~svyvydtq~~----------~P~~~v~-----------nihy~~iTDiaws~dg~~l~vSS 361 (434)
T KOG1009|consen 305 FLFVLPYRLVFAIA--TKNSVYVYDTQTL----------EPLAVVD-----------NIHYSAITDIAWSDDGSVLLVSS 361 (434)
T ss_pred cccccccceEEEEe--ecceEEEeccccc----------cceEEEe-----------eeeeeeecceeecCCCcEEEEec
Confidence 011 1122334443 5678999998876 4443332 04778999999999999999999
Q ss_pred CcceeEEEeccccccc
Q 037120 468 KNSSLLVVSQKQQCTS 483 (489)
Q Consensus 468 ~dg~i~v~~~~~~~~~ 483 (489)
.||-.-++..++..+.
T Consensus 362 ~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 362 TDGFCSLVTFEPWELG 377 (434)
T ss_pred cCCceEEEEEcchhcc
Confidence 9999999888877665
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=169.45 Aligned_cols=305 Identities=20% Similarity=0.231 Sum_probs=190.4
Q ss_pred ccCCCceeEEEECCCC--cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 93 SFGKPGISALDFDCKG--IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g--~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
..+...|++++|+|.. +++|+|..-|.|-+||+.+.+. .......+..|... |.++.|+|.+...
T Consensus 183 kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~----------d~d~v~~f~~hs~~---Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 183 KVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK----------DKDGVYLFTPHSGP---VSGLKFSPANTSQ 249 (498)
T ss_pred EecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC----------ccCceEEeccCCcc---ccceEecCCChhh
Confidence 3344569999999975 5889999999999999964111 12222334556666 8899999999999
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
+++.+.| |+|++-|+.....+ .++.. ..-...+.++.|+.... .++.+..=|...+||+|+++.. ..
T Consensus 250 i~ssSyD-GtiR~~D~~~~i~e--~v~s~--------~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s~-~~ 316 (498)
T KOG4328|consen 250 IYSSSYD-GTIRLQDFEGNISE--EVLSL--------DTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGSE-YE 316 (498)
T ss_pred eeeeccC-ceeeeeeecchhhH--HHhhc--------CccceeeeeccccCCCc-cEEEeecccceEEEEeecCCcc-ch
Confidence 9999999 99999999543322 11111 11234677888888888 6777777779999999998654 33
Q ss_pred eccCCCCceeEEEEeecCCEE-EEEeCCCeEEEEEcCCCcccce--e--ecCCccCCCCeeEEEeCCCCcceeeccccce
Q 037120 251 LSTGSHGTLNSIQLHAENQII-FAAGKHGSIYLWDLRGGRTSAP--F--HNHKEVCHLPLTSLKLASMLEKIGTLKAQSK 325 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l-~~~~~dg~i~lwd~~~~~~~~~--~--~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~ 325 (489)
...-|+..|.+++++|-.+++ +++|.|++.+|||+|....... + ..|... |.+..|+|.+
T Consensus 317 ~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hrrs----V~sAyFSPs~----------- 381 (498)
T KOG4328|consen 317 NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRS----VNSAYFSPSG----------- 381 (498)
T ss_pred hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccce----eeeeEEcCCC-----------
Confidence 455778899999999987765 5556699999999998543221 1 133333 5555555544
Q ss_pred eeccceeEEEeCCCCCeEEEEEecCCceEEEEeecc-ceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecC
Q 037120 326 IVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNS-RVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSS 404 (489)
Q Consensus 326 ~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~ 404 (489)
..+++.+.|+. +.+++. +.....++ ..-...++....-+..-+..|-|+ ..+++.|-.
T Consensus 382 ---------------gtl~TT~~D~~----IRv~dss~~sa~~~p-~~~I~Hn~~t~RwlT~fKA~W~P~-~~li~vg~~ 440 (498)
T KOG4328|consen 382 ---------------GTLLTTCQDNE----IRVFDSSCISAKDEP-LGTIPHNNRTGRWLTPFKAAWDPD-YNLIVVGRY 440 (498)
T ss_pred ---------------CceEeeccCCc----eEEeecccccccCCc-cceeeccCcccccccchhheeCCC-ccEEEEecc
Confidence 44444444432 111111 00000000 000000010001112233456664 556666677
Q ss_pred CCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCce-EEEEeeCCCCe-EEeccCcceeEEEecccc
Q 037120 405 DHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGV-TACVTHPLNNT-IVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 405 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V-~~va~~p~~~~-i~sgs~dg~i~v~~~~~~ 480 (489)
-..|-|+|-..+ +.+..+.. +....| .-.+|||.+.. +|.|+..|.|.||+.|+.
T Consensus 441 ~r~IDv~~~~~~----------q~v~el~~-----------P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~~ 497 (498)
T KOG4328|consen 441 PRPIDVFDGNGG----------QMVCELHD-----------PESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKKS 497 (498)
T ss_pred CcceeEEcCCCC----------EEeeeccC-----------ccccccccceeecccccceeccCCccceEEEEecCCC
Confidence 778999998877 54444320 222233 33589999994 455567999999999875
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.3e-20 Score=166.90 Aligned_cols=305 Identities=14% Similarity=0.182 Sum_probs=209.2
Q ss_pred cCCCceeEEEECCC--CcEEEEEe--cCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCC
Q 037120 94 FGKPGISALDFDCK--GIYLVSAT--RSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQD 169 (489)
Q Consensus 94 ~~~~~V~~~~fs~~--g~~la~g~--~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~ 169 (489)
.-+.+|.|++|++. |.+|+... .+..+.|||++...... ......+. |....|+|...+
T Consensus 152 ~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~--------~vk~sne~---------v~~a~FHPtd~n 214 (626)
T KOG2106|consen 152 FFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLG--------PVKTSNEV---------VFLATFHPTDPN 214 (626)
T ss_pred cccccceeeeecccCCCceEEEecCCCccccchhhchhhhccC--------cceeccce---------EEEEEeccCCCc
Confidence 34578999999975 67776654 36778999998844332 12222223 888999999999
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
++++.+ .+.+..|+.+.+.- .+....+ . ..-..-|.+++|.++|. ++||..+|.|.||+.++.. ..
T Consensus 215 liit~G--k~H~~Fw~~~~~~l-----~k~~~~f-e--k~ekk~Vl~v~F~engd--viTgDS~G~i~Iw~~~~~~--~~ 280 (626)
T KOG2106|consen 215 LIITCG--KGHLYFWTLRGGSL-----VKRQGIF-E--KREKKFVLCVTFLENGD--VITGDSGGNILIWSKGTNR--IS 280 (626)
T ss_pred EEEEeC--CceEEEEEccCCce-----EEEeecc-c--cccceEEEEEEEcCCCC--EEeecCCceEEEEeCCCce--EE
Confidence 999999 68999999854321 1111111 0 11226799999999998 8999999999999997754 33
Q ss_pred eeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceee---------c
Q 037120 250 ELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGT---------L 320 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~---------~ 320 (489)
+....|.+.|.+++.-.+|.+ ++|+.|..|.+|| ..-+.++..+-.+.. .+|+.++=...+-++++ +
T Consensus 281 k~~~aH~ggv~~L~~lr~Gtl-lSGgKDRki~~Wd-~~y~k~r~~elPe~~--G~iRtv~e~~~di~vGTtrN~iL~Gt~ 356 (626)
T KOG2106|consen 281 KQVHAHDGGVFSLCMLRDGTL-LSGGKDRKIILWD-DNYRKLRETELPEQF--GPIRTVAEGKGDILVGTTRNFILQGTL 356 (626)
T ss_pred eEeeecCCceEEEEEecCccE-eecCccceEEecc-ccccccccccCchhc--CCeeEEecCCCcEEEeeccceEEEeee
Confidence 344499999999999999986 5599999999999 444444444433322 44777765444433322 1
Q ss_pred ----cccceeeccceeEEEeCCCCCeEEEEEecCC---ceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeec
Q 037120 321 ----KAQSKIVSQEIHSIDLDPSCSYQLAFHLDDG---WSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLS 393 (489)
Q Consensus 321 ----~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~---w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (489)
.....++....+.++..|+...+++++.+.. |. .+.. .|...-. -+.....|.|
T Consensus 357 ~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-------~~k~-------~wt~~~~-----d~~~~~~fhp 417 (626)
T KOG2106|consen 357 ENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-------DHKL-------EWTKIIE-----DPAECADFHP 417 (626)
T ss_pred cCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc-------CCce-------eEEEEec-----CceeEeeccC
Confidence 1223345668889999999999888887765 42 1110 0000000 0012234455
Q ss_pred CCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeE
Q 037120 394 TNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLL 473 (489)
Q Consensus 394 ~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~ 473 (489)
.| .++.|+..|...|.|..+. ..+..-. . .+++++++|+|+|.+||.|+.|+.|.
T Consensus 418 sg--~va~Gt~~G~w~V~d~e~~----------~lv~~~~------------d-~~~ls~v~ysp~G~~lAvgs~d~~iy 472 (626)
T KOG2106|consen 418 SG--VVAVGTATGRWFVLDTETQ----------DLVTIHT------------D-NEQLSVVRYSPDGAFLAVGSHDNHIY 472 (626)
T ss_pred cc--eEEEeeccceEEEEecccc----------eeEEEEe------------c-CCceEEEEEcCCCCEEEEecCCCeEE
Confidence 55 7788899999999999887 5554433 3 67899999999999999999999999
Q ss_pred EEec
Q 037120 474 VVSQ 477 (489)
Q Consensus 474 v~~~ 477 (489)
||-.
T Consensus 473 iy~V 476 (626)
T KOG2106|consen 473 IYRV 476 (626)
T ss_pred EEEE
Confidence 9743
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-20 Score=166.97 Aligned_cols=299 Identities=14% Similarity=0.228 Sum_probs=199.3
Q ss_pred ccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 93 SFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
.+.+.+|+++.|+|...+|++++.||+++||.++...... .. ..| -...+|.+.+|.|+|...++
T Consensus 210 ~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~-------------lq-S~~-l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 210 HPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPK-------------LQ-SIH-LEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred CcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChh-------------he-eee-eccCccceeeecCCCceEEE
Confidence 4556779999999999999999999999999988721111 00 111 12334889999999987788
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCc-ccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDV-QKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
+++.. ..++.||+....... + .. +.++ ...+.....+++++ +|+..+..|.|.+....+++ .+..
T Consensus 275 ~s~rr-ky~ysyDle~ak~~k---~--~~-----~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~e--li~s 340 (514)
T KOG2055|consen 275 TSGRR-KYLYSYDLETAKVTK---L--KP-----PYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKE--LITS 340 (514)
T ss_pred ecccc-eEEEEeecccccccc---c--cC-----CCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhh--hhhe
Confidence 88876 899999994432111 1 11 1222 24567778899999 99999999999999988876 3322
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
+ .-++.|..++|+.+++.|++.+.+|.|.+||++...+++.+.... . |..
T Consensus 341 ~-KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G-~----v~g------------------------ 390 (514)
T KOG2055|consen 341 F-KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDG-S----VHG------------------------ 390 (514)
T ss_pred e-eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecC-c----cce------------------------
Confidence 2 236789999999999999999999999999999998888877522 2 210
Q ss_pred eEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCC-CCcCCCCccccccCCCcceeecCCcEEEEee-cCCCcEE
Q 037120 332 HSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPP-AWLSDSNNSADQLHLRKPSWLSTNSIYAVGS-SSDHGIH 409 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg-s~d~~i~ 409 (489)
++++.++++.++++++.. +++++|++........|. ....+ ...-.+..+.|.++...++++. ..++.+|
T Consensus 391 ts~~~S~ng~ylA~GS~~----GiVNIYd~~s~~~s~~PkPik~~d----NLtt~Itsl~Fn~d~qiLAiaS~~~knalr 462 (514)
T KOG2055|consen 391 TSLCISLNGSYLATGSDS----GIVNIYDGNSCFASTNPKPIKTVD----NLTTAITSLQFNHDAQILAIASRVKKNALR 462 (514)
T ss_pred eeeeecCCCceEEeccCc----ceEEEeccchhhccCCCCchhhhh----hhheeeeeeeeCcchhhhhhhhhccccceE
Confidence 344455566655544322 255666543221111110 00000 0011233456666655555443 3456899
Q ss_pred EEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 410 LLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 410 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
+-.+.+. ... .+++..+..++| |+|++|+|.+.++|.|.++|.+.||--
T Consensus 463 LVHvPS~----------TVF------sNfP~~n~~vg~---vtc~aFSP~sG~lAvGNe~grv~l~kL 511 (514)
T KOG2055|consen 463 LVHVPSC----------TVF------SNFPTSNTKVGH---VTCMAFSPNSGYLAVGNEAGRVHLFKL 511 (514)
T ss_pred EEeccce----------eee------ccCCCCCCcccc---eEEEEecCCCceEEeecCCCceeeEee
Confidence 9888776 222 233444444444 999999999999999999999999954
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.5e-20 Score=158.80 Aligned_cols=241 Identities=12% Similarity=0.170 Sum_probs=161.6
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeC--CCc
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT--HGV 235 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~--dg~ 235 (489)
|.++.|+++|. .+++++.| .+++|||...+... ..+ ..+.-.+..++|..... .++.++. |.+
T Consensus 17 i~sl~fs~~G~-~litss~d-Dsl~LYd~~~g~~~--~ti----------~skkyG~~~~~Fth~~~-~~i~sStk~d~t 81 (311)
T KOG1446|consen 17 INSLDFSDDGL-LLITSSED-DSLRLYDSLSGKQV--KTI----------NSKKYGVDLACFTHHSN-TVIHSSTKEDDT 81 (311)
T ss_pred eeEEEecCCCC-EEEEecCC-CeEEEEEcCCCcee--eEe----------ecccccccEEEEecCCc-eEEEccCCCCCc
Confidence 99999999997 44455555 79999999544211 222 22344788888887776 6666664 899
Q ss_pred EEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCc
Q 037120 236 VNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLE 315 (489)
Q Consensus 236 i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 315 (489)
|+..++.+.+ .++.+.+|...|++++.+|-+..+++++.|++|++||+|..++...+.... -...+|.|+|-
T Consensus 82 IryLsl~dNk--ylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~------~pi~AfDp~GL 153 (311)
T KOG1446|consen 82 IRYLSLHDNK--YLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSG------RPIAAFDPEGL 153 (311)
T ss_pred eEEEEeecCc--eEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCC------CcceeECCCCc
Confidence 9999999887 899999999999999999999999999999999999999877755554322 23455666665
Q ss_pred ceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCC
Q 037120 316 KIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTN 395 (489)
Q Consensus 316 ~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (489)
.++. ....+ -.++.++...... +...|.... .+......+.|+|+|
T Consensus 154 ifA~--------------------------~~~~~-~IkLyD~Rs~dkg----PF~tf~i~~---~~~~ew~~l~FS~dG 199 (311)
T KOG1446|consen 154 IFAL--------------------------ANGSE-LIKLYDLRSFDKG----PFTTFSITD---NDEAEWTDLEFSPDG 199 (311)
T ss_pred EEEE--------------------------ecCCC-eEEEEEecccCCC----CceeEccCC---CCccceeeeEEcCCC
Confidence 5543 21111 1112221110000 000111110 001122335667776
Q ss_pred cEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCc---eEEEEeeCCCCeEEeccCccee
Q 037120 396 SIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEG---VTACVTHPLNNTIVAGTKNSSL 472 (489)
Q Consensus 396 ~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---V~~va~~p~~~~i~sgs~dg~i 472 (489)
..+|++ ...+.+++.|.-++ ..+..+. ++... -....|.|++++|++|+.||+|
T Consensus 200 K~iLls-T~~s~~~~lDAf~G----------~~~~tfs------------~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i 256 (311)
T KOG1446|consen 200 KSILLS-TNASFIYLLDAFDG----------TVKSTFS------------GYPNAGNLPLSATFTPDSKFVLSGSDDGTI 256 (311)
T ss_pred CEEEEE-eCCCcEEEEEccCC----------cEeeeEe------------eccCCCCcceeEEECCCCcEEEEecCCCcE
Confidence 665555 67889999999988 5555555 22221 2688999999999999999999
Q ss_pred EEEecc
Q 037120 473 LVVSQK 478 (489)
Q Consensus 473 ~v~~~~ 478 (489)
.+|--+
T Consensus 257 ~vw~~~ 262 (311)
T KOG1446|consen 257 HVWNLE 262 (311)
T ss_pred EEEEcC
Confidence 999653
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-22 Score=191.61 Aligned_cols=190 Identities=17% Similarity=0.209 Sum_probs=162.5
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|+.+|.|+.|+++..+|++|+.+|+|++||++....+. .+.+|... +.+|.|+|.+. ++
T Consensus 66 ~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vr--------------tLtgh~~~---~~sv~f~P~~~-~~ 127 (825)
T KOG0267|consen 66 LTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVR--------------TLTGHLLN---ITSVDFHPYGE-FF 127 (825)
T ss_pred eeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhh--------------hhhccccC---cceeeeccceE-Ee
Confidence 56688889999999999999999999999999999854444 23677777 88899999986 66
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++|+.| +.+++||++... +.+.+.+|...|..++|+|+|. +++.+++|.+++|||+..++ ....
T Consensus 128 a~gStd-td~~iwD~Rk~G------------c~~~~~s~~~vv~~l~lsP~Gr-~v~~g~ed~tvki~d~~agk--~~~e 191 (825)
T KOG0267|consen 128 ASGSTD-TDLKIWDIRKKG------------CSHTYKSHTRVVDVLRLSPDGR-WVASGGEDNTVKIWDLTAGK--LSKE 191 (825)
T ss_pred cccccc-ccceehhhhccC------------ceeeecCCcceeEEEeecCCCc-eeeccCCcceeeeecccccc--cccc
Confidence 888888 999999994321 2223377999999999999999 99999999999999999988 7778
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceee
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
+..|++.+.++.|+|..-++..||.|++|++||+++...+...+..... |.+++|+|++..+.+
T Consensus 192 f~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~~----v~~~~fn~~~~~~~~ 255 (825)
T KOG0267|consen 192 FKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETDG----VRSLAFNPDGKIVLS 255 (825)
T ss_pred cccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccCC----ceeeeecCCceeeec
Confidence 8899999999999999999999999999999999998776666655444 999999999987743
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=174.81 Aligned_cols=304 Identities=14% Similarity=0.104 Sum_probs=190.6
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
|..|...|+||..+|.|.+||+|+.||+|+||.+.++.|+..- .+.. . |.||+|+|.+...+
T Consensus 396 yrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~------~~d~---------~---I~~vaw~P~~~~~v 457 (733)
T KOG0650|consen 396 YRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV------QFDS---------E---IRSVAWNPLSDLCV 457 (733)
T ss_pred EeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE------eecc---------e---eEEEEecCCCCcee
Confidence 5667778999999999999999999999999999998887731 1111 1 99999999987666
Q ss_pred EEEecCCCEEEEEEeccCCCC----Cceeee---------------------eceeeeeecCCcccCeeEEEEecCCCcE
Q 037120 172 ACASTRSNVVSIYDIGYISDE----PVEVLK---------------------TRRSVTVVGSDVQKGLSDLAFSAVNTSR 226 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~----~~~~~~---------------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 226 (489)
++.+.. ..+.|-+...+... ....+. ....-+.....|...|+.+.|+..|. +
T Consensus 458 LAvA~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD-Y 535 (733)
T KOG0650|consen 458 LAVAVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD-Y 535 (733)
T ss_pred EEEEec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc-e
Confidence 666655 55666655332000 000000 00000111245888999999999999 8
Q ss_pred EEEEeCC---CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCC
Q 037120 227 LIASDTH---GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHL 303 (489)
Q Consensus 227 l~s~s~d---g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~ 303 (489)
|++...+ ..|.|.++......+ -+.-..+.|.++.|+|...++++++. ..|+|||+.....++.+......
T Consensus 536 latV~~~~~~~~VliHQLSK~~sQ~--PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kw--- 609 (733)
T KOG0650|consen 536 LATVMPDSGNKSVLIHQLSKRKSQS--PFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKW--- 609 (733)
T ss_pred EEEeccCCCcceEEEEecccccccC--chhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCee---
Confidence 8887743 568899998765331 12233577999999999999988765 58999999987766666654545
Q ss_pred CeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccc
Q 037120 304 PLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQ 383 (489)
Q Consensus 304 ~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (489)
|.+++.+|.|..+.-. ...+.++.+.++-. ++.+.....|...+
T Consensus 610 -iS~msihp~GDnli~g-----------------s~d~k~~WfDldls-skPyk~lr~H~~av----------------- 653 (733)
T KOG0650|consen 610 -ISSMSIHPNGDNLILG-----------------SYDKKMCWFDLDLS-SKPYKTLRLHEKAV----------------- 653 (733)
T ss_pred -eeeeeecCCCCeEEEe-----------------cCCCeeEEEEcccC-cchhHHhhhhhhhh-----------------
Confidence 6666666655433210 01112222222211 01122222222111
Q ss_pred cCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccC--cccchhhHhhhhcccCCcccCCCc----eEEEEee
Q 037120 384 LHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYN--EDIESLSERTKLKKENRFVPLSEG----VTACVTH 457 (489)
Q Consensus 384 ~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~----V~~va~~ 457 (489)
+.+++++. -.++++|+.|+++.|+.-.-- -|.. .++..++ ++.+|... |..+.||
T Consensus 654 ---r~Va~H~r-yPLfas~sdDgtv~Vfhg~VY------~Dl~qnpliVPlK---------~L~gH~~~~~~gVLd~~wH 714 (733)
T KOG0650|consen 654 ---RSVAFHKR-YPLFASGSDDGTVIVFHGMVY------NDLLQNPLIVPLK---------RLRGHEKTNDLGVLDTIWH 714 (733)
T ss_pred ---hhhhhccc-cceeeeecCCCcEEEEeeeee------hhhhcCCceEeee---------eccCceeecccceEeeccc
Confidence 22233322 446778899999999853211 0000 1111111 11267554 9999999
Q ss_pred CCCCeEEeccCcceeEEEe
Q 037120 458 PLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 458 p~~~~i~sgs~dg~i~v~~ 476 (489)
|..+++.|+|.||+|+||.
T Consensus 715 P~qpWLfsAGAd~tirlfT 733 (733)
T KOG0650|consen 715 PRQPWLFSAGADGTIRLFT 733 (733)
T ss_pred CCCceEEecCCCceEEeeC
Confidence 9999999999999999984
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-20 Score=160.31 Aligned_cols=292 Identities=15% Similarity=0.194 Sum_probs=188.6
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEee-------CCCCCEE
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWN-------LANQDEV 171 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~-------~~~~~~l 171 (489)
...+.|+|||..|++-+.|..+++|++...-...... +..........|...+.-|..-+|- |+ ..++
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~----~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~-t~l~ 126 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKAD----GPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPS-TNLF 126 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCC----CccccccceeEEeccCCEEEEEEeeeccccCCCc-ccee
Confidence 5678999999999999999999999986532222100 0111111122344444447778884 44 3577
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCccc---CeeEEEEecCCCcEEEEEeCCCcEEEEEC-CCCCcC
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQK---GLSDLAFSAVNTSRLIASDTHGVVNIWDR-RVGVLP 247 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~l~s~s~dg~i~iwd~-~~~~~~ 247 (489)
++.+.+ .-|++||.-.++.+ .. .+. ..|.+ ...+++|+|||. .|++|. ...|+++|+ |.+...
T Consensus 127 a~ssr~-~PIh~wdaftG~lr--aS---y~~-----ydh~de~taAhsL~Fs~DGe-qlfaGy-krcirvFdt~RpGr~c 193 (406)
T KOG2919|consen 127 AVSSRD-QPIHLWDAFTGKLR--AS---YRA-----YDHQDEYTAAHSLQFSPDGE-QLFAGY-KRCIRVFDTSRPGRDC 193 (406)
T ss_pred eecccc-Cceeeeeccccccc--cc---hhh-----hhhHHhhhhheeEEecCCCC-eEeecc-cceEEEeeccCCCCCC
Confidence 777777 99999999544222 11 111 22333 446899999999 777555 789999999 555332
Q ss_pred ceeecc-----CCCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeecc
Q 037120 248 SLELST-----GSHGTLNSIQLHAENQ-IIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLK 321 (489)
Q Consensus 248 ~~~~~~-----~h~~~v~~~~~~p~~~-~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~ 321 (489)
...... +..+-|.|++|+|... .++.|+....+-||.-..+..+..+.+|.+. |+.|+|+++|..+.+-.
T Consensus 194 ~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gG----vThL~~~edGn~lfsGa 269 (406)
T KOG2919|consen 194 PVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGG----VTHLQWCEDGNKLFSGA 269 (406)
T ss_pred cchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCC----eeeEEeccCcCeecccc
Confidence 221111 3367789999999776 6777777888888888888889999999988 99999999998775422
Q ss_pred -ccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEE
Q 037120 322 -AQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAV 400 (489)
Q Consensus 322 -~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 400 (489)
...++. ++.|..+.+--+-+-.+.+++. .+ + .|..++. +.+|+
T Consensus 270 Rk~dkIl---~WDiR~~~~pv~~L~rhv~~TN-----------QR---I--~FDld~~-----------------~~~La 313 (406)
T KOG2919|consen 270 RKDDKIL---CWDIRYSRDPVYALERHVGDTN-----------QR---I--LFDLDPK-----------------GEILA 313 (406)
T ss_pred cCCCeEE---EEeehhccchhhhhhhhccCcc-----------ce---E--EEecCCC-----------------Cceee
Confidence 111111 1112111111111111111100 01 1 2222222 88999
Q ss_pred eecCCCcEEEEeccC-CCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcc
Q 037120 401 GSSSDHGIHLLDFFP-GSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNS 470 (489)
Q Consensus 401 sgs~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg 470 (489)
+|+.||.|++||+.. + +.+..+. .|.+.|+.|++||.-+++|+++...
T Consensus 314 sG~tdG~V~vwdlk~~g----------n~~sv~~------------~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 314 SGDTDGSVRVWDLKDLG----------NEVSVTG------------NYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred ccCCCccEEEEecCCCC----------Ccccccc------------cccccccceecCcccceeeeccCce
Confidence 999999999999987 4 4455555 8999999999999999999887643
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.4e-20 Score=176.32 Aligned_cols=333 Identities=13% Similarity=0.113 Sum_probs=224.5
Q ss_pred cccccccccc--cccccceeeecc----ccccccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCC
Q 037120 67 LCPTHEGIVN--SQRSRAGDVAMI----DHRRSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVG 140 (489)
Q Consensus 67 ~~~~~~~~~~--s~~~~~~~~~~~----~~~~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g 140 (489)
.+.+|.+.+. +...+...+++. -++|.....+|+++.=+|-=+.+|.|..+|+|.|+++...+....
T Consensus 167 HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~s------- 239 (910)
T KOG1539|consen 167 HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMS------- 239 (910)
T ss_pred cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEE-------
Confidence 6677776653 344555555544 234666777899999999999999999999999999998655542
Q ss_pred CcccccccccC-CCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEE
Q 037120 141 LKEDQSKHLLH-IPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAF 219 (489)
Q Consensus 141 ~~~~~~~~~~h-~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 219 (489)
+ .| .+. |++++|..||..+++++... |.+-+||+... +..... ...|.+.|....|
T Consensus 240 -F-------k~d~g~---VtslSFrtDG~p~las~~~~-G~m~~wDLe~k-----kl~~v~------~nah~~sv~~~~f 296 (910)
T KOG1539|consen 240 -F-------KQDWGR---VTSLSFRTDGNPLLASGRSN-GDMAFWDLEKK-----KLINVT------RNAHYGSVTGATF 296 (910)
T ss_pred -E-------Eccccc---eeEEEeccCCCeeEEeccCC-ceEEEEEcCCC-----eeeeee------eccccCCccccee
Confidence 1 12 122 99999999999999999988 99999999422 111111 1457788999999
Q ss_pred ecCCCcEEEEEeCCCcEEEEECCCCCc--CceeeccC-------------------------------------------
Q 037120 220 SAVNTSRLIASDTHGVVNIWDRRVGVL--PSLELSTG------------------------------------------- 254 (489)
Q Consensus 220 ~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~------------------------------------------- 254 (489)
.|..+ .+++++.|+.+++|=..++.- ..++.-.+
T Consensus 297 l~~ep-Vl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~ 375 (910)
T KOG1539|consen 297 LPGEP-VLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ 375 (910)
T ss_pred cCCCc-eEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc
Confidence 98888 889999888888773321100 00000000
Q ss_pred -----------------------------------------------------------------CC------CceeEEE
Q 037120 255 -----------------------------------------------------------------SH------GTLNSIQ 263 (489)
Q Consensus 255 -----------------------------------------------------------------h~------~~v~~~~ 263 (489)
+. ..+++++
T Consensus 376 ~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~ 455 (910)
T KOG1539|consen 376 LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVC 455 (910)
T ss_pred cccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEE
Confidence 01 3467888
Q ss_pred EeecCCEEEEEeCCCeEEEEEcCCCccccee---ecCCccCCCCeeEEEeCCCCcceeeccccceee-------------
Q 037120 264 LHAENQIIFAAGKHGSIYLWDLRGGRTSAPF---HNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIV------------- 327 (489)
Q Consensus 264 ~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~---~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~------------- 327 (489)
.++-|++.+.|.+.|+|-+|++.+|-....+ +.|.++ |++++....++.+.+...+....
T Consensus 456 vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~----V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l 531 (910)
T KOG1539|consen 456 VSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGE----VTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSL 531 (910)
T ss_pred EeccCceEEEeccCCeEEEEEcccCeeecccccCccccCc----eeEEEecCCCceEEEccCcceEEEEecCCcceeeee
Confidence 8888999999988999999999988776666 466666 99998888777664432221111
Q ss_pred --ccceeEEEeCCCCCeEEEEEecCCceEEEEee--------ccceeeecCCCCCCcCCCCccccccCCCcceeecCCcE
Q 037120 328 --SQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVY--------NSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSI 397 (489)
Q Consensus 328 --~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (489)
...+..+.++.....++ ...++--..++|.. .||..++.. .+|+|+ ++
T Consensus 532 ~l~~~~~~iv~hr~s~l~a-~~~ddf~I~vvD~~t~kvvR~f~gh~nritd--------------------~~FS~D-gr 589 (910)
T KOG1539|consen 532 RLGSSITGIVYHRVSDLLA-IALDDFSIRVVDVVTRKVVREFWGHGNRITD--------------------MTFSPD-GR 589 (910)
T ss_pred ccCCCcceeeeeehhhhhh-hhcCceeEEEEEchhhhhhHHhhccccceee--------------------eEeCCC-Cc
Confidence 12222222222222111 11222212334433 233333322 334444 78
Q ss_pred EEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCc-ceeEEEe
Q 037120 398 YAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKN-SSLLVVS 476 (489)
Q Consensus 398 ~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~d-g~i~v~~ 476 (489)
++++++.|++||+||+.++ ..+..+. ...+.+++.|+|++.++|+...| .-|.+|+
T Consensus 590 WlisasmD~tIr~wDlpt~----------~lID~~~-------------vd~~~~sls~SPngD~LAT~Hvd~~gIylWs 646 (910)
T KOG1539|consen 590 WLISASMDSTIRTWDLPTG----------TLIDGLL-------------VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS 646 (910)
T ss_pred EEEEeecCCcEEEEeccCc----------ceeeeEe-------------cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence 9999999999999999999 7776554 66789999999999999999988 7899998
Q ss_pred ccc
Q 037120 477 QKQ 479 (489)
Q Consensus 477 ~~~ 479 (489)
.|.
T Consensus 647 Nks 649 (910)
T KOG1539|consen 647 NKS 649 (910)
T ss_pred chh
Confidence 774
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.6e-20 Score=158.74 Aligned_cols=167 Identities=13% Similarity=0.174 Sum_probs=127.7
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCC-CCE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLAN-QDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~-~~~ 170 (489)
|..|...|+|+|. +|.++|+|+.|-+|+|||+.+..... .+ ..|.+. |+++.|.+.. ...
T Consensus 39 ~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg--------~l------l~Hags---itaL~F~~~~S~sh 99 (362)
T KOG0294|consen 39 FSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLG--------IL------LSHAGS---ITALKFYPPLSKSH 99 (362)
T ss_pred ccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhc--------ce------eccccc---eEEEEecCCcchhh
Confidence 6778788999997 67999999999999999999833332 22 335555 9999998764 236
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
|++|+.| |.|.+|++ . . .....++.+|...|+.++.+|.++ +-++.+.|+.+++||+-.++...+.
T Consensus 100 LlS~sdD-G~i~iw~~-----~---~----W~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr~a~v~ 165 (362)
T KOG0294|consen 100 LLSGSDD-GHIIIWRV-----G---S----WELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGRVAFVL 165 (362)
T ss_pred eeeecCC-CcEEEEEc-----C---C----eEEeeeecccccccceeEecCCCc-eEEEEcCCceeeeehhhcCccceee
Confidence 7788877 99999999 2 1 223444588999999999999999 9999999999999999988755332
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceee
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~ 295 (489)
.+ .+ .-+.+.|+|.|.+++.++.+ .|-+|.+.+-.....+.
T Consensus 166 ~L-~~--~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~ 206 (362)
T KOG0294|consen 166 NL-KN--KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIE 206 (362)
T ss_pred cc-CC--cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhh
Confidence 22 22 33449999999987777665 68899988766554444
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-18 Score=164.22 Aligned_cols=280 Identities=12% Similarity=0.050 Sum_probs=171.5
Q ss_pred CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEec
Q 037120 108 GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIG 187 (489)
Q Consensus 108 g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~ 187 (489)
++++++++.|+.|++||+.+.+.... + ..+ .. +.+++|+|++..++++++.+ +.|++||+.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~--------~------~~~-~~---~~~l~~~~dg~~l~~~~~~~-~~v~~~d~~ 61 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRT--------F------PVG-QR---PRGITLSKDGKLLYVCASDS-DTIQVIDLA 61 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEE--------E------ECC-CC---CCceEECCCCCEEEEEECCC-CeEEEEECC
Confidence 45788999999999999987443321 1 112 11 55699999987555676666 999999984
Q ss_pred cCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeec
Q 037120 188 YISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAE 267 (489)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~ 267 (489)
.. ..+.. +..+. .+..++|+|+++.++++++.|+.|++||+++.+ .+..+. +...+.+++|+|+
T Consensus 62 ~~-----~~~~~-------~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~--~~~~~~-~~~~~~~~~~~~d 125 (300)
T TIGR03866 62 TG-----EVIGT-------LPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRK--VLAEIP-VGVEPEGMAVSPD 125 (300)
T ss_pred CC-----cEEEe-------ccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCe--EEeEee-CCCCcceEEECCC
Confidence 32 11111 12222 356789999998344555678999999998754 343332 2344688999999
Q ss_pred CCEEEEEeCCC-eEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEE
Q 037120 268 NQIIFAAGKHG-SIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAF 346 (489)
Q Consensus 268 ~~~l~~~~~dg-~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~ 346 (489)
+..++++..++ .+.+||.++++....+.. ... ...++|+++++.+. +.
T Consensus 126 g~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~----~~~~~~s~dg~~l~--------------------------~~ 174 (300)
T TIGR03866 126 GKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQR----PRFAEFTADGKELW--------------------------VS 174 (300)
T ss_pred CCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCC----ccEEEECCCCCEEE--------------------------EE
Confidence 99999888754 577889987765443321 112 45566666665442 21
Q ss_pred EecCCceEEEEeeccceeeecCC-CCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeecc
Q 037120 347 HLDDGWSGVLDVYNSRVSHVHCP-PPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDY 425 (489)
Q Consensus 347 ~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~ 425 (489)
+..++...+++..++........ ....... ......++|+|++...+++.+.++.|.+||+.+.
T Consensus 175 ~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~--------- 239 (300)
T TIGR03866 175 SEIGGTVSVIDVATRKVIKKITFEIPGVHPE------AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY--------- 239 (300)
T ss_pred cCCCCEEEEEEcCcceeeeeeeecccccccc------cCCccceEECCCCCEEEEEcCCCCeEEEEECCCC---------
Confidence 11111111222222211110000 0000000 0111235677777776666666778999999877
Q ss_pred CcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEec-cCcceeEEEecccccc
Q 037120 426 NEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAG-TKNSSLLVVSQKQQCT 482 (489)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sg-s~dg~i~v~~~~~~~~ 482 (489)
+....+. +...+.+++|+|++..|+++ +.+|.|.||..+....
T Consensus 240 -~~~~~~~-------------~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 240 -EVLDYLL-------------VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred -cEEEEEE-------------eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcE
Confidence 4443322 34578999999999988875 5799999998876553
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-19 Score=161.98 Aligned_cols=317 Identities=11% Similarity=0.125 Sum_probs=209.8
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
.-|.|++|.++|+ +++|..+|.|.||+..+.+.... . ..|.+. |.+++...++ .|++|+.
T Consensus 247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~-------------~-~aH~gg---v~~L~~lr~G--tllSGgK 306 (626)
T KOG2106|consen 247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQ-------------V-HAHDGG---VFSLCMLRDG--TLLSGGK 306 (626)
T ss_pred eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeE-------------e-eecCCc---eEEEEEecCc--cEeecCc
Confidence 3499999999996 67999999999999976433331 1 245555 8889998887 4666888
Q ss_pred CCCEEEEEEeccCCCCC---------cee-----------------ee--eceeeeeecCCcccCeeEEEEecCCCcEEE
Q 037120 177 RSNVVSIYDIGYISDEP---------VEV-----------------LK--TRRSVTVVGSDVQKGLSDLAFSAVNTSRLI 228 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~---------~~~-----------------~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 228 (489)
| +.|..||-...+..+ .+. +. ....+...-.+|.+..+.++.+|+.+ +++
T Consensus 307 D-Rki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q~~ 384 (626)
T KOG2106|consen 307 D-RKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-QLL 384 (626)
T ss_pred c-ceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-hee
Confidence 8 999999954322111 000 00 01112233367999999999999998 999
Q ss_pred EEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEE
Q 037120 229 ASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSL 308 (489)
Q Consensus 229 s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l 308 (489)
|++.|+.+++|+ ..++...... ..++.|+.|+|.| .+++|...|...+.|..+... -++....+ |++.+
T Consensus 385 T~gqdk~v~lW~---~~k~~wt~~~--~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~l-v~~~~d~~----~ls~v 453 (626)
T KOG2106|consen 385 TCGQDKHVRLWN---DHKLEWTKII--EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDL-VTIHTDNE----QLSVV 453 (626)
T ss_pred eccCcceEEEcc---CCceeEEEEe--cCceeEeeccCcc-eEEEeeccceEEEEeccccee-EEEEecCC----ceEEE
Confidence 999999999999 2222332322 6789999999999 888888899999999998443 33332243 49999
Q ss_pred EeCCCCcceeec------------------cccceeeccceeEEEeCCCCCeEEEEEecCC---ce--------EE----
Q 037120 309 KLASMLEKIGTL------------------KAQSKIVSQEIHSIDLDPSCSYQLAFHLDDG---WS--------GV---- 355 (489)
Q Consensus 309 ~~~~~~~~i~~~------------------~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~---w~--------~~---- 355 (489)
+|+|+|.+++-. ....+.+..+|+.++|++|++++...+.|.. |. .+
T Consensus 454 ~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvk 533 (626)
T KOG2106|consen 454 RYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVK 533 (626)
T ss_pred EEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceeccee
Confidence 999999988321 1222334578999999999999887766554 41 00
Q ss_pred EEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHh
Q 037120 356 LDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSER 435 (489)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 435 (489)
+..++-.+. +. .+.......+. .+--.....++++|.+.|.|++|...-.+.. ....+..
T Consensus 534 W~t~~c~lG--F~---v~g~s~~t~i~------a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~r-------A~~he~~-- 593 (626)
T KOG2106|consen 534 WATYTCTLG--FE---VFGGSDGTDIN------AVARSHCEKLLASGDDFGKVHLFSYPCSSPR-------APSHEYG-- 593 (626)
T ss_pred eeeeEEEEE--EE---EecccCCchHH------HhhhhhhhhhhhccccCceEEEEccccCCCc-------ccceeec--
Confidence 000000000 00 00000000000 0000112678888888899999976533111 1222333
Q ss_pred hhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 436 TKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 436 ~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
+|+..|++|+|.-....+++.+.|.+|..|.
T Consensus 594 ----------ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~ 624 (626)
T KOG2106|consen 594 ----------GHSSHVTNVAFLCKDSHLISTGKDTSIMQWR 624 (626)
T ss_pred ----------cccceeEEEEEeeCCceEEecCCCceEEEEE
Confidence 8999999999999888888888999999985
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.2e-21 Score=167.44 Aligned_cols=238 Identities=16% Similarity=0.188 Sum_probs=175.6
Q ss_pred eeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEE
Q 037120 202 SVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIY 281 (489)
Q Consensus 202 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~ 281 (489)
.|+..+.||.++|.+++=+|.....+++|+.||.|+|||+.+.+ +...+.+|.+.|..|++.. ..++++|.|.+|+
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~--~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK 132 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE--CIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVK 132 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhh--hhheeecccCceeeEEecc--cceEEecCCccee
Confidence 35666799999999999999886689999999999999999866 8888999999999999976 6789999999999
Q ss_pred EEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccc--------------eeeccceeEEEeCCCCCeEEEEE
Q 037120 282 LWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQS--------------KIVSQEIHSIDLDPSCSYQLAFH 347 (489)
Q Consensus 282 lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~--------------~~~~~~i~~~~~~p~~~~~~~~~ 347 (489)
.|-+.. ..++++.+.. . +..+.-+..+..+++..... .-....|.++.|+|....+++++
T Consensus 133 ~wk~~~-~p~~tilg~s-~----~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 133 QWKIDG-PPLHTILGKS-V----YLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASC 206 (433)
T ss_pred eeeccC-Ccceeeeccc-c----ccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeee
Confidence 999775 3455554422 2 34443333333333222111 11234578899999998888887
Q ss_pred ecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCc
Q 037120 348 LDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNE 427 (489)
Q Consensus 348 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~ 427 (489)
..+.-..+++...+...+. ....+.-..+||.| ...-+++|++|.+++.+|+..-. +
T Consensus 207 ~sDrsIvLyD~R~~~Pl~K-------------Vi~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~---------~ 263 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKK-------------VILTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLS---------R 263 (433)
T ss_pred ccCCceEEEecccCCccce-------------eeeeccccceecCc-cccceeeccccccceehhhhhhc---------c
Confidence 5555334555554443321 11225557789999 57777888999999999997651 3
Q ss_pred ccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccccccc
Q 037120 428 DIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQCTSD 484 (489)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~~~~ 484 (489)
.+.... +|...|.+|+|+|.|.-|++||-|.+|+||-..+...+|
T Consensus 264 p~~v~~------------dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRd 308 (433)
T KOG0268|consen 264 PLNVHK------------DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRD 308 (433)
T ss_pred cchhhc------------ccceeEEEeccCCCcchhccccccceEEEeecCCCcchh
Confidence 344444 999999999999999999999999999999776655554
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=188.70 Aligned_cols=293 Identities=15% Similarity=0.182 Sum_probs=198.6
Q ss_pred EEEECCCCc-EEEEEec----------CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCC
Q 037120 101 ALDFDCKGI-YLVSATR----------SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQD 169 (489)
Q Consensus 101 ~~~fs~~g~-~la~g~~----------dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~ 169 (489)
.++|+|++. +||+|+. +.++.||.+..... .......+.....+....++|.+.+..
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~------------~~dlk~~~s~~s~~rF~kL~W~~~g~~ 78 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDE------------SSDLKPVGSLQSSNRFNKLAWGSYGSH 78 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCc------------cccccccccccccccceeeeecccCCC
Confidence 457899886 6666643 44556665543111 111112232223333677999887765
Q ss_pred ---EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCc
Q 037120 170 ---EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVL 246 (489)
Q Consensus 170 ---~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 246 (489)
+++.|.+| |.|-+||....... . ....+.+...|++.|..+.|++...++|++|+.||.|.|||+...+.
T Consensus 79 ~~GlIaGG~ed-G~I~ly~p~~~~~~--~----~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~t 151 (1049)
T KOG0307|consen 79 SHGLIAGGLED-GNIVLYDPASIIAN--A----SEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPET 151 (1049)
T ss_pred ccceeeccccC-CceEEecchhhccC--c----chHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCC
Confidence 68888877 99999999543111 1 11122333779999999999999998999999999999999998765
Q ss_pred CceeeccCCCCceeEEEEeecCCEEE-EEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccce
Q 037120 247 PSLELSTGSHGTLNSIQLHAENQIIF-AAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSK 325 (489)
Q Consensus 247 ~~~~~~~~h~~~v~~~~~~p~~~~l~-~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~ 325 (489)
+..-......+.|.+++|+..-.+++ +++.+|.+.|||+|..+.+-.+..+... ..+..++|+|+...
T Consensus 152 P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~--~~~S~l~WhP~~aT--------- 220 (1049)
T KOG0307|consen 152 PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGR--MHCSVLAWHPDHAT--------- 220 (1049)
T ss_pred CCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCc--cceeeeeeCCCCce---------
Confidence 52211223467899999998765554 5555899999999987766666554432 22566677766521
Q ss_pred eeccceeEEEeCCCCCeEEEEEecCC--ceEEE---------EeeccceeeecCCCCCCcCCCCccccccCCCcceeecC
Q 037120 326 IVSQEIHSIDLDPSCSYQLAFHLDDG--WSGVL---------DVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLST 394 (489)
Q Consensus 326 ~~~~~i~~~~~~p~~~~~~~~~~~~~--w~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (489)
.+++++.++. ...++ +++.+|... +-.+.|.+.
T Consensus 221 ----------------ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~G--------------------ilslsWc~~ 264 (1049)
T KOG0307|consen 221 ----------------QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRG--------------------ILSLSWCPQ 264 (1049)
T ss_pred ----------------eeeeecCCCCCceeEeecccccCCchhhhcccccc--------------------eeeeccCCC
Confidence 1122222222 01222 222333333 334567777
Q ss_pred CcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCC-eEEeccCcceeE
Q 037120 395 NSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN-TIVAGTKNSSLL 473 (489)
Q Consensus 395 ~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~-~i~sgs~dg~i~ 473 (489)
+..++++++.|+.|.+|+..++ +.+.++. .-.+.+..+.|+|..+ .|++++-||.|-
T Consensus 265 D~~lllSsgkD~~ii~wN~~tg----------Evl~~~p------------~~~nW~fdv~w~pr~P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 265 DPRLLLSSGKDNRIICWNPNTG----------EVLGELP------------AQGNWCFDVQWCPRNPSVMAAASFDGKIS 322 (1049)
T ss_pred CchhhhcccCCCCeeEecCCCc----------eEeeecC------------CCCcceeeeeecCCCcchhhhheecccee
Confidence 7899999999999999999999 8888887 6678899999999997 889999999999
Q ss_pred EEeccccc
Q 037120 474 VVSQKQQC 481 (489)
Q Consensus 474 v~~~~~~~ 481 (489)
|++....+
T Consensus 323 I~sl~~~~ 330 (1049)
T KOG0307|consen 323 IYSLQGTD 330 (1049)
T ss_pred eeeeecCC
Confidence 99877655
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=172.00 Aligned_cols=342 Identities=13% Similarity=0.136 Sum_probs=218.7
Q ss_pred cccCCCceeEEEECCCCc---EEEEEecCCeEEEEeCCCcccccC---C------CC-C--CC-CCc----ccccccccC
Q 037120 92 RSFGKPGISALDFDCKGI---YLVSATRSGCLTVHDFESLYYQCN---G------TL-P--GV-GLK----EDQSKHLLH 151 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~---~la~g~~dg~i~vwd~~~~~~~~~---~------~~-~--~~-g~~----~~~~~~~~h 151 (489)
+..|..-|.+++|...+. +||+++.|..||||.+.-...... + ++ + .. +.. .-+.-+.||
T Consensus 187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH 266 (764)
T KOG1063|consen 187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH 266 (764)
T ss_pred eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc
Confidence 345666799999987654 889999999999998753221110 0 00 0 00 000 001122356
Q ss_pred CCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe
Q 037120 152 IPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD 231 (489)
Q Consensus 152 ~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s 231 (489)
..= |.++.|+|.+. .|++++.| .++.+|......+-=...+. +-...|......+..|+|+++ .+++-+
T Consensus 267 eDW---V~sv~W~p~~~-~LLSASaD-ksmiiW~pd~~tGiWv~~vR-----lGe~gg~a~GF~g~lw~~n~~-~ii~~g 335 (764)
T KOG1063|consen 267 EDW---VYSVWWHPEGL-DLLSASAD-KSMIIWKPDENTGIWVDVVR-----LGEVGGSAGGFWGGLWSPNSN-VIIAHG 335 (764)
T ss_pred ccc---eEEEEEccchh-hheecccC-cceEEEecCCccceEEEEEE-----eecccccccceeeEEEcCCCC-EEEEec
Confidence 555 88999999984 66677777 99999987433211111111 111234556789999999998 999999
Q ss_pred CCCcEEEEECCCCC-cCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-----cceeecCCccCCCCe
Q 037120 232 THGVVNIWDRRVGV-LPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-----SAPFHNHKEVCHLPL 305 (489)
Q Consensus 232 ~dg~i~iwd~~~~~-~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-----~~~~~~~~~~~~~~v 305 (489)
.-|..++|-..... ......+.+|.+.|..++|+|.|.+++++|.|.+-|||--- |+. +..-+-|.-. +
T Consensus 336 ~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRPQiHGyD----l 410 (764)
T KOG1063|consen 336 RTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW-GRQQEWHEIARPQIHGYD----L 410 (764)
T ss_pred ccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccc-ccccceeeeccccccccc----c
Confidence 99999999833221 11233456999999999999999999999999999998654 222 1111222222 6
Q ss_pred eEEEeCC-CCcce---------------------------------------------eecc------------------
Q 037120 306 TSLKLAS-MLEKI---------------------------------------------GTLK------------------ 321 (489)
Q Consensus 306 ~~l~~~~-~~~~i---------------------------------------------~~~~------------------ 321 (489)
++++|-+ +-+++ .+.+
T Consensus 411 ~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 411 TCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred eeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 6777666 33333 0000
Q ss_pred ----------------------------ccceeeccceeEEEeCCCCCeEEEEEecCCc--e--EEEEeeccceeeecCC
Q 037120 322 ----------------------------AQSKIVSQEIHSIDLDPSCSYQLAFHLDDGW--S--GVLDVYNSRVSHVHCP 369 (489)
Q Consensus 322 ----------------------------~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w--~--~~~~~~~~~~~~~~~~ 369 (489)
.-...|..+|++++.+|+++.+++++....- . .++++.
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~---------- 560 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTA---------- 560 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEecc----------
Confidence 0112335678999999999998888776551 1 122211
Q ss_pred CCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCC
Q 037120 370 PPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSE 449 (489)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 449 (489)
.|........+.+.+.++.|+|+ +.||++.|.|.++.+|........ .. .....+ .|..
T Consensus 561 --~W~~~~~L~~HsLTVT~l~FSpd-g~~LLsvsRDRt~sl~~~~~~~~~--e~----~fa~~k------------~HtR 619 (764)
T KOG1063|consen 561 --NWLQVQELEGHSLTVTRLAFSPD-GRYLLSVSRDRTVSLYEVQEDIKD--EF----RFACLK------------AHTR 619 (764)
T ss_pred --chhhhheecccceEEEEEEECCC-CcEEEEeecCceEEeeeeecccch--hh----hhcccc------------ccce
Confidence 12222222222333445566666 678888999999999998655100 00 011133 8999
Q ss_pred ceEEEEeeCCCCeEEeccCcceeEEEecccc
Q 037120 450 GVTACVTHPLNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 450 ~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
-|.+++|+|++.++||+|.|.++.||...+.
T Consensus 620 IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 620 IIWDCSWSPDEKYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred EEEEcccCcccceeEEecCCceEEEEeccCc
Confidence 9999999999999999999999999987765
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.9e-19 Score=169.33 Aligned_cols=182 Identities=16% Similarity=0.204 Sum_probs=136.4
Q ss_pred eeEEEECCC--CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 99 ISALDFDCK--GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 99 V~~~~fs~~--g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
|+++ ++|. =+.++.|+.+|.+++|++.+.+.+.. + .++... |+++.-+|--. +++.|..
T Consensus 162 Ital-~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~--------f------~~~~s~---IT~ieqsPaLD-VVaiG~~ 222 (910)
T KOG1539|consen 162 ITAL-LHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYT--------F------QEFFSR---ITAIEQSPALD-VVAIGLE 222 (910)
T ss_pred eeeE-ecchhheeeEEEeecCCcEEEEEeccCcEEEE--------e------cccccc---eeEeccCCcce-EEEEecc
Confidence 7776 5676 36789999999999999999655542 2 223333 99999998764 8888888
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~ 256 (489)
+ |+|.|++++.. +.+...+ ...+.|++++|.-||..++++|+..|.+.+||++..+.. ......|.
T Consensus 223 ~-G~ViifNlK~d-----kil~sFk-------~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~-~v~~nah~ 288 (910)
T KOG1539|consen 223 N-GTVIIFNLKFD-----KILMSFK-------QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLI-NVTRNAHY 288 (910)
T ss_pred C-ceEEEEEcccC-----cEEEEEE-------ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeee-eeeecccc
Confidence 8 99999999433 3333322 124799999999999988899998899999999976533 22344899
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc----cceeecCCccCCCCeeEEEeC-CCCcce
Q 037120 257 GTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT----SAPFHNHKEVCHLPLTSLKLA-SMLEKI 317 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~----~~~~~~~~~~~~~~v~~l~~~-~~~~~i 317 (489)
+.|..+.|-|..+.+++++.|+.+++|=.+++.- ++.-.+|..+ ..++.|. ..|..+
T Consensus 289 ~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~P----p~~irfy~~~g~~i 350 (910)
T KOG1539|consen 289 GSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAP----PSCIRFYGSQGHFI 350 (910)
T ss_pred CCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCC----chheeeeccCcEEE
Confidence 9999999999999999999999999886554432 5555677755 7888877 344444
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.7e-20 Score=170.67 Aligned_cols=171 Identities=14% Similarity=0.120 Sum_probs=126.3
Q ss_pred ccCCCceeEEEECCC-CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 93 SFGKPGISALDFDCK-GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~-g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
..|..-|..+.|+|- ..+||+|+.|..|+||.+..+....- ..+... .+|.. ..|-++.|+|...+++
T Consensus 76 ~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L--------Sape~~-~g~~~--~~vE~l~fHpTaDgil 144 (1012)
T KOG1445|consen 76 AAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL--------SAPEID-VGGGN--VIVECLRFHPTADGIL 144 (1012)
T ss_pred ecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc--------CCccee-ecCCc--eEEEEeecccCcCceE
Confidence 445566999999995 46889999999999999985333221 011111 12221 2288999999999999
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++ .|+++|||+.... ....+.+|.+.|.+..|+.||. ++++++.|..|+|||-|.... .++.
T Consensus 145 ~s~a--~g~v~i~D~stqk------------~~~el~~h~d~vQSa~WseDG~-llatscKdkqirifDPRa~~~-piQ~ 208 (1012)
T KOG1445|consen 145 ASGA--HGSVYITDISTQK------------TAVELSGHTDKVQSADWSEDGK-LLATSCKDKQIRIFDPRASME-PIQT 208 (1012)
T ss_pred Eecc--CceEEEEEcccCc------------eeecccCCchhhhccccccCCc-eEeeecCCcceEEeCCccCCC-cccc
Confidence 9999 7999999994321 1223488999999999999999 999999999999999998544 3556
Q ss_pred ccCCCCc-eeEEEEeecCCEEEEEeCC----CeEEEEEcCCCcc
Q 037120 252 STGSHGT-LNSIQLHAENQIIFAAGKH----GSIYLWDLRGGRT 290 (489)
Q Consensus 252 ~~~h~~~-v~~~~~~p~~~~l~~~~~d----g~i~lwd~~~~~~ 290 (489)
..+|.+- =.-+.|.-+-..|+++|.+ ..|++||.+....
T Consensus 209 te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~ 252 (1012)
T KOG1445|consen 209 TEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGA 252 (1012)
T ss_pred ccccccchhheeeeccchhhhhhcccchhhheeeeeeeccccCC
Confidence 6777643 2356777666678888763 5699999987543
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.8e-19 Score=150.65 Aligned_cols=290 Identities=13% Similarity=0.178 Sum_probs=180.4
Q ss_pred cccccCCCceeEEEECCCC-cEEEEEecC-------CeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEE
Q 037120 90 HRRSFGKPGISALDFDCKG-IYLVSATRS-------GCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAV 161 (489)
Q Consensus 90 ~~~~~~~~~V~~~~fs~~g-~~la~g~~d-------g~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v 161 (489)
..|..+...|..++-+|-. ..|+++..+ -.+.||.+......... .+++... ..-+.....|.|+
T Consensus 57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~-----~tlE~v~--~Ldteavg~i~cv 129 (370)
T KOG1007|consen 57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNS-----STLECVA--SLDTEAVGKINCV 129 (370)
T ss_pred hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcccc-----chhhHhh--cCCHHHhCceeeE
Confidence 3455555669999999865 455665441 24689988762222100 0111110 0111122239999
Q ss_pred EeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCC-cEEEEEeCCCcEEEEE
Q 037120 162 RWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT-SRLIASDTHGVVNIWD 240 (489)
Q Consensus 162 ~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~s~dg~i~iwd 240 (489)
.|.|++. .+++.. ++.|.+|++...+... ..+..... .+|....++-+|+|..+ +.+++.+ |+++..||
T Consensus 130 ew~Pns~-klasm~--dn~i~l~~l~ess~~v-aev~ss~s-----~e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D 199 (370)
T KOG1007|consen 130 EWEPNSD-KLASMD--DNNIVLWSLDESSKIV-AEVLSSES-----AEMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWD 199 (370)
T ss_pred EEcCCCC-eeEEec--cCceEEEEcccCcchh-eeeccccc-----ccccceecccccCCCCccceEEEeC-CCcEEEEE
Confidence 9999775 676666 5899999996554321 22222211 45777888999999433 2666555 89999999
Q ss_pred CCCCCcCceeeccCCCCceeEEEEeecCCEE-EEEeCCCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCCCccee
Q 037120 241 RRVGVLPSLELSTGSHGTLNSIQLHAENQII-FAAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 241 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l-~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
+|+.+.. ..+..+|...|..+.|+|+-+++ +++|.||.|+|||.|+.+. +..+.+|... |.++.|+|.-
T Consensus 200 ~RT~~~~-~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHW----vW~VRfn~~h---- 270 (370)
T KOG1007|consen 200 LRTMKKN-NSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHW----VWAVRFNPEH---- 270 (370)
T ss_pred ccchhhh-cchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceE----EEEEEecCcc----
Confidence 9986533 33445888899999999998765 4556699999999998765 8888888888 8887777642
Q ss_pred eccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEE
Q 037120 319 TLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIY 398 (489)
Q Consensus 319 ~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (489)
..+
T Consensus 271 -----------------------------------------------------------------------------dqL 273 (370)
T KOG1007|consen 271 -----------------------------------------------------------------------------DQL 273 (370)
T ss_pred -----------------------------------------------------------------------------ceE
Confidence 334
Q ss_pred EEeecCCCcEEEEeccCCCCCCeeeccC--c---ccchhhHhhh--h-cccCCcccCCCceEEEEeeCCCC-eEEeccCc
Q 037120 399 AVGSSSDHGIHLLDFFPGSSSPSHVDYN--E---DIESLSERTK--L-KKENRFVPLSEGVTACVTHPLNN-TIVAGTKN 469 (489)
Q Consensus 399 l~sgs~d~~i~vwd~~~~~~~~~~~~~~--~---~~~~~~~~~~--~-~~~~~~~~h~~~V~~va~~p~~~-~i~sgs~d 469 (489)
+++||.|..|.+|...+-...+ ++... + .......+.+ + +....+-.|++.|.+++|+...+ .||+=+.|
T Consensus 274 iLs~~SDs~V~Lsca~svSSE~-qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYD 352 (370)
T KOG1007|consen 274 ILSGGSDSAVNLSCASSVSSEQ-QIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYD 352 (370)
T ss_pred EEecCCCceeEEEecccccccc-ccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccC
Confidence 5555556666665554332111 11000 0 0000000000 0 01113448999999999999888 67888999
Q ss_pred ceeEEEeccccccc
Q 037120 470 SSLLVVSQKQQCTS 483 (489)
Q Consensus 470 g~i~v~~~~~~~~~ 483 (489)
|++.|=..++.-..
T Consensus 353 GRviIs~V~r~~ky 366 (370)
T KOG1007|consen 353 GRVIISSVPRFLKY 366 (370)
T ss_pred ceEEeecCChhhhh
Confidence 99998666655433
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.7e-20 Score=166.54 Aligned_cols=308 Identities=16% Similarity=0.115 Sum_probs=209.9
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCC-CE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQ-DE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~-~~ 170 (489)
+..|...|+.+.|+..|..|++|+.|..|.+||+........ -..+|... |....|-|... .-
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~-------------f~SGH~~N---vfQaKFiP~s~d~t 201 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS-------------FESGHCNN---VFQAKFIPFSGDRT 201 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc-------------cccccccc---hhhhhccCCCCCcC
Confidence 566777799999999999999999999999999998443321 11457766 44477877642 35
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-ce
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-SL 249 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~ 249 (489)
+++++.| |.|++=.+.... .+.... .+..|.+.|..++.-|+.++.|.+++.|+.+.-.|+++.... .+
T Consensus 202 i~~~s~d-gqvr~s~i~~t~----~~e~t~-----rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~ 271 (559)
T KOG1334|consen 202 IVTSSRD-GQVRVSEILETG----YVENTK-----RLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKF 271 (559)
T ss_pred ceecccc-Cceeeeeecccc----ceecce-----ecccccCccceeeecCCCCCcccccccccceeeeeeccCCcccee
Confidence 6677777 999988873211 111111 136799999999999999999999999999999999986432 12
Q ss_pred eeccCCCC---ceeEEEEeecCC-EEEEEeCCCeEEEEEcCCCcc------cceeecCCc--cCCCCeeEEEeCCCCc-c
Q 037120 250 ELSTGSHG---TLNSIQLHAENQ-IIFAAGKHGSIYLWDLRGGRT------SAPFHNHKE--VCHLPLTSLKLASMLE-K 316 (489)
Q Consensus 250 ~~~~~h~~---~v~~~~~~p~~~-~l~~~~~dg~i~lwd~~~~~~------~~~~~~~~~--~~~~~v~~l~~~~~~~-~ 316 (489)
.....+.. ..++++.+|.+. .+++++.|-.+++||.+.... +..|..|.- .....|++++|+.++. .
T Consensus 272 ~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl 351 (559)
T KOG1334|consen 272 VCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSEL 351 (559)
T ss_pred eeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccce
Confidence 12223334 678999999887 566667799999999987432 233322110 0013488888886664 4
Q ss_pred eeeccccceeeccceeEEEeCCCCCeEEEEEecCC-----c---eEEEE-eeccceeeecCCCCCCcCCCCccccccCCC
Q 037120 317 IGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDG-----W---SGVLD-VYNSRVSHVHCPPPAWLSDSNNSADQLHLR 387 (489)
Q Consensus 317 i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~-----w---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (489)
+++.... .-|+..-....+ - ..... +|+||.+.-. ++
T Consensus 352 LaSYnDe----------------~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~T------------------VK 397 (559)
T KOG1334|consen 352 LASYNDE----------------DIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRT------------------VK 397 (559)
T ss_pred eeeeccc----------------ceEEeccccccCCCCCCCcchhhccchhhcccccccc------------------cc
Confidence 4432211 111111011111 0 01222 3667765432 12
Q ss_pred cceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEecc
Q 037120 388 KPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGT 467 (489)
Q Consensus 388 ~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs 467 (489)
.+-|.-....|+++||+-|.|.||+-.++ +++..++ +-...|+|+.-||..+.||++|
T Consensus 398 gVNFfGPrsEyVvSGSDCGhIFiW~K~t~----------eii~~Me------------gDr~VVNCLEpHP~~PvLAsSG 455 (559)
T KOG1334|consen 398 GVNFFGPRSEYVVSGSDCGHIFIWDKKTG----------EIIRFME------------GDRHVVNCLEPHPHLPVLASSG 455 (559)
T ss_pred eeeeccCccceEEecCccceEEEEecchh----------HHHHHhh------------cccceEeccCCCCCCchhhccC
Confidence 22333333889999999999999999999 8998888 6666999999999999999999
Q ss_pred CcceeEEEeccccc
Q 037120 468 KNSSLLVVSQKQQC 481 (489)
Q Consensus 468 ~dg~i~v~~~~~~~ 481 (489)
.|-.|+||+.....
T Consensus 456 id~DVKIWTP~~~e 469 (559)
T KOG1334|consen 456 IDHDVKIWTPLTAE 469 (559)
T ss_pred CccceeeecCCccc
Confidence 99999999885443
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-19 Score=168.32 Aligned_cols=234 Identities=15% Similarity=0.234 Sum_probs=174.7
Q ss_pred eEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCC
Q 037120 100 SALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSN 179 (489)
Q Consensus 100 ~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g 179 (489)
+=++|+. .+.||+|. ...|.+|+..+...... . ..+ ...|+++.|++++. .|+.|..+ |
T Consensus 181 nlldWss-~n~laVal-g~~vylW~~~s~~v~~l--------~------~~~---~~~vtSv~ws~~G~-~LavG~~~-g 239 (484)
T KOG0305|consen 181 NLLDWSS-ANVLAVAL-GQSVYLWSASSGSVTEL--------C------SFG---EELVTSVKWSPDGS-HLAVGTSD-G 239 (484)
T ss_pred hHhhccc-CCeEEEEe-cceEEEEecCCCceEEe--------E------ecC---CCceEEEEECCCCC-EEEEeecC-C
Confidence 3455663 44666665 45799999988543321 0 111 22399999999996 77777777 9
Q ss_pred EEEEEEeccCCCCCceeeeeceeeeeecCC-cccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCc
Q 037120 180 VVSIYDIGYISDEPVEVLKTRRSVTVVGSD-VQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGT 258 (489)
Q Consensus 180 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~ 258 (489)
.|.|||..... ..+. +.+ |...|-+++|. +. .+.+|+.|+.|..+|++..+.. ...+.+|...
T Consensus 240 ~v~iwD~~~~k--------~~~~----~~~~h~~rvg~laW~--~~-~lssGsr~~~I~~~dvR~~~~~-~~~~~~H~qe 303 (484)
T KOG0305|consen 240 TVQIWDVKEQK--------KTRT----LRGSHASRVGSLAWN--SS-VLSSGSRDGKILNHDVRISQHV-VSTLQGHRQE 303 (484)
T ss_pred eEEEEehhhcc--------cccc----ccCCcCceeEEEecc--Cc-eEEEecCCCcEEEEEEecchhh-hhhhhcccce
Confidence 99999993221 1222 245 99999999998 44 8999999999999999987633 3347799999
Q ss_pred eeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCC
Q 037120 259 LNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDP 338 (489)
Q Consensus 259 v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p 338 (489)
|..+.|++++.++++||.|+.+.|||......+..+..|..+ |.+++|+|--.
T Consensus 304 VCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aA----VKA~awcP~q~----------------------- 356 (484)
T KOG0305|consen 304 VCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAA----VKALAWCPWQS----------------------- 356 (484)
T ss_pred eeeeEECCCCCeeccCCCccceEeccCCCccccEEEecccee----eeEeeeCCCcc-----------------------
Confidence 999999999999999999999999999877778888888877 88888876321
Q ss_pred CCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEE-eecCCCcEEEEeccCCC
Q 037120 339 SCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAV-GSSSDHGIHLLDFFPGS 417 (489)
Q Consensus 339 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-sgs~d~~i~vwd~~~~~ 417 (489)
+.+++ +|+.|++|++||..++
T Consensus 357 ---------------------------------------------------------~lLAsGGGs~D~~i~fwn~~~g- 378 (484)
T KOG0305|consen 357 ---------------------------------------------------------GLLATGGGSADRCIKFWNTNTG- 378 (484)
T ss_pred ---------------------------------------------------------CceEEcCCCcccEEEEEEcCCC-
Confidence 11111 3678999999999998
Q ss_pred CCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEec--cCcceeEEEec
Q 037120 418 SSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAG--TKNSSLLVVSQ 477 (489)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sg--s~dg~i~v~~~ 477 (489)
+.+..+. -...|..+.|+|..+.|+++ -.+..|.||.-
T Consensus 379 ---------~~i~~vd-------------tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ 418 (484)
T KOG0305|consen 379 ---------ARIDSVD-------------TGSQVCSLIWSKKYKELLSTHGYSENQITLWKY 418 (484)
T ss_pred ---------cEecccc-------------cCCceeeEEEcCCCCEEEEecCCCCCcEEEEec
Confidence 6666554 45679999999998766554 24667777754
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.2e-20 Score=167.69 Aligned_cols=254 Identities=14% Similarity=0.220 Sum_probs=162.2
Q ss_pred ccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcE
Q 037120 147 KHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSR 226 (489)
Q Consensus 147 ~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 226 (489)
.+.+|+.. |+++++.|.|. .|++|+.| .+|++||+....... ..++... ..-...|++++|++.+. .
T Consensus 162 ~l~hgtk~---Vsal~~Dp~Ga-R~~sGs~D-y~v~~wDf~gMdas~-~~fr~l~------P~E~h~i~sl~ys~Tg~-~ 228 (641)
T KOG0772|consen 162 QLKHGTKI---VSALAVDPSGA-RFVSGSLD-YTVKFWDFQGMDASM-RSFRQLQ------PCETHQINSLQYSVTGD-Q 228 (641)
T ss_pred eccCCceE---EEEeeecCCCc-eeeecccc-ceEEEEecccccccc-hhhhccC------cccccccceeeecCCCC-e
Confidence 34556666 99999999996 88999999 999999996543321 1121111 22345899999999999 8
Q ss_pred EEEEeCCCcEEEEECCCCCcC-c---------eeeccCCCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCCCcc-ccee
Q 037120 227 LIASDTHGVVNIWDRRVGVLP-S---------LELSTGSHGTLNSIQLHAENQ-IIFAAGKHGSIYLWDLRGGRT-SAPF 294 (489)
Q Consensus 227 l~s~s~dg~i~iwd~~~~~~~-~---------~~~~~~h~~~v~~~~~~p~~~-~l~~~~~dg~i~lwd~~~~~~-~~~~ 294 (489)
|+..+.....+|+|-.-.+.. + +...++|...++|.+|+|..+ .+++++.||++||||+.+.+. +..|
T Consensus 229 iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVi 308 (641)
T KOG0772|consen 229 ILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVI 308 (641)
T ss_pred EEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEE
Confidence 888888889999996532210 1 123449999999999999765 466777799999999998665 3444
Q ss_pred ecCC-ccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCC---ce-------EEEEeeccce
Q 037120 295 HNHK-EVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDG---WS-------GVLDVYNSRV 363 (489)
Q Consensus 295 ~~~~-~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~---w~-------~~~~~~~~~~ 363 (489)
+... +....+++.++|+ ++++.+++++.|+. |. ....+...|.
T Consensus 309 k~k~~~g~Rv~~tsC~~n--------------------------rdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~ 362 (641)
T KOG0772|consen 309 KTKPAGGKRVPVTSCAWN--------------------------RDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHL 362 (641)
T ss_pred eeccCCCcccCceeeecC--------------------------CCcchhhhcccCCceeeeecCCcccccceEeeeccC
Confidence 3211 1112334455555 55555444444444 32 1122222232
Q ss_pred e--eecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhccc
Q 037120 364 S--HVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKE 441 (489)
Q Consensus 364 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (489)
. .+.|+ .|+.+ +.+|++=+.|++++|||+.... +.+.... +.
T Consensus 363 ~g~~Itsi--~FS~d-------------------g~~LlSRg~D~tLKvWDLrq~k---------kpL~~~t-----gL- 406 (641)
T KOG0772|consen 363 PGQDITSI--SFSYD-------------------GNYLLSRGFDDTLKVWDLRQFK---------KPLNVRT-----GL- 406 (641)
T ss_pred CCCceeEE--Eeccc-------------------cchhhhccCCCceeeeeccccc---------cchhhhc-----CC-
Confidence 2 22222 34444 7888999999999999998661 2222222 00
Q ss_pred CCcccCCCceEEEEeeCCCCeEEeccC------cceeEEEeccc
Q 037120 442 NRFVPLSEGVTACVTHPLNNTIVAGTK------NSSLLVVSQKQ 479 (489)
Q Consensus 442 ~~~~~h~~~V~~va~~p~~~~i~sgs~------dg~i~v~~~~~ 479 (489)
...-+-+.++|+|+...|++|+. .|.+++|....
T Consensus 407 ----~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t 446 (641)
T KOG0772|consen 407 ----PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMT 446 (641)
T ss_pred ----CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccc
Confidence 12234578999999999999863 46677776543
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.2e-20 Score=173.00 Aligned_cols=245 Identities=18% Similarity=0.266 Sum_probs=173.5
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC--CCC
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA--NQD 169 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~--~~~ 169 (489)
....+.||+|++.+|+|++||+|..-|.++||++...+... . ...|..+ |.|+.|+.. +..
T Consensus 455 ~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~--------~------~eAHesE---ilcLeyS~p~~~~k 517 (1080)
T KOG1408|consen 455 TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTC--------F------MEAHESE---ILCLEYSFPVLTNK 517 (1080)
T ss_pred hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhh--------h------eecccce---eEEEeecCchhhhH
Confidence 34456789999999999999999999999999999855444 1 2346666 999999743 345
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCC-cEEEEEeCCCcEEEEECCCCCcCc
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT-SRLIASDTHGVVNIWDRRVGVLPS 248 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~ 248 (489)
+|++++.| ..|+|||+.. .. ....++.+|+..|+++.|--.|- ..+++++.|..|.+--.+... .
T Consensus 518 LLASasrd-RlIHV~Dv~r-------ny----~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~--~ 583 (1080)
T KOG1408|consen 518 LLASASRD-RLIHVYDVKR-------NY----DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKAS--S 583 (1080)
T ss_pred hhhhccCC-ceEEEEeccc-------cc----chhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhcccc--C
Confidence 89999998 9999999921 11 22334589999999999987772 378999999988543322111 1
Q ss_pred eeeccC-----CCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeecccc
Q 037120 249 LELSTG-----SHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQ 323 (489)
Q Consensus 249 ~~~~~~-----h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~ 323 (489)
...+.. ....++.++..|+..++++++.|..|+|||+.+++..+.|++..+. +|
T Consensus 584 g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~------------eG--------- 642 (1080)
T KOG1408|consen 584 GRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDH------------EG--------- 642 (1080)
T ss_pred ceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccC------------CC---------
Confidence 111221 1357889999999999999999999999999999999999864322 11
Q ss_pred ceeeccceeEEEeCCCCCeEEEEEecCCceEEEEee--------ccceeeecCCCCCCcCCCCccccccCCCcceeecCC
Q 037120 324 SKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVY--------NSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTN 395 (489)
Q Consensus 324 ~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (489)
....+..+|.|.|+++.+.|.+.. +++.+ .||...+... .|..+
T Consensus 643 ------~lIKv~lDPSgiY~atScsdktl~-~~Df~sgEcvA~m~GHsE~VTG~--kF~nD------------------- 694 (1080)
T KOG1408|consen 643 ------DLIKVILDPSGIYLATSCSDKTLC-FVDFVSGECVAQMTGHSEAVTGV--KFLND------------------- 694 (1080)
T ss_pred ------ceEEEEECCCccEEEEeecCCceE-EEEeccchhhhhhcCcchheeee--eeccc-------------------
Confidence 123355667777777776666532 33333 3433332222 33333
Q ss_pred cEEEEeecCCCcEEEEeccCC
Q 037120 396 SIYAVGSSSDHGIHLLDFFPG 416 (489)
Q Consensus 396 ~~~l~sgs~d~~i~vwd~~~~ 416 (489)
-+.+++.+.||+|.||.+...
T Consensus 695 CkHlISvsgDgCIFvW~lp~~ 715 (1080)
T KOG1408|consen 695 CKHLISVSGDGCIFVWKLPLT 715 (1080)
T ss_pred chhheeecCCceEEEEECchh
Confidence 567888999999999998754
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.7e-19 Score=151.84 Aligned_cols=241 Identities=16% Similarity=0.192 Sum_probs=157.8
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
|++|.|+|.+..+|++.. ||++++||+.... + ... -.|..++.+++|.++. .+++|+.||.|+
T Consensus 16 IS~v~f~~~~~~LLvssW--DgslrlYdv~~~~------l--~~~-----~~~~~plL~c~F~d~~--~~~~G~~dg~vr 78 (323)
T KOG1036|consen 16 ISSVKFSPSSSDLLVSSW--DGSLRLYDVPANS------L--KLK-----FKHGAPLLDCAFADES--TIVTGGLDGQVR 78 (323)
T ss_pred eeeEEEcCcCCcEEEEec--cCcEEEEeccchh------h--hhh-----eecCCceeeeeccCCc--eEEEeccCceEE
Confidence 999999998877777665 4999999994331 1 111 3477899999999744 699999999999
Q ss_pred EEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 238 IWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
.+|+.++.. . .+..|..+|.|+..++-...+++||.|++|++||.|.......+.. .+. |.++.
T Consensus 79 ~~Dln~~~~--~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kk----Vy~~~-------- 142 (323)
T KOG1036|consen 79 RYDLNTGNE--D-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKK----VYCMD-------- 142 (323)
T ss_pred EEEecCCcc--e-eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc-Cce----EEEEe--------
Confidence 999999862 2 4558999999999999989999999999999999997333333221 112 33332
Q ss_pred eeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcE
Q 037120 318 GTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSI 397 (489)
Q Consensus 318 ~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (489)
. .+..+++++.+... .++++.. ... .+ ....+...+..|.++..|++.-
T Consensus 143 ------------------v--~g~~LvVg~~~r~v-~iyDLRn---~~~-----~~--q~reS~lkyqtR~v~~~pn~eG 191 (323)
T KOG1036|consen 143 ------------------V--SGNRLVVGTSDRKV-LIYDLRN---LDE-----PF--QRRESSLKYQTRCVALVPNGEG 191 (323)
T ss_pred ------------------c--cCCEEEEeecCceE-EEEEccc---ccc-----hh--hhccccceeEEEEEEEecCCCc
Confidence 2 23344444443320 1111111 000 00 0011111244566778887777
Q ss_pred EEEeecCCCcEEEEeccCCC-------CCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcc
Q 037120 398 YAVGSSSDHGIHLLDFFPGS-------SSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNS 470 (489)
Q Consensus 398 ~l~sgs~d~~i~vwd~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg 470 (489)
|+++ |-||.|.+=.+.... +.+||.....-. ...-+|++++|||-..+|||||.||
T Consensus 192 y~~s-SieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~----------------~~~yPVNai~Fhp~~~tfaTgGsDG 254 (323)
T KOG1036|consen 192 YVVS-SIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDT----------------EIIYPVNAIAFHPIHGTFATGGSDG 254 (323)
T ss_pred eEEE-eecceEEEEccCCchHHhhhceeEEeeecccCCc----------------eEEEEeceeEeccccceEEecCCCc
Confidence 7765 789988876665541 011322211111 1123799999999999999999999
Q ss_pred eeEEEeccc
Q 037120 471 SLLVVSQKQ 479 (489)
Q Consensus 471 ~i~v~~~~~ 479 (489)
.|.+|....
T Consensus 255 ~V~~Wd~~~ 263 (323)
T KOG1036|consen 255 IVNIWDLFN 263 (323)
T ss_pred eEEEccCcc
Confidence 999996543
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.6e-19 Score=155.83 Aligned_cols=328 Identities=14% Similarity=0.108 Sum_probs=200.1
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCccccccccc--CCCCCCceeEEEeeCCCCC
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLL--HIPLPQQLDAVRWNLANQD 169 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~--h~~~~~~V~~v~~~~~~~~ 169 (489)
+..|...|++|.|+.++++||+|+.|-.++||+++..-.... ..+ ....+ |.+. |.|++|+..+.
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~--------~KP-I~~~~~~H~SN---IF~L~F~~~N~- 118 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT--------PKP-IGVMEHPHRSN---IFSLEFDLENR- 118 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC--------CCC-ceeccCccccc---eEEEEEccCCe-
Confidence 445666799999999999999999999999999876322221 011 11122 4455 99999998764
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-c
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-S 248 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~ 248 (489)
.+.+|..+ ++|.+-|+... +.+.-.. -....+.|+.+..+|.++ .|++.+.++.|.+||.+....+ .
T Consensus 119 ~~~SG~~~-~~VI~HDiEt~-----qsi~V~~-----~~~~~~~VY~m~~~P~DN-~~~~~t~~~~V~~~D~Rd~~~~~~ 186 (609)
T KOG4227|consen 119 FLYSGERW-GTVIKHDIETK-----QSIYVAN-----ENNNRGDVYHMDQHPTDN-TLIVVTRAKLVSFIDNRDRQNPIS 186 (609)
T ss_pred eEecCCCc-ceeEeeecccc-----eeeeeec-----ccCcccceeecccCCCCc-eEEEEecCceEEEEeccCCCCCCc
Confidence 88888888 99999999322 2221111 133456999999999977 9999999999999999976544 1
Q ss_pred eeeccCCCCceeEEEEeecCCEEEEE-eCCCeEEEEEcCCCcc-cceeecCCccC--CCCeeEEEeCCCCcceeeccccc
Q 037120 249 LELSTGSHGTLNSIQLHAENQIIFAA-GKHGSIYLWDLRGGRT-SAPFHNHKEVC--HLPLTSLKLASMLEKIGTLKAQS 324 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~~~~l~~~-~~dg~i~lwd~~~~~~-~~~~~~~~~~~--~~~v~~l~~~~~~~~i~~~~~~~ 324 (489)
............++.|+|..+.|++. +..+-+.+||.+.... +....+..+.. ...-.++.|+|.|..+.++....
T Consensus 187 ~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~ 266 (609)
T KOG4227|consen 187 LVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGK 266 (609)
T ss_pred eeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccC
Confidence 21223334567899999987655554 5588899999998654 33222111110 01146788999997776544221
Q ss_pred eeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecC
Q 037120 325 KIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSS 404 (489)
Q Consensus 325 ~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~ 404 (489)
. +++ ..|. ..++.++..|..-.+..+. ..-...+|.. ...+++||.
T Consensus 267 ~----P~~-~D~~--S~R~~V~k~D~N~~GY~N~-------~T~KS~~F~~--------------------D~~v~tGSD 312 (609)
T KOG4227|consen 267 C----PLY-FDFI--SQRCFVLKSDHNPNGYCNI-------KTIKSMTFID--------------------DYTVATGSD 312 (609)
T ss_pred C----CEE-eeee--cccceeEeccCCCCcceee-------eeeeeeeeec--------------------ceeeeccCc
Confidence 1 111 1111 1111222112110000000 0000012222 344889999
Q ss_pred CCcEEEEeccCCCCCC--eeeccC--cccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccc
Q 037120 405 DHGIHLLDFFPGSSSP--SHVDYN--EDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 405 d~~i~vwd~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
+-.|++|.+.....+- ..+..+ +....+-. ......+.||...++.|-|+|...+|++.|....+++|+.-+.
T Consensus 313 ~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i---~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~r~ 389 (609)
T KOG4227|consen 313 HWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFI---EKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSDHRL 389 (609)
T ss_pred ccceEEEecCCCccccCccccCcchhhCchhhee---cceeEEEecccccccceeecCCcceEeccchhhheeccccccC
Confidence 9999999987552111 001110 00000000 0000112499999999999999999999999999999998665
Q ss_pred c
Q 037120 481 C 481 (489)
Q Consensus 481 ~ 481 (489)
.
T Consensus 390 P 390 (609)
T KOG4227|consen 390 P 390 (609)
T ss_pred C
Confidence 3
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.2e-18 Score=159.34 Aligned_cols=267 Identities=11% Similarity=0.063 Sum_probs=163.0
Q ss_pred CceeEEEECCCCcEE-EEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 97 PGISALDFDCKGIYL-VSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 97 ~~V~~~~fs~~g~~l-a~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
..+.+++|+|+|..+ ++++.++.|++||..+.+.... + ..+. . +..++|+|++..+++++.
T Consensus 31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~--------~------~~~~-~---~~~~~~~~~g~~l~~~~~ 92 (300)
T TIGR03866 31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT--------L------PSGP-D---PELFALHPNGKILYIANE 92 (300)
T ss_pred CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe--------c------cCCC-C---ccEEEECCCCCEEEEEcC
Confidence 346789999999876 6677899999999987443321 1 1111 1 456899999875555555
Q ss_pred cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCC-cEEEEECCCCCcCceeeccC
Q 037120 176 TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG-VVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~ 254 (489)
.+ +.|++||+... ..+... . +...+.+++|+|++. .+++++.++ .+.+||.++++ ......
T Consensus 93 ~~-~~l~~~d~~~~-----~~~~~~-------~-~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~~~--~~~~~~- 154 (300)
T TIGR03866 93 DD-NLVTVIDIETR-----KVLAEI-------P-VGVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKTYE--IVDNVL- 154 (300)
T ss_pred CC-CeEEEEECCCC-----eEEeEe-------e-CCCCcceEEECCCCC-EEEEEecCCCeEEEEeCCCCe--EEEEEE-
Confidence 56 99999999432 111111 1 123467899999999 888777664 57788988765 332221
Q ss_pred CCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeE
Q 037120 255 SHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHS 333 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~ 333 (489)
......+++|+|+++.+++++. ++.|++||+++++.+..+..+... +. + .......
T Consensus 155 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~----~~-----~--------------~~~~~~~ 211 (300)
T TIGR03866 155 VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPG----VH-----P--------------EAVQPVG 211 (300)
T ss_pred cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccc----cc-----c--------------ccCCccc
Confidence 2334678999999998876654 999999999998765555422111 00 0 0000123
Q ss_pred EEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEec
Q 037120 334 IDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDF 413 (489)
Q Consensus 334 ~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~ 413 (489)
+.++|+++++++...++....+++..++.+...... . .....++|.|++..++++++.++.|+|||+
T Consensus 212 i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~------~-------~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~ 278 (300)
T TIGR03866 212 IKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV------G-------QRVWQLAFTPDEKYLLTTNGVSNDVSVIDV 278 (300)
T ss_pred eEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe------C-------CCcceEEECCCCCEEEEEcCCCCeEEEEEC
Confidence 445555554433322222122333333322211100 0 012346788887777766678999999999
Q ss_pred cCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeC
Q 037120 414 FPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHP 458 (489)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p 458 (489)
.++ +.+..++ . ....++++++|
T Consensus 279 ~~~----------~~~~~~~------------~-~~~~~~~~~~~ 300 (300)
T TIGR03866 279 AAL----------KVIKSIK------------V-GRLPWGVVVRP 300 (300)
T ss_pred CCC----------cEEEEEE------------c-ccccceeEeCC
Confidence 998 7766665 2 34558888776
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.4e-19 Score=156.15 Aligned_cols=153 Identities=14% Similarity=0.178 Sum_probs=125.6
Q ss_pred cccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEE
Q 037120 148 HLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRL 227 (489)
Q Consensus 148 ~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 227 (489)
..||+.. |..++|+|.+.+.+++|++| .+|.||++... ............|.+|...|.-++|+|.-.+.|
T Consensus 77 v~GHt~~---vLDi~w~PfnD~vIASgSeD-~~v~vW~IPe~-----~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVL 147 (472)
T KOG0303|consen 77 VCGHTAP---VLDIDWCPFNDCVIASGSED-TKVMVWQIPEN-----GLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVL 147 (472)
T ss_pred ccCcccc---ccccccCccCCceeecCCCC-ceEEEEECCCc-----ccccCcccceEEEeecceeEEEEeecccchhhH
Confidence 4678888 77799999999999999999 99999999432 122223334555799999999999999999999
Q ss_pred EEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeE
Q 037120 228 IASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTS 307 (489)
Q Consensus 228 ~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~ 307 (489)
++++.|.+|.+||+.+++ .+-.+ .|.+-|.++.|+.+|.++++++.|..|||||.++++.+..-.+|.+. .+...
T Consensus 148 lsag~Dn~v~iWnv~tge--ali~l-~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~--k~~Ra 222 (472)
T KOG0303|consen 148 LSAGSDNTVSIWNVGTGE--ALITL-DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA--KPARA 222 (472)
T ss_pred hhccCCceEEEEeccCCc--eeeec-CCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC--Cccee
Confidence 999999999999999987 33233 49999999999999999999999999999999999998887888876 33333
Q ss_pred EEeCCCCc
Q 037120 308 LKLASMLE 315 (489)
Q Consensus 308 l~~~~~~~ 315 (489)
-|-.+|.
T Consensus 223 -ifl~~g~ 229 (472)
T KOG0303|consen 223 -IFLASGK 229 (472)
T ss_pred -EEeccCc
Confidence 3444544
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.9e-19 Score=153.55 Aligned_cols=264 Identities=14% Similarity=0.223 Sum_probs=178.6
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccC-----------------CCCCC-CC--------Ccccc
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCN-----------------GTLPG-VG--------LKEDQ 145 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~-----------------~~~~~-~g--------~~~~~ 145 (489)
+..|...|+||+|++.+.++++++.|++-+||...-.-..+. +-.+. .| .-.+.
T Consensus 186 Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl 265 (481)
T KOG0300|consen 186 YTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPL 265 (481)
T ss_pred ecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeee
Confidence 566777799999999999999999999999997321100000 00000 00 01123
Q ss_pred cccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCc
Q 037120 146 SKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTS 225 (489)
Q Consensus 146 ~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 225 (489)
..+++|... |.+..|-..++ .+++++.| .+..+||+..+ . .+..+.||....+.++-+|...
T Consensus 266 ~~ltgH~~v---V~a~dWL~gg~-Q~vTaSWD-RTAnlwDVEtg-----e-------~v~~LtGHd~ELtHcstHptQr- 327 (481)
T KOG0300|consen 266 MRLTGHRAV---VSACDWLAGGQ-QMVTASWD-RTANLWDVETG-----E-------VVNILTGHDSELTHCSTHPTQR- 327 (481)
T ss_pred eeeeccccc---eEehhhhcCcc-eeeeeecc-ccceeeeeccC-----c-------eeccccCcchhccccccCCcce-
Confidence 345667776 88899998876 78888888 99999999432 1 2344589999999999999998
Q ss_pred EEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-cceeecCCccCCCC
Q 037120 226 RLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLP 304 (489)
Q Consensus 226 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~ 304 (489)
++++++.|.+.++||++. ..+.+..+.+|...|+++.|+-+.+ +++|+.|.+|++||+++.+. +.++.. .. +
T Consensus 328 LVvTsSrDtTFRLWDFRe-aI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRt-dS----~ 400 (481)
T KOG0300|consen 328 LVVTSSRDTTFRLWDFRE-AIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRT-DS----P 400 (481)
T ss_pred EEEEeccCceeEeccchh-hcceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeec-CC----c
Confidence 999999999999999994 3445667889999999999987655 68999999999999999765 666654 22 3
Q ss_pred eeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCce-EE-EEeeccceeeecCCCCCCcCCCCcccc
Q 037120 305 LTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWS-GV-LDVYNSRVSHVHCPPPAWLSDSNNSAD 382 (489)
Q Consensus 305 v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (489)
++.++.+..+..|+- --+.+.+-.+.+.+.-- ++ ..-..||..-+.|. +|.....
T Consensus 401 ~NRvavs~g~~iIAi-----------------PhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~--AW~eehp---- 457 (481)
T KOG0300|consen 401 ANRVAVSKGHPIIAI-----------------PHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCC--AWLEEHP---- 457 (481)
T ss_pred cceeEeecCCceEEe-----------------ccCCceEEEEecCCCccccCCcccccccceeeeee--eccccCc----
Confidence 777776655544431 11222222232222210 00 01123444444454 5655521
Q ss_pred ccCCCcceeecCCcEEEEeecCCCcEEEEeccCC
Q 037120 383 QLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPG 416 (489)
Q Consensus 383 ~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~ 416 (489)
-.-+.+++-|..+.=|.+...
T Consensus 458 -------------~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 458 -------------ACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred -------------ccccccccccceeeeeEeccc
Confidence 223667889999999998764
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-19 Score=161.32 Aligned_cols=244 Identities=16% Similarity=0.253 Sum_probs=172.5
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+.+...+|+.++|++++.++++++.|+.+++|++...+... .+.||+.. |+++.|..... .+
T Consensus 215 LaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~--------------TLsGHtdk---Vt~ak~~~~~~-~v 276 (459)
T KOG0288|consen 215 LAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH--------------TLSGHTDK---VTAAKFKLSHS-RV 276 (459)
T ss_pred hhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhh--------------hhcccccc---eeeehhhcccc-ce
Confidence 34445569999999999999999999999999999844443 23678887 99999988764 48
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++|+.| .+|++||+...- . .+.+ -....+++|... .. .+++|-.|+.|++||+++.. +...
T Consensus 277 Vsgs~D-RtiK~WDl~k~~-----C---~kt~-----l~~S~cnDI~~~--~~-~~~SgH~DkkvRfwD~Rs~~--~~~s 337 (459)
T KOG0288|consen 277 VSGSAD-RTIKLWDLQKAY-----C---SKTV-----LPGSQCNDIVCS--IS-DVISGHFDKKVRFWDIRSAD--KTRS 337 (459)
T ss_pred eecccc-chhhhhhhhhhh-----e---eccc-----cccccccceEec--ce-eeeecccccceEEEeccCCc--eeeE
Confidence 899998 999999994321 1 1111 011355666655 33 68888899999999999877 4444
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
...+ +.|+++..++++..+++.+.|.++.+.|+++......+.... -. .....
T Consensus 338 v~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g----------------~k----------~asDw 390 (459)
T KOG0288|consen 338 VPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEG----------------FK----------CASDW 390 (459)
T ss_pred eecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccc----------------cc----------ccccc
Confidence 4444 589999999999999999999999999999876555544321 11 11224
Q ss_pred eEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEE
Q 037120 332 HSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLL 411 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vw 411 (489)
+.+.|||++.|+++++.++. ..+|++.++....+.+.+.+-. .+...+|.|. |.++++++.++.+.+|
T Consensus 391 trvvfSpd~~YvaAGS~dgs-v~iW~v~tgKlE~~l~~s~s~~----------aI~s~~W~~s-G~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 391 TRVVFSPDGSYVAAGSADGS-VYIWSVFTGKLEKVLSLSTSNA----------AITSLSWNPS-GSGLLSADKQKAVTLW 458 (459)
T ss_pred ceeEECCCCceeeeccCCCc-EEEEEccCceEEEEeccCCCCc----------ceEEEEEcCC-CchhhcccCCcceEec
Confidence 66778888888888877765 2355566666555444321110 1233566665 5667777889999998
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-19 Score=159.34 Aligned_cols=170 Identities=18% Similarity=0.228 Sum_probs=132.8
Q ss_pred cccCCCceeEEEECCCC-cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDCKG-IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g-~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..|...=.+|+|||-- -.|++|..-+.|++|...++.-. .....+.+|+.. |-.++|+|....+
T Consensus 207 ~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~-----------vd~~Pf~gH~~S---VEDLqWSptE~~v 272 (440)
T KOG0302|consen 207 FNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWK-----------VDQRPFTGHTKS---VEDLQWSPTEDGV 272 (440)
T ss_pred ecccCccceeeecccccccccccCccccceEeeeeccCcee-----------ecCccccccccc---hhhhccCCccCce
Confidence 44455557899999942 24788888889999988773221 122345678888 6669999999999
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-ce
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-SL 249 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~ 249 (489)
|++++-| |+|+|||++....++ .+. ...|...|+-|.|+..-+ +|++|+.||+++|||+|+-+.. .+
T Consensus 273 faScS~D-gsIrIWDiRs~~~~~--~~~--------~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~~pV 340 (440)
T KOG0302|consen 273 FASCSCD-GSIRIWDIRSGPKKA--AVS--------TKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSGQPV 340 (440)
T ss_pred EEeeecC-ceEEEEEecCCCccc--eeE--------eeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCCCcc
Confidence 9999999 999999998764432 111 156888999999999988 9999999999999999975432 45
Q ss_pred eeccCCCCceeEEEEeecCCE-EEEEeCCCeEEEEEcCC
Q 037120 250 ELSTGSHGTLNSIQLHAENQI-IFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~p~~~~-l~~~~~dg~i~lwd~~~ 287 (489)
..+..|..+|+|+.|+|.... ++++|.|.+|.|||+..
T Consensus 341 A~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 341 ATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV 379 (440)
T ss_pred eeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence 578899999999999997654 55556699999999975
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=149.33 Aligned_cols=225 Identities=12% Similarity=0.126 Sum_probs=160.5
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCC--ceeeeece-eeeeecCCcccCeeEEEEecCCCcEEEEEeCCC
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEP--VEVLKTRR-SVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG 234 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~--~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg 234 (489)
|.++...+.....+++|+.| |.|.+||+....... ..+.+..- .-...-.+|.-.|.++.|.|-+..+|.+++.|.
T Consensus 46 vNsL~id~tegrymlSGgad-gsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDh 124 (397)
T KOG4283|consen 46 VNSLQIDLTEGRYMLSGGAD-GSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDH 124 (397)
T ss_pred cceeeeccccceEEeecCCC-ccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccc
Confidence 88899988877788888888 999999996433111 01111000 001112679999999999998887999999999
Q ss_pred cEEEEECCCCCcCceeeccCCCCceeEEEEeecC--C-EEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeC
Q 037120 235 VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAEN--Q-IIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLA 311 (489)
Q Consensus 235 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~--~-~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~ 311 (489)
++++||.++.+.... + .-++.|.+-+++|-. . ++++|..|-.|++-|+.+|...+++.+|.+. |.++.|+
T Consensus 125 tlKVWDtnTlQ~a~~--F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~----vlaV~Ws 197 (397)
T KOG4283|consen 125 TLKVWDTNTLQEAVD--F-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG----VLAVEWS 197 (397)
T ss_pred eEEEeecccceeeEE--e-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc----eEEEEec
Confidence 999999998653322 2 225778888888843 3 4445555889999999999999999999877 7777666
Q ss_pred CCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCccee
Q 037120 312 SMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSW 391 (489)
Q Consensus 312 ~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (489)
|..
T Consensus 198 p~~----------------------------------------------------------------------------- 200 (397)
T KOG4283|consen 198 PSS----------------------------------------------------------------------------- 200 (397)
T ss_pred cCc-----------------------------------------------------------------------------
Confidence 531
Q ss_pred ecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCC-cccCCCceEEEEeeCCCCeEEeccCcc
Q 037120 392 LSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENR-FVPLSEGVTACVTHPLNNTIVAGTKNS 470 (489)
Q Consensus 392 ~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~va~~p~~~~i~sgs~dg 470 (489)
...|++||.||.|++||+... +.|..-.++.... .++... -..|.+.|+++||..++.++++++.|.
T Consensus 201 ----e~vLatgsaDg~irlWDiRra--sgcf~~lD~hn~k------~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~ 268 (397)
T KOG4283|consen 201 ----EWVLATGSADGAIRLWDIRRA--SGCFRVLDQHNTK------RPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD 268 (397)
T ss_pred ----eeEEEecCCCceEEEEEeecc--cceeEEeecccCc------cCccccccccccceeeeeeecccchhhhhccCcc
Confidence 456788999999999999854 3333222211100 000000 127999999999999999999999999
Q ss_pred eeEEEeccc
Q 037120 471 SLLVVSQKQ 479 (489)
Q Consensus 471 ~i~v~~~~~ 479 (489)
.+++|--++
T Consensus 269 r~r~wn~~~ 277 (397)
T KOG4283|consen 269 RIRVWNMES 277 (397)
T ss_pred ceEEeeccc
Confidence 999996544
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-18 Score=148.81 Aligned_cols=268 Identities=15% Similarity=0.134 Sum_probs=174.7
Q ss_pred cccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEE
Q 037120 148 HLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRL 227 (489)
Q Consensus 148 ~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 227 (489)
+.+|..+ |++++|+.+|. .|++++.| ++|+||+++....+..+.+...-. .+ --+.+.|.||....+
T Consensus 82 LKgH~~~---vt~~~FsSdGK-~lat~~~D-r~Ir~w~~~DF~~~eHr~~R~nve-----~d---hpT~V~FapDc~s~v 148 (420)
T KOG2096|consen 82 LKGHKKE---VTDVAFSSDGK-KLATISGD-RSIRLWDVRDFENKEHRCIRQNVE-----YD---HPTRVVFAPDCKSVV 148 (420)
T ss_pred hhccCCc---eeeeEEcCCCc-eeEEEeCC-ceEEEEecchhhhhhhhHhhcccc-----CC---CceEEEECCCcceEE
Confidence 4667777 99999999997 67777777 999999997654333222222111 22 346789999999888
Q ss_pred EEEeCCCcEEEEECCCCCc---C--c-----eeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecC
Q 037120 228 IASDTHGVVNIWDRRVGVL---P--S-----LELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNH 297 (489)
Q Consensus 228 ~s~s~dg~i~iwd~~~~~~---~--~-----~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~ 297 (489)
+++-...++++|-+...+. + . .....-|...+..+-..-++.++++++.|..|.|||++ |+.+..+...
T Consensus 149 v~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtn 227 (420)
T KOG2096|consen 149 VSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTN 227 (420)
T ss_pred EEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccc
Confidence 8888888999997653211 1 1 11223566677778888889999999999999999999 8888888766
Q ss_pred CccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEE--EeeccceeeecCCCCCCcC
Q 037120 298 KEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVL--DVYNSRVSHVHCPPPAWLS 375 (489)
Q Consensus 298 ~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~--~~~~~~~~~~~~~~~~~~~ 375 (489)
+.. -...+.+|+|++++.... ...-.|+.+.|..+|. ...+. -...||...++.. +|++
T Consensus 228 q~~----n~~aavSP~GRFia~~gF---TpDVkVwE~~f~kdG~----------fqev~rvf~LkGH~saV~~~--aFsn 288 (420)
T KOG2096|consen 228 QSS----NYDAAVSPDGRFIAVSGF---TPDVKVWEPIFTKDGT----------FQEVKRVFSLKGHQSAVLAA--AFSN 288 (420)
T ss_pred ccc----ccceeeCCCCcEEEEecC---CCCceEEEEEeccCcc----------hhhhhhhheeccchhheeee--eeCC
Confidence 655 677888999988864221 1122344444444443 22122 2335777666554 6666
Q ss_pred CCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEE
Q 037120 376 DSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACV 455 (489)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va 455 (489)
+ +..+++.|.||+++|||..-.-.. + +....+.. ...+....-.++ .-++
T Consensus 289 ~-------------------S~r~vtvSkDG~wriwdtdVrY~~----~--qDpk~Lk~----g~~pl~aag~~p-~RL~ 338 (420)
T KOG2096|consen 289 S-------------------STRAVTVSKDGKWRIWDTDVRYEA----G--QDPKILKE----GSAPLHAAGSEP-VRLE 338 (420)
T ss_pred C-------------------cceeEEEecCCcEEEeeccceEec----C--CCchHhhc----CCcchhhcCCCc-eEEE
Confidence 6 778999999999999998654000 0 11111110 000000112233 4799
Q ss_pred eeCCCCeEEeccCcceeEEEeccc
Q 037120 456 THPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 456 ~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
.+|.+..+|.+.. .+|.+|..+.
T Consensus 339 lsP~g~~lA~s~g-s~l~~~~se~ 361 (420)
T KOG2096|consen 339 LSPSGDSLAVSFG-SDLKVFASED 361 (420)
T ss_pred eCCCCcEEEeecC-CceEEEEccc
Confidence 9999998777654 7788877665
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=158.87 Aligned_cols=185 Identities=15% Similarity=0.144 Sum_probs=138.9
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
+-|+++...|||+.|++|+.-.++.|||+......-+ . .. +.....+.+++.+||.+..+++++
T Consensus 466 nyiRSckL~pdgrtLivGGeastlsiWDLAapTprik----------a----el-tssapaCyALa~spDakvcFsccs- 529 (705)
T KOG0639|consen 466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIK----------A----EL-TSSAPACYALAISPDAKVCFSCCS- 529 (705)
T ss_pred cceeeeEecCCCceEEeccccceeeeeeccCCCcchh----------h----hc-CCcchhhhhhhcCCccceeeeecc-
Confidence 4499999999999999999999999999987222111 0 00 111112677999999875555555
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~ 256 (489)
| |.|.|||+. .+..+.+|.||++.+.+|..+++|. .|.||+-|++|+.||+|++.+..-. ...
T Consensus 530 d-GnI~vwDLh------------nq~~VrqfqGhtDGascIdis~dGt-klWTGGlDntvRcWDlregrqlqqh---dF~ 592 (705)
T KOG0639|consen 530 D-GNIAVWDLH------------NQTLVRQFQGHTDGASCIDISKDGT-KLWTGGLDNTVRCWDLREGRQLQQH---DFS 592 (705)
T ss_pred C-CcEEEEEcc------------cceeeecccCCCCCceeEEecCCCc-eeecCCCccceeehhhhhhhhhhhh---hhh
Confidence 4 999999993 2223445699999999999999999 9999999999999999998644221 235
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceee
Q 037120 257 GTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
+.|.++-.+|++..+++|-..+.+-|......+ .+.+..|+.. |-+|.|.+-|+.+++
T Consensus 593 SQIfSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheSc----VLSlKFa~cGkwfvS 650 (705)
T KOG0639|consen 593 SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESC----VLSLKFAYCGKWFVS 650 (705)
T ss_pred hhheecccCCCccceeeecccCcEEEEecCCcc-ceeecccccE----EEEEEecccCceeee
Confidence 789999999999999999999988888766432 4555556655 777777776666654
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-18 Score=148.82 Aligned_cols=173 Identities=13% Similarity=0.168 Sum_probs=120.8
Q ss_pred cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC-CCCEEEEEecCCCEEEEEEec
Q 037120 109 IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA-NQDEVACASTRSNVVSIYDIG 187 (489)
Q Consensus 109 ~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~-~~~~l~s~~~d~g~i~vwd~~ 187 (489)
..+|++-..|.|++||..++.... ++.++... +..++|... +.+.+.+++.| |+|++||++
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~--------------~fk~~~~~---~N~vrf~~~ds~h~v~s~ssD-G~Vr~wD~R 102 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLE--------------EFKGPPAT---TNGVRFISCDSPHGVISCSSD-GTVRLWDIR 102 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhh--------------eecCCCCc---ccceEEecCCCCCeeEEeccC-CeEEEEEee
Confidence 578999999999999999844433 12444444 445888653 56678888888 999999997
Q ss_pred cCCCCCceeeeeceeeeeecCCcc-cCeeEEEEecCCCcEEEEEe----CCCcEEEEECCCCCcCceeeccCCCCceeEE
Q 037120 188 YISDEPVEVLKTRRSVTVVGSDVQ-KGLSDLAFSAVNTSRLIASD----THGVVNIWDRRVGVLPSLELSTGSHGTLNSI 262 (489)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~s----~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~ 262 (489)
.....+... + .+|. .+..+++..-.+. ++++|. .|-.|.+||+|..+++.-.....|.+.|+++
T Consensus 103 s~~e~a~~~------~----~~~~~~~f~~ld~nck~~-ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~l 171 (376)
T KOG1188|consen 103 SQAESARIS------W----TQQSGTPFICLDLNCKKN-IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQL 171 (376)
T ss_pred cchhhhhee------c----cCCCCCcceEeeccCcCC-eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeE
Confidence 654432111 1 3333 4566666554555 677665 5678999999997765444566999999999
Q ss_pred EEeecCC-EEEEEeCCCeEEEEEcCCCcc---cceeecCCccCCCCeeEEEeCCCC
Q 037120 263 QLHAENQ-IIFAAGKHGSIYLWDLRGGRT---SAPFHNHKEVCHLPLTSLKLASML 314 (489)
Q Consensus 263 ~~~p~~~-~l~~~~~dg~i~lwd~~~~~~---~~~~~~~~~~~~~~v~~l~~~~~~ 314 (489)
.|+|..+ .|++|+.||.|.|||+..... +...-.+... |..+.|..++
T Consensus 172 rFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sS----I~~igw~~~~ 223 (376)
T KOG1188|consen 172 RFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSS----IHLIGWLSKK 223 (376)
T ss_pred EecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccce----eeeeeeecCC
Confidence 9999765 566666799999999987543 2222233444 7888888776
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.5e-17 Score=155.36 Aligned_cols=334 Identities=11% Similarity=0.123 Sum_probs=218.9
Q ss_pred cCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 94 FGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
.|+.=|.++.|+|.+..|++++.|.++.||.-.+..- .......+-.-.+...+....-|+|++. .+++
T Consensus 265 GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tG----------iWv~~vRlGe~gg~a~GF~g~lw~~n~~-~ii~ 333 (764)
T KOG1063|consen 265 GHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTG----------IWVDVVRLGEVGGSAGGFWGGLWSPNSN-VIIA 333 (764)
T ss_pred CcccceEEEEEccchhhheecccCcceEEEecCCccc----------eEEEEEEeecccccccceeeEEEcCCCC-EEEE
Confidence 4666699999999999999999999999998776211 1111111100011222366699999985 6666
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC--ceee
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP--SLEL 251 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~ 251 (489)
-+.. |..++|.. +........... .||.+.|++++|.|.|. +|++.|.|.+-|++---..+.. .+..
T Consensus 334 ~g~~-Gg~hlWkt-----~d~~~w~~~~~i----SGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~wg~q~~wHEiaR 402 (764)
T KOG1063|consen 334 HGRT-GGFHLWKT-----KDKTFWTQEPVI----SGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIAR 402 (764)
T ss_pred eccc-CcEEEEec-----cCccceeecccc----ccccccceeeeecCCCC-EEEEeccccceeeecccccccceeeecc
Confidence 6666 99999983 111112222222 89999999999999999 9999999999999854421111 2233
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-------------------------------------------
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGG------------------------------------------- 288 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~------------------------------------------- 288 (489)
..-|.-.++|++|-+....+++|.....+|+|+....
T Consensus 403 PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G 482 (764)
T KOG1063|consen 403 PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTG 482 (764)
T ss_pred cccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccc
Confidence 4467788999999886566677777889999974210
Q ss_pred cc---------------------------------cceeecCCccCCCCeeEEEeCCCCcceeec-c-------------
Q 037120 289 RT---------------------------------SAPFHNHKEVCHLPLTSLKLASMLEKIGTL-K------------- 321 (489)
Q Consensus 289 ~~---------------------------------~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~-~------------- 321 (489)
.. ++.+.+|.-. |.+++.+|++..+++. +
T Consensus 483 ~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyE----v~~l~~s~~gnliASaCKS~~~ehAvI~lw~ 558 (764)
T KOG1063|consen 483 GEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYE----VYALAISPTGNLIASACKSSLKEHAVIRLWN 558 (764)
T ss_pred cccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCcee----EEEEEecCCCCEEeehhhhCCccceEEEEEe
Confidence 00 0113344444 8999999999998552 1
Q ss_pred -------ccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecC
Q 037120 322 -------AQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLST 394 (489)
Q Consensus 322 -------~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (489)
.....|+-.|+.+.|+||++++++.+.|..|+ ++........... |.. ...+.+-+..-+|+|+
T Consensus 559 t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~s-l~~~~~~~~~e~~-----fa~---~k~HtRIIWdcsW~pd 629 (764)
T KOG1063|consen 559 TANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVS-LYEVQEDIKDEFR-----FAC---LKAHTRIIWDCSWSPD 629 (764)
T ss_pred ccchhhhheecccceEEEEEEECCCCcEEEEeecCceEE-eeeeecccchhhh-----hcc---ccccceEEEEcccCcc
Confidence 12334566799999999999999999998875 2222111111000 000 0011111122344555
Q ss_pred CcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCC-----eEEeccCc
Q 037120 395 NSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN-----TIVAGTKN 469 (489)
Q Consensus 395 ~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~-----~i~sgs~d 469 (489)
+.+++|+|.|..|+||...... ++.+..+ ..+.+...|++++++|... .++.|-+.
T Consensus 630 -e~~FaTaSRDK~VkVW~~~~~~--------d~~i~~~----------a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~ 690 (764)
T KOG1063|consen 630 -EKYFATASRDKKVKVWEEPDLR--------DKYISRF----------ACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEK 690 (764)
T ss_pred -cceeEEecCCceEEEEeccCch--------hhhhhhh----------chhccCCceeeEEeeccccccccceEEEEecc
Confidence 6779999999999999987661 0111111 1126899999999998542 67899999
Q ss_pred ceeEEEeccccc
Q 037120 470 SSLLVVSQKQQC 481 (489)
Q Consensus 470 g~i~v~~~~~~~ 481 (489)
|.|.||..+++.
T Consensus 691 GeI~l~~~~~~~ 702 (764)
T KOG1063|consen 691 GEIVLWRRKREH 702 (764)
T ss_pred cEEEEEeccccc
Confidence 999999987554
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=165.17 Aligned_cols=233 Identities=13% Similarity=0.172 Sum_probs=174.1
Q ss_pred ccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeE-EEEecCCCcEE
Q 037120 149 LLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSD-LAFSAVNTSRL 227 (489)
Q Consensus 149 ~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l 227 (489)
.+|... |..++..+.. .+++++.| |++++|+-... .... .+.+.+|.+-|.. +++.+..+-.+
T Consensus 11 ~gH~~D---Vr~v~~~~~~--~i~s~sRd-~t~~vw~~~~~------~~l~----~~~~~~~~g~i~~~i~y~e~~~~~l 74 (745)
T KOG0301|consen 11 EGHKSD---VRAVAVTDGV--CIISGSRD-GTVKVWAKKGK------QYLE----THAFEGPKGFIANSICYAESDKGRL 74 (745)
T ss_pred ccCccc---hheeEecCCe--EEeecCCC-CceeeeeccCc------cccc----ceecccCcceeeccceeccccCcce
Confidence 567776 7778877653 78888888 99999997322 1111 1223667777777 88876444369
Q ss_pred EEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeE
Q 037120 228 IASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTS 307 (489)
Q Consensus 228 ~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~ 307 (489)
++|+.|.+|.+|...+.. .+.++.+|+..|.|+....++. +++|+.|.++++|-. +++...+++|+.+ |.+
T Consensus 75 ~~g~~D~~i~v~~~~~~~--P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~as----VWA 145 (745)
T KOG0301|consen 75 VVGGMDTTIIVFKLSQAE--PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTAS----VWA 145 (745)
T ss_pred EeecccceEEEEecCCCC--chhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchh----eee
Confidence 999999999999988766 6778889999999999888887 899999999999965 4667789999977 888
Q ss_pred EEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCC---ce--EEEEeeccceeeecCCCCCCcCCCCcccc
Q 037120 308 LKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDG---WS--GVLDVYNSRVSHVHCPPPAWLSDSNNSAD 382 (489)
Q Consensus 308 l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~---w~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (489)
++.-|++.++ +++.|.. |. .+++++.||..-+
T Consensus 146 v~~l~e~~~v---------------------------TgsaDKtIklWk~~~~l~tf~gHtD~V---------------- 182 (745)
T KOG0301|consen 146 VASLPENTYV---------------------------TGSADKTIKLWKGGTLLKTFSGHTDCV---------------- 182 (745)
T ss_pred eeecCCCcEE---------------------------eccCcceeeeccCCchhhhhccchhhe----------------
Confidence 8877766433 2222222 32 4555555554332
Q ss_pred ccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCe
Q 037120 383 QLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNT 462 (489)
Q Consensus 383 ~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~ 462 (489)
|.++.++++ -+++++.||.|++|++ ++ +.+.+.. ||..-|.+++..+++..
T Consensus 183 ----RgL~vl~~~--~flScsNDg~Ir~w~~-~g----------e~l~~~~------------ghtn~vYsis~~~~~~~ 233 (745)
T KOG0301|consen 183 ----RGLAVLDDS--HFLSCSNDGSIRLWDL-DG----------EVLLEMH------------GHTNFVYSISMALSDGL 233 (745)
T ss_pred ----eeeEEecCC--CeEeecCCceEEEEec-cC----------ceeeeee------------ccceEEEEEEecCCCCe
Confidence 333333332 4678899999999999 56 6777777 99999999998888889
Q ss_pred EEeccCcceeEEEecc
Q 037120 463 IVAGTKNSSLLVVSQK 478 (489)
Q Consensus 463 i~sgs~dg~i~v~~~~ 478 (489)
|+|+|+|+++++|..+
T Consensus 234 Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 234 IVSTGEDRTLRIWKKD 249 (745)
T ss_pred EEEecCCceEEEeecC
Confidence 9999999999999887
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-16 Score=151.47 Aligned_cols=328 Identities=13% Similarity=0.137 Sum_probs=201.9
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..|.+++.+|.+..++.|+.||.+..++.......... .+ .-.++. |.+++|+|++. .+++|+.
T Consensus 111 g~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r------~l------~rq~sR---vLslsw~~~~~-~i~~Gs~ 174 (691)
T KOG2048|consen 111 GAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKR------SL------MRQKSR---VLSLSWNPTGT-KIAGGSI 174 (691)
T ss_pred cceeEEEeCCccceEEeecCCceEEEEecCCceEEEEe------ec------ccccce---EEEEEecCCcc-EEEeccc
Confidence 45999999999999999999998888887774443321 11 112233 99999999985 6888888
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecC-CcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGS-DVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGS 255 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h 255 (489)
| |.|++||+..+. .+.....-...+. +-..-|+++.|-.++ .|++|...|+|.+||...+. .++....|
T Consensus 175 D-g~Iriwd~~~~~-----t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~--tI~sgDS~G~V~FWd~~~gT--LiqS~~~h 244 (691)
T KOG2048|consen 175 D-GVIRIWDVKSGQ-----TLHIITMQLDRLSKREPTIVWSVLFLRDS--TIASGDSAGTVTFWDSIFGT--LIQSHSCH 244 (691)
T ss_pred C-ceEEEEEcCCCc-----eEEEeeecccccccCCceEEEEEEEeecC--cEEEecCCceEEEEcccCcc--hhhhhhhh
Confidence 8 999999995432 2111110011111 134468899988766 59999999999999999987 67777899
Q ss_pred CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc----cceeecCCccCCCCeeEEEeCCCC-----cce---------
Q 037120 256 HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT----SAPFHNHKEVCHLPLTSLKLASML-----EKI--------- 317 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~----~~~~~~~~~~~~~~v~~l~~~~~~-----~~i--------- 317 (489)
...|.|++.+++++.++++|-|+.|..|-..+.+. ......|... |.+++..++- .-.
T Consensus 245 ~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hd----vrs~av~~~~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 245 DADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHD----VRSMAVIENALISGGRDFTLAICSSRE 320 (691)
T ss_pred hcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCccc----ceeeeeecceEEecceeeEEEEccccc
Confidence 99999999999999999999999999988776543 1122233333 6666655441 000
Q ss_pred ----------------------------------------eecccc-----------ceeeccceeEEEeCCCCCeEEEE
Q 037120 318 ----------------------------------------GTLKAQ-----------SKIVSQEIHSIDLDPSCSYQLAF 346 (489)
Q Consensus 318 ----------------------------------------~~~~~~-----------~~~~~~~i~~~~~~p~~~~~~~~ 346 (489)
++...+ ......-|.+.+.+|+|..++..
T Consensus 321 ~~~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~s 400 (691)
T KOG2048|consen 321 FKNMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAIS 400 (691)
T ss_pred cCchhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEe
Confidence 000000 00002234555566666655554
Q ss_pred EecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccC
Q 037120 347 HLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYN 426 (489)
Q Consensus 347 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~ 426 (489)
+.... .+..+.-.+...+... .......+......|.-++..+++..-.+..+.+.++.+...
T Consensus 401 t~~~~--~iy~L~~~~~vk~~~v-------~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~-------- 463 (691)
T KOG2048|consen 401 TVSRT--KIYRLQPDPNVKVINV-------DDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSF-------- 463 (691)
T ss_pred eccce--EEEEeccCcceeEEEe-------ccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcch--------
Confidence 43221 0111000000000000 000001112234555556666666544666777777765510
Q ss_pred cccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccccc
Q 037120 427 EDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQC 481 (489)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~ 481 (489)
+.+..+. + .+-.+.|..++.+|+|++||+.+..|.|.+|.-|...
T Consensus 464 kel~~~~-----~-----~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~ 508 (691)
T KOG2048|consen 464 KELKSIQ-----S-----QAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLE 508 (691)
T ss_pred hhhhccc-----c-----ccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccce
Confidence 1111111 0 1456789999999999999999999999999877643
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.2e-18 Score=154.63 Aligned_cols=196 Identities=12% Similarity=0.198 Sum_probs=149.8
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC-CCCE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA-NQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~-~~~~ 170 (489)
+..|-+.|+|+.|+-||.+|++|+.||.|.+|.+......... +...+...|..|+-. |+++...+. ....
T Consensus 119 ~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~-----~~~~p~~~f~~Htls---ITDl~ig~Gg~~~r 190 (476)
T KOG0646|consen 119 LSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADND-----HSVKPLHIFSDHTLS---ITDLQIGSGGTNAR 190 (476)
T ss_pred HHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccC-----CCccceeeeccCcce---eEEEEecCCCccce
Confidence 4567778999999999999999999999999998763222211 123444445556666 888988765 2347
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCC-----
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGV----- 245 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~----- 245 (489)
+++++.| .++++||+..+ ..+.... -...+.+++..|.+. .++.|+.+|.|.+.++....
T Consensus 191 l~TaS~D-~t~k~wdlS~g-----~LLlti~--------fp~si~av~lDpae~-~~yiGt~~G~I~~~~~~~~~~~~~~ 255 (476)
T KOG0646|consen 191 LYTASED-RTIKLWDLSLG-----VLLLTIT--------FPSSIKAVALDPAER-VVYIGTEEGKIFQNLLFKLSGQSAG 255 (476)
T ss_pred EEEecCC-ceEEEEEeccc-----eeeEEEe--------cCCcceeEEEccccc-EEEecCCcceEEeeehhcCCccccc
Confidence 8899988 99999999432 3333222 224899999999998 99999999999988775432
Q ss_pred ---------cCceeeccCCCC--ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCC
Q 037120 246 ---------LPSLELSTGSHG--TLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASML 314 (489)
Q Consensus 246 ---------~~~~~~~~~h~~--~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 314 (489)
...++.+.+|.+ .|+|++++-||.+|++|+.||.|+|||+.+.++++++....++ |+.+.+.|--
T Consensus 256 v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgp----VtnL~i~~~~ 331 (476)
T KOG0646|consen 256 VNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGP----VTNLQINPLE 331 (476)
T ss_pred ccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccc----cceeEeeccc
Confidence 013345568888 9999999999999999999999999999999998888754544 9999886643
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-18 Score=160.49 Aligned_cols=262 Identities=12% Similarity=0.140 Sum_probs=172.2
Q ss_pred cCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEE
Q 037120 150 LHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIA 229 (489)
Q Consensus 150 ~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 229 (489)
-|... |++++|.|... .|++++.| |+|++|++..........+.+.. ++.+|.++|.+++..+.+. .+++
T Consensus 292 s~~d~---ir~l~~~~sep-~lit~sed-~~lk~WnLqk~~~s~~~~~epi~----tfraH~gPVl~v~v~~n~~-~~ys 361 (577)
T KOG0642|consen 292 SHDDC---IRALAFHPSEP-VLITASED-GTLKLWNLQKAKKSAEKDVEPIL----TFRAHEGPVLCVVVPSNGE-HCYS 361 (577)
T ss_pred cchhh---hhhhhcCCCCC-eEEEeccc-cchhhhhhcccCCccccceeeeE----EEecccCceEEEEecCCce-EEEe
Confidence 35555 88899999865 88899998 99999999443222223344444 4599999999999999999 9999
Q ss_pred EeCCCcEEEEECCCCC------cC--ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccC
Q 037120 230 SDTHGVVNIWDRRVGV------LP--SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVC 301 (489)
Q Consensus 230 ~s~dg~i~iwd~~~~~------~~--~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~ 301 (489)
|+.||+|+.|++-... .+ ....+.+|.+.|..+++++....|++++.||++++|+...... .+|....+.
T Consensus 362 gg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~- 439 (577)
T KOG0642|consen 362 GGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEH- 439 (577)
T ss_pred eccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCcccc-
Confidence 9999999999654221 11 2334569999999999999999999999999999999876554 333322211
Q ss_pred CCCeeEEEeCCCCcce--eeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCc
Q 037120 302 HLPLTSLKLASMLEKI--GTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNN 379 (489)
Q Consensus 302 ~~~v~~l~~~~~~~~i--~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (489)
..-.++.+-...-.+ +++. .+...+.+.-.+....+... .-.. .
T Consensus 440 -g~Plsvd~~ss~~a~~~~s~~----------------------------~~~~~~~~~ev~s~~~~~~s--~~~~---~ 485 (577)
T KOG0642|consen 440 -GYPLSVDRTSSRPAHSLASFR----------------------------FGYTSIDDMEVVSDLLIFES--SASP---G 485 (577)
T ss_pred -CCcceEeeccchhHhhhhhcc----------------------------cccccchhhhhhhheeeccc--cCCC---c
Confidence 112233322211000 0000 00000000000000000000 0000 0
Q ss_pred cccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCC
Q 037120 380 SADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPL 459 (489)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~ 459 (489)
....-....+.|.|.. .+.+++-+|+.|+++|..++ ..+.... .|...|+++++.|+
T Consensus 486 ~~~~~~in~vVs~~~~-~~~~~~hed~~Ir~~dn~~~----------~~l~s~~------------a~~~svtslai~~n 542 (577)
T KOG0642|consen 486 PRRYPQINKVVSHPTA-DITFTAHEDRSIRFFDNKTG----------KILHSMV------------AHKDSVTSLAIDPN 542 (577)
T ss_pred ccccCccceEEecCCC-CeeEecccCCceeccccccc----------ccchhee------------eccceecceeecCC
Confidence 0000112345666665 56777889999999999999 7887777 89999999999999
Q ss_pred CCeEEeccCcceeEEEecccc
Q 037120 460 NNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 460 ~~~i~sgs~dg~i~v~~~~~~ 480 (489)
+.++++|+.|+.+.+|..+-+
T Consensus 543 g~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 543 GPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred CceEEeecCCceeehhhccch
Confidence 999999999999999988543
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.6e-18 Score=147.77 Aligned_cols=263 Identities=11% Similarity=0.091 Sum_probs=178.9
Q ss_pred CCCceeEEEECCC----CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 95 GKPGISALDFDCK----GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 95 ~~~~V~~~~fs~~----g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+.+.-..++|+-+ ..+||+|+.-|.|+|.|+.++++.. .+.+|-.+ |..+.|.|+..++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~--------------~~~ghG~s---INeik~~p~~~ql 150 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK--------------NYRGHGGS---INEIKFHPDRPQL 150 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhcc--------------ceeccCcc---chhhhcCCCCCcE
Confidence 4455777777755 4689999999999999999855544 23566666 8889999999999
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC---
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP--- 247 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--- 247 (489)
+++++.| .+|++|++... ..+.-. ....||.+.|.++.|++++. .|++++.|.++++|++...+..
T Consensus 151 vls~SkD-~svRlwnI~~~-----~Cv~Vf----GG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~l 219 (385)
T KOG1034|consen 151 VLSASKD-HSVRLWNIQTD-----VCVAVF----GGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKL 219 (385)
T ss_pred EEEecCC-ceEEEEeccCC-----eEEEEe----cccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhh
Confidence 9999999 99999999432 222222 22389999999999999999 9999999999999999843110
Q ss_pred -----------------------ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC-CcccceeecCCccCCC
Q 037120 248 -----------------------SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRG-GRTSAPFHNHKEVCHL 303 (489)
Q Consensus 248 -----------------------~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~-~~~~~~~~~~~~~~~~ 303 (489)
......-|...|-|+.|- |+++++-+.++.|..|-.-. .+.+...+..+..
T Consensus 220 E~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~--- 294 (385)
T KOG1034|consen 220 ELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESA--- 294 (385)
T ss_pred hhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccc---
Confidence 001122577778888884 68889889999999998732 2223222211111
Q ss_pred CeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccc
Q 037120 304 PLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQ 383 (489)
Q Consensus 304 ~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (489)
.+- + ........+|+.+.| .+..-
T Consensus 295 -~Ti---------~----~~~~~~~c~iWfirf-----------------------------------~~d~~------- 318 (385)
T KOG1034|consen 295 -TTI---------L----GEFDYPMCDIWFIRF-----------------------------------AFDPW------- 318 (385)
T ss_pred -eee---------e----eEeccCccceEEEEE-----------------------------------eecHH-------
Confidence 000 0 111112222333322 11111
Q ss_pred cCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccc--hhhHhhhhcccCCcccCCCceEEEEeeCCCC
Q 037120 384 LHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIE--SLSERTKLKKENRFVPLSEGVTACVTHPLNN 461 (489)
Q Consensus 384 ~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~ 461 (489)
+..|+.|.+.|.|++||+... +... .+.- ---...|...+|+-++.
T Consensus 319 ------------~~~la~gnq~g~v~vwdL~~~----------ep~~~ttl~~----------s~~~~tVRQ~sfS~dgs 366 (385)
T KOG1034|consen 319 ------------QKMLALGNQSGKVYVWDLDNN----------EPPKCTTLTH----------SKSGSTVRQTSFSRDGS 366 (385)
T ss_pred ------------HHHHhhccCCCcEEEEECCCC----------CCccCceEEe----------ccccceeeeeeecccCc
Confidence 667888899999999999877 2211 1110 01135689999999999
Q ss_pred eEEeccCcceeEEEecc
Q 037120 462 TIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 462 ~i~sgs~dg~i~v~~~~ 478 (489)
.|+....||+|.=|..-
T Consensus 367 ~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 367 ILVLVCDDGTVWRWDRV 383 (385)
T ss_pred EEEEEeCCCcEEEEEee
Confidence 99999999999988753
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.2e-18 Score=154.17 Aligned_cols=211 Identities=18% Similarity=0.255 Sum_probs=156.3
Q ss_pred eeEEEeeCCCC-CEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcE
Q 037120 158 LDAVRWNLANQ-DEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVV 236 (489)
Q Consensus 158 V~~v~~~~~~~-~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i 236 (489)
|++++|+|... .++++|..- |+|-+||++... ...... .-+..|..+|.++.|+|.+.+.+++.|.||+|
T Consensus 189 it~l~fHPt~~~~lva~GdK~-G~VG~Wn~~~~~----~d~d~v----~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 189 ITSLAFHPTENRKLVAVGDKG-GQVGLWNFGTQE----KDKDGV----YLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred eEEEEecccCcceEEEEccCC-CcEEEEecCCCC----CccCce----EEeccCCccccceEecCCChhheeeeccCcee
Confidence 99999999977 677777776 999999995211 111111 22478999999999999999999999999999
Q ss_pred EEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCCCc
Q 037120 237 NIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASMLE 315 (489)
Q Consensus 237 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~ 315 (489)
++-|++......+-....-...+.++.|+.+...++.+..=|...+||+|+++. ...+..|... |++|
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kK----I~sv------- 328 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKK----ITSV------- 328 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcc----ccee-------
Confidence 999999864332222222345677899999999999998877999999999764 4444444433 4444
Q ss_pred ceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCC
Q 037120 316 KIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTN 395 (489)
Q Consensus 316 ~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (489)
+++|..
T Consensus 329 -------------------~~NP~~------------------------------------------------------- 334 (498)
T KOG4328|consen 329 -------------------ALNPVC------------------------------------------------------- 334 (498)
T ss_pred -------------------ecCCCC-------------------------------------------------------
Confidence 333321
Q ss_pred cEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEE
Q 037120 396 SIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVV 475 (489)
Q Consensus 396 ~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~ 475 (489)
..+++++|.|++++|||+..-...+. -.+.. +.|.-.|.++.|+|++..|++.+.|..|+||
T Consensus 335 p~~laT~s~D~T~kIWD~R~l~~K~s-----p~lst-------------~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~ 396 (498)
T KOG4328|consen 335 PWFLATASLDQTAKIWDLRQLRGKAS-----PFLST-------------LPHRRSVNSAYFSPSGGTLLTTCQDNEIRVF 396 (498)
T ss_pred chheeecccCcceeeeehhhhcCCCC-----cceec-------------ccccceeeeeEEcCCCCceEeeccCCceEEe
Confidence 56788999999999999986522110 01111 2699999999999999999999999999999
Q ss_pred ecccc
Q 037120 476 SQKQQ 480 (489)
Q Consensus 476 ~~~~~ 480 (489)
+.+.-
T Consensus 397 dss~~ 401 (498)
T KOG4328|consen 397 DSSCI 401 (498)
T ss_pred ecccc
Confidence 98633
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=8.4e-18 Score=155.40 Aligned_cols=174 Identities=14% Similarity=0.140 Sum_probs=127.6
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCC-CCE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLAN-QDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~-~~~ 170 (489)
+..|..-|+|++|+.+|.+||+|+.|-.+.|||.-..+.. |.--++|+.. |.++.|-|.. ..+
T Consensus 46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kll-------------hsI~TgHtaN---IFsvKFvP~tnnri 109 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLL-------------HSISTGHTAN---IFSVKFVPYTNNRI 109 (758)
T ss_pred hccccceecceeecCCCCEEeecCCcceEEeecchhccee-------------eeeecccccc---eeEEeeeccCCCeE
Confidence 4456666999999999999999999999999998763222 2233778888 9999999864 347
Q ss_pred EEEEecCCCEEEEEEeccCCCC--CceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-
Q 037120 171 VACASTRSNVVSIYDIGYISDE--PVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP- 247 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~- 247 (489)
+++|+.| ..|+++|+...+.. ......+...+ ..|+..|..|+-.|++++.|.++++||+|+-+|+|.....
T Consensus 110 v~sgAgD-k~i~lfdl~~~~~~~~d~~~~~~~~~~----~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~ 184 (758)
T KOG1310|consen 110 VLSGAGD-KLIKLFDLDSSKEGGMDHGMEETTRCW----SCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCN 184 (758)
T ss_pred EEeccCc-ceEEEEecccccccccccCccchhhhh----hhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCC
Confidence 7777777 99999999642221 11122223333 7799999999999999889999999999999999974211
Q ss_pred ----ceee---ccCCCCceeEEEEeecCC-EEEEEeCCCeEEEEEcC
Q 037120 248 ----SLEL---STGSHGTLNSIQLHAENQ-IIFAAGKHGSIYLWDLR 286 (489)
Q Consensus 248 ----~~~~---~~~h~~~v~~~~~~p~~~-~l~~~~~dg~i~lwd~~ 286 (489)
+... ....--...|+.++|..+ +|++|+.|-..++||.|
T Consensus 185 p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 185 PDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred ccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 1100 111123456999999766 46666779999999954
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-17 Score=149.88 Aligned_cols=270 Identities=15% Similarity=0.181 Sum_probs=185.0
Q ss_pred CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCcee
Q 037120 117 SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEV 196 (489)
Q Consensus 117 dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~ 196 (489)
...+++||+....... .+..|+.+ .++.++.|+..+...+++.+.| ..|++|.-.... .....
T Consensus 11 gd~~kl~D~s~~~~~~--------------~~~~~t~~-pg~~s~~w~~~n~lvvas~~gd-k~~~~~~K~g~~-~~Vp~ 73 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKS--------------EYVHQTAE-PGDFSFNWQRRNFLVVASMAGD-KVMRIKEKDGKT-PEVPR 73 (673)
T ss_pred CCceEEeecccccCcc--------------ccccCCCC-CcceeeeccccceEEEeecCCc-eeEEEecccCCC-Cccce
Confidence 3469999998733322 22223332 3388899998764344444555 889999763221 11111
Q ss_pred eeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC
Q 037120 197 LKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK 276 (489)
Q Consensus 197 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~ 276 (489)
+... .+. .-.|++...... ++++|+..+.|+|||++.. .+.+.+.+|...|+++.++-...+|++++.
T Consensus 74 ~~k~-------~gd--~~~Cv~~~s~S~-y~~sgG~~~~Vkiwdl~~k--l~hr~lkdh~stvt~v~YN~~DeyiAsvs~ 141 (673)
T KOG4378|consen 74 VRKL-------TGD--NAFCVACASQSL-YEISGGQSGCVKIWDLRAK--LIHRFLKDHQSTVTYVDYNNTDEYIASVSD 141 (673)
T ss_pred eecc-------ccc--hHHHHhhhhcce-eeeccCcCceeeehhhHHH--HHhhhccCCcceeEEEEecCCcceeEEecc
Confidence 1110 111 233444444445 8999999999999999953 377788899999999999999999999999
Q ss_pred CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEE
Q 037120 277 HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVL 356 (489)
Q Consensus 277 dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~ 356 (489)
.|.|.|-.+.++....+|....+. .|.-+.|+|..+.++....+++-..+|
T Consensus 142 gGdiiih~~~t~~~tt~f~~~sgq-----------------------------svRll~ys~skr~lL~~asd~G~Vtlw 192 (673)
T KOG4378|consen 142 GGDIIIHGTKTKQKTTTFTIDSGQ-----------------------------SVRLLRYSPSKRFLLSIASDKGAVTLW 192 (673)
T ss_pred CCcEEEEecccCccccceecCCCC-----------------------------eEEEeecccccceeeEeeccCCeEEEE
Confidence 999999999987765555432111 123456677777777777777755566
Q ss_pred EeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhh
Q 037120 357 DVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERT 436 (489)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 436 (489)
++....... .|... +..+-+.+||+|....++++.+.|..|++||.... .....+.
T Consensus 193 Dv~g~sp~~------~~~~~-----HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~----------~s~~~l~--- 248 (673)
T KOG4378|consen 193 DVQGMSPIF------HASEA-----HSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ----------ASTDRLT--- 248 (673)
T ss_pred eccCCCccc------chhhh-----ccCCcCcceecCCccceEEEecccceEEEeecccc----------cccceee---
Confidence 654322111 11111 11233678999999999999999999999999977 5554443
Q ss_pred hhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecc
Q 037120 437 KLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 437 ~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~ 478 (489)
...+..+|||.|+|-++++|+..|.|..|.-.
T Consensus 249 ----------y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 249 ----------YSHPLSTVAFSECGTYLCAGNSKGELIAYDMR 280 (673)
T ss_pred ----------ecCCcceeeecCCceEEEeecCCceEEEEecc
Confidence 55688999999999999999999999987543
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.1e-17 Score=157.67 Aligned_cols=251 Identities=12% Similarity=0.101 Sum_probs=178.7
Q ss_pred cCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEE
Q 037120 150 LHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIA 229 (489)
Q Consensus 150 ~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 229 (489)
+|+.. .+.|+|.|++. .|++++.| |.|++|+.......|..+ ..+...|.+++.. .. +|++
T Consensus 11 aht~G---~t~i~~d~~ge-fi~tcgsd-g~ir~~~~~sd~e~P~ti-----------~~~g~~v~~ia~~--s~-~f~~ 71 (933)
T KOG1274|consen 11 AHTGG---LTLICYDPDGE-FICTCGSD-GDIRKWKTNSDEEEPETI-----------DISGELVSSIACY--SN-HFLT 71 (933)
T ss_pred hccCc---eEEEEEcCCCC-EEEEecCC-CceEEeecCCcccCCchh-----------hccCceeEEEeec--cc-ceEE
Confidence 46655 77899999998 56666666 999999985443332111 1155577777653 44 8999
Q ss_pred EeCCCcEEEEECCCCCcC-ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEE
Q 037120 230 SDTHGVVNIWDRRVGVLP-SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSL 308 (489)
Q Consensus 230 ~s~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l 308 (489)
|+.+++|.+|.+..++.. .+. ...-++.+++|+-+|.++++||.|-.|++-++........+.+|... |.+|
T Consensus 72 ~s~~~tv~~y~fps~~~~~iL~---Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ap----Vl~l 144 (933)
T KOG1274|consen 72 GSEQNTVLRYKFPSGEEDTILA---RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAP----VLQL 144 (933)
T ss_pred eeccceEEEeeCCCCCccceee---eeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCc----eeee
Confidence 999999999999887644 333 33578999999999999999999999999999998888999999877 8888
Q ss_pred EeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecC-CCCCCcCCCCccccccCCC
Q 037120 309 KLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHC-PPPAWLSDSNNSADQLHLR 387 (489)
Q Consensus 309 ~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 387 (489)
.|+|.+.+++... .++. ..++++.++...+... +...... .....+.
T Consensus 145 ~~~p~~~fLAvss--------------------------~dG~-v~iw~~~~~~~~~tl~~v~k~n~~-----~~s~i~~ 192 (933)
T KOG1274|consen 145 SYDPKGNFLAVSS--------------------------CDGK-VQIWDLQDGILSKTLTGVDKDNEF-----ILSRICT 192 (933)
T ss_pred eEcCCCCEEEEEe--------------------------cCce-EEEEEcccchhhhhcccCCccccc-----cccceee
Confidence 8888877776422 1111 1122222222211110 0001111 1124556
Q ss_pred cceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEecc
Q 037120 388 KPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGT 467 (489)
Q Consensus 388 ~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs 467 (489)
+++|+|+++.+++.+ .|++|++|+.... +....+.-. .+...+.+++|+|.|.+||+++
T Consensus 193 ~~aW~Pk~g~la~~~-~d~~Vkvy~r~~w----------e~~f~Lr~~----------~~ss~~~~~~wsPnG~YiAAs~ 251 (933)
T KOG1274|consen 193 RLAWHPKGGTLAVPP-VDNTVKVYSRKGW----------ELQFKLRDK----------LSSSKFSDLQWSPNGKYIAAST 251 (933)
T ss_pred eeeecCCCCeEEeec-cCCeEEEEccCCc----------eeheeeccc----------ccccceEEEEEcCCCcEEeeec
Confidence 799999999988874 7899999998877 544444311 3455599999999999999999
Q ss_pred CcceeEEEeccc
Q 037120 468 KNSSLLVVSQKQ 479 (489)
Q Consensus 468 ~dg~i~v~~~~~ 479 (489)
.||.|.||..+.
T Consensus 252 ~~g~I~vWnv~t 263 (933)
T KOG1274|consen 252 LDGQILVWNVDT 263 (933)
T ss_pred cCCcEEEEeccc
Confidence 999999998884
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=156.57 Aligned_cols=163 Identities=10% Similarity=0.213 Sum_probs=124.5
Q ss_pred CCcEEEE--EecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEE
Q 037120 107 KGIYLVS--ATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIY 184 (489)
Q Consensus 107 ~g~~la~--g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vw 184 (489)
+...+|+ .+..|.|.||++...-..... .+. ....+.-|+.+.|+|.....|+.+++| |.|++|
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrLPDg------v~p-------~l~Ngt~vtDl~WdPFD~~rLAVa~dd-g~i~lW 655 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRLPDG------VMP-------GLFNGTLVTDLHWDPFDDERLAVATDD-GQINLW 655 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCCCcc------ccc-------ccccCceeeecccCCCChHHeeecccC-ceEEEE
Confidence 3444443 455789999999873222211 110 111122299999999988899999988 999999
Q ss_pred EeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEE
Q 037120 185 DIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQL 264 (489)
Q Consensus 185 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~ 264 (489)
.+..+.... ....+.... ..|...|+++.|+|-..+.|++++.|.+|++||+++.+ ....+.+|.+.|..++|
T Consensus 656 r~~a~gl~e-~~~tPe~~l----t~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~--~~~~l~gHtdqIf~~AW 728 (1012)
T KOG1445|consen 656 RLTANGLPE-NEMTPEKIL----TIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAK--LYSRLVGHTDQIFGIAW 728 (1012)
T ss_pred EeccCCCCc-ccCCcceee----ecccceEEEEEecchhhhHhhhhhccceeeeeehhhhh--hhheeccCcCceeEEEE
Confidence 996554321 233334433 78999999999999888899999999999999999987 33356699999999999
Q ss_pred eecCCEEEEEeCCCeEEEEEcCCCcc
Q 037120 265 HAENQIIFAAGKHGSIYLWDLRGGRT 290 (489)
Q Consensus 265 ~p~~~~l~~~~~dg~i~lwd~~~~~~ 290 (489)
+|+|+.+++.+.||+|++|..+++..
T Consensus 729 SpdGr~~AtVcKDg~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 729 SPDGRRIATVCKDGTLRVYEPRSREQ 754 (1012)
T ss_pred CCCCcceeeeecCceEEEeCCCCCCC
Confidence 99999999999999999999998654
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-16 Score=133.33 Aligned_cols=183 Identities=13% Similarity=0.131 Sum_probs=128.8
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
|.+-+++|.+++|++|..+|.|.++.+.+......++ ++ . ..-....+|... |..++|..+ +|++++ |
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~-~g--k-~~iv~eqahdgp---iy~~~f~d~---~Lls~g--d 80 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEP-PG--K-LKIVPEQAHDGP---IYYLAFHDD---FLLSGG--D 80 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCC-CC--C-cceeeccccCCC---eeeeeeehh---heeecc--C
Confidence 5556799999999999999999999988743322211 00 1 111122557777 777999843 777888 6
Q ss_pred CEEEEEEeccCCCC--CceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC
Q 037120 179 NVVSIYDIGYISDE--PVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 179 g~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~ 256 (489)
|.|+-|..+..... ....+. .....+...-.-..|+++...|..+ -++.++.|+.++-||+++++ ..+.+.+|+
T Consensus 81 G~V~gw~W~E~~es~~~K~lwe-~~~P~~~~~~evPeINam~ldP~en-Si~~AgGD~~~y~~dlE~G~--i~r~~rGHt 156 (325)
T KOG0649|consen 81 GLVYGWEWNEEEESLATKRLWE-VKIPMQVDAVEVPEINAMWLDPSEN-SILFAGGDGVIYQVDLEDGR--IQREYRGHT 156 (325)
T ss_pred ceEEEeeehhhhhhccchhhhh-hcCccccCcccCCccceeEeccCCC-cEEEecCCeEEEEEEecCCE--EEEEEcCCc
Confidence 99999988654321 111111 1101111011224789999999888 45555579999999999998 667888999
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecC
Q 037120 257 GTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNH 297 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~ 297 (489)
+.|.++.--.....+++|+.||++|+||+++++++..+...
T Consensus 157 DYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~y 197 (325)
T KOG0649|consen 157 DYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPY 197 (325)
T ss_pred ceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccc
Confidence 99999998555667899999999999999999987777643
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.6e-18 Score=168.73 Aligned_cols=256 Identities=16% Similarity=0.207 Sum_probs=174.3
Q ss_pred CCCceeEEEECCCCcE----EEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 95 GKPGISALDFDCKGIY----LVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~----la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
....-+.++|.+.|.. ||.|..||.|.+||......-. ...-......|++. |..+.|++...++
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~--------~~~~la~~~~h~G~---V~gLDfN~~q~nl 131 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANA--------SEEVLATKSKHTGP---VLGLDFNPFQGNL 131 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhccCc--------chHHHhhhcccCCc---eeeeeccccCCce
Confidence 3445788999988776 8999999999999988731101 11112223457777 8889999999889
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
|++|+.| |.|.|||++..... +... ...-...|.+++|+..-.+.|++++.+|.+.|||+|.. +++++
T Consensus 132 LASGa~~-geI~iWDlnn~~tP----~~~~------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~-~pii~ 199 (1049)
T KOG0307|consen 132 LASGADD-GEILIWDLNKPETP----FTPG------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKK-KPIIK 199 (1049)
T ss_pred eeccCCC-CcEEEeccCCcCCC----CCCC------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCC-Ccccc
Confidence 9999988 99999999642211 1110 12244689999999998889999999999999999986 34343
Q ss_pred ecc-CCCCceeEEEEeecCCE-EEEEeC---CCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCCC-cceeecccc
Q 037120 251 LST-GSHGTLNSIQLHAENQI-IFAAGK---HGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASML-EKIGTLKAQ 323 (489)
Q Consensus 251 ~~~-~h~~~v~~~~~~p~~~~-l~~~~~---dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~-~~i~~~~~~ 323 (489)
... .....+..++|+|++.. +++++. .-.|.+||+|.-.. ++.+++|+.. |.++.|++.+ .++.+...+
T Consensus 200 ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~G----ilslsWc~~D~~lllSsgkD 275 (1049)
T KOG0307|consen 200 LSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRG----ILSLSWCPQDPRLLLSSGKD 275 (1049)
T ss_pred cccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccc----eeeeccCCCCchhhhcccCC
Confidence 222 22245789999998754 444444 34799999998655 8888899988 9999998876 333332111
Q ss_pred ceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeec
Q 037120 324 SKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSS 403 (489)
Q Consensus 324 ~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs 403 (489)
..-+.++++ ++.+..-......|..+ +.|.|.....++.++
T Consensus 276 -------~~ii~wN~~--------------------tgEvl~~~p~~~nW~fd------------v~w~pr~P~~~A~as 316 (1049)
T KOG0307|consen 276 -------NRIICWNPN--------------------TGEVLGELPAQGNWCFD------------VQWCPRNPSVMAAAS 316 (1049)
T ss_pred -------CCeeEecCC--------------------CceEeeecCCCCcceee------------eeecCCCcchhhhhe
Confidence 112223332 22222211112234444 567777788888999
Q ss_pred CCCcEEEEeccCC
Q 037120 404 SDHGIHLLDFFPG 416 (489)
Q Consensus 404 ~d~~i~vwd~~~~ 416 (489)
-||.|-|+.+...
T Consensus 317 fdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 317 FDGKISIYSLQGT 329 (1049)
T ss_pred eccceeeeeeecC
Confidence 9999999999876
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-17 Score=154.36 Aligned_cols=202 Identities=17% Similarity=0.196 Sum_probs=147.3
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..+..+|++++|.|....|++++.||+|++|+++.... ... +..++...+.+|..+ |.|++..+.++ .+
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~-s~~-----~~~epi~tfraH~gP---Vl~v~v~~n~~-~~ 359 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKK-SAE-----KDVEPILTFRAHEGP---VLCVVVPSNGE-HC 359 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCC-ccc-----cceeeeEEEecccCc---eEEEEecCCce-EE
Confidence 444566799999999999999999999999999955111 111 257788888999999 99999999986 77
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
.+|+.| |+|+.|++. ....+-... ........+.||++.|+.+++++... .|++|+.||++++|+........+..
T Consensus 360 ysgg~D-g~I~~w~~p-~n~dp~ds~-dp~vl~~~l~Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~~~~~f~~ 435 (577)
T KOG0642|consen 360 YSGGID-GTIRCWNLP-PNQDPDDSY-DPSVLSGTLLGHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEESPCTFGE 435 (577)
T ss_pred EeeccC-ceeeeeccC-CCCCccccc-Ccchhccceeccccceeeeeeccccc-ceeeecCCceEEeeccCCcCccccCC
Confidence 788888 999999885 222221111 11223444589999999999999888 89999999999999875433200000
Q ss_pred ------------------------------------------cc-------CCCCceeEEEEeecCCEEEEEeCCCeEEE
Q 037120 252 ------------------------------------------ST-------GSHGTLNSIQLHAENQIIFAAGKHGSIYL 282 (489)
Q Consensus 252 ------------------------------------------~~-------~h~~~v~~~~~~p~~~~l~~~~~dg~i~l 282 (489)
+. .-...++-+.++|.+.+.+++..|+.|++
T Consensus 436 ~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~ 515 (577)
T KOG0642|consen 436 PKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRF 515 (577)
T ss_pred ccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceec
Confidence 00 00134567788888888888888999999
Q ss_pred EEcCCCcccceeecCCccCCCCeeEEEeC
Q 037120 283 WDLRGGRTSAPFHNHKEVCHLPLTSLKLA 311 (489)
Q Consensus 283 wd~~~~~~~~~~~~~~~~~~~~v~~l~~~ 311 (489)
+|..+++.+.....|... ++++++.
T Consensus 516 ~dn~~~~~l~s~~a~~~s----vtslai~ 540 (577)
T KOG0642|consen 516 FDNKTGKILHSMVAHKDS----VTSLAID 540 (577)
T ss_pred ccccccccchheeeccce----ecceeec
Confidence 999888888777777666 5555433
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.5e-17 Score=145.34 Aligned_cols=164 Identities=13% Similarity=0.169 Sum_probs=130.6
Q ss_pred cCCCceeEEEECCC-CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 94 FGKPGISALDFDCK-GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 94 ~~~~~V~~~~fs~~-g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
.|...|.+++|+.. .+.||+|+.|.+|++||+.++++... +..|... |.+++|+|.....|+
T Consensus 241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s--------------~~~~~k~---Vq~l~wh~~~p~~LL 303 (463)
T KOG0270|consen 241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSS--------------ITHHGKK---VQTLEWHPYEPSVLL 303 (463)
T ss_pred cchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCccee--------------hhhcCCc---eeEEEecCCCceEEE
Confidence 35556888888876 57899999999999999999665542 2335555 999999999999999
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeec
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELS 252 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 252 (489)
+|+.| ++|.+.|.+...... . ... -.+.|-.++|.|...+.++++..||+|+-+|+|...++ +...
T Consensus 304 sGs~D-~~V~l~D~R~~~~s~-~----~wk-------~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~-vwt~ 369 (463)
T KOG0270|consen 304 SGSYD-GTVALKDCRDPSNSG-K----EWK-------FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP-VWTL 369 (463)
T ss_pred ecccc-ceEEeeeccCccccC-c----eEE-------eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc-eeEE
Confidence 99999 999999997522111 1 111 23489999999999989999999999999999998655 4467
Q ss_pred cCCCCceeEEEEeecCCEE-EEEeCCCeEEEEEcCCC
Q 037120 253 TGSHGTLNSIQLHAENQII-FAAGKHGSIYLWDLRGG 288 (489)
Q Consensus 253 ~~h~~~v~~~~~~p~~~~l-~~~~~dg~i~lwd~~~~ 288 (489)
.+|.++|.++++++.-+.+ .+++.|+.|++|++..-
T Consensus 370 ~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 370 KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred EeccCCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 7999999999999977664 45566999999998753
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.2e-16 Score=131.44 Aligned_cols=294 Identities=15% Similarity=0.180 Sum_probs=179.3
Q ss_pred ceeEEEECC---CCcEEEEEec----CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCC--
Q 037120 98 GISALDFDC---KGIYLVSATR----SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQ-- 168 (489)
Q Consensus 98 ~V~~~~fs~---~g~~la~g~~----dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~-- 168 (489)
.+.++.|+. ...+||.|+. ...|.|-.+....- .... .......++++.+.|.|+..
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~----------e~~~----~a~fd~~YP~tK~~wiPd~~g~ 111 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG----------ELVE----DANFDHPYPVTKLMWIPDSKGV 111 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC----------ceec----cCCCCCCCCccceEecCCcccc
Confidence 367778873 2567888885 45666665553111 1111 11123345588899999863
Q ss_pred --CEEEEEecCCCEEEEEEeccCCCC--CceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 037120 169 --DEVACASTRSNVVSIYDIGYISDE--PVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVG 244 (489)
Q Consensus 169 --~~l~s~~~d~g~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 244 (489)
.+|++++ -.+|+|.+...... ...++...+ -..+..++++..|+.-.++++.++|-|.+..|||++++
T Consensus 112 ~pdlLATs~---D~LRlWri~~ee~~~~~~~~L~~~k-----ns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~ 183 (364)
T KOG0290|consen 112 YPDLLATSS---DFLRLWRIGDEESRVELQSVLNNNK-----NSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETG 183 (364)
T ss_pred Ccchhhccc---CeEEEEeccCcCCceehhhhhccCc-----ccccCCcccccccccCCcceeEeecccCeEEEEEEeec
Confidence 3666665 49999999632211 111222111 15577899999999999989999999999999999987
Q ss_pred CcC-ceeeccCCCCceeEEEEeecCCEE-EEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCC-cceeecc
Q 037120 245 VLP-SLELSTGSHGTLNSIQLHAENQII-FAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASML-EKIGTLK 321 (489)
Q Consensus 245 ~~~-~~~~~~~h~~~v~~~~~~p~~~~l-~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~i~~~~ 321 (489)
..- +...+.+|..+|..++|...+..+ ++.|.||.+|+||+|..+-...+..... ...|...|+|++.. .+++++
T Consensus 184 ~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~-~~~pLlRLswnkqDpnymATf- 261 (364)
T KOG0290|consen 184 VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS-PSTPLLRLSWNKQDPNYMATF- 261 (364)
T ss_pred cccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC-CCCcceeeccCcCCchHHhhh-
Confidence 321 223344999999999999876654 5557799999999998664322221111 12446677777654 333332
Q ss_pred ccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEe
Q 037120 322 AQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVG 401 (489)
Q Consensus 322 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 401 (489)
..+..=..++++..... + -.....++..+..++|.|.....+.+
T Consensus 262 -------------------------~~dS~~V~iLDiR~P~t------p-----va~L~~H~a~VNgIaWaPhS~~hict 305 (364)
T KOG0290|consen 262 -------------------------AMDSNKVVILDIRVPCT------P-----VARLRNHQASVNGIAWAPHSSSHICT 305 (364)
T ss_pred -------------------------hcCCceEEEEEecCCCc------c-----eehhhcCcccccceEecCCCCceeee
Confidence 22221112333321100 0 00011122345667899988999999
Q ss_pred ecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCC-CeEEeccC
Q 037120 402 SSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLN-NTIVAGTK 468 (489)
Q Consensus 402 gs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~-~~i~sgs~ 468 (489)
+++|..+.+||+...... . ..-+.+. ..-.++|+.+.|+|.. ..|+.+..
T Consensus 306 aGDD~qaliWDl~q~~~~--~----~~dPila-----------y~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 306 AGDDCQALIWDLQQMPRE--N----GEDPILA-----------YTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred cCCcceEEEEeccccccc--C----CCCchhh-----------hhccceeeeeeecccCCCEEEEEec
Confidence 999999999999866110 0 0001111 1245789999999866 47776654
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.2e-16 Score=152.56 Aligned_cols=312 Identities=15% Similarity=0.123 Sum_probs=182.9
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEee-CCCCCEEEEEecC
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWN-LANQDEVACASTR 177 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~-~~~~~~l~s~~~d 177 (489)
-..+.|+|-...++++...-.|+|||++..+....- ..+......|+.+.+- .+...++++++.|
T Consensus 1067 pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F--------------~n~~~~~t~Vs~l~liNe~D~aLlLtas~d 1132 (1387)
T KOG1517|consen 1067 PKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGF--------------DNGAFPDTRVSDLELINEQDDALLLTASSD 1132 (1387)
T ss_pred CceeeecCCCceeEEcCCcceEEEEecccCceeccc--------------cCCCCCCCccceeeeecccchhheeeeccC
Confidence 566788998889999988889999999986665421 1112223348888874 4445588888888
Q ss_pred CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCC
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHG 257 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~ 257 (489)
|.|+||+-.....++.+.+.-.....-.+.+-.+.=.-+.|..... +|+++|.-..|+|||..... .+.....+-+.
T Consensus 1133 -GvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G-~Ll~tGd~r~IRIWDa~~E~-~~~diP~~s~t 1209 (1387)
T KOG1517|consen 1133 -GVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG-HLLVTGDVRSIRIWDAHKEQ-VVADIPYGSST 1209 (1387)
T ss_pred -ceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC-eEEecCCeeEEEEEecccce-eEeecccCCCc
Confidence 9999998744332222222222211111111111224467887777 66666668899999998743 22223334456
Q ss_pred ceeEEEEee-cCCEEEEEeCCCeEEEEEcCCCcc---cceeecCCccCCCCeeEEEeCCCCc-ceeeccccceeecccee
Q 037120 258 TLNSIQLHA-ENQIIFAAGKHGSIYLWDLRGGRT---SAPFHNHKEVCHLPLTSLKLASMLE-KIGTLKAQSKIVSQEIH 332 (489)
Q Consensus 258 ~v~~~~~~p-~~~~l~~~~~dg~i~lwd~~~~~~---~~~~~~~~~~~~~~v~~l~~~~~~~-~i~~~~~~~~~~~~~i~ 332 (489)
.|+++.-+- .|+.+++|..||.|++||.|.... +...+.|... .+|..+.+.+.|- .+.+
T Consensus 1210 ~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~--~~Iv~~slq~~G~~elvS------------- 1274 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDV--EPIVHLSLQRQGLGELVS------------- 1274 (1387)
T ss_pred cceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCc--ccceeEEeecCCCcceee-------------
Confidence 677766543 468888888899999999997543 5555566644 4466666665542 1222
Q ss_pred EEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEe
Q 037120 333 SIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLD 412 (489)
Q Consensus 333 ~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd 412 (489)
++.++. ..++++..........+...|...... +.-..-....++++|+. +.|+||+
T Consensus 1275 -------------gs~~G~-I~~~DlR~~~~e~~~~iv~~~~yGs~l--------Tal~VH~hapiiAsGs~-q~ikIy~ 1331 (1387)
T KOG1517|consen 1275 -------------GSQDGD-IQLLDLRMSSKETFLTIVAHWEYGSAL--------TALTVHEHAPIIASGSA-QLIKIYS 1331 (1387)
T ss_pred -------------eccCCe-EEEEecccCcccccceeeeccccCccc--------eeeeeccCCCeeeecCc-ceEEEEe
Confidence 111111 112222111000000000011001000 00001112667888887 9999999
Q ss_pred ccCCCCCCeeeccCcccchhhHhhhhcccCCccc-CCCceEEEEeeCCCCeEEeccCcceeEEEecccccc
Q 037120 413 FFPGSSSPSHVDYNEDIESLSERTKLKKENRFVP-LSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQCT 482 (489)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~~ 482 (489)
+... .+..+. ..+.|.+ -.+.+.+++|||....+|+|+.|..|.||+-.+.-+
T Consensus 1332 ~~G~-----------~l~~~k------~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~~ 1385 (1387)
T KOG1517|consen 1332 LSGE-----------QLNIIK------YNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPRL 1385 (1387)
T ss_pred cChh-----------hhcccc------cCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcCC
Confidence 9755 222222 1133433 346689999999999999999999999999887654
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.7e-16 Score=149.79 Aligned_cols=265 Identities=13% Similarity=0.124 Sum_probs=173.6
Q ss_pred CCceeEEEECCC-CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCC-CEEEE
Q 037120 96 KPGISALDFDCK-GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQ-DEVAC 173 (489)
Q Consensus 96 ~~~V~~~~fs~~-g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~-~~l~s 173 (489)
...|+|+.|+|. ..+||.|+.+|.|.+||+........- ... .....|... |+.+.|..+.. .-+++
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s------~ls--~~~~sh~~~---v~~vvW~~~~~~~~f~s 310 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPS------GLS--ALEVSHSEP---VTAVVWLQNEHNTEFFS 310 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCc------ccc--cccccCCcC---eEEEEEeccCCCCceEE
Confidence 456999999996 567788888999999999884432100 000 001225555 88899965433 24666
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEE---CCCCCc---C
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWD---RRVGVL---P 247 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd---~~~~~~---~ 247 (489)
++.| |.|+.|+++.........+.....-...-..-...+++++|.+..++.|+.|+++|.|.--+ .+.... .
T Consensus 311 ~ssD-G~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~ 389 (555)
T KOG1587|consen 311 LSSD-GSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYK 389 (555)
T ss_pred EecC-CcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccc
Confidence 6667 99999998643321111111000000000123458899999999999999999999998733 222220 0
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcC-CCcccceeecCCccCCCCeeEEEeCCCCcceeecccccee
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLR-GGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKI 326 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~-~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~ 326 (489)
.......|.++|+++.++|-+..++.++.|.+++||... ....+..+..+... |++++|||
T Consensus 390 ~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~----v~~vaWSp-------------- 451 (555)
T KOG1587|consen 390 GHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDY----VTDVAWSP-------------- 451 (555)
T ss_pred ccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccce----eeeeEEcC--------------
Confidence 122344788999999999999988888889999999977 43445455444433 44444443
Q ss_pred eccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCC
Q 037120 327 VSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDH 406 (489)
Q Consensus 327 ~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~ 406 (489)
.....++++..||
T Consensus 452 -------------------------------------------------------------------trpavF~~~d~~G 464 (555)
T KOG1587|consen 452 -------------------------------------------------------------------TRPAVFATVDGDG 464 (555)
T ss_pred -------------------------------------------------------------------cCceEEEEEcCCC
Confidence 2245667778999
Q ss_pred cEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 407 GIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 407 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
.|.|||+... ..-+..... -+....+.+.|++.+..|+.|...|.+.++.-
T Consensus 465 ~l~iWDLl~~----------~~~Pv~s~~----------~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 465 NLDIWDLLQD----------DEEPVLSQK----------VCSPALTRVRWSPNGKLLAVGDANGTTHILKL 515 (555)
T ss_pred ceehhhhhcc----------ccCCccccc----------ccccccceeecCCCCcEEEEecCCCcEEEEEc
Confidence 9999999876 222222210 23456678888999999999999999999865
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-16 Score=140.75 Aligned_cols=171 Identities=18% Similarity=0.205 Sum_probs=134.7
Q ss_pred cccCCCceeEEEECCC-CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDCK-GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~-g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..|...|..++|+|- ...||+|+.|.+|.||.+........ ..++...+.+|... |.-|+|+|...++
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~-------ltepvv~L~gH~rr---Vg~V~wHPtA~NV 146 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD-------LTEPVVELYGHQRR---VGLVQWHPTAPNV 146 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccC-------cccceEEEeeccee---EEEEeecccchhh
Confidence 5667778999999996 56789999999999999987444332 24556667888888 8889999999999
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
|++++.| ++|.+||+.++. .+ .++. |.+.|.++.|+.+|. +|+|.+.|..|+|||.++++ .+.
T Consensus 147 Llsag~D-n~v~iWnv~tge-----al-------i~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~--~v~ 209 (472)
T KOG0303|consen 147 LLSAGSD-NTVSIWNVGTGE-----AL-------ITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGT--VVS 209 (472)
T ss_pred HhhccCC-ceEEEEeccCCc-----ee-------eecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCc--Eee
Confidence 9999988 999999994432 11 1123 999999999999999 99999999999999999987 554
Q ss_pred eccCCCCc-eeEEEEeecCCEEEEEeC----CCeEEEEEcCCCcc
Q 037120 251 LSTGSHGT-LNSIQLHAENQIIFAAGK----HGSIYLWDLRGGRT 290 (489)
Q Consensus 251 ~~~~h~~~-v~~~~~~p~~~~l~~~~~----dg~i~lwd~~~~~~ 290 (489)
.-.+|.+. -.-+.|-.++. ++++|. +..+-|||..+.+.
T Consensus 210 e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~e 253 (472)
T KOG0303|consen 210 EGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEE 253 (472)
T ss_pred ecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccC
Confidence 44577654 33566778888 555543 88999999887654
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=145.48 Aligned_cols=188 Identities=15% Similarity=0.226 Sum_probs=149.9
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|...|+++.++....|||+++..|.|.|..+.+...... + .| ..+..|.-+.|+|....+|
T Consensus 117 lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~--------------f-~~-~sgqsvRll~ys~skr~lL 180 (673)
T KOG4378|consen 117 LKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTT--------------F-TI-DSGQSVRLLRYSPSKRFLL 180 (673)
T ss_pred ccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccc--------------e-ec-CCCCeEEEeecccccceee
Confidence 445666699999999999999999999999999987333221 1 11 1111277899999998899
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
.+++++ |.|.+||+..... +.+-...|..+...|+|+|.++.+|++.+.|+.|.+||++..... ..
T Consensus 181 ~~asd~-G~VtlwDv~g~sp-----------~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~--~~ 246 (673)
T KOG4378|consen 181 SIASDK-GAVTLWDVQGMSP-----------IFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAST--DR 246 (673)
T ss_pred EeeccC-CeEEEEeccCCCc-----------ccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccc--ce
Confidence 999988 9999999943211 112236799999999999999989999999999999999975422 11
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCCC
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASML 314 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~ 314 (489)
+ .-+.+.++++|.++|.+|++|...|.|..||+|..+. +..+..|... |++++|-+.-
T Consensus 247 l-~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~s----Vt~vafq~s~ 305 (673)
T KOG4378|consen 247 L-TYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDAS----VTRVAFQPSP 305 (673)
T ss_pred e-eecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccc----eeEEEeeecc
Confidence 1 2356899999999999999999999999999998665 8888999988 9999998875
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.2e-16 Score=146.80 Aligned_cols=275 Identities=14% Similarity=0.158 Sum_probs=179.9
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
.|..++|-|||.-|+.+..+ .+.|||.+.+.... ++ .+|... |.||+|+.+|+ .+++|+.|
T Consensus 14 ci~d~afkPDGsqL~lAAg~-rlliyD~ndG~llq--------tL------KgHKDt---VycVAys~dGk-rFASG~aD 74 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGS-RLLVYDTSDGTLLQ--------PL------KGHKDT---VYCVAYAKDGK-RFASGSAD 74 (1081)
T ss_pred chheeEECCCCceEEEecCC-EEEEEeCCCccccc--------cc------ccccce---EEEEEEccCCc-eeccCCCc
Confidence 69999999999888777644 68999999855554 23 556666 99999999996 89999988
Q ss_pred CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCC
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHG 257 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~ 257 (489)
..|.+|.-... .. .+ ..|.+.|.++.|+|-.. .+++|+- ...-+|...... +.+. ....
T Consensus 75 -K~VI~W~~klE-----G~---Lk------YSH~D~IQCMsFNP~~h-~LasCsL-sdFglWS~~qK~--V~K~--kss~ 133 (1081)
T KOG1538|consen 75 -KSVIIWTSKLE-----GI---LK------YSHNDAIQCMSFNPITH-QLASCSL-SDFGLWSPEQKS--VSKH--KSSS 133 (1081)
T ss_pred -eeEEEeccccc-----ce---ee------eccCCeeeEeecCchHH-Hhhhcch-hhccccChhhhh--HHhh--hhhe
Confidence 99999987211 11 22 45899999999999988 8999984 345678766533 2222 2256
Q ss_pred ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeC
Q 037120 258 TLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLD 337 (489)
Q Consensus 258 ~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 337 (489)
.+.+++|..||++++.|-.+|+|.+=+- +++..-.++. .+....||.+++|+|....-. .++
T Consensus 134 R~~~CsWtnDGqylalG~~nGTIsiRNk-~gEek~~I~R-pgg~Nspiwsi~~~p~sg~G~----------~di------ 195 (1081)
T KOG1538|consen 134 RIICCSWTNDGQYLALGMFNGTISIRNK-NGEEKVKIER-PGGSNSPIWSICWNPSSGEGR----------NDI------ 195 (1081)
T ss_pred eEEEeeecCCCcEEEEeccCceEEeecC-CCCcceEEeC-CCCCCCCceEEEecCCCCCCc----------cce------
Confidence 7899999999999999999999998753 3444333332 111135699999988643100 000
Q ss_pred CCCCeEEEEEecCCceEEEEeec--cceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccC
Q 037120 338 PSCSYQLAFHLDDGWSGVLDVYN--SRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFP 415 (489)
Q Consensus 338 p~~~~~~~~~~~~~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~ 415 (489)
+++. .|...+..++ |....... ...|.+ ..+++.++ |.|++.|+.|+.+.+|--.
T Consensus 196 -----~aV~----DW~qTLSFy~LsG~~Igk~r-~L~FdP-----------~CisYf~N-GEy~LiGGsdk~L~~fTR~- 252 (1081)
T KOG1538|consen 196 -----LAVA----DWGQTLSFYQLSGKQIGKDR-ALNFDP-----------CCISYFTN-GEYILLGGSDKQLSLFTRD- 252 (1081)
T ss_pred -----EEEE----eccceeEEEEecceeecccc-cCCCCc-----------hhheeccC-CcEEEEccCCCceEEEeec-
Confidence 1110 1332222221 11110000 001111 12334444 5566666788999998543
Q ss_pred CCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEE
Q 037120 416 GSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVV 475 (489)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~ 475 (489)
+ -.+..+. .....|..|+.+|++..++.|-.||+|.-|
T Consensus 253 G----------vrLGTvg------------~~D~WIWtV~~~PNsQ~v~~GCqDGTiACy 290 (1081)
T KOG1538|consen 253 G----------VRLGTVG------------EQDSWIWTVQAKPNSQYVVVGCQDGTIACY 290 (1081)
T ss_pred C----------eEEeecc------------ccceeEEEEEEccCCceEEEEEccCeeehh
Confidence 3 3344444 566789999999999999999999999764
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-16 Score=140.13 Aligned_cols=155 Identities=12% Similarity=0.236 Sum_probs=130.2
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
|.++.|.+...+.+++|+.| ..|++|-+......... ..-.+...+..|...|+.+.|+|+|. ++++|+.+|.|.
T Consensus 16 v~s~dfq~n~~~~laT~G~D-~~iriW~v~r~~~~~~~---~~V~y~s~Ls~H~~aVN~vRf~p~ge-lLASg~D~g~v~ 90 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATAGGD-KDIRIWKVNRSEPGGGD---MKVEYLSSLSRHTRAVNVVRFSPDGE-LLASGGDGGEVF 90 (434)
T ss_pred eEEEEeccCcccceecccCc-cceeeeeeeecCCCCCc---eeEEEeecccCCcceeEEEEEcCCcC-eeeecCCCceEE
Confidence 88999999887799999988 99999999654332211 12235556799999999999999999 999999999999
Q ss_pred EEECC--------C------CCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCC
Q 037120 238 IWDRR--------V------GVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHL 303 (489)
Q Consensus 238 iwd~~--------~------~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~ 303 (489)
+|-.. + ......+...+|...|..++|+|++.++++++-|+.+++||+..|+.+..+..|...
T Consensus 91 lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y--- 167 (434)
T KOG1009|consen 91 LWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHY--- 167 (434)
T ss_pred EEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccc---
Confidence 99766 2 112244556689999999999999999999999999999999999999999999988
Q ss_pred CeeEEEeCCCCcceeecc
Q 037120 304 PLTSLKLASMLEKIGTLK 321 (489)
Q Consensus 304 ~v~~l~~~~~~~~i~~~~ 321 (489)
+..++|.|-+++++++.
T Consensus 168 -vqgvawDpl~qyv~s~s 184 (434)
T KOG1009|consen 168 -VQGVAWDPLNQYVASKS 184 (434)
T ss_pred -cceeecchhhhhhhhhc
Confidence 99999999999997644
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.8e-16 Score=133.62 Aligned_cols=219 Identities=13% Similarity=0.182 Sum_probs=146.1
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC-CCCEEEEEec
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA-NQDEVACAST 176 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~-~~~~l~s~~~ 176 (489)
.|.|+.|.|++..||+-. |..|.+|+++.......+. ....-..|... .++-+|+|. ..+.+++.+
T Consensus 125 ~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev--------~ss~s~e~~~~---ftsg~WspHHdgnqv~tt~- 191 (370)
T KOG1007|consen 125 KINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEV--------LSSESAEMRHS---FTSGAWSPHHDGNQVATTS- 191 (370)
T ss_pred ceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheee--------cccccccccce---ecccccCCCCccceEEEeC-
Confidence 599999999999999887 7889999998754422110 00001123334 677899983 334676666
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~ 256 (489)
++++..||+++... ...++ ..|...|.++.|+|+-+++|++|+.||.|+|||.|..+.+ ++.+.+|.
T Consensus 192 -d~tl~~~D~RT~~~-----~~sI~------dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~p-v~el~~Hs 258 (370)
T KOG1007|consen 192 -DSTLQFWDLRTMKK-----NNSIE------DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFP-VQELPGHS 258 (370)
T ss_pred -CCcEEEEEccchhh-----hcchh------hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcc-ccccCCCc
Confidence 59999999964321 11122 5588899999999999999999999999999999987665 55777999
Q ss_pred CceeEEEEeec-CCEEEEEeCCCeEEEEEcCCCcccceee-cCCcc---CCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 257 GTLNSIQLHAE-NQIIFAAGKHGSIYLWDLRGGRTSAPFH-NHKEV---CHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 257 ~~v~~~~~~p~-~~~l~~~~~dg~i~lwd~~~~~~~~~~~-~~~~~---~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
..|.++.|+|. .+++++||+|..|.+|-...-..-..+. .+... .......+.--+|| .......+...|
T Consensus 259 HWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg-----~l~tydehEDSV 333 (370)
T KOG1007|consen 259 HWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDG-----QLETYDEHEDSV 333 (370)
T ss_pred eEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccc-----ccccccccccce
Confidence 99999999995 5667788889999999876533211111 11100 00001111111121 112344667778
Q ss_pred eEEEeCCCCCeEEEEE
Q 037120 332 HSIDLDPSCSYQLAFH 347 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~ 347 (489)
+.++++.-++.+++.-
T Consensus 334 Y~~aWSsadPWiFASL 349 (370)
T KOG1007|consen 334 YALAWSSADPWIFASL 349 (370)
T ss_pred EEEeeccCCCeeEEEe
Confidence 8888888777765543
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-16 Score=135.44 Aligned_cols=260 Identities=13% Similarity=0.155 Sum_probs=168.9
Q ss_pred ccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 93 SFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
.++...|+|+.|..++. |.+|..-|.|++|++++.+.... +. ..|... |+.+.--|++ .+.
T Consensus 11 Rp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~--------~r-----~~g~~~---it~lq~~p~d--~l~ 71 (323)
T KOG0322|consen 11 RPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPL--------IR-----LFGRLF---ITNLQSIPND--SLD 71 (323)
T ss_pred ccccchheehhhccchh-hhcccccceEEEEEeecCccchh--------hh-----hhccce---eeceeecCCc--chh
Confidence 35677899999988875 88999999999999998554431 11 012333 7778877864 566
Q ss_pred EEecCCCEEEEEEeccCCCC----------------------Cc-eeee-eceeeee-----------------ecCCcc
Q 037120 173 CASTRSNVVSIYDIGYISDE----------------------PV-EVLK-TRRSVTV-----------------VGSDVQ 211 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~----------------------~~-~~~~-~~~~~~~-----------------~~~~h~ 211 (489)
+-+.| +.+.+|++...... +. +.+. +.+.... .-.+..
T Consensus 72 tqgRd-~~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Kl 150 (323)
T KOG0322|consen 72 TQGRD-PLLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKL 150 (323)
T ss_pred hcCCC-ceEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhcccc
Confidence 67777 99999998652100 00 0000 0000000 001122
Q ss_pred cCeeEEEEecCC-C-cEEEEEeCCCcEEEEECCCCCcC--------ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEE
Q 037120 212 KGLSDLAFSAVN-T-SRLIASDTHGVVNIWDRRVGVLP--------SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIY 281 (489)
Q Consensus 212 ~~v~~~~~~~~~-~-~~l~s~s~dg~i~iwd~~~~~~~--------~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~ 281 (489)
+.+.+..+.-+. . -++++|-++|.+.+||+.++.+. .......|..+|.++.+.+.-..=++||.+..+.
T Consensus 151 gsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~ 230 (323)
T KOG0322|consen 151 GSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV 230 (323)
T ss_pred CceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce
Confidence 344444432222 2 24666779999999999986211 2223347899999999988666667788777888
Q ss_pred EEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeecc
Q 037120 282 LWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNS 361 (489)
Q Consensus 282 lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~ 361 (489)
.|.+....- .++ +..........|..+.+.|
T Consensus 231 ~~Sl~~s~g--slq------------------------~~~e~~lknpGv~gvrIRp----------------------- 261 (323)
T KOG0322|consen 231 MYSLNHSTG--SLQ------------------------IRKEITLKNPGVSGVRIRP----------------------- 261 (323)
T ss_pred eeeeccccC--ccc------------------------ccceEEecCCCccceEEcc-----------------------
Confidence 888764210 000 0000111112222222222
Q ss_pred ceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhccc
Q 037120 362 RVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKE 441 (489)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (489)
+ ++++++++-|+.||||+..+. +.+..+.
T Consensus 262 --------------D-------------------~KIlATAGWD~RiRVyswrtl----------~pLAVLk-------- 290 (323)
T KOG0322|consen 262 --------------D-------------------GKILATAGWDHRIRVYSWRTL----------NPLAVLK-------- 290 (323)
T ss_pred --------------C-------------------CcEEeecccCCcEEEEEeccC----------Cchhhhh--------
Confidence 2 778889999999999999999 8888888
Q ss_pred CCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 442 NRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 442 ~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
-|.+.|+++||||+.+.+|++|+|++|-+|.
T Consensus 291 ----yHsagvn~vAfspd~~lmAaaskD~rISLWk 321 (323)
T KOG0322|consen 291 ----YHSAGVNAVAFSPDCELMAAASKDARISLWK 321 (323)
T ss_pred ----hhhcceeEEEeCCCCchhhhccCCceEEeee
Confidence 8999999999999999999999999999996
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-15 Score=132.85 Aligned_cols=313 Identities=14% Similarity=0.142 Sum_probs=201.8
Q ss_pred EEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEE
Q 037120 102 LDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVV 181 (489)
Q Consensus 102 ~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i 181 (489)
+.|||+|+++|+.+.- .+.|-|.++.+...- +.. ... |.-+.|..+...++.....| +.|
T Consensus 14 c~fSp~g~yiAs~~~y-rlviRd~~tlq~~ql--------------f~c-ldk---i~yieW~ads~~ilC~~yk~-~~v 73 (447)
T KOG4497|consen 14 CSFSPCGNYIASLSRY-RLVIRDSETLQLHQL--------------FLC-LDK---IVYIEWKADSCHILCVAYKD-PKV 73 (447)
T ss_pred eeECCCCCeeeeeeee-EEEEeccchhhHHHH--------------HHH-HHH---hhheeeeccceeeeeeeecc-ceE
Confidence 4799999999999876 677788887443321 000 111 66699999988777777777 999
Q ss_pred EEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeE
Q 037120 182 SIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNS 261 (489)
Q Consensus 182 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~ 261 (489)
.+|++... .+.....+-.+++.+++|+|+|.++|.+..-|-.|.+|.+.+.+ +. .+......+..
T Consensus 74 qvwsl~Qp------------ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~--~~-~~~~pK~~~kg 138 (447)
T KOG4497|consen 74 QVWSLVQP------------EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQK--GY-LLPHPKTNVKG 138 (447)
T ss_pred EEEEeecc------------eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccce--eE-EecccccCcee
Confidence 99999321 12222244567899999999998778888899999999999865 33 22223455688
Q ss_pred EEEeecCCEEEEEeC-CC--eEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccc------eeecccee
Q 037120 262 IQLHAENQIIFAAGK-HG--SIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQS------KIVSQEIH 332 (489)
Q Consensus 262 ~~~~p~~~~l~~~~~-dg--~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~------~~~~~~i~ 332 (489)
++|+|+|++.+..+. |- .+.|........++.+....-- .+.+.|+|||..++-..... ....-.+.
T Consensus 139 ~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~D----ltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k 214 (447)
T KOG4497|consen 139 YAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTID----LTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLK 214 (447)
T ss_pred EEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCccc----ccCceECCCCcEEEEecchhhheeeeeeecccee
Confidence 999999999888876 21 2333322333335555544433 78999999999886533222 22346788
Q ss_pred EEEeCCCCCeEEEEEecCC--------ceEEEEe------eccc------------eeeecCCCCCCcCCC---------
Q 037120 333 SIDLDPSCSYQLAFHLDDG--------WSGVLDV------YNSR------------VSHVHCPPPAWLSDS--------- 377 (489)
Q Consensus 333 ~~~~~p~~~~~~~~~~~~~--------w~~~~~~------~~~~------------~~~~~~~~~~~~~~~--------- 377 (489)
.+.++|.++.++++..|.- |+..-.. .+.. ....+|. .|.+.+
T Consensus 215 ~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cL--sf~p~~~~a~~~~~s 292 (447)
T KOG4497|consen 215 FVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCL--SFTPTDLEAHIWEES 292 (447)
T ss_pred EEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhccccc--ccCCCccccCccccc
Confidence 9999999999998888743 4211000 0000 0000010 010000
Q ss_pred --------------------CccccccCCCcceeecCCcEEEEeec--CCCcEEEEeccCCCCCCeeeccCcccchhhHh
Q 037120 378 --------------------NNSADQLHLRKPSWLSTNSIYAVGSS--SDHGIHLLDFFPGSSSPSHVDYNEDIESLSER 435 (489)
Q Consensus 378 --------------------~~~~~~~~~~~~~~~~~~~~~l~sgs--~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 435 (489)
+..........++|+++ ..|+++-. .-+.+-+||+... +....+.
T Consensus 293 e~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~D-s~y~aTrnd~~PnalW~Wdlq~l----------~l~avLi-- 359 (447)
T KOG4497|consen 293 ETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCD-STYAATRNDKYPNALWLWDLQNL----------KLHAVLI-- 359 (447)
T ss_pred hhhhhhhhcceeeecccCCCCCCCcccccceeeecCC-ceEEeeecCCCCceEEEEechhh----------hhhhhhh--
Confidence 00011122345677776 55666532 2247999999877 5554444
Q ss_pred hhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 436 TKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 436 ~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
...+|.+..|+|..+.++.+.....+.+|+.-.
T Consensus 360 -----------Qk~piraf~WdP~~prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 360 -----------QKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred -----------hccceeEEEeCCCCceEEEEcCCceEEEEcCCC
Confidence 456899999999999888888888899987543
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.4e-15 Score=131.06 Aligned_cols=227 Identities=14% Similarity=0.203 Sum_probs=156.5
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..++-++|++.-..+|+++.|-+|++||-.. .+... ........|+|++|-|.+...|+.|.
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~----------------Lks~sQrnvtclawRPlsaselavgC- 160 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTK----------------LKSVSQRNVTCLAWRPLSASELAVGC- 160 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCce----------------ecchhhcceeEEEeccCCcceeeeee-
Confidence 3488899999888899999999999999877 22221 11111122999999999888899888
Q ss_pred CCCEEEEEEeccCCCCC--ceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCcCceeecc
Q 037120 177 RSNVVSIYDIGYISDEP--VEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THGVVNIWDRRVGVLPSLELST 253 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~ 253 (489)
.+-|++|......... .........-+....|| ..|++++|.+||. .+++++ .|..|.|||..++....+. .
T Consensus 161 -r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt-~l~tAS~gsssi~iWdpdtg~~~pL~--~ 235 (445)
T KOG2139|consen 161 -RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT-ILVTASFGSSSIMIWDPDTGQKIPLI--P 235 (445)
T ss_pred -cceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC-EEeecccCcceEEEEcCCCCCccccc--c
Confidence 6799999884321111 00001011111122556 6999999999999 888888 7789999999998744332 2
Q ss_pred CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC-CcccceeecCCccCCCCeeEEEeCCCCcce----------eec--
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRG-GRTSAPFHNHKEVCHLPLTSLKLASMLEKI----------GTL-- 320 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~-~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i----------~~~-- 320 (489)
..-+.++-+.|+||+.+++++..|+..++|.... ..+.+-..+ .+. |....|+|+|+.+ .++
T Consensus 236 ~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lg-sgr----vqtacWspcGsfLLf~~sgsp~lysl~f 310 (445)
T KOG2139|consen 236 KGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILG-SGR----VQTACWSPCGSFLLFACSGSPRLYSLTF 310 (445)
T ss_pred cCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceecc-CCc----eeeeeecCCCCEEEEEEcCCceEEEEee
Confidence 2357788999999999999999999999995543 322222222 334 9999999999877 000
Q ss_pred -------c--------------------ccceeeccceeEEEeCCCCCeEEEEEecCC
Q 037120 321 -------K--------------------AQSKIVSQEIHSIDLDPSCSYQLAFHLDDG 351 (489)
Q Consensus 321 -------~--------------------~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~ 351 (489)
. +.......++..++++|.|.|+++.-....
T Consensus 311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCc
Confidence 0 000111456789999999999988766655
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.3e-15 Score=147.72 Aligned_cols=342 Identities=15% Similarity=0.122 Sum_probs=189.6
Q ss_pred cccCCCceeEEEECCC-CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDCK-GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~-g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..|...|..++.++. +.++++|+.||+|+||+........ |..... ++-+. .+..+.++...+.+. .
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-------~s~rS~--ltys~-~~sr~~~vt~~~~~~-~ 1112 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-------GSARSE--LTYSP-EGSRVEKVTMCGNGD-Q 1112 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-------ceeeee--EEEec-cCCceEEEEeccCCC-e
Confidence 4445556777777765 4999999999999999998732221 011111 11121 222377788877775 6
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCc-EEEEEeCCCcEEEEECCCCCcC-c
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTS-RLIASDTHGVVNIWDRRVGVLP-S 248 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~-~ 248 (489)
++.++.| |.|++.++....... ......+ ...+......|..-+|....+. .++.+..-+.|..||+++.... .
T Consensus 1113 ~Av~t~D-G~v~~~~id~~~~~~-~~~~~~r--i~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1113 FAVSTKD-GSVRVLRIDHYNVSK-RVATQVR--IPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred EEEEcCC-CeEEEEEcccccccc-ceeeeee--cccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 6666777 999999996532221 1111111 1111111223333344444443 7888888899999999986432 2
Q ss_pred eeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeec
Q 037120 249 LELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVS 328 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~ 328 (489)
++.. ...+.|++++.+|.+..+++|+..|.+-+||+|-+..+..+.... ..+++.+..+|-...
T Consensus 1189 lk~~-~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~---~~~i~~v~~~~~~~~------------ 1252 (1431)
T KOG1240|consen 1189 LKNQ-LRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPA---RAPIRHVWLCPTYPQ------------ 1252 (1431)
T ss_pred hhcC-ccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcc---cCCcceEEeeccCCC------------
Confidence 2222 234789999999999999999999999999999877666655211 144777777664321
Q ss_pred cceeEEEeCCCCCeEEEEEe-cCCceEEEEeeccceeeecCCC---C--CCcCCCC-ccccccCCCcceeecCCcEEEEe
Q 037120 329 QEIHSIDLDPSCSYQLAFHL-DDGWSGVLDVYNSRVSHVHCPP---P--AWLSDSN-NSADQLHLRKPSWLSTNSIYAVG 401 (489)
Q Consensus 329 ~~i~~~~~~p~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~---~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~s 401 (489)
....+..+. ..+-...+++.+|+...+.... + .+....+ ..-...-....+-.++++.++++
T Consensus 1253 -----------~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~lt 1321 (1431)
T KOG1240|consen 1253 -----------ESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLT 1321 (1431)
T ss_pred -----------CceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeee
Confidence 011111111 1111112333333222221110 0 0000000 00000111223344566889999
Q ss_pred ecCCCcEEEEeccCCCCCC---e-----e-----------eccCcccchhh-Hh-----h-----h----hcccCCcccC
Q 037120 402 SSSDHGIHLLDFFPGSSSP---S-----H-----------VDYNEDIESLS-ER-----T-----K----LKKENRFVPL 447 (489)
Q Consensus 402 gs~d~~i~vwd~~~~~~~~---~-----~-----------~~~~~~~~~~~-~~-----~-----~----~~~~~~~~~h 447 (489)
|+.|..||.||........ + . ++..+.+++.. .. . . ......-..|
T Consensus 1322 ggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H 1401 (1431)
T KOG1240|consen 1322 GGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYH 1401 (1431)
T ss_pred cCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccc
Confidence 9999999999987653220 0 0 00011111100 00 0 0 0011123579
Q ss_pred CCceEEEEeeCCC-CeEEeccCcceeEEE
Q 037120 448 SEGVTACVTHPLN-NTIVAGTKNSSLLVV 475 (489)
Q Consensus 448 ~~~V~~va~~p~~-~~i~sgs~dg~i~v~ 475 (489)
.++|+++++.... ..|++++.||.|.||
T Consensus 1402 ~d~Itdma~~~~~q~llvs~s~dG~IkiW 1430 (1431)
T KOG1240|consen 1402 HDPITDMATLKSEQPLLVSSSRDGVIKIW 1430 (1431)
T ss_pred cchhhhhhhhccCccEEEEecCCCeeeec
Confidence 9999999998655 599999999999998
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.8e-15 Score=137.40 Aligned_cols=185 Identities=16% Similarity=0.225 Sum_probs=134.5
Q ss_pred CceeEEEECCCCc-EEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 97 PGISALDFDCKGI-YLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 97 ~~V~~~~fs~~g~-~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
-.|.+.+|.|+|. .+++++.-..+++||+.+.+..... .+.++.. ..+.....+|+++ +|+..+
T Consensus 258 fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~------------~~~g~e~--~~~e~FeVShd~~-fia~~G 322 (514)
T KOG2055|consen 258 FPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK------------PPYGVEE--KSMERFEVSHDSN-FIAIAG 322 (514)
T ss_pred CccceeeecCCCceEEEecccceEEEEeecccccccccc------------CCCCccc--chhheeEecCCCC-eEEEcc
Confidence 4589999999998 9999999999999999885544321 1122221 1166688899987 666667
Q ss_pred cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCC
Q 037120 176 TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGS 255 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h 255 (489)
.. |.|.+-...+. ..+...+ -.+.|.+++|+.+++ .|++++.+|.|.+||+++.. |+..+..
T Consensus 323 ~~-G~I~lLhakT~-----eli~s~K--------ieG~v~~~~fsSdsk-~l~~~~~~GeV~v~nl~~~~--~~~rf~D- 384 (514)
T KOG2055|consen 323 NN-GHIHLLHAKTK-----ELITSFK--------IEGVVSDFTFSSDSK-ELLASGGTGEVYVWNLRQNS--CLHRFVD- 384 (514)
T ss_pred cC-ceEEeehhhhh-----hhhheee--------eccEEeeEEEecCCc-EEEEEcCCceEEEEecCCcc--eEEEEee-
Confidence 66 99999887322 2222222 234899999999998 88888889999999999876 6666542
Q ss_pred CCce--eEEEEeecCCEEEEEeCCCeEEEEEcCC------CcccceeecCCccCCCCeeEEEeCCCCccee
Q 037120 256 HGTL--NSIQLHAENQIIFAAGKHGSIYLWDLRG------GRTSAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 256 ~~~v--~~~~~~p~~~~l~~~~~dg~i~lwd~~~------~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
.+.| ++++.++++.++++|+..|.|.|||..+ .+.+..+...... |++++|++|.+.++
T Consensus 385 ~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~----Itsl~Fn~d~qiLA 451 (514)
T KOG2055|consen 385 DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTA----ITSLQFNHDAQILA 451 (514)
T ss_pred cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhhee----eeeeeeCcchhhhh
Confidence 2333 5788889999999999999999999654 2335555544545 88888888887765
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-15 Score=131.38 Aligned_cols=199 Identities=14% Similarity=0.133 Sum_probs=145.2
Q ss_pred eeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccce
Q 037120 214 LSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAP 293 (489)
Q Consensus 214 v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~ 293 (489)
..++.|++-|. +|+.|..||.|.|||+.+.. .-+.+.+|..+|+|++|+++|+.|++++.|..|.+||+..|.+++.
T Consensus 26 a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~--iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~r 102 (405)
T KOG1273|consen 26 AECCQFSRWGD-YLAVGCANGRVVIYDFDTFR--IARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKR 102 (405)
T ss_pred cceEEeccCcc-eeeeeccCCcEEEEEccccc--hhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeE
Confidence 78899999999 99999999999999999876 6667889999999999999999999999999999999999998888
Q ss_pred eecCCccCCCCeeEEEeCCCCcc--eeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCC
Q 037120 294 FHNHKEVCHLPLTSLKLASMLEK--IGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPP 371 (489)
Q Consensus 294 ~~~~~~~~~~~v~~l~~~~~~~~--i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 371 (489)
+.- . .||+...|+|.... +++.- ...-.-+.|++.-..++....++.- +....+ .
T Consensus 103 irf-~----spv~~~q~hp~k~n~~va~~~------~~sp~vi~~s~~~h~~Lp~d~d~dl----n~sas~--------~ 159 (405)
T KOG1273|consen 103 IRF-D----SPVWGAQWHPRKRNKCVATIM------EESPVVIDFSDPKHSVLPKDDDGDL----NSSASH--------G 159 (405)
T ss_pred EEc-c----CccceeeeccccCCeEEEEEe------cCCcEEEEecCCceeeccCCCcccc----cccccc--------c
Confidence 764 3 35999999996633 23211 1112233444311111111111100 000000 0
Q ss_pred CCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccC-CCc
Q 037120 372 AWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPL-SEG 450 (489)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~ 450 (489)
.|... +.|+++|...|.+.|+|..+. +.+..+. -. ...
T Consensus 160 ~fdr~-------------------g~yIitGtsKGkllv~~a~t~----------e~vas~r------------its~~~ 198 (405)
T KOG1273|consen 160 VFDRR-------------------GKYIITGTSKGKLLVYDAETL----------ECVASFR------------ITSVQA 198 (405)
T ss_pred cccCC-------------------CCEEEEecCcceEEEEecchh----------eeeeeee------------echhee
Confidence 11111 889999999999999999988 6665554 22 256
Q ss_pred eEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 451 VTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 451 V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
|..+-++-.+..|+.-+.|..|++|..+.
T Consensus 199 IK~I~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 199 IKQIIVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred eeEEEEeccCcEEEEecCCceEEEEehhh
Confidence 88899999999999999999999998763
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.2e-15 Score=130.96 Aligned_cols=189 Identities=17% Similarity=0.274 Sum_probs=136.2
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccC--CCCCCceeEEEeeCCCCCEEEEEec
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLH--IPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h--~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
--+++|+|||..|.+|- ...|+|||+...-+.. +......| .+...-|.+++|+|.....++.++.
T Consensus 161 AhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c-----------~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY 228 (406)
T KOG2919|consen 161 AHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDC-----------PVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSY 228 (406)
T ss_pred heeEEecCCCCeEeecc-cceEEEeeccCCCCCC-----------cchhhhhcccccccceeeeeeccCCCCcceeeecc
Confidence 56899999999999875 5689999995421111 10000011 1111228999999998889999998
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCcCceeeccCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THGVVNIWDRRVGVLPSLELSTGS 255 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~h 255 (489)
- ..+-||.-... . ....+.+|.+.|+.++|+++|+ .|++|+ .|-.|..||+|....++. .+..|
T Consensus 229 ~-q~~giy~~~~~--~----------pl~llggh~gGvThL~~~edGn-~lfsGaRk~dkIl~WDiR~~~~pv~-~L~rh 293 (406)
T KOG2919|consen 229 G-QRVGIYNDDGR--R----------PLQLLGGHGGGVTHLQWCEDGN-KLFSGARKDDKILCWDIRYSRDPVY-ALERH 293 (406)
T ss_pred c-ceeeeEecCCC--C----------ceeeecccCCCeeeEEeccCcC-eecccccCCCeEEEEeehhccchhh-hhhhh
Confidence 7 78888876211 1 2223478999999999999999 888888 678899999998766644 33344
Q ss_pred CC-cee--EEEEeecCCEEEEEeCCCeEEEEEcCC-CcccceeecCCccCCCCeeEEEeCCCCccee
Q 037120 256 HG-TLN--SIQLHAENQIIFAAGKHGSIYLWDLRG-GRTSAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 256 ~~-~v~--~~~~~p~~~~l~~~~~dg~i~lwd~~~-~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
.+ .-. -....|++++|++|+.||.|++||+.+ +..+..+..+... ++.++++|--..++
T Consensus 294 v~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~----vNgvslnP~mpila 356 (406)
T KOG2919|consen 294 VGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDT----VNGVSLNPIMPILA 356 (406)
T ss_pred ccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccccc----ccceecCcccceee
Confidence 43 222 345568999999999999999999998 6657777777777 88898888754444
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.8e-14 Score=138.66 Aligned_cols=249 Identities=18% Similarity=0.304 Sum_probs=176.1
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcc-cccCCCCCCCCCcccccccccCCCCCCceeEEEe-eCCCCC
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLY-YQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRW-NLANQD 169 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~-~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~-~~~~~~ 169 (489)
...+...|.++.|.+.+..++.++.|+.+.+|+..... .... + ..+.. ..+..+.+ ++++..
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--------~------~~~~~--~~~~~~~~~~~~~~~ 124 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKS--------L------EGLHD--SSVSKLALSSPDGNS 124 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEE--------E------eccCC--CceeeEEEECCCcce
Confidence 44566779999999999999999999999999998853 1111 1 11111 11566666 677653
Q ss_pred EEEEEec-CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeC-CCcEEEEECCCCCcC
Q 037120 170 EVACAST-RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT-HGVVNIWDRRVGVLP 247 (489)
Q Consensus 170 ~l~s~~~-d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~ 247 (489)
.++..+. | +.+.+||+... . .....+..|...|..++|+|++. .+++++. |+.+++|++..+.
T Consensus 125 ~~~~~~~~d-~~~~~~~~~~~-------~----~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-- 189 (466)
T COG2319 125 ILLASSSLD-GTVKLWDLSTP-------G----KLIRTLEGHSESVTSLAFSPDGK-LLASGSSLDGTIKLWDLRTGK-- 189 (466)
T ss_pred EEeccCCCC-ccEEEEEecCC-------C----eEEEEEecCcccEEEEEECCCCC-EEEecCCCCCceEEEEcCCCc--
Confidence 4555444 5 99999999330 1 11122377889999999999999 8888885 9999999999854
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEE-eCCCeEEEEEcCCCcccc-eeecCCccCCCCeeEEEeCCCCcceeeccccce
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAA-GKHGSIYLWDLRGGRTSA-PFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSK 325 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~-~~dg~i~lwd~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~ 325 (489)
.+..+..|...|.+++|+|++..++++ +.|+.|++||...+..+. .+..|... . -.
T Consensus 190 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~----~-~~----------------- 247 (466)
T COG2319 190 PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS----V-VS----------------- 247 (466)
T ss_pred eEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc----e-eE-----------------
Confidence 555666799999999999999844555 779999999887554433 23333211 0 00
Q ss_pred eeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCC
Q 037120 326 IVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSD 405 (489)
Q Consensus 326 ~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d 405 (489)
.|+|+ +.++++++.|
T Consensus 248 ---------~~~~~--------------------------------------------------------~~~~~~~~~d 262 (466)
T COG2319 248 ---------SFSPD--------------------------------------------------------GSLLASGSSD 262 (466)
T ss_pred ---------eECCC--------------------------------------------------------CCEEEEecCC
Confidence 11111 2355578899
Q ss_pred CcEEEEeccCCCCCCeeeccCcc-cchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccc
Q 037120 406 HGIHLLDFFPGSSSPSHVDYNED-IESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 406 ~~i~vwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
+.+++||+... .. +..+. +|...|.+++|+|++..+++++.|+.+.+|..+..
T Consensus 263 ~~~~~~~~~~~----------~~~~~~~~------------~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 316 (466)
T COG2319 263 GTIRLWDLRSS----------SSLLRTLS------------GHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETG 316 (466)
T ss_pred CcEEEeeecCC----------CcEEEEEe------------cCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCC
Confidence 99999999877 22 22223 78999999999998888888999999999944433
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-15 Score=135.12 Aligned_cols=185 Identities=13% Similarity=0.147 Sum_probs=132.4
Q ss_pred eEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCC
Q 037120 100 SALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSN 179 (489)
Q Consensus 100 ~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g 179 (489)
.+++|+.+|..|++|+.||++|||++........ ...|..+ |.++.|+||++ +|++-+.|
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~--------------e~~~~~e---V~DL~FS~dgk-~lasig~d-- 207 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILE--------------EIAHHAE---VKDLDFSPDGK-FLASIGAD-- 207 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhh--------------hHhhcCc---cccceeCCCCc-EEEEecCC--
Confidence 7899999999999999999999999887444332 2456666 88899999997 66666644
Q ss_pred EEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCC---Cc-EEEEEeCCCcEEEEECCCCCc----Cceee
Q 037120 180 VVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVN---TS-RLIASDTHGVVNIWDRRVGVL----PSLEL 251 (489)
Q Consensus 180 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~-~l~s~s~dg~i~iwd~~~~~~----~~~~~ 251 (489)
..+||+++.+..- ....+ .+-......+.|..++ .. +++....-+.|+.||+...+. +..+.
T Consensus 208 ~~~VW~~~~g~~~--a~~t~--------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~ 277 (398)
T KOG0771|consen 208 SARVWSVNTGAAL--ARKTP--------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKK 277 (398)
T ss_pred ceEEEEeccCchh--hhcCC--------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhh
Confidence 9999999655211 11111 1122355667787766 31 222333556777777665433 11111
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceee-cCCccCCCCeeEEEeCCCCcceee
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH-NHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~-~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
. .....|++++.+++|++++.|+.||.|-|++..+.+.++.++ .|... |+.|.|+||.+++++
T Consensus 278 ~-~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~----VT~ltF~Pdsr~~~s 341 (398)
T KOG0771|consen 278 I-KRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGF----VTGLTFSPDSRYLAS 341 (398)
T ss_pred h-hccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheee----eeeEEEcCCcCcccc
Confidence 1 223579999999999999999999999999999988866554 77777 999999999888875
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.8e-16 Score=152.08 Aligned_cols=277 Identities=16% Similarity=0.186 Sum_probs=179.9
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|.+.|.|..|+..|.++++|+.|..|+||..++..+... +.||... |+.++.+..+. ++
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs--------------~rGhs~d---itdlavs~~n~-~i 247 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLAS--------------CRGHSGD---ITDLAVSSNNT-MI 247 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhcc--------------CCCCccc---cchhccchhhh-hh
Confidence 566788899999999999999999999999999988666652 3677777 88899887763 78
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC----
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP---- 247 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---- 247 (489)
++++.| ..|++|-+..+ .+ .. .+.+|++.|++|+|+|-- +.+.||++++||.+-....
T Consensus 248 aaaS~D-~vIrvWrl~~~--~p------vs----vLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~pr 309 (1113)
T KOG0644|consen 248 AAASND-KVIRVWRLPDG--AP------VS----VLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPR 309 (1113)
T ss_pred hhcccC-ceEEEEecCCC--ch------HH----HHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCC
Confidence 888888 99999999433 11 22 238899999999999854 6789999999999821100
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce-eecccccee
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI-GTLKAQSKI 326 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i-~~~~~~~~~ 326 (489)
..+. ....-+.++.|..++.-+++++.|+.-+.|.+..... +... +.-+.++.+...+ .+..
T Consensus 310 p~~~--~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~----lif~t~ssd~~~~~~~ar----- 372 (1113)
T KOG0644|consen 310 PLKF--TEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAW------RSNL----LIFVTRSSDLSSIVVTAR----- 372 (1113)
T ss_pred CCCc--ccccceeeeeccccccccccccCCcccccchhhHhhh------hccc----eEEEeccccccccceeee-----
Confidence 1111 1235567888888888899999999988887664221 1111 1112222222211 1100
Q ss_pred eccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCC
Q 037120 327 VSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDH 406 (489)
Q Consensus 327 ~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~ 406 (489)
..+.. .+++.+.|...+.... . .+.. -.+.++|-+..+..+++.||
T Consensus 373 --~~~~~--------------------~vwnl~~g~l~H~l~g---h-sd~~--------yvLd~Hpfn~ri~msag~dg 418 (1113)
T KOG0644|consen 373 --NDHRL--------------------CVWNLYTGQLLHNLMG---H-SDEV--------YVLDVHPFNPRIAMSAGYDG 418 (1113)
T ss_pred --eeeEe--------------------eeeecccchhhhhhcc---c-ccce--------eeeeecCCCcHhhhhccCCC
Confidence 00000 1222333222111100 0 0000 00123344477888999999
Q ss_pred cEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 407 GIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 407 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
...|||+-.+ ..++... .+| ..+...+|+++|..|+....-|.+.++..
T Consensus 419 st~iwdi~eg----------~pik~y~-----------~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 419 STIIWDIWEG----------IPIKHYF-----------IGH-GKLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred ceEeeecccC----------Ccceeee-----------ccc-ceeeccccCCCCceEecCCCCCceEEecc
Confidence 9999999887 2222211 254 56778899999999999999999999743
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-13 Score=129.52 Aligned_cols=285 Identities=8% Similarity=0.045 Sum_probs=153.8
Q ss_pred EEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCC
Q 037120 111 LVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYIS 190 (489)
Q Consensus 111 la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~ 190 (489)
+++...++.|.+|++.+..... .... ..+... ...++++|+++.+++++..+ +.|.+|++.. .
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~---------~~~~---~~~~~~---~~~l~~spd~~~lyv~~~~~-~~i~~~~~~~-~ 67 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALT---------LLQV---VDVPGQ---VQPMVISPDKRHLYVGVRPE-FRVLSYRIAD-D 67 (330)
T ss_pred EEEcCCCCCEEEEEECCCCcee---------eeeE---EecCCC---CccEEECCCCCEEEEEECCC-CcEEEEEECC-C
Confidence 3444668999999996421110 0000 001122 55589999987555555545 8999999942 1
Q ss_pred CCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCcC--ceeeccCCCCceeEEEEeec
Q 037120 191 DEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THGVVNIWDRRVGVLP--SLELSTGSHGTLNSIQLHAE 267 (489)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~--~~~~~~~h~~~v~~~~~~p~ 267 (489)
. .+...... ........++|+|+++ .+++++ .++.|.+||+.+.... .+... .+.....+++++|+
T Consensus 68 g----~l~~~~~~-----~~~~~p~~i~~~~~g~-~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~ 136 (330)
T PRK11028 68 G----ALTFAAES-----PLPGSPTHISTDHQGR-FLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPD 136 (330)
T ss_pred C----ceEEeeee-----cCCCCceEEEECCCCC-EEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCC
Confidence 1 11111111 1122456899999999 666655 5899999999743211 22222 22344677899999
Q ss_pred CCEEEEEeC-CCeEEEEEcCCCcccce-----eecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCC
Q 037120 268 NQIIFAAGK-HGSIYLWDLRGGRTSAP-----FHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCS 341 (489)
Q Consensus 268 ~~~l~~~~~-dg~i~lwd~~~~~~~~~-----~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~ 341 (489)
++++++++. ++.|.+||+.+...+.. .....+ .....+.|+| +++
T Consensus 137 g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g---~~p~~~~~~p--------------------------dg~ 187 (330)
T PRK11028 137 NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG---AGPRHMVFHP--------------------------NQQ 187 (330)
T ss_pred CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC---CCCceEEECC--------------------------CCC
Confidence 999987776 79999999987332211 010000 0123444444 444
Q ss_pred eEEEEEecCCceEEEEeec--cceee---ecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCC
Q 037120 342 YQLAFHLDDGWSGVLDVYN--SRVSH---VHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPG 416 (489)
Q Consensus 342 ~~~~~~~~~~w~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~ 416 (489)
++++....++...++++.. +.... +...+...... .....+.++|++..++++...++.|.+|++...
T Consensus 188 ~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~-------~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 188 YAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDT-------RWAADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred EEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCC-------ccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 4444433222112222221 11100 00010000000 001124566777766666667889999999654
Q ss_pred CCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccC-cceeEEEecc
Q 037120 417 SSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTK-NSSLLVVSQK 478 (489)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~-dg~i~v~~~~ 478 (489)
.....+. ... .-......++++|++++|+++.. +++|.||...
T Consensus 261 ----------~~~~~~~--~~~-------~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 261 ----------GSVLSFE--GHQ-------PTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred ----------CCeEEEe--EEE-------eccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 2111111 000 00123457899999998877665 8999999764
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-14 Score=134.10 Aligned_cols=245 Identities=14% Similarity=0.204 Sum_probs=160.6
Q ss_pred ccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcE
Q 037120 147 KHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSR 226 (489)
Q Consensus 147 ~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 226 (489)
.+.||++. |.++...|.+. .|++|+.| |+|+||.+.++ ..+.... +. ..|.+|+|+|.+...
T Consensus 395 vyrGHtg~---Vr~iSvdp~G~-wlasGsdD-GtvriWEi~Tg-----Rcvr~~~-----~d---~~I~~vaw~P~~~~~ 456 (733)
T KOG0650|consen 395 VYRGHTGL---VRSISVDPSGE-WLASGSDD-GTVRIWEIATG-----RCVRTVQ-----FD---SEIRSVAWNPLSDLC 456 (733)
T ss_pred eEeccCCe---EEEEEecCCcc-eeeecCCC-CcEEEEEeecc-----eEEEEEe-----ec---ceeEEEEecCCCCce
Confidence 34678888 99999999875 88999988 99999999443 3332222 23 389999999998866
Q ss_pred EEEEeCCCcEEEEECCCCC------------------cC-----------------ceeeccCCCCceeEEEEeecCCEE
Q 037120 227 LIASDTHGVVNIWDRRVGV------------------LP-----------------SLELSTGSHGTLNSIQLHAENQII 271 (489)
Q Consensus 227 l~s~s~dg~i~iwd~~~~~------------------~~-----------------~~~~~~~h~~~v~~~~~~p~~~~l 271 (489)
++++..+..+.|-+..-|. .+ -+.....|...|..+.|+..|.||
T Consensus 457 vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYl 536 (733)
T KOG0650|consen 457 VLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYL 536 (733)
T ss_pred eEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceE
Confidence 6666656556655432220 00 011222567789999999999999
Q ss_pred EEEeC---CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEe
Q 037120 272 FAAGK---HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHL 348 (489)
Q Consensus 272 ~~~~~---dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~ 348 (489)
++... ...|.|.++...+....|....+. |.++.|+|. ..++++++.
T Consensus 537 atV~~~~~~~~VliHQLSK~~sQ~PF~kskG~----vq~v~FHPs--------------------------~p~lfVaTq 586 (733)
T KOG0650|consen 537 ATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGL----VQRVKFHPS--------------------------KPYLFVATQ 586 (733)
T ss_pred EEeccCCCcceEEEEecccccccCchhhcCCc----eeEEEecCC--------------------------CceEEEEec
Confidence 98865 457888898877666555444444 666666554 444444443
Q ss_pred cCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcc
Q 037120 349 DDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNED 428 (489)
Q Consensus 349 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~ 428 (489)
.. .++.++......+..-...-|... ++-+|.|.. ++.|+.|+.+..+|+.-.. +.
T Consensus 587 ~~--vRiYdL~kqelvKkL~tg~kwiS~------------msihp~GDn-li~gs~d~k~~WfDldlss---------kP 642 (733)
T KOG0650|consen 587 RS--VRIYDLSKQELVKKLLTGSKWISS------------MSIHPNGDN-LILGSYDKKMCWFDLDLSS---------KP 642 (733)
T ss_pred cc--eEEEehhHHHHHHHHhcCCeeeee------------eeecCCCCe-EEEecCCCeeEEEEcccCc---------ch
Confidence 22 123333333322221111112111 233344444 5556899999999997551 34
Q ss_pred cchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEE
Q 037120 429 IESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVV 475 (489)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~ 475 (489)
.+.+. -|...|++|+||+..+.+|+|+.||++.||
T Consensus 643 yk~lr------------~H~~avr~Va~H~ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 643 YKTLR------------LHEKAVRSVAFHKRYPLFASGSDDGTVIVF 677 (733)
T ss_pred hHHhh------------hhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence 45555 799999999999999999999999999996
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1e-13 Score=135.81 Aligned_cols=311 Identities=10% Similarity=0.079 Sum_probs=188.1
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
++|.+++|.++++|+|..||.|.||.--.... .......+.=|..+ |.+++|+++|. .|.+|+..
T Consensus 208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~----------~~~t~t~lHWH~~~---V~~L~fS~~G~-~LlSGG~E- 272 (792)
T KOG1963|consen 208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSD----------DSETCTLLHWHHDE---VNSLSFSSDGA-YLLSGGRE- 272 (792)
T ss_pred ceeEEeccccceEEEeccCCcEEEEecccccc----------ccccceEEEecccc---cceeEEecCCc-eEeecccc-
Confidence 89999999999999999999999996433100 01111111115556 99999999997 66677777
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-ceeecc----
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-SLELST---- 253 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~---- 253 (489)
|.+-+|.+.++. +.+...+ ..+|..+.++||+. +.+....|+.|.+....+.... .+..+.
T Consensus 273 ~VLv~Wq~~T~~----------kqfLPRL---gs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~ 338 (792)
T KOG1963|consen 273 GVLVLWQLETGK----------KQFLPRL---GSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTP 338 (792)
T ss_pred eEEEEEeecCCC----------ccccccc---CCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCCc
Confidence 999999995543 1122222 24899999999999 7777888999999876443211 111111
Q ss_pred ----CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCC-----c--cCCCCeeEEEeCCCCcceeeccc
Q 037120 254 ----GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHK-----E--VCHLPLTSLKLASMLEKIGTLKA 322 (489)
Q Consensus 254 ----~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~-----~--~~~~~v~~l~~~~~~~~i~~~~~ 322 (489)
...+-.+.++++|.-+.++-.+..|.|.+||+-+.+.++.+.... + ....++++++.+..|..++++..
T Consensus 339 ~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~ 418 (792)
T KOG1963|consen 339 STKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEA 418 (792)
T ss_pred cccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeee
Confidence 224556788999976777777889999999999877655553111 0 00134677777777777766443
Q ss_pred cceeec--cceeEEE---eCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcE
Q 037120 323 QSKIVS--QEIHSID---LDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSI 397 (489)
Q Consensus 323 ~~~~~~--~~i~~~~---~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (489)
...... .....+. +.++.+. |.-.-.+...|....... ++.... ...
T Consensus 419 ~~d~~~~~~~e~~LKFW~~n~~~kt---------~~L~T~I~~PH~~~~vat--~~~~~~-----------------rs~ 470 (792)
T KOG1963|consen 419 RIDKFNFFDGEVSLKFWQYNPNSKT---------FILNTKINNPHGNAFVAT--IFLNPT-----------------RSV 470 (792)
T ss_pred eehhhhccCceEEEEEEEEcCCcce---------eEEEEEEecCCCceeEEE--EEecCc-----------------ccc
Confidence 321111 1112222 2222111 321222222222111110 122221 133
Q ss_pred EEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 398 YAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 398 ~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
.+++++.||.++||-+... +.+.... ..+.....---|..++++++|+.+|. +++.|.+++|.+|.-
T Consensus 471 ~~vta~~dg~~KiW~~~~~----------~n~~k~~--s~W~c~~i~sy~k~~i~a~~fs~dGs-lla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 471 RCVTASVDGDFKIWVFTDD----------SNIYKKS--SNWTCKAIGSYHKTPITALCFSQDGS-LLAVSFDDTITIWDY 537 (792)
T ss_pred eeEEeccCCeEEEEEEecc----------cccCcCc--cceEEeeeeccccCcccchhhcCCCc-EEEEecCCEEEEecC
Confidence 7899999999999999665 2222211 11100000002678899999999995 667778899999977
Q ss_pred cc
Q 037120 478 KQ 479 (489)
Q Consensus 478 ~~ 479 (489)
.+
T Consensus 538 ~~ 539 (792)
T KOG1963|consen 538 DT 539 (792)
T ss_pred CC
Confidence 66
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.7e-14 Score=120.75 Aligned_cols=125 Identities=12% Similarity=0.189 Sum_probs=91.7
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEec--CCCcEEEEEeCCCc
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSA--VNTSRLIASDTHGV 235 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~l~s~s~dg~ 235 (489)
|.++.|.+.|. .+++++.| ++|+|||.+...+ .......+ ..|.+.|..|.|-+ -|+ .+++++.|++
T Consensus 16 ihdVs~D~~GR-RmAtCSsD-q~vkI~d~~~~s~----~W~~Ts~W----rah~~Si~rV~WAhPEfGq-vvA~cS~Drt 84 (361)
T KOG2445|consen 16 IHDVSFDFYGR-RMATCSSD-QTVKIWDSTSDSG----TWSCTSSW----RAHDGSIWRVVWAHPEFGQ-VVATCSYDRT 84 (361)
T ss_pred eeeeeecccCc-eeeeccCC-CcEEEEeccCCCC----ceEEeeeE----EecCCcEEEEEecCccccc-eEEEEecCCc
Confidence 99999999996 77777777 9999999844322 22222233 66999999999964 356 9999999999
Q ss_pred EEEEECCCC-----C--cCceeeccCCCCceeEEEEeec--CCEEEEEeCCCeEEEEEcCCCcccce
Q 037120 236 VNIWDRRVG-----V--LPSLELSTGSHGTLNSIQLHAE--NQIIFAAGKHGSIYLWDLRGGRTSAP 293 (489)
Q Consensus 236 i~iwd~~~~-----~--~~~~~~~~~h~~~v~~~~~~p~--~~~l~~~~~dg~i~lwd~~~~~~~~~ 293 (489)
+.||.-... . ......+....+.|+.+.|.|. |-.+++++.||++|||+....-.+..
T Consensus 85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~ 151 (361)
T KOG2445|consen 85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQ 151 (361)
T ss_pred eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccccc
Confidence 999975211 1 1122234466789999999994 66788888899999999876443333
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-14 Score=125.61 Aligned_cols=195 Identities=16% Similarity=0.243 Sum_probs=139.1
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecC-CCcEEEEEeCCCcEEEEECCCCCcCc
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAV-NTSRLIASDTHGVVNIWDRRVGVLPS 248 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~ 248 (489)
.++++-.+ |+|++||...+ .. ...+ .+|...++.++|... +.+.+.+|+.||+|++||+|+..+..
T Consensus 42 ~vav~lSn-gsv~lyd~~tg-----~~---l~~f----k~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a 108 (376)
T KOG1188|consen 42 AVAVSLSN-GSVRLYDKGTG-----QL---LEEF----KGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA 108 (376)
T ss_pred eEEEEecC-CeEEEEeccch-----hh---hhee----cCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh
Confidence 45566556 99999999332 22 2223 778888899999875 66689999999999999999875543
Q ss_pred eeeccCCC-CceeEEEEeecCCEEEEEeC----CCeEEEEEcCCCcc-cceee-cCCccCCCCeeEEEeCCCCcceeecc
Q 037120 249 LELSTGSH-GTLNSIQLHAENQIIFAAGK----HGSIYLWDLRGGRT-SAPFH-NHKEVCHLPLTSLKLASMLEKIGTLK 321 (489)
Q Consensus 249 ~~~~~~h~-~~v~~~~~~p~~~~l~~~~~----dg~i~lwd~~~~~~-~~~~~-~~~~~~~~~v~~l~~~~~~~~i~~~~ 321 (489)
.....++. .+..|++.+..++.+.+|.. |-.|.+||+|..+. +..+. .|..- |++|+|+|
T Consensus 109 ~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DD----VT~lrFHP--------- 175 (376)
T KOG1188|consen 109 RISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDD----VTQLRFHP--------- 175 (376)
T ss_pred heeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCc----ceeEEecC---------
Confidence 33444555 57788888888888777754 77899999998765 44433 45444 55555444
Q ss_pred ccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEe
Q 037120 322 AQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVG 401 (489)
Q Consensus 322 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 401 (489)
+. ..+|++
T Consensus 176 -----------------~~-------------------------------------------------------pnlLlS 183 (376)
T KOG1188|consen 176 -----------------SD-------------------------------------------------------PNLLLS 183 (376)
T ss_pred -----------------CC-------------------------------------------------------CCeEEe
Confidence 22 557889
Q ss_pred ecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCC-CeEEeccCcceeEEEecccc
Q 037120 402 SSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLN-NTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 402 gs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~-~~i~sgs~dg~i~v~~~~~~ 480 (489)
||.||-|.|+|+.... +.+.++..+ .|...|..+.|+..+ +.|.+-+..++..+|--+..
T Consensus 184 GSvDGLvnlfD~~~d~------EeDaL~~vi-------------N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 184 GSVDGLVNLFDTKKDN------EEDALLHVI-------------NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred ecccceEEeeecCCCc------chhhHHHhh-------------cccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence 9999999999998661 000122222 588889999999877 46777888899999876665
Q ss_pred c
Q 037120 481 C 481 (489)
Q Consensus 481 ~ 481 (489)
+
T Consensus 245 ~ 245 (376)
T KOG1188|consen 245 S 245 (376)
T ss_pred C
Confidence 5
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.5e-16 Score=149.23 Aligned_cols=242 Identities=17% Similarity=0.248 Sum_probs=161.0
Q ss_pred cccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCC
Q 037120 144 DQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVN 223 (489)
Q Consensus 144 ~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 223 (489)
.+..+.+|... |.|+.|...+. .+++|++| ..|+||.+... .+.....||...|+.++.+..+
T Consensus 182 ~ikrLlgH~na---Vyca~fDrtg~-~Iitgsdd-~lvKiwS~et~------------~~lAs~rGhs~ditdlavs~~n 244 (1113)
T KOG0644|consen 182 NIKRLLGHRNA---VYCAIFDRTGR-YIITGSDD-RLVKIWSMETA------------RCLASCRGHSGDITDLAVSSNN 244 (1113)
T ss_pred HHHHHHhhhhh---eeeeeeccccc-eEeecCcc-ceeeeeeccch------------hhhccCCCCccccchhccchhh
Confidence 34445678888 99999999885 78888887 99999997321 1233448999999999998877
Q ss_pred CcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCC
Q 037120 224 TSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHL 303 (489)
Q Consensus 224 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~ 303 (489)
. ++++++.|..|++|-+..+. .+..+.+|++.|++++|+|-. +.+.||++++||.+-.-.++.-.........
T Consensus 245 ~-~iaaaS~D~vIrvWrl~~~~--pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~ 317 (1113)
T KOG0644|consen 245 T-MIAAASNDKVIRVWRLPDGA--PVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKD 317 (1113)
T ss_pred h-hhhhcccCceEEEEecCCCc--hHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCccccc
Confidence 7 99999999999999999877 666788999999999999965 6677999999999821111110000000001
Q ss_pred CeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCce-EEEEeeccceeeecCCCCCCcCCCCcccc
Q 037120 304 PLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWS-GVLDVYNSRVSHVHCPPPAWLSDSNNSAD 382 (489)
Q Consensus 304 ~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (489)
.+.++.|...+..+.+...........+..++ |. ..+... ....+
T Consensus 318 ~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~----------------~~~~~lif~------------t~ssd------ 363 (1113)
T KOG0644|consen 318 LVDSILFENNGDRFLTGSRDGEARNHEFEQLA----------------WRSNLLIFV------------TRSSD------ 363 (1113)
T ss_pred ceeeeeccccccccccccCCcccccchhhHhh----------------hhccceEEE------------ecccc------
Confidence 13333333333322221111100000000000 10 000000 00001
Q ss_pred ccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCC-
Q 037120 383 QLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN- 461 (489)
Q Consensus 383 ~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~- 461 (489)
-..+.+++-.+..+++|++.++ .++..+. +|.+.+..+.+||.+.
T Consensus 364 ------------~~~~~~~ar~~~~~~vwnl~~g----------~l~H~l~------------ghsd~~yvLd~Hpfn~r 409 (1113)
T KOG0644|consen 364 ------------LSSIVVTARNDHRLCVWNLYTG----------QLLHNLM------------GHSDEVYVLDVHPFNPR 409 (1113)
T ss_pred ------------ccccceeeeeeeEeeeeecccc----------hhhhhhc------------ccccceeeeeecCCCcH
Confidence 1456677778888999999999 8888888 9999999999999997
Q ss_pred eEEeccCcceeEEEec
Q 037120 462 TIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 462 ~i~sgs~dg~i~v~~~ 477 (489)
+..+++.||...||+-
T Consensus 410 i~msag~dgst~iwdi 425 (1113)
T KOG0644|consen 410 IAMSAGYDGSTIIWDI 425 (1113)
T ss_pred hhhhccCCCceEeeec
Confidence 5568899999999864
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-12 Score=128.81 Aligned_cols=288 Identities=17% Similarity=0.254 Sum_probs=191.2
Q ss_pred cccCCCceeEEEECCCCcEEEEEec-CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATR-SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~-dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..+...|.+++|+|++.++++++. |+.+++|+........ .. .+|... |.+++|+|++..+
T Consensus 151 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~------~~~~~~---v~~~~~~~~~~~~ 213 (466)
T COG2319 151 LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLS--------TL------AGHTDP---VSSLAFSPDGGLL 213 (466)
T ss_pred EecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEE--------ee------ccCCCc---eEEEEEcCCcceE
Confidence 5556677999999999999999986 9999999998733322 11 224445 9999999887645
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
+++++.| +.|++||.... ..+.. .+.+|...+ ...|++++. .+++++.|+.+++||++..... +.
T Consensus 214 ~~~~~~d-~~i~~wd~~~~-----~~~~~------~~~~~~~~~-~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~-~~ 278 (466)
T COG2319 214 IASGSSD-GTIRLWDLSTG-----KLLRS------TLSGHSDSV-VSSFSPDGS-LLASGSSDGTIRLWDLRSSSSL-LR 278 (466)
T ss_pred EEEecCC-CcEEEEECCCC-----cEEee------ecCCCCcce-eEeECCCCC-EEEEecCCCcEEEeeecCCCcE-EE
Confidence 5554666 99999987411 11111 236677775 448999996 8889999999999999976542 22
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceee--cCCccCCCCeeEEEeCCCC-cceeeccccceee
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH--NHKEVCHLPLTSLKLASML-EKIGTLKAQSKIV 327 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~--~~~~~~~~~v~~l~~~~~~-~~i~~~~~~~~~~ 327 (489)
....|...+.++.|+|++..+++++.|+.+++||..+........ .|... +..+.| +.. ..+....
T Consensus 279 ~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~------ 347 (466)
T COG2319 279 TLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGP----VSSLSF-SPDGSLLVSGG------ 347 (466)
T ss_pred EEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCc----eEEEEE-CCCCCEEEEee------
Confidence 335788999999999999999998889999999998877655554 55544 777777 422 1221100
Q ss_pred ccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEE-eecCCC
Q 037120 328 SQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAV-GSSSDH 406 (489)
Q Consensus 328 ~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-sgs~d~ 406 (489)
..+ ..+......... .......... .....+.+ . ...+ .+..++
T Consensus 348 ---------~~d-~~~~~~~~~~~~-~~~~~~~~~~----------------------~~~~~~~~-~-~~~~~~~~~~~ 392 (466)
T COG2319 348 ---------SDD-GTIRLWDLRTGK-PLKTLEGHSN----------------------VLSVSFSP-D-GRVVSSGSTDG 392 (466)
T ss_pred ---------cCC-CcEEeeecCCCc-eeEEecCCce----------------------EEEEEECC-C-CCEEEEecCCC
Confidence 011 000001111000 0000000000 11223333 3 2333 378999
Q ss_pred cEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 407 GIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 407 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
.+.+|+.... ....... .+...+....+.+.+..+++++.++.+.+|..+.
T Consensus 393 ~~~~~~~~~~----------~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 393 TVRLWDLSTG----------SLLRNLD------------GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ceEEEecccC----------eeeeecc------------CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 9999999887 5544433 2227899999999999999999999999998776
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.1e-14 Score=119.67 Aligned_cols=194 Identities=16% Similarity=0.157 Sum_probs=138.1
Q ss_pred CCCceeEEEECCCC-----cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCccccccccc--CCCCCCceeEEEeeCCC
Q 037120 95 GKPGISALDFDCKG-----IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLL--HIPLPQQLDAVRWNLAN 167 (489)
Q Consensus 95 ~~~~V~~~~fs~~g-----~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~--h~~~~~~V~~v~~~~~~ 167 (489)
+.=.++.+-|.|+. ++||+.+ -.+|+|.+...+.. ...+..+.. ......++++..|+...
T Consensus 95 ~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~----------~~~~~~L~~~kns~~~aPlTSFDWne~d 162 (364)
T KOG0290|consen 95 HPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESR----------VELQSVLNNNKNSEFCAPLTSFDWNEVD 162 (364)
T ss_pred CCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCc----------eehhhhhccCcccccCCcccccccccCC
Confidence 33458889999985 4666654 36999998752111 111111111 11222349999999998
Q ss_pred CCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC
Q 037120 168 QDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP 247 (489)
Q Consensus 168 ~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 247 (489)
.+++.+++-| -+..|||+..+... ....++..|...|.+|+|...+..+|++++.||.|+++|+|.-+..
T Consensus 163 p~~igtSSiD-TTCTiWdie~~~~~---------~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS 232 (364)
T KOG0290|consen 163 PNLIGTSSID-TTCTIWDIETGVSG---------TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS 232 (364)
T ss_pred cceeEeeccc-CeEEEEEEeecccc---------ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc
Confidence 8899999999 99999999543111 1122346799999999999988889999999999999999986654
Q ss_pred ceeeccCC-CCceeEEEEeecCCEEEEE-eC-CCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCCC
Q 037120 248 SLELSTGS-HGTLNSIQLHAENQIIFAA-GK-HGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASML 314 (489)
Q Consensus 248 ~~~~~~~h-~~~v~~~~~~p~~~~l~~~-~~-dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~ 314 (489)
.+-..... ..+..-++|++....+++. .. ...|.|.|+|.... +..+.+|+.. |+.++|.|..
T Consensus 233 TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~----VNgIaWaPhS 299 (364)
T KOG0290|consen 233 TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQAS----VNGIAWAPHS 299 (364)
T ss_pred eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCccc----ccceEecCCC
Confidence 33222222 5678889999877655544 33 56799999998644 8889999988 9999999865
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-13 Score=120.84 Aligned_cols=147 Identities=22% Similarity=0.347 Sum_probs=109.0
Q ss_pred eeEEEeeC----CCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCC---cEEEEE
Q 037120 158 LDAVRWNL----ANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT---SRLIAS 230 (489)
Q Consensus 158 V~~v~~~~----~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---~~l~s~ 230 (489)
|..++|++ +....+++++ .+.+.+|...... ....++.... ..|......++|+-+-. -+++.+
T Consensus 41 I~gv~fN~~~~~~e~~vfatvG--~~rvtiy~c~~d~--~ir~lq~y~D-----~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 41 IFGVAFNSFLGCDEPQVFATVG--GNRVTIYECPGDG--GIRLLQSYAD-----EDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred cceeeeehhcCCCCCceEEEeC--CcEEEEEEECCcc--ceeeeeeccC-----CCCCcceEEEEEEecCCCCCeeEEee
Confidence 77799984 3445778887 5699999984322 1123322221 45777888899976432 278888
Q ss_pred eCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecC-CEEEEEeCCCeEEEEEcCCCcccceee---cCCccCCCCee
Q 037120 231 DTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAEN-QIIFAAGKHGSIYLWDLRGGRTSAPFH---NHKEVCHLPLT 306 (489)
Q Consensus 231 s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~~~~~dg~i~lwd~~~~~~~~~~~---~~~~~~~~~v~ 306 (489)
+.-|.|+|.|+.+++ +.+.+.+|...|+.+.++|+. +++++++.|..||+|++++..++..|. +|.+. |-
T Consensus 112 G~~GvIrVid~~~~~--~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrde----VL 185 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQ--CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDE----VL 185 (385)
T ss_pred cceeEEEEEecchhh--hccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCc----EE
Confidence 899999999999877 788888999999999999986 467777889999999999999877664 55555 66
Q ss_pred EEEeCCCCcceee
Q 037120 307 SLKLASMLEKIGT 319 (489)
Q Consensus 307 ~l~~~~~~~~i~~ 319 (489)
++.|+++|.+|++
T Consensus 186 SvD~~~~gd~i~S 198 (385)
T KOG1034|consen 186 SVDFSLDGDRIAS 198 (385)
T ss_pred EEEEcCCCCeeec
Confidence 6666666665554
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.8e-13 Score=116.84 Aligned_cols=240 Identities=12% Similarity=0.155 Sum_probs=161.9
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCC-CCCCceeEEEeeCCCCCEEEEEe
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHI-PLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~-~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
..+..+.|+.+...|..|+.|| .++|..+..... +|. .++..|.-+-|+.. +++..+
T Consensus 6 ~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~------------------~~~~~~~~~IvEmLFSSS---LvaiV~ 63 (391)
T KOG2110|consen 6 PTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKC------------------FSKDTEGVSIVEMLFSSS---LVAIVS 63 (391)
T ss_pred cceeeeeeccceeEEEccCCCc-eeEEecCchHHh------------------hcccCCCeEEEEeecccc---eeEEEe
Confidence 3477778999999999999998 577877662211 111 11222555666654 444433
Q ss_pred -cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-ceeecc
Q 037120 176 -TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-SLELST 253 (489)
Q Consensus 176 -~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~ 253 (489)
.+.+.+++++.... ..+-... -...|.++.++.+ .|+.+=.+ .|+|||++..+.. .+....
T Consensus 64 ~~qpr~Lkv~~~Kk~-----~~ICe~~--------fpt~IL~VrmNr~---RLvV~Lee-~IyIydI~~MklLhTI~t~~ 126 (391)
T KOG2110|consen 64 IKQPRKLKVVHFKKK-----TTICEIF--------FPTSILAVRMNRK---RLVVCLEE-SIYIYDIKDMKLLHTIETTP 126 (391)
T ss_pred cCCCceEEEEEcccC-----ceEEEEe--------cCCceEEEEEccc---eEEEEEcc-cEEEEecccceeehhhhccC
Confidence 33356888888321 2222111 1237889988753 56666644 4999999987622 222222
Q ss_pred CCCCceeEEEEeecCCEEEEEeC--CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGK--HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~--dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
.+...+.++++++.+.+++.-+. .|.|.|||+.+.+.+..+..|.+. +.+++|+++|.+
T Consensus 127 ~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~----lAalafs~~G~l--------------- 187 (391)
T KOG2110|consen 127 PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGP----LAALAFSPDGTL--------------- 187 (391)
T ss_pred CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCc----eeEEEECCCCCE---------------
Confidence 45566777777777778877655 899999999999999999999977 888887776544
Q ss_pred eEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCC-cEEE
Q 037120 332 HSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDH-GIHL 410 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~-~i~v 410 (489)
++++|+.| .|||
T Consensus 188 -------------------------------------------------------------------lATASeKGTVIRV 200 (391)
T KOG2110|consen 188 -------------------------------------------------------------------LATASEKGTVIRV 200 (391)
T ss_pred -------------------------------------------------------------------EEEeccCceEEEE
Confidence 44455555 4677
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccccc
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQC 481 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~ 481 (489)
+.+..+ +.+.++... -....|.+++|||++.+|++.|..++|.||.-++..
T Consensus 201 f~v~~G----------~kl~eFRRG----------~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 201 FSVPEG----------QKLYEFRRG----------TYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEcCCc----------cEeeeeeCC----------ceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 777777 555554310 123468999999999999999999999999877665
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.3e-13 Score=131.96 Aligned_cols=241 Identities=16% Similarity=0.166 Sum_probs=149.2
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC---ce-eeccC
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP---SL-ELSTG 254 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~-~~~~~ 254 (489)
+.+.||++... ..|...+.. ...|.+++|+|..+++++.|..+|+|.+||++.+... .+ .....
T Consensus 222 ~~~~vW~~~~p-~~Pe~~~~~-----------~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~s 289 (555)
T KOG1587|consen 222 GVLLVWSLKNP-NTPELVLES-----------PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVS 289 (555)
T ss_pred ceEEEEecCCC-CCceEEEec-----------CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCccccccccc
Confidence 57999999544 333222222 3489999999999989999999999999999987652 11 12337
Q ss_pred CCCceeEEEEeecCCE--EEEEeCCCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 255 SHGTLNSIQLHAENQI--IFAAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~--l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
|..++..+.|..+-.. +++++.||.|..|+++.... ...+...... + ..........+
T Consensus 290 h~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~----------~---------~~~~~~~~~~~ 350 (555)
T KOG1587|consen 290 HSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKK----------H---------KGQQSSKAVGA 350 (555)
T ss_pred CCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccccc----------c---------cccccccccce
Confidence 8899999999776555 99999999999999887544 1111110000 0 00000112234
Q ss_pred eEEEeCCCCCeEEEEEecCCce--EEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEE
Q 037120 332 HSIDLDPSCSYQLAFHLDDGWS--GVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIH 409 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~w~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~ 409 (489)
+.+.|.+.....+..+.+.+.. ....-+....... +............+..+.+.|-+..++++++ |-+++
T Consensus 351 t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~------~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vr 423 (555)
T KOG1587|consen 351 TSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVS------YKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVR 423 (555)
T ss_pred eeEeeccCCCceEEEEcCCcEEEEEeccCCccccccc------ccccccccccCcceEeeecCCCccceeeeec-cceeE
Confidence 5566666665555555555421 0111110000000 0001001111133455666777777777776 99999
Q ss_pred EEecc-CCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCC-eEEeccCcceeEEEeccc
Q 037120 410 LLDFF-PGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN-TIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 410 vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~-~i~sgs~dg~i~v~~~~~ 479 (489)
||... .. ..+..+. .+.+.|++++|+|..+ .|+++..||.|.+|.--+
T Consensus 424 iWs~~~~~----------~Pl~~~~------------~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~ 473 (555)
T KOG1587|consen 424 IWSEDVIA----------SPLLSLD------------SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ 473 (555)
T ss_pred eccccCCC----------Ccchhhh------------hccceeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence 99876 33 3344444 6777899999999996 889999999999996543
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-13 Score=126.74 Aligned_cols=172 Identities=15% Similarity=0.163 Sum_probs=125.8
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
..+|...|.|-.|+|||.-|++++.||.|++|.-..+-... +...... |.|++|.|++..++
T Consensus 100 v~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRSt---------l~Q~~~~---------v~c~~W~p~S~~vl 161 (737)
T KOG1524|consen 100 ISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRST---------VVQNEES---------IRCARWAPNSNSIV 161 (737)
T ss_pred hhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHH---------HhhcCce---------eEEEEECCCCCceE
Confidence 34566679999999999999999999999999876521111 1111112 99999999998888
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
.+.+ +.+.|=-+.... .. . .+ ..|.+-|.++.|++..+ ++++|++|...++||..- . .+..
T Consensus 162 ~c~g---~h~~IKpL~~n~----k~---i-~W----kAHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~G-~--~Lf~ 222 (737)
T KOG1524|consen 162 FCQG---GHISIKPLAANS----KI---I-RW----RAHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQG-A--NLFT 222 (737)
T ss_pred EecC---CeEEEeeccccc----ce---e-EE----eccCcEEEEeecCcccc-ceeecCCceeEEeecccC-c--cccc
Confidence 8887 566665551110 11 1 12 67999999999999999 999999999999999764 2 3445
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
...|+-+|++++|+|+ ..++.+ +-+++|+=..+ .+. |..++|++||..+
T Consensus 223 S~~~ey~ITSva~npd-~~~~v~-S~nt~R~~~p~-----------~GS----ifnlsWS~DGTQ~ 271 (737)
T KOG1524|consen 223 SAAEEYAITSVAFNPE-KDYLLW-SYNTARFSSPR-----------VGS----IFNLSWSADGTQA 271 (737)
T ss_pred CChhccceeeeeeccc-cceeee-eeeeeeecCCC-----------ccc----eEEEEEcCCCcee
Confidence 6689999999999999 444444 44566633332 233 9999999999766
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.59 E-value=7.1e-14 Score=121.64 Aligned_cols=216 Identities=11% Similarity=0.108 Sum_probs=147.6
Q ss_pred CCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
..+.|+|.+|++|+..+|.+.....|.||....... .+.-..+..|... |+.|+|+|... .|+++
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~-----------w~~~htls~Hd~~---vtgvdWap~sn-rIvtc 73 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL-----------WEPAHTLSEHDKI---VTGVDWAPKSN-RIVTC 73 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCC-----------ceeceehhhhCcc---eeEEeecCCCC-ceeEc
Confidence 346799999999999999999999999998876321 1222222335555 89999999975 77788
Q ss_pred ecCCCEEEEEEec-cCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC--ceee
Q 037120 175 STRSNVVSIYDIG-YISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP--SLEL 251 (489)
Q Consensus 175 ~~d~g~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~ 251 (489)
+.| ..-+||... .+.-++..++ ..|+..++++.|+|..+ .|++|+....|.||-++..+.- ...+
T Consensus 74 s~d-rnayVw~~~~~~~WkptlvL----------lRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhi 141 (361)
T KOG1523|consen 74 SHD-RNAYVWTQPSGGTWKPTLVL----------LRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHI 141 (361)
T ss_pred cCC-CCccccccCCCCeeccceeE----------EEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhh
Confidence 888 899999983 2222222222 44667999999999998 9999999999999988764321 2223
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce--eeccccceeecc
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI--GTLKAQSKIVSQ 329 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i--~~~~~~~~~~~~ 329 (489)
...+.+.|++++|+|++-++++|+.|+..|+|..- ++.+...... .|-|..+ +.+..+......
T Consensus 142 kkPirStv~sldWhpnnVLlaaGs~D~k~rVfSay----IK~Vdekpap----------~pWgsk~PFG~lm~E~~~~gg 207 (361)
T KOG1523|consen 142 KKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAY----IKGVDEKPAP----------TPWGSKMPFGQLMSEASSSGG 207 (361)
T ss_pred CCccccceeeeeccCCcceecccccCcceeEEEEe----eeccccCCCC----------CCCccCCcHHHHHHhhccCCC
Confidence 34778999999999999999999999999999643 1111111110 1222221 222233333445
Q ss_pred ceeEEEeCCCCCeEEEEEecCC
Q 037120 330 EIHSIDLDPSCSYQLAFHLDDG 351 (489)
Q Consensus 330 ~i~~~~~~p~~~~~~~~~~~~~ 351 (489)
.+..+.|+|+|..++....|..
T Consensus 208 wvh~v~fs~sG~~lawv~Hds~ 229 (361)
T KOG1523|consen 208 WVHGVLFSPSGNRLAWVGHDST 229 (361)
T ss_pred ceeeeEeCCCCCEeeEecCCCc
Confidence 6677777777777766555543
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-13 Score=121.67 Aligned_cols=346 Identities=16% Similarity=0.243 Sum_probs=179.7
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCC-EEEEEe
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQD-EVACAS 175 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~-~l~s~~ 175 (489)
.-|.++.|+..|.+||+|..+|.|.+|.-+............+...+++........-...|..+.|.+++.. .++...
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst 105 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST 105 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence 3489999999999999999999999997654221000000000001111111111111223778999877543 333333
Q ss_pred cCCCEEEEEEeccCCCCC------------------ceee---------eeceeeeeecCCcccCeeEEEEecCCCcEEE
Q 037120 176 TRSNVVSIYDIGYISDEP------------------VEVL---------KTRRSVTVVGSDVQKGLSDLAFSAVNTSRLI 228 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~------------------~~~~---------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 228 (489)
. |.+|++|.+.....+. ..++ .+.+.+ -..|+--|++|.++.|.. .++
T Consensus 106 N-dktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~---aNaHtyhiNSIS~NsD~E-t~l 180 (433)
T KOG1354|consen 106 N-DKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVY---ANAHTYHINSISVNSDKE-TFL 180 (433)
T ss_pred C-CcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeec---cccceeEeeeeeecCccc-eEe
Confidence 3 5999999996433222 0011 011111 256899999999999998 777
Q ss_pred EEeCCCcEEEEECCCCCcC-ceeeccCC-----CCceeEEEEeecCCEEEEE-eCCCeEEEEEcCCCcc----cceeecC
Q 037120 229 ASDTHGVVNIWDRRVGVLP-SLELSTGS-----HGTLNSIQLHAENQIIFAA-GKHGSIYLWDLRGGRT----SAPFHNH 297 (489)
Q Consensus 229 s~s~dg~i~iwd~~~~~~~-~~~~~~~h-----~~~v~~~~~~p~~~~l~~~-~~dg~i~lwd~~~~~~----~~~~~~~ 297 (489)
++. |=.|.+|++.-.... .+-..+.+ ..-|++..|+|..-.++.- ++.|+|+|-|+|.... .+.+...
T Consensus 181 SAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep 259 (433)
T KOG1354|consen 181 SAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP 259 (433)
T ss_pred ecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence 766 889999998864332 11122233 2458899999976655554 5599999999996432 1112111
Q ss_pred CccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeec-cc---eeeecCC----
Q 037120 298 KEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYN-SR---VSHVHCP---- 369 (489)
Q Consensus 298 ~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~-~~---~~~~~~~---- 369 (489)
..+ ... ......-..|..+.|+++|+|+++-..-. .+++++.. .. ...+++.
T Consensus 260 edp------------~~r------sffseiIsSISDvKFs~sGryilsRDylt--vk~wD~nme~~pv~t~~vh~~lr~k 319 (433)
T KOG1354|consen 260 EDP------------SSR------SFFSEIISSISDVKFSHSGRYILSRDYLT--VKLWDLNMEAKPVETYPVHEYLRSK 319 (433)
T ss_pred cCC------------cch------hhHHHHhhhhhceEEccCCcEEEEeccce--eEEEeccccCCcceEEeehHhHHHH
Confidence 111 000 00111223456666777777766532211 12333211 00 0111110
Q ss_pred -CCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccC------cccchhhHh---hhhc
Q 037120 370 -PPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYN------EDIESLSER---TKLK 439 (489)
Q Consensus 370 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~------~~~~~~~~~---~~~~ 439 (489)
...+..+. . ...-..+|+-+ +.++++||..+.++++++..+......+... +.+..+... ++..
T Consensus 320 Lc~lYEnD~--I---fdKFec~~sg~-~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~ 393 (433)
T KOG1354|consen 320 LCSLYENDA--I---FDKFECSWSGN-DSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRK 393 (433)
T ss_pred HHHHhhccc--h---hheeEEEEcCC-cceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCcc
Confidence 00000000 0 00112233333 6689999999999999977664322111111 111111100 0000
Q ss_pred ccC---CcccCCCceEEEEeeCCCCeEEeccCcceeEEE
Q 037120 440 KEN---RFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVV 475 (489)
Q Consensus 440 ~~~---~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~ 475 (489)
... .-+.....+...+|||..+.||.+..+. +.+|
T Consensus 394 ~~~~~vd~ldf~kkilh~aWhp~en~ia~aatnn-lyif 431 (433)
T KOG1354|consen 394 RDEISVDALDFRKKILHTAWHPKENSIAVAATNN-LYIF 431 (433)
T ss_pred ccccccchhhhhhHHHhhccCCccceeeeeecCc-eEEe
Confidence 000 0134456788899999999888877643 4444
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.7e-12 Score=126.13 Aligned_cols=190 Identities=14% Similarity=0.169 Sum_probs=135.3
Q ss_pred EECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCC--CEEEEEecCCCE
Q 037120 103 DFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQ--DEVACASTRSNV 180 (489)
Q Consensus 103 ~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~--~~l~s~~~d~g~ 180 (489)
.||+|+++++.... ..|.||...++.+.. .+ ..|+.. ++.+.+.|... ..+.+.+.| |.
T Consensus 23 vfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~--------~l------~~~~a~---l~s~~~~~~~~~~~~~~~~sl~-G~ 83 (792)
T KOG1963|consen 23 VFSNDAKFLFLCTG-NFVKVYSTATGECIT--------SL------EDHTAP---LTSVIVLPSSENANYLIVCSLD-GT 83 (792)
T ss_pred ccccCCcEEEEeeC-CEEEEEecchHhhhh--------hc------ccccCc---cceeeecCCCccceEEEEEecC-cc
Confidence 58999998887764 589999999987776 23 334444 88899988766 355577777 99
Q ss_pred EEEEEeccCCCCC---------------------------------------------------------------c---
Q 037120 181 VSIYDIGYISDEP---------------------------------------------------------------V--- 194 (489)
Q Consensus 181 i~vwd~~~~~~~~---------------------------------------------------------------~--- 194 (489)
|++||.....-.. .
T Consensus 84 I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~ 163 (792)
T KOG1963|consen 84 IRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEP 163 (792)
T ss_pred EEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCC
Confidence 9999875320000 0
Q ss_pred eee------------eece--ee-ee----------ecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCC--CCcC
Q 037120 195 EVL------------KTRR--SV-TV----------VGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRV--GVLP 247 (489)
Q Consensus 195 ~~~------------~~~~--~~-~~----------~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~~ 247 (489)
..+ .... .+ .. .-..|+..+++.+++|.+. +++++..||.|.+|.--. ....
T Consensus 164 ~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~-~~Aa~d~dGrI~vw~d~~~~~~~~ 242 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNER-YLAAGDSDGRILVWRDFGSSDDSE 242 (792)
T ss_pred ccEEEcCCceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccc-eEEEeccCCcEEEEeccccccccc
Confidence 000 0000 00 00 0023666788999999999 999999999999995332 2222
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
..+.+.-|...|++++|+++|.+|++||..|.+-+|.+.+++ .+-++.-. .||..+.++||+...
T Consensus 243 t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLg----s~I~~i~vS~ds~~~ 307 (792)
T KOG1963|consen 243 TCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLG----SPILHIVVSPDSDLY 307 (792)
T ss_pred cceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccC----CeeEEEEEcCCCCeE
Confidence 445677889999999999999999999999999999999987 23333333 349999999999776
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-12 Score=116.30 Aligned_cols=184 Identities=20% Similarity=0.269 Sum_probs=130.7
Q ss_pred eeEEEECCCCcEEEEEecCC--eEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 99 ISALDFDCKGIYLVSATRSG--CLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg--~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
|.-+-|+. .++|..+.+. .+++.+......+... .-..+ |.+|.++-+ .++++--
T Consensus 49 IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~ICe~---------------~fpt~---IL~VrmNr~--RLvV~Le- 105 (391)
T KOG2110|consen 49 IVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTTICEI---------------FFPTS---ILAVRMNRK--RLVVCLE- 105 (391)
T ss_pred EEEeeccc--ceeEEEecCCCceEEEEEcccCceEEEE---------------ecCCc---eEEEEEccc--eEEEEEc-
Confidence 55555655 4666666543 4888888874444321 01112 889999876 2444443
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe--CCCcEEEEECCCCCcCceeeccC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD--THGVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~ 254 (489)
..|.|||++. .+.+...... ..|..++.++.+++.+. +++.=+ ..|.|.+||+.+-+ .+..+.+
T Consensus 106 --e~IyIydI~~-----MklLhTI~t~----~~n~~gl~AlS~n~~n~-ylAyp~s~t~GdV~l~d~~nl~--~v~~I~a 171 (391)
T KOG2110|consen 106 --ESIYIYDIKD-----MKLLHTIETT----PPNPKGLCALSPNNANC-YLAYPGSTTSGDVVLFDTINLQ--PVNTINA 171 (391)
T ss_pred --ccEEEEeccc-----ceeehhhhcc----CCCccceEeeccCCCCc-eEEecCCCCCceEEEEEcccce--eeeEEEe
Confidence 4699999943 3455544432 45666788887777666 555433 57899999998755 5667779
Q ss_pred CCCceeEEEEeecCCEEEEEeCCCe-EEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeecc
Q 037120 255 SHGTLNSIQLHAENQIIFAAGKHGS-IYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLK 321 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~dg~-i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~ 321 (489)
|++.+.+++|+++|.+|++++..|+ ||+|.+.+|+.+++|..-.. ...|.+++|+|++.+++...
T Consensus 172 H~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--~~~IySL~Fs~ds~~L~~sS 237 (391)
T KOG2110|consen 172 HKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--PVSIYSLSFSPDSQFLAASS 237 (391)
T ss_pred cCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--eeEEEEEEECCCCCeEEEec
Confidence 9999999999999999999999775 89999999999999874332 25589999999999886533
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-13 Score=135.15 Aligned_cols=160 Identities=18% Similarity=0.177 Sum_probs=103.0
Q ss_pred CCCceeEEEECCCCcEEEEEecC---CeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRS---GCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~d---g~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+...+.+.+|+|||+.||.++.+ ..|++||+.+...... ..+.+| ..+++|+|++..++
T Consensus 202 ~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l------------~~~~g~------~~~~~wSPDG~~La 263 (429)
T PRK01742 202 SSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVV------------ASFRGH------NGAPAFSPDGSRLA 263 (429)
T ss_pred CCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEE------------ecCCCc------cCceeECCCCCEEE
Confidence 44558999999999999988754 4699999987432210 011112 33489999997566
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++.+.+ |.+.||.+...... ... +..+...+....|+|+|+.+++++..++...||++...... ...
T Consensus 264 ~~~~~~-g~~~Iy~~d~~~~~-------~~~----lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~-~~~ 330 (429)
T PRK01742 264 FASSKD-GVLNIYVMGANGGT-------PSQ----LTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG-ASL 330 (429)
T ss_pred EEEecC-CcEEEEEEECCCCC-------eEe----eccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-eEE
Confidence 655556 87777755322111 111 13455577889999999933444446788888887643222 222
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCc
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGR 289 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~ 289 (489)
. .+.. .+..|+|+|++++.++.++ +.+||+.+++
T Consensus 331 l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~ 364 (429)
T PRK01742 331 V-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGS 364 (429)
T ss_pred e-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCC
Confidence 2 3333 4578999999998887765 5558988764
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-13 Score=127.41 Aligned_cols=186 Identities=16% Similarity=0.243 Sum_probs=131.4
Q ss_pred CCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEE
Q 037120 106 CKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYD 185 (489)
Q Consensus 106 ~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd 185 (489)
|+|--|..|=..|.|.+.|....+.... +... . ...... |+|+.|-|.+..+++.+-.+ |.+.+||
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~skl--------fne~-r-~i~kts---vT~ikWvpg~~~~Fl~a~~s-Gnlyly~ 248 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKL--------FNEE-R-LINKSS---VTCIKWVPGSDSLFLVAHAS-GNLYLYD 248 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHh--------hhhc-c-cccccc---eEEEEEEeCCCceEEEEEec-CceEEee
Confidence 4466677788888888887765222210 0000 0 001122 99999999988888877777 9999998
Q ss_pred eccCCC--CCce-eeeece-------------eeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 186 IGYISD--EPVE-VLKTRR-------------SVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 186 ~~~~~~--~~~~-~~~~~~-------------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
...... .+.. .++... ..+....--...|+..+|+|||+ +|++.+.||.++|+|..+.+ .+
T Consensus 249 ~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~e--Ll 325 (636)
T KOG2394|consen 249 KEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQE--LL 325 (636)
T ss_pred ccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccHHH--HH
Confidence 742211 1100 000000 00000111234889999999999 99999999999999999866 33
Q ss_pred eeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCC
Q 037120 250 ELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLAS 312 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 312 (489)
-.++.--+...|++|+|||++|++||.|.-|.||.+...+.+..=++|... |+.|+|.|
T Consensus 326 g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSW----Vs~VaFDp 384 (636)
T KOG2394|consen 326 GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSW----VSVVAFDP 384 (636)
T ss_pred HHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccccccc----eeeEeecc
Confidence 333334578999999999999999999999999999998888888999999 99999998
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.9e-13 Score=125.44 Aligned_cols=201 Identities=12% Similarity=0.152 Sum_probs=138.6
Q ss_pred CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEec
Q 037120 108 GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIG 187 (489)
Q Consensus 108 g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~ 187 (489)
.+.|+.++.||.+.|.+-.. ..+. ....|... |.|-.|+|+|..++. +++| |.|++|.-.
T Consensus 75 ~d~~~i~s~DGkf~il~k~~-------------rVE~--sv~AH~~A---~~~gRW~~dGtgLlt-~GED-G~iKiWSrs 134 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSA-------------RVER--SISAHAAA---ISSGRWSPDGAGLLT-AGED-GVIKIWSRS 134 (737)
T ss_pred cceEEEEcCCceEEEecccc-------------hhhh--hhhhhhhh---hhhcccCCCCceeee-ecCC-ceEEEEecc
Confidence 45788889999999886544 1111 11235555 888999999986655 5555 999999862
Q ss_pred cCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeec
Q 037120 188 YISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAE 267 (489)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~ 267 (489)
.. +.. ++.....+|.+++|.|+.++.+++.+ +.+.|=-+....+ .+ ...+|.+-|.++.|+|.
T Consensus 135 GM-------LRS------tl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IKpL~~n~k-~i-~WkAHDGiiL~~~W~~~ 197 (737)
T KOG1524|consen 135 GM-------LRS------TVVQNEESIRCARWAPNSNSIVFCQG--GHISIKPLAANSK-II-RWRAHDGLVLSLSWSTQ 197 (737)
T ss_pred ch-------HHH------HHhhcCceeEEEEECCCCCceEEecC--CeEEEeecccccc-ee-EEeccCcEEEEeecCcc
Confidence 11 110 01223458999999999996666555 4555554444332 23 45699999999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce-eecc--ccceeeccceeEEEeCCCCCeEE
Q 037120 268 NQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI-GTLK--AQSKIVSQEIHSIDLDPSCSYQL 344 (489)
Q Consensus 268 ~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i-~~~~--~~~~~~~~~i~~~~~~p~~~~~~ 344 (489)
++++++||.|-..++||-. |..+..-..|+-+ |++++|+|+..+. .+.. ...+.....|..+++++||..+.
T Consensus 198 s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~----ITSva~npd~~~~v~S~nt~R~~~p~~GSifnlsWS~DGTQ~a 272 (737)
T KOG1524|consen 198 SNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYA----ITSVAFNPEKDYLLWSYNTARFSSPRVGSIFNLSWSADGTQAT 272 (737)
T ss_pred ccceeecCCceeEEeeccc-CcccccCChhccc----eeeeeeccccceeeeeeeeeeecCCCccceEEEEEcCCCceee
Confidence 9999999999999999975 5556666666655 9999999995433 2221 22223356789999999998766
Q ss_pred EEEecC
Q 037120 345 AFHLDD 350 (489)
Q Consensus 345 ~~~~~~ 350 (489)
.++..+
T Consensus 273 ~gt~~G 278 (737)
T KOG1524|consen 273 CGTSTG 278 (737)
T ss_pred ccccCc
Confidence 554433
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3e-13 Score=113.32 Aligned_cols=135 Identities=18% Similarity=0.224 Sum_probs=97.9
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
|.+-+|+|.++ +|++|..+ |+|.+..+...... ....+.+..+.+..+|..+|+.++|+ +. +|++|+ ||.|+
T Consensus 13 vf~qa~sp~~~-~l~agn~~-G~iav~sl~sl~s~--sa~~~gk~~iv~eqahdgpiy~~~f~--d~-~Lls~g-dG~V~ 84 (325)
T KOG0649|consen 13 VFAQAISPSKQ-YLFAGNLF-GDIAVLSLKSLDSG--SAEPPGKLKIVPEQAHDGPIYYLAFH--DD-FLLSGG-DGLVY 84 (325)
T ss_pred HHHHhhCCcce-EEEEecCC-CeEEEEEehhhhcc--ccCCCCCcceeeccccCCCeeeeeee--hh-heeecc-CceEE
Confidence 66788999886 67777777 99999999643221 11122333344558899999999998 33 677777 69999
Q ss_pred EEECCCCCc-----Cceeecc-CC-----CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCcc
Q 037120 238 IWDRRVGVL-----PSLELST-GS-----HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEV 300 (489)
Q Consensus 238 iwd~~~~~~-----~~~~~~~-~h-----~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~ 300 (489)
-|..+...+ +.++... .| --.|+++-+.|..+-++.++.|+.++-||+.+|+..+++.+|.+.
T Consensus 85 gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDY 158 (325)
T KOG0649|consen 85 GWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDY 158 (325)
T ss_pred EeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcce
Confidence 998765322 1111111 12 236899999998888888889999999999999999999998866
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.9e-13 Score=122.29 Aligned_cols=198 Identities=16% Similarity=0.186 Sum_probs=131.9
Q ss_pred eEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEE
Q 037120 159 DAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNI 238 (489)
Q Consensus 159 ~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~i 238 (489)
.+++|++++. ++++++.| |++|||+.... ..... ...|...|.++.|+||++ .|++-+.| ..+|
T Consensus 148 k~vaf~~~gs-~latgg~d-g~lRv~~~Ps~--------~t~l~----e~~~~~eV~DL~FS~dgk-~lasig~d-~~~V 211 (398)
T KOG0771|consen 148 KVVAFNGDGS-KLATGGTD-GTLRVWEWPSM--------LTILE----EIAHHAEVKDLDFSPDGK-FLASIGAD-SARV 211 (398)
T ss_pred eEEEEcCCCC-Eeeecccc-ceEEEEecCcc--------hhhhh----hHhhcCccccceeCCCCc-EEEEecCC-ceEE
Confidence 5699999986 89999988 99999997211 11111 266889999999999999 99999999 9999
Q ss_pred EECCCCCcCceeecc--CCCCceeEEEEeecC---CEEEEEeC--CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeC
Q 037120 239 WDRRVGVLPSLELST--GSHGTLNSIQLHAEN---QIIFAAGK--HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLA 311 (489)
Q Consensus 239 wd~~~~~~~~~~~~~--~h~~~v~~~~~~p~~---~~l~~~~~--dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~ 311 (489)
||++++. ++.... ....-+..+.|+.++ .+.+++.. -+.|+.||+...+.-..++..+
T Consensus 212 W~~~~g~--~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~------------- 276 (398)
T KOG0771|consen 212 WSVNTGA--ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRK------------- 276 (398)
T ss_pred EEeccCc--hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhh-------------
Confidence 9999984 332222 223345577777666 33333322 5667776665322110000000
Q ss_pred CCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCccee
Q 037120 312 SMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSW 391 (489)
Q Consensus 312 ~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (489)
.......|.+++++++
T Consensus 277 ------------~~~~~~siSsl~VS~d---------------------------------------------------- 292 (398)
T KOG0771|consen 277 ------------KIKRFKSISSLAVSDD---------------------------------------------------- 292 (398)
T ss_pred ------------hhhccCcceeEEEcCC----------------------------------------------------
Confidence 0001123444445444
Q ss_pred ecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcce
Q 037120 392 LSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSS 471 (489)
Q Consensus 392 ~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~ 471 (489)
+.+++-|+.||.|-|++..+- +.++-.+. .|...|+++.|+|+...+++-+.+..
T Consensus 293 ----Gkf~AlGT~dGsVai~~~~~l----------q~~~~vk~-----------aH~~~VT~ltF~Pdsr~~~svSs~~~ 347 (398)
T KOG0771|consen 293 ----GKFLALGTMDGSVAIYDAKSL----------QRLQYVKE-----------AHLGFVTGLTFSPDSRYLASVSSDNE 347 (398)
T ss_pred ----CcEEEEeccCCcEEEEEecee----------eeeEeehh-----------hheeeeeeEEEcCCcCcccccccCCc
Confidence 556667788999999998877 55554431 69999999999999999988888877
Q ss_pred eEEEe
Q 037120 472 LLVVS 476 (489)
Q Consensus 472 i~v~~ 476 (489)
..|..
T Consensus 348 ~~v~~ 352 (398)
T KOG0771|consen 348 AAVTK 352 (398)
T ss_pred eeEEE
Confidence 77753
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-12 Score=121.88 Aligned_cols=192 Identities=12% Similarity=0.109 Sum_probs=113.3
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEe-----eCCCCCEEEE
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRW-----NLANQDEVAC 173 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~-----~~~~~~~l~s 173 (489)
+....++-.|++|+-.-. ..+.||+........... ....+.+ ..-+|-+| .|.+-.+++
T Consensus 126 ~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi--------~k~~y~g-----t~P~cHdfn~~~a~~~g~dllI- 190 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPI--------DKREYKG-----TSPTCHDFNSFTATPKGLDLLI- 190 (636)
T ss_pred eeeccccCCCCEEEEecC-CeEEEEEccCcchhccch--------hhhcccC-----CCCceecccccccCCCCcceEE-
Confidence 445555566777755432 358888887522222110 0000000 00222333 234433454
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCC---CcCcee
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVG---VLPSLE 250 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~ 250 (489)
|-.. |.|.+.|.... +..+.+.... .-....|+++.|-|.+.+.|+.+-.+|.+++||.... +.++..
T Consensus 191 Gf~t-Gqvq~idp~~~--~~sklfne~r------~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 191 GFTT-GQVQLIDPINF--EVSKLFNEER------LINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred eecc-CceEEecchhh--HHHHhhhhcc------cccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 4444 89999988431 1111111111 1234689999999999888888889999999976421 000110
Q ss_pred -----------------------eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeE
Q 037120 251 -----------------------LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTS 307 (489)
Q Consensus 251 -----------------------~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~ 307 (489)
...--++.|+.++|+|||++|++.+.||.+||||..+.+.+..++.--+. ..+
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGG----LLC 337 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGG----LLC 337 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccc----eEE
Confidence 00011357889999999999999999999999999987766666544444 666
Q ss_pred EEeCCCCccee
Q 037120 308 LKLASMLEKIG 318 (489)
Q Consensus 308 l~~~~~~~~i~ 318 (489)
++|+|||++|+
T Consensus 338 vcWSPDGKyIv 348 (636)
T KOG2394|consen 338 VCWSPDGKYIV 348 (636)
T ss_pred EEEcCCccEEE
Confidence 66666655444
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-11 Score=116.63 Aligned_cols=165 Identities=9% Similarity=0.034 Sum_probs=104.8
Q ss_pred CceeEEEECCCCcEEEEEe-cCCeEEEEeCCC-cccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 97 PGISALDFDCKGIYLVSAT-RSGCLTVHDFES-LYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~-~dg~i~vwd~~~-~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
.....++|+|++++|++++ .++.|.+|+++. +..... ... ..... ...++|+|+++.++++.
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~----------~~~---~~~~~---p~~i~~~~~g~~l~v~~ 98 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFA----------AES---PLPGS---PTHISTDHQGRFLFSAS 98 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEe----------eee---cCCCC---ceEEEECCCCCEEEEEE
Confidence 3467889999999987765 488999999863 111110 000 01111 45699999997555554
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCc----ee
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPS----LE 250 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~----~~ 250 (489)
..+ +.|.+|++...... ...+ .. ..+......++++|+++..+++...++.|.+||+.+..... ..
T Consensus 99 ~~~-~~v~v~~~~~~g~~-~~~~---~~-----~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~ 168 (330)
T PRK11028 99 YNA-NCVSVSPLDKDGIP-VAPI---QI-----IEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAE 168 (330)
T ss_pred cCC-CeEEEEEECCCCCC-CCce---ee-----ccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCc
Confidence 445 99999999532111 0111 10 11223466788999998444556678999999998633110 00
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCC
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRG 287 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~ 287 (489)
...........++|+|++++++++.. ++.|.+||+..
T Consensus 169 ~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~ 206 (330)
T PRK11028 169 VTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD 206 (330)
T ss_pred eecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence 00111234578999999999999877 99999999974
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-12 Score=113.26 Aligned_cols=119 Identities=10% Similarity=0.157 Sum_probs=94.6
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
|+|.+|+++.+ .++.+..+ ..|.||...... .....+++..|...|+.|+|.|..+ .|++|+.|..-+
T Consensus 13 itchAwn~drt-~iAv~~~~-~evhiy~~~~~~---------~w~~~htls~Hd~~vtgvdWap~sn-rIvtcs~drnay 80 (361)
T KOG1523|consen 13 ITCHAWNSDRT-QIAVSPNN-HEVHIYSMLGAD---------LWEPAHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRNAY 80 (361)
T ss_pred eeeeeecCCCc-eEEeccCC-ceEEEEEecCCC---------CceeceehhhhCcceeEEeecCCCC-ceeEccCCCCcc
Confidence 99999999987 55555555 799999984321 1234556688999999999999998 999999999999
Q ss_pred EEECCCC-CcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC
Q 037120 238 IWDRRVG-VLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGG 288 (489)
Q Consensus 238 iwd~~~~-~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~ 288 (489)
+|....+ +....-.+..++...+++.|+|.++.+++|+.-..|.||-+...
T Consensus 81 Vw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~E 132 (361)
T KOG1523|consen 81 VWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQE 132 (361)
T ss_pred ccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecc
Confidence 9998443 32222234467889999999999999999999999999887753
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.9e-12 Score=111.83 Aligned_cols=114 Identities=15% Similarity=0.289 Sum_probs=83.5
Q ss_pred eeEEEeeCCCCCEEEE-EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeC---C
Q 037120 158 LDAVRWNLANQDEVAC-ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT---H 233 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s-~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~---d 233 (489)
|.+++|+|++..++++ |..+ +.|.+||++ . .. ...+ +...++.|.|+|+|+ +|++++. .
T Consensus 62 I~~~~WsP~g~~favi~g~~~-~~v~lyd~~-----~-~~---i~~~------~~~~~n~i~wsP~G~-~l~~~g~~n~~ 124 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGSMP-AKVTLYDVK-----G-KK---IFSF------GTQPRNTISWSPDGR-FLVLAGFGNLN 124 (194)
T ss_pred eEEEEECcCCCEEEEEEccCC-cccEEEcCc-----c-cE---eEee------cCCCceEEEECCCCC-EEEEEEccCCC
Confidence 9999999999866555 3445 799999993 1 11 1111 345788999999999 8887764 4
Q ss_pred CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC------CCeEEEEEcCCCcccce
Q 037120 234 GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK------HGSIYLWDLRGGRTSAP 293 (489)
Q Consensus 234 g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~------dg~i~lwd~~~~~~~~~ 293 (489)
|.|.+||.++.+ .+... .| ..++.++|+|+|++++++.. |+.++||+.. |+.+..
T Consensus 125 G~l~~wd~~~~~--~i~~~-~~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 125 GDLEFWDVRKKK--KISTF-EH-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred cEEEEEECCCCE--Eeecc-cc-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEe
Confidence 679999999655 44333 33 45789999999999999864 7889999985 555443
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-12 Score=128.61 Aligned_cols=201 Identities=16% Similarity=0.177 Sum_probs=127.1
Q ss_pred ceeEEEECCC--CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCC--CCCCceeEEEeeCCCCCEEEE
Q 037120 98 GISALDFDCK--GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHI--PLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 98 ~V~~~~fs~~--g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~--~~~~~V~~v~~~~~~~~~l~s 173 (489)
.|+.+.+-.+ ..+|++|+.||.|+||+--.......+ ....-..+.++. ..+.+ .-++|......++++
T Consensus 1111 ~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~e------LVTaw~~Ls~~~~~~r~~~-~v~dWqQ~~G~Ll~t 1183 (1387)
T KOG1517|consen 1111 RVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPE------LVTAWSSLSDQLPGARGTG-LVVDWQQQSGHLLVT 1183 (1387)
T ss_pred ccceeeeecccchhheeeeccCceEEEecccccccCCce------eEEeeccccccCccCCCCC-eeeehhhhCCeEEec
Confidence 4888888653 578999999999999964321100000 001111111111 11112 336898887666666
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-ceeec
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-SLELS 252 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~ 252 (489)
|. -..|+|||.... .++.... .+-...|+++.-...+.++|++|..||.|++||.|..... .+...
T Consensus 1184 Gd--~r~IRIWDa~~E-----~~~~diP------~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~ 1250 (1387)
T KOG1517|consen 1184 GD--VRSIRIWDAHKE-----QVVADIP------YGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVY 1250 (1387)
T ss_pred CC--eeEEEEEecccc-----eeEeecc------cCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceee
Confidence 65 389999999322 3332222 3344567777665555459999999999999999986443 45556
Q ss_pred cCCCCc--eeEEEEeecCCE-EEEEeCCCeEEEEEcCCCcc--cceeecCCccCCCCeeEEEeCCCCcceee
Q 037120 253 TGSHGT--LNSIQLHAENQI-IFAAGKHGSIYLWDLRGGRT--SAPFHNHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 253 ~~h~~~--v~~~~~~p~~~~-l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
..|+.. |..+.+.+.|-- |++|+.||.|++||+|.... ..++..|-+. ...++++..++....+++
T Consensus 1251 R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y-Gs~lTal~VH~hapiiAs 1321 (1387)
T KOG1517|consen 1251 REHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY-GSALTALTVHEHAPIIAS 1321 (1387)
T ss_pred cccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeecccc-CccceeeeeccCCCeeee
Confidence 688877 999999987655 89999999999999998422 2222232211 012777777777666654
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.1e-13 Score=123.68 Aligned_cols=234 Identities=15% Similarity=0.245 Sum_probs=149.2
Q ss_pred cccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCc
Q 037120 146 SKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTS 225 (489)
Q Consensus 146 ~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 225 (489)
.++.||.+. |.|++|+.+|. +|++|++| -.+.|||.- ..+.+.... .||...|.++.|-|...+
T Consensus 44 ~eL~GH~GC---VN~LeWn~dG~-lL~SGSDD-~r~ivWd~~-----~~KllhsI~------TgHtaNIFsvKFvP~tnn 107 (758)
T KOG1310|consen 44 AELTGHTGC---VNCLEWNADGE-LLASGSDD-TRLIVWDPF-----EYKLLHSIS------TGHTANIFSVKFVPYTNN 107 (758)
T ss_pred hhhccccce---ecceeecCCCC-EEeecCCc-ceEEeecch-----hcceeeeee------cccccceeEEeeeccCCC
Confidence 345677777 99999999996 99999988 999999992 113333333 789999999999996543
Q ss_pred -EEEEEeCCCcEEEEECCCCC--------cCceeeccCCCCceeEEEEeecC-CEEEEEeCCCeEEEEEcCCCcccceee
Q 037120 226 -RLIASDTHGVVNIWDRRVGV--------LPSLELSTGSHGTLNSIQLHAEN-QIIFAAGKHGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 226 -~l~s~s~dg~i~iwd~~~~~--------~~~~~~~~~h~~~v~~~~~~p~~-~~l~~~~~dg~i~lwd~~~~~~~~~~~ 295 (489)
++++|..|..|+++|+...+ .........|...|..++..|++ ..+.+++.||+|+-+|+|....-.
T Consensus 108 riv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~--- 184 (758)
T KOG1310|consen 108 RIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCN--- 184 (758)
T ss_pred eEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCC---
Confidence 78899999999999998521 11233455888999999999999 566777889999999999642211
Q ss_pred cCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEe------eccceeeecCC
Q 037120 296 NHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDV------YNSRVSHVHCP 369 (489)
Q Consensus 296 ~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~------~~~~~~~~~~~ 369 (489)
+.+. .++..+.++++- -...++.++|...+.++.+..+-+..+.+. +...-....|+
T Consensus 185 -p~~~--~~~~l~ny~~~l--------------ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~p 247 (758)
T KOG1310|consen 185 -PDED--CPSILVNYNPQL--------------IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCP 247 (758)
T ss_pred -cccc--ccHHHHHhchhh--------------heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCC
Confidence 1111 011112222211 234677888888877777666654333331 11111112222
Q ss_pred CC------CCcCCC--C--ccccccC--CCcceeecCCcEEEEeecCCCcEEEEeccCC
Q 037120 370 PP------AWLSDS--N--NSADQLH--LRKPSWLSTNSIYAVGSSSDHGIHLLDFFPG 416 (489)
Q Consensus 370 ~~------~~~~~~--~--~~~~~~~--~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~ 416 (489)
+. -|.+.- + ...+... ...+.|.|+|..+|++=+. -.|+++|+..+
T Consensus 248 p~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~g-EhVYlfdvn~~ 305 (758)
T KOG1310|consen 248 PKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGG-EHVYLFDVNED 305 (758)
T ss_pred CcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCC-eEEEEEeecCC
Confidence 10 011110 0 0111111 2457889999999998433 27999999877
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-12 Score=124.58 Aligned_cols=218 Identities=13% Similarity=0.087 Sum_probs=150.9
Q ss_pred ccccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 91 RRSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
++.+|..-|.|++|+.||+.+|+|+.|..|.||+-.-..... -.|... |.|+.|+|-+. .
T Consensus 48 tLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~Lk----------------YSH~D~---IQCMsFNP~~h-~ 107 (1081)
T KOG1538|consen 48 PLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILK----------------YSHNDA---IQCMSFNPITH-Q 107 (1081)
T ss_pred ccccccceEEEEEEccCCceeccCCCceeEEEecccccceee----------------eccCCe---eeEeecCchHH-H
Confidence 477788889999999999999999999999999765422111 235555 99999999975 6
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
+++++- ...-+|..... .+.+ ......|.+++|..||+ +|+-|-.+|+|.+-+....++..++
T Consensus 108 LasCsL--sdFglWS~~qK-----~V~K---------~kss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~gEek~~I~ 170 (1081)
T KOG1538|consen 108 LASCSL--SDFGLWSPEQK-----SVSK---------HKSSSRIICCSWTNDGQ-YLALGMFNGTISIRNKNGEEKVKIE 170 (1081)
T ss_pred hhhcch--hhccccChhhh-----hHHh---------hhhheeEEEeeecCCCc-EEEEeccCceEEeecCCCCcceEEe
Confidence 777763 36778876321 1111 11234789999999999 9999999999999865543333455
Q ss_pred eccCCCCceeEEEEeecC-----CEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceee------
Q 037120 251 LSTGSHGTLNSIQLHAEN-----QIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGT------ 319 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~-----~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~------ 319 (489)
...+.+.+|.+++|+|.. ..+++.....++.+|.+.. +.+..-....-. -.++.+.++|+++.-
T Consensus 171 Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG-~~Igk~r~L~Fd----P~CisYf~NGEy~LiGGsdk~ 245 (1081)
T KOG1538|consen 171 RPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG-KQIGKDRALNFD----PCCISYFTNGEYILLGGSDKQ 245 (1081)
T ss_pred CCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc-eeecccccCCCC----chhheeccCCcEEEEccCCCc
Confidence 555778999999999964 3455555566666666653 222111111111 457778888887611
Q ss_pred ----------ccccceeeccceeEEEeCCCCCeEEEEEecCC
Q 037120 320 ----------LKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDG 351 (489)
Q Consensus 320 ----------~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~ 351 (489)
+.+.. .....|+.+...|++.++++++.|++
T Consensus 246 L~~fTR~GvrLGTvg-~~D~WIWtV~~~PNsQ~v~~GCqDGT 286 (1081)
T KOG1538|consen 246 LSLFTRDGVRLGTVG-EQDSWIWTVQAKPNSQYVVVGCQDGT 286 (1081)
T ss_pred eEEEeecCeEEeecc-ccceeEEEEEEccCCceEEEEEccCe
Confidence 00111 24567999999999999999999987
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.9e-13 Score=124.62 Aligned_cols=175 Identities=18% Similarity=0.246 Sum_probs=134.9
Q ss_pred CCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 96 KPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
+-|-..+.|+.+|++|+.|+.-|.|..+|+.+....... ...+ . |.++.|-.+.+ +++.+-
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei---------~v~E------t---v~Dv~~LHneq-~~AVAQ 189 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI---------NVME------T---VRDVTFLHNEQ-FFAVAQ 189 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeee---------ehhh------h---hhhhhhhcchH-HHHhhh
Confidence 345678899999999999999999999999985444320 1111 1 77799987754 666666
Q ss_pred cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCC
Q 037120 176 TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGS 255 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h 255 (489)
...+.|||-. ...+.+.+. ...|..+.|.|..- +|++++..|.++.-|+.+|+ .+..+..-
T Consensus 190 --K~y~yvYD~~------GtElHClk~--------~~~v~rLeFLPyHf-LL~~~~~~G~L~Y~DVS~Gk--lVa~~~t~ 250 (545)
T KOG1272|consen 190 --KKYVYVYDNN------GTELHCLKR--------HIRVARLEFLPYHF-LLVAASEAGFLKYQDVSTGK--LVASIRTG 250 (545)
T ss_pred --hceEEEecCC------CcEEeehhh--------cCchhhhcccchhh-eeeecccCCceEEEeechhh--hhHHHHcc
Confidence 4799999972 233333332 23789999999988 99999999999999999998 44444455
Q ss_pred CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCC
Q 037120 256 HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLAS 312 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 312 (489)
.+.+..++-+|-+..+-+|...|+|.+|.......+..+..|.++ |.++++.+
T Consensus 251 ~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~----V~siAv~~ 303 (545)
T KOG1272|consen 251 AGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGP----VSSIAVDR 303 (545)
T ss_pred CCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCC----cceEEECC
Confidence 688899999999999999999999999999887778888888866 76665443
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.1e-11 Score=114.32 Aligned_cols=256 Identities=16% Similarity=0.202 Sum_probs=159.5
Q ss_pred ceeEEEECCCCcEE-EEEecCCeEEEEeCCCcccccC-CCCCCC-------------------CCcccccccccCCCC--
Q 037120 98 GISALDFDCKGIYL-VSATRSGCLTVHDFESLYYQCN-GTLPGV-------------------GLKEDQSKHLLHIPL-- 154 (489)
Q Consensus 98 ~V~~~~fs~~g~~l-a~g~~dg~i~vwd~~~~~~~~~-~~~~~~-------------------g~~~~~~~~~~h~~~-- 154 (489)
.-+.|..+|||+|+ |+|..--.|+|||+......-. .+...+ -..+-|...-.|...
T Consensus 53 ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~RI 132 (703)
T KOG2321|consen 53 ASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTRI 132 (703)
T ss_pred ccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeeec
Confidence 35677889999986 6777899999999986432111 000000 000111111111110
Q ss_pred CCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCC
Q 037120 155 PQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG 234 (489)
Q Consensus 155 ~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg 234 (489)
...-..++++.-+..+++.|+ +..|.-+++..+ . |+.++.-....+++|..++-+. +|++|+.||
T Consensus 133 P~~GRDm~y~~~scDly~~gs--g~evYRlNLEqG-----r-------fL~P~~~~~~~lN~v~in~~hg-Lla~Gt~~g 197 (703)
T KOG2321|consen 133 PKFGRDMKYHKPSCDLYLVGS--GSEVYRLNLEQG-----R-------FLNPFETDSGELNVVSINEEHG-LLACGTEDG 197 (703)
T ss_pred CcCCccccccCCCccEEEeec--CcceEEEEcccc-----c-------cccccccccccceeeeecCccc-eEEecccCc
Confidence 000123555544445777777 457777777322 2 3333344557999999999998 999999999
Q ss_pred cEEEEECCCCCcC-ce---eeccCCCC-----ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCe
Q 037120 235 VVNIWDRRVGVLP-SL---ELSTGSHG-----TLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPL 305 (489)
Q Consensus 235 ~i~iwd~~~~~~~-~~---~~~~~h~~-----~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v 305 (489)
.|..||.|..+.. .+ .....|.+ .|+++.|+-+|-.+++|..+|.|.|||+|+.+.+. .+.|... .||
T Consensus 198 ~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~-~kdh~~e--~pi 274 (703)
T KOG2321|consen 198 VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL-VKDHGYE--LPI 274 (703)
T ss_pred eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee-ecccCCc--cce
Confidence 9999999986432 11 11113333 39999999999999999999999999999866432 2233322 234
Q ss_pred eEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccC
Q 037120 306 TSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLH 385 (489)
Q Consensus 306 ~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (489)
..+.|.+.+
T Consensus 275 ~~l~~~~~~----------------------------------------------------------------------- 283 (703)
T KOG2321|consen 275 KKLDWQDTD----------------------------------------------------------------------- 283 (703)
T ss_pred eeecccccC-----------------------------------------------------------------------
Confidence 333332210
Q ss_pred CCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEe
Q 037120 386 LRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVA 465 (489)
Q Consensus 386 ~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~s 465 (489)
++..+++ .+...++|||-.++ +....++ + ...++.+++-|+..++.+
T Consensus 284 ---------~q~~v~S-~Dk~~~kiWd~~~G----------k~~asiE------------p-t~~lND~C~~p~sGm~f~ 330 (703)
T KOG2321|consen 284 ---------QQNKVVS-MDKRILKIWDECTG----------KPMASIE------------P-TSDLNDFCFVPGSGMFFT 330 (703)
T ss_pred ---------CCceEEe-cchHHhhhcccccC----------Cceeecc------------c-cCCcCceeeecCCceEEE
Confidence 0233444 13458899999888 5555555 3 334999999999999999
Q ss_pred ccCcceeEEE
Q 037120 466 GTKNSSLLVV 475 (489)
Q Consensus 466 gs~dg~i~v~ 475 (489)
+-+++.+.-|
T Consensus 331 Ane~~~m~~y 340 (703)
T KOG2321|consen 331 ANESSKMHTY 340 (703)
T ss_pred ecCCCcceeE
Confidence 9988877654
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.5e-11 Score=105.55 Aligned_cols=140 Identities=24% Similarity=0.350 Sum_probs=95.8
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
+..++|++.- ..++.+..| -.|++||-... .+ ..++ ..-...|++++|-|.+...|+.|+ -+-|+
T Consensus 101 lr~~aWhqH~-~~fava~nd-dvVriy~ksst--~p-t~Lk---------s~sQrnvtclawRPlsaselavgC-r~gIc 165 (445)
T KOG2139|consen 101 LRGVAWHQHI-IAFAVATND-DVVRIYDKSST--CP-TKLK---------SVSQRNVTCLAWRPLSASELAVGC-RAGIC 165 (445)
T ss_pred eeeEeechhh-hhhhhhccC-cEEEEeccCCC--CC-ceec---------chhhcceeEEEeccCCcceeeeee-cceeE
Confidence 6779999854 356666666 79999998441 11 2222 122348999999999986777666 56789
Q ss_pred EEECCCCCc----------Cceee--ccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcccceeecCCccCCCC
Q 037120 238 IWDRRVGVL----------PSLEL--STGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFHNHKEVCHLP 304 (489)
Q Consensus 238 iwd~~~~~~----------~~~~~--~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~~~~ 304 (489)
+|....... .+.+. ..+| .+|++++|++||..+++++. |..|.|||..++..+.......+.
T Consensus 166 iW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg---- 240 (445)
T KOG2139|consen 166 IWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGG---- 240 (445)
T ss_pred EEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCc----
Confidence 997643211 01111 1244 78999999999999999988 899999999998774443222333
Q ss_pred eeEEEeCCCCcce
Q 037120 305 LTSLKLASMLEKI 317 (489)
Q Consensus 305 v~~l~~~~~~~~i 317 (489)
++-+.|+|||.++
T Consensus 241 ~slLkwSPdgd~l 253 (445)
T KOG2139|consen 241 FSLLKWSPDGDVL 253 (445)
T ss_pred eeeEEEcCCCCEE
Confidence 6777777777655
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.6e-10 Score=111.90 Aligned_cols=139 Identities=13% Similarity=0.085 Sum_probs=84.5
Q ss_pred eeEEEeeCCCCCEEEEEecC-CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEE-EEeCCC-
Q 037120 158 LDAVRWNLANQDEVACASTR-SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLI-ASDTHG- 234 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d-~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~-s~s~dg- 234 (489)
+.+.+|+|+++.++++.... +..|.+||+..+.. ..+. .+.+ .+..++|+|||+ .|+ +.+.+|
T Consensus 201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~---~~l~-------~~~~---~~~~~~~SPDG~-~La~~~~~~g~ 266 (429)
T PRK03629 201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV---RQVA-------SFPR---HNGAPAFSPDGS-KLAFALSKTGS 266 (429)
T ss_pred eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe---EEcc-------CCCC---CcCCeEECCCCC-EEEEEEcCCCC
Confidence 78899999998555543221 25799999843311 1111 1123 344689999999 555 445555
Q ss_pred -cEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-CCe--EEEEEcCCCcccceeecCCccCCCCeeEEEe
Q 037120 235 -VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HGS--IYLWDLRGGRTSAPFHNHKEVCHLPLTSLKL 310 (489)
Q Consensus 235 -~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~--i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~ 310 (489)
.|++||+.+++ .. .+..+...+....|+|+|+.|+.++. ++. |+++|+.+++. ..+...... .....|
T Consensus 267 ~~I~~~d~~tg~--~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~----~~~~~~ 338 (429)
T PRK03629 267 LNLYVMDLASGQ--IR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQ----NQDADV 338 (429)
T ss_pred cEEEEEECCCCC--EE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCC----ccCEEE
Confidence 58899998865 33 23334456788999999998887776 444 55556665542 233222222 445566
Q ss_pred CCCCccee
Q 037120 311 ASMLEKIG 318 (489)
Q Consensus 311 ~~~~~~i~ 318 (489)
+|||+.++
T Consensus 339 SpDG~~Ia 346 (429)
T PRK03629 339 SSDGKFMV 346 (429)
T ss_pred CCCCCEEE
Confidence 66666554
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3e-12 Score=108.72 Aligned_cols=168 Identities=14% Similarity=0.188 Sum_probs=117.3
Q ss_pred ceeEEEECCC-C--cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 98 GISALDFDCK-G--IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 98 ~V~~~~fs~~-g--~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
.+.|..+..+ + -+|++|-.+|.|.+||+.++...-..+ + ..........|... |.++.+.+... .=++|
T Consensus 152 svmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~--~--~~kv~~~~ash~qp---vlsldyas~~~-rGisg 223 (323)
T KOG0322|consen 152 SVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLP--Q--SSKVESPNASHKQP---VLSLDYASSCD-RGISG 223 (323)
T ss_pred ceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccc--c--ccccccchhhccCc---ceeeeechhhc-CCcCC
Confidence 4777775433 2 345677789999999999852221100 0 01111222335555 88899987644 33455
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccC
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 254 (489)
+.+ ..+..|.+...... ..+.... .--+..|..+..-||++ .++|++.|+.|+||..++.. .+..++.
T Consensus 224 ga~-dkl~~~Sl~~s~gs--lq~~~e~------~lknpGv~gvrIRpD~K-IlATAGWD~RiRVyswrtl~--pLAVLky 291 (323)
T KOG0322|consen 224 GAD-DKLVMYSLNHSTGS--LQIRKEI------TLKNPGVSGVRIRPDGK-ILATAGWDHRIRVYSWRTLN--PLAVLKY 291 (323)
T ss_pred Ccc-ccceeeeeccccCc--ccccceE------EecCCCccceEEccCCc-EEeecccCCcEEEEEeccCC--chhhhhh
Confidence 555 68889998543221 1111111 11224788999999999 99999999999999999976 6667889
Q ss_pred CCCceeEEEEeecCCEEEEEeCCCeEEEEEc
Q 037120 255 SHGTLNSIQLHAENQIIFAAGKHGSIYLWDL 285 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~ 285 (489)
|++.|++++|+|+...+++++.|+.|.+|++
T Consensus 292 Hsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 292 HSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999999999986
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.7e-10 Score=99.64 Aligned_cols=242 Identities=11% Similarity=0.120 Sum_probs=146.5
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
....++|+.|...+++|..+| .+||+.+........ -+...+..+.-+-|--+ .+.+.|+.+
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r---------------~~~~~G~~~veMLfR~N--~laLVGGg~ 68 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASR---------------QFIDGGFKIVEMLFRSN--YLALVGGGS 68 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhh---------------ccccCchhhhhHhhhhc--eEEEecCCC
Confidence 355689999999999999887 899998862221110 01111111222323221 233333322
Q ss_pred -----CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC--cee
Q 037120 178 -----SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP--SLE 250 (489)
Q Consensus 178 -----~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~ 250 (489)
-+.|.|||=... . .+.. .. -..+|.+|.+.++ .|+..- .+.|+||.....-+. ++.
T Consensus 69 ~pky~pNkviIWDD~k~--~--~i~e-l~--------f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~e 131 (346)
T KOG2111|consen 69 RPKYPPNKVIIWDDLKE--R--CIIE-LS--------FNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVIE 131 (346)
T ss_pred CCCCCCceEEEEecccC--c--EEEE-EE--------eccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeeee
Confidence 258999994111 1 1111 11 2348999998764 455554 689999998743221 222
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcc--cceeecCCccCCCCeeEEEeCCCCcceeeccccceee
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRT--SAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIV 327 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~ 327 (489)
+. .....+.+++-+.+..+|+.-|. -|.|+|-|+...+. -..+..|... |.+++++-+
T Consensus 132 t~-~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~----Iacv~Ln~~-------------- 192 (346)
T KOG2111|consen 132 TR-SNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSD----IACVALNLQ-------------- 192 (346)
T ss_pred cc-cCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCc----eeEEEEcCC--------------
Confidence 22 21223444433334444444455 78999999887543 2455566544 555443322
Q ss_pred ccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCC-
Q 037120 328 SQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDH- 406 (489)
Q Consensus 328 ~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~- 406 (489)
|.+++|+|..|
T Consensus 193 --------------------------------------------------------------------Gt~vATaStkGT 204 (346)
T KOG2111|consen 193 --------------------------------------------------------------------GTLVATASTKGT 204 (346)
T ss_pred --------------------------------------------------------------------ccEEEEeccCcE
Confidence 55677777777
Q ss_pred cEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccccc
Q 037120 407 GIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQC 481 (489)
Q Consensus 407 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~ 481 (489)
-|||||..++ +.++++... --...|.+++|+|+..++|++|..|+|.||+-+...
T Consensus 205 LIRIFdt~~g----------~~l~E~RRG----------~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 205 LIRIFDTEDG----------TLLQELRRG----------VDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EEEEEEcCCC----------cEeeeeecC----------CchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCC
Confidence 5899999999 777775411 234679999999999999999999999999877643
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4e-11 Score=118.06 Aligned_cols=161 Identities=11% Similarity=0.016 Sum_probs=104.4
Q ss_pred cCCCceeEEEECCCCcEEEEEec---CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 94 FGKPGISALDFDCKGIYLVSATR---SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~---dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
.+...+.+.+|+|||+.|+..+. +..|.+||+.++..... . ..... ..+++|+|++..+
T Consensus 201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l---------~------~~~g~---~~~~~~SpDG~~l 262 (433)
T PRK04922 201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELV---------A------SFRGI---NGAPSFSPDGRRL 262 (433)
T ss_pred cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEe---------c------cCCCC---ccCceECCCCCEE
Confidence 34456889999999999998874 34699999977433221 0 01111 3458999999877
Q ss_pred EEEEecCCC--EEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCCc--EEEEECCCCC
Q 037120 171 VACASTRSN--VVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THGV--VNIWDRRVGV 245 (489)
Q Consensus 171 l~s~~~d~g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg~--i~iwd~~~~~ 245 (489)
+++.+.+ | .|.+||+..+. +.. +..+.......+|+|++. .|+.++ .+|. |+++|+.+++
T Consensus 263 ~~~~s~~-g~~~Iy~~d~~~g~------~~~-------lt~~~~~~~~~~~spDG~-~l~f~sd~~g~~~iy~~dl~~g~ 327 (433)
T PRK04922 263 ALTLSRD-GNPEIYVMDLGSRQ------LTR-------LTNHFGIDTEPTWAPDGK-SIYFTSDRGGRPQIYRVAASGGS 327 (433)
T ss_pred EEEEeCC-CCceEEEEECCCCC------eEE-------CccCCCCccceEECCCCC-EEEEEECCCCCceEEEEECCCCC
Confidence 6666655 4 68889984321 111 123334456789999999 666555 4554 6667776655
Q ss_pred cCceeeccCCCCceeEEEEeecCCEEEEEeCC---CeEEEEEcCCCcc
Q 037120 246 LPSLELSTGSHGTLNSIQLHAENQIIFAAGKH---GSIYLWDLRGGRT 290 (489)
Q Consensus 246 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~d---g~i~lwd~~~~~~ 290 (489)
.. .+..+.......+|+|+|++++..+.+ ..|.+||+.+++.
T Consensus 328 ~~---~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~ 372 (433)
T PRK04922 328 AE---RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSV 372 (433)
T ss_pred eE---EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCe
Confidence 22 222223345578999999998877553 2699999987653
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.5e-11 Score=107.19 Aligned_cols=181 Identities=19% Similarity=0.212 Sum_probs=120.2
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
.|..++.. +| .|++|-.+|.+.+|.......... +...+ ..+.++..|.-.+..++++++|+..
T Consensus 107 ~I~gl~~~-dg-~Litc~~sG~l~~~~~k~~d~hss----------~l~~l----a~g~g~~~~r~~~~~p~Iva~GGke 170 (412)
T KOG3881|consen 107 SIKGLKLA-DG-TLITCVSSGNLQVRHDKSGDLHSS----------KLIKL----ATGPGLYDVRQTDTDPYIVATGGKE 170 (412)
T ss_pred cccchhhc-CC-EEEEEecCCcEEEEeccCCccccc----------cceee----ecCCceeeeccCCCCCceEecCchh
Confidence 35555442 33 677888899999999885221110 00111 1122366777788888888877754
Q ss_pred -CCEEEEEEeccCCCCCceeeeeceeeeeec-CCcccCeeEEEEecC--CCcEEEEEeCCCcEEEEECCCCCcCceeecc
Q 037120 178 -SNVVSIYDIGYISDEPVEVLKTRRSVTVVG-SDVQKGLSDLAFSAV--NTSRLIASDTHGVVNIWDRRVGVLPSLELST 253 (489)
Q Consensus 178 -~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 253 (489)
-+.+.|||+... . +++.-.....-.+ ..-.-.++++.|.+. .. .|++++.-+.|++||.+.+..|+. .+.
T Consensus 171 ~~n~lkiwdle~~--~--qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~-~fat~T~~hqvR~YDt~~qRRPV~-~fd 244 (412)
T KOG3881|consen 171 NINELKIWDLEQS--K--QIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNY-KFATITRYHQVRLYDTRHQRRPVA-QFD 244 (412)
T ss_pred cccceeeeecccc--e--eeeeccCCCCccccceeeeeeccceecCCCCCc-eEEEEecceeEEEecCcccCccee-Eec
Confidence 147899999533 1 2222111100000 011235678899887 44 899999999999999998777744 344
Q ss_pred CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccce-eecCCcc
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAP-FHNHKEV 300 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~-~~~~~~~ 300 (489)
--+.+|+++...|+++++++|..-|.+..||+++++.+.. +++..+.
T Consensus 245 ~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGs 292 (412)
T KOG3881|consen 245 FLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGS 292 (412)
T ss_pred cccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCC
Confidence 5578999999999999999999999999999999887544 5555544
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-11 Score=104.29 Aligned_cols=138 Identities=16% Similarity=0.274 Sum_probs=92.5
Q ss_pred EEEeeCCCCCEEEEEecC--------CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEE--
Q 037120 160 AVRWNLANQDEVACASTR--------SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIA-- 229 (489)
Q Consensus 160 ~v~~~~~~~~~l~s~~~d--------~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s-- 229 (489)
.+.|++.|..+++....+ -+...+|.++.... +...+. .....+|.+++|+|++. .|+.
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~-~~~~i~---------l~~~~~I~~~~WsP~g~-~favi~ 78 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI-PVESIE---------LKKEGPIHDVAWSPNGN-EFAVIY 78 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC-ccceee---------ccCCCceEEEEECcCCC-EEEEEE
Confidence 388999998877766521 13466666643221 111111 11234699999999999 6543
Q ss_pred EeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC---CCeEEEEEcCCCcccceeecCCccCCCCee
Q 037120 230 SDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK---HGSIYLWDLRGGRTSAPFHNHKEVCHLPLT 306 (489)
Q Consensus 230 ~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~---dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 306 (489)
|..++.|.+||++. + .+..+ +...++.+.|+|+|+++++++. .|.|.+||+++.+.+..++.. . ++
T Consensus 79 g~~~~~v~lyd~~~-~--~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~--~----~t 147 (194)
T PF08662_consen 79 GSMPAKVTLYDVKG-K--KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS--D----AT 147 (194)
T ss_pred ccCCcccEEEcCcc-c--EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC--c----EE
Confidence 34678999999973 2 23333 3567899999999999999975 577999999987766665432 2 66
Q ss_pred EEEeCCCCcceee
Q 037120 307 SLKLASMLEKIGT 319 (489)
Q Consensus 307 ~l~~~~~~~~i~~ 319 (489)
.++|+|+|+++++
T Consensus 148 ~~~WsPdGr~~~t 160 (194)
T PF08662_consen 148 DVEWSPDGRYLAT 160 (194)
T ss_pred EEEEcCCCCEEEE
Confidence 6777766666653
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-10 Score=104.21 Aligned_cols=127 Identities=13% Similarity=0.192 Sum_probs=97.3
Q ss_pred ccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEE
Q 037120 149 LLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLI 228 (489)
Q Consensus 149 ~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 228 (489)
.+|++. |.++.|+.+++ .|++|+.| ..+++|++...--. ++-+++. .....|...|.+++|...+. .++
T Consensus 53 ~~H~GC---iNAlqFS~N~~-~L~SGGDD-~~~~~W~~de~~~~--k~~KPI~---~~~~~H~SNIF~L~F~~~N~-~~~ 121 (609)
T KOG4227|consen 53 REHTGC---INALQFSHNDR-FLASGGDD-MHGRVWNVDELMVR--KTPKPIG---VMEHPHRSNIFSLEFDLENR-FLY 121 (609)
T ss_pred hhhccc---cceeeeccCCe-EEeecCCc-ceeeeechHHHHhh--cCCCCce---eccCccccceEEEEEccCCe-eEe
Confidence 556666 89999999864 88888887 99999999432110 1111122 11255778999999998777 999
Q ss_pred EEeCCCcEEEEECCCCCcCceeeccCCC---CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCc
Q 037120 229 ASDTHGVVNIWDRRVGVLPSLELSTGSH---GTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGR 289 (489)
Q Consensus 229 s~s~dg~i~iwd~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~ 289 (489)
+|..+++|.+-|+.+.+ .+..+ .|. +.|+.+..+|..+.+++.+.+|.|.+||.+...
T Consensus 122 SG~~~~~VI~HDiEt~q--si~V~-~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 122 SGERWGTVIKHDIETKQ--SIYVA-NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred cCCCcceeEeeecccce--eeeee-cccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence 99999999999999876 33222 444 589999999999999999999999999999754
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.9e-11 Score=116.64 Aligned_cols=118 Identities=14% Similarity=0.127 Sum_probs=77.9
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC---CcEEEEECCCCCcCceeeccCC
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH---GVVNIWDRRVGVLPSLELSTGS 255 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~h 255 (489)
..|.+||..... .. .+..|...+.+.+|+|+|+ .|+.++.+ ..|++||+.+++...+....+|
T Consensus 184 ~~i~i~d~dg~~---------~~----~lt~~~~~v~~p~wSPDG~-~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~ 249 (429)
T PRK01742 184 YEVRVADYDGFN---------QF----IVNRSSQPLMSPAWSPDGS-KLAYVSFENKKSQLVVHDLRSGARKVVASFRGH 249 (429)
T ss_pred EEEEEECCCCCC---------ce----EeccCCCccccceEcCCCC-EEEEEEecCCCcEEEEEeCCCCceEEEecCCCc
Confidence 689999983221 11 1244667899999999999 77776643 4799999988753334333333
Q ss_pred CCceeEEEEeecCCEEEEEe-CCCeEEEE--EcCCCcccceeecCCccCCCCeeEEEeCCCCccee
Q 037120 256 HGTLNSIQLHAENQIIFAAG-KHGSIYLW--DLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~-~dg~i~lw--d~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
...++|+|+|+.|+.++ .+|.+.|| |+.+++ +..+..+... +....|+|||+.+.
T Consensus 250 ---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~----~~~~~wSpDG~~i~ 307 (429)
T PRK01742 250 ---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGN----NTEPSWSPDGQSIL 307 (429)
T ss_pred ---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCC----cCCEEECCCCCEEE
Confidence 34689999999888875 47765555 665544 3444444434 66777777776553
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.3e-11 Score=115.86 Aligned_cols=163 Identities=15% Similarity=0.139 Sum_probs=104.0
Q ss_pred cCCCceeEEEECCCCcEEEEEecC---CeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 94 FGKPGISALDFDCKGIYLVSATRS---GCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~d---g~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
.+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.... .. .... +.+.+|+|++..+
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l---------~~------~~g~---~~~~~~SPDG~~l 254 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV---------AN------FKGS---NSAPAWSPDGRTL 254 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe---------ec------CCCC---ccceEECCCCCEE
Confidence 344568899999999999887753 4599999987433220 00 1111 4568999999866
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCCcEEEEEC--CCCCcC
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THGVVNIWDR--RVGVLP 247 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg~i~iwd~--~~~~~~ 247 (489)
+++.+.+ |...||.+....... . .+..+........|+|||+ .|+..+ .+|...||.+ ..++..
T Consensus 255 a~~~~~~-g~~~Iy~~d~~~~~~-------~----~lt~~~~~~~~~~wSpDG~-~l~f~s~~~g~~~Iy~~~~~~g~~~ 321 (427)
T PRK02889 255 AVALSRD-GNSQIYTVNADGSGL-------R----RLTQSSGIDTEPFFSPDGR-SIYFTSDRGGAPQIYRMPASGGAAQ 321 (427)
T ss_pred EEEEccC-CCceEEEEECCCCCc-------E----ECCCCCCCCcCeEEcCCCC-EEEEEecCCCCcEEEEEECCCCceE
Confidence 6676766 887888764322111 1 1123344556788999999 555444 4566666655 443311
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEEeCCC---eEEEEEcCCCcc
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAAGKHG---SIYLWDLRGGRT 290 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg---~i~lwd~~~~~~ 290 (489)
.+ ..+.......+|+|+|++++.++.++ .|++||+.+++.
T Consensus 322 ~l---t~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~ 364 (427)
T PRK02889 322 RV---TFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQV 364 (427)
T ss_pred EE---ecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCe
Confidence 12 11223345678999999998776643 699999988653
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-10 Score=112.83 Aligned_cols=184 Identities=10% Similarity=-0.029 Sum_probs=117.6
Q ss_pred ccCCCceeEEEECCCCcEEEEEec---CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCC
Q 037120 93 SFGKPGISALDFDCKGIYLVSATR---SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQD 169 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~~la~g~~---dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~ 169 (489)
..+...+.+.+|+|||+.|+..+. +..|.+||+.++.... + ..+... +.+.+|+|++..
T Consensus 198 t~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~---------l------~~~~g~---~~~~~~SPDG~~ 259 (435)
T PRK05137 198 TDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL---------V------GNFPGM---TFAPRFSPDGRK 259 (435)
T ss_pred ecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE---------e------ecCCCc---ccCcEECCCCCE
Confidence 344556999999999999988764 4689999998743322 1 111112 566899999987
Q ss_pred EEEEEecCCCE--EEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCC--cEEEEECCCC
Q 037120 170 EVACASTRSNV--VSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THG--VVNIWDRRVG 244 (489)
Q Consensus 170 ~l~s~~~d~g~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg--~i~iwd~~~~ 244 (489)
++++.+.+ +. |.+||+... . + . .+..+........|+|+|. .|+..+ .+| .|++||+..+
T Consensus 260 la~~~~~~-g~~~Iy~~d~~~~--~----~---~----~Lt~~~~~~~~~~~spDG~-~i~f~s~~~g~~~Iy~~d~~g~ 324 (435)
T PRK05137 260 VVMSLSQG-GNTDIYTMDLRSG--T----T---T----RLTDSPAIDTSPSYSPDGS-QIVFESDRSGSPQLYVMNADGS 324 (435)
T ss_pred EEEEEecC-CCceEEEEECCCC--c----e---E----EccCCCCccCceeEcCCCC-EEEEEECCCCCCeEEEEECCCC
Confidence 77776655 54 666677322 1 1 1 1133444567789999999 666555 333 6888898765
Q ss_pred CcCceeeccCCCCceeEEEEeecCCEEEEEeCC---CeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCccee
Q 037120 245 VLPSLELSTGSHGTLNSIQLHAENQIIFAAGKH---GSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 245 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~d---g~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
+. . .+..+...+....|+|+|+.++..+.+ ..|.+||+.++.. ..+.. ... +..+.|+|||+.+.
T Consensus 325 ~~--~-~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~----~~~p~~spDG~~i~ 392 (435)
T PRK05137 325 NP--R-RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFL----VEGPTWAPNGRVIM 392 (435)
T ss_pred Ce--E-EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCC----CCCCeECCCCCEEE
Confidence 42 2 222334556778999999999887652 4688889765432 22221 112 55667777777664
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.2e-11 Score=104.93 Aligned_cols=135 Identities=12% Similarity=0.102 Sum_probs=94.2
Q ss_pred EEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 037120 161 VRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWD 240 (489)
Q Consensus 161 v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd 240 (489)
.+|+|++. .+++.+ +-.+.|-|..+. ++.+... --+.|.-+.|..+..+.+.....|+.|.+|+
T Consensus 14 c~fSp~g~-yiAs~~--~yrlviRd~~tl-----q~~qlf~--------cldki~yieW~ads~~ilC~~yk~~~vqvws 77 (447)
T KOG4497|consen 14 CSFSPCGN-YIASLS--RYRLVIRDSETL-----QLHQLFL--------CLDKIVYIEWKADSCHILCVAYKDPKVQVWS 77 (447)
T ss_pred eeECCCCC-eeeeee--eeEEEEeccchh-----hHHHHHH--------HHHHhhheeeeccceeeeeeeeccceEEEEE
Confidence 68999986 777777 467777777221 1111111 1236778899988886677777999999999
Q ss_pred CCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCccee
Q 037120 241 RRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 241 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
+...+.-|. +.....++.+++|+|+|+.++..+. |-.|.+|.+.+.+.. -++-.+.. +..++|+|||++.+
T Consensus 78 l~Qpew~ck--Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~-~~~~pK~~----~kg~~f~~dg~f~a 149 (447)
T KOG4497|consen 78 LVQPEWYCK--IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY-LLPHPKTN----VKGYAFHPDGQFCA 149 (447)
T ss_pred eecceeEEE--eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-EecccccC----ceeEEECCCCceee
Confidence 998774433 3345688999999999988888777 999999999986542 22211222 67777777776653
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-10 Score=113.17 Aligned_cols=183 Identities=10% Similarity=0.036 Sum_probs=114.5
Q ss_pred CCCceeEEEECCCCcEEEEEec---CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 95 GKPGISALDFDCKGIYLVSATR---SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~---dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+...+.+.+|||||+.||..+. +..|.+|++.+++.... ..+.++ +.+++|+|++..++
T Consensus 197 ~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l------------~~~~~~------~~~~~~SPDG~~La 258 (429)
T PRK03629 197 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV------------ASFPRH------NGAPAFSPDGSKLA 258 (429)
T ss_pred CCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc------------cCCCCC------cCCeEECCCCCEEE
Confidence 3345889999999999987653 45789999877432220 011111 34589999998666
Q ss_pred EEEecCCC--EEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeC-CCc--EEEEECCCCCc
Q 037120 172 ACASTRSN--VVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT-HGV--VNIWDRRVGVL 246 (489)
Q Consensus 172 ~s~~~d~g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~-dg~--i~iwd~~~~~~ 246 (489)
++.+.+ | .|.+||+..+. +. . +..+...+....|+|+|+ .|+..+. ++. |.++|+.+++
T Consensus 259 ~~~~~~-g~~~I~~~d~~tg~------~~---~----lt~~~~~~~~~~wSPDG~-~I~f~s~~~g~~~Iy~~d~~~g~- 322 (429)
T PRK03629 259 FALSKT-GSLNLYVMDLASGQ------IR---Q----VTDGRSNNTEPTWFPDSQ-NLAYTSDQAGRPQVYKVNINGGA- 322 (429)
T ss_pred EEEcCC-CCcEEEEEECCCCC------EE---E----ccCCCCCcCceEECCCCC-EEEEEeCCCCCceEEEEECCCCC-
Confidence 665544 4 58888884321 11 0 122334677899999999 6665554 444 4455666654
Q ss_pred CceeeccCCCCceeEEEEeecCCEEEEEeC-C--CeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceee
Q 037120 247 PSLELSTGSHGTLNSIQLHAENQIIFAAGK-H--GSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 247 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-d--g~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
.. .+..+........|+|+|++++..+. + ..|.+||+.+++. ..+.. ... .....|+|||+.+..
T Consensus 323 -~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~-~~~----~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 323 -PQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTD-TFL----DETPSIAPNGTMVIY 390 (429)
T ss_pred -eE-EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCC-CCC----CCCceECCCCCEEEE
Confidence 22 22233345567899999999887765 2 4688999988753 23322 111 345678888887754
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.5e-10 Score=101.59 Aligned_cols=251 Identities=14% Similarity=0.174 Sum_probs=158.5
Q ss_pred CceeEEEECCCC--cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 97 PGISALDFDCKG--IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 97 ~~V~~~~fs~~g--~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
..|..++|..++ ..|...+.|-.+..+.+....+... ........+.+.. |..++... ..|+++
T Consensus 56 ~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~--------~~~~~~~~l~~~~---I~gl~~~d---g~Litc 121 (412)
T KOG3881|consen 56 DRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS--------LDDAKTVSLGTKS---IKGLKLAD---GTLITC 121 (412)
T ss_pred hhhhhheeecCCceeEeeccccCcccccccccCCccccc--------ccccccccccccc---ccchhhcC---CEEEEE
Confidence 447777887654 4555555676777777776444432 1000011112222 44454432 245555
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC--CcEEEEECCCCCcCceeec
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH--GVVNIWDRRVGVLPSLELS 252 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~ 252 (489)
-.+ |.+.+|....+........ ... -..++..+.-++..++++++|+.. ..+.+||+.+.+ +.+.-.
T Consensus 122 ~~s-G~l~~~~~k~~d~hss~l~-----~la----~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~-qiw~aK 190 (412)
T KOG3881|consen 122 VSS-GNLQVRHDKSGDLHSSKLI-----KLA----TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK-QIWSAK 190 (412)
T ss_pred ecC-CcEEEEeccCCccccccce-----eee----cCCceeeeccCCCCCceEecCchhcccceeeeecccce-eeeecc
Confidence 545 9999999964431111111 111 113677788888888788889988 889999999863 222111
Q ss_pred c------CC--CCceeEEEEeec--CCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccc
Q 037120 253 T------GS--HGTLNSIQLHAE--NQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKA 322 (489)
Q Consensus 253 ~------~h--~~~v~~~~~~p~--~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~ 322 (489)
. +- .-.++.+.|-+. ...+++++.-+.+|+||.+.++. ||.++.|.
T Consensus 191 NvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRR-------------PV~~fd~~----------- 246 (412)
T KOG3881|consen 191 NVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRR-------------PVAQFDFL----------- 246 (412)
T ss_pred CCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCc-------------ceeEeccc-----------
Confidence 0 11 124568889887 77888888899999999997542 23333322
Q ss_pred cceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEee
Q 037120 323 QSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGS 402 (489)
Q Consensus 323 ~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 402 (489)
..+++++...|+ +.++++|
T Consensus 247 -----E~~is~~~l~p~--------------------------------------------------------gn~Iy~g 265 (412)
T KOG3881|consen 247 -----ENPISSTGLTPS--------------------------------------------------------GNFIYTG 265 (412)
T ss_pred -----cCcceeeeecCC--------------------------------------------------------CcEEEEe
Confidence 112233333232 4456666
Q ss_pred cCCCcEEEEeccCCCCCCeeeccCcccch-hhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 403 SSDHGIHLLDFFPGSSSPSHVDYNEDIES-LSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 403 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
..-+.+..+|++.+ ..+.. +. +..+.|.++..||..+++|+||.|..++|+..|.
T Consensus 266 n~~g~l~~FD~r~~----------kl~g~~~k------------g~tGsirsih~hp~~~~las~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 266 NTKGQLAKFDLRGG----------KLLGCGLK------------GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT 321 (412)
T ss_pred cccchhheecccCc----------eeeccccC------------CccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence 67778889999988 55544 55 8899999999999999999999999999998776
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.1e-09 Score=98.81 Aligned_cols=170 Identities=14% Similarity=0.115 Sum_probs=107.1
Q ss_pred eEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCC
Q 037120 100 SALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSN 179 (489)
Q Consensus 100 ~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g 179 (489)
..+.|+|||+++.+.+.||.|.++|+.+.+....- . .+..-..++++++++.++++.... +
T Consensus 40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i--------~----------~G~~~~~i~~s~DG~~~~v~n~~~-~ 100 (369)
T PF02239_consen 40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATI--------K----------VGGNPRGIAVSPDGKYVYVANYEP-G 100 (369)
T ss_dssp EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEE--------E-----------SSEEEEEEE--TTTEEEEEEEET-T
T ss_pred eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEE--------e----------cCCCcceEEEcCCCCEEEEEecCC-C
Confidence 44679999999999999999999999996655421 0 011156699999998666666666 9
Q ss_pred EEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCcCceeeccCCCCc
Q 037120 180 VVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THGVVNIWDRRVGVLPSLELSTGSHGT 258 (489)
Q Consensus 180 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~h~~~ 258 (489)
.+.++|.... +.++..........+....+.+|..+|..+ .++..- +.+.|.+-|....+....+.+ .....
T Consensus 101 ~v~v~D~~tl-----e~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~-~fVv~lkd~~~I~vVdy~d~~~~~~~~i-~~g~~ 173 (369)
T PF02239_consen 101 TVSVIDAETL-----EPVKTIPTGGMPVDGPESRVAAIVASPGRP-EFVVNLKDTGEIWVVDYSDPKNLKVTTI-KVGRF 173 (369)
T ss_dssp EEEEEETTT-------EEEEEE--EE-TTTS---EEEEEE-SSSS-EEEEEETTTTEEEEEETTTSSCEEEEEE-E--TT
T ss_pred ceeEeccccc-----cceeecccccccccccCCCceeEEecCCCC-EEEEEEccCCeEEEEEeccccccceeee-ccccc
Confidence 9999998332 333322211111122345778888888888 555554 458888889877543222222 23345
Q ss_pred eeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcccceee
Q 037120 259 LNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 259 v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~ 295 (489)
.....|+|++++++++.. ++.|-++|..+++.+..+.
T Consensus 174 ~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~ 211 (369)
T PF02239_consen 174 PHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALID 211 (369)
T ss_dssp EEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred ccccccCcccceeeecccccceeEEEeeccceEEEEee
Confidence 678899999999888755 7799999999987755554
|
... |
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.6e-09 Score=105.46 Aligned_cols=140 Identities=13% Similarity=0.082 Sum_probs=91.1
Q ss_pred eeEEEeeCCCCCEEEEEec-CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCc-
Q 037120 158 LDAVRWNLANQDEVACAST-RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGV- 235 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~-d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~- 235 (489)
+.+.+|+|+++.++.+... ++..|.+||+..+.. ..+ ..+...+...+|+|+|+.++++.+.++.
T Consensus 204 v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~---~~l----------~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 270 (435)
T PRK05137 204 VLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR---ELV----------GNFPGMTFAPRFSPDGRKVVMSLSQGGNT 270 (435)
T ss_pred eEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE---EEe----------ecCCCcccCcEECCCCCEEEEEEecCCCc
Confidence 8889999999755554322 126899999943311 111 2234466788999999944556666665
Q ss_pred -EEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-C--CeEEEEEcCCCcccceeecCCccCCCCeeEEEeC
Q 037120 236 -VNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-H--GSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLA 311 (489)
Q Consensus 236 -i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-d--g~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~ 311 (489)
|++||+.+++ .. .+..+........|+|+|+.++.++. + ..|++||+.+++. ..+...... +....|+
T Consensus 271 ~Iy~~d~~~~~--~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~----~~~~~~S 342 (435)
T PRK05137 271 DIYTMDLRSGT--TT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGR----YSTPVWS 342 (435)
T ss_pred eEEEEECCCCc--eE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCc----ccCeEEC
Confidence 7777988765 22 34445556678999999998887765 3 3688888776543 333322323 5556777
Q ss_pred CCCccee
Q 037120 312 SMLEKIG 318 (489)
Q Consensus 312 ~~~~~i~ 318 (489)
|+|+.++
T Consensus 343 pdG~~ia 349 (435)
T PRK05137 343 PRGDLIA 349 (435)
T ss_pred CCCCEEE
Confidence 7776664
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3e-11 Score=126.68 Aligned_cols=162 Identities=15% Similarity=0.257 Sum_probs=122.7
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
+.|.++.=+|...+.++|+.||.|++|.+.....+..- .. .+. .. |+.+.|+.+|. .+..+..
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~------rt------~g~-s~---vtr~~f~~qGn-k~~i~d~ 2271 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCF------RT------AGN-SR---VTRSRFNHQGN-KFGIVDG 2271 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEe------ec------cCc-ch---hhhhhhcccCC-ceeeecc
Confidence 56889998999999999999999999999875444321 00 111 22 88899999986 4444444
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe---CCCcEEEEECCCCCcC-ceeec
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD---THGVVNIWDRRVGVLP-SLELS 252 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~~-~~~~~ 252 (489)
| |.+.+|.+. +. .......|....++..|-. . .+++++ .++.+.+||....... ++.
T Consensus 2272 d-g~l~l~q~~-----pk--------~~~s~qchnk~~~Df~Fi~--s-~~~tag~s~d~~n~~lwDtl~~~~~s~v~-- 2332 (2439)
T KOG1064|consen 2272 D-GDLSLWQAS-----PK--------PYTSWQCHNKALSDFRFIG--S-LLATAGRSSDNRNVCLWDTLLPPMNSLVH-- 2332 (2439)
T ss_pred C-CceeecccC-----Cc--------ceeccccCCccccceeeee--h-hhhccccCCCCCcccchhcccCcccceee--
Confidence 5 999999993 11 1122367999999999985 4 677776 6789999998765433 443
Q ss_pred cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCccccee
Q 037120 253 TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPF 294 (489)
Q Consensus 253 ~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~ 294 (489)
..|.+.++++++-|..+.+++||.+|.|++||++..+..+.+
T Consensus 2333 ~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~ 2374 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTF 2374 (2439)
T ss_pred eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHh
Confidence 699999999999999999999999999999999976544443
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.1e-10 Score=98.21 Aligned_cols=192 Identities=13% Similarity=0.033 Sum_probs=130.3
Q ss_pred CCceeEEEEC---CCCc-EEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 96 KPGISALDFD---CKGI-YLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 96 ~~~V~~~~fs---~~g~-~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
..++..+.|. .+|. .|+-+-.+|.|.+|......... .+.+.......... ..++.|++.+..++
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~--------~L~~ls~~ki~~~~---~lslD~~~~~~~i~ 137 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSV--------HLRGLSSKKISVVE---ALSLDISTSGTKIF 137 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeee--------eecccchhhhhhee---eeEEEeeccCceEE
Confidence 3445555554 2455 56777789999999776532211 11111111111111 45788999887544
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++-+ + |.+.+-+. ....+...+.+ .+|.-.++..+|+...++++.+|+.|+.+..||+|.++.-..+.
T Consensus 138 vs~s-~-G~~~~v~~------t~~~le~vq~w----k~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n 205 (339)
T KOG0280|consen 138 VSDS-R-GSISGVYE------TEMVLEKVQTW----KVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHN 205 (339)
T ss_pred EEcC-C-CcEEEEec------ceeeeeecccc----cccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeec
Confidence 4444 4 88885554 22344444444 88999999999999998899999999999999999665444555
Q ss_pred ccCCCCceeEEEEee-cCCEEEEEeCCCeEEEEEcCC-CcccceeecCCccCCCCeeEEEeCCCCc
Q 037120 252 STGSHGTLNSIQLHA-ENQIIFAAGKHGSIYLWDLRG-GRTSAPFHNHKEVCHLPLTSLKLASMLE 315 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p-~~~~l~~~~~dg~i~lwd~~~-~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 315 (489)
..-|...|.++.-+| ...++++|+.|-.|++||.|+ ++.+..-.. .+. |..+.++|...
T Consensus 206 ~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v-~GG----VWRi~~~p~~~ 266 (339)
T KOG0280|consen 206 SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKV-GGG----VWRIKHHPEIF 266 (339)
T ss_pred ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCcc-ccc----eEEEEecchhh
Confidence 668889999998887 466888888899999999996 444443332 344 89999888654
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.1e-09 Score=104.39 Aligned_cols=113 Identities=15% Similarity=0.159 Sum_probs=70.9
Q ss_pred eeEEEeeCCCCCEEEEEecC-CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcE
Q 037120 158 LDAVRWNLANQDEVACASTR-SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVV 236 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d-~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i 236 (489)
+.+.+|+|+++.++++...+ ...|.+||+..+.. ..+ ......+...+|+|||..++++.+.+|..
T Consensus 198 v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~---~~l----------~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 264 (427)
T PRK02889 198 IISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR---RVV----------ANFKGSNSAPAWSPDGRTLAVALSRDGNS 264 (427)
T ss_pred cccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE---EEe----------ecCCCCccceEECCCCCEEEEEEccCCCc
Confidence 77899999997555444322 14699999943311 111 11122456789999999444567778876
Q ss_pred EEEEC--CCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcC
Q 037120 237 NIWDR--RVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLR 286 (489)
Q Consensus 237 ~iwd~--~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~ 286 (489)
.||.+ ..+. .+.+..+........|+|||+.++.++. +|...||.+.
T Consensus 265 ~Iy~~d~~~~~---~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~ 314 (427)
T PRK02889 265 QIYTVNADGSG---LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMP 314 (427)
T ss_pred eEEEEECCCCC---cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEE
Confidence 66654 4433 2233444555667899999998887765 5666666553
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.9e-09 Score=106.24 Aligned_cols=115 Identities=14% Similarity=0.165 Sum_probs=74.1
Q ss_pred eeEEEeeCCCCCEEEEEecC-CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCC--
Q 037120 158 LDAVRWNLANQDEVACASTR-SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG-- 234 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d-~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg-- 234 (489)
+.+.+|+|+++.++++...+ ...|.+||+..+.. ..+ ..+.......+|+|+|+.++++.+.+|
T Consensus 206 v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~---~~l----------~~~~g~~~~~~~SpDG~~l~~~~s~~g~~ 272 (433)
T PRK04922 206 ILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR---ELV----------ASFRGINGAPSFSPDGRRLALTLSRDGNP 272 (433)
T ss_pred cccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE---EEe----------ccCCCCccCceECCCCCEEEEEEeCCCCc
Confidence 77899999997555443221 24799999943311 111 112223457899999994445666665
Q ss_pred cEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-CCe--EEEEEcCCC
Q 037120 235 VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HGS--IYLWDLRGG 288 (489)
Q Consensus 235 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~--i~lwd~~~~ 288 (489)
.|++||+.+++ .. .+..+.......+|+|+|+.++.++. +|. |+++|+.++
T Consensus 273 ~Iy~~d~~~g~--~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g 326 (433)
T PRK04922 273 EIYVMDLGSRQ--LT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGG 326 (433)
T ss_pred eEEEEECCCCC--eE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 59999998876 22 33344455568899999999888775 444 556666554
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-08 Score=88.52 Aligned_cols=145 Identities=14% Similarity=0.212 Sum_probs=100.1
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCCcE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THGVV 236 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg~i 236 (489)
|.+|.+.++ .++..- .+.|.||...... +.+..... .....++.+++=+.... +|+.=| .-|.|
T Consensus 97 I~~V~l~r~---riVvvl--~~~I~VytF~~n~----k~l~~~et-----~~NPkGlC~~~~~~~k~-~LafPg~k~Gqv 161 (346)
T KOG2111|consen 97 IKAVKLRRD---RIVVVL--ENKIYVYTFPDNP----KLLHVIET-----RSNPKGLCSLCPTSNKS-LLAFPGFKTGQV 161 (346)
T ss_pred eeeEEEcCC---eEEEEe--cCeEEEEEcCCCh----hheeeeec-----ccCCCceEeecCCCCce-EEEcCCCccceE
Confidence 888999887 556666 4799999984321 22222221 11223344443222222 333333 66999
Q ss_pred EEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCe-EEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCc
Q 037120 237 NIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGS-IYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLE 315 (489)
Q Consensus 237 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~-i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 315 (489)
+|-|+...+...-..+.+|.+.|.|++++-+|..+++++..|+ |||||..+|..+.++..-... ..|.+++|+|+..
T Consensus 162 Qi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~--A~iy~iaFSp~~s 239 (346)
T KOG2111|consen 162 QIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDR--ADIYCIAFSPNSS 239 (346)
T ss_pred EEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCch--heEEEEEeCCCcc
Confidence 9999998664212356799999999999999999999999776 899999999998888743322 4589999999998
Q ss_pred ceee
Q 037120 316 KIGT 319 (489)
Q Consensus 316 ~i~~ 319 (489)
.++-
T Consensus 240 ~Lav 243 (346)
T KOG2111|consen 240 WLAV 243 (346)
T ss_pred EEEE
Confidence 8864
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-08 Score=101.17 Aligned_cols=116 Identities=14% Similarity=0.111 Sum_probs=73.8
Q ss_pred eeEEEeeCCCCCEEEEEecC-CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCc-
Q 037120 158 LDAVRWNLANQDEVACASTR-SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGV- 235 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d-~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~- 235 (489)
+.+..|+|+++.++.+...+ ...|.+||+..+. . ..+. .+.+ .....+|+|+|+.++++.+.++.
T Consensus 220 ~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~--~-~~lt-------~~~g---~~~~~~wSPDG~~La~~~~~~g~~ 286 (448)
T PRK04792 220 LMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV--R-EKVT-------SFPG---INGAPRFSPDGKKLALVLSKDGQP 286 (448)
T ss_pred ccCceECCCCCEEEEEEecCCCcEEEEEECCCCC--e-EEec-------CCCC---CcCCeeECCCCCEEEEEEeCCCCe
Confidence 77799999998665554433 1358888884321 1 1111 1122 23467999999944455666665
Q ss_pred -EEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-CC--eEEEEEcCCCc
Q 037120 236 -VNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HG--SIYLWDLRGGR 289 (489)
Q Consensus 236 -i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg--~i~lwd~~~~~ 289 (489)
|++||+.+++ . +.+..+.......+|+|+|+.++..+. ++ .|+++|+.+++
T Consensus 287 ~Iy~~dl~tg~--~-~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~ 341 (448)
T PRK04792 287 EIYVVDIATKA--L-TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK 341 (448)
T ss_pred EEEEEECCCCC--e-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 7778888765 2 233344455678899999998877765 33 57777777665
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.8e-10 Score=104.26 Aligned_cols=175 Identities=11% Similarity=0.141 Sum_probs=129.5
Q ss_pred CCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEee------C-------------
Q 037120 105 DCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWN------L------------- 165 (489)
Q Consensus 105 s~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~------~------------- 165 (489)
+|.+.++|..+.||.++|||....+.... +.+ ..|...- .++..|. |
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e--------~~p----~~~~s~t--~~~~~w~L~~~~s~~k~~~~~~~~~~s 67 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQE--------FAP----IASLSGT--CTYTKWGLSADYSPMKWLSLEKAKKAS 67 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeee--------ecc----chhccCc--ceeEEEEEEeccchHHHHhHHHHhhcc
Confidence 46678999999999999999988544332 111 1121110 3334442 1
Q ss_pred CCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 037120 166 ANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGV 245 (489)
Q Consensus 166 ~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 245 (489)
.+..+++-|... |.|.+|++..+ ++- +.....+|.+.|+++.++.+-. .|.+++.|+.+..|+.....
T Consensus 68 ~~t~~lvlgt~~-g~v~~ys~~~g-----~it-----~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~ 135 (541)
T KOG4547|consen 68 LDTSMLVLGTPQ-GSVLLYSVAGG-----EIT-----AKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKV 135 (541)
T ss_pred CCceEEEeecCC-ccEEEEEecCC-----eEE-----EEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccce
Confidence 123356666666 99999999433 111 1111267999999999998777 99999999999999998866
Q ss_pred cCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCC
Q 037120 246 LPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASM 313 (489)
Q Consensus 246 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 313 (489)
.+.........+.+++.+||+..+++++ +.|++||+.+.+.+..|.+|.+. |++++|-.+
T Consensus 136 --~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~----v~t~~f~~~ 195 (541)
T KOG4547|consen 136 --IIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSP----VRTLSFTTL 195 (541)
T ss_pred --eeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcc----eEEEEEEEe
Confidence 4555556677889999999999998887 58999999999999999999977 999999877
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-09 Score=107.20 Aligned_cols=159 Identities=14% Similarity=0.061 Sum_probs=104.4
Q ss_pred CCceeEEEECCCCcEEEEEecC---CeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 96 KPGISALDFDCKGIYLVSATRS---GCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~~d---g~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
...+...+|+|||++||.++.+ ..|++||+.+...... ..+... +.+++|+|++..+++
T Consensus 189 ~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~---------------~~~~~~---~~~~~~spDg~~l~~ 250 (417)
T TIGR02800 189 REPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKV---------------ASFPGM---NGAPAFSPDGSKLAV 250 (417)
T ss_pred CCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEe---------------ecCCCC---ccceEECCCCCEEEE
Confidence 3458888999999999988754 4799999987432210 111112 556899999986766
Q ss_pred EEecC-CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCC--cEEEEECCCCCcCc
Q 037120 173 CASTR-SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THG--VVNIWDRRVGVLPS 248 (489)
Q Consensus 173 s~~~d-~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg--~i~iwd~~~~~~~~ 248 (489)
+.+.+ ...|.+||+..... .. +..+........|+|+++ .|+.++ .++ .|+++|+.+++ .
T Consensus 251 ~~~~~~~~~i~~~d~~~~~~---~~----------l~~~~~~~~~~~~s~dg~-~l~~~s~~~g~~~iy~~d~~~~~--~ 314 (417)
T TIGR02800 251 SLSKDGNPDIYVMDLDGKQL---TR----------LTNGPGIDTEPSWSPDGK-SIAFTSDRGGSPQIYMMDADGGE--V 314 (417)
T ss_pred EECCCCCccEEEEECCCCCE---EE----------CCCCCCCCCCEEECCCCC-EEEEEECCCCCceEEEEECCCCC--E
Confidence 66544 13588888743210 10 122333445678999998 665554 333 57888887655 2
Q ss_pred eeeccCCCCceeEEEEeecCCEEEEEeCCC---eEEEEEcCCCc
Q 037120 249 LELSTGSHGTLNSIQLHAENQIIFAAGKHG---SIYLWDLRGGR 289 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg---~i~lwd~~~~~ 289 (489)
. .+..+...+....|+|+|++++.++.++ .|.+||+.++.
T Consensus 315 ~-~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 315 R-RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred E-EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 2 2333455677889999999999888765 78899988743
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-10 Score=106.18 Aligned_cols=195 Identities=17% Similarity=0.182 Sum_probs=133.9
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..|..+.|-|..-+|++++..|.++.-|+.++..+... .. -.+. +..++-+|-+. ++-.|..
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~--------~t------~~G~---~~vm~qNP~Na-Vih~Ghs 271 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASI--------RT------GAGR---TDVMKQNPYNA-VIHLGHS 271 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechhhhhHHH--------Hc------cCCc---cchhhcCCccc-eEEEcCC
Confidence 45888999999999999999999999999986665531 11 1111 66688899875 7777777
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~ 256 (489)
+ |+|.+|..... .....+..|.++|.+|++.++|. +++|++.|..|+|||+|.-..+ . .... .
T Consensus 272 n-GtVSlWSP~sk------------ePLvKiLcH~g~V~siAv~~~G~-YMaTtG~Dr~~kIWDlR~~~ql-~-t~~t-p 334 (545)
T KOG1272|consen 272 N-GTVSLWSPNSK------------EPLVKILCHRGPVSSIAVDRGGR-YMATTGLDRKVKIWDLRNFYQL-H-TYRT-P 334 (545)
T ss_pred C-ceEEecCCCCc------------chHHHHHhcCCCcceEEECCCCc-EEeecccccceeEeeecccccc-c-eeec-C
Confidence 7 99999988321 12222356999999999999999 9999999999999999986532 1 2211 2
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEE-cCCCc--ccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeE
Q 037120 257 GTLNSIQLHAENQIIFAAGKHGSIYLWD-LRGGR--TSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHS 333 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~dg~i~lwd-~~~~~--~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~ 333 (489)
.+...+++|..| +++.+....|.||- .-.+. .-..+..|.-. .+|..|.|+|-...++- .+...+++
T Consensus 335 ~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~--~~V~~l~FcP~EDvLGI------GH~~G~ts 404 (545)
T KOG1272|consen 335 HPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCG--GPVEDLRFCPYEDVLGI------GHAGGITS 404 (545)
T ss_pred CCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccC--cccccceeccHHHeeec------cccCCcee
Confidence 456677887665 45556666899994 32222 11222233322 46999999998776652 34445555
Q ss_pred EEe
Q 037120 334 IDL 336 (489)
Q Consensus 334 ~~~ 336 (489)
|-+
T Consensus 405 ilV 407 (545)
T KOG1272|consen 405 ILV 407 (545)
T ss_pred Eec
Confidence 544
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.7e-09 Score=99.44 Aligned_cols=270 Identities=14% Similarity=0.154 Sum_probs=140.5
Q ss_pred CEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCc
Q 037120 169 DEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPS 248 (489)
Q Consensus 169 ~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 248 (489)
++++....++|.|.+.|... .+.+.... .+ ...-..+.|+||++ +++.++.||.|.++|+.+.+ .
T Consensus 6 ~l~~V~~~~~~~v~viD~~t-----~~~~~~i~------~~-~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~--~ 70 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGAT-----NKVVARIP------TG-GAPHAGLKFSPDGR-YLYVANRDGTVSVIDLATGK--V 70 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT------SEEEEEE-------S-TTEEEEEE-TT-SS-EEEEEETTSEEEEEETTSSS--E
T ss_pred cEEEEEecCCCEEEEEECCC-----CeEEEEEc------CC-CCceeEEEecCCCC-EEEEEcCCCeEEEEECCccc--E
Confidence 35544443349999999832 23333322 11 11234577999999 78888899999999999977 5
Q ss_pred eeeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcccceeecCCcc---CCCCeeEEEeCCCCc-ceeecccc
Q 037120 249 LELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFHNHKEV---CHLPLTSLKLASMLE-KIGTLKAQ 323 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~---~~~~v~~l~~~~~~~-~i~~~~~~ 323 (489)
+..... ......++++++|++++++.. ++.+.++|.++.+.++.+...... ....+.++..+|... ++..++..
T Consensus 71 v~~i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~ 149 (369)
T PF02239_consen 71 VATIKV-GGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDT 149 (369)
T ss_dssp EEEEE--SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTT
T ss_pred EEEEec-CCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccC
Confidence 555443 334678999999999999876 999999999999888777643211 012367777777765 44333211
Q ss_pred ce-----------------eeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccC-
Q 037120 324 SK-----------------IVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLH- 385 (489)
Q Consensus 324 ~~-----------------~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 385 (489)
.. ..........++|+++|+++.........+++..++........ .-.+.+- ....+.
T Consensus 150 ~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~--g~~p~~~-~~~~~ph 226 (369)
T PF02239_consen 150 GEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDT--GKKPHPG-PGANFPH 226 (369)
T ss_dssp TEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE---SSSBEET-TEEEEEE
T ss_pred CeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeec--ccccccc-ccccccC
Confidence 11 11233566789999999888765555334444433322221100 0000000 000000
Q ss_pred -CCcceeecCC-cEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeE
Q 037120 386 -LRKPSWLSTN-SIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTI 463 (489)
Q Consensus 386 -~~~~~~~~~~-~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i 463 (489)
...+.|...+ +.++++.-....+.+||...- +.++.+. ...++ .-+..||+++++
T Consensus 227 p~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w----------kvv~~I~------------~~G~g-lFi~thP~s~~v 283 (369)
T PF02239_consen 227 PGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW----------KVVKTIP------------TQGGG-LFIKTHPDSRYV 283 (369)
T ss_dssp TTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT----------SEEEEEE-------------SSSS---EE--TT-SEE
T ss_pred CCcceEEeeccccceecccccCCccccchhhcC----------eEEEEEE------------CCCCc-ceeecCCCCccE
Confidence 0112232221 112212122234445666655 6666665 44445 778999999988
Q ss_pred Eec----cCcceeEEEecccc
Q 037120 464 VAG----TKNSSLLVVSQKQQ 480 (489)
Q Consensus 464 ~sg----s~dg~i~v~~~~~~ 480 (489)
.+. ..++.|.|+..+..
T Consensus 284 wvd~~~~~~~~~v~viD~~tl 304 (369)
T PF02239_consen 284 WVDTFLNPDADTVQVIDKKTL 304 (369)
T ss_dssp EEE-TT-SSHT-EEEEECCGT
T ss_pred EeeccCCCCCceEEEEECcCc
Confidence 877 56789999887765
|
... |
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1e-09 Score=101.22 Aligned_cols=276 Identities=15% Similarity=0.174 Sum_probs=165.1
Q ss_pred ccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCC-cEE
Q 037120 149 LLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT-SRL 227 (489)
Q Consensus 149 ~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l 227 (489)
..|.+. |..|.|+..+. .+++++.| ..|.+||....... ... -.+|...|-...|.|... ..+
T Consensus 139 ~~H~Gc---VntV~FN~~Gd-~l~SgSDD-~~vv~WdW~~~~~~-------l~f----~SGH~~NvfQaKFiP~s~d~ti 202 (559)
T KOG1334|consen 139 NKHKGC---VNTVHFNQRGD-VLASGSDD-LQVVVWDWVSGSPK-------LSF----ESGHCNNVFQAKFIPFSGDRTI 202 (559)
T ss_pred cCCCCc---cceeeecccCc-eeeccCcc-ceEEeehhhccCcc-------ccc----ccccccchhhhhccCCCCCcCc
Confidence 345555 77899999986 88999988 99999999433211 111 177888888888888543 379
Q ss_pred EEEeCCCcEEEEECCCCCcC-ceeeccCCCCceeEEEEeecCCE-EEEEeCCCeEEEEEcCCCcccceeecCCccCCCCe
Q 037120 228 IASDTHGVVNIWDRRVGVLP-SLELSTGSHGTLNSIQLHAENQI-IFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPL 305 (489)
Q Consensus 228 ~s~s~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~-l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v 305 (489)
++++.||.|++=.+-..... -.+....|.+.|..++.-|+..+ ++++|.|+.+.-+|++....-..+......
T Consensus 203 ~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~----- 277 (559)
T KOG1334|consen 203 VTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREAD----- 277 (559)
T ss_pred eeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccC-----
Confidence 99999999998766543322 23345589999999999998776 566677999999999987652222211000
Q ss_pred eEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccce------eeecCCCCCCcCCCCc
Q 037120 306 TSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRV------SHVHCPPPAWLSDSNN 379 (489)
Q Consensus 306 ~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 379 (489)
.. ..-....++..|...+.++.+..+.+.++.+....+. ...+|+......+
T Consensus 278 --------~~-----------~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~--- 335 (559)
T KOG1334|consen 278 --------EK-----------ERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDD--- 335 (559)
T ss_pred --------Cc-----------cceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccC---
Confidence 00 0012345556666654444433333333333322221 1223332221111
Q ss_pred cccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCC-Ceeecc-CcccchhhHhhhhcccCCcccCCC--ceEEEE
Q 037120 380 SADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSS-PSHVDY-NEDIESLSERTKLKKENRFVPLSE--GVTACV 455 (489)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~--~V~~va 455 (489)
...+..+.|+.+++.++++ -.|-.|+++.-.-+... +..... ...++. .+.||.. .|-+|-
T Consensus 336 ---~v~ITgl~Ysh~~sElLaS-YnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~-----------vYKGHrN~~TVKgVN 400 (559)
T KOG1334|consen 336 ---PVNITGLVYSHDGSELLAS-YNDEDIYLFNKSMGDGSEPDPSSPREQYVKR-----------VYKGHRNSRTVKGVN 400 (559)
T ss_pred ---cccceeEEecCCccceeee-ecccceEEeccccccCCCCCCCcchhhccch-----------hhcccccccccceee
Confidence 1233445566666776666 57778999954433110 000000 011111 1347854 466666
Q ss_pred e-eCCCCeEEeccCcceeEEEecccccc
Q 037120 456 T-HPLNNTIVAGTKNSSLLVVSQKQQCT 482 (489)
Q Consensus 456 ~-~p~~~~i~sgs~dg~i~v~~~~~~~~ 482 (489)
| -|...++++||.=|.|+||.+|...+
T Consensus 401 FfGPrsEyVvSGSDCGhIFiW~K~t~ei 428 (559)
T KOG1334|consen 401 FFGPRSEYVVSGSDCGHIFIWDKKTGEI 428 (559)
T ss_pred eccCccceEEecCccceEEEEecchhHH
Confidence 6 57778999999999999998876544
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=7e-10 Score=107.22 Aligned_cols=183 Identities=21% Similarity=0.366 Sum_probs=133.8
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCC--CCEEEEE
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLAN--QDEVACA 174 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~--~~~l~s~ 174 (489)
.++.++..+|.|+-+|.++.-| +.+-|+... ..+ . ...|....+.|-.+.|+|.. ..-+++.
T Consensus 25 ~~~~a~si~p~grdi~lAsr~g-l~i~dld~p-------------~~p-p-r~l~h~tpw~vad~qws~h~a~~~wiVst 88 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQG-LYIIDLDDP-------------FTP-P-RWLHHITPWQVADVQWSPHPAKPYWIVST 88 (1081)
T ss_pred CcccceeeccccchhhhhhhcC-eEEEeccCC-------------CCC-c-eeeeccCcchhcceecccCCCCceeEEec
Confidence 4688899999999999999877 556677761 111 1 13344445567789998764 3345555
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccC
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 254 (489)
+ ...-.+|++....... ....+.+|+.+|+++-|+|+.+..+++++.|-.+..||+++...+......-
T Consensus 89 s--~qkaiiwnlA~ss~~a---------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w 157 (1081)
T KOG0309|consen 89 S--NQKAIIWNLAKSSSNA---------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSW 157 (1081)
T ss_pred C--cchhhhhhhhcCCccc---------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecc
Confidence 5 3577899995443331 1112489999999999999999999999999999999999987764433323
Q ss_pred CCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeC
Q 037120 255 SHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLA 311 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~ 311 (489)
......++|+-....+++.+..+.|++||++.|.. +..+++|... |..+.|.
T Consensus 158 -~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~----vn~~~fn 210 (1081)
T KOG0309|consen 158 -RSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSS----VNSIDFN 210 (1081)
T ss_pred -cccCceeeecccCcchhhhccCCceEEEeccCCCcceEEeccccee----eehHHHh
Confidence 34567899999888888888888999999999765 7777777655 6666554
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.7e-07 Score=80.89 Aligned_cols=224 Identities=11% Similarity=0.059 Sum_probs=134.4
Q ss_pred CCCceeEEEECCCCcEEEEEec---CCeEEEEeCCCc--ccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCC
Q 037120 95 GKPGISALDFDCKGIYLVSATR---SGCLTVHDFESL--YYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQD 169 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~---dg~i~vwd~~~~--~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~ 169 (489)
.....+=++|+|+++.|-++-. +|.|..|.++.. +....+ +. ...+.+-+.++++++++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln----------~~-----~~~g~~p~yvsvd~~g~- 101 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLN----------RQ-----TLPGSPPCYVSVDEDGR- 101 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEee----------cc-----ccCCCCCeEEEECCCCC-
Confidence 3345788999999988887765 478888888751 211110 00 00111135599999987
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecC-Cc----ccCeeEEEEecCCCcEEEEEe-CCCcEEEEECCC
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGS-DV----QKGLSDLAFSAVNTSRLIASD-THGVVNIWDRRV 243 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~h----~~~v~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~ 243 (489)
+++++....|.|.++-++... ..... .....++.. .| +.-+....+.|+++ +|++.+ .--.|.+|++..
T Consensus 102 ~vf~AnY~~g~v~v~p~~~dG-~l~~~---v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~-~l~v~DLG~Dri~~y~~~d 176 (346)
T COG2706 102 FVFVANYHSGSVSVYPLQADG-SLQPV---VQVVKHTGSGPHERQESPHVHSANFTPDGR-YLVVPDLGTDRIFLYDLDD 176 (346)
T ss_pred EEEEEEccCceEEEEEcccCC-ccccc---eeeeecCCCCCCccccCCccceeeeCCCCC-EEEEeecCCceEEEEEccc
Confidence 666666666999999996531 11111 111111111 11 11178889999999 777776 344788999997
Q ss_pred CCcCce-eeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCC-cccceeecCCc---cC--CCCeeEEEeCCCCc
Q 037120 244 GVLPSL-ELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGG-RTSAPFHNHKE---VC--HLPLTSLKLASMLE 315 (489)
Q Consensus 244 ~~~~~~-~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~-~~~~~~~~~~~---~~--~~~v~~l~~~~~~~ 315 (489)
+..... .........-..|.|+|++++.++.+. +++|-+|..... ..+..++.+.. .. .....++.+++||+
T Consensus 177 g~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGr 256 (346)
T COG2706 177 GKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGR 256 (346)
T ss_pred CccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCC
Confidence 653311 111133456688999999999999999 999999999873 22333222110 00 12256777777877
Q ss_pred ceeeccccceeeccceeEEEeCCCCCeE
Q 037120 316 KIGTLKAQSKIVSQEIHSIDLDPSCSYQ 343 (489)
Q Consensus 316 ~i~~~~~~~~~~~~~i~~~~~~p~~~~~ 343 (489)
++....... ..|....++|++..+
T Consensus 257 FLYasNRg~----dsI~~f~V~~~~g~L 280 (346)
T COG2706 257 FLYASNRGH----DSIAVFSVDPDGGKL 280 (346)
T ss_pred EEEEecCCC----CeEEEEEEcCCCCEE
Confidence 775332221 245566666665543
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-09 Score=109.45 Aligned_cols=151 Identities=17% Similarity=0.232 Sum_probs=120.5
Q ss_pred EEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCE
Q 037120 101 ALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNV 180 (489)
Q Consensus 101 ~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~ 180 (489)
-+-++++.-++++|+.-+.|.+|+... -..+....+|.+. |.++.|+.++. .+++.++| .+
T Consensus 138 ~~g~s~~~~~i~~gsv~~~iivW~~~~--------------dn~p~~l~GHeG~---iF~i~~s~dg~-~i~s~SdD-Rs 198 (967)
T KOG0974|consen 138 IIGDSAEELYIASGSVFGEIIVWKPHE--------------DNKPIRLKGHEGS---IFSIVTSLDGR-YIASVSDD-RS 198 (967)
T ss_pred EEeccCcEEEEEeccccccEEEEeccc--------------cCCcceecccCCc---eEEEEEccCCc-EEEEEecC-cc
Confidence 445677888999999999999999873 1111245788888 88899999985 88899988 99
Q ss_pred EEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC-Cce
Q 037120 181 VSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH-GTL 259 (489)
Q Consensus 181 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~-~~v 259 (489)
+++|++.... .+. .+.-+|+..|+.+.|.|. .++|++.|.+.++|+..-.. ++.+..|. ..|
T Consensus 199 iRlW~i~s~~-----~~~------~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~~---l~~y~~h~g~~i 261 (967)
T KOG0974|consen 199 IRLWPIDSRE-----VLG------CTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNGTQ---LEVYDEHSGKGI 261 (967)
T ss_pred eeeeeccccc-----ccC------cccccccceeEEEEeccc---eeEEeccceEEEEEecccce---ehhhhhhhhcce
Confidence 9999994432 211 234789999999999986 69999999999999766433 33555554 568
Q ss_pred eEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 037120 260 NSIQLHAENQIIFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 260 ~~~~~~p~~~~l~~~~~dg~i~lwd~~~ 287 (489)
..++..+....+++++.||.+++||+..
T Consensus 262 w~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 262 WKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred eEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 8999999999999999999999999875
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=9.1e-08 Score=94.60 Aligned_cols=116 Identities=12% Similarity=0.141 Sum_probs=74.4
Q ss_pred eeEEEeeCCCCCEEEEEecC-CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCC--
Q 037120 158 LDAVRWNLANQDEVACASTR-SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG-- 234 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d-~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg-- 234 (489)
+...+|+|+++.++++...+ ...|.+||+..+.. ..+ ......+...+|+|+|+.++++.+.+|
T Consensus 201 ~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~---~~l----------~~~~g~~~~~~~SpDG~~la~~~~~~g~~ 267 (430)
T PRK00178 201 ILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR---EQI----------TNFEGLNGAPAWSPDGSKLAFVLSKDGNP 267 (430)
T ss_pred eeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE---EEc----------cCCCCCcCCeEECCCCCEEEEEEccCCCc
Confidence 78899999997555554332 13688899843311 111 111123446899999993444555555
Q ss_pred cEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-CC--eEEEEEcCCCc
Q 037120 235 VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HG--SIYLWDLRGGR 289 (489)
Q Consensus 235 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg--~i~lwd~~~~~ 289 (489)
.|++||+.+++ .. .+..+........|+|+|+.++..+. +| .|+++|+.+++
T Consensus 268 ~Iy~~d~~~~~--~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~ 322 (430)
T PRK00178 268 EIYVMDLASRQ--LS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGR 322 (430)
T ss_pred eEEEEECCCCC--eE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 58888998865 22 33344555667899999998877765 33 57777877665
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.6e-09 Score=96.52 Aligned_cols=167 Identities=14% Similarity=0.114 Sum_probs=110.0
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE-EecC
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC-ASTR 177 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s-~~~d 177 (489)
+..+.+++++++||++..+....++++.......+ +.... .. ... -+++.|..+....+++ ...|
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~k--------l~~~~--~v-~~~---~~ai~~~~~~~sv~v~dkagD 130 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAK--------LLDVS--CV-PKR---PTAISFIREDTSVLVADKAGD 130 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcce--------eeeEe--ec-ccC---cceeeeeeccceEEEEeecCC
Confidence 55667889999999999999988888876222010 00000 00 001 2223443333333332 2222
Q ss_pred CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce-eeccCCC
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL-ELSTGSH 256 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~h~ 256 (489)
...+.+|.+..+. .. ...||-.-+++++|+||++ +|+++..|..|++-.....- .+ ....+|+
T Consensus 131 ~~~~di~s~~~~~---------~~----~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f--~IesfclGH~ 194 (390)
T KOG3914|consen 131 VYSFDILSADSGR---------CE----PILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATF--VIESFCLGHK 194 (390)
T ss_pred ceeeeeecccccC---------cc----hhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCccc--chhhhccccH
Confidence 2455555542111 11 1278999999999999999 99999999999987665432 22 2334899
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeec
Q 037120 257 GTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
..|..++.-++. .|+++|.|++|++||+++|+++.++..
T Consensus 195 eFVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 195 EFVSTISLTDNY-LLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred hheeeeeeccCc-eeeecCCCCcEEEEecccCCcccccch
Confidence 999999997655 489999999999999999999877654
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.2e-08 Score=102.62 Aligned_cols=196 Identities=16% Similarity=0.151 Sum_probs=130.3
Q ss_pred EEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 037120 161 VRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWD 240 (489)
Q Consensus 161 v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd 240 (489)
..+..... .++.+..+ +.+.+||......-. ++....+.. + ....-+-++++.- ++++|+.-+.|.+|+
T Consensus 93 ~~l~~e~k-~i~l~~~~-ns~~i~d~~~~~~~~-~i~~~er~~---l----~~~~~~g~s~~~~-~i~~gsv~~~iivW~ 161 (967)
T KOG0974|consen 93 AKLFEENK-KIALVTSR-NSLLIRDSKNSSVLS-KIQSDERCT---L----YSSLIIGDSAEEL-YIASGSVFGEIIVWK 161 (967)
T ss_pred cchhhhcc-eEEEEEcC-ceEEEEecccCceeh-hcCCCceEE---E----EeEEEEeccCcEE-EEEeccccccEEEEe
Confidence 33444444 44444445 899999984321110 011111110 0 0111223344444 889999999999999
Q ss_pred CCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccc-eeecCCccCCCCeeEEEeCCCCcceee
Q 037120 241 RRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSA-PFHNHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 241 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
....+.+ . ...+|++.|.++.++-+|.++++.+.|.++|+|++.+.+.+. +.-+|.
T Consensus 162 ~~~dn~p-~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs--------------------- 218 (967)
T KOG0974|consen 162 PHEDNKP-I-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS--------------------- 218 (967)
T ss_pred ccccCCc-c-eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc---------------------
Confidence 9854433 3 466999999999999999999999999999999999866432 222222
Q ss_pred ccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEE
Q 037120 320 LKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYA 399 (489)
Q Consensus 320 ~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 399 (489)
..++.+.|. ...+
T Consensus 219 ---------aRvw~~~~~----------------------------------------------------------~n~i 231 (967)
T KOG0974|consen 219 ---------ARVWACCFL----------------------------------------------------------PNRI 231 (967)
T ss_pred ---------ceeEEEEec----------------------------------------------------------ccee
Confidence 222222221 1267
Q ss_pred EeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCC-CceEEEEeeCCCCeEEeccCcceeEEEecc
Q 037120 400 VGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLS-EGVTACVTHPLNNTIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 400 ~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~va~~p~~~~i~sgs~dg~i~v~~~~ 478 (489)
+++++|.+.++|+.... .+..+. +|. ..+..++.++....++|++.||.+.+|..+
T Consensus 232 ~t~gedctcrvW~~~~~-----------~l~~y~------------~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 232 ITVGEDCTCRVWGVNGT-----------QLEVYD------------EHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred EEeccceEEEEEecccc-----------eehhhh------------hhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 88899999999977654 344555 564 569999999999999999999999998766
Q ss_pred cc
Q 037120 479 QQ 480 (489)
Q Consensus 479 ~~ 480 (489)
..
T Consensus 289 ~r 290 (967)
T KOG0974|consen 289 GR 290 (967)
T ss_pred cc
Confidence 54
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.6e-08 Score=98.23 Aligned_cols=273 Identities=14% Similarity=0.147 Sum_probs=148.0
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
|..++.++....++++|+.| |+|++||.+...... .+.....++ ..-...+..+.+.+.+. .++.++.||.|+
T Consensus 1051 v~k~a~s~~~~s~FvsgS~D-GtVKvW~~~k~~~~~-~s~rS~lty----s~~~sr~~~vt~~~~~~-~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1051 VIKLAVSSEHTSLFVSGSDD-GTVKVWNLRKLEGEG-GSARSELTY----SPEGSRVEKVTMCGNGD-QFAVSTKDGSVR 1123 (1431)
T ss_pred ccceeecCCCCceEEEecCC-ceEEEeeehhhhcCc-ceeeeeEEE----eccCCceEEEEeccCCC-eEEEEcCCCeEE
Confidence 55688887776699999998 999999996543331 222333333 32346888999998888 899999999999
Q ss_pred EEECCCCC--cC---ceeeccCCC-Cc-eeEEEEeec-CC-EEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEE
Q 037120 238 IWDRRVGV--LP---SLELSTGSH-GT-LNSIQLHAE-NQ-IIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSL 308 (489)
Q Consensus 238 iwd~~~~~--~~---~~~~~~~h~-~~-v~~~~~~p~-~~-~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l 308 (489)
+.++...+ .. +.+....+. +. |..-+|... +. .++.+..-+.|..||+++...+..++.... ++.|+++
T Consensus 1124 ~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~--hG~vTSi 1201 (1431)
T KOG1240|consen 1124 VLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR--HGLVTSI 1201 (1431)
T ss_pred EEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc--ccceeEE
Confidence 99987621 11 222222222 22 333344332 33 566666688999999998665444432111 1225555
Q ss_pred EeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCc
Q 037120 309 KLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRK 388 (489)
Q Consensus 309 ~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (489)
+ .+|-+..++.++. .+|-.+||+.-+.... .|..... ...+.
T Consensus 1202 ~--------------------------idp~~~WlviGts-~G~l~lWDLRF~~~i~------sw~~P~~-----~~i~~ 1243 (1431)
T KOG1240|consen 1202 V--------------------------IDPWCNWLVIGTS-RGQLVLWDLRFRVPIL------SWEHPAR-----APIRH 1243 (1431)
T ss_pred E--------------------------ecCCceEEEEecC-CceEEEEEeecCceee------cccCccc-----CCcce
Confidence 4 4455544443332 3344455544332222 1211110 11122
Q ss_pred ceeecCC---cEEEEeec-CCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEE
Q 037120 389 PSWLSTN---SIYAVGSS-SDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIV 464 (489)
Q Consensus 389 ~~~~~~~---~~~l~sgs-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~ 464 (489)
+...|.. ...+.+|+ ..+.|-+|++.++......... .....++ ...+......++.-....+++.--+..+.
T Consensus 1244 v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s-~~~p~ls--~~~Ps~~~~kp~~~~~~~~~~~~~~~~~l 1320 (1431)
T KOG1240|consen 1244 VWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWAS-DGAPILS--YALPSNDARKPDSLAGISCGVCEKNGFLL 1320 (1431)
T ss_pred EEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcC-CCCcchh--hhcccccCCCCCcccceeeecccCCceee
Confidence 2222221 33344444 6789999999988221111111 0111111 01111101114444555566666677999
Q ss_pred eccCcceeEEEecccc
Q 037120 465 AGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 465 sgs~dg~i~v~~~~~~ 480 (489)
+||.|+.|+.|..-..
T Consensus 1321 tggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1321 TGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred ecCCccceeeccCCCc
Confidence 9999999999865433
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.5e-09 Score=99.71 Aligned_cols=183 Identities=18% Similarity=0.201 Sum_probs=120.8
Q ss_pred CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEec
Q 037120 108 GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIG 187 (489)
Q Consensus 108 g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~ 187 (489)
..+++.|+ ...|.=++++.+..... +...... +.++..++-. ++|++|+.+ |.|..||.+
T Consensus 146 cDly~~gs-g~evYRlNLEqGrfL~P--------~~~~~~~---------lN~v~in~~h-gLla~Gt~~-g~VEfwDpR 205 (703)
T KOG2321|consen 146 CDLYLVGS-GSEVYRLNLEQGRFLNP--------FETDSGE---------LNVVSINEEH-GLLACGTED-GVVEFWDPR 205 (703)
T ss_pred ccEEEeec-CcceEEEEccccccccc--------ccccccc---------ceeeeecCcc-ceEEecccC-ceEEEecch
Confidence 34444444 44577778887655542 2222222 8889999986 488888888 999999997
Q ss_pred cCCCCCceeeeecee-eeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEee
Q 037120 188 YISDEPVEVLKTRRS-VTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHA 266 (489)
Q Consensus 188 ~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p 266 (489)
....- ..+..... ..+++......|+++.|..+|- .++.|..+|.|.|||+|+.+ |.+..-.+...+|..+.|.+
T Consensus 206 ~ksrv--~~l~~~~~v~s~pg~~~~~svTal~F~d~gL-~~aVGts~G~v~iyDLRa~~-pl~~kdh~~e~pi~~l~~~~ 281 (703)
T KOG2321|consen 206 DKSRV--GTLDAASSVNSHPGGDAAPSVTALKFRDDGL-HVAVGTSTGSVLIYDLRASK-PLLVKDHGYELPIKKLDWQD 281 (703)
T ss_pred hhhhh--eeeecccccCCCccccccCcceEEEecCCce-eEEeeccCCcEEEEEcccCC-ceeecccCCccceeeecccc
Confidence 54321 22211111 1111222344599999998887 89999999999999999965 32212224456788999977
Q ss_pred cCC-EEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceee
Q 037120 267 ENQ-IIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 267 ~~~-~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
.+. ..++......++|||-.+|+....+.. .. .++.+++-|++.++..
T Consensus 282 ~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEp-t~----~lND~C~~p~sGm~f~ 330 (703)
T KOG2321|consen 282 TDQQNKVVSMDKRILKIWDECTGKPMASIEP-TS----DLNDFCFVPGSGMFFT 330 (703)
T ss_pred cCCCceEEecchHHhhhcccccCCceeeccc-cC----CcCceeeecCCceEEE
Confidence 632 234444567899999999998776664 22 2889999998877743
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.05 E-value=4.4e-07 Score=86.61 Aligned_cols=262 Identities=10% Similarity=0.104 Sum_probs=139.7
Q ss_pred eeEEEeeCCCCCEEEEEec---CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CC
Q 037120 158 LDAVRWNLANQDEVACAST---RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-TH 233 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~---d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~d 233 (489)
-..++++|++. +|.+... +.+.|..|++.... ..+...... .........++++|++. +|+++. .+
T Consensus 39 Ps~l~~~~~~~-~LY~~~e~~~~~g~v~~~~i~~~~----g~L~~~~~~----~~~g~~p~~i~~~~~g~-~l~vany~~ 108 (345)
T PF10282_consen 39 PSWLAVSPDGR-RLYVVNEGSGDSGGVSSYRIDPDT----GTLTLLNSV----PSGGSSPCHIAVDPDGR-FLYVANYGG 108 (345)
T ss_dssp ECCEEE-TTSS-EEEEEETTSSTTTEEEEEEEETTT----TEEEEEEEE----EESSSCEEEEEECTTSS-EEEEEETTT
T ss_pred CceEEEEeCCC-EEEEEEccccCCCCEEEEEECCCc----ceeEEeeee----ccCCCCcEEEEEecCCC-EEEEEEccC
Confidence 34489999986 4444444 34899999994321 122222222 11223556789999999 665555 79
Q ss_pred CcEEEEECCCCCcC--ceeecc----------CCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcc-c---ceeec
Q 037120 234 GVVNIWDRRVGVLP--SLELST----------GSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRT-S---APFHN 296 (489)
Q Consensus 234 g~i~iwd~~~~~~~--~~~~~~----------~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~-~---~~~~~ 296 (489)
|.|.++++...... ...... .......++.|+|+++++++... ...|++|++..... + ..+..
T Consensus 109 g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~ 188 (345)
T PF10282_consen 109 GSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKV 188 (345)
T ss_dssp TEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEEC
T ss_pred CeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccc
Confidence 99999999874221 111110 11244678999999999998865 56899999987542 2 22221
Q ss_pred CCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCC
Q 037120 297 HKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSD 376 (489)
Q Consensus 297 ~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 376 (489)
..+ ..-+.+.|+|+++++.-.. .....|..+.+.+.... +. .+ ..+...+..+...
T Consensus 189 ~~G---~GPRh~~f~pdg~~~Yv~~----e~s~~v~v~~~~~~~g~---------~~-~~-------~~~~~~~~~~~~~ 244 (345)
T PF10282_consen 189 PPG---SGPRHLAFSPDGKYAYVVN----ELSNTVSVFDYDPSDGS---------LT-EI-------QTISTLPEGFTGE 244 (345)
T ss_dssp STT---SSEEEEEE-TTSSEEEEEE----TTTTEEEEEEEETTTTE---------EE-EE-------EEEESCETTSCSS
T ss_pred ccC---CCCcEEEEcCCcCEEEEec----CCCCcEEEEeecccCCc---------ee-EE-------EEeeecccccccc
Confidence 111 1156777777776553211 11222233333211110 00 00 0011111111111
Q ss_pred CCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEe
Q 037120 377 SNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVT 456 (489)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~ 456 (489)
.....+..+|+|..+.++...++.|-+|++....... +.+..+. ........+++
T Consensus 245 -------~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l------~~~~~~~------------~~G~~Pr~~~~ 299 (345)
T PF10282_consen 245 -------NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL------TLVQTVP------------TGGKFPRHFAF 299 (345)
T ss_dssp -------SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE------EEEEEEE------------ESSSSEEEEEE
T ss_pred -------CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCce------EEEEEEe------------CCCCCccEEEE
Confidence 0112356678888888888888999999994320000 1111111 12234789999
Q ss_pred eCCCCeEEecc-CcceeEEEecc
Q 037120 457 HPLNNTIVAGT-KNSSLLVVSQK 478 (489)
Q Consensus 457 ~p~~~~i~sgs-~dg~i~v~~~~ 478 (489)
+|++++|+++. .++.|.+|...
T Consensus 300 s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 300 SPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp -TTSSEEEEEETTTTEEEEEEEE
T ss_pred eCCCCEEEEEecCCCeEEEEEEe
Confidence 99999777665 57788888654
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.4e-08 Score=98.70 Aligned_cols=160 Identities=11% Similarity=0.053 Sum_probs=100.7
Q ss_pred cCCCceeEEEECCCCcEEEEEecC---CeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 94 FGKPGISALDFDCKGIYLVSATRS---GCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~d---g~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
.+...+...+|+|||+.||..+.+ ..|.+||+.++..... . ... .. +...+|+|++..+
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l---------~---~~~---g~---~~~~~~SpDG~~l 257 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQI---------T---NFE---GL---NGAPAWSPDGSKL 257 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEc---------c---CCC---CC---cCCeEECCCCCEE
Confidence 344558899999999999887653 3688899987433221 0 011 11 4458999999866
Q ss_pred EEEEecCCC--EEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCC--cEEEEECCCCC
Q 037120 171 VACASTRSN--VVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THG--VVNIWDRRVGV 245 (489)
Q Consensus 171 l~s~~~d~g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg--~i~iwd~~~~~ 245 (489)
+++...+ | .|.+||+..+.. .. +..+........|+|+++ .|+..+ .++ .|+++|+.+++
T Consensus 258 a~~~~~~-g~~~Iy~~d~~~~~~---~~----------lt~~~~~~~~~~~spDg~-~i~f~s~~~g~~~iy~~d~~~g~ 322 (430)
T PRK00178 258 AFVLSKD-GNPEIYVMDLASRQL---SR----------VTNHPAIDTEPFWGKDGR-TLYFTSDRGGKPQIYKVNVNGGR 322 (430)
T ss_pred EEEEccC-CCceEEEEECCCCCe---EE----------cccCCCCcCCeEECCCCC-EEEEEECCCCCceEEEEECCCCC
Confidence 6666544 4 678888843210 11 122334556788999999 555444 443 57778887765
Q ss_pred cCceeeccCCCCceeEEEEeecCCEEEEEeC-CC--eEEEEEcCCCc
Q 037120 246 LPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HG--SIYLWDLRGGR 289 (489)
Q Consensus 246 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg--~i~lwd~~~~~ 289 (489)
...+ . ..........|+|+|+.++..+. ++ .|.+||+.+++
T Consensus 323 ~~~l--t-~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 323 AERV--T-FVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred EEEe--e-cCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCC
Confidence 2222 1 11223345789999999888765 33 58889988765
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.4e-08 Score=98.53 Aligned_cols=160 Identities=13% Similarity=0.072 Sum_probs=96.8
Q ss_pred CCCceeEEEECCCCcEEEEEec-CC--eEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 95 GKPGISALDFDCKGIYLVSATR-SG--CLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~-dg--~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
....+.+..|+|||+.|+..+. ++ .|.+||+.+++.... ....+ . ....+|+|+++.++
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l------------t~~~g---~---~~~~~wSPDG~~La 277 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV------------TSFPG---I---NGAPRFSPDGKKLA 277 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe------------cCCCC---C---cCCeeECCCCCEEE
Confidence 3345788999999999988765 33 578888876432210 00011 1 33589999998777
Q ss_pred EEEecCCCE--EEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCC--cEEEEECCCCCcC
Q 037120 172 ACASTRSNV--VSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG--VVNIWDRRVGVLP 247 (489)
Q Consensus 172 ~s~~~d~g~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~ 247 (489)
++.+.+ |. |.++|+..+ .. .. +..+.......+|+|+++.++++...++ .|+++|+.+++..
T Consensus 278 ~~~~~~-g~~~Iy~~dl~tg--~~----~~-------lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~ 343 (448)
T PRK04792 278 LVLSKD-GQPEIYVVDIATK--AL----TR-------ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS 343 (448)
T ss_pred EEEeCC-CCeEEEEEECCCC--Ce----EE-------CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence 766665 65 666676322 11 10 1223345677899999993444444444 4666787766522
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEEeC-CC--eEEEEEcCCCc
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAAGK-HG--SIYLWDLRGGR 289 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg--~i~lwd~~~~~ 289 (489)
.+ ..........+|+|+|++++..+. ++ .|.++|+.+++
T Consensus 344 ~L---t~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~ 385 (448)
T PRK04792 344 RL---TFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGA 385 (448)
T ss_pred EE---ecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCC
Confidence 22 112223345789999999888765 44 45667877664
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.01 E-value=2e-07 Score=91.93 Aligned_cols=140 Identities=14% Similarity=0.103 Sum_probs=86.3
Q ss_pred eeEEEeeCCCCCEEEEEecC-CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCC--
Q 037120 158 LDAVRWNLANQDEVACASTR-SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG-- 234 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d-~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg-- 234 (489)
+.+.+|+|+++.++++...+ ...|.+||+..+.. ..+ ..+...+.+++|+|+++.++++.+.++
T Consensus 192 ~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~---~~~----------~~~~~~~~~~~~spDg~~l~~~~~~~~~~ 258 (417)
T TIGR02800 192 ILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR---EKV----------ASFPGMNGAPAFSPDGSKLAVSLSKDGNP 258 (417)
T ss_pred eecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE---EEe----------ecCCCCccceEECCCCCEEEEEECCCCCc
Confidence 67789999998555544322 14799999843211 110 123335667899999984445555544
Q ss_pred cEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-CC--eEEEEEcCCCcccceeecCCccCCCCeeEEEeC
Q 037120 235 VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HG--SIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLA 311 (489)
Q Consensus 235 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg--~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~ 311 (489)
.|++||+.++. .. .+..+........|+|+|+.|+.++. ++ .|+++|+.+++. ..+..+... +..+.|+
T Consensus 259 ~i~~~d~~~~~--~~-~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~----~~~~~~s 330 (417)
T TIGR02800 259 DIYVMDLDGKQ--LT-RLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGY----NASPSWS 330 (417)
T ss_pred cEEEEECCCCC--EE-ECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCC----ccCeEEC
Confidence 58889998765 22 23334444557799999998887765 33 688888876553 233322323 5566677
Q ss_pred CCCccee
Q 037120 312 SMLEKIG 318 (489)
Q Consensus 312 ~~~~~i~ 318 (489)
|+|..+.
T Consensus 331 pdg~~i~ 337 (417)
T TIGR02800 331 PDGDLIA 337 (417)
T ss_pred CCCCEEE
Confidence 7766554
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.3e-07 Score=87.48 Aligned_cols=265 Identities=10% Similarity=0.059 Sum_probs=142.2
Q ss_pred ceeEEEECCCCcEEEEEec----CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 98 GISALDFDCKGIYLVSATR----SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~----dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
...-++++|++++|.+... +|.|..|++....- .+........ .+..-..++.+|++..++++
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g----------~L~~~~~~~~---~g~~p~~i~~~~~g~~l~va 104 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTG----------TLTLLNSVPS---GGSSPCHIAVDPDGRFLYVA 104 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTT----------EEEEEEEEEE---SSSCEEEEEECTTSSEEEEE
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcc----------eeEEeeeecc---CCCCcEEEEEecCCCEEEEE
Confidence 4667889999999988877 57999998876310 0110000000 11225568999998755544
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeec------CCcccCeeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCc
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVG------SDVQKGLSDLAFSAVNTSRLIASD-THGVVNIWDRRVGVL 246 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~------~~h~~~v~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~ 246 (489)
--. +|+|.++++.... ..........+.. ..-.....++.|+|+++ +++... ....|.+|++.....
T Consensus 105 ny~-~g~v~v~~l~~~g----~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~-~v~v~dlG~D~v~~~~~~~~~~ 178 (345)
T PF10282_consen 105 NYG-GGSVSVFPLDDDG----SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGR-FVYVPDLGADRVYVYDIDDDTG 178 (345)
T ss_dssp ETT-TTEEEEEEECTTS----EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSS-EEEEEETTTTEEEEEEE-TTS-
T ss_pred Ecc-CCeEEEEEccCCc----ccceeeeecccCCCCCcccccccccceeEEECCCCC-EEEEEecCCCEEEEEEEeCCCc
Confidence 434 4999999995431 1111111111000 11234567899999999 555554 556899999977542
Q ss_pred Cc---eeeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcC--CCcc--cceeecCCccCCCCeeEEEeCCCCccee
Q 037120 247 PS---LELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLR--GGRT--SAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 247 ~~---~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~--~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
.. ..........-..++|+|+++++++... ++.|.+|++. ++.. +..+... |.+
T Consensus 179 ~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~--------------~~~---- 240 (345)
T PF10282_consen 179 KLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTL--------------PEG---- 240 (345)
T ss_dssp TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESC--------------ETT----
T ss_pred eEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeec--------------ccc----
Confidence 11 1111234566789999999999999887 9999999998 3321 1111111 000
Q ss_pred eccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEe--eccceeeecCCCCCCcCCCCccccccCCCcceeecCCc
Q 037120 319 TLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDV--YNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNS 396 (489)
Q Consensus 319 ~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (489)
.........+.++|+++++++......-..++++ .++....+...+. .. ...|.+.+.|+|.
T Consensus 241 ------~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~---~G-------~~Pr~~~~s~~g~ 304 (345)
T PF10282_consen 241 ------FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPT---GG-------KFPRHFAFSPDGR 304 (345)
T ss_dssp ------SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEE---SS-------SSEEEEEE-TTSS
T ss_pred ------ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeC---CC-------CCccEEEEeCCCC
Confidence 0000122344455555554444433332222222 1122221111100 00 1125567778888
Q ss_pred EEEEeecCCCcEEEEeccC
Q 037120 397 IYAVGSSSDHGIHLLDFFP 415 (489)
Q Consensus 397 ~~l~sgs~d~~i~vwd~~~ 415 (489)
.++++.-.++.|.+|++..
T Consensus 305 ~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 305 YLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEEEETTTTEEEEEEEET
T ss_pred EEEEEecCCCeEEEEEEeC
Confidence 8888888889999998853
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.8e-07 Score=86.02 Aligned_cols=305 Identities=10% Similarity=0.076 Sum_probs=176.1
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec--
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST-- 176 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~-- 176 (489)
-+-+.|||.|.||++--.-| |.+|--.+-..... -.|.. |.-+.|||... .|++-+.
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~R---------------F~Hp~----Vq~idfSP~Ek-YLVT~s~~p 271 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQR---------------FYHPG----VQFIDFSPNEK-YLVTYSPEP 271 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCccHHHHHh---------------ccCCC----ceeeecCCccc-eEEEecCCc
Confidence 45678999999999988776 88996665222221 11332 77799999876 4444321
Q ss_pred --------CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCc
Q 037120 177 --------RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPS 248 (489)
Q Consensus 177 --------d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 248 (489)
+...++|||++++... ..+... .+....-.-..|+-|++ +++.-.. ..|.||+..+-. .
T Consensus 272 ~~~~~~d~e~~~l~IWDI~tG~lk--rsF~~~-------~~~~~~WP~frWS~DdK-y~Arm~~-~sisIyEtpsf~--l 338 (698)
T KOG2314|consen 272 IIVEEDDNEGQQLIIWDIATGLLK--RSFPVI-------KSPYLKWPIFRWSHDDK-YFARMTG-NSISIYETPSFM--L 338 (698)
T ss_pred cccCcccCCCceEEEEEccccchh--cceecc-------CCCccccceEEeccCCc-eeEEecc-ceEEEEecCcee--e
Confidence 1258999999665322 111111 11111223368999998 7776654 688999876532 2
Q ss_pred eeeccCCCCceeEEEEeecCCEEEEEeC-----CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceee-cc-
Q 037120 249 LELSTGSHGTLNSIQLHAENQIIFAAGK-----HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGT-LK- 321 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~-----dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~-~~- 321 (489)
+....-.-..|....|+|.+..|+-=.- --.+.|-.+.+++.+++-..+.-+ =..|.|...|.+++- ..
T Consensus 339 ld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVs----DckLhWQk~gdyLcvkvdR 414 (698)
T KOG2314|consen 339 LDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVS----DCKLHWQKSGDYLCVKVDR 414 (698)
T ss_pred ecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeee----ccEEEeccCCcEEEEEEEe
Confidence 2111112356888999999887665433 224667777776666665555422 345667777777721 00
Q ss_pred ------------------------ccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCC
Q 037120 322 ------------------------AQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDS 377 (489)
Q Consensus 322 ------------------------~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (489)
.........|...++.|.|..+++.+.... ...+..|.... . ...+..-
T Consensus 415 ~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~-k~tvsfY~~e~-~----~~~~~lV- 487 (698)
T KOG2314|consen 415 HTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTV-KNTVSFYAVET-N----IKKPSLV- 487 (698)
T ss_pred eccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcccc-ccceeEEEeec-C----CCchhhh-
Confidence 001112455677888999988776665433 11111111110 0 0001000
Q ss_pred CccccccCCCcceeecCCcEEEEee--cCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEE
Q 037120 378 NNSADQLHLRKPSWLSTNSIYAVGS--SSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACV 455 (489)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~l~sg--s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va 455 (489)
..++...-..+.|+|.|+.+++++ |..|.+.++|.... .....-. +-.-.-+.+.
T Consensus 488 -k~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a----------~~k~~~~------------~eh~~at~ve 544 (698)
T KOG2314|consen 488 -KELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYA----------DLKDTAS------------PEHFAATEVE 544 (698)
T ss_pred -hhhcccccceEEEcCCCcEEEEEEecccccceEEEecchh----------hhhhccC------------ccccccccce
Confidence 112223345688999988877764 56889999998753 1111111 1123457899
Q ss_pred eeCCCCeEEeccCcce
Q 037120 456 THPLNNTIVAGTKNSS 471 (489)
Q Consensus 456 ~~p~~~~i~sgs~dg~ 471 (489)
|.|.|.++++++.-+.
T Consensus 545 WDPtGRYvvT~ss~wr 560 (698)
T KOG2314|consen 545 WDPTGRYVVTSSSSWR 560 (698)
T ss_pred ECCCCCEEEEeeehhh
Confidence 9999999999876443
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.8e-09 Score=99.03 Aligned_cols=181 Identities=14% Similarity=0.149 Sum_probs=120.5
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
|..|.+.|+.++--.+.+-+++++.|.+|++|.+...-... |+...+..++.|+.. |.++.|-.+.. .+
T Consensus 731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~-------~tsaCQfTY~aHkk~---i~~igfL~~lr-~i 799 (1034)
T KOG4190|consen 731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEI-------GTSACQFTYQAHKKP---IHDIGFLADLR-SI 799 (1034)
T ss_pred ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcc-------ccceeeeEhhhccCc---ccceeeeeccc-ee
Confidence 66677788888776777889999999999999987632211 233334445667777 77799988753 33
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecC-CCcEEEE-EeCCCcEEEEECCCCCcCc-
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAV-NTSRLIA-SDTHGVVNIWDRRVGVLPS- 248 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s-~s~dg~i~iwd~~~~~~~~- 248 (489)
++ . ||-|++||.-.+ . .+..... ....+.+..+..-++ +..++++ |+...+|+++|.|..+..+
T Consensus 800 ~S-c--D~giHlWDPFig--r---~Laq~~d-----apk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E 866 (1034)
T KOG4190|consen 800 AS-C--DGGIHLWDPFIG--R---LLAQMED-----APKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCE 866 (1034)
T ss_pred ee-c--cCcceeeccccc--c---hhHhhhc-----CcccCCCceeEecccCcchheeeeccchhhheeeecccccceee
Confidence 33 3 389999997211 1 1110100 111123333444443 3324444 4788999999999987553
Q ss_pred eeec--cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeec
Q 037120 249 LELS--TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 249 ~~~~--~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
++.. .+.+..+.+++..+.|+.++++-+.|.|.+.|.|+|+.+..+..
T Consensus 867 ~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp 916 (1034)
T KOG4190|consen 867 LKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP 916 (1034)
T ss_pred EEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence 2222 24456788999999999999999999999999999987665543
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-08 Score=87.92 Aligned_cols=162 Identities=14% Similarity=0.121 Sum_probs=117.0
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
-.++.|++.|.-++++-.+|.+.+-+.... .++....++.|..+ +.-.+|+-..++++.+|++|
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~------------~le~vq~wk~He~E---~Wta~f~~~~pnlvytGgDD- 187 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEM------------VLEKVQTWKVHEFE---AWTAKFSDKEPNLVYTGGDD- 187 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEeccee------------eeeeccccccccee---eeeeecccCCCceEEecCCC-
Confidence 357889999999999999999985544431 23333346778777 55599988878899999988
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCc
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGT 258 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~ 258 (489)
+.+.-||++... ..+.... .-|+..|.+|.-+|..+..++||+.|-.|++||.|+-.+|.... .-.+.
T Consensus 188 ~~l~~~D~R~p~---~~i~~n~-------kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~--~v~GG 255 (339)
T KOG0280|consen 188 GSLSCWDIRIPK---TFIWHNS-------KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA--KVGGG 255 (339)
T ss_pred ceEEEEEecCCc---ceeeecc-------eeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC--ccccc
Confidence 999999996221 1222211 44888999999988777799999999999999999877664433 33589
Q ss_pred eeEEEEeecCC-EEEEEeCCCeEEEEEcCCC
Q 037120 259 LNSIQLHAENQ-IIFAAGKHGSIYLWDLRGG 288 (489)
Q Consensus 259 v~~~~~~p~~~-~l~~~~~dg~i~lwd~~~~ 288 (489)
|.-+.++|.-. .+++++--+-.+|-++...
T Consensus 256 VWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 256 VWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred eEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 99999999654 2333344444666666653
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.1e-07 Score=84.44 Aligned_cols=300 Identities=12% Similarity=0.102 Sum_probs=170.6
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE----EE
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA----CA 174 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~----s~ 174 (489)
++..+++++|+++|.+. +..++|++.......-. .-... +.++.|+|-+.++.. +.
T Consensus 37 ~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt----------------~~~~~---~~~L~fSP~g~yL~T~e~~~i 96 (566)
T KOG2315|consen 37 CNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLC----------------VELKK---TYDLLFSPKGNYLLTWEPWAI 96 (566)
T ss_pred ceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEE----------------eccce---eeeeeeccccccccccccccc
Confidence 66788999999888776 56899999887421110 00012 777999998753321 01
Q ss_pred ecC----CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 175 STR----SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 175 ~~d----~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
..+ .-.+++|++..... ...+. ...... +...|+.|.. +++--..+.+++||+...+.+ .
T Consensus 97 ~~~~~~~~pn~~v~~vet~~~--------~s~~q---~k~Q~~-W~~qfs~dEs--l~arlv~nev~f~~~~~f~~~-~- 160 (566)
T KOG2315|consen 97 YGPKNASNPNVLVYNVETGVQ--------RSQIQ---KKMQNG-WVPQFSIDES--LAARLVSNEVQFYDLGSFKTI-Q- 160 (566)
T ss_pred ccCCCCCCCceeeeeecccee--------hhhee---hhhhcC-cccccccchh--hhhhhhcceEEEEecCCccce-e-
Confidence 111 13577999843110 00010 111122 6788998876 343344678999999874422 1
Q ss_pred eccCCCCceeEEEEeecCC-EEEEE------eCCCeEEEEEcCCCcc-----cceeecCCccCCCCeeEEEeCCCCccee
Q 037120 251 LSTGSHGTLNSIQLHAENQ-IIFAA------GKHGSIYLWDLRGGRT-----SAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~-~l~~~------~~dg~i~lwd~~~~~~-----~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
-.-|...|+.+.++|.+. ..++. |.-+.|+||-..-... .++|-... --.+.|++-|..+.
T Consensus 161 -~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkad------kvqm~WN~~gt~LL 233 (566)
T KOG2315|consen 161 -HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKAD------KVQMKWNKLGTALL 233 (566)
T ss_pred -eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccc------eeEEEeccCCceEE
Confidence 224577899999999843 33332 3356799998773221 22222111 23456666664431
Q ss_pred e---------------------cccc------ceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCC
Q 037120 319 T---------------------LKAQ------SKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPP 371 (489)
Q Consensus 319 ~---------------------~~~~------~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 371 (489)
- +..+ ......+|+++.|+|+++.++++..-- -....+++....-++
T Consensus 234 vLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfM--PAkvtifnlr~~~v~---- 307 (566)
T KOG2315|consen 234 VLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFM--PAKVTIFNLRGKPVF---- 307 (566)
T ss_pred EEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecc--cceEEEEcCCCCEeE----
Confidence 0 0011 011256889999999987665442110 011122211111111
Q ss_pred CCcCCCCccccccCCCcceeecCCcEEEEeecCC--CcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCC
Q 037120 372 AWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSD--HGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSE 449 (489)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 449 (489)
.+.. -.+..+.|+|.|..++++|=.+ |.+-|||+.+. +.+..+. ..
T Consensus 308 df~e--------gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~----------K~i~~~~--------------a~ 355 (566)
T KOG2315|consen 308 DFPE--------GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR----------KLIAKFK--------------AA 355 (566)
T ss_pred eCCC--------CCccceEECCCCCEEEEeecCCCCCceEEEeccch----------hhccccc--------------cC
Confidence 1111 3456788888888877776443 79999999988 6666554 23
Q ss_pred ceEEEEeeCCCCeEEeccCc------ceeEEEeccc
Q 037120 450 GVTACVTHPLNNTIVAGTKN------SSLLVVSQKQ 479 (489)
Q Consensus 450 ~V~~va~~p~~~~i~sgs~d------g~i~v~~~~~ 479 (489)
.-+-++|+|+|.+|+|++.. ..+.||---.
T Consensus 356 ~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 356 NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 35678999999999888764 4555564333
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.1e-06 Score=89.87 Aligned_cols=201 Identities=13% Similarity=0.147 Sum_probs=116.7
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..|.++.|-++..-|+.+..+|.|.+...+.. ....+.+..|.... +|.+++||||.+ +|+....
T Consensus 76 ~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~------------~~~~~~E~VG~vd~--GI~a~~WSPD~E-lla~vT~ 140 (928)
T PF04762_consen 76 DKIVSFQYLADSESLCIALASGDIILVREDPD------------PDEDEIEIVGSVDS--GILAASWSPDEE-LLALVTG 140 (928)
T ss_pred CcEEEEEeccCCCcEEEEECCceEEEEEccCC------------CCCceeEEEEEEcC--cEEEEEECCCcC-EEEEEeC
Confidence 45999999999999999999999999933220 01112222333222 299999999987 5554444
Q ss_pred CCCEEEEEEeccC-------------CCCCc--------eeee-----e----ceeee------eecCCcccCeeEEEEe
Q 037120 177 RSNVVSIYDIGYI-------------SDEPV--------EVLK-----T----RRSVT------VVGSDVQKGLSDLAFS 220 (489)
Q Consensus 177 d~g~i~vwd~~~~-------------~~~~~--------~~~~-----~----~~~~~------~~~~~h~~~v~~~~~~ 220 (489)
+ +++.+.+-... ..++. ..++ . .+... ..+. +.+.-..|+|-
T Consensus 141 ~-~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWR 218 (928)
T PF04762_consen 141 E-GNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWR 218 (928)
T ss_pred C-CEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEEC
Confidence 4 77776643210 00000 0000 0 00000 0112 44566789999
Q ss_pred cCCCcEEEEEeC---C---CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC---CCeEEEEEcCCCccc
Q 037120 221 AVNTSRLIASDT---H---GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK---HGSIYLWDLRGGRTS 291 (489)
Q Consensus 221 ~~~~~~l~s~s~---d---g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~---dg~i~lwd~~~~~~~ 291 (489)
.||. +|+..+. + ..++||+-+ |. .......-.+--.+++|-|.|+++++.-. ...|.+|.- +|-.-
T Consensus 219 GDG~-yFAVss~~~~~~~~R~iRVy~Re-G~--L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrh 293 (928)
T PF04762_consen 219 GDGE-YFAVSSVEPETGSRRVIRVYSRE-GE--LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRH 293 (928)
T ss_pred CCCc-EEEEEEEEcCCCceeEEEEECCC-ce--EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEe
Confidence 9999 8887773 2 579999865 44 11111111222347899999998888754 456777774 44332
Q ss_pred ceeecCCccCCCCeeEEEeCCCCcceee
Q 037120 292 APFHNHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 292 ~~~~~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
..|.-........|..+.|++|+..++-
T Consensus 294 geF~l~~~~~~~~v~~l~Wn~ds~iLAv 321 (928)
T PF04762_consen 294 GEFTLRFDPEEEKVIELAWNSDSEILAV 321 (928)
T ss_pred eeEecCCCCCCceeeEEEECCCCCEEEE
Confidence 2232211000133999999999988853
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=7.9e-08 Score=91.30 Aligned_cols=146 Identities=14% Similarity=0.148 Sum_probs=107.9
Q ss_pred CcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCC
Q 037120 224 TSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHL 303 (489)
Q Consensus 224 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~ 303 (489)
..+++-|...|.|.+|++..++.........|.+.|+++.++.+-..+.+++.|+.+..|+....+.+..++.....
T Consensus 70 t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~--- 146 (541)
T KOG4547|consen 70 TSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPL--- 146 (541)
T ss_pred ceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCc---
Confidence 34788888999999999998873322122489999999999999999999999999999999987766666654433
Q ss_pred CeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccc
Q 037120 304 PLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQ 383 (489)
Q Consensus 304 ~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (489)
+.+++.+||
T Consensus 147 -~~sl~is~D---------------------------------------------------------------------- 155 (541)
T KOG4547|consen 147 -VSSLCISPD---------------------------------------------------------------------- 155 (541)
T ss_pred -cceEEEcCC----------------------------------------------------------------------
Confidence 333333332
Q ss_pred cCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCC----
Q 037120 384 LHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPL---- 459 (489)
Q Consensus 384 ~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~---- 459 (489)
+..++++ -+.|++||+.++ +.+..+. ||.++|.+++|--.
T Consensus 156 ------------~~~l~~a--s~~ik~~~~~~k----------evv~~ft------------gh~s~v~t~~f~~~~~g~ 199 (541)
T KOG4547|consen 156 ------------GKILLTA--SRQIKVLDIETK----------EVVITFT------------GHGSPVRTLSFTTLIDGI 199 (541)
T ss_pred ------------CCEEEec--cceEEEEEccCc----------eEEEEec------------CCCcceEEEEEEEecccc
Confidence 2223332 358999999999 9998888 99999999999877
Q ss_pred -CC-eEEeccCcceeEEEeccc
Q 037120 460 -NN-TIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 460 -~~-~i~sgs~dg~i~v~~~~~ 479 (489)
|. ++.+...+..+.+|-.++
T Consensus 200 ~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 200 IGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ccceeeeccccccceeEEEEEc
Confidence 44 445555666677764444
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.7e-07 Score=87.60 Aligned_cols=143 Identities=9% Similarity=0.061 Sum_probs=75.7
Q ss_pred eeEEEeeCCCCCEE--EEEecC-CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CC
Q 037120 158 LDAVRWNLANQDEV--ACASTR-SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-TH 233 (489)
Q Consensus 158 V~~v~~~~~~~~~l--~s~~~d-~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~d 233 (489)
+.+-+|+|++..+. +....+ ...|.+.++..+ +. ..+.. +.+ .....+|+|||+ .|+..+ .+
T Consensus 187 ~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g--~~-~~lt~-------~~g---~~~~p~wSPDG~-~Laf~s~~~ 252 (428)
T PRK01029 187 SITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP--AG-KKILA-------LQG---NQLMPTFSPRKK-LLAFISDRY 252 (428)
T ss_pred cccceEccCCCceEEEEEEccCCCceEEEEECCCC--Cc-eEeec-------CCC---CccceEECCCCC-EEEEEECCC
Confidence 45579999987532 233322 135666677433 21 11111 122 344579999999 555443 33
Q ss_pred C----cEEEEECCCCCc-CceeeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEE--EcCC-CcccceeecCCccCCCC
Q 037120 234 G----VVNIWDRRVGVL-PSLELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLW--DLRG-GRTSAPFHNHKEVCHLP 304 (489)
Q Consensus 234 g----~i~iwd~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lw--d~~~-~~~~~~~~~~~~~~~~~ 304 (489)
| .+.+||+..+.. ...+....+.......+|+|||+.|+..+. +|...|| ++.. +.....+..+...
T Consensus 253 g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~---- 328 (428)
T PRK01029 253 GNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRN---- 328 (428)
T ss_pred CCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCC----
Confidence 3 345577765321 122222222234467899999998887764 6655555 4432 2223333332223
Q ss_pred eeEEEeCCCCccee
Q 037120 305 LTSLKLASMLEKIG 318 (489)
Q Consensus 305 v~~l~~~~~~~~i~ 318 (489)
+....|+|||+.++
T Consensus 329 ~~~p~wSPDG~~La 342 (428)
T PRK01029 329 SSCPAWSPDGKKIA 342 (428)
T ss_pred ccceeECCCCCEEE
Confidence 55666777776554
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-05 Score=72.95 Aligned_cols=295 Identities=9% Similarity=0.111 Sum_probs=154.4
Q ss_pred CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec-CCCEEEEEEeccCCCCCce
Q 037120 117 SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST-RSNVVSIYDIGYISDEPVE 195 (489)
Q Consensus 117 dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~-d~g~i~vwd~~~~~~~~~~ 195 (489)
+.-|++|++++..-... ......+... .+-|+|+|+...+.+.... +.|.|-.|.+....+.
T Consensus 15 s~gI~v~~ld~~~g~l~-----------~~~~v~~~~n---ptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~--- 77 (346)
T COG2706 15 SQGIYVFNLDTKTGELS-----------LLQLVAELGN---PTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGR--- 77 (346)
T ss_pred CCceEEEEEeCcccccc-----------hhhhccccCC---CceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCe---
Confidence 56799999985222111 0111223334 5569999998644444443 1488888888432222
Q ss_pred eeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCCcEEEEECCCC-CcCceeeccCCCCc----------eeEEE
Q 037120 196 VLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THGVVNIWDRRVG-VLPSLELSTGSHGT----------LNSIQ 263 (489)
Q Consensus 196 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~-~~~~~~~~~~h~~~----------v~~~~ 263 (489)
+........ .++ +-+.++++++++ +++++. .-|.|.++-++.. ..........|.+. +.+..
T Consensus 78 -Lt~ln~~~~--~g~--~p~yvsvd~~g~-~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~ 151 (346)
T COG2706 78 -LTFLNRQTL--PGS--PPCYVSVDEDGR-FVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSAN 151 (346)
T ss_pred -EEEeecccc--CCC--CCeEEEECCCCC-EEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceee
Confidence 111111111 222 237899999999 666666 6789999998763 22111112244444 78899
Q ss_pred EeecCCEEEEEeC-CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCe
Q 037120 264 LHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSY 342 (489)
Q Consensus 264 ~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~ 342 (489)
+.|++++|++..- -..|.+|++..|+....-...- ....--+.|.|+|++++..-.. +....|.-..+++....
T Consensus 152 ~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~----EL~stV~v~~y~~~~g~ 226 (346)
T COG2706 152 FTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVN----ELNSTVDVLEYNPAVGK 226 (346)
T ss_pred eCCCCCEEEEeecCCceEEEEEcccCcccccccccc-CCCCCcceEEEcCCCcEEEEEe----ccCCEEEEEEEcCCCce
Confidence 9999999999865 4479999999776511111000 0001256777777776543211 11222222333222100
Q ss_pred EEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCee
Q 037120 343 QLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSH 422 (489)
Q Consensus 343 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~ 422 (489)
+ .....+.+.|..|...+.... +.-+++|..+.++--....|-++.+....
T Consensus 227 ~-----------------~~lQ~i~tlP~dF~g~~~~aa-------Ihis~dGrFLYasNRg~dsI~~f~V~~~~----- 277 (346)
T COG2706 227 F-----------------EELQTIDTLPEDFTGTNWAAA-------IHISPDGRFLYASNRGHDSIAVFSVDPDG----- 277 (346)
T ss_pred E-----------------EEeeeeccCccccCCCCceeE-------EEECCCCCEEEEecCCCCeEEEEEEcCCC-----
Confidence 0 011222333334433321111 12234444444443344477777775441
Q ss_pred eccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCc-ceeEEEeccccc
Q 037120 423 VDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKN-SSLLVVSQKQQC 481 (489)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~d-g~i~v~~~~~~~ 481 (489)
..+..+. ..+ .+...-....+.|.+++|++++++ ..|.||...+++
T Consensus 278 ----g~L~~~~---~~~------teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~T 324 (346)
T COG2706 278 ----GKLELVG---ITP------TEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKET 324 (346)
T ss_pred ----CEEEEEE---Eec------cCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCC
Confidence 1111111 000 233335778999999988888765 457778777665
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.3e-07 Score=91.70 Aligned_cols=171 Identities=13% Similarity=0.116 Sum_probs=117.5
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCC-CCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGT-LPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~-~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
-...|++|+....++|+|+.||.++|..+.+........ -..+..+.-...+.||... |.-+.|+...+ .|.++.
T Consensus 15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~s---V~vvTWNe~~Q-KLTtSD 90 (1189)
T KOG2041|consen 15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNAS---VMVVTWNENNQ-KLTTSD 90 (1189)
T ss_pred ceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcce---EEEEEeccccc-cccccC
Confidence 347899999999999999999999999887743322110 0000122223334678877 88899998875 666666
Q ss_pred cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce-eeccC
Q 037120 176 TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL-ELSTG 254 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~ 254 (489)
.+ |.|.||-+-.++.- +.+.. ......|.+++|+.+|. .++..-.||.|.+=.+.... .+ +.++
T Consensus 91 t~-GlIiVWmlykgsW~--EEMiN--------nRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGNR--IwgKeLk- 155 (1189)
T KOG2041|consen 91 TS-GLIIVWMLYKGSWC--EEMIN--------NRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGNR--IWGKELK- 155 (1189)
T ss_pred CC-ceEEEEeeecccHH--HHHhh--------CcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccce--ecchhcc-
Confidence 66 99999998433211 11100 22445899999999999 89999999998776555322 11 1111
Q ss_pred CCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 037120 255 SHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~ 287 (489)
......+.|++|.+.++.+-..|.+.+||...
T Consensus 156 -g~~l~hv~ws~D~~~~Lf~~ange~hlydnqg 187 (1189)
T KOG2041|consen 156 -GQLLAHVLWSEDLEQALFKKANGETHLYDNQG 187 (1189)
T ss_pred -hheccceeecccHHHHHhhhcCCcEEEecccc
Confidence 11234688999999988888899999999765
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.7e-06 Score=76.89 Aligned_cols=172 Identities=14% Similarity=0.104 Sum_probs=116.2
Q ss_pred CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEe
Q 037120 107 KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDI 186 (489)
Q Consensus 107 ~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~ 186 (489)
+|+++|..+. |...|.+......++ .+|... |.-..+.-+++ -++.|..|.-.+-|+|.
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iq----------------v~~~~~---VrY~r~~~~~e-~~vigt~dgD~l~iyd~ 389 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQ----------------VGKKGG---VRYRRIQVDPE-GDVIGTNDGDKLGIYDK 389 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEE----------------cCCCCc---eEEEEEccCCc-ceEEeccCCceEEEEec
Confidence 3888888875 556666655533322 333333 77788877776 56667666239999999
Q ss_pred ccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEee
Q 037120 187 GYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHA 266 (489)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p 266 (489)
..+.. +.. .+.-+.|.++..+++|+ .++.+.....+.+.|+.++....+ -....+-|+.++|+|
T Consensus 390 ~~~e~---------kr~----e~~lg~I~av~vs~dGK-~~vvaNdr~el~vididngnv~~i--dkS~~~lItdf~~~~ 453 (668)
T COG4946 390 DGGEV---------KRI----EKDLGNIEAVKVSPDGK-KVVVANDRFELWVIDIDNGNVRLI--DKSEYGLITDFDWHP 453 (668)
T ss_pred CCceE---------EEe----eCCccceEEEEEcCCCc-EEEEEcCceEEEEEEecCCCeeEe--cccccceeEEEEEcC
Confidence 43311 111 33445899999999999 888888888999999999873332 234467899999999
Q ss_pred cCCEEEEEeCC----CeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeec
Q 037120 267 ENQIIFAAGKH----GSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTL 320 (489)
Q Consensus 267 ~~~~l~~~~~d----g~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~ 320 (489)
+++.++-+--+ ..|+++|+.+++... ....... =.+-+|.||++++.-+
T Consensus 454 nsr~iAYafP~gy~tq~Iklydm~~~Kiy~-vTT~ta~----DfsPaFD~d~ryLYfL 506 (668)
T COG4946 454 NSRWIAYAFPEGYYTQSIKLYDMDGGKIYD-VTTPTAY----DFSPAFDPDGRYLYFL 506 (668)
T ss_pred CceeEEEecCcceeeeeEEEEecCCCeEEE-ecCCccc----ccCcccCCCCcEEEEE
Confidence 99998887444 469999999877522 2211111 2345788888887543
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.1e-07 Score=80.90 Aligned_cols=178 Identities=11% Similarity=0.160 Sum_probs=113.1
Q ss_pred CCCceeEEEECCCCcEEEEEecCCeEEEEeCCC-cccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFES-LYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~-~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
+...|++...-|...-+.+.+.|.+++||--.. ++ .-+ ..+.....+++++.+++... .|++
T Consensus 23 ~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q------------~wp----sI~~~mP~~~~~~~y~~e~~-~L~v 85 (404)
T KOG1409|consen 23 SQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQ------------YWP----SIYHYMPSPCSAMEYVSESR-RLYV 85 (404)
T ss_pred chhhhhhheeccCCCCeEEccccceeeeEEeccccc------------cCc----hhhhhCCCCceEeeeeccce-EEEE
Confidence 344466666667777799999999999995433 11 111 12222223388999998864 7888
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEEC------------
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDR------------ 241 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~------------ 241 (489)
|-.+ |++.-+.+...-.+ +...+.+ ..|...|..+-|+-... .+++.+.|..+.---.
T Consensus 86 g~~n-gtvtefs~sedfnk----m~~~r~~----~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~~~ 155 (404)
T KOG1409|consen 86 GQDN-GTVTEFALSEDFNK----MTFLKDY----LAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYNFE 155 (404)
T ss_pred EEec-ceEEEEEhhhhhhh----cchhhhh----hhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceEee
Confidence 8877 99998887432111 1112222 55777777777776555 6666665544421111
Q ss_pred ---------------------------CCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-cce
Q 037120 242 ---------------------------RVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-SAP 293 (489)
Q Consensus 242 ---------------------------~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-~~~ 293 (489)
.......+..+.+|.+.+.+++|.|....+++|..|..|-+||+-..+- ...
T Consensus 156 ~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~e 235 (404)
T KOG1409|consen 156 TPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYE 235 (404)
T ss_pred ccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeee
Confidence 1111123445668999999999999999999999999999999976443 334
Q ss_pred eecCCc
Q 037120 294 FHNHKE 299 (489)
Q Consensus 294 ~~~~~~ 299 (489)
+.+|.+
T Consensus 236 l~gh~~ 241 (404)
T KOG1409|consen 236 LQGHND 241 (404)
T ss_pred eccchh
Confidence 444443
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-08 Score=90.38 Aligned_cols=129 Identities=16% Similarity=0.207 Sum_probs=96.2
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEec-CCCcEEEEEeCCCcE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSA-VNTSRLIASDTHGVV 236 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~s~dg~i 236 (489)
|.++.|...+ +++..|..+ |.|..+|++........ .... .-|...|+++..-. +++ .|++.+.+|.|
T Consensus 255 VfAlQf~~s~-nLv~~GcRn-geI~~iDLR~rnqG~~~--~a~r------lyh~Ssvtslq~Lq~s~q-~LmaS~M~gki 323 (425)
T KOG2695|consen 255 VFALQFAGSD-NLVFNGCRN-GEIFVIDLRCRNQGNGW--CAQR------LYHDSSVTSLQILQFSQQ-KLMASDMTGKI 323 (425)
T ss_pred HHHHHhcccC-CeeEecccC-CcEEEEEeeecccCCCc--ceEE------EEcCcchhhhhhhccccc-eEeeccCcCce
Confidence 8889998765 488999988 99999999865332111 1111 23888999998776 566 88999999999
Q ss_pred EEEECCCCCcC-ceeeccCCCCceeE--EEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecC
Q 037120 237 NIWDRRVGVLP-SLELSTGSHGTLNS--IQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNH 297 (489)
Q Consensus 237 ~iwd~~~~~~~-~~~~~~~h~~~v~~--~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~ 297 (489)
++||+|..+.. -++...+|...-.- +-.++....++++|.|-..|||.++.|..+.+++..
T Consensus 324 kLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 324 KLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred eEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence 99999986611 26667777544332 334567778999999999999999999888777643
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-06 Score=76.32 Aligned_cols=181 Identities=12% Similarity=0.155 Sum_probs=111.7
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCC-----CCEEEE
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLAN-----QDEVAC 173 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~-----~~~l~s 173 (489)
=+-++||||+.+||.+...|+|+|||+......... +.....+ .-...|..+.|-+.. ...|+.
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~---------p~~~~~~--d~~~Aiagl~Fl~~~~s~~ws~ELlv 114 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIP---------PAMSFPG--DLSDAIAGLIFLEYKKSAQWSYELLV 114 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeEEcC---------cccccCC--ccccceeeeEeeccccccccceeEEE
Confidence 567899999999999999999999999864333211 1111111 111226667775432 224445
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeec-CCcccCeeEEEEecCCCcEEEEEe-CCC----------cEEEEEC
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVG-SDVQKGLSDLAFSAVNTSRLIASD-THG----------VVNIWDR 241 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~s-~dg----------~i~iwd~ 241 (489)
-..+ |.++=|-+..+.... ......+ .+ ..+...|+++.++|..+ +|+.|+ ... -+..|-+
T Consensus 115 i~Y~-G~L~Sy~vs~gt~q~---y~e~hsf--sf~~~yp~Gi~~~vy~p~h~-LLlVgG~~~~~~~~s~a~~~GLtaWRi 187 (282)
T PF15492_consen 115 INYR-GQLRSYLVSVGTNQG---YQENHSF--SFSSHYPHGINSAVYHPKHR-LLLVGGCEQNQDGMSKASSCGLTAWRI 187 (282)
T ss_pred Eecc-ceeeeEEEEcccCCc---ceeeEEE--EecccCCCceeEEEEcCCCC-EEEEeccCCCCCccccccccCceEEEE
Confidence 5455 888888873322111 1111111 11 33477999999999998 665555 221 2455543
Q ss_pred CCCCc------------------C-cee-----ec---cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCccccee
Q 037120 242 RVGVL------------------P-SLE-----LS---TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPF 294 (489)
Q Consensus 242 ~~~~~------------------~-~~~-----~~---~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~ 294 (489)
-.+.. . ..+ .+ ......|..|.++|||..|++...+|.|.+|++.+.+....+
T Consensus 188 L~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W 267 (282)
T PF15492_consen 188 LSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSW 267 (282)
T ss_pred cCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhccc
Confidence 22110 0 000 11 123567899999999999999999999999999998876666
Q ss_pred ecC
Q 037120 295 HNH 297 (489)
Q Consensus 295 ~~~ 297 (489)
..+
T Consensus 268 ~~~ 270 (282)
T PF15492_consen 268 KQD 270 (282)
T ss_pred chh
Confidence 543
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=3e-07 Score=90.08 Aligned_cols=182 Identities=12% Similarity=0.028 Sum_probs=104.5
Q ss_pred eeEEEECCCCcEEEEEec-CC----eEEEEeCCCcccccCCCCCCCCCcccccccc-cCCCCCCceeEEEeeCCCCCEEE
Q 037120 99 ISALDFDCKGIYLVSATR-SG----CLTVHDFESLYYQCNGTLPGVGLKEDQSKHL-LHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~-dg----~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~-~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
....+|||||+.||..+. +| .+.+|++...... ... ... .+... ....+|+|++..+++
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g---------~~~---~lt~~~~~~---~~~p~wSPDG~~Laf 297 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIG---------KPR---RLLNEAFGT---QGNPSFSPDGTRLVF 297 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCC---------cce---EeecCCCCC---cCCeEECCCCCEEEE
Confidence 456789999998887653 23 3344665542100 000 001 01111 345899999986666
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeC-C--CcEEEEECCCCCcCce
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT-H--GVVNIWDRRVGVLPSL 249 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~-d--g~i~iwd~~~~~~~~~ 249 (489)
+...+ |...||.+...... .. ... +..+...+....|+|||+ .|+..+. + ..|.+||+.+++. .
T Consensus 298 ~s~~~-g~~~ly~~~~~~~g--~~---~~~----lt~~~~~~~~p~wSPDG~-~Laf~~~~~g~~~I~v~dl~~g~~--~ 364 (428)
T PRK01029 298 VSNKD-GRPRIYIMQIDPEG--QS---PRL----LTKKYRNSSCPAWSPDGK-KIAFCSVIKGVRQICVYDLATGRD--Y 364 (428)
T ss_pred EECCC-CCceEEEEECcccc--cc---eEE----eccCCCCccceeECCCCC-EEEEEEcCCCCcEEEEEECCCCCe--E
Confidence 55545 76666655321101 00 010 122334567889999999 6665543 2 4699999988763 2
Q ss_pred eeccCCCCceeEEEEeecCCEEEEEeC---CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCC
Q 037120 250 ELSTGSHGTLNSIQLHAENQIIFAAGK---HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASML 314 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~p~~~~l~~~~~---dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 314 (489)
.+......+....|+|+|+.|+..+. ...|+++|+.+++.. .+....+. +...+|+|-.
T Consensus 365 -~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~-~Lt~~~g~----~~~p~Ws~~~ 426 (428)
T PRK01029 365 -QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR-KIVIGSGE----KRFPSWGAFP 426 (428)
T ss_pred -EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCc----ccCceecCCC
Confidence 22222345678999999998876543 467999999876642 22222333 5566777643
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-07 Score=92.05 Aligned_cols=151 Identities=16% Similarity=0.281 Sum_probs=110.1
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCce-eee--eceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCC
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVE-VLK--TRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG 234 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~-~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg 234 (489)
..|++|+... +.+++|+.| |.++|-.+.+....... -+. ..-....++.||+..|.-+.|+.+.+ .|-|+..+|
T Consensus 17 L~c~~WNke~-gyIAcgG~d-GlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q-KLTtSDt~G 93 (1189)
T KOG2041|consen 17 LHCAEWNKES-GYIACGGAD-GLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ-KLTTSDTSG 93 (1189)
T ss_pred EEEEEEcccC-CeEEecccc-ceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc-cccccCCCc
Confidence 7889999875 588999988 99999998643211100 010 11123445799999999999999888 899999999
Q ss_pred cEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCC
Q 037120 235 VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASM 313 (489)
Q Consensus 235 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~ 313 (489)
.|.+|-+-.+++..-.+.....+.|.+++|+.+|..+...-.||.|.+=.+...+. -+.+++.. ...+.|++|
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~------l~hv~ws~D 167 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQL------LAHVLWSED 167 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchhe------ccceeeccc
Confidence 99999998876542222234467889999999999999998899988776665433 33444422 678889998
Q ss_pred Ccce
Q 037120 314 LEKI 317 (489)
Q Consensus 314 ~~~i 317 (489)
.+.+
T Consensus 168 ~~~~ 171 (1189)
T KOG2041|consen 168 LEQA 171 (1189)
T ss_pred HHHH
Confidence 8655
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.1e-07 Score=79.40 Aligned_cols=287 Identities=13% Similarity=0.203 Sum_probs=154.1
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeec------eeeeeecCCcccCeeEEEEecCCC-cEEEEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTR------RSVTVVGSDVQKGLSDLAFSAVNT-SRLIAS 230 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~ 230 (489)
|.+|.|+..|. .|++|..+ |.|.++.-.......-...... ..+... ..-...|+.+.|.++++ ..|+..
T Consensus 28 is~vef~~~Ge-~LatGdkg-GRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkS-leieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 28 ISAVEFDHYGE-RLATGDKG-GRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKS-LEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred eeeEEeecccc-eEeecCCC-CeEEEeecccccccceeeeeeeeccCcccchhhh-hhhhhhhhhceecCCCCccEEEEe
Confidence 89999999986 88999888 9999987633221100000000 000000 11245789999998876 467788
Q ss_pred eCCCcEEEEECCCCCcCc---------------------------------eeec-cCCCCceeEEEEeecCCEEEEEeC
Q 037120 231 DTHGVVNIWDRRVGVLPS---------------------------------LELS-TGSHGTLNSIQLHAENQIIFAAGK 276 (489)
Q Consensus 231 s~dg~i~iwd~~~~~~~~---------------------------------~~~~-~~h~~~v~~~~~~p~~~~l~~~~~ 276 (489)
+.|.+|++|-++...... .+.+ .+|.--|+++.++.|+..++++ .
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-D 183 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-D 183 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-c
Confidence 889999999876432110 1111 2677789999999999987765 5
Q ss_pred CCeEEEEEcCCCcc---cceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCce
Q 037120 277 HGSIYLWDLRGGRT---SAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWS 353 (489)
Q Consensus 277 dg~i~lwd~~~~~~---~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~ 353 (489)
|=.|.+|++.-... +..++.+. ......-|++..|+|....+++++...+-.
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~n-------------------------mEeLteVITsaEFhp~~cn~f~YSSSKGtI 238 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPAN-------------------------MEELTEVITSAEFHPHHCNVFVYSSSKGTI 238 (433)
T ss_pred ceeeeeccccccCCceeEEEccccC-------------------------HHHHHHHHhhhccCHhHccEEEEecCCCcE
Confidence 77899999875332 11111111 001111234444555555555555444433
Q ss_pred EEEEeeccceeeecCCCCCCcCCCCc------cccccCCCcceeecCCcEEEEeecCC-CcEEEEeccCCCCCCeeeccC
Q 037120 354 GVLDVYNSRVSHVHCPPPAWLSDSNN------SADQLHLRKPSWLSTNSIYAVGSSSD-HGIHLLDFFPGSSSPSHVDYN 426 (489)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~sgs~d-~~i~vwd~~~~~~~~~~~~~~ 426 (489)
++.++.....-..++. .|.....+ +.-...+..+-|+.. |+|+++ .| -+|+|||+.-. ..++.
T Consensus 239 rLcDmR~~aLCd~hsK--lfEepedp~~rsffseiIsSISDvKFs~s-Gryils--RDyltvk~wD~nme-~~pv~---- 308 (433)
T KOG1354|consen 239 RLCDMRQSALCDAHSK--LFEEPEDPSSRSFFSEIISSISDVKFSHS-GRYILS--RDYLTVKLWDLNME-AKPVE---- 308 (433)
T ss_pred EEeechhhhhhcchhh--hhccccCCcchhhHHHHhhhhhceEEccC-CcEEEE--eccceeEEEecccc-CCcce----
Confidence 4444442111111110 11111000 000011122333333 677777 55 59999999543 11110
Q ss_pred cccchhh-HhhhhcccCCcccCCCce---EEEEeeCCCCeEEeccCcceeEEEecccccccccccc
Q 037120 427 EDIESLS-ERTKLKKENRFVPLSEGV---TACVTHPLNNTIVAGTKNSSLLVVSQKQQCTSDSMLE 488 (489)
Q Consensus 427 ~~~~~~~-~~~~~~~~~~~~~h~~~V---~~va~~p~~~~i~sgs~dg~i~v~~~~~~~~~~~~~~ 488 (489)
..+... .+.+.-. +--.+.| ..++|+-++..++|||.+....||...+.+.++..++
T Consensus 309 -t~~vh~~lr~kLc~----lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~d~tl~ 369 (433)
T KOG1354|consen 309 -TYPVHEYLRSKLCS----LYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKEDFTLE 369 (433)
T ss_pred -EEeehHhHHHHHHH----HhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcceeeccc
Confidence 000000 0000000 0012222 5689998999999999999999998777776665543
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.6e-07 Score=83.78 Aligned_cols=80 Identities=19% Similarity=0.217 Sum_probs=67.8
Q ss_pred CCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcC
Q 037120 208 SDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLR 286 (489)
Q Consensus 208 ~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~ 286 (489)
.+|...|.+++|+|....++..++.+..|+|.|+++.. ++..+..+ ..+.+++|+-+..+.+-+|. .|.|.+||+|
T Consensus 190 p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~--~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 190 PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC--VVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred cccchhhhhhccCccccceeeeeccCceEEEEecccce--eeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 66778999999999888788999999999999999866 56556566 78999999998877666666 9999999999
Q ss_pred CCcc
Q 037120 287 GGRT 290 (489)
Q Consensus 287 ~~~~ 290 (489)
..+.
T Consensus 267 ~~~~ 270 (463)
T KOG1645|consen 267 QPEG 270 (463)
T ss_pred CCCc
Confidence 8654
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.5e-06 Score=88.66 Aligned_cols=182 Identities=16% Similarity=0.159 Sum_probs=100.8
Q ss_pred eEEEECCC-CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 100 SALDFDCK-GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 100 ~~~~fs~~-g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
..+++++. |.++++-+.++.|++||...............|...+.. -..+... -..+++++++..++++-..+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~-~~a~f~~---P~GIavd~~gn~LYVaDt~n- 645 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSF-EDATFNR---PQGLAYNAKKNLLYVADTEN- 645 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCch-hccccCC---CcEEEEeCCCCEEEEEeCCC-
Confidence 36788875 667777788899999998764322111000000000000 0012222 34499998875455555545
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCc-------ccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee-
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDV-------QKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE- 250 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h-------~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~- 250 (489)
+.|+++|..... ...+...........+- -..-..++++|++..++++.+.++.|++||..++....+.
T Consensus 646 ~~Ir~id~~~~~---V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G 722 (1057)
T PLN02919 646 HALREIDFVNET---VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSG 722 (1057)
T ss_pred ceEEEEecCCCE---EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEec
Confidence 789999974321 01111000000000000 1133579999955547788888999999998775411000
Q ss_pred -----eccCC------CCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCc
Q 037120 251 -----LSTGS------HGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGR 289 (489)
Q Consensus 251 -----~~~~h------~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~ 289 (489)
...++ -.....++++|++..|+++.. ++.|++||+.++.
T Consensus 723 ~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~ 773 (1057)
T PLN02919 723 DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGG 773 (1057)
T ss_pred CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCc
Confidence 00010 123457999999986666644 8999999998764
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.6e-09 Score=108.91 Aligned_cols=155 Identities=18% Similarity=0.207 Sum_probs=117.3
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE--
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA-- 174 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~-- 174 (489)
..|+.+.|+.+|+.+..+..||.+-+|.+... +-..++.|... ...++|-.. +++++
T Consensus 2252 s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk---------------~~~s~qchnk~---~~Df~Fi~s---~~~tag~ 2310 (2439)
T KOG1064|consen 2252 SRVTRSRFNHQGNKFGIVDGDGDLSLWQASPK---------------PYTSWQCHNKA---LSDFRFIGS---LLATAGR 2310 (2439)
T ss_pred chhhhhhhcccCCceeeeccCCceeecccCCc---------------ceeccccCCcc---ccceeeeeh---hhhcccc
Confidence 45889999999999999999999999988742 22223556666 455777652 44443
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccC
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 254 (489)
+.|++.+.+||.... +...+++ ..|...++++++-|..+ +|++|+.+|.|++||++..+ ..+.+..
T Consensus 2311 s~d~~n~~lwDtl~~---------~~~s~v~--~~H~~gaT~l~~~P~~q-llisggr~G~v~l~D~rqrq--l~h~~~~ 2376 (2439)
T KOG1064|consen 2311 SSDNRNVCLWDTLLP---------PMNSLVH--TCHDGGATVLAYAPKHQ-LLISGGRKGEVCLFDIRQRQ--LRHTFQA 2376 (2439)
T ss_pred CCCCCcccchhcccC---------cccceee--eecCCCceEEEEcCcce-EEEecCCcCcEEEeehHHHH--HHHHhhh
Confidence 344589999997322 2333344 66999999999999999 99999999999999999865 3333321
Q ss_pred CCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeec
Q 037120 255 SHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
++ ...++++|+..|.|+||++.....++++..
T Consensus 2377 ---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2377 ---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred ---------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 44 667889999999999999999887877763
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.2e-08 Score=84.39 Aligned_cols=185 Identities=19% Similarity=0.325 Sum_probs=110.3
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcc-cccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC-CCCEEEEE
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLY-YQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA-NQDEVACA 174 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~-~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~-~~~~l~s~ 174 (489)
.-|+++.|...|.|||+|...|.|.+|.-+... |..+-. ..+...+.+..+.....-...|..+.|..+ +...++..
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~-teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLls 105 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFF-TEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLS 105 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeecccccccchhhh-hhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEe
Confidence 349999999999999999999999999776532 111100 000001111111111111123777888644 33344444
Q ss_pred ecCCCEEEEEEeccCC-----------------CCC----ceee-------------eeceeeeeecCCcccCeeEEEEe
Q 037120 175 STRSNVVSIYDIGYIS-----------------DEP----VEVL-------------KTRRSVTVVGSDVQKGLSDLAFS 220 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~-----------------~~~----~~~~-------------~~~~~~~~~~~~h~~~v~~~~~~ 220 (489)
+.| .+|++|.+.... ..+ .+.+ .+.+.+ -..|.--|+++.|+
T Consensus 106 tNd-ktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvy---aNaH~yhiNSiS~N 181 (460)
T COG5170 106 TND-KTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVY---ANAHPYHINSISFN 181 (460)
T ss_pred cCC-ceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceec---cccceeEeeeeeec
Confidence 445 999999986431 000 0000 011100 14588889999999
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCCcC-ceeeccCCC-----CceeEEEEeecCCEEE-EEeCCCeEEEEEcCCC
Q 037120 221 AVNTSRLIASDTHGVVNIWDRRVGVLP-SLELSTGSH-----GTLNSIQLHAENQIIF-AAGKHGSIYLWDLRGG 288 (489)
Q Consensus 221 ~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~h~-----~~v~~~~~~p~~~~l~-~~~~dg~i~lwd~~~~ 288 (489)
.|.+ .++++. |-.|.+|++...... .+-.++.|. .-|++..|+|....++ -.++.|.|++-|+|..
T Consensus 182 sD~e-t~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~ 254 (460)
T COG5170 182 SDKE-TLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQS 254 (460)
T ss_pred Cchh-eeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhh
Confidence 8887 666655 789999998765332 111233443 4588999999765544 4455999999999953
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.8e-05 Score=81.77 Aligned_cols=348 Identities=13% Similarity=0.124 Sum_probs=177.8
Q ss_pred CCceeEEEECCCCcEEEEEecCCeEEEEeCCCcc----cccC-CCCC----CCCCccccccccc----------------
Q 037120 96 KPGISALDFDCKGIYLVSATRSGCLTVHDFESLY----YQCN-GTLP----GVGLKEDQSKHLL---------------- 150 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~----~~~~-~~~~----~~g~~~~~~~~~~---------------- 150 (489)
..||.|++||||+.+||..+.++++.+.+-+-.. .... .... .+|=-..+..+.|
T Consensus 120 d~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~ 199 (928)
T PF04762_consen 120 DSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVP 199 (928)
T ss_pred cCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCC
Confidence 3579999999999999999999999876432110 0000 0000 0000000111111
Q ss_pred -----CCCCCCceeEEEeeCCCCCEEEEEe--cCC--CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEec
Q 037120 151 -----HIPLPQQLDAVRWNLANQDEVACAS--TRS--NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSA 221 (489)
Q Consensus 151 -----h~~~~~~V~~v~~~~~~~~~l~s~~--~d~--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 221 (489)
......+-..++|-.||+++.++.- ..+ ..++||+-. ..+.... ..-.+--..++|.|
T Consensus 200 ~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-------G~L~stS------E~v~gLe~~l~WrP 266 (928)
T PF04762_consen 200 KVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-------GELQSTS------EPVDGLEGALSWRP 266 (928)
T ss_pred ccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-------ceEEecc------ccCCCccCCccCCC
Confidence 0000112456899999985444432 222 689999862 1121111 11111234689999
Q ss_pred CCCcEEEEEeC---CCcEEEEECCCCCcCceee-ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc--cceee
Q 037120 222 VNTSRLIASDT---HGVVNIWDRRVGVLPSLEL-STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT--SAPFH 295 (489)
Q Consensus 222 ~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~-~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~--~~~~~ 295 (489)
.|+ +|++... ...|.+|.-+--+...+.. +......|..++|++++..|+..-.|. |.+|-..+..- .+.+.
T Consensus 267 sG~-lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~ 344 (928)
T PF04762_consen 267 SGN-LIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIR 344 (928)
T ss_pred CCC-EEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEE
Confidence 998 8887763 3456667533211111211 113456789999999999998877655 99998876432 22222
Q ss_pred cCCccCCCCeeEEEeCCCCcce---ee-------------------------------------------------cccc
Q 037120 296 NHKEVCHLPLTSLKLASMLEKI---GT-------------------------------------------------LKAQ 323 (489)
Q Consensus 296 ~~~~~~~~~v~~l~~~~~~~~i---~~-------------------------------------------------~~~~ 323 (489)
-... ..+..+.|+|....- .+ +...
T Consensus 345 ~~~~---~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~ 421 (928)
T PF04762_consen 345 FSSS---ESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSY 421 (928)
T ss_pred ccCC---CCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhce
Confidence 1111 114446777654221 00 0000
Q ss_pred ceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCC--CCCCcC----CCCccccccCCCcceeecCCcE
Q 037120 324 SKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCP--PPAWLS----DSNNSADQLHLRKPSWLSTNSI 397 (489)
Q Consensus 324 ~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 397 (489)
.......|..++|++++..+++...++... ++............+ ...+.. ...........+.++|..++..
T Consensus 422 ~l~~~~~v~~vaf~~~~~~~avl~~d~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (928)
T PF04762_consen 422 ELELPSPVNDVAFSPSNSRFAVLTSDGSLS-IYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTL 500 (928)
T ss_pred EEcCCCCcEEEEEeCCCCeEEEEECCCCEE-EEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEE
Confidence 111255688888988887777777666521 111000000000000 000000 0001112244577888888766
Q ss_pred EEEeecC--CCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEE
Q 037120 398 YAVGSSS--DHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVV 475 (489)
Q Consensus 398 ~l~sgs~--d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~ 475 (489)
+++.... -..+.++++..... . ..+.... .-.+.+..++..+....++.-..+|.+..+
T Consensus 501 ~~~~~~~~~~~~i~~~~~~~~~~-~------~~~~~~~------------~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~ 561 (928)
T PF04762_consen 501 LVLSDSDSNQSKIVLVDIDDSEN-S------ASVESST------------EVDGVVLIISSSPDSGSLYIQTNDGKVFQL 561 (928)
T ss_pred EEEEecCcccceEEEEEeccCCC-c------eeEEEEe------------ccCceEEEEeeCCCCcEEEEEECCCEEEEe
Confidence 6666553 35788888743300 0 1111111 234456666666665556666678888876
Q ss_pred eccccc
Q 037120 476 SQKQQC 481 (489)
Q Consensus 476 ~~~~~~ 481 (489)
+.....
T Consensus 562 ~~~~~~ 567 (928)
T PF04762_consen 562 SSDGEL 567 (928)
T ss_pred ecCCCc
Confidence 555543
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.6e-06 Score=74.71 Aligned_cols=171 Identities=9% Similarity=-0.061 Sum_probs=111.0
Q ss_pred CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEec
Q 037120 108 GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIG 187 (489)
Q Consensus 108 g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~ 187 (489)
..+||.|+.-|...+|...+.+.... .. ..|... |+-+.=.-+...-+..++.| .++++.++.
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~-------~c------d~snn~---v~~~~r~cd~~~~~~i~snd-ht~k~~~~~ 146 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLY-------QC------DVSNND---VTLVKRYCDLKFPLNIASND-HTGKTMVVS 146 (344)
T ss_pred ccEEEeccccceeeeecccCccccee-------ee------cccccc---hhhhhhhcccccceeeccCC-cceeEEEEe
Confidence 46899999999999999986322211 00 111111 22222122222344555556 899999995
Q ss_pred cCCCCCceeeeeceeeeeecCCccc--CeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee-eccCCCCceeEEEE
Q 037120 188 YISDEPVEVLKTRRSVTVVGSDVQK--GLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE-LSTGSHGTLNSIQL 264 (489)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~h~~~v~~~~~ 264 (489)
....+ . .-|.. .++++++++++. ++++.+....|..|.+.....-.++ .....++.-.+..|
T Consensus 147 ~~s~~--~------------~~h~~~~~~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~ 211 (344)
T KOG4532|consen 147 GDSNK--F------------AVHNQNLTQNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSF 211 (344)
T ss_pred cCccc--c------------eeeccccceeeeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeee
Confidence 44322 1 11222 388999999999 9999999999999988765433333 22344455678999
Q ss_pred eecCCEEEEEeCCCeEEEEEcCCCcccc-----eeecCCccCCCCeeEEEeCCCC
Q 037120 265 HAENQIIFAAGKHGSIYLWDLRGGRTSA-----PFHNHKEVCHLPLTSLKLASML 314 (489)
Q Consensus 265 ~p~~~~l~~~~~dg~i~lwd~~~~~~~~-----~~~~~~~~~~~~v~~l~~~~~~ 314 (489)
+.....++++..||++.|||+|...... +-..|.++ ++.+.|++.|
T Consensus 212 s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa----~R~c~Fsl~g 262 (344)
T KOG4532|consen 212 SENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGA----FRVCRFSLYG 262 (344)
T ss_pred ccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCc----eEEEEecCCC
Confidence 9999999999999999999999865422 22245555 8888888744
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2e-06 Score=81.48 Aligned_cols=186 Identities=16% Similarity=0.162 Sum_probs=122.1
Q ss_pred CCCceeEEEECCCC--cEEEE-----EecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCC
Q 037120 95 GKPGISALDFDCKG--IYLVS-----ATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLAN 167 (489)
Q Consensus 95 ~~~~V~~~~fs~~g--~~la~-----g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~ 167 (489)
+..+|+.+++||.+ ..+|+ ++.-+.|+||.+........ .... ..-... =..+.|++-+
T Consensus 164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~---------~a~k--sFFkad---kvqm~WN~~g 229 (566)
T KOG2315|consen 164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQP---------VANK--SFFKAD---KVQMKWNKLG 229 (566)
T ss_pred eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccch---------hhhc--cccccc---eeEEEeccCC
Confidence 34678899999873 33443 35567899998763111110 0000 011111 1237899988
Q ss_pred CCEEEEEecC----------CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEE--eCCCc
Q 037120 168 QDEVACASTR----------SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIAS--DTHGV 235 (489)
Q Consensus 168 ~~~l~s~~~d----------~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~--s~dg~ 235 (489)
..+|+.++.| ..++++.++.. . .. ...+ .-.++|.++.|+|++. .|+.+ -.-..
T Consensus 230 t~LLvLastdVDktn~SYYGEq~Lyll~t~g---~--s~-------~V~L-~k~GPVhdv~W~~s~~-EF~VvyGfMPAk 295 (566)
T KOG2315|consen 230 TALLVLASTDVDKTNASYYGEQTLYLLATQG---E--SV-------SVPL-LKEGPVHDVTWSPSGR-EFAVVYGFMPAK 295 (566)
T ss_pred ceEEEEEEEeecCCCccccccceEEEEEecC---c--eE-------EEec-CCCCCceEEEECCCCC-EEEEEEecccce
Confidence 8887776655 23566666631 1 11 1111 1245999999999998 55443 36778
Q ss_pred EEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC---CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCC
Q 037120 236 VNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK---HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLAS 312 (489)
Q Consensus 236 i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~---dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 312 (489)
+.|+|++-. .+..+ .+++=+++-|+|.|++++.+|. -|.+-+||+.+.+++..+.... -+-+.|+|
T Consensus 296 vtifnlr~~---~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~------tt~~eW~P 364 (566)
T KOG2315|consen 296 VTIFNLRGK---PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN------TTVFEWSP 364 (566)
T ss_pred EEEEcCCCC---EeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC------ceEEEEcC
Confidence 999999852 23233 3678889999999999988877 7899999999988888887644 56778999
Q ss_pred CCcceee
Q 037120 313 MLEKIGT 319 (489)
Q Consensus 313 ~~~~i~~ 319 (489)
||+++.+
T Consensus 365 dGe~flT 371 (566)
T KOG2315|consen 365 DGEYFLT 371 (566)
T ss_pred CCcEEEE
Confidence 9988854
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.9e-07 Score=80.44 Aligned_cols=233 Identities=11% Similarity=0.170 Sum_probs=150.4
Q ss_pred eeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCc--CceeeccCCCCceeEEEEeecCCEEEEEeCCCeEE
Q 037120 204 TVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVL--PSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIY 281 (489)
Q Consensus 204 ~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~ 281 (489)
.....||.+.|++...-|..+ -+++.+.|.+++||--+...+ +.+.. .-..+++++.+.+....|++|-..|++.
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~-gv~~~s~drtvrv~lkrds~q~wpsI~~--~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEE-GVISVSEDRTVRVWLKRDSGQYWPSIYH--YMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhcCchhhhhhheeccCCC-CeEEccccceeeeEEeccccccCchhhh--hCCCCceEeeeeccceEEEEEEecceEE
Confidence 334588999999999999888 899999999999996554321 22222 2256789999999999999998899999
Q ss_pred EEEcCC----CcccceeecCCccCCCCeeEEEeCCCCcceeecc--ccceee----ccce--eEE-EeCCCCCeEEEEEe
Q 037120 282 LWDLRG----GRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLK--AQSKIV----SQEI--HSI-DLDPSCSYQLAFHL 348 (489)
Q Consensus 282 lwd~~~----~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~--~~~~~~----~~~i--~~~-~~~p~~~~~~~~~~ 348 (489)
-+.+.. ...++....|... +..+-|+-.-+.+.+.. .+..-+ ...+ +-+ .....-.+.+.+..
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~----v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~f 169 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQAR----VSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAF 169 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcc----eeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEE
Confidence 886643 2235556677755 88888876665553211 110000 0000 000 00000111111222
Q ss_pred --cCCce-----------EEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccC
Q 037120 349 --DDGWS-----------GVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFP 415 (489)
Q Consensus 349 --~~~w~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~ 415 (489)
+..|. .++-...+++..+.+. .|... ..++.+|+.|..+.+||+..
T Consensus 170 vGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l--~Wd~~-------------------~~~LfSg~~d~~vi~wdigg 228 (404)
T KOG1409|consen 170 VGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCL--KWDPG-------------------QRLLFSGASDHSVIMWDIGG 228 (404)
T ss_pred ecccccceEEEEEeecCCceEEEEcCcccceEEE--EEcCC-------------------CcEEEeccccCceEEEeccC
Confidence 22231 2233334555554444 44444 77899999999999999976
Q ss_pred CCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccccccccc
Q 037120 416 GSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQCTSDS 485 (489)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~~~~~ 485 (489)
.. ....++. +|.+.|..+..-+.-..+.++++||.|.+|.=+.+-...|
T Consensus 229 ~~---------g~~~el~------------gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etp 277 (404)
T KOG1409|consen 229 RK---------GTAYELQ------------GHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETP 277 (404)
T ss_pred Cc---------ceeeeec------------cchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCc
Confidence 61 2334455 8999999999998889999999999999997766655544
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.3e-06 Score=78.55 Aligned_cols=268 Identities=11% Similarity=0.141 Sum_probs=150.0
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeC-----
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT----- 232 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~----- 232 (489)
=+-+.|||.|. .|++-- -.-|.+|-- ......+.|. | ..|.-+.|+|..+ +|+|-+.
T Consensus 213 etyv~wSP~GT-YL~t~H--k~GI~lWGG--------~~f~r~~RF~-----H-p~Vq~idfSP~Ek-YLVT~s~~p~~~ 274 (698)
T KOG2314|consen 213 ETYVRWSPKGT-YLVTFH--KQGIALWGG--------ESFDRIQRFY-----H-PGVQFIDFSPNEK-YLVTYSPEPIIV 274 (698)
T ss_pred eeeEEecCCce-EEEEEe--ccceeeecC--------ccHHHHHhcc-----C-CCceeeecCCccc-eEEEecCCcccc
Confidence 45599999997 566665 256888965 2222233331 2 2688899999998 8888772
Q ss_pred ------CCcEEEEECCCCCcC-ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc--cceeecCCccCCC
Q 037120 233 ------HGVVNIWDRRVGVLP-SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT--SAPFHNHKEVCHL 303 (489)
Q Consensus 233 ------dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~~~ 303 (489)
...++|||+++|... ....+......-.-+.||.|+++++.-.. ..|.||+..+... .+.++- ..
T Consensus 275 ~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki--~g--- 348 (698)
T KOG2314|consen 275 EEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKI--SG--- 348 (698)
T ss_pred CcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCC--cc---
Confidence 157899999998622 11111111222335789999999877665 5799999887544 223322 23
Q ss_pred CeeEEEeCCCCcceeeccccceeeccceeEE---------------------EeCCCCCeEEEEEecCCceEEEEeeccc
Q 037120 304 PLTSLKLASMLEKIGTLKAQSKIVSQEIHSI---------------------DLDPSCSYQLAFHLDDGWSGVLDVYNSR 362 (489)
Q Consensus 304 ~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~---------------------~~~p~~~~~~~~~~~~~w~~~~~~~~~~ 362 (489)
|....|+|.+..++--..+.......+.-+ .+..+|.++........=.+ ..|.
T Consensus 349 -Ir~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~----~~g~ 423 (698)
T KOG2314|consen 349 -IRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSK----VKGQ 423 (698)
T ss_pred -ccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeecccc----ccce
Confidence 889999999888854333332222333222 23333333332211111000 0000
Q ss_pred eeeecCCCCCCcC-CCCcccccc----CCCcceeecCCcEEEEeecCCC--cEEEEeccCCCCCCeeeccCcccchhhHh
Q 037120 363 VSHVHCPPPAWLS-DSNNSADQL----HLRKPSWLSTNSIYAVGSSSDH--GIHLLDFFPGSSSPSHVDYNEDIESLSER 435 (489)
Q Consensus 363 ~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~l~sgs~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 435 (489)
..++. .|.. ..+.+.+.. .+-..+|-|.|.++++..+.+. ++.+|.+.+....+ +.+..+.
T Consensus 424 f~n~e----IfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~------~lVk~~d-- 491 (698)
T KOG2314|consen 424 FSNLE----IFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKP------SLVKELD-- 491 (698)
T ss_pred EeeEE----EEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCch------hhhhhhc--
Confidence 00000 0000 001111111 1234789999999988766664 78888887541111 2222222
Q ss_pred hhhcccCCcccCCCceEEEEeeCCCCeEEecc---CcceeEEEecc
Q 037120 436 TKLKKENRFVPLSEGVTACVTHPLNNTIVAGT---KNSSLLVVSQK 478 (489)
Q Consensus 436 ~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs---~dg~i~v~~~~ 478 (489)
....+.+-|+|.|.+++.++ ..|.+.++...
T Consensus 492 ------------k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 492 ------------KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred ------------ccccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 13468899999999777664 46777776543
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2.1e-07 Score=87.57 Aligned_cols=159 Identities=17% Similarity=0.216 Sum_probs=95.6
Q ss_pred ccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcE
Q 037120 147 KHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSR 226 (489)
Q Consensus 147 ~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 226 (489)
.++||... |.+++-- ++++-+++++.| .+|++|.++....+. .. ..+..++..|+.+|+++.|..+.. .
T Consensus 730 nf~GH~~~---iRai~Ai-dNENSFiSASkD-KTVKLWSik~EgD~~-~t----saCQfTY~aHkk~i~~igfL~~lr-~ 798 (1034)
T KOG4190|consen 730 NFTGHQEK---IRAIAAI-DNENSFISASKD-KTVKLWSIKPEGDEI-GT----SACQFTYQAHKKPIHDIGFLADLR-S 798 (1034)
T ss_pred cccCcHHH---hHHHHhc-ccccceeeccCC-ceEEEEEeccccCcc-cc----ceeeeEhhhccCcccceeeeeccc-e
Confidence 35677776 4444432 344578888888 999999996433221 11 112334488999999999998877 5
Q ss_pred EEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEee--cCCEEEEEeC-CCeEEEEEcCCCcccceeecCCccC-C
Q 037120 227 LIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHA--ENQIIFAAGK-HGSIYLWDLRGGRTSAPFHNHKEVC-H 302 (489)
Q Consensus 227 l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~-~ 302 (489)
+++ .||.|++||.-.+............+.+..+..-| +...+++|+. ..+|+++|.|...-...++...... .
T Consensus 799 i~S--cD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn 876 (1034)
T KOG4190|consen 799 IAS--CDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN 876 (1034)
T ss_pred eee--ccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCc
Confidence 554 48999999987654211001111223333333333 4566677745 9999999999877655554322110 1
Q ss_pred CCeeEEEeCCCCccee
Q 037120 303 LPLTSLKLASMLEKIG 318 (489)
Q Consensus 303 ~~v~~l~~~~~~~~i~ 318 (489)
..+++++..+.|..++
T Consensus 877 a~~R~iaVa~~GN~lA 892 (1034)
T KOG4190|consen 877 ALTRAIAVADKGNKLA 892 (1034)
T ss_pred hheeEEEeccCcchhh
Confidence 2266666666665553
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1e-05 Score=78.85 Aligned_cols=179 Identities=10% Similarity=0.008 Sum_probs=103.7
Q ss_pred ceeEEEECCCCcE-EEEEec---CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 98 GISALDFDCKGIY-LVSATR---SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 98 ~V~~~~fs~~g~~-la~g~~---dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
.+..-.|+|||+. ++..+. +..|.++|+.+++.... ... ... +....|+|++..++++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~l---------t~~------~g~---~~~~~~SPDG~~la~~ 250 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKI---------ASS------QGM---LVVSDVSKDGSKLLLT 250 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEE---------ecC------CCc---EEeeEECCCCCEEEEE
Confidence 4668899999985 665444 35688888877433221 000 111 5567899999877776
Q ss_pred EecC-CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCC--cEEEEECCCCCcCcee
Q 037120 174 ASTR-SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG--VVNIWDRRVGVLPSLE 250 (489)
Q Consensus 174 ~~~d-~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~ 250 (489)
.+.+ +..|.++|+..+ .. ..+ ..+........|+|||+.++++....+ .|.++|+.+++.. +
T Consensus 251 ~~~~g~~~Iy~~dl~~g--~~-~~L----------T~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~--r 315 (419)
T PRK04043 251 MAPKGQPDIYLYDTNTK--TL-TQI----------TNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE--Q 315 (419)
T ss_pred EccCCCcEEEEEECCCC--cE-EEc----------ccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE--e
Confidence 6544 245666676322 11 111 111112334579999994444444434 6888888876632 2
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeCC---------CeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCccee
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGKH---------GSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~d---------g~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
.... +. ....|+|+|+.++..+.. ..|.+.|+.++.. ..+... .. .....|+|||+.+.
T Consensus 316 lt~~--g~-~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~----~~~p~~SPDG~~I~ 383 (419)
T PRK04043 316 VVFH--GK-NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GV----NQFPRFSSDGGSIM 383 (419)
T ss_pred CccC--CC-cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CC----cCCeEECCCCCEEE
Confidence 2211 11 124899999998877653 3688888877653 333321 12 33467888887664
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.8e-07 Score=88.15 Aligned_cols=185 Identities=16% Similarity=0.251 Sum_probs=123.6
Q ss_pred eeEEEECCC--CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCccccccc--ccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 99 ISALDFDCK--GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKH--LLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 99 V~~~~fs~~--g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~--~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
|-.+.|+|. -.+-++.+....-.||++.... ....++ -+|... |+.+-|+|+...+++++
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss-------------~~aIef~lhghsra---itd~n~~~q~pdVlatc 133 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS-------------SNAIEFVLHGHSRA---ITDINFNPQHPDVLATC 133 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCC-------------ccceEEEEecCccc---eeccccCCCCCcceeec
Confidence 445566655 3455555555666789887621 122223 345555 88899999999999999
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccC
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 254 (489)
+-| -.+..||++... .-+ .. ...-......++|+-..+ .+++.+..+.|++||++.+..+.. ..++
T Consensus 134 svd-t~vh~wd~rSp~----~p~---ys----~~~w~s~asqVkwnyk~p-~vlasshg~~i~vwd~r~gs~pl~-s~K~ 199 (1081)
T KOG0309|consen 134 SVD-TYVHAWDMRSPH----RPF---YS----TSSWRSAASQVKWNYKDP-NVLASSHGNDIFVWDLRKGSTPLC-SLKG 199 (1081)
T ss_pred ccc-ccceeeeccCCC----cce---ee----eecccccCceeeecccCc-chhhhccCCceEEEeccCCCcceE-Eecc
Confidence 999 999999995321 111 11 122234667899999888 566677788999999999887733 5567
Q ss_pred CCCceeEEEEeec-CCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcc
Q 037120 255 SHGTLNSIQLHAE-NQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEK 316 (489)
Q Consensus 255 h~~~v~~~~~~p~-~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 316 (489)
|...|+.++|+.- -..+.+.+.||+|+.||..+... ...+......||..-++-|-|+.
T Consensus 200 ~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~---e~~~~vtt~~piw~~r~~Pfg~g 259 (1081)
T KOG0309|consen 200 HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT---ESKRTVTTNFPIWRGRYLPFGEG 259 (1081)
T ss_pred cceeeehHHHhhhhhhhhcccCCCCceeeeccccccc---ccceeccccCcceeccccccCce
Confidence 8899999999763 33466777799999999876432 11111111234777777776643
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.7e-05 Score=73.15 Aligned_cols=265 Identities=12% Similarity=0.031 Sum_probs=148.9
Q ss_pred CCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
..-.+..+.|||.|.+|++....| |.+|+......... ..|.. |..+.|+|.+. .|++-
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~~~l~~---------------~~~~~----V~~~~fSP~~k-YL~tw 89 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSKAKLVR---------------FRHPD----VKYLDFSPNEK-YLVTW 89 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccchhheee---------------eecCC----ceecccCcccc-eeeee
Confidence 334588889999999999988765 88998776331110 11222 77799999986 55543
Q ss_pred ecC--------------CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccC--ee-EEEEecCCCcEEEEEeCCCcEE
Q 037120 175 STR--------------SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKG--LS-DLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 175 ~~d--------------~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~-~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
+.. ++.+.+||+..+ .++... .+...+ .+ -+.|+-++. +++-. ....++
T Consensus 90 ~~~pi~~pe~e~sp~~~~n~~~vwd~~sg-----~iv~sf-------~~~~q~~~~Wp~~k~s~~D~-y~ARv-v~~sl~ 155 (561)
T COG5354 90 SREPIIEPEIEISPFTSKNNVFVWDIASG-----MIVFSF-------NGISQPYLGWPVLKFSIDDK-YVARV-VGSSLY 155 (561)
T ss_pred ccCCccChhhccCCccccCceeEEeccCc-----eeEeec-------cccCCcccccceeeeeecch-hhhhh-ccCeEE
Confidence 322 246899999432 232221 222222 34 578888887 55544 356799
Q ss_pred EEECCCCCcC--ceeeccCCCCceeEEEEeecCCE--EEE-----EeCCCeEEEEEcCCCcccceeecCCccCCCCeeEE
Q 037120 238 IWDRRVGVLP--SLELSTGSHGTLNSIQLHAENQI--IFA-----AGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSL 308 (489)
Q Consensus 238 iwd~~~~~~~--~~~~~~~h~~~v~~~~~~p~~~~--l~~-----~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l 308 (489)
|+++ ++... ..+.+. ...|....|+|.++. |+. .+.++++++|.+..++.+.+-.-.+-. =..+
T Consensus 156 i~e~-t~n~~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~----~~qL 228 (561)
T COG5354 156 IHEI-TDNIEEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVS----GVQL 228 (561)
T ss_pred EEec-CCccccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeec----ccEE
Confidence 9997 43321 222222 367888999997443 221 244889999999866653332211111 3467
Q ss_pred EeCCCCcceeecc-----------------------c---cceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccc
Q 037120 309 KLASMLEKIGTLK-----------------------A---QSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSR 362 (489)
Q Consensus 309 ~~~~~~~~i~~~~-----------------------~---~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~ 362 (489)
.|++.|.++.-+. . .......+|..+.|.|.+..+++++.-..- .+..+.-.
T Consensus 229 kW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa--~~s~~~lr 306 (561)
T COG5354 229 KWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPA--SVSVFDLR 306 (561)
T ss_pred EEecCCceEEEEEEEeeecccceeccceEEEEeecccccceeccccccceeeeecccCCceeEEeccccc--ceeecccc
Confidence 7888887762110 0 011235678899999998887766522211 11111111
Q ss_pred eeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCC---CcEEEEeccCC
Q 037120 363 VSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSD---HGIHLLDFFPG 416 (489)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d---~~i~vwd~~~~ 416 (489)
-+-.+.. .+ -.+.++.|+|.+...|+. +-| |.|-+||....
T Consensus 307 ~Nl~~~~----Pe--------~~rNT~~fsp~~r~il~a-gF~nl~gni~i~~~~~r 350 (561)
T COG5354 307 GNLRFYF----PE--------QKRNTIFFSPHERYILFA-GFDNLQGNIEIFDPAGR 350 (561)
T ss_pred cceEEec----CC--------cccccccccCcccEEEEe-cCCccccceEEeccCCc
Confidence 1111110 00 223456677775555554 344 58899988765
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=5e-06 Score=81.74 Aligned_cols=135 Identities=15% Similarity=0.282 Sum_probs=98.7
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCC-----------CcE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVN-----------TSR 226 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----------~~~ 226 (489)
-.++.|+|.| +++-|+ ...|.+-|.+. ++..+.. .-|...|+.+.|.|-. .-+
T Consensus 18 ~~A~Dw~~~G--LiAygs--hslV~VVDs~s--------~q~iqsi----e~h~s~V~~VrWap~~~p~~llS~~~~~ll 81 (1062)
T KOG1912|consen 18 RNAADWSPSG--LIAYGS--HSLVSVVDSRS--------LQLIQSI----ELHQSAVTSVRWAPAPSPRDLLSPSSSQLL 81 (1062)
T ss_pred ccccccCccc--eEEEec--CceEEEEehhh--------hhhhhcc----ccCccceeEEEeccCCCchhccCcccccee
Confidence 4458999986 888888 67999999832 2223333 6688999999998732 226
Q ss_pred EEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeec---C-CEEEEEeCCCeEEEEEcCCCcccceeecCCccCC
Q 037120 227 LIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAE---N-QIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCH 302 (489)
Q Consensus 227 l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~---~-~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~ 302 (489)
|+++...|.|.+||...+. .+..+..|..++..++|-|. . ..+++-....+|.+|+..+|+.+-......+.
T Consensus 82 iAsaD~~GrIil~d~~~~s--~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~i-- 157 (1062)
T KOG1912|consen 82 IASADISGRIILVDFVLAS--VINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEI-- 157 (1062)
T ss_pred EEeccccCcEEEEEehhhh--hhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcc--
Confidence 7778888999999999876 33345678889999999763 3 34555567889999999999876555433333
Q ss_pred CCeeEEEeCCCC
Q 037120 303 LPLTSLKLASML 314 (489)
Q Consensus 303 ~~v~~l~~~~~~ 314 (489)
..++.+.|-.
T Consensus 158 --Ls~f~~DPfd 167 (1062)
T KOG1912|consen 158 --LSCFRVDPFD 167 (1062)
T ss_pred --eeeeeeCCCC
Confidence 6778888754
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.1e-07 Score=57.20 Aligned_cols=37 Identities=22% Similarity=0.513 Sum_probs=34.6
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEE
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWD 284 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd 284 (489)
++..+.+|...|++++|+|++.++++++.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4567789999999999999999999999999999998
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.5e-05 Score=69.30 Aligned_cols=74 Identities=15% Similarity=0.141 Sum_probs=48.2
Q ss_pred ECCCCcEEEEEec----------CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 104 FDCKGIYLVSATR----------SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 104 fs~~g~~la~g~~----------dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
++|||+.|.++.. +..|.|||..+.+.....+.+ +..++. .... -..++++|+++.++++
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p------~~p~~~-~~~~---~~~~~ls~dgk~l~V~ 122 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELP------EGPRFL-VGTY---PWMTSLTPDNKTLLFY 122 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccC------CCchhh-ccCc---cceEEECCCCCEEEEe
Confidence 8999988876655 789999999997766542110 110100 0011 2348999999866665
Q ss_pred EecCCCEEEEEEec
Q 037120 174 ASTRSNVVSIYDIG 187 (489)
Q Consensus 174 ~~~d~g~i~vwd~~ 187 (489)
--..++.|.+.|+.
T Consensus 123 n~~p~~~V~VvD~~ 136 (352)
T TIGR02658 123 QFSPSPAVGVVDLE 136 (352)
T ss_pred cCCCCCEEEEEECC
Confidence 54424999999994
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.55 E-value=7.7e-05 Score=65.50 Aligned_cols=221 Identities=16% Similarity=0.259 Sum_probs=121.5
Q ss_pred EEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEE
Q 037120 102 LDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVV 181 (489)
Q Consensus 102 ~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i 181 (489)
++.+.+|++||.-. |..|.|=.......... ..+....+..-+=.-++|+||+. +|+.+... |+|
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~------------~kcqVpkD~~PQWRkl~WSpD~t-lLa~a~S~-G~i 67 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSII------------GKCQVPKDPNPQWRKLAWSPDCT-LLAYAEST-GTI 67 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCCchhee------------EEEecCCCCCchheEEEECCCCc-EEEEEcCC-CeE
Confidence 56778998888764 66777766554211110 01111222222245699999986 67666666 999
Q ss_pred EEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCC-----CcEEEEEeCCCcEEEEECCCCCcC------cee
Q 037120 182 SIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVN-----TSRLIASDTHGVVNIWDRRVGVLP------SLE 250 (489)
Q Consensus 182 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-----~~~l~s~s~dg~i~iwd~~~~~~~------~~~ 250 (489)
++||+... . ...+.+...+ ...-..+|..+.|.+.. ...|+.-..+|.++-|-+..+... .+.
T Consensus 68 ~vfdl~g~--~-lf~I~p~~~~---~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs 141 (282)
T PF15492_consen 68 RVFDLMGS--E-LFVIPPAMSF---PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS 141 (282)
T ss_pred EEEecccc--e-eEEcCccccc---CCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE
Confidence 99999421 0 1122221111 01234577778776543 235777778888887776432111 122
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeC-CCe----------EEEEEcCCCcccce-eecCCccCCCCeeEE----EeCCCC
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGK-HGS----------IYLWDLRGGRTSAP-FHNHKEVCHLPLTSL----KLASML 314 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~----------i~lwd~~~~~~~~~-~~~~~~~~~~~v~~l----~~~~~~ 314 (489)
....+...|+++.++|..++|++||. ... +..|-+-++..-.. .....+. +... .+.
T Consensus 142 f~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~----~~~~~~~~~~~--- 214 (282)
T PF15492_consen 142 FSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDD----ITASSKRRGLL--- 214 (282)
T ss_pred ecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCcc----cccccccccee---
Confidence 22244678999999999999998876 221 33444443332111 1111111 1100 000
Q ss_pred cceeecccc--ceeeccceeEEEeCCCCCeEEEEEecCC
Q 037120 315 EKIGTLKAQ--SKIVSQEIHSIDLDPSCSYQLAFHLDDG 351 (489)
Q Consensus 315 ~~i~~~~~~--~~~~~~~i~~~~~~p~~~~~~~~~~~~~ 351 (489)
.+.+++.. .......|..|.+|||+..+++.+..+.
T Consensus 215 -~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~ 252 (282)
T PF15492_consen 215 -RIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGS 252 (282)
T ss_pred -eccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCe
Confidence 01111111 1123567899999999999999998887
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.5e-05 Score=72.48 Aligned_cols=273 Identities=15% Similarity=0.168 Sum_probs=153.5
Q ss_pred CCceeEEEECCCCcEEEEEecCCe---------------EEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeE
Q 037120 96 KPGISALDFDCKGIYLVSATRSGC---------------LTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDA 160 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~~dg~---------------i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~ 160 (489)
+..|.-+.|+|.++||.+=+.-+. +.|||+.++..+..-. ... ....+++ -
T Consensus 71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~------~~~------q~~~~Wp--~ 136 (561)
T COG5354 71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFN------GIS------QPYLGWP--V 136 (561)
T ss_pred cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeecc------ccC------Ccccccc--e
Confidence 356899999999999998765444 8899999866665310 111 1111221 3
Q ss_pred EEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCc-EEEE-----EeCCC
Q 037120 161 VRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTS-RLIA-----SDTHG 234 (489)
Q Consensus 161 v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s-----~s~dg 234 (489)
+.|+-+..+ ++-.. ...+.|+++...... .+.... -...|....|+|.+++ .|+. .+.++
T Consensus 137 ~k~s~~D~y-~ARvv--~~sl~i~e~t~n~~~-----~p~~~l------r~~gi~dFsisP~~n~~~la~~tPEk~~kpa 202 (561)
T COG5354 137 LKFSIDDKY-VARVV--GSSLYIHEITDNIEE-----HPFKNL------RPVGILDFSISPEGNHDELAYWTPEKLNKPA 202 (561)
T ss_pred eeeeecchh-hhhhc--cCeEEEEecCCcccc-----Cchhhc------cccceeeEEecCCCCCceEEEEccccCCCCc
Confidence 778877653 33333 258999997221110 111100 1246788888887542 3343 24678
Q ss_pred cEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-----------CCeEEEEEcCCCcccceeecCCccCCC
Q 037120 235 VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-----------HGSIYLWDLRGGRTSAPFHNHKEVCHL 303 (489)
Q Consensus 235 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-----------dg~i~lwd~~~~~~~~~~~~~~~~~~~ 303 (489)
++++|.+..++....+.+. ...-..+.|++.|+++++--. ...++|++++... +.......+
T Consensus 203 ~~~i~sIp~~s~l~tk~lf--k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~---- 275 (561)
T COG5354 203 MVRILSIPKNSVLVTKNLF--KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKD---- 275 (561)
T ss_pred EEEEEEccCCCeeeeeeeE--eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccc----
Confidence 8999998865422222221 223346788999987654311 3568888887433 222223344
Q ss_pred CeeEEEeCCCCcceeeccc---------------cceeeccceeEEEeCCCCCeEEEEEecCCc--eEEEEeeccceeee
Q 037120 304 PLTSLKLASMLEKIGTLKA---------------QSKIVSQEIHSIDLDPSCSYQLAFHLDDGW--SGVLDVYNSRVSHV 366 (489)
Q Consensus 304 ~v~~l~~~~~~~~i~~~~~---------------~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w--~~~~~~~~~~~~~~ 366 (489)
||-.++|.|.+..++.+.. ........-..+.|+|.+++++..+.++.. ..+++.....+...
T Consensus 276 pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~ 355 (561)
T COG5354 276 PVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAG 355 (561)
T ss_pred cceeeeecccCCceeEEecccccceeecccccceEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEE
Confidence 4999999999987754220 001112333456789999999998877752 12222211111000
Q ss_pred cCCCCCCcCCCCccccccCCCcceeecCCcEEEEee-----cCCCcEEEEeccCC
Q 037120 367 HCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGS-----SSDHGIHLLDFFPG 416 (489)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg-----s~d~~i~vwd~~~~ 416 (489)
.+...+ .....|+|++..|.+.- -.|+.|.|||+...
T Consensus 356 -----~~~~~n--------~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 356 -----AFNGLN--------TSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred -----EeecCC--------ceEeeccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 010110 11234666666665542 24789999999866
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.6e-07 Score=77.55 Aligned_cols=74 Identities=19% Similarity=0.496 Sum_probs=65.1
Q ss_pred CeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEee-cCCEEEEEeCCCeEEEEEcCC
Q 037120 213 GLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHA-ENQIIFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 213 ~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~~~~~dg~i~lwd~~~ 287 (489)
.|.+++-+|..++++++|+.||.+-+||.|....+ ...+..|+.+|+.+-|+| ++..|++++.||.+-.||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p-~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP-VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccch-HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 48999999988888999999999999999987655 446779999999999999 467899999999999999875
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.6e-07 Score=80.11 Aligned_cols=87 Identities=18% Similarity=0.263 Sum_probs=69.3
Q ss_pred cccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCc---CceeeccCCCCceeEEEEee-cCCEEEEEeCCCeEEEEEc
Q 037120 210 VQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVL---PSLELSTGSHGTLNSIQLHA-ENQIIFAAGKHGSIYLWDL 285 (489)
Q Consensus 210 h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~h~~~v~~~~~~p-~~~~l~~~~~dg~i~lwd~ 285 (489)
-...|.++.|...++ ++..|...|.|..+|+|...+ .+.+.+ -|.+.|+|+..-. ++++|++.+-+|+|++||+
T Consensus 251 sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDL 328 (425)
T ss_pred cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeee
Confidence 345788899998888 999999999999999998621 133333 6889999998877 7888888888999999999
Q ss_pred CCCcc---cceeecCC
Q 037120 286 RGGRT---SAPFHNHK 298 (489)
Q Consensus 286 ~~~~~---~~~~~~~~ 298 (489)
|.-++ +.+.++|.
T Consensus 329 R~~K~~~~V~qYeGHv 344 (425)
T KOG2695|consen 329 RATKCKKSVMQYEGHV 344 (425)
T ss_pred hhhhcccceeeeeccc
Confidence 98776 56666654
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.4e-05 Score=72.82 Aligned_cols=185 Identities=12% Similarity=0.115 Sum_probs=123.8
Q ss_pred EECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEE-eeCCCCCEEEEEecCCCEE
Q 037120 103 DFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVR-WNLANQDEVACASTRSNVV 181 (489)
Q Consensus 103 ~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~-~~~~~~~~l~s~~~d~g~i 181 (489)
..+.||+.++-. .-|.|.+||.++.....-+... .+....+. ..-..++.-+. |++....+++..+ .|+.
T Consensus 273 ~~nsDGkrIvFq-~~GdIylydP~td~lekldI~l---pl~rk~k~---~k~~~pskyledfa~~~Gd~ia~VS--RGka 343 (668)
T COG4946 273 NANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGL---PLDRKKKQ---PKFVNPSKYLEDFAVVNGDYIALVS--RGKA 343 (668)
T ss_pred ccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCC---cccccccc---ccccCHHHhhhhhccCCCcEEEEEe--cCcE
Confidence 345667766543 4577999999885444322100 00000000 00000011122 5555556888888 6888
Q ss_pred EEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCC-cEEEEECCCCCcCceeeccCCCCcee
Q 037120 182 SIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG-VVNIWDRRVGVLPSLELSTGSHGTLN 260 (489)
Q Consensus 182 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg-~i~iwd~~~~~~~~~~~~~~h~~~v~ 260 (489)
.|.+...+ .++ + .+|...|.-..+..+++ -++.|..|| .+-|+|.++++ ++.+...-+.|.
T Consensus 344 Fi~~~~~~-----~~i---q------v~~~~~VrY~r~~~~~e-~~vigt~dgD~l~iyd~~~~e---~kr~e~~lg~I~ 405 (668)
T COG4946 344 FIMRPWDG-----YSI---Q------VGKKGGVRYRRIQVDPE-GDVIGTNDGDKLGIYDKDGGE---VKRIEKDLGNIE 405 (668)
T ss_pred EEECCCCC-----eeE---E------cCCCCceEEEEEccCCc-ceEEeccCCceEEEEecCCce---EEEeeCCccceE
Confidence 88877322 111 1 45667888888888888 888899999 89999999886 334555568899
Q ss_pred EEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCccee
Q 037120 261 SIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 261 ~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
++..+|+|++++++-....|-+.|+.+++....-+...+. |+.+.|+|+++.++
T Consensus 406 av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~l----Itdf~~~~nsr~iA 459 (668)
T COG4946 406 AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGL----ITDFDWHPNSRWIA 459 (668)
T ss_pred EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccce----eEEEEEcCCceeEE
Confidence 9999999999999988999999999998863333333444 99999999999884
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4e-07 Score=90.41 Aligned_cols=193 Identities=13% Similarity=0.106 Sum_probs=112.1
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccC-----------CCCCCCCCcc--------ccccc----
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCN-----------GTLPGVGLKE--------DQSKH---- 148 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~-----------~~~~~~g~~~--------~~~~~---- 148 (489)
|..+..+-+|++|+-+.++|+.|+..|.|++|++.++..... +++.. |... +...+
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~d-gs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVD-GSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCC-cceeeeeccccCchHHHhccc
Confidence 455667799999999999999999999999999987432211 00000 0000 00000
Q ss_pred ----ccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCC
Q 037120 149 ----LLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT 224 (489)
Q Consensus 149 ----~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 224 (489)
..|+.. .-.++.|+...+..+++... ....|||+.+. ..+ ..+.....+.+..-+...|+|++.
T Consensus 1176 s~~~~~Hsf~--ed~~vkFsn~~q~r~~gt~~--d~a~~YDvqT~-----~~l---~tylt~~~~~~y~~n~a~FsP~D~ 1243 (1516)
T KOG1832|consen 1176 STGGPRHSFD--EDKAVKFSNSLQFRALGTEA--DDALLYDVQTC-----SPL---QTYLTDTVTSSYSNNLAHFSPCDT 1243 (1516)
T ss_pred cccCcccccc--ccceeehhhhHHHHHhcccc--cceEEEecccC-----cHH---HHhcCcchhhhhhccccccCCCcc
Confidence 012211 13345665544333333332 35677777322 111 111111111222336778999988
Q ss_pred cEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCC
Q 037120 225 SRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLP 304 (489)
Q Consensus 225 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~ 304 (489)
+++- || .+||+|..+ .++.+...+..+ .-.|+|+|..++.-+ -|||+|+.+.++......
T Consensus 1244 -LIln---dG--vLWDvR~~~--aIh~FD~ft~~~-~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ld------ 1303 (1516)
T KOG1832|consen 1244 -LILN---DG--VLWDVRIPE--AIHRFDQFTDYG-GGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLD------ 1303 (1516)
T ss_pred -eEee---Cc--eeeeeccHH--HHhhhhhheecc-cccccCCCceEEeec-----hhhhhHHHHHHhcCcccc------
Confidence 6553 44 479999865 444443222111 346999999988866 489999999888777544
Q ss_pred eeEEEeCCCCcce
Q 037120 305 LTSLKLASMLEKI 317 (489)
Q Consensus 305 v~~l~~~~~~~~i 317 (489)
-..+.|+..|..+
T Consensus 1304 qc~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1304 QCAVTFNSTGDVM 1316 (1516)
T ss_pred ceEEEeccCccch
Confidence 4678888888766
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.9e-05 Score=85.55 Aligned_cols=182 Identities=9% Similarity=0.008 Sum_probs=110.5
Q ss_pred eeEEEECC-CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 99 ISALDFDC-KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 99 V~~~~fs~-~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
-..++|+| +|.++++.+.++.|++||..+........ .|....................++|+|++..++++.+.+
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G---~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n 761 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSG---DGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES 761 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEec---CCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC
Confidence 35789999 57777888889999999987743321100 000000000000000111245599999987677777766
Q ss_pred CCEEEEEEeccCCCCCceeeeece----eeeeecCC--------cccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRR----SVTVVGSD--------VQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGV 245 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~----~~~~~~~~--------h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 245 (489)
+.|++||+..+.. ..+.... .....+.. .-..-..+++.++|. ++++-+.++.|++||..++.
T Consensus 762 -~~Irv~D~~tg~~---~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~ 836 (1057)
T PLN02919 762 -SSIRALDLKTGGS---RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKR 836 (1057)
T ss_pred -CeEEEEECCCCcE---EEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCe
Confidence 9999999853321 1100000 00000000 111235789999998 88888899999999998764
Q ss_pred cCceeec-------------cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc
Q 037120 246 LPSLELS-------------TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT 290 (489)
Q Consensus 246 ~~~~~~~-------------~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~ 290 (489)
+.... .+.-.....++++++|+.+++-+.++.|++||+++++.
T Consensus 837 --v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 837 --VTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred --EEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 22111 01123467899999999877777799999999998764
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.7e-07 Score=55.24 Aligned_cols=35 Identities=17% Similarity=0.390 Sum_probs=32.3
Q ss_pred eecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 037120 205 VVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWD 240 (489)
Q Consensus 205 ~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd 240 (489)
.++.+|...|++|+|+|++. +|++++.|+.|++||
T Consensus 5 ~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 5 RTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred EEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence 34588999999999999988 999999999999998
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.00012 Score=66.20 Aligned_cols=102 Identities=16% Similarity=0.145 Sum_probs=65.3
Q ss_pred eEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeee--eceeeeeecCCcccCeeEEEEecCCCcEEEEEe-----
Q 037120 159 DAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLK--TRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD----- 231 (489)
Q Consensus 159 ~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s----- 231 (489)
..++.+|.....++.+-.-.....+||...+... ..+. +.+.| .|| -.|++||. +|++.-
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~--~~~~a~~gRHF----yGH------g~fs~dG~-~LytTEnd~~~ 74 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLL--QRLWAPPGRHF----YGH------GVFSPDGR-LLYTTENDYET 74 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCcee--eEEcCCCCCEE----ecC------EEEcCCCC-EEEEeccccCC
Confidence 3478888766677777666456789998554322 2222 22222 444 47999999 776654
Q ss_pred CCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEE
Q 037120 232 THGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAA 274 (489)
Q Consensus 232 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~ 274 (489)
..|.|-|||...+ ...+..+..|.-.-..+.+.|+|+.|+++
T Consensus 75 g~G~IgVyd~~~~-~~ri~E~~s~GIGPHel~l~pDG~tLvVA 116 (305)
T PF07433_consen 75 GRGVIGVYDAARG-YRRIGEFPSHGIGPHELLLMPDGETLVVA 116 (305)
T ss_pred CcEEEEEEECcCC-cEEEeEecCCCcChhhEEEcCCCCEEEEE
Confidence 3578999999942 22333444444445578899999887776
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.7e-05 Score=74.93 Aligned_cols=98 Identities=10% Similarity=0.077 Sum_probs=62.5
Q ss_pred CeeEEEEecCCCcEEEEEeC---CCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC---CCeEEEEEcC
Q 037120 213 GLSDLAFSAVNTSRLIASDT---HGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK---HGSIYLWDLR 286 (489)
Q Consensus 213 ~v~~~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~---dg~i~lwd~~ 286 (489)
.+....|+|+|+..++..+. +..|.++|+.+++...+. ...+......|+|||+.++.... +..|.++|+.
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt---~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~ 265 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA---SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN 265 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe---cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 56678999999843554332 457999999887643332 23455667889999987766543 4678888988
Q ss_pred CCcccceeecCCccCCCCeeEEEeCCCCccee
Q 037120 287 GGRTSAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
+++. ..+..+... .....|+|||+.++
T Consensus 266 ~g~~-~~LT~~~~~----d~~p~~SPDG~~I~ 292 (419)
T PRK04043 266 TKTL-TQITNYPGI----DVNGNFVEDDKRIV 292 (419)
T ss_pred CCcE-EEcccCCCc----cCccEECCCCCEEE
Confidence 7653 333332222 23346777776554
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.4e-05 Score=66.71 Aligned_cols=152 Identities=13% Similarity=0.052 Sum_probs=99.5
Q ss_pred EEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCC
Q 037120 111 LVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYIS 190 (489)
Q Consensus 111 la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~ 190 (489)
+..++.|.++++.+++.... ....|..... +.+++.++++. ++++.+.. ..|..|.+....
T Consensus 131 ~~i~sndht~k~~~~~~~s~----------------~~~~h~~~~~-~ns~~~snd~~-~~~~Vgds-~~Vf~y~id~~s 191 (344)
T KOG4532|consen 131 LNIASNDHTGKTMVVSGDSN----------------KFAVHNQNLT-QNSLHYSNDPS-WGSSVGDS-RRVFRYAIDDES 191 (344)
T ss_pred eeeccCCcceeEEEEecCcc----------------cceeeccccc-eeeeEEcCCCc-eEEEecCC-CcceEEEeCCcc
Confidence 44556666777776654111 1123433211 67799999986 55555544 899999984332
Q ss_pred CCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce---eeccCCCCceeEEEEeec
Q 037120 191 DEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL---ELSTGSHGTLNSIQLHAE 267 (489)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~~~h~~~v~~~~~~p~ 267 (489)
.. .+. . + ....++.=.+..|+..+. .||++..||++.|||+|....+.. .....|.+.+..+.|++.
T Consensus 192 ey---~~~-~--~---~a~t~D~gF~~S~s~~~~-~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~ 261 (344)
T KOG4532|consen 192 EY---IEN-I--Y---EAPTSDHGFYNSFSENDL-QFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLY 261 (344)
T ss_pred ce---eee-e--E---ecccCCCceeeeeccCcc-eEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCC
Confidence 21 111 1 1 122334456678888887 999999999999999998765422 122268999999999987
Q ss_pred CC--EEEEEeCCCeEEEEEcCCCccc
Q 037120 268 NQ--IIFAAGKHGSIYLWDLRGGRTS 291 (489)
Q Consensus 268 ~~--~l~~~~~dg~i~lwd~~~~~~~ 291 (489)
|. +|+..-.-+.+.+-|+|+++..
T Consensus 262 g~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 262 GLLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred CcceEEEEecCcceEEEEEcccCcee
Confidence 65 3555545788999999998753
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.4e-06 Score=77.76 Aligned_cols=80 Identities=18% Similarity=0.215 Sum_probs=61.9
Q ss_pred ccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEE
Q 037120 149 LLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLI 228 (489)
Q Consensus 149 ~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 228 (489)
.||.+. ++.|+|+||++ .++++..| ..|+|-..... ..+ ..| +.||+.-|..++..++. .|+
T Consensus 148 lGhvSm---l~dVavS~D~~-~IitaDRD-EkIRvs~ypa~-----f~I---esf---clGH~eFVS~isl~~~~--~Ll 209 (390)
T KOG3914|consen 148 LGHVSM---LLDVAVSPDDQ-FIITADRD-EKIRVSRYPAT-----FVI---ESF---CLGHKEFVSTISLTDNY--LLL 209 (390)
T ss_pred hhhhhh---hheeeecCCCC-EEEEecCC-ceEEEEecCcc-----cch---hhh---ccccHhheeeeeeccCc--eee
Confidence 456666 88899999985 88888888 89998877211 111 111 27899999999987644 589
Q ss_pred EEeCCCcEEEEECCCCCc
Q 037120 229 ASDTHGVVNIWDRRVGVL 246 (489)
Q Consensus 229 s~s~dg~i~iwd~~~~~~ 246 (489)
++|.|++|++||+++++.
T Consensus 210 S~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 210 SGSGDKTLRLWDITSGKL 227 (390)
T ss_pred ecCCCCcEEEEecccCCc
Confidence 999999999999999873
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.1e-06 Score=73.59 Aligned_cols=75 Identities=17% Similarity=0.312 Sum_probs=62.3
Q ss_pred ceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcE
Q 037120 157 QLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVV 236 (489)
Q Consensus 157 ~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i 236 (489)
.|++++-+|..++++++|+.| |.+.+||.+... - ....+..|...++.+.|+|.++..|+++++||.+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~d-g~~~l~d~rn~~-~----------p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGsl 248 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDD-GIVGLWDARNVA-M----------PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSL 248 (319)
T ss_pred cchhhhCCcccccEEEEecCC-CeEEEEEccccc-c----------hHHHHHHhhhhhhheeccCCCchheeEecCCCcE
Confidence 388899999988888888888 999999995431 1 1112367999999999999999899999999999
Q ss_pred EEEECCC
Q 037120 237 NIWDRRV 243 (489)
Q Consensus 237 ~iwd~~~ 243 (489)
..||..+
T Consensus 249 w~wdas~ 255 (319)
T KOG4714|consen 249 WHWDAST 255 (319)
T ss_pred EEEcCCC
Confidence 9999874
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.4e-06 Score=76.56 Aligned_cols=191 Identities=10% Similarity=0.151 Sum_probs=116.3
Q ss_pred CceeEEEECCCC--cEEEEEecCCeEEEEeCCCcc--cccC-CCCCC-----CC-----------Cccccccc-------
Q 037120 97 PGISALDFDCKG--IYLVSATRSGCLTVHDFESLY--YQCN-GTLPG-----VG-----------LKEDQSKH------- 148 (489)
Q Consensus 97 ~~V~~~~fs~~g--~~la~g~~dg~i~vwd~~~~~--~~~~-~~~~~-----~g-----------~~~~~~~~------- 148 (489)
+.|..|.|-.++ ..++..+.|.+|++|.+.... .+.. +.+.+ .| .+..|...
T Consensus 86 EKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r 165 (460)
T COG5170 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR 165 (460)
T ss_pred HHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce
Confidence 347888887653 456677789999999876531 1111 10000 00 11111111
Q ss_pred ---ccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCc
Q 037120 149 ---LLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTS 225 (489)
Q Consensus 149 ---~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 225 (489)
..|... |.++.|+.+.+ .++++. +=.|.+|++...... -.+...+ .+.+..-+..|++..|+|...+
T Consensus 166 vyaNaH~yh---iNSiS~NsD~e-t~lSaD--dLrINLWnl~i~D~s--FnIVDiK--P~nmeeLteVItSaeFhp~~cn 235 (460)
T COG5170 166 VYANAHPYH---INSISFNSDKE-TLLSAD--DLRINLWNLEIIDGS--FNIVDIK--PHNMEELTEVITSAEFHPEMCN 235 (460)
T ss_pred eccccceeE---eeeeeecCchh-eeeecc--ceeeeeccccccCCc--eEEEecc--CccHHHHHHHHhhcccCHhHcc
Confidence 123334 88899999875 566665 589999998533221 1111110 0111333457899999999888
Q ss_pred EEEEEeCCCcEEEEECCCCCcC-----cee---------eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-
Q 037120 226 RLIASDTHGVVNIWDRRVGVLP-----SLE---------LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT- 290 (489)
Q Consensus 226 ~l~s~s~dg~i~iwd~~~~~~~-----~~~---------~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~- 290 (489)
+|...+..|.|++-|+|..... ... .+..-...|..+.|+++|+++++-.. -+|+|||.+..+.
T Consensus 236 ~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~p 314 (460)
T COG5170 236 VFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNP 314 (460)
T ss_pred eEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCC
Confidence 8888888999999999954211 000 11122356789999999999877544 5899999998554
Q ss_pred cceeecCC
Q 037120 291 SAPFHNHK 298 (489)
Q Consensus 291 ~~~~~~~~ 298 (489)
++++..|.
T Consensus 315 ikTi~~h~ 322 (460)
T COG5170 315 IKTIPMHC 322 (460)
T ss_pred ceeechHH
Confidence 66665543
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.6e-05 Score=72.13 Aligned_cols=240 Identities=13% Similarity=0.074 Sum_probs=144.5
Q ss_pred cccCCCceeEEEECCCCcEEEEEec-CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCC---
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATR-SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLAN--- 167 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~-dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~--- 167 (489)
|..|...|.+++.+.+|.++++++. |..+++||+++.....-. .+...+ ..+.|....
T Consensus 49 FraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dminmi------KL~~lP------------g~a~wv~skGd~ 110 (558)
T KOG0882|consen 49 FRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMI------KLVDLP------------GFAEWVTSKGDK 110 (558)
T ss_pred hHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhc------ccccCC------------CceEEecCCCCe
Confidence 3344445888889999999999888 999999999874333210 011111 114443221
Q ss_pred CCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCC-Cc
Q 037120 168 QDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVG-VL 246 (489)
Q Consensus 168 ~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~ 246 (489)
..+++.+..+++.+.|+|-.....+. .... .-|..+|..+.+.+.+. .+++....|.|..|..... +.
T Consensus 111 ~s~IAVs~~~sg~i~VvD~~~d~~q~----~~fk------klH~sPV~~i~y~qa~D-s~vSiD~~gmVEyWs~e~~~qf 179 (558)
T KOG0882|consen 111 ISLIAVSLFKSGKIFVVDGFGDFCQD----GYFK------KLHFSPVKKIRYNQAGD-SAVSIDISGMVEYWSAEGPFQF 179 (558)
T ss_pred eeeEEeecccCCCcEEECCcCCcCcc----ceec------ccccCceEEEEeecccc-ceeeccccceeEeecCCCcccC
Confidence 12556665566999999985433221 0111 34889999999999999 8899999999999987631 11
Q ss_pred C---c-ee--------eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccC------CCCeeEE
Q 037120 247 P---S-LE--------LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVC------HLPLTSL 308 (489)
Q Consensus 247 ~---~-~~--------~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~------~~~v~~l 308 (489)
+ . +. .+.-......++.|+|++..+.+-+.|..|++++.++|+.++.+....... ...+..+
T Consensus 180 Pr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~V 259 (558)
T KOG0882|consen 180 PRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHV 259 (558)
T ss_pred ccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhcccccccccee
Confidence 1 0 00 011223567899999999999998999999999999999877665321100 0113333
Q ss_pred EeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceee
Q 037120 309 KLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSH 365 (489)
Q Consensus 309 ~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~ 365 (489)
.|. +.++.-+...+.....-..+.|+..+.+++..+.-+ .+++++.++.+.+
T Consensus 260 elg---RRmaverelek~~~~~~~~~~fdes~~flly~t~~g--ikvin~~tn~v~r 311 (558)
T KOG0882|consen 260 ELG---RRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG--IKVINLDTNTVVR 311 (558)
T ss_pred ehh---hhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee--EEEEEeecCeEEE
Confidence 322 122211111122233445677888888877554322 1344444444333
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.4e-07 Score=87.18 Aligned_cols=191 Identities=15% Similarity=0.204 Sum_probs=121.8
Q ss_pred CceeEEEECCCC--cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 97 PGISALDFDCKG--IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 97 ~~V~~~~fs~~g--~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
+.+.|++...+. ..+++|..+|.|.+-.+........+ ...++... +++++|++-....|++|
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E------~tp~~ar~---------Ct~lAwneLDtn~LAag 121 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAE------VTPGYARP---------CTSLAWNELDTNHLAAG 121 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccce------eccccccc---------ccccccccccHHHHHhh
Confidence 458888877654 57899999999999988763322111 11222222 89999999877788877
Q ss_pred ecC---CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 175 STR---SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 175 ~~d---~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
-.. +-.+.|||+...-..|..... + . .+--...++++|..+.+ ++++|.....++++|+|.....+
T Consensus 122 ldkhrnds~~~Iwdi~s~ltvPke~~~----f--s-~~~l~gqns~cwlrd~k-lvlaGm~sr~~~ifdlRqs~~~~--- 190 (783)
T KOG1008|consen 122 LDKHRNDSSLKIWDINSLLTVPKESPL----F--S-SSTLDGQNSVCWLRDTK-LVLAGMTSRSVHIFDLRQSLDSV--- 190 (783)
T ss_pred hhhhcccCCccceecccccCCCccccc----c--c-cccccCccccccccCcc-hhhcccccchhhhhhhhhhhhhh---
Confidence 421 468999999544222211111 1 0 11223566899997777 88999999999999999542111
Q ss_pred ccCCCCceeEEEEee-cCCEEEEEeCCCeEEEEE-cCCCcc-cceeecCCccCCCCeeEEEeCCCC
Q 037120 252 STGSHGTLNSIQLHA-ENQIIFAAGKHGSIYLWD-LRGGRT-SAPFHNHKEVCHLPLTSLKLASML 314 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p-~~~~l~~~~~dg~i~lwd-~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~ 314 (489)
..-.+..+..+..+| .+.+ ++...||.|.+|| .++.+. +..+.......+..+..++|+|..
T Consensus 191 ~svnTk~vqG~tVdp~~~nY-~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr 255 (783)
T KOG1008|consen 191 SSVNTKYVQGITVDPFSPNY-FCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR 255 (783)
T ss_pred hhhhhhhcccceecCCCCCc-eeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence 112234566788889 5555 5555699999999 555444 333332222222448999999976
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00042 Score=65.00 Aligned_cols=191 Identities=10% Similarity=0.131 Sum_probs=107.4
Q ss_pred eeEEEECCCCcEEEEEe-c-CCeEEEEeCCCcccccCCCCCCCCCc--ccccccccCCCCCC------------ceeEE-
Q 037120 99 ISALDFDCKGIYLVSAT-R-SGCLTVHDFESLYYQCNGTLPGVGLK--EDQSKHLLHIPLPQ------------QLDAV- 161 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~-~-dg~i~vwd~~~~~~~~~~~~~~~g~~--~~~~~~~~h~~~~~------------~V~~v- 161 (489)
-..++++|||++|.... . +..|.|.|+.+.+....-+-++-... .....+..|...+. .+...
T Consensus 107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~ 186 (352)
T TIGR02658 107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTE 186 (352)
T ss_pred cceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeee
Confidence 34789999999998776 3 78999999998765543111100000 00000000000000 00111
Q ss_pred -------------EeeC-CCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEE
Q 037120 162 -------------RWNL-ANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRL 227 (489)
Q Consensus 162 -------------~~~~-~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 227 (489)
.|.+ ++. .+.... .|+|.+.|+..........+.....-...-.-....+.-++++++++.++
T Consensus 187 vf~~~~~~v~~rP~~~~~dg~-~~~vs~--eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly 263 (352)
T TIGR02658 187 VFHPEDEYLINHPAYSNKSGR-LVWPTY--TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY 263 (352)
T ss_pred eecCCccccccCCceEcCCCc-EEEEec--CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence 2234 554 444444 38999999743322211111111000000011334555699999999444
Q ss_pred EEE---------eCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCC-EEEEEeC-CCeEEEEEcCCCcccceee
Q 037120 228 IAS---------DTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQ-IIFAAGK-HGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 228 ~s~---------s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~~~~~-dg~i~lwd~~~~~~~~~~~ 295 (489)
+.. ...+.|.++|..+.+ .+..+. -...+..++++||++ +|++... ++.|.++|..+++.+..+.
T Consensus 264 V~~~~~~~~thk~~~~~V~ViD~~t~k--vi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 264 LLADQRAKWTHKTASRFLFVVDAKTGK--RLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEecCCccccccCCCCEEEEEECCCCe--EEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 423 122589999999876 443332 235788999999999 8887764 8999999999998887773
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0012 Score=64.11 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=63.8
Q ss_pred CcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC
Q 037120 209 DVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGG 288 (489)
Q Consensus 209 ~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~ 288 (489)
.....|.+++++|+.. .++.|+.||.|.+||...+... .....-..+.++|+|+|..+++|+..|.+.+||+.-.
T Consensus 257 pL~s~v~~ca~sp~E~-kLvlGC~DgSiiLyD~~~~~t~----~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 257 PLPSQVICCARSPSED-KLVLGCEDGSIILYDTTRGVTL----LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred ecCCcceEEecCcccc-eEEEEecCCeEEEEEcCCCeee----eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 4566899999999999 9999999999999999875422 2233456789999999999999999999999998754
Q ss_pred cc
Q 037120 289 RT 290 (489)
Q Consensus 289 ~~ 290 (489)
..
T Consensus 332 pi 333 (545)
T PF11768_consen 332 PI 333 (545)
T ss_pred cc
Confidence 33
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0052 Score=58.94 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=39.5
Q ss_pred CCCCcEEEEEe---------cCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 105 DCKGIYLVSAT---------RSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 105 s~~g~~la~g~---------~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
|||+++++... ..+.+.|||+++.+..... ..... +....|+|++. .++-..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~---------~~~~~---------~~~~~~sP~g~-~~~~v~ 61 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLT---------PPPPK---------LQDAKWSPDGK-YIAFVR 61 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS----------EETT---------BSEEEE-SSST-EEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECc---------CCccc---------cccceeecCCC-eeEEEe
Confidence 57777777642 3567889999985554421 11111 67799999986 555555
Q ss_pred cCCCEEEEEEec
Q 037120 176 TRSNVVSIYDIG 187 (489)
Q Consensus 176 ~d~g~i~vwd~~ 187 (489)
++.|.++++.
T Consensus 62 --~~nly~~~~~ 71 (353)
T PF00930_consen 62 --DNNLYLRDLA 71 (353)
T ss_dssp --TTEEEEESST
T ss_pred --cCceEEEECC
Confidence 4899999874
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0018 Score=65.35 Aligned_cols=196 Identities=14% Similarity=0.146 Sum_probs=119.4
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
.|.| |++.+..+|.|+.+|.|.+.+-.-.. ...+..+... |...-|.-+.+.+|++.+.|
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s~~~---------------~~~fqa~~~s---iv~~L~~~~~~~~L~sv~Ed 86 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSSFQL---------------IRGFQAYEQS---IVQFLYILNKQNFLFSVGED 86 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEeccccee---------------eehheecchh---hhhHhhcccCceEEEEEeec
Confidence 4555 57888999999999988877654311 0111222222 11123344455688887777
Q ss_pred CC----EEEEEEeccCC-CCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCC--CCcCcee
Q 037120 178 SN----VVSIYDIGYIS-DEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRV--GVLPSLE 250 (489)
Q Consensus 178 ~g----~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~~~~~ 250 (489)
++ .|+|||+.... ..+...+...+.+.........++.+++.+.+-+ .++.|-.+|.|..+.-.- ....-..
T Consensus 87 ~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~ 165 (933)
T KOG2114|consen 87 EQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQD 165 (933)
T ss_pred CCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhcccccee
Confidence 55 79999996542 2211333222222222233466889999998877 899999999999884221 1100122
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCCCc-cee
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASMLE-KIG 318 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~-~i~ 318 (489)
....-..+|+.+++..++..++-+.+-..|.+|.+..... +..+..|... +.+..+++... .++
T Consensus 166 ~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~----lnCss~~~~t~qfIc 231 (933)
T KOG2114|consen 166 YSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGIS----LNCSSFSDGTYQFIC 231 (933)
T ss_pred eeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCcc----ceeeecCCCCccEEE
Confidence 2224468999999999988844444456899999884332 4445555545 88888887665 444
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.4e-05 Score=73.02 Aligned_cols=74 Identities=9% Similarity=0.017 Sum_probs=57.4
Q ss_pred cCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 94 FGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
+....|.|++++|+.+.|+.|+.||+|.+||......... ......+.++|+|++. +++.
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-------------------ka~~~P~~iaWHp~ga-i~~V 316 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-------------------KAEFIPTLIAWHPDGA-IFVV 316 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-------------------eecccceEEEEcCCCc-EEEE
Confidence 3456799999999999999999999999999987322211 0111167799999986 7777
Q ss_pred EecCCCEEEEEEecc
Q 037120 174 ASTRSNVVSIYDIGY 188 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~ 188 (489)
|+.. |.+.+||+..
T Consensus 317 ~s~q-GelQ~FD~AL 330 (545)
T PF11768_consen 317 GSEQ-GELQCFDMAL 330 (545)
T ss_pred EcCC-ceEEEEEeec
Confidence 7766 9999999963
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.019 Score=60.58 Aligned_cols=195 Identities=17% Similarity=0.245 Sum_probs=115.1
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..|.++.|--++.-++.+..+|.|.+-|.++..... .+... .+|.+++|+|+.+ +++-...
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei----------------vg~vd--~GI~aaswS~Dee-~l~liT~ 129 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEI----------------VGNVD--NGISAASWSPDEE-LLALITG 129 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccceee----------------eeecc--CceEEEeecCCCc-EEEEEeC
Confidence 359999999999999999999999999887733222 22222 1299999999987 4444443
Q ss_pred CCCEEEEEEecc--CCCCC-----------cee-eee-ceeee------------e-----ecCCcccCeeEEEEecCCC
Q 037120 177 RSNVVSIYDIGY--ISDEP-----------VEV-LKT-RRSVT------------V-----VGSDVQKGLSDLAFSAVNT 224 (489)
Q Consensus 177 d~g~i~vwd~~~--~~~~~-----------~~~-~~~-~~~~~------------~-----~~~~h~~~v~~~~~~~~~~ 224 (489)
+ +++.+-+-.. ....+ ..+ ... ...+. . ....-.+.=++|.|--||+
T Consensus 130 ~-~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~ 208 (1265)
T KOG1920|consen 130 R-QTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGE 208 (1265)
T ss_pred C-cEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCc
Confidence 3 5665543311 00000 000 000 00000 0 0000112234689999998
Q ss_pred cEEEEEe----CC-CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC---CCeEEEEEcCCCcc---cce
Q 037120 225 SRLIASD----TH-GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK---HGSIYLWDLRGGRT---SAP 293 (489)
Q Consensus 225 ~~l~s~s----~d-g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~---dg~i~lwd~~~~~~---~~~ 293 (489)
+|+... .+ ..|++||.+ +.... ......+.-.+++|-|.|..+++... |+.|.+|.-+..+. .-.
T Consensus 209 -~fAVs~~~~~~~~RkirV~drE-g~Lns--~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~ 284 (1265)
T KOG1920|consen 209 -YFAVSFVESETGTRKIRVYDRE-GALNS--TSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLP 284 (1265)
T ss_pred -EEEEEEEeccCCceeEEEeccc-chhhc--ccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccC
Confidence 777633 34 789999977 43111 11122333458999999999888743 77899998543221 222
Q ss_pred eecCCccCCCCeeEEEeCCCCcceee
Q 037120 294 FHNHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 294 ~~~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
+...... +..++|+.++..++.
T Consensus 285 ~p~de~~----ve~L~Wns~sdiLAv 306 (1265)
T KOG1920|consen 285 FPLDEKE----VEELAWNSNSDILAV 306 (1265)
T ss_pred Ccccccc----hheeeecCCCCceee
Confidence 2332333 899999999887764
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0074 Score=58.58 Aligned_cols=152 Identities=13% Similarity=0.056 Sum_probs=78.8
Q ss_pred CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeE-EEeeCCCCCEEEEEecCCCEEEEEE
Q 037120 107 KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDA-VRWNLANQDEVACASTRSNVVSIYD 185 (489)
Q Consensus 107 ~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~-v~~~~~~~~~l~s~~~d~g~i~vwd 185 (489)
++..++.++.+|.+..+|..+++..-.. .... . +.+ .... +. .++.+..+ +.|..||
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~------~~~~---------~---~~~~p~v~--~~-~v~v~~~~-g~l~a~d 161 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRA------KLSS---------E---VLSPPLVA--NG-LVVVRTND-GRLTALD 161 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeee------ccCc---------e---eecCCEEE--CC-EEEEECCC-CeEEEEE
Confidence 4567788888999999998875443211 0000 0 110 1111 22 44445555 9999999
Q ss_pred eccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC---C-----
Q 037120 186 IGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH---G----- 257 (489)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~---~----- 257 (489)
...+... -........ ..+.. . .+.... +. .++.+..++.+..+|.++++.. .+...... .
T Consensus 162 ~~tG~~~--W~~~~~~~~-~~~~~---~-~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~-W~~~~~~~~g~~~~~~~ 230 (377)
T TIGR03300 162 AATGERL--WTYSRVTPA-LTLRG---S-ASPVIA--DG-GVLVGFAGGKLVALDLQTGQPL-WEQRVALPKGRTELERL 230 (377)
T ss_pred cCCCcee--eEEccCCCc-eeecC---C-CCCEEE--CC-EEEEECCCCEEEEEEccCCCEe-eeeccccCCCCCchhhh
Confidence 8544211 000000000 00000 0 111111 23 6777888899999999887632 11110000 0
Q ss_pred -ce-eEEEEeecCCEEEEEeCCCeEEEEEcCCCcccce
Q 037120 258 -TL-NSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAP 293 (489)
Q Consensus 258 -~v-~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~ 293 (489)
.+ .+..+ .+..+++++.+|.++.||..+|+.+..
T Consensus 231 ~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~ 266 (377)
T TIGR03300 231 VDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWK 266 (377)
T ss_pred hccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEe
Confidence 01 11111 356788888899999999999876443
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.011 Score=57.39 Aligned_cols=145 Identities=14% Similarity=0.059 Sum_probs=78.9
Q ss_pred CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEec
Q 037120 108 GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIG 187 (489)
Q Consensus 108 g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~ 187 (489)
+..+.+++.+|.|..+|..+++..-.. .... .. ...... ++. .++.++.+ +.+..+|..
T Consensus 65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~------~~~~--~~---------~~~p~v--~~~-~v~v~~~~-g~l~ald~~ 123 (377)
T TIGR03300 65 GGKVYAADADGTVVALDAETGKRLWRV------DLDE--RL---------SGGVGA--DGG-LVFVGTEK-GEVIALDAE 123 (377)
T ss_pred CCEEEEECCCCeEEEEEccCCcEeeee------cCCC--Cc---------ccceEE--cCC-EEEEEcCC-CEEEEEECC
Confidence 567888889999999998875443210 0000 00 011222 232 55556656 999999984
Q ss_pred cCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCce-----eEE
Q 037120 188 YISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTL-----NSI 262 (489)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v-----~~~ 262 (489)
.+. .+-... +.+ .+.+.-.. .+. .++.++.++.|..||.++++.. .+ .......+ .+.
T Consensus 124 tG~-----~~W~~~-----~~~---~~~~~p~v-~~~-~v~v~~~~g~l~a~d~~tG~~~-W~-~~~~~~~~~~~~~~sp 186 (377)
T TIGR03300 124 DGK-----ELWRAK-----LSS---EVLSPPLV-ANG-LVVVRTNDGRLTALDAATGERL-WT-YSRVTPALTLRGSASP 186 (377)
T ss_pred CCc-----Eeeeec-----cCc---eeecCCEE-ECC-EEEEECCCCeEEEEEcCCCcee-eE-EccCCCceeecCCCCC
Confidence 432 111111 011 11111111 234 5677778999999999988632 21 11111100 111
Q ss_pred EEeecCCEEEEEeCCCeEEEEEcCCCcccc
Q 037120 263 QLHAENQIIFAAGKHGSIYLWDLRGGRTSA 292 (489)
Q Consensus 263 ~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~ 292 (489)
.. .+..++.+..+|.+..+|+++|+.+.
T Consensus 187 ~~--~~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 187 VI--ADGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred EE--ECCEEEEECCCCEEEEEEccCCCEee
Confidence 22 13467788889999999999987643
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0077 Score=54.54 Aligned_cols=182 Identities=14% Similarity=0.042 Sum_probs=105.7
Q ss_pred eeEEEEC-CCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 99 ISALDFD-CKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 99 V~~~~fs-~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
...+++. ++|.++++ ..+ .+.++|..+.+.... ...............+++.+++. +.++....
T Consensus 42 ~~G~~~~~~~g~l~v~-~~~-~~~~~d~~~g~~~~~------------~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~ 106 (246)
T PF08450_consen 42 PNGMAFDRPDGRLYVA-DSG-GIAVVDPDTGKVTVL------------ADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGG 106 (246)
T ss_dssp EEEEEEECTTSEEEEE-ETT-CEEEEETTTTEEEEE------------EEEETTCSCTEEEEEEEE-TTS--EEEEEECC
T ss_pred CceEEEEccCCEEEEE-EcC-ceEEEecCCCcEEEE------------eeccCCCcccCCCceEEEcCCCC-EEEEecCC
Confidence 6677788 67655554 444 456668887433321 00000000112277899999986 66555422
Q ss_pred C-------CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC---
Q 037120 178 S-------NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP--- 247 (489)
Q Consensus 178 ~-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--- 247 (489)
. |.|..++.. . +. ..+. ..-...+.|+|+|+++.++++-+..+.|..+|+......
T Consensus 107 ~~~~~~~~g~v~~~~~~-~--~~-~~~~----------~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~ 172 (246)
T PF08450_consen 107 GGASGIDPGSVYRIDPD-G--KV-TVVA----------DGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSN 172 (246)
T ss_dssp BCTTCGGSEEEEEEETT-S--EE-EEEE----------EEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEE
T ss_pred CccccccccceEEECCC-C--eE-EEEe----------cCcccccceEECCcchheeecccccceeEEEeccccccceee
Confidence 0 345555552 1 10 1111 112357899999999845567778899999998754321
Q ss_pred --ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeC-CCC
Q 037120 248 --SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLA-SML 314 (489)
Q Consensus 248 --~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~ 314 (489)
.+..+....+..-.++++.+|++.++....+.|.++|.+ |+.+..+...... +++++|. ++.
T Consensus 173 ~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~----~t~~~fgg~~~ 237 (246)
T PF08450_consen 173 RRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPR----PTNCAFGGPDG 237 (246)
T ss_dssp EEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSS----EEEEEEESTTS
T ss_pred eeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCC----EEEEEEECCCC
Confidence 111111212346789999999887777779999999988 7877777654334 8888883 443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0067 Score=55.16 Aligned_cols=99 Identities=17% Similarity=0.199 Sum_probs=67.5
Q ss_pred CeeEEEEecCCCcEEEEEeCCCc-EEEEECCCCCcCceeeccCCCCce--eEEEEeecCCEEEEEeC-----CCeEEEEE
Q 037120 213 GLSDLAFSAVNTSRLIASDTHGV-VNIWDRRVGVLPSLELSTGSHGTL--NSIQLHAENQIIFAAGK-----HGSIYLWD 284 (489)
Q Consensus 213 ~v~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~h~~~v--~~~~~~p~~~~l~~~~~-----dg~i~lwd 284 (489)
....++.+|.....++.+-.-|+ ..+||.++++.. ..+....+.- -.-.|+++|++|+++=. .|.|-|||
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~--~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd 83 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLL--QRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYD 83 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCcee--eEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEE
Confidence 34567888966646666665554 678999988733 2222111111 13689999999999833 68999999
Q ss_pred cC-CCcccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 285 LR-GGRTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 285 ~~-~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
.. +.+.+.++..+.-. --.+.+.|||+.+
T Consensus 84 ~~~~~~ri~E~~s~GIG----PHel~l~pDG~tL 113 (305)
T PF07433_consen 84 AARGYRRIGEFPSHGIG----PHELLLMPDGETL 113 (305)
T ss_pred CcCCcEEEeEecCCCcC----hhhEEEcCCCCEE
Confidence 99 55668888877644 5677889999555
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00025 Score=71.51 Aligned_cols=148 Identities=15% Similarity=0.207 Sum_probs=102.0
Q ss_pred CCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC--------
Q 037120 106 CKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR-------- 177 (489)
Q Consensus 106 ~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d-------- 177 (489)
.++++|.+|...|+|.+-|..+.+.+ ..+..|++. |.++... |. +|++++..
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~i--------------ht~~aHs~s---iSDfDv~--GN-lLitCG~S~R~~~l~~ 244 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETI--------------HTFDAHSGS---ISDFDVQ--GN-LLITCGYSMRRYNLAM 244 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCcee--------------eeeeccccc---eeeeecc--CC-eEEEeecccccccccc
Confidence 46789999999999999999984433 334556666 6555543 43 55555432
Q ss_pred CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCc--eeeccCC
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPS--LELSTGS 255 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~h 255 (489)
|.-|+|||++.. +.+.+.... ..-.-+.|+|.-...++.++..|...+-|..+-..+. +......
T Consensus 245 D~FvkVYDLRmm-----ral~PI~~~--------~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~ 311 (1118)
T KOG1275|consen 245 DPFVKVYDLRMM-----RALSPIQFP--------YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPN 311 (1118)
T ss_pred cchhhhhhhhhh-----hccCCcccc--------cCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccC
Confidence 356899999543 223333211 1124477888877789999999999999955443331 2223344
Q ss_pred CCceeEEEEeecCCEEEEEeCCCeEEEEEcC
Q 037120 256 HGTLNSIQLHAENQIIFAAGKHGSIYLWDLR 286 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~ 286 (489)
...+..++++++++.++.|-.+|.|.+|--+
T Consensus 312 ~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 312 GSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred CCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 5669999999999999999999999999733
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0043 Score=56.21 Aligned_cols=151 Identities=12% Similarity=0.074 Sum_probs=93.4
Q ss_pred CCceeEEEECCCCcEEEEEecC--------CeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCC
Q 037120 96 KPGISALDFDCKGIYLVSATRS--------GCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLAN 167 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~~d--------g~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~ 167 (489)
....+.++++++|++.++-... |.|..++... .... ....... -..++|+|++
T Consensus 85 ~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~-~~~~---------~~~~~~~---------pNGi~~s~dg 145 (246)
T PF08450_consen 85 FNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDG-KVTV---------VADGLGF---------PNGIAFSPDG 145 (246)
T ss_dssp TEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTS-EEEE---------EEEEESS---------EEEEEEETTS
T ss_pred cCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCC-eEEE---------EecCccc---------ccceEECCcc
Confidence 3458999999999988876654 4566666662 2111 1111122 5569999999
Q ss_pred CCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC
Q 037120 168 QDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP 247 (489)
Q Consensus 168 ~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 247 (489)
..++++-+.. +.|..+++..... .+...+.+ ..+..-....-.+++..+|. +.++....+.|.++|.+ ++
T Consensus 146 ~~lyv~ds~~-~~i~~~~~~~~~~----~~~~~~~~-~~~~~~~g~pDG~~vD~~G~-l~va~~~~~~I~~~~p~-G~-- 215 (246)
T PF08450_consen 146 KTLYVADSFN-GRIWRFDLDADGG----ELSNRRVF-IDFPGGPGYPDGLAVDSDGN-LWVADWGGGRIVVFDPD-GK-- 215 (246)
T ss_dssp SEEEEEETTT-TEEEEEEEETTTC----CEEEEEEE-EE-SSSSCEEEEEEEBTTS--EEEEEETTTEEEEEETT-SC--
T ss_pred hheeeccccc-ceeEEEecccccc----ceeeeeeE-EEcCCCCcCCCcceEcCCCC-EEEEEcCCCEEEEECCC-cc--
Confidence 7666677766 8999999853322 12212222 11222223467899999998 77777788999999987 55
Q ss_pred ceeeccCCCCceeEEEEe-ecCCEEEEEe
Q 037120 248 SLELSTGSHGTLNSIQLH-AENQIIFAAG 275 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~-p~~~~l~~~~ 275 (489)
.+..+.-....+++++|. ++...|+.++
T Consensus 216 ~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 216 LLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred EEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 333333233578999994 6767776664
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00012 Score=67.01 Aligned_cols=76 Identities=18% Similarity=0.187 Sum_probs=62.2
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
|..++|+|...+++..++.+ ++|+|.|++.. .+. ..+ ..| ..+++++|..+..++|..|...|.|.
T Consensus 196 IrdlafSp~~~GLl~~asl~-nkiki~dlet~-----~~v---ssy----~a~-~~~wSC~wDlde~h~IYaGl~nG~Vl 261 (463)
T KOG1645|consen 196 IRDLAFSPFNEGLLGLASLG-NKIKIMDLETS-----CVV---SSY----IAY-NQIWSCCWDLDERHVIYAGLQNGMVL 261 (463)
T ss_pred hhhhccCccccceeeeeccC-ceEEEEecccc-----eee---ehe----ecc-CCceeeeeccCCcceeEEeccCceEE
Confidence 88899999998899999988 99999999432 111 111 334 68999999999998889999999999
Q ss_pred EEECCCCCcC
Q 037120 238 IWDRRVGVLP 247 (489)
Q Consensus 238 iwd~~~~~~~ 247 (489)
|||+|..+.+
T Consensus 262 vyD~R~~~~~ 271 (463)
T KOG1645|consen 262 VYDMRQPEGP 271 (463)
T ss_pred EEEccCCCch
Confidence 9999988765
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.012 Score=58.98 Aligned_cols=186 Identities=10% Similarity=0.059 Sum_probs=109.0
Q ss_pred CCCceeEEEECCC------------CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEE
Q 037120 95 GKPGISALDFDCK------------GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVR 162 (489)
Q Consensus 95 ~~~~V~~~~fs~~------------g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~ 162 (489)
+...|+.+.|.|. .-+||++...|.|.|||......+.. + ..|.+. |..++
T Consensus 54 h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~--------l------~~~~~~---~qdl~ 116 (1062)
T KOG1912|consen 54 HQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW--------L------SHSNDS---VQDLC 116 (1062)
T ss_pred CccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh--------h------cCCCcc---hhhee
Confidence 3355777777764 23678888899999999987444331 2 223334 56688
Q ss_pred eeC---CCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEE
Q 037120 163 WNL---ANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIW 239 (489)
Q Consensus 163 ~~~---~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iw 239 (489)
|-+ ++..+|++-..- .+|.+|+..++. ...+. ..-.....++.+.|-+...|..-+..|.+.+-
T Consensus 117 W~~~rd~Srd~LlaIh~s-s~lvLwntdtG~----k~Wk~--------~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~ 183 (1062)
T KOG1912|consen 117 WVPARDDSRDVLLAIHGS-STLVLWNTDTGE----KFWKY--------DYSHEILSCFRVDPFDSRHFCVLGSKGFVLSC 183 (1062)
T ss_pred eeeccCcchheeEEecCC-cEEEEEEccCCc----eeecc--------ccCCcceeeeeeCCCCcceEEEEccCceEEEE
Confidence 854 333444443333 799999884431 11111 11223556688888776666666667877777
Q ss_pred ECCCCCcC-----ceeeccCCCC-------------------------ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCc
Q 037120 240 DRRVGVLP-----SLELSTGSHG-------------------------TLNSIQLHAENQIIFAAGKHGSIYLWDLRGGR 289 (489)
Q Consensus 240 d~~~~~~~-----~~~~~~~h~~-------------------------~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~ 289 (489)
+.-..+.+ .+++...|++ ....++|+|.-+.++......-+.++|+.-..
T Consensus 184 ~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~ 263 (1062)
T KOG1912|consen 184 KDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYEC 263 (1062)
T ss_pred eccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhc
Confidence 65432221 1222223322 01135678887777777778889999998766
Q ss_pred ccceeecCCccCCCCeeEEEeCCCC
Q 037120 290 TSAPFHNHKEVCHLPLTSLKLASML 314 (489)
Q Consensus 290 ~~~~~~~~~~~~~~~v~~l~~~~~~ 314 (489)
++....-..+. +.-+.|-|++
T Consensus 264 ~l~vvpier~~----akfv~vlP~~ 284 (1062)
T KOG1912|consen 264 CLAVVPIERGG----AKFVDVLPDP 284 (1062)
T ss_pred eeEEEEeccCC----cceeEeccCC
Confidence 66555543433 4445555554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0032 Score=63.54 Aligned_cols=188 Identities=18% Similarity=0.202 Sum_probs=115.2
Q ss_pred cccCCCc-eeEEEECCCCcEEEEEecCC-----eEEEEeCCCcccccCCCCCCCCCcccccccccCCC--CCCceeEEEe
Q 037120 92 RSFGKPG-ISALDFDCKGIYLVSATRSG-----CLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIP--LPQQLDAVRW 163 (489)
Q Consensus 92 ~~~~~~~-V~~~~fs~~g~~la~g~~dg-----~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~--~~~~V~~v~~ 163 (489)
|.+...+ |..+-...+..+|++.+.|+ .|+||+++....... |. .........|.. +..++.+++.
T Consensus 60 fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s---P~---c~~~~ri~~~~np~~~~p~s~l~V 133 (933)
T KOG2114|consen 60 FQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS---PQ---CLYEHRIFTIKNPTNPSPASSLAV 133 (933)
T ss_pred heecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC---cc---eeeeeeeeccCCCCCCCcceEEEE
Confidence 5555556 55554445557888877765 589999987321110 10 110011111221 2455888999
Q ss_pred eCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 037120 164 NLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRV 243 (489)
Q Consensus 164 ~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 243 (489)
+.+- ..+++|-.| |.|..+.-.-.... .....+. ..-..+|+.+++..++...++.+ .-..|.+|.+..
T Consensus 134 s~~l-~~Iv~Gf~n-G~V~~~~GDi~RDr-----gsr~~~~---~~~~~pITgL~~~~d~~s~lFv~-Tt~~V~~y~l~g 202 (933)
T KOG2114|consen 134 SEDL-KTIVCGFTN-GLVICYKGDILRDR-----GSRQDYS---HRGKEPITGLALRSDGKSVLFVA-TTEQVMLYSLSG 202 (933)
T ss_pred Eccc-cEEEEEecC-cEEEEEcCcchhcc-----ccceeee---ccCCCCceeeEEecCCceeEEEE-ecceeEEEEecC
Confidence 8885 478888877 99998854211100 0111121 22345999999999998433333 346899999884
Q ss_pred CCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceee-cCC
Q 037120 244 GVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH-NHK 298 (489)
Q Consensus 244 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~-~~~ 298 (489)
+.|..+....|...++|..+++....+++++ +..+.+||....+.-..|. +|.
T Consensus 203 -r~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~~g~k 256 (933)
T KOG2114|consen 203 -RTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFEVGEK 256 (933)
T ss_pred -CCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeecCCCe
Confidence 4355656778888999999998766555554 4579999988655555665 544
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0016 Score=66.11 Aligned_cols=189 Identities=13% Similarity=0.176 Sum_probs=119.7
Q ss_pred EEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCe
Q 037120 226 RLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPL 305 (489)
Q Consensus 226 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v 305 (489)
.++-|+--..+..+|+++.+. .+...-..+.|.-+. .+++++++|...|+|.+-|.++.+.++++..|.+. |
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e--~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s----i 220 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKE--TRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS----I 220 (1118)
T ss_pred ceeecchhhheeeeeccccee--eeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeeccccc----e
Confidence 677777777888999998652 222211122344443 46889999999999999999999999999999877 5
Q ss_pred eEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCc-----eEEEEeeccceeeecCCCCCCcCCCCcc
Q 037120 306 TSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGW-----SGVLDVYNSRVSHVHCPPPAWLSDSNNS 380 (489)
Q Consensus 306 ~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (489)
.++. -+|+.+++++..... ...+++|+-+..+...+ ..+..++
T Consensus 221 SDfD----------------------------v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~P-I~~~~~P--- 268 (1118)
T KOG1275|consen 221 SDFD----------------------------VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSP-IQFPYGP--- 268 (1118)
T ss_pred eeee----------------------------ccCCeEEEeecccccccccccchhhhhhhhhhhccCC-cccccCc---
Confidence 5443 344555555544331 24455555444332221 1222221
Q ss_pred ccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCC
Q 037120 381 ADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLN 460 (489)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~ 460 (489)
..+.|+|.-...++..|.-|...+-|..+-...+ ..+.-+. +....+.+.++++++
T Consensus 269 ------~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~------~~~~~v~------------p~~s~i~~fDiSsn~ 324 (1118)
T KOG1275|consen 269 ------QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP------AGVKMVN------------PNGSGISAFDISSNG 324 (1118)
T ss_pred ------hhhhhcccccceEEEEecccceeeccccccCCCc------cceeEEc------------cCCCcceeEEecCCC
Confidence 2345566666666767788888888833220000 0011111 344569999999999
Q ss_pred CeEEeccCcceeEEEecc
Q 037120 461 NTIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 461 ~~i~sgs~dg~i~v~~~~ 478 (489)
+.+|.|..+|.|.+|++.
T Consensus 325 ~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 325 DALAFGDHEGHVNLWADR 342 (1118)
T ss_pred ceEEEecccCcEeeecCC
Confidence 999999999999999944
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00099 Score=66.88 Aligned_cols=107 Identities=15% Similarity=0.165 Sum_probs=77.3
Q ss_pred EEECCCCcEEEEEec----CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 102 LDFDCKGIYLVSATR----SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 102 ~~fs~~g~~la~g~~----dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
..|+|...++|+++. .|.|.||-=.. ....+.....| +++++|+|.. .+|+.|..-
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfadtG-------------EPqr~Vt~P~h------atSLCWHpe~-~vLa~gwe~ 80 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFADTG-------------EPQRDVTYPVH------ATSLCWHPEE-FVLAQGWEM 80 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEecCC-------------CCCccccccee------hhhhccChHH-HHHhhcccc
Confidence 468888888888764 78899984322 11222222222 6779999985 478888877
Q ss_pred CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECC
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRR 242 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 242 (489)
|.+.+|...... .... ...|..+|..+.|+++|. .++|+..-|.|.+|-..
T Consensus 81 -g~~~v~~~~~~e------~htv------~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 81 -GVSDVQKTNTTE------THTV------VETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred -ceeEEEecCCce------eeee------ccCCCCCceeEEecCCCC-eEEEcCCCceeEEEEee
Confidence 999999983321 1111 156899999999999999 99999999999999665
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0045 Score=62.05 Aligned_cols=124 Identities=14% Similarity=0.044 Sum_probs=80.9
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
++|.+++. ..++-|..+ |.|++++..... . .. ..|+.. .-.|. +++||+.||.|.
T Consensus 42 is~~av~~---~~~~~GtH~-g~v~~~~~~~~~-~-------~~------~~~s~~------~~~Ge-y~asCS~DGkv~ 96 (846)
T KOG2066|consen 42 ISCCAVHD---KFFALGTHR-GAVYLTTCQGNP-K-------TN------FDHSSS------ILEGE-YVASCSDDGKVV 96 (846)
T ss_pred HHHHHhhc---ceeeecccc-ceEEEEecCCcc-c-------cc------cccccc------ccCCc-eEEEecCCCcEE
Confidence 55566653 378888887 999999983221 0 11 223333 44677 999999999999
Q ss_pred EEECCCCCcCceeeccCCCCceeEEEEeec-----CCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCC
Q 037120 238 IWDRRVGVLPSLELSTGSHGTLNSIQLHAE-----NQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLAS 312 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~-----~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 312 (489)
|--+-+++..+...+ ..++.+++++|+ .+.+++||.-| +.++.-+-.........|... ++|.++.|..
T Consensus 97 I~sl~~~~~~~~~df---~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e--G~I~~i~W~g 170 (846)
T KOG2066|consen 97 IGSLFTDDEITQYDF---KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGE--GPIHSIKWRG 170 (846)
T ss_pred EeeccCCccceeEec---CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCc--cceEEEEecC
Confidence 998887764332222 478999999998 56788998888 888775543332222222222 3477776653
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0032 Score=63.43 Aligned_cols=139 Identities=15% Similarity=0.183 Sum_probs=91.1
Q ss_pred EEeeCCCCCEEEEEe---cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 161 VRWNLANQDEVACAS---TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 161 v~~~~~~~~~l~s~~---~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
..|+|..+ +++.++ ...|.|.||--... |..-+.. . -.+++++|+|..- .|+.|=.-|.+.
T Consensus 21 ~SWHPseP-lfAVA~fS~er~GSVtIfadtGE---Pqr~Vt~--------P---~hatSLCWHpe~~-vLa~gwe~g~~~ 84 (1416)
T KOG3617|consen 21 SSWHPSEP-LFAVASFSPERGGSVTIFADTGE---PQRDVTY--------P---VHATSLCWHPEEF-VLAQGWEMGVSD 84 (1416)
T ss_pred cccCCCCc-eeEEEEecCCCCceEEEEecCCC---CCccccc--------c---eehhhhccChHHH-HHhhccccceeE
Confidence 57888876 555443 11488888854221 2111110 1 1456799999877 888888999999
Q ss_pred EEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccc--eeecCCccCCCCeeEEEeCCCCc
Q 037120 238 IWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSA--PFHNHKEVCHLPLTSLKLASMLE 315 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~ 315 (489)
+|...+.+ .-.....|..+|..+.|+++|..++++..-|.|.+|-......+. .+-.|.-..+....+..++++++
T Consensus 85 v~~~~~~e--~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~E 162 (1416)
T KOG3617|consen 85 VQKTNTTE--THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDRE 162 (1416)
T ss_pred EEecCCce--eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChH
Confidence 99988766 334455899999999999999999999999999999776422221 12122211112256667777764
Q ss_pred ce
Q 037120 316 KI 317 (489)
Q Consensus 316 ~i 317 (489)
..
T Consensus 163 e~ 164 (1416)
T KOG3617|consen 163 EK 164 (1416)
T ss_pred Hh
Confidence 44
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.046 Score=48.92 Aligned_cols=179 Identities=10% Similarity=0.083 Sum_probs=89.1
Q ss_pred ccCCCceeEEEECCCCc-EEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 93 SFGKPGISALDFDCKGI-YLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~-~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
......++.|+|+|+.. ++|+....+.|..++.+. +... ...+.+. .+.-.|++..++ .+
T Consensus 18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G-~vlr------------~i~l~g~----~D~EgI~y~g~~--~~ 78 (248)
T PF06977_consen 18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDG-KVLR------------RIPLDGF----GDYEGITYLGNG--RY 78 (248)
T ss_dssp TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEE------------EEE-SS-----SSEEEEEE-STT--EE
T ss_pred CCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCC-CEEE------------EEeCCCC----CCceeEEEECCC--EE
Confidence 33445699999999854 666666688887777653 2222 1112221 125568887665 44
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeec-CCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCC--CCcCc
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVG-SDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRV--GVLPS 248 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~~~ 248 (489)
+...+.++.+.++++....... .......+...+ ..++..+-.++|.+.++ .|+.+-+..-..+|.++. .....
T Consensus 79 vl~~Er~~~L~~~~~~~~~~~~--~~~~~~~~~l~~~~~~N~G~EGla~D~~~~-~L~v~kE~~P~~l~~~~~~~~~~~~ 155 (248)
T PF06977_consen 79 VLSEERDQRLYIFTIDDDTTSL--DRADVQKISLGFPNKGNKGFEGLAYDPKTN-RLFVAKERKPKRLYEVNGFPGGFDL 155 (248)
T ss_dssp EEEETTTTEEEEEEE----TT----EEEEEEEE---S---SS--EEEEEETTTT-EEEEEEESSSEEEEEEESTT-SS--
T ss_pred EEEEcCCCcEEEEEEecccccc--chhhceEEecccccCCCcceEEEEEcCCCC-EEEEEeCCCChhhEEEccccCccce
Confidence 4444434999999994332111 111111111111 24667899999999988 666666666666666553 11110
Q ss_pred -eee------ccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCccccee
Q 037120 249 -LEL------STGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPF 294 (489)
Q Consensus 249 -~~~------~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~ 294 (489)
... .......+.+++++|....++.-+. ...|-.+| .+|+.+..+
T Consensus 156 ~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~ 208 (248)
T PF06977_consen 156 FVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSL 208 (248)
T ss_dssp EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEE
T ss_pred eeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEE
Confidence 000 1123355789999997665555555 88999999 566654433
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.043 Score=49.22 Aligned_cols=110 Identities=15% Similarity=0.132 Sum_probs=64.1
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
.+++++.+ +.|..||...+ +.+-... +.+..... ... .+. .++.++.|+.|..+|..+++.. .
T Consensus 38 ~v~~~~~~-~~l~~~d~~tG-----~~~W~~~-----~~~~~~~~---~~~-~~~-~v~v~~~~~~l~~~d~~tG~~~-W 100 (238)
T PF13360_consen 38 RVYVASGD-GNLYALDAKTG-----KVLWRFD-----LPGPISGA---PVV-DGG-RVYVGTSDGSLYALDAKTGKVL-W 100 (238)
T ss_dssp EEEEEETT-SEEEEEETTTS-----EEEEEEE-----CSSCGGSG---EEE-ETT-EEEEEETTSEEEEEETTTSCEE-E
T ss_pred EEEEEcCC-CEEEEEECCCC-----CEEEEee-----ccccccce---eee-ccc-ccccccceeeeEecccCCccee-e
Confidence 45555555 99999998433 2221111 11110111 122 344 5666778889999999998743 2
Q ss_pred eeccCC---CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeec
Q 037120 250 ELSTGS---HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 250 ~~~~~h---~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
+..... ............+..++++..++.|..+|+++|+.+.....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 101 SIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp EEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES
T ss_pred eeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec
Confidence 211111 01222334444588889998899999999999998666654
|
... |
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.05 Score=54.17 Aligned_cols=113 Identities=12% Similarity=0.168 Sum_probs=78.2
Q ss_pred EEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 037120 161 VRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWD 240 (489)
Q Consensus 161 v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd 240 (489)
-++...++ .++.|+.- |.+.+|+-..+. ...... .+-...+..+..+++.. +++.|+..|.|.++.
T Consensus 39 Tc~dst~~-~l~~GsS~-G~lyl~~R~~~~-----~~~~~~------~~~~~~~~~~~vs~~e~-lvAagt~~g~V~v~q 104 (726)
T KOG3621|consen 39 TCVDATEE-YLAMGSSA-GSVYLYNRHTGE-----MRKLKN------EGATGITCVRSVSSVEY-LVAAGTASGRVSVFQ 104 (726)
T ss_pred EEeecCCc-eEEEeccc-ceEEEEecCchh-----hhcccc------cCccceEEEEEecchhH-hhhhhcCCceEEeeh
Confidence 34444554 55555555 999999874321 111111 22334566677787777 899999999999998
Q ss_pred CCCCCcCceeec----cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 037120 241 RRVGVLPSLELS----TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 241 ~~~~~~~~~~~~----~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~ 287 (489)
+.....+..... ..|...|++++|++++..+++|...|+|.+-.+..
T Consensus 105 l~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 105 LNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 887433322121 15788999999999999999999999999887776
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=3.8e-05 Score=74.32 Aligned_cols=162 Identities=17% Similarity=0.195 Sum_probs=101.1
Q ss_pred CceeEEEECCC-CcEEEEEec----CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 97 PGISALDFDCK-GIYLVSATR----SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 97 ~~V~~~~fs~~-g~~la~g~~----dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
...++++|++- .+.||+|-. |..+.|||+.+.-..+.+ .+....+...+..+++|..+.+ ++
T Consensus 103 r~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke------------~~~fs~~~l~gqns~cwlrd~k-lv 169 (783)
T KOG1008|consen 103 RPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKE------------SPLFSSSTLDGQNSVCWLRDTK-LV 169 (783)
T ss_pred ccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcc------------ccccccccccCccccccccCcc-hh
Confidence 34889999985 566777743 678999999985443322 1111111222366799986654 66
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEE-CCCCCcCcee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWD-RRVGVLPSLE 250 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd-~~~~~~~~~~ 250 (489)
.+|... ..++++|++..... .. .-.+..+..+...|-..+++++-. ||.|-+|| .+.-+.+..
T Consensus 170 laGm~s-r~~~ifdlRqs~~~-------~~------svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~- 233 (783)
T KOG1008|consen 170 LAGMTS-RSVHIFDLRQSLDS-------VS------SVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQ- 233 (783)
T ss_pred hccccc-chhhhhhhhhhhhh-------hh------hhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHH-
Confidence 666655 89999999633211 11 113345666778885554777655 99999999 555444422
Q ss_pred eccCCC----CceeEEEEeecCCEEEEE-eC-CCeEEEEEcCC
Q 037120 251 LSTGSH----GTLNSIQLHAENQIIFAA-GK-HGSIYLWDLRG 287 (489)
Q Consensus 251 ~~~~h~----~~v~~~~~~p~~~~l~~~-~~-dg~i~lwd~~~ 287 (489)
.+...+ ..+..++|.|...-+++. .. .++|+++|++.
T Consensus 234 ~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 234 IILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred HHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 222112 358899999976544443 33 78999999874
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0043 Score=62.23 Aligned_cols=145 Identities=10% Similarity=0.145 Sum_probs=90.4
Q ss_pred CCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC----CCCEEEEEecCCCE
Q 037120 105 DCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA----NQDEVACASTRSNV 180 (489)
Q Consensus 105 s~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~----~~~~l~s~~~d~g~ 180 (489)
+-+|.++|+|+.||+|.|..+.+...... ..- ..++.+++++|+ ....+++|+.. |
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~---------~df---------~rpiksial~Pd~~~~~sk~fv~GG~a-g- 139 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQ---------YDF---------KRPIKSIALHPDFSRQQSKQFVSGGMA-G- 139 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCcccee---------Eec---------CCcceeEEeccchhhhhhhheeecCcc-e-
Confidence 45799999999999999998876322221 000 112888999998 34578888866 6
Q ss_pred EEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc-CC----
Q 037120 181 VSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST-GS---- 255 (489)
Q Consensus 181 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~h---- 255 (489)
+.++.-+-..... .+ .+..-.++|.++.|. |. +++=++ |--|++||+.+.+ .+.... .+
T Consensus 140 lvL~er~wlgnk~-~v---------~l~~~eG~I~~i~W~--g~-lIAWan-d~Gv~vyd~~~~~--~l~~i~~p~~~~R 203 (846)
T KOG2066|consen 140 LVLSERNWLGNKD-SV---------VLSEGEGPIHSIKWR--GN-LIAWAN-DDGVKVYDTPTRQ--RLTNIPPPSQSVR 203 (846)
T ss_pred EEEehhhhhcCcc-ce---------eeecCccceEEEEec--Cc-EEEEec-CCCcEEEeccccc--eeeccCCCCCCCC
Confidence 7777653322221 11 123345699999996 55 555554 6679999998865 222222 11
Q ss_pred -CCceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 037120 256 -HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 256 -~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~ 287 (489)
+..-..+.|.++.+ |+.| ...+|+|..++.
T Consensus 204 ~e~fpphl~W~~~~~-LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 204 PELFPPHLHWQDEDR-LVIG-WGDSVKICSIKK 234 (846)
T ss_pred cccCCCceEecCCCe-EEEe-cCCeEEEEEEec
Confidence 11233677876655 4444 444889988884
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.017 Score=51.13 Aligned_cols=101 Identities=19% Similarity=0.236 Sum_probs=62.1
Q ss_pred EEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeee--eceeeeeecCCcccCeeEEEEecCCCcEEEEEeC-----C
Q 037120 161 VRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLK--TRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT-----H 233 (489)
Q Consensus 161 v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~-----d 233 (489)
++|+|....-++-+-.-.-...++|....... .++. ..+.| .+|- .|+|||. +|+..-+ -
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~p--v~~~s~~~RHf----yGHG------vfs~dG~-~LYATEndfd~~r 139 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEP--VTLVSQEGRHF----YGHG------VFSPDGR-LLYATENDFDPNR 139 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCc--EEEecccCcee----eccc------ccCCCCc-EEEeecCCCCCCC
Confidence 77787766556655544234567887543222 1221 22222 3443 6899999 6665543 3
Q ss_pred CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEe
Q 037120 234 GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAG 275 (489)
Q Consensus 234 g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~ 275 (489)
|.|-|||.+.+-. -+-.+..|.-.-..+.|.+||+.++.+.
T Consensus 140 GViGvYd~r~~fq-rvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 140 GVIGVYDAREGFQ-RVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ceEEEEecccccc-eecccccCCcCcceeEEecCCcEEEEeC
Confidence 7899999986422 2334456666667899999999988764
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.029 Score=59.17 Aligned_cols=231 Identities=12% Similarity=0.107 Sum_probs=129.6
Q ss_pred cCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCccc
Q 037120 212 KGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTS 291 (489)
Q Consensus 212 ~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~ 291 (489)
..|.++.|..+.. .++.+..+|.|.+-|..+....++. .-.+.|.+++|+||++.++..+.++++.+-+ .+...+
T Consensus 69 ~~i~s~~fl~d~~-~i~v~~~~G~iilvd~et~~~eivg---~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i 143 (1265)
T KOG1920|consen 69 DEIVSVQFLADTN-SICVITALGDIILVDPETLELEIVG---NVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPI 143 (1265)
T ss_pred cceEEEEEecccc-eEEEEecCCcEEEEcccccceeeee---eccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccch
Confidence 5899999998888 7888888999999998886644443 3368899999999999999998888876543 222222
Q ss_pred ceeecCCcc-CCCCeeEEEeCCCCcce-ee------------ccc-cceeeccceeEEEeCCCCCeEEEEEecCCce-EE
Q 037120 292 APFHNHKEV-CHLPLTSLKLASMLEKI-GT------------LKA-QSKIVSQEIHSIDLDPSCSYQLAFHLDDGWS-GV 355 (489)
Q Consensus 292 ~~~~~~~~~-~~~~v~~l~~~~~~~~i-~~------------~~~-~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~-~~ 355 (489)
..-..+.+- ..+..-.+-|-.....+ ++ .+. ........-.+|.|.-||.++++......-. +-
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk 223 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK 223 (1265)
T ss_pred hccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence 111111000 00112333343322222 00 000 0000112234578888888887755433211 23
Q ss_pred EEeeccc--eeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEee--cCCCcEEEEeccCCCCCCeeeccCcccch
Q 037120 356 LDVYNSR--VSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGS--SSDHGIHLLDFFPGSSSPSHVDYNEDIES 431 (489)
Q Consensus 356 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg--s~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 431 (489)
+.++... .+...-+ .. .....++|-|.|..+.+.. +.|+.|.++.-+.- +. ..
T Consensus 224 irV~drEg~Lns~se~-~~-----------~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL----------~h-g~ 280 (1265)
T KOG1920|consen 224 IRVYDREGALNSTSEP-VE-----------GLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGL----------RH-GE 280 (1265)
T ss_pred EEEecccchhhcccCc-cc-----------ccccceeecCCCCeEeeeeecCCCCcEEEEecCCc----------cc-cc
Confidence 3333221 2211111 01 1123478888877766653 34557888875533 10 01
Q ss_pred hhHhhhhcccCCcccC-CCceEEEEeeCCCCeEEe---ccCcceeEEEeccc
Q 037120 432 LSERTKLKKENRFVPL-SEGVTACVTHPLNNTIVA---GTKNSSLLVVSQKQ 479 (489)
Q Consensus 432 ~~~~~~~~~~~~~~~h-~~~V~~va~~p~~~~i~s---gs~dg~i~v~~~~~ 479 (489)
+.. + .+. ..+|..++|+.++..+|. ..+...|.||..++
T Consensus 281 f~l--------~-~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 281 FVL--------P-FPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred ccc--------C-CcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 100 0 022 234999999999998887 77777799986553
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0058 Score=59.50 Aligned_cols=73 Identities=21% Similarity=0.229 Sum_probs=49.5
Q ss_pred CeeEEEEecCCCcEEEEEe-C--C-CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-CCe--EEEEEc
Q 037120 213 GLSDLAFSAVNTSRLIASD-T--H-GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HGS--IYLWDL 285 (489)
Q Consensus 213 ~v~~~~~~~~~~~~l~s~s-~--d-g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~--i~lwd~ 285 (489)
.+..-+|+|++. .++..+ . . ..+.++|+.++..+.+-.+.++ -..-+|+|||+.|+.... ||. |+++|+
T Consensus 194 ~~~~p~ws~~~~-~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~---~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 194 LILTPAWSPDGK-KLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN---NGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred ceeccccCcCCC-ceEEEEEecCCCceEEEEeccCCccceeeccCCc---cCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 566678999998 444332 2 2 3599999999876644333333 345689999998887766 665 666677
Q ss_pred CCCc
Q 037120 286 RGGR 289 (489)
Q Consensus 286 ~~~~ 289 (489)
.+..
T Consensus 270 ~~~~ 273 (425)
T COG0823 270 DGKN 273 (425)
T ss_pred CCCc
Confidence 7655
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0053 Score=59.74 Aligned_cols=184 Identities=15% Similarity=0.025 Sum_probs=104.2
Q ss_pred CceeEEEECCCCcEEEEEec---C-CeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 97 PGISALDFDCKGIYLVSATR---S-GCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~---d-g~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
..+..-+|+|++..++-.+. . ..+.++++++...... ..+.++.. .-+|+|++..+++
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i------------~~~~g~~~------~P~fspDG~~l~f 254 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI------------LNFNGNNG------APAFSPDGSKLAF 254 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee------------eccCCccC------CccCCCCCCEEEE
Confidence 34777789999988776543 2 3588888887433321 11222222 2789999998888
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCc--EEEEECCCCCcCcee
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGV--VNIWDRRVGVLPSLE 250 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~--i~iwd~~~~~~~~~~ 250 (489)
+...| |...||=+........+ +.. ..+ .-..=.|+|+|+.++++.+..|. |.++|...... +
T Consensus 255 ~~~rd-g~~~iy~~dl~~~~~~~-Lt~-------~~g---i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~---~ 319 (425)
T COG0823 255 SSSRD-GSPDIYLMDLDGKNLPR-LTN-------GFG---INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV---T 319 (425)
T ss_pred EECCC-CCccEEEEcCCCCccee-ccc-------CCc---cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce---e
Confidence 88877 76666544322222111 111 122 12255799999966666666665 45556555432 1
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeC-CCe--EEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCccee
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGK-HGS--IYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~--i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
........-..-.|+|+|++++..+. +|. |.+.|+.++.....+.. ... ...-.|.+++..+.
T Consensus 320 riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~-~~~----~e~ps~~~ng~~i~ 385 (425)
T COG0823 320 RLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS-TYL----NESPSWAPNGRMIM 385 (425)
T ss_pred EeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccc-ccc----CCCCCcCCCCceEE
Confidence 22222222226789999999888875 454 66677766553333322 111 33445666665553
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.002 Score=60.13 Aligned_cols=144 Identities=14% Similarity=0.049 Sum_probs=88.5
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeC-CCcE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT-HGVV 236 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~-dg~i 236 (489)
|+.+.-.. ..++.+++.| |.++.|--... .... ++.-+..|...|.+++.+-++- ++.|.+. |..+
T Consensus 12 i~hv~~tk--a~fiiqASlD-Gh~KFWkKs~i-----sGvE----fVKhFraHL~~I~sl~~S~dg~-L~~Sv~d~Dhs~ 78 (558)
T KOG0882|consen 12 ITHVFPTK--AKFIIQASLD-GHKKFWKKSRI-----SGVE----FVKHFRAHLGVILSLAVSYDGW-LFRSVEDPDHSV 78 (558)
T ss_pred eeeEeeeh--hheEEeeecc-hhhhhcCCCCc-----ccee----ehhhhHHHHHHHHhhhccccce-eEeeccCcccce
Confidence 55554433 3589999999 99999986211 1111 2222366888999999999998 8888777 9999
Q ss_pred EEEECCCCCcC-ceeeccCCCCceeEEEEeecC-C-EEEEEe-CCCeEEEEEcCCCcc-ccee-ecCCccCCCCeeEEEe
Q 037120 237 NIWDRRVGVLP-SLELSTGSHGTLNSIQLHAEN-Q-IIFAAG-KHGSIYLWDLRGGRT-SAPF-HNHKEVCHLPLTSLKL 310 (489)
Q Consensus 237 ~iwd~~~~~~~-~~~~~~~h~~~v~~~~~~p~~-~-~l~~~~-~dg~i~lwd~~~~~~-~~~~-~~~~~~~~~~v~~l~~ 310 (489)
+++|+..-... .++. ..-.+.+.. ..+|.. . .++++. .+|.|.++|-+...+ ...+ .-|. +||..+.+
T Consensus 79 KvfDvEn~DminmiKL-~~lPg~a~w-v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~----sPV~~i~y 152 (558)
T KOG0882|consen 79 KVFDVENFDMINMIKL-VDLPGFAEW-VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHF----SPVKKIRY 152 (558)
T ss_pred eEEEeeccchhhhccc-ccCCCceEE-ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceeccccc----CceEEEEe
Confidence 99999876533 1111 111122221 112221 1 233333 389999999887654 2222 2444 45999988
Q ss_pred CCCCcceeec
Q 037120 311 ASMLEKIGTL 320 (489)
Q Consensus 311 ~~~~~~i~~~ 320 (489)
.+.+..+.+.
T Consensus 153 ~qa~Ds~vSi 162 (558)
T KOG0882|consen 153 NQAGDSAVSI 162 (558)
T ss_pred eccccceeec
Confidence 8887766553
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.15 Score=48.96 Aligned_cols=213 Identities=14% Similarity=0.095 Sum_probs=100.0
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCC---
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGS--- 255 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h--- 255 (489)
+.+.|||+... .+.+.. .....+....|+|+|+ .++... ++.|.+++..++....+. ..+-
T Consensus 23 ~~y~i~d~~~~------~~~~l~-------~~~~~~~~~~~sP~g~-~~~~v~-~~nly~~~~~~~~~~~lT-~dg~~~i 86 (353)
T PF00930_consen 23 GDYYIYDIETG------EITPLT-------PPPPKLQDAKWSPDGK-YIAFVR-DNNLYLRDLATGQETQLT-TDGEPGI 86 (353)
T ss_dssp EEEEEEETTTT------EEEESS--------EETTBSEEEE-SSST-EEEEEE-TTEEEEESSTTSEEEESE-S--TTTE
T ss_pred eeEEEEecCCC------ceEECc-------CCccccccceeecCCC-eeEEEe-cCceEEEECCCCCeEEec-cccceeE
Confidence 67889999432 111111 1135788899999998 766665 689999998776322121 1110
Q ss_pred -------------CCceeEEEEeecCCEEEEEeC-CCeEEEEEcC---CC-c---ccceeecCCccCCCCeeEEE-eCCC
Q 037120 256 -------------HGTLNSIQLHAENQIIFAAGK-HGSIYLWDLR---GG-R---TSAPFHNHKEVCHLPLTSLK-LASM 313 (489)
Q Consensus 256 -------------~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~---~~-~---~~~~~~~~~~~~~~~v~~l~-~~~~ 313 (489)
-+.-..+-|+||+++|+.... +..|+.+.+- .. . .+..+.-.......|...|. ++-.
T Consensus 87 ~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~ 166 (353)
T PF00930_consen 87 YNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLA 166 (353)
T ss_dssp EESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESS
T ss_pred EcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECC
Confidence 012357889999999888865 5555544432 21 1 12222210000001122221 2222
Q ss_pred Ccceeeccc--cceeeccceeEEEeCCCCCeEEEEEecCC--c--eEEEEeeccceeee-cCCCCCCcCCCCccccccCC
Q 037120 314 LEKIGTLKA--QSKIVSQEIHSIDLDPSCSYQLAFHLDDG--W--SGVLDVYNSRVSHV-HCPPPAWLSDSNNSADQLHL 386 (489)
Q Consensus 314 ~~~i~~~~~--~~~~~~~~i~~~~~~p~~~~~~~~~~~~~--w--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 386 (489)
+..+..+.. .......-+..+.+.+++..+++...+.. . ...++...+....+ ......|....
T Consensus 167 ~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~--------- 237 (353)
T PF00930_consen 167 SGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVY--------- 237 (353)
T ss_dssp STCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSS---------
T ss_pred CCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeee---------
Confidence 222211110 01122345678888888874444433333 1 23334433332221 11222444321
Q ss_pred Ccceee-cCCcEEEEeecCCC--cEEEEeccCC
Q 037120 387 RKPSWL-STNSIYAVGSSSDH--GIHLLDFFPG 416 (489)
Q Consensus 387 ~~~~~~-~~~~~~l~sgs~d~--~i~vwd~~~~ 416 (489)
....+. +++..++.....|| .|++.+...+
T Consensus 238 ~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~ 270 (353)
T PF00930_consen 238 DPPHFLGPDGNEFLWISERDGYRHLYLYDLDGG 270 (353)
T ss_dssp SEEEE-TTTSSEEEEEEETTSSEEEEEEETTSS
T ss_pred cccccccCCCCEEEEEEEcCCCcEEEEEccccc
Confidence 123333 66777777767777 5556665555
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00064 Score=40.49 Aligned_cols=36 Identities=28% Similarity=0.614 Sum_probs=31.3
Q ss_pred eeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEE
Q 037120 249 LELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWD 284 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd 284 (489)
...+..|...|.++.|++.+..+++++.|+.+++||
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 334557888999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0013 Score=66.50 Aligned_cols=67 Identities=10% Similarity=0.135 Sum_probs=58.6
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCccee
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
.++.+..|....+|++|+-..++|+.|+..|.|++|++.+|.......+|+.+ |+-+.=+.+|....
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~Sa----vT~vePs~dgs~~L 1159 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSA----VTLVEPSVDGSTQL 1159 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccc----cccccccCCcceee
Confidence 34556678889999999999999999999999999999999988888899877 99998888887663
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.04 Score=55.15 Aligned_cols=74 Identities=8% Similarity=-0.067 Sum_probs=50.6
Q ss_pred CeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC----------ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEE
Q 037120 213 GLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP----------SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYL 282 (489)
Q Consensus 213 ~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~----------~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~l 282 (489)
....+.++|||+..++++..+.+|.|.|+.+.+.. ......- .-.-...+|+++|....+-.-|..|..
T Consensus 322 sPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~k 400 (635)
T PRK02888 322 NPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVK 400 (635)
T ss_pred CccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEE
Confidence 56779999999966666668999999999875420 1111111 122235788999874444455999999
Q ss_pred EEcCC
Q 037120 283 WDLRG 287 (489)
Q Consensus 283 wd~~~ 287 (489)
||+.+
T Consensus 401 wn~~~ 405 (635)
T PRK02888 401 WNIEA 405 (635)
T ss_pred EehHH
Confidence 99876
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0053 Score=60.73 Aligned_cols=120 Identities=12% Similarity=0.076 Sum_probs=81.3
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
|.=-+++..+++++.|+.-|.+.+|+-..+...... . .+-.. .+.....+++. ++++.|+..
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~-------~------~~~~~---~~~~~~vs~~e-~lvAagt~~- 97 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLK-------N------EGATG---ITCVRSVSSVE-YLVAAGTAS- 97 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhccc-------c------cCccc---eEEEEEecchh-HhhhhhcCC-
Confidence 444456778899999999999999988774333211 0 00011 14445566664 577777766
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRV 243 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 243 (489)
|.|.++-+......+...+.+.. ..|...|++++|++++. .+++|...|.|.+--+.+
T Consensus 98 g~V~v~ql~~~~p~~~~~~t~~d------~~~~~rVTal~Ws~~~~-k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 98 GRVSVFQLNKELPRDLDYVTPCD------KSHKCRVTALEWSKNGM-KLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ceEEeehhhccCCCcceeecccc------ccCCceEEEEEeccccc-EEeecCCCceEEEEEech
Confidence 99999998653222212222222 34889999999999999 999999999998877665
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.073 Score=52.17 Aligned_cols=140 Identities=13% Similarity=0.147 Sum_probs=75.7
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
....+.++|+|+++++ +.||.-.|+.....+... .+. -..++|.+.+ .++.-...
T Consensus 34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~-------------------~G~---g~~~vw~~~n--~yAv~~~~ 88 (443)
T PF04053_consen 34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKA-------------------FGS---GLSFVWSSRN--RYAVLESS 88 (443)
T ss_dssp --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEE-------------------EEE----SEEEE-TSS--EEEEE-TT
T ss_pred CCeeEEECCCCCEEEE-EcCCEEEEEEccCCcccc-------------------cCc---eeEEEEecCc--cEEEEECC
Confidence 3678999999999988 557888888744311111 111 3448899854 56666555
Q ss_pred CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCC
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHG 257 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~ 257 (489)
++|.|+.--.. .....+.. . ..+..|-. |. +|+..+ ++.|.+||+.+++ .+..+. -.
T Consensus 89 -~~I~I~kn~~~--~~~k~i~~--------~---~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~--~i~~i~--v~ 145 (443)
T PF04053_consen 89 -STIKIYKNFKN--EVVKSIKL--------P---FSVEKIFG---GN-LLGVKS-SDFICFYDWETGK--LIRRID--VS 145 (443)
T ss_dssp -S-EEEEETTEE---TT-------------S---S-EEEEE----SS-SEEEEE-TTEEEEE-TTT----EEEEES--S-
T ss_pred -CeEEEEEcCcc--ccceEEcC--------C---cccceEEc---Cc-EEEEEC-CCCEEEEEhhHcc--eeeEEe--cC
Confidence 89999733111 11011111 1 12334422 66 666555 4489999999876 565554 23
Q ss_pred ceeEEEEeecCCEEEEEeCCCeEEEEEcC
Q 037120 258 TLNSIQLHAENQIIFAAGKHGSIYLWDLR 286 (489)
Q Consensus 258 ~v~~~~~~p~~~~l~~~~~dg~i~lwd~~ 286 (489)
.|..+.|++++.+++..+.+ .+.+++..
T Consensus 146 ~vk~V~Ws~~g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 146 AVKYVIWSDDGELVALVTKD-SIYILKYN 173 (443)
T ss_dssp E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred CCcEEEEECCCCEEEEEeCC-eEEEEEec
Confidence 48999999999998888765 67777654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0013 Score=39.13 Aligned_cols=32 Identities=22% Similarity=0.494 Sum_probs=29.0
Q ss_pred CCcccCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 037120 208 SDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWD 240 (489)
Q Consensus 208 ~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd 240 (489)
..|...|.++.|++.+. .+++++.|+.+++||
T Consensus 9 ~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~ 40 (40)
T smart00320 9 KGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD 40 (40)
T ss_pred EecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence 56778999999999887 999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.047 Score=52.71 Aligned_cols=182 Identities=10% Similarity=0.065 Sum_probs=92.3
Q ss_pred CCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeC---CC----C
Q 037120 96 KPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNL---AN----Q 168 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~---~~----~ 168 (489)
...|++++.|.-| ++|.|..+|.+.|.|+.....+... ....+ .........|+++.|.- .+ .
T Consensus 86 ~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~------~i~~~---~~~~~~~~~vt~ieF~vm~~~~D~ySS 155 (395)
T PF08596_consen 86 QGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNE------NIRES---FLSKSSSSYVTSIEFSVMTLGGDGYSS 155 (395)
T ss_dssp S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEE------EGGG-----T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred CCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeec------ccccc---ccccccccCeeEEEEEEEecCCCcccc
Confidence 4559999998777 8999999999999999775444321 01110 01111112288888862 11 2
Q ss_pred CEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEe-cCC--------------------CcEE
Q 037120 169 DEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFS-AVN--------------------TSRL 227 (489)
Q Consensus 169 ~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~--------------------~~~l 227 (489)
-++++|... |.+.+|.+.-.... ......... ...+.+.|..|... .+. +.++
T Consensus 156 i~L~vGTn~-G~v~~fkIlp~~~g-~f~v~~~~~----~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~v 229 (395)
T PF08596_consen 156 ICLLVGTNS-GNVLTFKILPSSNG-RFSVQFAGA----TTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYV 229 (395)
T ss_dssp EEEEEEETT-SEEEEEEEEE-GGG--EEEEEEEE----E--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEE
T ss_pred eEEEEEeCC-CCEEEEEEecCCCC-ceEEEEeec----cccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEE
Confidence 356667766 99999998421111 111111111 12355666666532 211 1244
Q ss_pred EEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEe-----ecCCEEEEEeCCCeEEEEEcCCCcccceeec
Q 037120 228 IASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLH-----AENQIIFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 228 ~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~-----p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
+.++ +..++++..-+.+.. .+.+ ...-....+.+- ..+..|++-..+|.|++|.+...+.+..+..
T Consensus 230 VvvS-e~~irv~~~~~~k~~-~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l 300 (395)
T PF08596_consen 230 VVVS-ESDIRVFKPPKSKGA-HKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSL 300 (395)
T ss_dssp EEE--SSEEEEE-TT---EE-EEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-
T ss_pred EEEc-ccceEEEeCCCCccc-ceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccC
Confidence 4444 788999988775522 2222 111223334442 3455666667899999999998877666554
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.071 Score=40.50 Aligned_cols=101 Identities=13% Similarity=0.198 Sum_probs=65.3
Q ss_pred eeEEEe---eCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCC
Q 037120 158 LDAVRW---NLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG 234 (489)
Q Consensus 158 V~~v~~---~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg 234 (489)
|+++++ ..++...|+.|+.| ..|++|+-. ..+.... -+..|+++.-... . .|+.+-.+|
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D-~~IRvf~~~-------e~~~Ei~--------e~~~v~~L~~~~~-~-~F~Y~l~NG 63 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDD-FEIRVFKGD-------EIVAEIT--------ETDKVTSLCSLGG-G-RFAYALANG 63 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCC-cEEEEEeCC-------cEEEEEe--------cccceEEEEEcCC-C-EEEEEecCC
Confidence 445554 55677889999988 999999862 2222222 2347777776654 3 799999999
Q ss_pred cEEEEECCCCCcCceeeccCCCCceeEEEEeecC----CEEEEEeCCCeEE
Q 037120 235 VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAEN----QIIFAAGKHGSIY 281 (489)
Q Consensus 235 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~----~~l~~~~~dg~i~ 281 (489)
+|-+|+-... .++... +..+.++++..-+ +-|++|-.+|.|-
T Consensus 64 TVGvY~~~~R---lWRiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 64 TVGVYDRSQR---LWRIKS--KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEEeCcce---eeeecc--CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 9999986543 343433 3346666654322 2577777788764
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.32 Score=46.00 Aligned_cols=172 Identities=12% Similarity=0.090 Sum_probs=73.1
Q ss_pred cEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCC-----eEEEEEcCC-CcccceeecCCccCCCCeeEE
Q 037120 235 VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHG-----SIYLWDLRG-GRTSAPFHNHKEVCHLPLTSL 308 (489)
Q Consensus 235 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg-----~i~lwd~~~-~~~~~~~~~~~~~~~~~v~~l 308 (489)
.|.-.|+.+++...+ ..-...+.-+.|+|....++.=|..| .-|||-+++ +.....+..+... ..+..=
T Consensus 169 ~i~~idl~tG~~~~v---~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~--e~~gHE 243 (386)
T PF14583_consen 169 RIFTIDLKTGERKVV---FEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEG--ESVGHE 243 (386)
T ss_dssp EEEEEETTT--EEEE---EEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TT--EEEEEE
T ss_pred eEEEEECCCCceeEE---EecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCC--cccccc
Confidence 455667877763322 22346678899999888777765533 237776665 2223333322211 125566
Q ss_pred EeCCCCcceee--------------c--ccc---ceeeccceeEEEeCCCCCeEEEEEecCC---------------ceE
Q 037120 309 KLASMLEKIGT--------------L--KAQ---SKIVSQEIHSIDLDPSCSYQLAFHLDDG---------------WSG 354 (489)
Q Consensus 309 ~~~~~~~~i~~--------------~--~~~---~~~~~~~i~~~~~~p~~~~~~~~~~~~~---------------w~~ 354 (489)
-|.|||..+.- . .+. ..........+..++++..++.=+.+.. |..
T Consensus 244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~ 323 (386)
T PF14583_consen 244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIY 323 (386)
T ss_dssp EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEEE-SEEEEEE-TTSSEEEEEE-------------------EEE
T ss_pred cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEE
Confidence 78888877621 0 000 0011123344556677776654443321 222
Q ss_pred EEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEec
Q 037120 355 VLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDF 413 (489)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~ 413 (489)
+++...+....+......|.... .-.+.....++|+|++..+|.+....|...||=+
T Consensus 324 ~~~~~~~~~~~l~~h~~sw~v~~--~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 324 LFDVEAGRFRKLARHDTSWKVLD--GDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEETTTTEEEEEEE-------BT--TBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred EeccccCceeeeeeccCcceeec--CCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 23332322222211111232110 0011234679999999999999888886666543
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.22 Score=44.61 Aligned_cols=116 Identities=9% Similarity=0.152 Sum_probs=68.8
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
+..++|+|+...+++..... +.|..++.. ..++.... +.+ ....-.|++..++. ++++.-.++.+.
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~-~~i~els~~------G~vlr~i~-----l~g-~~D~EgI~y~g~~~-~vl~~Er~~~L~ 89 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEP-GEIYELSLD------GKVLRRIP-----LDG-FGDYEGITYLGNGR-YVLSEERDQRLY 89 (248)
T ss_dssp EEEEEEETTTTEEEEEETTT-TEEEEEETT--------EEEEEE------SS--SSEEEEEE-STTE-EEEEETTTTEEE
T ss_pred ccccEEcCCCCeEEEEECCC-CEEEEEcCC------CCEEEEEe-----CCC-CCCceeEEEECCCE-EEEEEcCCCcEE
Confidence 88899999876566666655 888777761 23443322 133 34678888876665 555555689999
Q ss_pred EEECCCCCcC----ceeec-----cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 037120 238 IWDRRVGVLP----SLELS-----TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 238 iwd~~~~~~~----~~~~~-----~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~ 287 (489)
++++...... ..+.+ ..++..+-.++|+|.++.++++-...-..||.++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~ 148 (248)
T PF06977_consen 90 IFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNG 148 (248)
T ss_dssp EEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEES
T ss_pred EEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcc
Confidence 9988443211 11111 13556789999999988888886655556666553
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0044 Score=60.48 Aligned_cols=93 Identities=11% Similarity=0.092 Sum_probs=69.4
Q ss_pred CeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCcee-EEEEeecCCEEEEEeCCCeEEEEEcCCCccc
Q 037120 213 GLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLN-SIQLHAENQIIFAAGKHGSIYLWDLRGGRTS 291 (489)
Q Consensus 213 ~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~ 291 (489)
.|.-+.|+|.-. ++|.+..+|.|.+.-+.-.+ .+ .+.-|...++ +++|.|||+.+++|-.||+|++-|+.++..+
T Consensus 22 ~i~~~ewnP~~d-LiA~~t~~gelli~R~n~qR--lw-tip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 22 NIKRIEWNPKMD-LIATRTEKGELLIHRLNWQR--LW-TIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ceEEEEEcCccc-hhheeccCCcEEEEEeccce--eE-eccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 677789999988 99999999988887766322 33 2333444555 9999999999999999999999999998876
Q ss_pred ceeecCCccCCCCeeEEEeCC
Q 037120 292 APFHNHKEVCHLPLTSLKLAS 312 (489)
Q Consensus 292 ~~~~~~~~~~~~~v~~l~~~~ 312 (489)
..+.... ..+|.++-|.+
T Consensus 98 ~~~~~s~---e~~is~~~w~~ 115 (665)
T KOG4640|consen 98 VSFLFSV---ETDISKGIWDR 115 (665)
T ss_pred ecccccc---ccchheeeccc
Confidence 6532111 12377777764
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.28 Score=43.07 Aligned_cols=117 Identities=12% Similarity=0.018 Sum_probs=75.6
Q ss_pred EEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 037120 161 VRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWD 240 (489)
Q Consensus 161 v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd 240 (489)
+..-++.+.+++.|+.. +.+.--|...++-. .... +. ..|.+-+.- -|+ +++.|...|.+++.+
T Consensus 16 LVV~~dskT~v~igSHs-~~~~avd~~sG~~~----We~i------lg---~RiE~sa~v-vgd-fVV~GCy~g~lYfl~ 79 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHS-GIVIAVDPQSGNLI----WEAI------LG---VRIECSAIV-VGD-FVVLGCYSGGLYFLC 79 (354)
T ss_pred EEEecCCceEEEEecCC-ceEEEecCCCCcEE----eehh------hC---ceeeeeeEE-ECC-EEEEEEccCcEEEEE
Confidence 44455556688888877 77777777333211 0000 01 123322222 355 789999999999999
Q ss_pred CCCCCcCceeeccCCCCcee-EEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeec
Q 037120 241 RRVGVLPSLELSTGSHGTLN-SIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 241 ~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
.+++++. .+... .+.|. .....+++..+..|+.|++.+..|.++..++...+.
T Consensus 80 ~~tGs~~-w~f~~--~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 80 VKTGSQI-WNFVI--LETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred ecchhhe-eeeee--hhhhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 9998632 22221 22232 345678999999999999999999999887777654
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.38 Score=44.27 Aligned_cols=159 Identities=17% Similarity=0.159 Sum_probs=85.9
Q ss_pred CCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEE
Q 037120 105 DCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIY 184 (489)
Q Consensus 105 s~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vw 184 (489)
...++.|+.|+.+| +.+++........ . ..+... |..+...|.-. +++.-+ |+.+.++
T Consensus 4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~---------~------i~~~~~---I~ql~vl~~~~-~llvLs--d~~l~~~ 61 (275)
T PF00780_consen 4 DSWGDRLLVGTEDG-LYVYDLSDPSKPT---------R------ILKLSS---ITQLSVLPELN-LLLVLS--DGQLYVY 61 (275)
T ss_pred ccCCCEEEEEECCC-EEEEEecCCccce---------e------Eeecce---EEEEEEecccC-EEEEEc--CCccEEE
Confidence 34678999999999 8999883211000 0 112222 77888888754 566666 5999999
Q ss_pred EeccCCCCCcee--eeeceeeeeecCCcccCeeEEE--EecCCCcEEEEEeCCCcEEEEECCCC--Cc-CceeeccCCCC
Q 037120 185 DIGYISDEPVEV--LKTRRSVTVVGSDVQKGLSDLA--FSAVNTSRLIASDTHGVVNIWDRRVG--VL-PSLELSTGSHG 257 (489)
Q Consensus 185 d~~~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~~l~s~s~dg~i~iwd~~~~--~~-~~~~~~~~h~~ 257 (489)
++.......... .................+...+ -...+. ..+.......|.+|..... +. ...+.+ .-..
T Consensus 62 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~-~~L~va~kk~i~i~~~~~~~~~f~~~~ke~-~lp~ 139 (275)
T PF00780_consen 62 DLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGS-RRLCVAVKKKILIYEWNDPRNSFSKLLKEI-SLPD 139 (275)
T ss_pred EchhhccccccccccccccccccccccccCCeeEEeeccccccc-eEEEEEECCEEEEEEEECCcccccceeEEE-EcCC
Confidence 996432221000 0000000000011223344443 112333 4444554668988887763 21 122222 2347
Q ss_pred ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc
Q 037120 258 TLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT 290 (489)
Q Consensus 258 ~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~ 290 (489)
.+.+++|. ++.++.|..+ ...+.|+.++..
T Consensus 140 ~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~ 169 (275)
T PF00780_consen 140 PPSSIAFL--GNKICVGTSK-GFYLIDLNTGSP 169 (275)
T ss_pred CcEEEEEe--CCEEEEEeCC-ceEEEecCCCCc
Confidence 78899998 5666666544 478899997654
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.55 Score=45.92 Aligned_cols=92 Identities=12% Similarity=0.092 Sum_probs=60.2
Q ss_pred EEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecC
Q 037120 218 AFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNH 297 (489)
Q Consensus 218 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~ 297 (489)
.+..+.. ..+....++.+.+.+-...+ . . ...+++..+++||++++++.-..+|.+.+....-.+.+..+...
T Consensus 185 ~l~~~~~-~~i~~~~g~~i~~i~~~~~~--~---i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~ 257 (410)
T PF04841_consen 185 LLSSDRV-VEILLANGETIYIIDENSFK--Q---I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTD 257 (410)
T ss_pred EeecCcc-eEEEEecCCEEEEEEccccc--c---c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecC
Confidence 3444555 55555556677755543321 1 1 12468999999999999988888999999887655555555543
Q ss_pred CccCCCCeeEEEeCCCCcceee
Q 037120 298 KEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 298 ~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
.. .+...+.|+.+...+..
T Consensus 258 ~~---~~p~~~~WCG~dav~l~ 276 (410)
T PF04841_consen 258 SK---SPPKQMAWCGNDAVVLS 276 (410)
T ss_pred cC---CCCcEEEEECCCcEEEE
Confidence 11 23678999988765544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.34 Score=44.97 Aligned_cols=160 Identities=11% Similarity=0.099 Sum_probs=76.5
Q ss_pred EEEECCCCcEEEEEe----------cCCeEEEEeCCCcccccCCCCCCCCCccccc-ccccCCCCCCceeEEEeeCCCCC
Q 037120 101 ALDFDCKGIYLVSAT----------RSGCLTVHDFESLYYQCNGTLPGVGLKEDQS-KHLLHIPLPQQLDAVRWNLANQD 169 (489)
Q Consensus 101 ~~~fs~~g~~la~g~----------~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~-~~~~h~~~~~~V~~v~~~~~~~~ 169 (489)
.+..+|+|+.+.+++ .+-.|.+||..+....... ..+.. ... .... ...++++.+++.
T Consensus 40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI-------~iP~k~R~~-~~~~---~~~~~ls~dgk~ 108 (342)
T PF06433_consen 40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEI-------EIPPKPRAQ-VVPY---KNMFALSADGKF 108 (342)
T ss_dssp EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEE-------EETTS-B---BS-----GGGEEE-TTSSE
T ss_pred ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceE-------ecCCcchhe-eccc---ccceEEccCCcE
Confidence 356789999888754 3457999999996544421 01100 000 0001 122455666554
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
+++.--.=-.+|.|-|+ ...+.+..... . . |....|.++.-|.+-+.||.+.-..+....++..
T Consensus 109 ~~V~N~TPa~SVtVVDl-----~~~kvv~ei~~-----P----G--C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~ 172 (342)
T PF06433_consen 109 LYVQNFTPATSVTVVDL-----AAKKVVGEIDT-----P----G--CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQ 172 (342)
T ss_dssp EEEEEESSSEEEEEEET-----TTTEEEEEEEG-----T----S--EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEE
T ss_pred EEEEccCCCCeEEEEEC-----CCCceeeeecC-----C----C--EEEEEecCCCceEEEecCCceEEEEECCCCCEeE
Confidence 44432221245666666 22233332221 1 2 2223455554788888899999988885433211
Q ss_pred e---eccCCCCce-eEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 037120 250 E---LSTGSHGTL-NSIQLHAENQIIFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 250 ~---~~~~h~~~v-~~~~~~p~~~~l~~~~~dg~i~lwd~~~ 287 (489)
+ .+..-..++ ..-++...+..++-.+.+|.|+--|+..
T Consensus 173 ~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg 214 (342)
T PF06433_consen 173 KSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSG 214 (342)
T ss_dssp EEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETT
T ss_pred eeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccC
Confidence 1 111111222 2333333444444456677777666654
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.02 Score=57.17 Aligned_cols=116 Identities=15% Similarity=0.115 Sum_probs=68.3
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
...++++||++++++++..+ ++|.|.|+......-...+.+......+..- ...-...+|.++|. .+.|-.-|..|.
T Consensus 323 PHGV~vSPDGkylyVanklS-~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~-aytslf~dsqv~ 399 (635)
T PRK02888 323 PHGVNTSPDGKYFIANGKLS-PTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGN-AYTTLFLDSQIV 399 (635)
T ss_pred ccceEECCCCCEEEEeCCCC-CcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCC-EEEeEeecceeE
Confidence 33499999999888887777 9999999965322100111111111111110 11234568888887 888888999999
Q ss_pred EEECCC------CCc--Cceeecc-----CCCCceeEEEEeecCCEEEEEeC
Q 037120 238 IWDRRV------GVL--PSLELST-----GSHGTLNSIQLHAENQIIFAAGK 276 (489)
Q Consensus 238 iwd~~~------~~~--~~~~~~~-----~h~~~v~~~~~~p~~~~l~~~~~ 276 (489)
.||+.. ++. +.+..+. +|......=.-.|+|++|++...
T Consensus 400 kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 400 KWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred EEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 999876 111 1332222 44332222334678888888754
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.076 Score=40.35 Aligned_cols=97 Identities=18% Similarity=0.235 Sum_probs=58.3
Q ss_pred EECCCC-cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEE
Q 037120 103 DFDCKG-IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVV 181 (489)
Q Consensus 103 ~fs~~g-~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i 181 (489)
.|+-+| +.|++||.|..|+||+-+.......+ ...|++++-... ..++.+..+ |+|
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e--------------------~~~v~~L~~~~~--~~F~Y~l~N-GTV 65 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGDEIVAEITE--------------------TDKVTSLCSLGG--GRFAYALAN-GTV 65 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCCcEEEEEec--------------------ccceEEEEEcCC--CEEEEEecC-CEE
Confidence 344444 67999999999999987762221111 111777776665 367777777 999
Q ss_pred EEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEec---CCCcEEEEEeCCCcEE
Q 037120 182 SIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSA---VNTSRLIASDTHGVVN 237 (489)
Q Consensus 182 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~---~~~~~l~s~s~dg~i~ 237 (489)
-+|+-.. ....... ...+.++++.. +|...|++|-.+|.|-
T Consensus 66 GvY~~~~------RlWRiKS---------K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 66 GVYDRSQ------RLWRIKS---------KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEeCcc------eeeeecc---------CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 9998721 2221111 12355555443 3444688887788764
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.085 Score=54.86 Aligned_cols=86 Identities=13% Similarity=0.152 Sum_probs=58.8
Q ss_pred EEEEEeCCCcEEEEECCCCCcCceeec---cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-cceeecCCccC
Q 037120 226 RLIASDTHGVVNIWDRRVGVLPSLELS---TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-SAPFHNHKEVC 301 (489)
Q Consensus 226 ~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~ 301 (489)
..+.|-.++.+..||.|.....++... .......+|++-..+| +|++|+.+|.|||||- .|+. ...|++..
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG--- 618 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLG--- 618 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCC---
Confidence 345566789999999997543233111 1234567788888777 4689999999999994 4433 34444444
Q ss_pred CCCeeEEEeCCCCcce
Q 037120 302 HLPLTSLKLASMLEKI 317 (489)
Q Consensus 302 ~~~v~~l~~~~~~~~i 317 (489)
.||..|..+.||+.+
T Consensus 619 -~pI~~iDvt~DGkwi 633 (794)
T PF08553_consen 619 -DPIIGIDVTADGKWI 633 (794)
T ss_pred -CCeeEEEecCCCcEE
Confidence 349999999999876
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.051 Score=57.08 Aligned_cols=159 Identities=7% Similarity=-0.002 Sum_probs=97.2
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
|..+..++|.....+..+.++-.|..||++...........+.. ...+.........++.|+|.-....+.+..|+.|+
T Consensus 103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~-~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLK-NSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccc-cccchhccccccccccccCCccchhhhhccccchh
Confidence 44555667765555555544358999999754332211111111 11111223345667889998876778888999999
Q ss_pred EEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 238 IWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
+.-+......+-. ..-....+|++|+|.|..+++|-..|++.-|... ++....+.+.....+..|.+|.|-.....+
T Consensus 182 V~~~~~~~~~v~s--~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTS--FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhcc--cCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEE
Confidence 9877654322221 1335678999999999999999999999988754 333333332111112448999998877766
Q ss_pred eec
Q 037120 318 GTL 320 (489)
Q Consensus 318 ~~~ 320 (489)
+.+
T Consensus 259 vvy 261 (1405)
T KOG3630|consen 259 VVY 261 (1405)
T ss_pred EEe
Confidence 543
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.85 Score=44.54 Aligned_cols=151 Identities=11% Similarity=0.033 Sum_probs=75.7
Q ss_pred CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEec
Q 037120 108 GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIG 187 (489)
Q Consensus 108 g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~ 187 (489)
+..+..++.+|.+..+|.++++..=.. . ..+.. ..+.... + ..++.+..+ +.|.-+|..
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W~~--------~----~~~~~-----~ssP~v~-~--~~v~v~~~~-g~l~ald~~ 178 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAWQT--------K----VAGEA-----LSRPVVS-D--GLVLVHTSN-GMLQALNES 178 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcccc--------c----CCCce-----ecCCEEE-C--CEEEEECCC-CEEEEEEcc
Confidence 456777888999999999885543321 0 00000 0001111 2 244445555 889988885
Q ss_pred cCCCCCceeeeece-eeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC---C---cee
Q 037120 188 YISDEPVEVLKTRR-SVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH---G---TLN 260 (489)
Q Consensus 188 ~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~---~---~v~ 260 (489)
.+.. ...... .......+...++ . .+. .++.++.+|.+..+|..+++.. .+...... . ...
T Consensus 179 tG~~----~W~~~~~~~~~~~~~~~sP~----v--~~~-~v~~~~~~g~v~a~d~~~G~~~-W~~~~~~~~~~~~~~~~~ 246 (394)
T PRK11138 179 DGAV----KWTVNLDVPSLTLRGESAPA----T--AFG-GAIVGGDNGRVSAVLMEQGQLI-WQQRISQPTGATEIDRLV 246 (394)
T ss_pred CCCE----eeeecCCCCcccccCCCCCE----E--ECC-EEEEEcCCCEEEEEEccCChhh-heeccccCCCccchhccc
Confidence 4421 111000 0000000111111 1 123 4666777899999999887632 11110000 0 001
Q ss_pred EEEEee--cCCEEEEEeCCCeEEEEEcCCCccc
Q 037120 261 SIQLHA--ENQIIFAAGKHGSIYLWDLRGGRTS 291 (489)
Q Consensus 261 ~~~~~p--~~~~l~~~~~dg~i~lwd~~~~~~~ 291 (489)
.+.-+| .+..+++++.+|.+..+|..+|+.+
T Consensus 247 ~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~ 279 (394)
T PRK11138 247 DVDTTPVVVGGVVYALAYNGNLVALDLRSGQIV 279 (394)
T ss_pred ccCCCcEEECCEEEEEEcCCeEEEEECCCCCEE
Confidence 111122 3567788888999999999998754
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0083 Score=37.90 Aligned_cols=31 Identities=13% Similarity=0.087 Sum_probs=28.2
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCC
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFES 127 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~ 127 (489)
+.|.+++|+|..++||.|+.+|.|.||.++-
T Consensus 12 ~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~ 42 (47)
T PF12894_consen 12 SRVSCMSWCPTMDLIALGTEDGEVLVYRLNW 42 (47)
T ss_pred CcEEEEEECCCCCEEEEEECCCeEEEEECCC
Confidence 3599999999999999999999999999843
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.3 Score=48.10 Aligned_cols=165 Identities=16% Similarity=0.174 Sum_probs=87.4
Q ss_pred eeEEEECCCCcEEEEE-ecCC----eEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 99 ISALDFDCKGIYLVSA-TRSG----CLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 99 V~~~~fs~~g~~la~g-~~dg----~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
+..+.+||+|++||.+ +..| .|+|+|+++++..... ... .. -..+.|.+++..++.+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-----------i~~----~~---~~~~~W~~d~~~~~y~ 187 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-----------IEN----PK---FSSVSWSDDGKGFFYT 187 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-----------EEE----EE---SEEEEECTTSSEEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-----------ccc----cc---cceEEEeCCCCEEEEE
Confidence 4578899999999866 3344 4999999986444311 000 00 1239999998877777
Q ss_pred EecC---------CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC---CcEEEEEC
Q 037120 174 ASTR---------SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH---GVVNIWDR 241 (489)
Q Consensus 174 ~~~d---------~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d---g~i~iwd~ 241 (489)
...+ ...|..|.+.........++.. ..+......+..+++++.+++..... ..+.+.|+
T Consensus 188 ~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~--------~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~ 259 (414)
T PF02897_consen 188 RFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEE--------PDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDL 259 (414)
T ss_dssp ECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC---------TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEEC
T ss_pred EeCcccccccCCCCcEEEEEECCCChHhCeeEEee--------cCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEec
Confidence 6533 2357888874432221111111 11111256788999999555555533 34788888
Q ss_pred CCC--CcCceeeccCCCCceeEEEEeecCCEEEEEeC---CCeEEEEEcCCCc
Q 037120 242 RVG--VLPSLELSTGSHGTLNSIQLHAENQIIFAAGK---HGSIYLWDLRGGR 289 (489)
Q Consensus 242 ~~~--~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~---dg~i~lwd~~~~~ 289 (489)
..+ .....+.+......+....-+..+.+++.+.. .+.|...++.+..
T Consensus 260 ~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~ 312 (414)
T PF02897_consen 260 DDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPS 312 (414)
T ss_dssp CCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTS
T ss_pred cccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccc
Confidence 874 11122222233333433333334444444422 5666666766654
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.017 Score=56.65 Aligned_cols=91 Identities=10% Similarity=0.168 Sum_probs=64.2
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCee-EEEEecCCCcEEEEEeCCCcE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLS-DLAFSAVNTSRLIASDTHGVV 236 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~s~dg~i 236 (489)
|.-+.|+|.-. ++|.+..+ |.|.+..++. +....+ .-|...++ +++|.|||+ .++.|-.||+|
T Consensus 23 i~~~ewnP~~d-LiA~~t~~-gelli~R~n~---------qRlwti----p~p~~~v~~sL~W~~DGk-llaVg~kdG~I 86 (665)
T KOG4640|consen 23 IKRIEWNPKMD-LIATRTEK-GELLIHRLNW---------QRLWTI----PIPGENVTASLCWRPDGK-LLAVGFKDGTI 86 (665)
T ss_pred eEEEEEcCccc-hhheeccC-CcEEEEEecc---------ceeEec----cCCCCccceeeeecCCCC-EEEEEecCCeE
Confidence 77799999875 88888888 8888877731 111111 22344555 999999999 99999999999
Q ss_pred EEEECCCCCcCceeeccCCCCceeEEEEe
Q 037120 237 NIWDRRVGVLPSLELSTGSHGTLNSIQLH 265 (489)
Q Consensus 237 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~~ 265 (489)
++.|+.++... ......-...|.++-|.
T Consensus 87 ~L~Dve~~~~l-~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 87 RLHDVEKGGRL-VSFLFSVETDISKGIWD 114 (665)
T ss_pred EEEEccCCCce-eccccccccchheeecc
Confidence 99999987622 11112335667777776
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.13 Score=50.58 Aligned_cols=124 Identities=11% Similarity=0.147 Sum_probs=73.9
Q ss_pred eeEEEeeCC----CCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC
Q 037120 158 LDAVRWNLA----NQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH 233 (489)
Q Consensus 158 V~~v~~~~~----~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d 233 (489)
|..+.|.|- ...+|+.-- ...|.||.+.....+..+.+.... +... ..-.---..+.|+|... .|+.-...
T Consensus 59 V~GlsW~P~~~~~~paLLAVQH--kkhVtVWqL~~s~~e~~K~l~sQt-cEi~-e~~pvLpQGCVWHPk~~-iL~VLT~~ 133 (671)
T PF15390_consen 59 VHGLSWAPPCTADTPALLAVQH--KKHVTVWQLCPSTTERNKLLMSQT-CEIR-EPFPVLPQGCVWHPKKA-ILTVLTAR 133 (671)
T ss_pred eeeeeecCcccCCCCceEEEec--cceEEEEEeccCccccccceeeee-eecc-CCcccCCCcccccCCCc-eEEEEecC
Confidence 788999886 334565555 379999999644333323222111 1000 00001123578999988 65555544
Q ss_pred CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEE-eCCCeEEEEEcCC
Q 037120 234 GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAA-GKHGSIYLWDLRG 287 (489)
Q Consensus 234 g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~-~~dg~i~lwd~~~ 287 (489)
..=.+++++....++.-.+ ...+-|.|.+|.+||+.|+++ |+.=.-++||-..
T Consensus 134 dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 134 DVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred ceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 3434677776554432222 446889999999999987776 5455678998643
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.12 Score=50.01 Aligned_cols=155 Identities=12% Similarity=0.111 Sum_probs=82.3
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCccccc-CCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQC-NGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~-~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
.|..+.|.++..-||+|...|.|.||.+...+... .+ ..+..+ ..+.+. ...
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~-------~~~~~~-------------~~~~~~------~~~- 55 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNRE-------QPPDLD-------------YNFRRF------SLN- 55 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------------------------S--------GG-
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccC-------CCcccC-------------cccccc------ccc-
Confidence 48899999998899999999999999987632221 00 000000 111110 000
Q ss_pred CCCEEEEEEeccCCCCC-ceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc--
Q 037120 177 RSNVVSIYDIGYISDEP-VEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST-- 253 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-- 253 (489)
++.-.+-|+....... .+-+.+...+ ....+.|++++.+.-| +++.|..+|.+.|.|+|.+.......+.
T Consensus 56 -~~~~~l~di~~r~~~~~~~gf~P~~l~----~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~ 128 (395)
T PF08596_consen 56 -NSPGKLTDISDRAPPSLKEGFLPLTLL----DAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRES 128 (395)
T ss_dssp -GSS-SEEE-GGG--TT-SEEEEEEEEE-------S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG-
T ss_pred -CCCcceEEehhhCCcccccccCchhhe----eccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeecccccc
Confidence 0122333443221111 1223333322 3346799999987444 8999999999999999876422111111
Q ss_pred ----CCCCceeEEEEee-----c---CCEEEEEeCCCeEEEEEcC
Q 037120 254 ----GSHGTLNSIQLHA-----E---NQIIFAAGKHGSIYLWDLR 286 (489)
Q Consensus 254 ----~h~~~v~~~~~~p-----~---~~~l~~~~~dg~i~lwd~~ 286 (489)
.....|+++.|.- | .-.+++|...|.+.+|.+-
T Consensus 129 ~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 129 FLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKIL 173 (395)
T ss_dssp -T-SS----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEE
T ss_pred ccccccccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEe
Confidence 2345688888873 2 2468888889999999875
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.79 Score=44.43 Aligned_cols=182 Identities=11% Similarity=0.051 Sum_probs=110.8
Q ss_pred eeEEEECCCCcE-EEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec-
Q 037120 99 ISALDFDCKGIY-LVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST- 176 (489)
Q Consensus 99 V~~~~fs~~g~~-la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~- 176 (489)
-..+++++.+.. .++...+..|.+.|..+...... ...+. . -..++++++++.+.++-..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~-------------~~vG~--~---P~~~~~~~~~~~vYV~n~~~ 137 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS-------------IPVGL--G---PVGLAVDPDGKYVYVANAGN 137 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE-------------eeecc--C---CceEEECCCCCEEEEEeccc
Confidence 456788888874 45555568999999666333221 11111 2 3459999999877776662
Q ss_pred -CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee-e---
Q 037120 177 -RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE-L--- 251 (489)
Q Consensus 177 -d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~--- 251 (489)
+ +++.+.|-... ..+.... .+- .+ ..+++.|+++..+++-..++.|.+.|..... ..+ .
T Consensus 138 ~~-~~vsvid~~t~-----~~~~~~~------vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~--v~~~~~~~ 201 (381)
T COG3391 138 GN-NTVSVIDAATN-----KVTATIP------VGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS--VVRGSVGS 201 (381)
T ss_pred CC-ceEEEEeCCCC-----eEEEEEe------cCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcc--eecccccc
Confidence 4 78888887322 2222211 221 13 7899999999444444588999999977643 221 0
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeC-C--CeEEEEEcCCCcccce-eecCCccCCCCeeEEEeCCCCccee
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGK-H--GSIYLWDLRGGRTSAP-FHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~-d--g~i~lwd~~~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
...-...-..+.++|+|.++++.-. + +.+...|..++..... +...... ...+.++|+|..+.
T Consensus 202 ~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~----~~~v~~~p~g~~~y 268 (381)
T COG3391 202 LVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGA----PRGVAVDPAGKAAY 268 (381)
T ss_pred ccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCC----CCceeECCCCCEEE
Confidence 0111233457899999998887755 3 6999999988765333 1111102 34566677776553
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.13 Score=53.59 Aligned_cols=102 Identities=16% Similarity=0.203 Sum_probs=68.7
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeee-eceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCc
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLK-TRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPS 248 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 248 (489)
.+++-+ ++.+..||.|.... .++. .... ........+++-..+| +||.|+.+|.||+|| +.+.. .
T Consensus 545 tflGls--~n~lfriDpR~~~~---k~v~~~~k~-----Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd-~~g~~-A 610 (794)
T PF08553_consen 545 TFLGLS--DNSLFRIDPRLSGN---KLVDSQSKQ-----YSSKNNFSCFATTEDG--YIAVGSNKGDIRLYD-RLGKR-A 610 (794)
T ss_pred eEEEEC--CCceEEeccCCCCC---ceeeccccc-----cccCCCceEEEecCCc--eEEEEeCCCcEEeec-ccchh-h
Confidence 455555 48999999975431 1211 1111 1133456777766655 699999999999999 34432 2
Q ss_pred eeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcC
Q 037120 249 LELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLR 286 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~ 286 (489)
...+.+-..+|..|..+.||+++++++ +..|-|+|..
T Consensus 611 KT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 611 KTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred hhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 333446678999999999999988776 5688888864
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.024 Score=35.85 Aligned_cols=34 Identities=9% Similarity=0.227 Sum_probs=29.8
Q ss_pred CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc
Q 037120 256 HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT 290 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~ 290 (489)
...|.+++|+|..++++.+..||.|.+|.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 5543
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.02 E-value=1.6 Score=42.28 Aligned_cols=114 Identities=15% Similarity=0.184 Sum_probs=76.7
Q ss_pred eEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe--CCCcE
Q 037120 159 DAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD--THGVV 236 (489)
Q Consensus 159 ~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s--~dg~i 236 (489)
..++.++.+...++....+ +.|.+.|.... ..+.... .+. .-..+++.++++...++-. .++++
T Consensus 77 ~~i~v~~~~~~vyv~~~~~-~~v~vid~~~~-----~~~~~~~------vG~--~P~~~~~~~~~~~vYV~n~~~~~~~v 142 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDS-NTVSVIDTATN-----TVLGSIP------VGL--GPVGLAVDPDGKYVYVANAGNGNNTV 142 (381)
T ss_pred cceeeCCCCCeEEEecCCC-CeEEEEcCccc-----ceeeEee------ecc--CCceEEECCCCCEEEEEecccCCceE
Confidence 3478888887677777655 89999996222 2222222 111 5567899999984445444 36889
Q ss_pred EEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEe-CCCeEEEEEcCCCc
Q 037120 237 NIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAG-KHGSIYLWDLRGGR 289 (489)
Q Consensus 237 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~-~dg~i~lwd~~~~~ 289 (489)
.+.|..+.+ .......-..+ ..++++|+|..++.+. .++.|.+.|..+..
T Consensus 143 svid~~t~~--~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~ 193 (381)
T COG3391 143 SVIDAATNK--VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS 193 (381)
T ss_pred EEEeCCCCe--EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcc
Confidence 899988765 33332222233 8899999999888776 49999999976543
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.022 Score=48.86 Aligned_cols=104 Identities=6% Similarity=0.058 Sum_probs=55.2
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
.+++|+.+ |.|.+|..+...... -... .+-....+.|.-..++. +.++++.||.|+.|++.-.+ .+
T Consensus 72 ~~~vG~~d-g~v~~~n~n~~g~~~--d~~~--------s~~e~i~~~Ip~~~~~~-~~c~~~~dg~ir~~n~~p~k--~~ 137 (238)
T KOG2444|consen 72 KLMVGTSD-GAVYVFNWNLEGAHS--DRVC--------SGEESIDLGIPNGRDSS-LGCVGAQDGRIRACNIKPNK--VL 137 (238)
T ss_pred eEEeeccc-ceEEEecCCccchHH--Hhhh--------cccccceeccccccccc-eeEEeccCCceeeeccccCc--ee
Confidence 56677777 999999985322110 0000 00111112222222333 88899999999999998766 34
Q ss_pred eeccCCC-CceeEEEEeecCCEEEEE--eCCCeEEEEEcCC
Q 037120 250 ELSTGSH-GTLNSIQLHAENQIIFAA--GKHGSIYLWDLRG 287 (489)
Q Consensus 250 ~~~~~h~-~~v~~~~~~p~~~~l~~~--~~dg~i~lwd~~~ 287 (489)
.....|+ .++..+..+..++++..+ |.|..++.|++..
T Consensus 138 g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 138 GYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 3444555 344444444444444444 4455555555443
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.2 Score=48.40 Aligned_cols=154 Identities=17% Similarity=0.247 Sum_probs=84.9
Q ss_pred ecCCEEEEE-eCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce--eeccccceeeccceeEEEeCCCCCe
Q 037120 266 AENQIIFAA-GKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI--GTLKAQSKIVSQEIHSIDLDPSCSY 342 (489)
Q Consensus 266 p~~~~l~~~-~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i--~~~~~~~~~~~~~i~~~~~~p~~~~ 342 (489)
.+.++++.. +....++-.|+..|+.+..+.-+.. |+-+.+.|+...- .+-.+..-.....|..++..-++..
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-----i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~ 417 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-----INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN 417 (644)
T ss_pred cccceEeeCCCCcCcceeeecccceeeeEeeccCC-----cceeeccCCcchhcccccccEEeecCCceEEecccccCcc
Confidence 344444444 4466788889999999988886543 5666777766432 1100000011112222211111111
Q ss_pred EEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCee
Q 037120 343 QLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSH 422 (489)
Q Consensus 343 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~ 422 (489)
.+ ....++. +... -..-|+..++.-+++.||.+|.||+||-...
T Consensus 418 kl------------~~~q~kq---------y~~k---------~nFsc~aTT~sG~IvvgS~~GdIRLYdri~~------ 461 (644)
T KOG2395|consen 418 KL------------AVVQSKQ---------YSTK---------NNFSCFATTESGYIVVGSLKGDIRLYDRIGR------ 461 (644)
T ss_pred ee------------eeeeccc---------cccc---------cccceeeecCCceEEEeecCCcEEeehhhhh------
Confidence 11 1111111 1111 0123444555778999999999999998433
Q ss_pred eccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 423 VDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
+....++ +...+|..|....+|++|++... ..|.|+..
T Consensus 462 ----~AKTAlP------------gLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 462 ----RAKTALP------------GLGDAIKHVDVTADGKWILATCK-TYLLLIDT 499 (644)
T ss_pred ----hhhhccc------------ccCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence 3333444 78899999999999997765544 55555443
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.64 E-value=3.6 Score=43.40 Aligned_cols=62 Identities=13% Similarity=0.181 Sum_probs=51.3
Q ss_pred cEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEE
Q 037120 396 SIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVV 475 (489)
Q Consensus 396 ~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~ 475 (489)
++++++ -...|++|+.... +.+..-. .|..++.++...-.++.|+.|..-+++.+.
T Consensus 840 gkllA~--In~~vrLye~t~~----------~eLr~e~------------~~~~~~~aL~l~v~gdeI~VgDlm~Sitll 895 (1096)
T KOG1897|consen 840 GKLLAG--INQSVRLYEWTTE----------RELRIEC------------NISNPIIALDLQVKGDEIAVGDLMRSITLL 895 (1096)
T ss_pred CeEEEe--cCcEEEEEEcccc----------ceehhhh------------cccCCeEEEEEEecCcEEEEeeccceEEEE
Confidence 777776 6679999999888 6776656 788899999999999999999999999987
Q ss_pred eccccc
Q 037120 476 SQKQQC 481 (489)
Q Consensus 476 ~~~~~~ 481 (489)
.-|...
T Consensus 896 ~y~~~e 901 (1096)
T KOG1897|consen 896 QYKGDE 901 (1096)
T ss_pred EEeccC
Confidence 665543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.28 Score=48.14 Aligned_cols=125 Identities=10% Similarity=0.087 Sum_probs=69.0
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
...+.++|++..++ .++ +|.-.|+.... +.... .+.-...+|.+.+ .++.-...+.|.
T Consensus 35 p~~ls~npngr~v~-V~g--~geY~iyt~~~--------~r~k~---------~G~g~~~vw~~~n--~yAv~~~~~~I~ 92 (443)
T PF04053_consen 35 PQSLSHNPNGRFVL-VCG--DGEYEIYTALA--------WRNKA---------FGSGLSFVWSSRN--RYAVLESSSTIK 92 (443)
T ss_dssp -SEEEE-TTSSEEE-EEE--TTEEEEEETTT--------TEEEE---------EEE-SEEEE-TSS--EEEEE-TTS-EE
T ss_pred CeeEEECCCCCEEE-EEc--CCEEEEEEccC--------Ccccc---------cCceeEEEEecCc--cEEEEECCCeEE
Confidence 56799999987444 444 48888888411 11111 1244567899844 578788789999
Q ss_pred EE-ECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcc
Q 037120 238 IW-DRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEK 316 (489)
Q Consensus 238 iw-d~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 316 (489)
|+ ++.. + ..+.+.. ...+..+- + |..|+..+.+ .|.+||..+++.+..+.... |..+.|+++|++
T Consensus 93 I~kn~~~-~--~~k~i~~-~~~~~~If--~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~------vk~V~Ws~~g~~ 158 (443)
T PF04053_consen 93 IYKNFKN-E--VVKSIKL-PFSVEKIF--G-GNLLGVKSSD-FICFYDWETGKLIRRIDVSA------VKYVIWSDDGEL 158 (443)
T ss_dssp EEETTEE----TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E-------EEEEE-TTSSE
T ss_pred EEEcCcc-c--cceEEcC-CcccceEE--c-CcEEEEECCC-CEEEEEhhHcceeeEEecCC------CcEEEEECCCCE
Confidence 96 3322 2 1111110 11233332 2 7777776555 89999999999888887532 899999999988
Q ss_pred ee
Q 037120 317 IG 318 (489)
Q Consensus 317 i~ 318 (489)
++
T Consensus 159 va 160 (443)
T PF04053_consen 159 VA 160 (443)
T ss_dssp EE
T ss_pred EE
Confidence 75
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.44 E-value=1.9 Score=38.94 Aligned_cols=174 Identities=13% Similarity=0.141 Sum_probs=100.3
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
..+.+..|+++.|+|+.+.|.+......-.|+=-..+..+..- .+.+ .+. --.+.+..++ .+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti------------PL~g-~~D---pE~Ieyig~n--~f 142 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI------------PLTG-FSD---PETIEYIGGN--QF 142 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe------------cccc-cCC---hhHeEEecCC--EE
Confidence 3344556999999999999988888777666654443333322 1122 111 2237777665 44
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCc-ccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-ce
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDV-QKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-SL 249 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~ 249 (489)
+.+.+.++.+.++.+...... ....... +......+ +.....++|.|.+. .|+.+-+..=+.||.+...... ..
T Consensus 143 vi~dER~~~l~~~~vd~~t~~--~~~~~~~-i~L~~~~k~N~GfEGlA~d~~~~-~l~~aKEr~P~~I~~~~~~~~~l~~ 218 (316)
T COG3204 143 VIVDERDRALYLFTVDADTTV--ISAKVQK-IPLGTTNKKNKGFEGLAWDPVDH-RLFVAKERNPIGIFEVTQSPSSLSV 218 (316)
T ss_pred EEEehhcceEEEEEEcCCccE--EeccceE-EeccccCCCCcCceeeecCCCCc-eEEEEEccCCcEEEEEecCCccccc
Confidence 444444488888888433111 1111111 11111223 66888999999998 7777777777777766543211 11
Q ss_pred eeccCCC-------CceeEEEEeecCCEEEEEeC-CCeEEEEEcCC
Q 037120 250 ELSTGSH-------GTLNSIQLHAENQIIFAAGK-HGSIYLWDLRG 287 (489)
Q Consensus 250 ~~~~~h~-------~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~ 287 (489)
.....+. ..|.++.|++....+++-|. ++.+.-.|...
T Consensus 219 ~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 219 HASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred ccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 1111222 34778899876555555544 77777777654
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.33 E-value=3.2 Score=40.81 Aligned_cols=118 Identities=12% Similarity=0.090 Sum_probs=70.4
Q ss_pred eeEEEeeCCCCCEEEEEecC---CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC-
Q 037120 158 LDAVRWNLANQDEVACASTR---SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH- 233 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d---~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d- 233 (489)
+...+++|++..++++.+.. ...|+++|+..+ ..+...-.. .....+.|.+++..++.+...+
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-----~~l~d~i~~--------~~~~~~~W~~d~~~~~y~~~~~~ 192 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG-----KFLPDGIEN--------PKFSSVSWSDDGKGFFYTRFDED 192 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT-----EEEEEEEEE--------EESEEEEECTTSSEEEEEECSTT
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC-----cCcCCcccc--------cccceEEEeCCCCEEEEEEeCcc
Confidence 55788999998777665544 136999999443 333221100 0122399999988444444322
Q ss_pred ---------CcEEEEECCCCCcCceeeccCCCC-c-eeEEEEeecCCEEEEEeC---C-CeEEEEEcCCC
Q 037120 234 ---------GVVNIWDRRVGVLPSLELSTGSHG-T-LNSIQLHAENQIIFAAGK---H-GSIYLWDLRGG 288 (489)
Q Consensus 234 ---------g~i~iwd~~~~~~~~~~~~~~h~~-~-v~~~~~~p~~~~l~~~~~---d-g~i~lwd~~~~ 288 (489)
..|+.|.+.++...-...+..... . ...+..++++++++.... + ..+++.|+..+
T Consensus 193 ~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 193 QRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp TSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred cccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 247888888765431223332222 2 568889999999887644 4 56888898875
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=95.32 E-value=1 Score=42.68 Aligned_cols=132 Identities=14% Similarity=0.132 Sum_probs=68.0
Q ss_pred eEEEEecCCCcEEEEEeCCC--cEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccc
Q 037120 215 SDLAFSAVNTSRLIASDTHG--VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSA 292 (489)
Q Consensus 215 ~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~ 292 (489)
+.=+|.++|..+|+++..|| .+.+.|+.+++ ..+...+-........++|+++.++-......|+-.|+++.+.-.
T Consensus 39 ~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~~--i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~ 116 (386)
T PF14583_consen 39 YQNCFTDDGRKLLFASDFDGNRNLYLLDLATGE--ITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERV 116 (386)
T ss_dssp TS--B-TTS-EEEEEE-TTSS-EEEEEETTT-E--EEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEE
T ss_pred cCCCcCCCCCEEEEEeccCCCcceEEEEcccCE--EEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEE
Confidence 33468889985666555555 56777888876 443333222223356677988888776666789999999987633
Q ss_pred eeecCCccCCCCeeEEEe--CCCCcceeecc-------------------------------------ccceeeccceeE
Q 037120 293 PFHNHKEVCHLPLTSLKL--ASMLEKIGTLK-------------------------------------AQSKIVSQEIHS 333 (489)
Q Consensus 293 ~~~~~~~~~~~~v~~l~~--~~~~~~i~~~~-------------------------------------~~~~~~~~~i~~ 333 (489)
.+...... +....| +.|+..++.+. ........-+-.
T Consensus 117 vy~~p~~~----~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH 192 (386)
T PF14583_consen 117 VYEVPDDW----KGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGH 192 (386)
T ss_dssp EEE--TTE----EEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEE
T ss_pred EEECCccc----ccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccC
Confidence 33322333 333344 44555552111 000011233567
Q ss_pred EEeCCCCCeEEEEEecCCc
Q 037120 334 IDLDPSCSYQLAFHLDDGW 352 (489)
Q Consensus 334 ~~~~p~~~~~~~~~~~~~w 352 (489)
+.|+|....++++|.++.|
T Consensus 193 ~~fsP~dp~li~fCHEGpw 211 (386)
T PF14583_consen 193 VQFSPTDPTLIMFCHEGPW 211 (386)
T ss_dssp EEEETTEEEEEEEEE-S-T
T ss_pred cccCCCCCCEEEEeccCCc
Confidence 7899999999999998887
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=95.26 E-value=1.3 Score=41.73 Aligned_cols=158 Identities=13% Similarity=0.149 Sum_probs=87.9
Q ss_pred eeEEEECCC----CcEEEEEec----------CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEee
Q 037120 99 ISALDFDCK----GIYLVSATR----------SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWN 164 (489)
Q Consensus 99 V~~~~fs~~----g~~la~g~~----------dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~ 164 (489)
+..+.|..+ -.+|+.|+. .|.|.+|++....... .............+|++++-.
T Consensus 29 ~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~-----------~~l~~i~~~~~~g~V~ai~~~ 97 (321)
T PF03178_consen 29 LCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENN-----------FKLKLIHSTEVKGPVTAICSF 97 (321)
T ss_dssp EEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS----------------EEEEEEEEEESS-EEEEEEE
T ss_pred EEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccc-----------eEEEEEEEEeecCcceEhhhh
Confidence 334455543 578888875 2889999998830000 000000000111228888766
Q ss_pred CCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 037120 165 LANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVG 244 (489)
Q Consensus 165 ~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 244 (489)
. . .++.+. ++.|.+|++.... .+.....+ . ....+.++... ++ +++.|+....+.++..+..
T Consensus 98 ~--~-~lv~~~--g~~l~v~~l~~~~-----~l~~~~~~----~-~~~~i~sl~~~--~~-~I~vgD~~~sv~~~~~~~~ 159 (321)
T PF03178_consen 98 N--G-RLVVAV--GNKLYVYDLDNSK-----TLLKKAFY----D-SPFYITSLSVF--KN-YILVGDAMKSVSLLRYDEE 159 (321)
T ss_dssp T--T-EEEEEE--TTEEEEEEEETTS-----SEEEEEEE------BSSSEEEEEEE--TT-EEEEEESSSSEEEEEEETT
T ss_pred C--C-EEEEee--cCEEEEEEccCcc-----cchhhhee----c-ceEEEEEEecc--cc-EEEEEEcccCEEEEEEEcc
Confidence 2 2 455555 4899999995432 12222211 1 12256666554 55 8889998888887754432
Q ss_pred CcCceeecc--CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcC
Q 037120 245 VLPSLELST--GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLR 286 (489)
Q Consensus 245 ~~~~~~~~~--~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~ 286 (489)
... +.... .....++++.|-++++.++++..+|.|.++...
T Consensus 160 ~~~-l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 160 NNK-LILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp TE--EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred CCE-EEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 211 21111 234568888888777788888889999999876
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=95.25 E-value=2.8 Score=39.60 Aligned_cols=53 Identities=23% Similarity=0.349 Sum_probs=33.3
Q ss_pred CcEEEEECCCC-Cc-Cceee--ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCc
Q 037120 234 GVVNIWDRRVG-VL-PSLEL--STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGR 289 (489)
Q Consensus 234 g~i~iwd~~~~-~~-~~~~~--~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~ 289 (489)
|.|.++++... .. ..++. .....++|++++-- +..++++ ..+.|.+|++...+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv~~-~g~~l~v~~l~~~~ 118 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLVVA-VGNKLYVYDLDNSK 118 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEEEE-ETTEEEEEEEETTS
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEEEe-ecCEEEEEEccCcc
Confidence 88999999884 10 01211 12446888888766 4444443 35799999998876
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=95.20 E-value=1.6 Score=38.91 Aligned_cols=150 Identities=14% Similarity=0.049 Sum_probs=76.3
Q ss_pred CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEe
Q 037120 107 KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDI 186 (489)
Q Consensus 107 ~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~ 186 (489)
++.++.+++.++.|..||..+++..-.. ........ . . ...+ . .++.+..+ +.|..+|.
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~------~~~~~~~~---------~--~-~~~~-~-~v~v~~~~-~~l~~~d~ 93 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRF------DLPGPISG---------A--P-VVDG-G-RVYVGTSD-GSLYALDA 93 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEE------ECSSCGGS---------G--E-EEET-T-EEEEEETT-SEEEEEET
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEe------eccccccc---------e--e-eecc-c-ccccccce-eeeEeccc
Confidence 5566777789999999999886544321 00000000 0 1 1112 2 44444455 89999997
Q ss_pred ccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCc--------
Q 037120 187 GYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGT-------- 258 (489)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~-------- 258 (489)
..+. .+-..... ...... ..........+. .++.+..++.|..+|.++++.. . ........
T Consensus 94 ~tG~-----~~W~~~~~--~~~~~~-~~~~~~~~~~~~-~~~~~~~~g~l~~~d~~tG~~~-w-~~~~~~~~~~~~~~~~ 162 (238)
T PF13360_consen 94 KTGK-----VLWSIYLT--SSPPAG-VRSSSSPAVDGD-RLYVGTSSGKLVALDPKTGKLL-W-KYPVGEPRGSSPISSF 162 (238)
T ss_dssp TTSC-----EEEEEEE---SSCTCS-TB--SEEEEETT-EEEEEETCSEEEEEETTTTEEE-E-EEESSTT-SS--EEEE
T ss_pred CCcc-----eeeeeccc--cccccc-cccccCceEecC-EEEEEeccCcEEEEecCCCcEE-E-EeecCCCCCCcceeee
Confidence 4432 21110000 000011 112222222366 7888888999999999998732 1 12111111
Q ss_pred --eeEEEEeecCCEEEEEeCCCe-EEEEEcCCCcc
Q 037120 259 --LNSIQLHAENQIIFAAGKHGS-IYLWDLRGGRT 290 (489)
Q Consensus 259 --v~~~~~~p~~~~l~~~~~dg~-i~lwd~~~~~~ 290 (489)
+..-....++ .+++++.++. +.+ |+.+++.
T Consensus 163 ~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~ 195 (238)
T PF13360_consen 163 SDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEK 195 (238)
T ss_dssp TTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEE
T ss_pred cccccceEEECC-EEEEEcCCCeEEEE-ECCCCCE
Confidence 1222222234 7777777775 555 9988763
|
... |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.12 Score=44.56 Aligned_cols=62 Identities=11% Similarity=0.051 Sum_probs=35.7
Q ss_pred CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEe
Q 037120 108 GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDI 186 (489)
Q Consensus 108 g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~ 186 (489)
+..|++|+.+|.|.+|++...-..... .....+. |.+.--.-+...+..+++.| |.|+.|++
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~-------~~s~~e~---------i~~~Ip~~~~~~~~c~~~~d-g~ir~~n~ 131 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSDR-------VCSGEES---------IDLGIPNGRDSSLGCVGAQD-GRIRACNI 131 (238)
T ss_pred CceEEeecccceEEEecCCccchHHHh-------hhccccc---------ceeccccccccceeEEeccC-Cceeeecc
Confidence 567999999999999998842111100 0000000 22222122222377777777 99999999
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.04 E-value=3.8 Score=40.12 Aligned_cols=31 Identities=23% Similarity=0.201 Sum_probs=27.6
Q ss_pred CCceEEEEeeCCCCeEEeccCcceeEEEecc
Q 037120 448 SEGVTACVTHPLNNTIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 448 ~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~ 478 (489)
.+++..++.||+++.||.-..+|.+.|++..
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSD 246 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence 4689999999999999999999999997654
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=95.03 E-value=3.3 Score=39.29 Aligned_cols=112 Identities=11% Similarity=0.056 Sum_probs=56.4
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeec-eeeeeecCCcccCeeEEEEecC---CCcEEEEEeCC
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTR-RSVTVVGSDVQKGLSDLAFSAV---NTSRLIASDTH 233 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~---~~~~l~s~s~d 233 (489)
-++|+|.|++. ++++-- . |.|++++. .+... ..+... .. ..........++++|+ +..+.++.+..
T Consensus 4 P~~~a~~pdG~-l~v~e~-~-G~i~~~~~-~g~~~--~~v~~~~~v----~~~~~~gllgia~~p~f~~n~~lYv~~t~~ 73 (331)
T PF07995_consen 4 PRSMAFLPDGR-LLVAER-S-GRIWVVDK-DGSLK--TPVADLPEV----FADGERGLLGIAFHPDFASNGYLYVYYTNA 73 (331)
T ss_dssp EEEEEEETTSC-EEEEET-T-TEEEEEET-TTEEC--EEEEE-TTT----BTSTTBSEEEEEE-TTCCCC-EEEEEEEEE
T ss_pred ceEEEEeCCCc-EEEEeC-C-ceEEEEeC-CCcCc--ceecccccc----cccccCCcccceeccccCCCCEEEEEEEcc
Confidence 46799999974 666544 5 99999993 22110 111111 11 1445568899999995 22133433321
Q ss_pred --------CcEEEEECCCC------CcCceeeccC---CCCceeEEEEeecCCEEEEEeCCCe
Q 037120 234 --------GVVNIWDRRVG------VLPSLELSTG---SHGTLNSIQLHAENQIIFAAGKHGS 279 (489)
Q Consensus 234 --------g~i~iwd~~~~------~~~~~~~~~~---h~~~v~~~~~~p~~~~l~~~~~dg~ 279 (489)
..|.-|..... ....+..... ....-..|.|.|+|.+.++.|..+.
T Consensus 74 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~ 136 (331)
T PF07995_consen 74 DEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN 136 (331)
T ss_dssp -TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT
T ss_pred cCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC
Confidence 23433443332 0111111111 2234467999999977777776443
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.95 Score=44.06 Aligned_cols=133 Identities=11% Similarity=0.098 Sum_probs=79.0
Q ss_pred CCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCc------EEEEEeCCCcEEE
Q 037120 165 LANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTS------RLIASDTHGVVNI 238 (489)
Q Consensus 165 ~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~------~l~s~s~dg~i~i 238 (489)
.+...++.++... ..++-.|+..+ +++.... -|. .|+-+.+.|+.+. .-+.|-.|..|+-
T Consensus 343 ~dsnlil~~~~~~-~~l~klDIE~G-----KIVeEWk-------~~~-di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfr 408 (644)
T KOG2395|consen 343 ADSNLILMDGGEQ-DKLYKLDIERG-----KIVEEWK-------FED-DINMVDITPDFKFAQLTSEQTLVGLSDNSVFR 408 (644)
T ss_pred cccceEeeCCCCc-Ccceeeecccc-----eeeeEee-------ccC-CcceeeccCCcchhcccccccEEeecCCceEE
Confidence 3333344455544 66777777332 3332222 122 2666677776541 1223446889999
Q ss_pred EECCCCCcCceeeccCC----CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCC
Q 037120 239 WDRRVGVLPSLELSTGS----HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASM 313 (489)
Q Consensus 239 wd~~~~~~~~~~~~~~h----~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~ 313 (489)
||.|......+....+| .....|.+-..+| ++++||.+|.|||||- .+.. ...+++...+ |..+..+.+
T Consensus 409 iDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~----I~hVdvtad 482 (644)
T KOG2395|consen 409 IDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDA----IKHVDVTAD 482 (644)
T ss_pred ecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCc----eeeEEeecc
Confidence 99997553222222222 2334566655555 6789999999999997 4443 5556666655 999999999
Q ss_pred Ccce
Q 037120 314 LEKI 317 (489)
Q Consensus 314 ~~~i 317 (489)
|..|
T Consensus 483 GKwi 486 (644)
T KOG2395|consen 483 GKWI 486 (644)
T ss_pred CcEE
Confidence 9766
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.88 E-value=0.99 Score=47.76 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=51.1
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
.+|++++|+.+|..++.|-.+|.|.+||......... +..|...+.+|.-+.|..++. .+.++..
T Consensus 131 ~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~--------------i~e~~ap~t~vi~v~~t~~nS-~llt~D~ 195 (1206)
T KOG2079|consen 131 GPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKV--------------ITEHGAPVTGVIFVGRTSQNS-KLLTSDT 195 (1206)
T ss_pred CcceeeEecCCCceeccccCCCcEEEEEccCCcceee--------------eeecCCccceEEEEEEeCCCc-EEEEccC
Confidence 3499999999999999999999999999998443331 122333433466666666654 5666654
Q ss_pred CCCEEEEEEec
Q 037120 177 RSNVVSIYDIG 187 (489)
Q Consensus 177 d~g~i~vwd~~ 187 (489)
. |. +|.+.
T Consensus 196 ~-Gs--f~~lv 203 (1206)
T KOG2079|consen 196 G-GS--FWKLV 203 (1206)
T ss_pred C-Cc--eEEEE
Confidence 4 65 77764
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.85 E-value=1.7 Score=39.08 Aligned_cols=101 Identities=15% Similarity=0.190 Sum_probs=66.2
Q ss_pred eEEEEecCCCcEEEEEeCCCc-EEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-----CCeEEEEEcCCC
Q 037120 215 SDLAFSAVNTSRLIASDTHGV-VNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-----HGSIYLWDLRGG 288 (489)
Q Consensus 215 ~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-----dg~i~lwd~~~~ 288 (489)
..|+|+|.-+.-++.+-.-|+ ..++|......+...........--.=.|+|||.+|+++-. .|.|-|||.+.+
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 457888887755555555554 56889887765532111100111112369999999999844 478999999964
Q ss_pred c-ccceeecCCccCCCCeeEEEeCCCCcceee
Q 037120 289 R-TSAPFHNHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 289 ~-~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
- .+-++..|.-. -..+.|.+||+.++-
T Consensus 151 fqrvgE~~t~GiG----pHev~lm~DGrtlvv 178 (366)
T COG3490 151 FQRVGEFSTHGIG----PHEVTLMADGRTLVV 178 (366)
T ss_pred cceecccccCCcC----cceeEEecCCcEEEE
Confidence 3 37777777655 677888899987753
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=5.2 Score=41.12 Aligned_cols=94 Identities=9% Similarity=0.062 Sum_probs=53.0
Q ss_pred cCeeEEEEecCCCcEEEEEe------CCC--cEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCC------
Q 037120 212 KGLSDLAFSAVNTSRLIASD------THG--VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKH------ 277 (489)
Q Consensus 212 ~~v~~~~~~~~~~~~l~s~s------~dg--~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~d------ 277 (489)
..+.+.+++|+|+ .++..- .|. .|.+++..... .....+ ...+.-.|+|+|..+.+....
T Consensus 350 ~~vsspaiSpdG~-~vA~v~~~~~~~~d~~s~Lwv~~~gg~~---~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v 423 (591)
T PRK13616 350 GNITSAALSRSGR-QVAAVVTLGRGAPDPASSLWVGPLGGVA---VQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRV 423 (591)
T ss_pred cCcccceECCCCC-EEEEEEeecCCCCCcceEEEEEeCCCcc---eeeecC--CCCCCceECCCCCceEEEecCcceEEE
Confidence 3678899999999 555444 243 45555643221 212222 237788999998877766432
Q ss_pred ------CeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCccee
Q 037120 278 ------GSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 278 ------g~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
+.+.+.+++.+.... ..... |.++.|+|||..++
T Consensus 424 ~~~~~~gql~~~~vd~ge~~~---~~~g~----Issl~wSpDG~RiA 463 (591)
T PRK13616 424 IRDPATGQLARTPVDASAVAS---RVPGP----ISELQLSRDGVRAA 463 (591)
T ss_pred eccCCCceEEEEeccCchhhh---ccCCC----cCeEEECCCCCEEE
Confidence 233333443332211 11223 78888888887765
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.075 Score=55.59 Aligned_cols=88 Identities=16% Similarity=0.285 Sum_probs=62.6
Q ss_pred EEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCe
Q 037120 226 RLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPL 305 (489)
Q Consensus 226 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v 305 (489)
.++.|+..|.|...|.+..=.+ ...-..-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+..+..+ ...|
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~-~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap-~t~v 178 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGP-LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAP-VTGV 178 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccch-hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCc-cceE
Confidence 6788888899998888763211 1112233588999999999999999999999999999999888887765533 1123
Q ss_pred eEEEeCCCCc
Q 037120 306 TSLKLASMLE 315 (489)
Q Consensus 306 ~~l~~~~~~~ 315 (489)
-.+.+..++.
T Consensus 179 i~v~~t~~nS 188 (1206)
T KOG2079|consen 179 IFVGRTSQNS 188 (1206)
T ss_pred EEEEEeCCCc
Confidence 3334444444
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.28 Score=51.84 Aligned_cols=158 Identities=9% Similarity=0.056 Sum_probs=91.9
Q ss_pred eeEEEECCCCcEEEEEec--CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 99 ISALDFDCKGIYLVSATR--SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~--dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
|..+...+|+...++... +-.|..||+.+......+ +..+......-.....-..++.|+|.-....+....
T Consensus 103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~------~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~ 176 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYE------TTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLS 176 (1405)
T ss_pred ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhh------hccccccccchhccccccccccccCCccchhhhhcc
Confidence 555666777766655443 447889999874333211 000000000011112226789999886655566666
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc-CC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST-GS 255 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~h 255 (489)
| +.|++..+.... ..+.. ..-...+++++|+|.|+ .++.|-..|++.-|-..-..+..+.... ..
T Consensus 177 d-lsl~V~~~~~~~----~~v~s--------~p~t~~~Tav~WSprGK-Ql~iG~nnGt~vQy~P~leik~~ip~Pp~~e 242 (1405)
T KOG3630|consen 177 D-LSLRVKSTKQLA----QNVTS--------FPVTNSQTAVLWSPRGK-QLFIGRNNGTEVQYEPSLEIKSEIPEPPVEE 242 (1405)
T ss_pred c-cchhhhhhhhhh----hhhcc--------cCcccceeeEEeccccc-eeeEecCCCeEEEeecccceeecccCCCcCC
Confidence 6 999998883221 11111 12345889999999999 9999999999988865432111111110 11
Q ss_pred CCceeEEEEeecCCEEEEEeC
Q 037120 256 HGTLNSIQLHAENQIIFAAGK 276 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~~ 276 (489)
...|.+|+|-....++++-+.
T Consensus 243 ~yrvl~v~Wl~t~eflvvy~n 263 (1405)
T KOG3630|consen 243 NYRVLSVTWLSTQEFLVVYGN 263 (1405)
T ss_pred CcceeEEEEecceeEEEEecc
Confidence 467999999877777665543
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=5.6 Score=38.80 Aligned_cols=157 Identities=9% Similarity=0.011 Sum_probs=77.6
Q ss_pred CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCce-eEEEeeCCCCCEEEEEecCCCEEEEEEe
Q 037120 108 GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQL-DAVRWNLANQDEVACASTRSNVVSIYDI 186 (489)
Q Consensus 108 g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V-~~v~~~~~~~~~l~s~~~d~g~i~vwd~ 186 (489)
+..+.+++.+|.+.-+|..+++..=.. ......... +......+ ..+... + ..++.++.+ |.+.-+|.
T Consensus 69 ~~~vy~~~~~g~l~ald~~tG~~~W~~------~~~~~~~~~-~~~~~~~~~~~~~v~--~-~~v~v~~~~-g~l~ald~ 137 (394)
T PRK11138 69 YNKVYAADRAGLVKALDADTGKEIWSV------DLSEKDGWF-SKNKSALLSGGVTVA--G-GKVYIGSEK-GQVYALNA 137 (394)
T ss_pred CCEEEEECCCCeEEEEECCCCcEeeEE------cCCCccccc-ccccccccccccEEE--C-CEEEEEcCC-CEEEEEEC
Confidence 556777778888888888775543211 000000000 00000000 001221 2 245555555 89999998
Q ss_pred ccCCCCCceeeeeceeeeeecCCcccCeeE-EEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCC----ceeE
Q 037120 187 GYISDEPVEVLKTRRSVTVVGSDVQKGLSD-LAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHG----TLNS 261 (489)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~----~v~~ 261 (489)
.++... .. .. +.+ .+.+ ... .+. .++.++.++.+..+|.++++.. .+....... ...+
T Consensus 138 ~tG~~~----W~-~~-----~~~---~~~ssP~v--~~~-~v~v~~~~g~l~ald~~tG~~~-W~~~~~~~~~~~~~~~s 200 (394)
T PRK11138 138 EDGEVA----WQ-TK-----VAG---EALSRPVV--SDG-LVLVHTSNGMLQALNESDGAVK-WTVNLDVPSLTLRGESA 200 (394)
T ss_pred CCCCCc----cc-cc-----CCC---ceecCCEE--ECC-EEEEECCCCEEEEEEccCCCEe-eeecCCCCcccccCCCC
Confidence 544211 10 00 011 1111 111 133 5666778899999999998732 211111000 0011
Q ss_pred EEEeecCCEEEEEeCCCeEEEEEcCCCccccee
Q 037120 262 IQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPF 294 (489)
Q Consensus 262 ~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~ 294 (489)
-.. .+..++.++.+|.+..+|..+|+.+-..
T Consensus 201 P~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~ 231 (394)
T PRK11138 201 PAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQ 231 (394)
T ss_pred CEE--ECCEEEEEcCCCEEEEEEccCChhhhee
Confidence 111 2345777888999999999998865443
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.25 E-value=3.4 Score=36.03 Aligned_cols=109 Identities=14% Similarity=0.089 Sum_probs=65.0
Q ss_pred EEEeeCCCCCEEEEEecCCCEEEEEEecc--CCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 160 AVRWNLANQDEVACASTRSNVVSIYDIGY--ISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 160 ~v~~~~~~~~~l~s~~~d~g~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
.++|+.+.+.+.+.-+.+ -+|.-||... +......++-..+.. .+ .+|. .--.++..-.|. +++++-..++|.
T Consensus 162 gl~Wd~d~K~fY~iDsln-~~V~a~dyd~~tG~~snr~~i~dlrk~-~~-~e~~-~PDGm~ID~eG~-L~Va~~ng~~V~ 236 (310)
T KOG4499|consen 162 GLAWDSDAKKFYYIDSLN-YEVDAYDYDCPTGDLSNRKVIFDLRKS-QP-FESL-EPDGMTIDTEGN-LYVATFNGGTVQ 236 (310)
T ss_pred cccccccCcEEEEEccCc-eEEeeeecCCCcccccCcceeEEeccC-CC-cCCC-CCCcceEccCCc-EEEEEecCcEEE
Confidence 389998877677777776 8898898542 211111111111100 00 0111 112234455666 888888899999
Q ss_pred EEECCCCCcCceeeccCCCCceeEEEEee-cCCEEEEEe
Q 037120 238 IWDRRVGVLPSLELSTGSHGTLNSIQLHA-ENQIIFAAG 275 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~~~~ 275 (489)
..|..+++ .+..+.-....|+|++|-- +-..+++++
T Consensus 237 ~~dp~tGK--~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 237 KVDPTTGK--ILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred EECCCCCc--EEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 99999998 5555555578999999963 334444443
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=93.93 E-value=2.7 Score=43.22 Aligned_cols=162 Identities=7% Similarity=0.044 Sum_probs=80.0
Q ss_pred eeEEEECCCCcEEEEEecC-CeEEEEeCCCccccc-CCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 99 ISALDFDCKGIYLVSATRS-GCLTVHDFESLYYQC-NGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~d-g~i~vwd~~~~~~~~-~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
...-.|+|+|..|++.... ..+++.+-....... ... ..|... . .....|..++|+||+..+++...
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~v--d~ge~~------~--~~~g~Issl~wSpDG~RiA~i~~- 467 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPV--DASAVA------S--RVPGPISELQLSRDGVRAAMIIG- 467 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEec--cCchhh------h--ccCCCcCeEEECCCCCEEEEEEC-
Confidence 6778899999888887643 233333322110000 000 000000 0 11123899999999986666553
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccC--
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTG-- 254 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-- 254 (489)
+.|.+=-+....... ..+....... .+-...+.++.|..++. ++ .+..++...+|-+.-...... ....
T Consensus 468 --g~v~Va~Vvr~~~G~-~~l~~~~~l~---~~l~~~~~~l~W~~~~~-L~-V~~~~~~~~v~~v~vDG~~~~-~~~~~n 538 (591)
T PRK13616 468 --GKVYLAVVEQTEDGQ-YALTNPREVG---PGLGDTAVSLDWRTGDS-LV-VGRSDPEHPVWYVNLDGSNSD-ALPSRN 538 (591)
T ss_pred --CEEEEEEEEeCCCCc-eeecccEEee---cccCCccccceEecCCE-EE-EEecCCCCceEEEecCCcccc-ccCCCC
Confidence 777775443221121 2221111111 22223468899999887 44 445455555565443221111 1111
Q ss_pred CCCceeEEEEeecCCEEEEEeCCCeEEE
Q 037120 255 SHGTLNSIQLHAENQIIFAAGKHGSIYL 282 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~dg~i~l 282 (489)
...++.+++-+++ .++.+..+|.+.+
T Consensus 539 ~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 539 LSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred ccCceEEEecCCc--eEEEEcCCceEEe
Confidence 2456667776653 4666666775444
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=93.66 E-value=2.1 Score=43.67 Aligned_cols=106 Identities=19% Similarity=0.224 Sum_probs=64.7
Q ss_pred CeeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCcCceeeccCCCCceeEEEEe--ecCCEEEEEeCCCeEEEEEcCC--
Q 037120 213 GLSDLAFSAVNTSRLIASD-THGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLH--AENQIIFAAGKHGSIYLWDLRG-- 287 (489)
Q Consensus 213 ~v~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~--p~~~~l~~~~~dg~i~lwd~~~-- 287 (489)
...-+.-+.-++ ++... ....+.|||.+.+....-+.+ ...+.|..+.|. |+++.+++.|..+.|.+|--..
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d 107 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD 107 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence 334444454444 44444 455799999998753322222 446889999985 6899999999999999985421
Q ss_pred ----C---cccceee--cCCccCCCCeeEEEeCCCCcceeeccccc
Q 037120 288 ----G---RTSAPFH--NHKEVCHLPLTSLKLASMLEKIGTLKAQS 324 (489)
Q Consensus 288 ----~---~~~~~~~--~~~~~~~~~v~~l~~~~~~~~i~~~~~~~ 324 (489)
+ ..++.+. .+. ..||.+..|.++|..+.....+.
T Consensus 108 y~~~~p~w~~i~~i~i~~~T---~h~Igds~Wl~~G~LvV~sGNql 150 (631)
T PF12234_consen 108 YTNKGPSWAPIRKIDISSHT---PHPIGDSIWLKDGTLVVGSGNQL 150 (631)
T ss_pred hhcCCcccceeEEEEeecCC---CCCccceeEecCCeEEEEeCCEE
Confidence 1 1133322 222 12478888888887775433333
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.36 Score=49.83 Aligned_cols=169 Identities=14% Similarity=0.091 Sum_probs=92.5
Q ss_pred CceeEEEECCC-CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCC-CEEEEE
Q 037120 97 PGISALDFDCK-GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQ-DEVACA 174 (489)
Q Consensus 97 ~~V~~~~fs~~-g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~-~~l~s~ 174 (489)
.+|-.++|-.- -..++ -.-|.+.|||++-. . |.+.+......-...+.++.-|.|.|--. ...++.
T Consensus 133 G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l---~-------G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~ 200 (1283)
T KOG1916|consen 133 GGVGDLQFAHTKCPKGR--RLVGELFVYDVDVL---Q-------GEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICY 200 (1283)
T ss_pred CCcccccccccCChHHH--HHhhhhheeehHhh---c-------cccccceEEeecCcCCCCcceeeecccccccceeee
Confidence 34667777432 11111 23467889998751 1 12333333333333334455677766411 133444
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEE-----------EecCCCcEEEEEeCCCcEEEEECCC
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLA-----------FSAVNTSRLIASDTHGVVNIWDRRV 243 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~-----------~~~~~~~~l~s~s~dg~i~iwd~~~ 243 (489)
..++++|++..+..... .- +.+|...+.+++ .+|||. .|+.+..||.++.|.+.-
T Consensus 201 ~~~~~~i~lL~~~ra~~---------~l----~rsHs~~~~d~a~~~~g~~~l~~lSpDGt-v~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 201 GLKGGEIRLLNINRALR---------SL----FRSHSQRVTDMAFFAEGVLKLASLSPDGT-VFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred ccCCCceeEeeechHHH---------HH----HHhcCCCcccHHHHhhchhhheeeCCCCc-EEEEeecCCccceeeeee
Confidence 44458888877732110 00 133555555443 578898 899999999988887653
Q ss_pred CCc---CceeeccCCC-CceeEEEEeec---------CCEEEEEeC-CCeEEEEEcCCCccc
Q 037120 244 GVL---PSLELSTGSH-GTLNSIQLHAE---------NQIIFAAGK-HGSIYLWDLRGGRTS 291 (489)
Q Consensus 244 ~~~---~~~~~~~~h~-~~v~~~~~~p~---------~~~l~~~~~-dg~i~lwd~~~~~~~ 291 (489)
..+ .|+...+.|. .+-.|.-++.+ -.++++++. ..-+++|.....+|+
T Consensus 267 ~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 267 TGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 221 1555555666 33333333321 135667766 677999998888875
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.43 E-value=3.1 Score=38.77 Aligned_cols=108 Identities=11% Similarity=0.045 Sum_probs=62.1
Q ss_pred eEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCC-cEE
Q 037120 159 DAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG-VVN 237 (489)
Q Consensus 159 ~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg-~i~ 237 (489)
..|+|+|+++.++++=+.. +.|.-|++....... -....... +......--.++...+|. +.+++-.+| .|.
T Consensus 166 NGla~SpDg~tly~aDT~~-~~i~r~~~d~~~g~~---~~~~~~~~--~~~~~G~PDG~~vDadG~-lw~~a~~~g~~v~ 238 (307)
T COG3386 166 NGLAFSPDGKTLYVADTPA-NRIHRYDLDPATGPI---GGRRGFVD--FDEEPGLPDGMAVDADGN-LWVAAVWGGGRVV 238 (307)
T ss_pred CceEECCCCCEEEEEeCCC-CeEEEEecCcccCcc---CCcceEEE--ccCCCCCCCceEEeCCCC-EEEecccCCceEE
Confidence 3499999998677766655 888888884211110 00011111 122334555667777777 443333333 899
Q ss_pred EEECCCCCcCceeeccCCCCceeEEEEe-ecCCEEEEEeC
Q 037120 238 IWDRRVGVLPSLELSTGSHGTLNSIQLH-AENQIIFAAGK 276 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~v~~~~~~-p~~~~l~~~~~ 276 (489)
+|+.. ++ .+....-....+++++|- |+.+.|++++.
T Consensus 239 ~~~pd-G~--l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 239 RFNPD-GK--LLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred EECCC-Cc--EEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 99988 55 344444333667788874 45666666655
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.39 E-value=3.6 Score=39.66 Aligned_cols=153 Identities=12% Similarity=0.104 Sum_probs=74.0
Q ss_pred ceeEEEECCCCcEEEEEe-----------cCC-eEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeC
Q 037120 98 GISALDFDCKGIYLVSAT-----------RSG-CLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNL 165 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~-----------~dg-~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~ 165 (489)
....|+|+++|+++++-. ..+ .|.+++-.... |.......+...... ...++|.+
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgd----------G~~d~~~vfa~~l~~---p~Gi~~~~ 81 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGD----------GKYDKSNVFAEELSM---VTGLAVAV 81 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCC----------CCcceeEEeecCCCC---ccceeEec
Confidence 467889999999887753 223 66666543210 011110111111112 45588888
Q ss_pred CCCCEEEEEecCCCEEEEE-EeccCC-CC-CceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC---------
Q 037120 166 ANQDEVACASTRSNVVSIY-DIGYIS-DE-PVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH--------- 233 (489)
Q Consensus 166 ~~~~~l~s~~~d~g~i~vw-d~~~~~-~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d--------- 233 (489)
++ ++++.. ..|..| |..... .. ..+++... +......+....+.++|.|+|. +.++-+..
T Consensus 82 ~G--lyV~~~---~~i~~~~d~~gdg~ad~~~~~l~~~--~~~~~~~~~~~~~~l~~gpDG~-LYv~~G~~~~~~~~~~~ 153 (367)
T TIGR02604 82 GG--VYVATP---PDILFLRDKDGDDKADGEREVLLSG--FGGQINNHHHSLNSLAWGPDGW-LYFNHGNTLASKVTRPG 153 (367)
T ss_pred CC--EEEeCC---CeEEEEeCCCCCCCCCCccEEEEEc--cCCCCCcccccccCceECCCCC-EEEecccCCCceeccCC
Confidence 76 565543 344434 442211 00 11111110 1000011345678899999998 55544411
Q ss_pred ----------CcEEEEECCCCCcCceeecc-CCCCceeEEEEeecCCEEEEEe
Q 037120 234 ----------GVVNIWDRRVGVLPSLELST-GSHGTLNSIQLHAENQIIFAAG 275 (489)
Q Consensus 234 ----------g~i~iwd~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~~~~ 275 (489)
|.|.-+|...++ ++.+. ++ .....++|+|+|+++++-.
T Consensus 154 ~~~~~~~~~~g~i~r~~pdg~~---~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 154 TSDESRQGLGGGLFRYNPDGGK---LRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred CccCcccccCceEEEEecCCCe---EEEEecCc-CCCccceECCCCCEEEEcc
Confidence 345555554433 22222 22 2245789999988765543
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=93.34 E-value=4.4 Score=41.96 Aligned_cols=167 Identities=13% Similarity=0.103 Sum_probs=87.5
Q ss_pred CcEEEEEecCCeEEEEeCCCcccccC-------CCCCCCCCcccccccccCC-CCCCceeEEEeeCCCC-CEEEEEecCC
Q 037120 108 GIYLVSATRSGCLTVHDFESLYYQCN-------GTLPGVGLKEDQSKHLLHI-PLPQQLDAVRWNLANQ-DEVACASTRS 178 (489)
Q Consensus 108 g~~la~g~~dg~i~vwd~~~~~~~~~-------~~~~~~g~~~~~~~~~~h~-~~~~~V~~v~~~~~~~-~~l~s~~~d~ 178 (489)
+++|+++. .+.|.||+......... .+.+. ........+-. .....|..+....-+. .+|+.+.+|
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~---~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~Dd- 123 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPE---FTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDD- 123 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCcc---ccccccccccCCCCCceeeEEEecccCCeeEEEEEecC-
Confidence 66777765 67899999876443221 00000 00000000000 0112255555443333 355555555
Q ss_pred CEEEEEEeccCC-----C-CC------ceeeeeceeeeeecCCcccCeeEEEEe--cCCCcEEEEEeCCCcEEEEECCCC
Q 037120 179 NVVSIYDIGYIS-----D-EP------VEVLKTRRSVTVVGSDVQKGLSDLAFS--AVNTSRLIASDTHGVVNIWDRRVG 244 (489)
Q Consensus 179 g~i~vwd~~~~~-----~-~~------~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~l~s~s~dg~i~iwd~~~~ 244 (489)
|.|.+|.+.... . .. ...+++. +. ..-...+++++++ .... +||.+++...|.||-....
T Consensus 124 G~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~--f~---~~v~~SaWGLdIh~~~~~r-lIAVSsNs~~VTVFaf~l~ 197 (717)
T PF08728_consen 124 GDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPF--FH---LRVGASAWGLDIHDYKKSR-LIAVSSNSQEVTVFAFALV 197 (717)
T ss_pred CeEEEEEHHHHHHHHHhhccccccccccccCCCC--eE---eecCCceeEEEEEecCcce-EEEEecCCceEEEEEEecc
Confidence 999999774210 0 00 0011111 11 1123488999998 6666 7888888888887755442
Q ss_pred CcC-ceeeccCCCCceeEEEEeecC-----C-EEEEEeCCCeEEEEEc
Q 037120 245 VLP-SLELSTGSHGTLNSIQLHAEN-----Q-IIFAAGKHGSIYLWDL 285 (489)
Q Consensus 245 ~~~-~~~~~~~h~~~v~~~~~~p~~-----~-~l~~~~~dg~i~lwd~ 285 (489)
... .......|..-|.+|+|-++. . .+++++-.|.+-+|++
T Consensus 198 ~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 198 DERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 111 111112355678899997754 2 5555666999988887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.31 Score=29.87 Aligned_cols=31 Identities=19% Similarity=0.373 Sum_probs=25.2
Q ss_pred CceeEEEEeecC---CEEEEEeCCCeEEEEEcCC
Q 037120 257 GTLNSIQLHAEN---QIIFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 257 ~~v~~~~~~p~~---~~l~~~~~dg~i~lwd~~~ 287 (489)
+.|.++.|+|.. .+|+.+-.-|.|.|+|+|+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468899999854 4777776789999999995
|
It contains a characteristic DLL sequence motif. |
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.79 Score=39.76 Aligned_cols=96 Identities=14% Similarity=0.089 Sum_probs=65.4
Q ss_pred eeEEEEecCCCcEEEEEeCCCcEEEEE--CCCCCcC---ceeecc---CCCCc-eeEEEEeecCCEEEEEeCCCeEEEEE
Q 037120 214 LSDLAFSAVNTSRLIASDTHGVVNIWD--RRVGVLP---SLELST---GSHGT-LNSIQLHAENQIIFAAGKHGSIYLWD 284 (489)
Q Consensus 214 v~~~~~~~~~~~~l~s~s~dg~i~iwd--~~~~~~~---~~~~~~---~h~~~-v~~~~~~p~~~~l~~~~~dg~i~lwd 284 (489)
-+.++|..+.+.+.++-+.+-.|.-|| ..++... .+..+. ..+.. --.++++.+|.+.+++-..++|...|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 356899988885566667888888888 4444211 111111 11111 12456677888888888899999999
Q ss_pred cCCCcccceeecCCccCCCCeeEEEeCCC
Q 037120 285 LRGGRTSAPFHNHKEVCHLPLTSLKLASM 313 (489)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 313 (489)
..+|+.+.++.-.... |++++|--.
T Consensus 240 p~tGK~L~eiklPt~q----itsccFgGk 264 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQ----ITSCCFGGK 264 (310)
T ss_pred CCCCcEEEEEEcCCCc----eEEEEecCC
Confidence 9999999988876655 899888643
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.30 E-value=7.1 Score=36.53 Aligned_cols=118 Identities=14% Similarity=0.050 Sum_probs=64.1
Q ss_pred eeEEEECCCCcEEEEEec--CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 99 ISALDFDCKGIYLVSATR--SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~--dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
...++++.||+++..-.. --.|.|-|+...+.... .+...| .-.-|.++.-+.+-+.
T Consensus 97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~e---------i~~PGC------------~~iyP~~~~~F~~lC~ 155 (342)
T PF06433_consen 97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGE---------IDTPGC------------WLIYPSGNRGFSMLCG 155 (342)
T ss_dssp GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEE---------EEGTSE------------EEEEEEETTEEEEEET
T ss_pred ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeee---------ecCCCE------------EEEEecCCCceEEEec
Confidence 445678899988877554 56788999988555442 111111 2222333334555555
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGV 245 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 245 (489)
| |++.-..+....... ......| ...+...+..-++...+. .++--+.+|.|+--|+....
T Consensus 156 D-Gsl~~v~Ld~~Gk~~---~~~t~~F---~~~~dp~f~~~~~~~~~~-~~~F~Sy~G~v~~~dlsg~~ 216 (342)
T PF06433_consen 156 D-GSLLTVTLDADGKEA---QKSTKVF---DPDDDPLFEHPAYSRDGG-RLYFVSYEGNVYSADLSGDS 216 (342)
T ss_dssp T-SCEEEEEETSTSSEE---EEEEEES---STTTS-B-S--EEETTTT-EEEEEBTTSEEEEEEETTSS
T ss_pred C-CceEEEEECCCCCEe---Eeecccc---CCCCcccccccceECCCC-eEEEEecCCEEEEEeccCCc
Confidence 6 999999985432221 1111112 122222333444555555 56667889999998887654
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=93.21 E-value=1.9 Score=41.43 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=32.9
Q ss_pred cCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce--eeccC---------------CCCceeEEEEeecCCEEEEE
Q 037120 212 KGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL--ELSTG---------------SHGTLNSIQLHAENQIIFAA 274 (489)
Q Consensus 212 ~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~~---------------h~~~v~~~~~~p~~~~l~~~ 274 (489)
.-|++|..+.|++.+.+++=.+|.|+-||+.....+.+ +...+ -.+...-+.+|-||+.|+.+
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT 391 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT 391 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence 46899999999995556666999999999998766522 11111 01233567777777777766
Q ss_pred e
Q 037120 275 G 275 (489)
Q Consensus 275 ~ 275 (489)
.
T Consensus 392 n 392 (461)
T PF05694_consen 392 N 392 (461)
T ss_dssp -
T ss_pred e
Confidence 4
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=93.15 E-value=7.2 Score=36.19 Aligned_cols=154 Identities=13% Similarity=0.137 Sum_probs=75.1
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..+..+..+++|+++|++..-....-||--.. ...++... ....|.++.|.|++. +.+.+.
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~------------~w~~~~r~-----~~~riq~~gf~~~~~-lw~~~~- 205 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQT------------TWQPHNRN-----SSRRIQSMGFSPDGN-LWMLAR- 205 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-S------------S-EEEE-------SSS-EEEEEE-TTS--EEEEET-
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCc------------cceEEccC-----ccceehhceecCCCC-EEEEeC-
Confidence 34888889999999999877766677775531 11111111 112299999999965 555554
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc---
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST--- 253 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--- 253 (489)
+|.|+.=+.... ........ .....-.-.+.+++|.+++. ..++|+ .|.+. .....++ ..+...
T Consensus 206 -Gg~~~~s~~~~~----~~~w~~~~---~~~~~~~~~~ld~a~~~~~~-~wa~gg-~G~l~-~S~DgGk--tW~~~~~~~ 272 (302)
T PF14870_consen 206 -GGQIQFSDDPDD----GETWSEPI---IPIKTNGYGILDLAYRPPNE-IWAVGG-SGTLL-VSTDGGK--TWQKDRVGE 272 (302)
T ss_dssp -TTEEEEEE-TTE----EEEE---B----TTSS--S-EEEEEESSSS--EEEEES-TT-EE-EESSTTS--S-EE-GGGT
T ss_pred -CcEEEEccCCCC----cccccccc---CCcccCceeeEEEEecCCCC-EEEEeC-CccEE-EeCCCCc--cceECcccc
Confidence 489888872111 01111100 00011123578999998877 666555 55443 3333333 222221
Q ss_pred CCCCceeEEEEeecCCEEEEEeCCCeEEEE
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLW 283 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~dg~i~lw 283 (489)
.-..-++.+.|.+.. .-++-+.+|.|--|
T Consensus 273 ~~~~n~~~i~f~~~~-~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 273 NVPSNLYRIVFVNPD-KGFVLGQDGVLLRY 301 (302)
T ss_dssp TSSS---EEEEEETT-EEEEE-STTEEEEE
T ss_pred CCCCceEEEEEcCCC-ceEEECCCcEEEEe
Confidence 223457888897654 45666778877654
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.39 Score=29.43 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=25.8
Q ss_pred CeeEEEEecCCC--cEEEEEeCCCcEEEEECCC
Q 037120 213 GLSDLAFSAVNT--SRLIASDTHGVVNIWDRRV 243 (489)
Q Consensus 213 ~v~~~~~~~~~~--~~l~s~s~dg~i~iwd~~~ 243 (489)
.|.+++|+|... .+|+-+-.-|.|.|+|+|+
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 688999997544 5788777889999999996
|
It contains a characteristic DLL sequence motif. |
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.00 E-value=6.2 Score=35.03 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=52.4
Q ss_pred EEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceee
Q 037120 217 LAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 217 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~ 295 (489)
+...++.+.+++.|+..+.+.--|..+++.. ++... ...|.+-+.- -|++++.|+..|.+++.+..+|.....+.
T Consensus 16 LVV~~dskT~v~igSHs~~~~avd~~sG~~~-We~il--g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~ 90 (354)
T KOG4649|consen 16 LVVCNDSKTLVVIGSHSGIVIAVDPQSGNLI-WEAIL--GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFV 90 (354)
T ss_pred EEEecCCceEEEEecCCceEEEecCCCCcEE-eehhh--CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeee
Confidence 3445566658888999999999999988632 22222 3444444333 57789999999999999999987554444
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=92.95 E-value=2.5 Score=43.22 Aligned_cols=120 Identities=16% Similarity=0.163 Sum_probs=67.7
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEee--CCCCCEEEEEe
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWN--LANQDEVACAS 175 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~--~~~~~~l~s~~ 175 (489)
...-+.-|.-++.-++-+....+.|||.........+ .+ ..... |.+++|. |+++.+++.|-
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~------------~f-~~~~~---I~dLDWtst~d~qsiLaVGf 94 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEE------------SF-SEDDP---IRDLDWTSTPDGQSILAVGF 94 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEee------------ee-cCCCc---eeeceeeecCCCCEEEEEEc
Confidence 3444444444444444444568999999885433221 11 11122 8889995 77877777777
Q ss_pred cCCCEEEEEEec-c--CCCCCceeeeeceeeeeecCCcc-cCeeEEEEecCCCcEEEEEeCCCcEEEEECC
Q 037120 176 TRSNVVSIYDIG-Y--ISDEPVEVLKTRRSVTVVGSDVQ-KGLSDLAFSAVNTSRLIASDTHGVVNIWDRR 242 (489)
Q Consensus 176 ~d~g~i~vwd~~-~--~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 242 (489)
.+.|.+|--. . ....| ...+.+.... ..|+ .+|.+..|.++|. +++.+ ++.+.|+|-.
T Consensus 95 --~~~v~l~~Q~R~dy~~~~p--~w~~i~~i~i--~~~T~h~Igds~Wl~~G~-LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 95 --PHHVLLYTQLRYDYTNKGP--SWAPIRKIDI--SSHTPHPIGDSIWLKDGT-LVVGS--GNQLFVFDKW 156 (631)
T ss_pred --CcEEEEEEccchhhhcCCc--ccceeEEEEe--ecCCCCCccceeEecCCe-EEEEe--CCEEEEECCC
Confidence 5799988542 1 11111 1112222111 3333 5789999999997 44444 4688888754
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=91.65 E-value=10 Score=34.37 Aligned_cols=113 Identities=9% Similarity=0.089 Sum_probs=64.5
Q ss_pred eeEEEeeCCCCCEEEEEe-cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcE
Q 037120 158 LDAVRWNLANQDEVACAS-TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVV 236 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~-~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i 236 (489)
+.+.+++++++.+.+... .+...+.++.. .... ..+. .+ ..+..-.|.+++. ..+....+...
T Consensus 26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~--~~~~---------~g--~~l~~PS~d~~g~-~W~v~~~~~~~ 89 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPV--RPVL---------TG--GSLTRPSWDPDGW-VWTVDDGSGGV 89 (253)
T ss_pred ccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcc--eeec---------cC--CccccccccCCCC-EEEEEcCCCce
Confidence 778999999875544441 22245555544 2111 1110 11 2567778999976 55555556666
Q ss_pred EEEE-CCCCCcCceeeccCCC-CceeEEEEeecCCEEEEEeC---CCeEEEEEcC
Q 037120 237 NIWD-RRVGVLPSLELSTGSH-GTLNSIQLHAENQIIFAAGK---HGSIYLWDLR 286 (489)
Q Consensus 237 ~iwd-~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~l~~~~~---dg~i~lwd~~ 286 (489)
+++. ...+.......-.... ..|.++.++|||..++.... ++.|.+=-+.
T Consensus 90 ~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~ 144 (253)
T PF10647_consen 90 RVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVV 144 (253)
T ss_pred EEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEE
Confidence 6663 3333322222211111 28999999999998777753 5677766543
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.46 E-value=12 Score=34.91 Aligned_cols=97 Identities=14% Similarity=0.117 Sum_probs=60.5
Q ss_pred ccCeeEEEEecCCCcEEEEEeCCCcEEEEECCC--C---CcCceeeccCCCCceeEEEEeecCCEEEEEeCCC-eEEEEE
Q 037120 211 QKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRV--G---VLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHG-SIYLWD 284 (489)
Q Consensus 211 ~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~---~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg-~i~lwd 284 (489)
-..-+.|+|+||++.++++=+..+.|.-|++.. + ............+..-.++...+|.+-+++..+| .|.+|+
T Consensus 162 ~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~ 241 (307)
T COG3386 162 LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFN 241 (307)
T ss_pred EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEEC
Confidence 345678999999984444445668888887752 1 1111112222345556778888888765554444 889998
Q ss_pred cCCCcccceeecCCccCCCCeeEEEeCC
Q 037120 285 LRGGRTSAPFHNHKEVCHLPLTSLKLAS 312 (489)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 312 (489)
.. |+.+..+...... +++++|--
T Consensus 242 pd-G~l~~~i~lP~~~----~t~~~FgG 264 (307)
T COG3386 242 PD-GKLLGEIKLPVKR----PTNPAFGG 264 (307)
T ss_pred CC-CcEEEEEECCCCC----CccceEeC
Confidence 88 7777776654433 66666543
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=91.00 E-value=8.6 Score=40.47 Aligned_cols=91 Identities=9% Similarity=0.069 Sum_probs=55.3
Q ss_pred CCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCC------Cceeeeeceeeee-e--cCCcccCeeEEEEecCC-
Q 037120 154 LPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDE------PVEVLKTRRSVTV-V--GSDVQKGLSDLAFSAVN- 223 (489)
Q Consensus 154 ~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~------~~~~~~~~~~~~~-~--~~~h~~~v~~~~~~~~~- 223 (489)
..+.|..|..||++..+.+.|. ..|.|-.+...-+. ....+.+....+. . ...+...|..+.|+|.+
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~---~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~ 159 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGP---RGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSE 159 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcC---CcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCC
Confidence 3456999999999975555555 56666666321000 0011111111000 0 13456789999999985
Q ss_pred -CcEEEEEeCCCcEEEEECCCCCcC
Q 037120 224 -TSRLIASDTHGVVNIWDRRVGVLP 247 (489)
Q Consensus 224 -~~~l~s~s~dg~i~iwd~~~~~~~ 247 (489)
..+|+.-..|+++++||+.....+
T Consensus 160 ~~~~l~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 160 SDSHLVVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred CCCeEEEEecCCEEEEEecCCCCCC
Confidence 237788888999999999865544
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.12 E-value=3.8 Score=41.97 Aligned_cols=65 Identities=8% Similarity=0.076 Sum_probs=38.6
Q ss_pred CCCcEEEEEeCC------CcEEEEECCC-CCcCceeeccCCCCceeEEEEeecCCEEEEEeCCC--eEEEEEcCCCc
Q 037120 222 VNTSRLIASDTH------GVVNIWDRRV-GVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHG--SIYLWDLRGGR 289 (489)
Q Consensus 222 ~~~~~l~s~s~d------g~i~iwd~~~-~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg--~i~lwd~~~~~ 289 (489)
++. +.+.|+.+ ..+..||..+ .++..+..+.........+.+ +|.+.++||.|| .+-.||..+.+
T Consensus 463 ~~~-IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 463 KDD-IYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred CCE-EEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccccc
Confidence 455 66767654 2467899998 554433222222222233333 677788888887 67778877754
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.90 E-value=0.059 Score=51.51 Aligned_cols=135 Identities=16% Similarity=0.232 Sum_probs=93.7
Q ss_pred EEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 037120 161 VRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWD 240 (489)
Q Consensus 161 v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd 240 (489)
..|-+.+.++++++. +..+..||-.. +..... .-+....+++|..+++-.++.+-..+.+.+||
T Consensus 40 ~~w~~e~~nlavaca--~tiv~~YD~ag------q~~le~--------n~tg~aldm~wDkegdvlavlAek~~piylwd 103 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACA--NTIVIYYDKAG------QVILEL--------NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWD 103 (615)
T ss_pred eeEecCCCceehhhh--hhHHHhhhhhc------ceeccc--------CCchhHhhhhhccccchhhhhhhcCCCeeech
Confidence 578888877766666 46888888621 111111 12235567888888874556666789999999
Q ss_pred CCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 241 RRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 241 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
+.+.....+..-..|.... +.|++....++.+-..|.+.|++..+.+.+..+..|... +++++|.+.+..+
T Consensus 104 ~n~eytqqLE~gg~~s~sl--l~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RR----gtq~av~lEd~vi 174 (615)
T KOG2247|consen 104 VNSEYTQQLESGGTSSKSL--LAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRR----GTQIAVTLEDYVI 174 (615)
T ss_pred hhhhhHHHHhccCcchHHH--HhhccCCccccccccccceEEEeccchhhhhhhcccccc----eeEEEecccceee
Confidence 9886533333322333333 789999999999888999999999887766555557766 9999999988766
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=89.83 E-value=24 Score=35.60 Aligned_cols=60 Identities=20% Similarity=0.180 Sum_probs=35.5
Q ss_pred cEEEEECCCCCcCceeec-cCCCC----ceeEEEEe----ecCC---EEEEEeCCCeEEEEEcCCCcccceee
Q 037120 235 VVNIWDRRVGVLPSLELS-TGSHG----TLNSIQLH----AENQ---IIFAAGKHGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 235 ~i~iwd~~~~~~~~~~~~-~~h~~----~v~~~~~~----p~~~---~l~~~~~dg~i~lwd~~~~~~~~~~~ 295 (489)
.|.-+|..+++.. .+.. ..|.. ......+. -++. .+++++.+|.+...|.++|+.+-...
T Consensus 257 ~l~Ald~~tG~~~-W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 257 SIVALDADTGKVK-WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred eEEEEcCCCCCEE-EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 7999999988743 2221 11210 10111111 1233 57778889999999999998755543
|
The alignment model contains an 8-bladed beta-propeller. |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=89.13 E-value=3.1 Score=36.69 Aligned_cols=67 Identities=18% Similarity=0.293 Sum_probs=46.9
Q ss_pred EecCCCcEEEEEeCCCcEEEEECCCCCcCc-----eeecc-------CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcC
Q 037120 219 FSAVNTSRLIASDTHGVVNIWDRRVGVLPS-----LELST-------GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLR 286 (489)
Q Consensus 219 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-----~~~~~-------~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~ 286 (489)
+...+. ++++.+.+|.+++||+.+.+... ...+. .....|..+.++.+|.-+++-+ +|..+.||..
T Consensus 18 l~~~~~-~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGS-YLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCC-EEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 344566 78889999999999999875221 01111 2456788899998888766554 5788999876
Q ss_pred C
Q 037120 287 G 287 (489)
Q Consensus 287 ~ 287 (489)
-
T Consensus 96 L 96 (219)
T PF07569_consen 96 L 96 (219)
T ss_pred c
Confidence 4
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=88.78 E-value=2.7 Score=37.10 Aligned_cols=75 Identities=15% Similarity=0.114 Sum_probs=47.9
Q ss_pred EECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCccccccc---ccCCCCCCceeEEEeeCCCCCEEEEEecCCC
Q 037120 103 DFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKH---LLHIPLPQQLDAVRWNLANQDEVACASTRSN 179 (489)
Q Consensus 103 ~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~---~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g 179 (489)
.+..++.+|++-+.+|.++|||+.+.+...... .+.+-... ... .....|..+..+.+|. -+++-+ +|
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~-----Si~pll~~~~~~~~-~~~~~i~~~~lt~~G~-PiV~ls--ng 87 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPV-----SIAPLLNSSPVSDK-SSSPNITSCSLTSNGV-PIVTLS--NG 87 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCc-----cHHHHhcccccccC-CCCCcEEEEEEcCCCC-EEEEEe--CC
Confidence 356788999999999999999999976654321 01110000 000 2223388888887775 455555 47
Q ss_pred EEEEEEe
Q 037120 180 VVSIYDI 186 (489)
Q Consensus 180 ~i~vwd~ 186 (489)
....|+.
T Consensus 88 ~~y~y~~ 94 (219)
T PF07569_consen 88 DSYSYSP 94 (219)
T ss_pred CEEEecc
Confidence 8899987
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=88.01 E-value=6.6 Score=38.20 Aligned_cols=87 Identities=18% Similarity=0.312 Sum_probs=55.8
Q ss_pred cCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeE-EEE-eec----------------C
Q 037120 207 GSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNS-IQL-HAE----------------N 268 (489)
Q Consensus 207 ~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~-~~~-~p~----------------~ 268 (489)
+......+.+|..+|.+. +.++...=|.|.++|+.++. .++..++-.+.-.. +.. .+. .
T Consensus 303 l~D~~R~~~~i~~sP~~~-laA~tDslGRV~LiD~~~~~--vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~ 379 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGR-LAAVTDSLGRVLLIDVARGI--VVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA 379 (415)
T ss_pred eccCCceEEEEEECCCCC-EEEEEcCCCcEEEEECCCCh--hhhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence 345566788999999988 77777777999999999876 55555433322110 000 000 1
Q ss_pred CE-EEEEeCCCeEEEEEcCCCcccceeec
Q 037120 269 QI-IFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 269 ~~-l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
.+ ++-+-..|.|-||.+++|..+..+..
T Consensus 380 l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 380 LFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 12 23334489999999999887666653
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=87.89 E-value=27 Score=35.20 Aligned_cols=64 Identities=19% Similarity=0.243 Sum_probs=39.1
Q ss_pred CCCcEEEEECCCCCcCceeeccC-CC------CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeec
Q 037120 232 THGVVNIWDRRVGVLPSLELSTG-SH------GTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 232 ~dg~i~iwd~~~~~~~~~~~~~~-h~------~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
.+|.|.-.|+.+++.. .+.... +. .+...-...-.+..+++++.||.|+.+|.++|+.+-.++.
T Consensus 364 ~~G~l~AlD~~tG~~~-W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 364 GKGGLAALDPKTGKVV-WEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred CceEEEEEeCCCCcEe-eEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 4577888888887632 211111 00 1111111123567889999999999999999988666553
|
The alignment model contains an 8-bladed beta-propeller. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=87.83 E-value=20 Score=34.51 Aligned_cols=107 Identities=14% Similarity=0.102 Sum_probs=54.9
Q ss_pred eeEEEeeCCCCCEEEEEe-----------cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcE
Q 037120 158 LDAVRWNLANQDEVACAS-----------TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSR 226 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~-----------~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 226 (489)
...++|.+++. ++++.. .....|.+++-........+ ...+ .......+.+++.+++ +
T Consensus 16 P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~----~~vf----a~~l~~p~Gi~~~~~G--l 84 (367)
T TIGR02604 16 PIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDK----SNVF----AEELSMVTGLAVAVGG--V 84 (367)
T ss_pred CceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcce----eEEe----ecCCCCccceeEecCC--E
Confidence 56699999985 555532 11127777765333222111 1112 1112245778888776 4
Q ss_pred EEEEeCCCcEEEEECCCC-----CcC-ceeeccC----CCCceeEEEEeecCCEEEEEeC
Q 037120 227 LIASDTHGVVNIWDRRVG-----VLP-SLELSTG----SHGTLNSIQLHAENQIIFAAGK 276 (489)
Q Consensus 227 l~s~s~dg~i~iwd~~~~-----~~~-~~~~~~~----h~~~v~~~~~~p~~~~l~~~~~ 276 (489)
+++ ......++.|.... +.. .+..+.. +....+.++|.|+|.+.++-+.
T Consensus 85 yV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~ 143 (367)
T TIGR02604 85 YVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGN 143 (367)
T ss_pred EEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEeccc
Confidence 454 33443344455321 111 2222211 2345778999999987776663
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=87.56 E-value=28 Score=35.02 Aligned_cols=127 Identities=13% Similarity=0.117 Sum_probs=70.6
Q ss_pred CCceeEEEECCCC----cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCce--eEEEeeCCCCC
Q 037120 96 KPGISALDFDCKG----IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQL--DAVRWNLANQD 169 (489)
Q Consensus 96 ~~~V~~~~fs~~g----~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V--~~v~~~~~~~~ 169 (489)
.+-|..+.|.|-+ ..|.+......|.||.+......... .+.. .+.+..+.++| ..+.|+|...
T Consensus 56 FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K------~l~s---QtcEi~e~~pvLpQGCVWHPk~~- 125 (671)
T PF15390_consen 56 FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNK------LLMS---QTCEIREPFPVLPQGCVWHPKKA- 125 (671)
T ss_pred cceeeeeeecCcccCCCCceEEEeccceEEEEEeccCcccccc------ceee---eeeeccCCcccCCCcccccCCCc-
Confidence 3568999999863 24555666788999988742211110 0000 01111111111 1278999876
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVG 244 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 244 (489)
+|+.-... ..-.+++++..... +-.. ..-.+-|.+.+|.+||+.++++.+..=.-++||-...
T Consensus 126 iL~VLT~~-dvSV~~sV~~d~sr---VkaD--------i~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 126 ILTVLTAR-DVSVLPSVHCDSSR---VKAD--------IKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred eEEEEecC-ceeEeeeeeeCCce---EEEe--------ccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 55444433 24456666443322 1111 1234589999999999966666665555678986553
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=87.29 E-value=22 Score=32.09 Aligned_cols=160 Identities=16% Similarity=0.064 Sum_probs=86.1
Q ss_pred eeEEEECCCCcEEEEEecCC--eEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 99 ISALDFDCKGIYLVSATRSG--CLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg--~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
...+.|..+|.++-+.+.-| .|+.+|+.+++..... ..+..-+ +.+ ++...+ .+..-...
T Consensus 47 TQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~-------~l~~~~F------gEG---it~~~d--~l~qLTWk 108 (264)
T PF05096_consen 47 TQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSV-------PLPPRYF------GEG---ITILGD--KLYQLTWK 108 (264)
T ss_dssp EEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEE-------E-TTT--------EEE---EEEETT--EEEEEESS
T ss_pred CccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEE-------ECCcccc------cee---EEEECC--EEEEEEec
Confidence 67888988898888888766 7899999986544321 0000001 122 344333 36666666
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-ceeecc--
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-SLELST-- 253 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~-- 253 (489)
+ +...+||... ++....+.. . ..=+.++ .++. .|+.+.....++++|..+-+.. .++...
T Consensus 109 ~-~~~f~yd~~t--------l~~~~~~~y--~---~EGWGLt--~dg~-~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g 171 (264)
T PF05096_consen 109 E-GTGFVYDPNT--------LKKIGTFPY--P---GEGWGLT--SDGK-RLIMSDGSSRLYFLDPETFKEVRTIQVTDNG 171 (264)
T ss_dssp S-SEEEEEETTT--------TEEEEEEE---S---SS--EEE--ECSS-CEEEE-SSSEEEEE-TTT-SEEEEEE-EETT
T ss_pred C-CeEEEEcccc--------ceEEEEEec--C---CcceEEE--cCCC-EEEEECCccceEEECCcccceEEEEEEEECC
Confidence 6 9999999932 222222211 2 2335565 4677 5666666789999998765422 111111
Q ss_pred CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCccccee
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPF 294 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~ 294 (489)
..-..++-+.+- +|...+=.=....|...|..+|+....+
T Consensus 172 ~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~i 211 (264)
T PF05096_consen 172 RPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWI 211 (264)
T ss_dssp EE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEE
T ss_pred EECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEE
Confidence 111345667775 4543333333667777888888764433
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=86.85 E-value=14 Score=29.36 Aligned_cols=118 Identities=16% Similarity=0.147 Sum_probs=66.6
Q ss_pred EEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeC----CCCCEEEEEec
Q 037120 101 ALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNL----ANQDEVACAST 176 (489)
Q Consensus 101 ~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~----~~~~~l~s~~~ 176 (489)
.-.|+.....|++++.-|.|.|++......... .......+.--... |++++--+ +....|+.|+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~-------~~~~~i~~LNin~~---italaaG~l~~~~~~D~LliGt- 71 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTG-------RQDSDISFLNINQE---ITALAAGRLKPDDGRDCLLIGT- 71 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCccccccc-------cccCceeEEECCCc---eEEEEEEecCCCCCcCEEEEec-
Confidence 346777888899999999999998876332221 01111111111223 66665433 2345788888
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCC--cEEEEEeCCCcEEEEECCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT--SRLIASDTHGVVNIWDRRV 243 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~s~s~dg~i~iwd~~~ 243 (489)
...+..||+.....- | ..+-.+.|+++.+-.-+. .-++..+....|.-+|..-
T Consensus 72 -~t~llaYDV~~N~d~----------F---yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G 126 (136)
T PF14781_consen 72 -QTSLLAYDVENNSDL----------F---YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEG 126 (136)
T ss_pred -cceEEEEEcccCchh----------h---hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCC
Confidence 569999999433211 1 022335777777643221 1244444467777777654
|
|
| >TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat | Back alignment and domain information |
|---|
Probab=86.75 E-value=2.8 Score=25.31 Aligned_cols=31 Identities=6% Similarity=0.179 Sum_probs=24.5
Q ss_pred ecCCEEEEEeC-CCeEEEEEcCCCcccceeec
Q 037120 266 AENQIIFAAGK-HGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 266 p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~ 296 (489)
|+++.++++.. +++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 57788888765 89999999988877666654
|
This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400). |
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=86.70 E-value=12 Score=36.82 Aligned_cols=151 Identities=16% Similarity=0.219 Sum_probs=81.5
Q ss_pred EeecCCEEEEEeC-CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccce--eeccceeEEEeCCCC
Q 037120 264 LHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSK--IVSQEIHSIDLDPSC 340 (489)
Q Consensus 264 ~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~--~~~~~i~~~~~~p~~ 340 (489)
.+.+..+++..+. ...++-.|+..|+.+..+..|... -+.|.|+...-.-...+.. .....|..++-...|
T Consensus 475 h~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv------vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~g 548 (776)
T COG5167 475 HDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV------VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARG 548 (776)
T ss_pred ecCCcceEEecCCCcccceeeecccceeeeEeecCCcc------eeecCCchhHHhcCccceEEeecccceEEecccccC
Confidence 3445556665554 677888899999999888876533 5667776533211111111 112233333222222
Q ss_pred CeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCC
Q 037120 341 SYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSP 420 (489)
Q Consensus 341 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~ 420 (489)
..+.+- ......++ ..|+.. ..+..-|++.||..|.|++||--..
T Consensus 549 NKi~v~-----------esKdY~tK-----n~Fss~---------------~tTesGyIa~as~kGDirLyDRig~---- 593 (776)
T COG5167 549 NKIKVV-----------ESKDYKTK-----NKFSSG---------------MTTESGYIAAASRKGDIRLYDRIGK---- 593 (776)
T ss_pred Cceeee-----------eehhcccc-----cccccc---------------ccccCceEEEecCCCceeeehhhcc----
Confidence 222211 11111111 011111 1112568888999999999997655
Q ss_pred eeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEE
Q 037120 421 SHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLV 474 (489)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v 474 (489)
+....++ +..+.|..+....+|.+|++.-. ..|.+
T Consensus 594 ------rAKtalP------------~lG~aIk~idvta~Gk~ilaTCk-~yllL 628 (776)
T COG5167 594 ------RAKTALP------------GLGDAIKHIDVTANGKHILATCK-NYLLL 628 (776)
T ss_pred ------hhhhcCc------------ccccceeeeEeecCCcEEEEeec-ceEEE
Confidence 3333444 67788999999999986655444 34444
|
|
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=86.70 E-value=3.1 Score=42.71 Aligned_cols=73 Identities=18% Similarity=0.281 Sum_probs=44.0
Q ss_pred CCCcEEEEEeCCCcEEEEECCC---CCcCcee-ecc--------------------CCCCceeEEEEee----cCCEEEE
Q 037120 222 VNTSRLIASDTHGVVNIWDRRV---GVLPSLE-LST--------------------GSHGTLNSIQLHA----ENQIIFA 273 (489)
Q Consensus 222 ~~~~~l~s~s~dg~i~iwd~~~---~~~~~~~-~~~--------------------~h~~~v~~~~~~p----~~~~l~~ 273 (489)
+.. .|+.+..||.+...+... ....... .+. .....+.++++++ +..++++
T Consensus 157 ~~~-~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 157 SEA-NLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp SSS-BEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred CCC-EEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 444 777778899888877664 1110000 000 0123455667766 7789999
Q ss_pred EeCCCeEEEEEcCCCcccceee
Q 037120 274 AGKHGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 274 ~~~dg~i~lwd~~~~~~~~~~~ 295 (489)
.+.|+++|+||+.+++++.++.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999865553
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] | Back alignment and domain information |
|---|
Probab=86.16 E-value=52 Score=35.26 Aligned_cols=129 Identities=16% Similarity=0.091 Sum_probs=72.8
Q ss_pred cCeeEEEEec------CCCcEEEEEeC----CCcEEEEECCCCCcCceeecc------------------------CCCC
Q 037120 212 KGLSDLAFSA------VNTSRLIASDT----HGVVNIWDRRVGVLPSLELST------------------------GSHG 257 (489)
Q Consensus 212 ~~v~~~~~~~------~~~~~l~s~s~----dg~i~iwd~~~~~~~~~~~~~------------------------~h~~ 257 (489)
..++.+.|-+ ..+..+++.+. ...|.-|.++......-..+. ....
T Consensus 181 ~~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~~~~ 260 (753)
T PF11635_consen 181 YQLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDITLNK 260 (753)
T ss_pred ccceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccccCC
Confidence 4677788876 22234555542 346889988764321110000 1124
Q ss_pred ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCccccee-ecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEe
Q 037120 258 TLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPF-HNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDL 336 (489)
Q Consensus 258 ~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 336 (489)
.|.+++....+..++.+-.||+|.++|-.+.+.+... ...... ..|+++. ..|=.+. ....+..++|
T Consensus 261 ~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~--~~v~s~~--~~Gf~fp--------~~~~~~~vaf 328 (753)
T PF11635_consen 261 RVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPP--NTVTSLF--QAGFHFP--------CIQPPLHVAF 328 (753)
T ss_pred eEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCc--ccccccc--ccccccc--------cCCCCceEEE
Confidence 5677777777888888899999999999988765554 111111 1122220 0110111 0115567889
Q ss_pred CCCCCeEEEEEecCCc
Q 037120 337 DPSCSYQLAFHLDDGW 352 (489)
Q Consensus 337 ~p~~~~~~~~~~~~~w 352 (489)
||++.-++....++..
T Consensus 329 SPt~c~~v~~~~~~~~ 344 (753)
T PF11635_consen 329 SPTMCSLVQIDEDGKT 344 (753)
T ss_pred CcccceEEEEecCCCc
Confidence 9998877776666553
|
It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=86.09 E-value=20 Score=36.89 Aligned_cols=151 Identities=13% Similarity=0.078 Sum_probs=79.4
Q ss_pred CCCCcEEEEEecCC------eEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 105 DCKGIYLVSATRSG------CLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 105 s~~g~~la~g~~dg------~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
+..+.+++.|+.++ .+..||..+..-.... ..+.. .. -.+++...+ .+.++|+.|+
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a-------~m~~~------r~---~~~~~~~~~--~lYv~GG~~~ 343 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLA-------PMPSP------RC---RVGVAVLNG--KLYVVGGYDS 343 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecC-------CCCcc------cc---cccEEEECC--EEEEEccccC
Confidence 44567778888774 5778888774222210 01111 11 223555444 4778887773
Q ss_pred -----CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCc-----EEEEECCCCCcCc
Q 037120 179 -----NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGV-----VNIWDRRVGVLPS 248 (489)
Q Consensus 179 -----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~-----i~iwd~~~~~~~~ 248 (489)
.++..||...........+...+ +...+..+ +|. +.+.|+.||. |-.||.++.++..
T Consensus 344 ~~~~l~~ve~YD~~~~~W~~~a~M~~~R--------~~~~v~~l----~g~-iYavGG~dg~~~l~svE~YDp~~~~W~~ 410 (571)
T KOG4441|consen 344 GSDRLSSVERYDPRTNQWTPVAPMNTKR--------SDFGVAVL----DGK-LYAVGGFDGEKSLNSVECYDPVTNKWTP 410 (571)
T ss_pred CCcccceEEEecCCCCceeccCCccCcc--------ccceeEEE----CCE-EEEEeccccccccccEEEecCCCCcccc
Confidence 46778887544322211111111 11222222 466 8888888864 7789998876543
Q ss_pred eeeccCCCCceeEEEE-eecCCEEEEEeCCC------eEEEEEcCCCc
Q 037120 249 LELSTGSHGTLNSIQL-HAENQIIFAAGKHG------SIYLWDLRGGR 289 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~-~p~~~~l~~~~~dg------~i~lwd~~~~~ 289 (489)
+... ......... .-+|...++||.++ ++..||..+.+
T Consensus 411 va~m---~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 411 VAPM---LTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT 455 (571)
T ss_pred cCCC---CcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence 3211 112222222 23677777777543 56678877654
|
|
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=85.59 E-value=56 Score=35.13 Aligned_cols=185 Identities=11% Similarity=0.085 Sum_probs=103.0
Q ss_pred CCCceeEEEEC---C----CCcEEEEEecCCeEEEEeCCCccccc--CCCCCCCCCcccc--cccccCCCCCCceeEEEe
Q 037120 95 GKPGISALDFD---C----KGIYLVSATRSGCLTVHDFESLYYQC--NGTLPGVGLKEDQ--SKHLLHIPLPQQLDAVRW 163 (489)
Q Consensus 95 ~~~~V~~~~fs---~----~g~~la~g~~dg~i~vwd~~~~~~~~--~~~~~~~g~~~~~--~~~~~h~~~~~~V~~v~~ 163 (489)
....|..|.|. . ..++|++=. ...+.|+...-.+... .... +.+.+. ..+..+...+.....|+|
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~---s~i~~~~l~~i~~~~tgg~~~aDv~F 153 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRP---SRIDPNPLLTISSSDTGGFPHADVAF 153 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCc---cccccceeEEechhhcCCCccceEEe
Confidence 33558889998 2 124555544 5578888743322200 0000 011111 112223335556778999
Q ss_pred eCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeec---CCcccCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 037120 164 NLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVG---SDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWD 240 (489)
Q Consensus 164 ~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd 240 (489)
+|.....|+..... |...|||+..........+.........+ ......-..|.|.++.. .|+.++ ...+.++|
T Consensus 154 nP~~~~q~AiVD~~-G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~-~lLv~~-r~~l~~~d 230 (765)
T PF10214_consen 154 NPWDQRQFAIVDEK-GNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSN-RLLVCN-RSKLMLID 230 (765)
T ss_pred ccCccceEEEEecc-CcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCC-EEEEEc-CCceEEEE
Confidence 99988899999988 99999999221111111111111000000 11124455788988877 677666 46788999
Q ss_pred CCCCCcCceeeccCCCCceeEEEEeec--CCEEEEEeCCCeEEEEEcCCC
Q 037120 241 RRVGVLPSLELSTGSHGTLNSIQLHAE--NQIIFAAGKHGSIYLWDLRGG 288 (489)
Q Consensus 241 ~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~l~~~~~dg~i~lwd~~~~ 288 (489)
+++......-........|..+.-+|. +..++.++ ..|.+.|+...
T Consensus 231 ~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~~ 278 (765)
T PF10214_consen 231 FESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKSS 278 (765)
T ss_pred CCCCCccchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccCC
Confidence 998754221112234567888888887 33333333 57888888873
|
These proteins are found in fungi. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=85.24 E-value=35 Score=32.42 Aligned_cols=152 Identities=13% Similarity=0.130 Sum_probs=77.4
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEE-EeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTV-HDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~v-wd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
.+.++.+.+++.++++|. .|.+.. +|-... ..... .......+.++.+.+++. +++.+.
T Consensus 174 ~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~------------tW~~~-----~~~~~~~l~~i~~~~~g~-~~~vg~- 233 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQT------------AWTPH-----QRNSSRRLQSMGFQPDGN-LWMLAR- 233 (334)
T ss_pred eEEEEEECCCCeEEEEeC-CceEEEEcCCCCC------------eEEEe-----eCCCcccceeeeEcCCCC-EEEEec-
Confidence 388999999987776665 454432 221110 01110 011112278899999875 555555
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc---
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST--- 253 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--- 253 (489)
.|.+++=....+ ......... ...-...+.++.+.+++. . +.++.+|.|.. -...++ ..+...
T Consensus 234 -~G~~~~~s~d~G-----~sW~~~~~~---~~~~~~~l~~v~~~~~~~-~-~~~G~~G~v~~-S~d~G~--tW~~~~~~~ 299 (334)
T PRK13684 234 -GGQIRFNDPDDL-----ESWSKPIIP---EITNGYGYLDLAYRTPGE-I-WAGGGNGTLLV-SKDGGK--TWEKDPVGE 299 (334)
T ss_pred -CCEEEEccCCCC-----CccccccCC---ccccccceeeEEEcCCCC-E-EEEcCCCeEEE-eCCCCC--CCeECCcCC
Confidence 477653211111 111100000 000123578889998776 4 45556776653 333333 222221
Q ss_pred CCCCceeEEEEeecCCEEEEEeCCCeEEEEE
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWD 284 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd 284 (489)
.-....+.+.|..+++. ++.|..|.|--|+
T Consensus 300 ~~~~~~~~~~~~~~~~~-~~~G~~G~il~~~ 329 (334)
T PRK13684 300 EVPSNFYKIVFLDPEKG-FVLGQRGVLLRYV 329 (334)
T ss_pred CCCcceEEEEEeCCCce-EEECCCceEEEec
Confidence 11235777887766655 6667788887765
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=85.01 E-value=40 Score=32.97 Aligned_cols=160 Identities=9% Similarity=0.076 Sum_probs=90.2
Q ss_pred CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEee---CC-CCCEEEEEecCCCEEE
Q 037120 107 KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWN---LA-NQDEVACASTRSNVVS 182 (489)
Q Consensus 107 ~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~---~~-~~~~l~s~~~d~g~i~ 182 (489)
+...|++|+..|.++||+......... .......-..+|..+..- +. ....|+.-. -..+.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~-------------~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLh--P~kl~ 100 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPE-------------DLLLETQLKDPILQVECGKFVSGSEDLQLAVLH--PRKLS 100 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCc-------------cEEEEEecCCcEEEEEeccccCCCCcceEEEec--CCEEE
Confidence 347899999999999999855322221 111111112225556543 32 233555544 48999
Q ss_pred EEEeccCCCC--CceeeeeceeeeeecCCcccCeeEEEEecCC----CcEEEEEeCCCcEEEEECCCCCcCceeeccCCC
Q 037120 183 IYDIGYISDE--PVEVLKTRRSVTVVGSDVQKGLSDLAFSAVN----TSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 183 vwd~~~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~ 256 (489)
||.+....+. ..........+.+.+.. ....+++-|-| ..+++.-+.||.+.+++-+.-. ...+...-
T Consensus 101 vY~v~~~~g~~~~g~~~~L~~~yeh~l~~---~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~---f~~~lp~~ 174 (418)
T PF14727_consen 101 VYSVSLVDGTVEHGNQYQLELIYEHSLQR---TAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA---FSRFLPDF 174 (418)
T ss_pred EEEEEecCCCcccCcEEEEEEEEEEeccc---ceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE---EEEEcCCC
Confidence 9999432221 11112212222222222 33333333322 3588889999999999876532 12222221
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 037120 257 GTLNSIQLHAENQIIFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~ 287 (489)
--...+++.+.-+.+++++.+..|.-|....
T Consensus 175 llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~ 205 (418)
T PF14727_consen 175 LLPGPLCYCPRTDSFVTASSSWTLECYKYQD 205 (418)
T ss_pred CCCcCeEEeecCCEEEEecCceeEEEecHHH
Confidence 2223678999999999999999999887643
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=84.99 E-value=25 Score=30.55 Aligned_cols=50 Identities=16% Similarity=0.220 Sum_probs=34.7
Q ss_pred CEEEEEeCCCeEEEEEcCCCcc--cceeecCCccCCCCeeEEEeCCCCcceeecccc
Q 037120 269 QIIFAAGKHGSIYLWDLRGGRT--SAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQ 323 (489)
Q Consensus 269 ~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~ 323 (489)
+.|+.+.....|.+||+.+..+ +..|..- +. |..+.++..|.+++++...
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~----V~~l~y~~~GDYlvTlE~k 80 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GR----VLQLVYSEAGDYLVTLEEK 80 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hh----eeEEEeccccceEEEEEee
Confidence 5666656677899999984333 5555542 34 8888888888888876533
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.79 E-value=1 Score=46.72 Aligned_cols=130 Identities=9% Similarity=0.140 Sum_probs=75.1
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCC--CceeeeeceeeeeecCCcccCeeEEEEecCCC--cEEEEEeCC
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDE--PVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT--SRLIASDTH 233 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~s~s~d 233 (489)
|..++|.......+. - +-|.+.|||+..-.++ +.-.+.....+ ...+.-|.|+|--. .++..+-.+
T Consensus 135 v~dl~fah~~~pk~~--~-~vg~lfVy~vd~l~G~iq~~l~v~~~~p~-------gs~~~~V~wcp~~~~~~~ic~~~~~ 204 (1283)
T KOG1916|consen 135 VGDLQFAHTKCPKGR--R-LVGELFVYDVDVLQGEIQPQLEVTPITPY-------GSDPQLVSWCPIAVNKVYICYGLKG 204 (1283)
T ss_pred cccccccccCChHHH--H-HhhhhheeehHhhccccccceEEeecCcC-------CCCcceeeecccccccceeeeccCC
Confidence 455777543322333 2 2388999998642222 11222222211 12335566665322 266666788
Q ss_pred CcEEEEECCCCCcCceeeccCCCCceeEE-----------EEeecCCEEEEEeCCCeEEEEEcC-----CCcccceeecC
Q 037120 234 GVVNIWDRRVGVLPSLELSTGSHGTLNSI-----------QLHAENQIIFAAGKHGSIYLWDLR-----GGRTSAPFHNH 297 (489)
Q Consensus 234 g~i~iwd~~~~~~~~~~~~~~h~~~v~~~-----------~~~p~~~~l~~~~~dg~i~lwd~~-----~~~~~~~~~~~ 297 (489)
+.|++....+... ..+.+|...+..+ .++|||..++.++.||.++.|.+. ..+++..++.|
T Consensus 205 ~~i~lL~~~ra~~---~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkph 281 (1283)
T KOG1916|consen 205 GEIRLLNINRALR---SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPH 281 (1283)
T ss_pred CceeEeeechHHH---HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCC
Confidence 8998877665432 3344566554433 368999999999999988877653 44557777777
Q ss_pred Ccc
Q 037120 298 KEV 300 (489)
Q Consensus 298 ~~~ 300 (489)
.+.
T Consensus 282 d~~ 284 (1283)
T KOG1916|consen 282 DKH 284 (1283)
T ss_pred CCC
Confidence 643
|
|
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.70 E-value=0.16 Score=48.67 Aligned_cols=141 Identities=13% Similarity=0.111 Sum_probs=91.3
Q ss_pred EEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEE
Q 037120 102 LDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVV 181 (489)
Q Consensus 102 ~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i 181 (489)
..|-+.+..++.++.+-.+..||-......... . +.. ...++|..++..+++.+... +.+
T Consensus 40 ~~w~~e~~nlavaca~tiv~~YD~agq~~le~n-------------~---tg~---aldm~wDkegdvlavlAek~-~pi 99 (615)
T KOG2247|consen 40 HRWRPEGHNLAVACANTIVIYYDKAGQVILELN-------------P---TGK---ALDMAWDKEGDVLAVLAEKT-GPI 99 (615)
T ss_pred eeEecCCCceehhhhhhHHHhhhhhcceecccC-------------C---chh---HhhhhhccccchhhhhhhcC-CCe
Confidence 356777777999999989999987653222211 0 111 44588888877666666666 899
Q ss_pred EEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeE
Q 037120 182 SIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNS 261 (489)
Q Consensus 182 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~ 261 (489)
.+||++..... .+... ..|+... +.|++..+ .++.+-..|.+.|++..+..... ....|...+++
T Consensus 100 ylwd~n~eytq---qLE~g-------g~~s~sl--l~wsKg~~-el~ig~~~gn~viynhgtsR~ii--v~Gkh~RRgtq 164 (615)
T KOG2247|consen 100 YLWDVNSEYTQ---QLESG-------GTSSKSL--LAWSKGTP-ELVIGNNAGNIVIYNHGTSRRII--VMGKHQRRGTQ 164 (615)
T ss_pred eechhhhhhHH---HHhcc-------CcchHHH--HhhccCCc-cccccccccceEEEeccchhhhh--hhcccccceeE
Confidence 99999543211 11100 1233333 67888888 88888899999999988765321 22238889999
Q ss_pred EEEeecCCEEEEEeCCC
Q 037120 262 IQLHAENQIIFAAGKHG 278 (489)
Q Consensus 262 ~~~~p~~~~l~~~~~dg 278 (489)
+++.+.+.. +.++.|.
T Consensus 165 ~av~lEd~v-il~dcd~ 180 (615)
T KOG2247|consen 165 IAVTLEDYV-ILCDCDN 180 (615)
T ss_pred EEeccccee-eecCcHH
Confidence 999987754 4444443
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=84.56 E-value=31 Score=36.47 Aligned_cols=76 Identities=11% Similarity=0.208 Sum_probs=51.6
Q ss_pred cCeeEEEEecCCCcEEEEEeCCCcEEEEECCC----------CCcC--ceee-------ccCCCCceeEEEEeec---CC
Q 037120 212 KGLSDLAFSAVNTSRLIASDTHGVVNIWDRRV----------GVLP--SLEL-------STGSHGTLNSIQLHAE---NQ 269 (489)
Q Consensus 212 ~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----------~~~~--~~~~-------~~~h~~~v~~~~~~p~---~~ 269 (489)
-.|..|.++|+|. +++-.|..| |.|..+-. ++.. |... ...+...|..+.|+|. +.
T Consensus 85 f~v~~i~~n~~g~-~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNPTGS-LLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECCCCC-EEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 3788999999999 777777554 44443321 1111 1111 1134567889999997 57
Q ss_pred EEEEEeCCCeEEEEEcCCCc
Q 037120 270 IIFAAGKHGSIYLWDLRGGR 289 (489)
Q Consensus 270 ~l~~~~~dg~i~lwd~~~~~ 289 (489)
+|++-.+|+++|+||+...+
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEecCCEEEEEecCCCC
Confidence 88888999999999997644
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=84.51 E-value=22 Score=36.55 Aligned_cols=105 Identities=16% Similarity=0.186 Sum_probs=54.1
Q ss_pred CEEEEEecCC-----CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCc-----EEE
Q 037120 169 DEVACASTRS-----NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGV-----VNI 238 (489)
Q Consensus 169 ~~l~s~~~d~-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~-----i~i 238 (489)
.+.+.|+.+. .++..||...........+...+ .+|. ++.. ++. +++.||.|+. |..
T Consensus 429 ~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R------~~~g-----~a~~-~~~-iYvvGG~~~~~~~~~VE~ 495 (571)
T KOG4441|consen 429 KLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRR------SGFG-----VAVL-NGK-IYVVGGFDGTSALSSVER 495 (571)
T ss_pred EEEEEcCcCCCccccceEEEEcCCCCceeecCCccccc------ccce-----EEEE-CCE-EEEECCccCCCccceEEE
Confidence 4666666441 35677887544333222222222 1111 2222 455 7777887763 778
Q ss_pred EECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCC-----eEEEEEcCCC
Q 037120 239 WDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHG-----SIYLWDLRGG 288 (489)
Q Consensus 239 wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg-----~i~lwd~~~~ 288 (489)
||..+.++..+..+......+-.+.+ ++...++||.|| +|..||..+.
T Consensus 496 ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 496 YDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred EcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCccccceeEEcCCCCC
Confidence 99988765433222222222222222 456666777665 4666666553
|
|
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.31 E-value=7.3 Score=38.24 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=26.4
Q ss_pred cCCCcceeecCC--cEEEEeecCCCcEEEEeccCC
Q 037120 384 LHLRKPSWLSTN--SIYAVGSSSDHGIHLLDFFPG 416 (489)
Q Consensus 384 ~~~~~~~~~~~~--~~~l~sgs~d~~i~vwd~~~~ 416 (489)
+.+++.+|.|+. +..++--+.|+.|||||+...
T Consensus 166 ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~ 200 (741)
T KOG4460|consen 166 LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEP 200 (741)
T ss_pred eeeeeccccCCccCCceEEEEecCcEEEEEecCCc
Confidence 556788999986 555665679999999999866
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=84.25 E-value=40 Score=35.65 Aligned_cols=114 Identities=6% Similarity=-0.075 Sum_probs=62.5
Q ss_pred eeEEEeeCCCCCEEEEEecC---CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC-
Q 037120 158 LDAVRWNLANQDEVACASTR---SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH- 233 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d---~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d- 233 (489)
+..+.|+|++..++++...+ ...|++-|+..+. .+...- .+ .-..++|.++++.++++...+
T Consensus 129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~-----~l~~~i------~~---~~~~~~w~~D~~~~~y~~~~~~ 194 (686)
T PRK10115 129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGN-----WYPELL------DN---VEPSFVWANDSWTFYYVRKHPV 194 (686)
T ss_pred EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCC-----CCCccc------cC---cceEEEEeeCCCEEEEEEecCC
Confidence 77789999998555554333 1357777774321 111000 11 114589999998444444322
Q ss_pred ----CcEEEEECCCCCcCceeeccCCCCcee-EEEEeecCCEEEEEeC---CCeEEEEEc
Q 037120 234 ----GVVNIWDRRVGVLPSLELSTGSHGTLN-SIQLHAENQIIFAAGK---HGSIYLWDL 285 (489)
Q Consensus 234 ----g~i~iwd~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~l~~~~~---dg~i~lwd~ 285 (489)
..|+.+++.++...-...+........ .+..+.++++++..+. ++.+.+|+.
T Consensus 195 ~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 195 TLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred CCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 367888888873222212222222233 3333447887665544 567999995
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=83.97 E-value=19 Score=36.72 Aligned_cols=64 Identities=11% Similarity=0.096 Sum_probs=34.4
Q ss_pred CCCcEEEEEeCC--------CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCC-----CeEEEEEcCCC
Q 037120 222 VNTSRLIASDTH--------GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKH-----GSIYLWDLRGG 288 (489)
Q Consensus 222 ~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~d-----g~i~lwd~~~~ 288 (489)
++. +++.|+.+ ..+.+||..+.++..+............+. -++..++.||.+ +.|.+||..+.
T Consensus 437 ~~~-iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 513 (534)
T PHA03098 437 DGK-IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTN 513 (534)
T ss_pred CCE-EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence 455 66666632 238899998876442221111111112222 266777777653 46788887764
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=83.72 E-value=28 Score=35.42 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=38.6
Q ss_pred CCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeec
Q 037120 233 HGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 233 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
-|.|.-+|+.+++.. .+... ..+...-.+.-.+.+++.+..||.++.+|.++|+.+-.++.
T Consensus 440 ~g~l~AiD~~tGk~~-W~~~~--~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 440 MGSLIAWDPITGKIV-WEHKE--DFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred ceeEEEEeCCCCcee-eEecC--CCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 467888899888632 21211 11111111223556778877799999999999998776654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=83.18 E-value=10 Score=31.95 Aligned_cols=29 Identities=17% Similarity=0.332 Sum_probs=23.2
Q ss_pred ceeEEEeeCCC-----CCEEEEEecCCCEEEEEEe
Q 037120 157 QLDAVRWNLAN-----QDEVACASTRSNVVSIYDI 186 (489)
Q Consensus 157 ~V~~v~~~~~~-----~~~l~s~~~d~g~i~vwd~ 186 (489)
.|.+++|+|.| ..+|++...+ +.|.||.-
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~-~~l~l~~~ 120 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSN-GRLSLYGP 120 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCC-CeEEEEec
Confidence 58899999954 4477777777 99999987
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=81.80 E-value=28 Score=30.25 Aligned_cols=104 Identities=15% Similarity=0.124 Sum_probs=57.9
Q ss_pred CEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC---C---cEEEE---
Q 037120 169 DEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH---G---VVNIW--- 239 (489)
Q Consensus 169 ~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d---g---~i~iw--- 239 (489)
.++++++ ++.|.+|++....... +.... --+.|..+.++..|+ +++|-=.+ . .+|+|
T Consensus 30 ~Lfva~~--g~~Vev~~l~~~~~~~---~~~F~--------Tv~~V~~l~y~~~GD-YlvTlE~k~~~~~~~fvR~Y~NW 95 (215)
T PF14761_consen 30 ALFVAAS--GCKVEVYDLEQEECPL---LCTFS--------TVGRVLQLVYSEAGD-YLVTLEEKNKRSPVDFVRAYFNW 95 (215)
T ss_pred eEEEEcC--CCEEEEEEcccCCCce---eEEEc--------chhheeEEEeccccc-eEEEEEeecCCccceEEEEEEEh
Confidence 3555555 4899999995222221 11111 114889999999999 88876532 2 55664
Q ss_pred ECCC-CCcCceeeccCC---------------------CCceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 037120 240 DRRV-GVLPSLELSTGS---------------------HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 240 d~~~-~~~~~~~~~~~h---------------------~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~ 287 (489)
.... .+.+..-.+.+| +..+.|++-.|-.-.|+.|+ ++++.||-+..
T Consensus 96 r~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~ 164 (215)
T PF14761_consen 96 RSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKY 164 (215)
T ss_pred hhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEE
Confidence 3331 112211012222 33566787777544455554 55888988764
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.69 E-value=33 Score=33.37 Aligned_cols=117 Identities=11% Similarity=0.174 Sum_probs=69.0
Q ss_pred ceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcE
Q 037120 157 QLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVV 236 (489)
Q Consensus 157 ~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i 236 (489)
+|.++.|++|++ .++.--.+ ++|.+++.... ++ .+..... ...-+..|....|.... -++-.+ +.-+
T Consensus 68 ~I~SIkFSlDnk-ilAVQR~~-~~v~f~nf~~d--~~--~l~~~~~----ck~k~~~IlGF~W~~s~--e~A~i~-~~G~ 134 (657)
T KOG2377|consen 68 EIKSIKFSLDNK-ILAVQRTS-KTVDFCNFIPD--NS--QLEYTQE----CKTKNANILGFCWTSST--EIAFIT-DQGI 134 (657)
T ss_pred ceeEEEeccCcc-eEEEEecC-ceEEEEecCCC--ch--hhHHHHH----hccCcceeEEEEEecCe--eEEEEe-cCCe
Confidence 499999999986 66666666 99999987221 11 1110111 12234468888888664 355555 3345
Q ss_pred EEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC--CCeEEEEEcCC
Q 037120 237 NIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK--HGSIYLWDLRG 287 (489)
Q Consensus 237 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~--dg~i~lwd~~~ 287 (489)
-+|.....+ ..++..+.|+-.|+=..|.++-+.++.++. .+++.=+.+++
T Consensus 135 e~y~v~pek-rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 135 EFYQVLPEK-RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred EEEEEchhh-hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 666554422 234455577777888888888776555544 33443344443
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=81.16 E-value=57 Score=31.83 Aligned_cols=111 Identities=12% Similarity=0.125 Sum_probs=59.4
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
+.++.|.+++. +++++. .|.+..=+- .+.......+..... ..-...+.++.|.+++. ++.++.+|.+.
T Consensus 283 l~~v~~~~dg~-l~l~g~--~G~l~~S~d-~G~~~~~~~f~~~~~-----~~~~~~l~~v~~~~d~~--~~a~G~~G~v~ 351 (398)
T PLN00033 283 IQNMGWRADGG-LWLLTR--GGGLYVSKG-TGLTEEDFDFEEADI-----KSRGFGILDVGYRSKKE--AWAAGGSGILL 351 (398)
T ss_pred eeeeeEcCCCC-EEEEeC--CceEEEecC-CCCcccccceeeccc-----CCCCcceEEEEEcCCCc--EEEEECCCcEE
Confidence 78899998875 555554 366544322 111000001111110 10113588899998776 55566678776
Q ss_pred EEECCCCCcCceeecc---CCCCceeEEEEeecCCEEEEEeCCCeEEEE
Q 037120 238 IWDRRVGVLPSLELST---GSHGTLNSIQLHAENQIIFAAGKHGSIYLW 283 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~---~h~~~v~~~~~~p~~~~l~~~~~dg~i~lw 283 (489)
... ..++ ..+... .-...++.+.|.++++- ++.|.+|.|--|
T Consensus 352 ~s~-D~G~--tW~~~~~~~~~~~~ly~v~f~~~~~g-~~~G~~G~il~~ 396 (398)
T PLN00033 352 RST-DGGK--SWKRDKGADNIAANLYSVKFFDDKKG-FVLGNDGVLLRY 396 (398)
T ss_pred EeC-CCCc--ceeEccccCCCCcceeEEEEcCCCce-EEEeCCcEEEEe
Confidence 664 2233 222211 22356788998776554 566678877654
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=81.00 E-value=31 Score=38.17 Aligned_cols=117 Identities=14% Similarity=0.263 Sum_probs=66.5
Q ss_pred eeCCCCCEEEEEecCCCEEEEEEeccCCCCCce-eeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE--EE
Q 037120 163 WNLANQDEVACASTRSNVVSIYDIGYISDEPVE-VLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN--IW 239 (489)
Q Consensus 163 ~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~--iw 239 (489)
|.|.=+++|+.+. --.|.++-+......... .+... +.. .-....|+++....+|. .|++ |.||.|+ +|
T Consensus 135 Fv~~IqhlLvvaT--~~ei~ilgV~~~~~~~~~~~f~~~--~~i--~~dg~~V~~I~~t~nGR-IF~~-G~dg~lyEl~Y 206 (1311)
T KOG1900|consen 135 FVPEIQHLLVVAT--PVEIVILGVSFDEFTGELSIFNTS--FKI--SVDGVSVNCITYTENGR-IFFA-GRDGNLYELVY 206 (1311)
T ss_pred chhhhheeEEecc--cceEEEEEEEeccccCcccccccc--eee--ecCCceEEEEEeccCCc-EEEe-ecCCCEEEEEE
Confidence 3444455666666 357888877533221101 11111 111 11234688888777777 5554 4566433 22
Q ss_pred ECCCC------Cc------------C-ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 037120 240 DRRVG------VL------------P-SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 240 d~~~~------~~------------~-~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~ 287 (489)
....+ .+ | ..+....+.++|..++.+..-..+++-+..|+|.+||+..
T Consensus 207 q~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 207 QAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 22211 00 1 1112225567999999998888899999999999999987
|
|
| >PF12768 Rax2: Cortical protein marker for cell polarity | Back alignment and domain information |
|---|
Probab=80.97 E-value=40 Score=30.97 Aligned_cols=118 Identities=13% Similarity=0.214 Sum_probs=65.1
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe------CCCcEEEEECCCCCcCceee-
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD------THGVVNIWDRRVGVLPSLEL- 251 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~- 251 (489)
..|++||.... .+.....+-.+.|+++.|..+.+ +++.|. ....+..||+.+.....+..
T Consensus 16 ~~lC~yd~~~~------------qW~~~g~~i~G~V~~l~~~~~~~-Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~ 82 (281)
T PF12768_consen 16 PGLCLYDTDNS------------QWSSPGNGISGTVTDLQWASNNQ-LLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGG 82 (281)
T ss_pred CEEEEEECCCC------------EeecCCCCceEEEEEEEEecCCE-EEEEEeeEECCCCceeEEEEecCCCeeeecCCc
Confidence 57999998322 12222234556899999996665 777665 34568889998765321211
Q ss_pred c-cCCCCceeEEEEee-cCCEEE-EEe-C--CCeEEEEEcCCCcccce-eecCCccCCCCeeEEEeCCC
Q 037120 252 S-TGSHGTLNSIQLHA-ENQIIF-AAG-K--HGSIYLWDLRGGRTSAP-FHNHKEVCHLPLTSLKLASM 313 (489)
Q Consensus 252 ~-~~h~~~v~~~~~~p-~~~~l~-~~~-~--dg~i~lwd~~~~~~~~~-~~~~~~~~~~~v~~l~~~~~ 313 (489)
. ..-.++|..+.+.. ++..+. +|. . +..|..||=.+...+.. ....... |..+.+-|-
T Consensus 83 ~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~----I~~l~~~~l 147 (281)
T PF12768_consen 83 SSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTT----IRGLQVLPL 147 (281)
T ss_pred ccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCE----EEEEEEEec
Confidence 0 11236788887743 333344 443 2 44566776555444333 2221223 666665543
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=80.72 E-value=59 Score=31.75 Aligned_cols=33 Identities=12% Similarity=0.381 Sum_probs=22.7
Q ss_pred CceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCc
Q 037120 257 GTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGR 289 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~ 289 (489)
.-|+.|.+|.|.++|+..+. +|.|+.||+....
T Consensus 312 ~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~ 345 (461)
T PF05694_consen 312 PLITDILISLDDRFLYVSNWLHGDVRQYDISDPF 345 (461)
T ss_dssp -----EEE-TTS-EEEEEETTTTEEEEEE-SSTT
T ss_pred CceEeEEEccCCCEEEEEcccCCcEEEEecCCCC
Confidence 34789999999999999988 9999999998754
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=80.06 E-value=6 Score=23.48 Aligned_cols=28 Identities=18% Similarity=0.338 Sum_probs=20.1
Q ss_pred CCceeEEEEeecCCEEEEEeC-C--CeEEEE
Q 037120 256 HGTLNSIQLHAENQIIFAAGK-H--GSIYLW 283 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~~-d--g~i~lw 283 (489)
...-....|+|||+.|+-++. + |...||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 445678899999998887766 5 666665
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 8e-10
Identities = 81/509 (15%), Positives = 157/509 (30%), Gaps = 141/509 (27%)
Query: 61 YHVDRVLCPTHEGIVNS--QRSRAGDVA---MIDHRRSFGKPGISAL--------DFDCK 107
Y+V R+ + + + + A +V ++ GK + + CK
Sbjct: 129 YNVSRL--QPYLKLRQALLELRPAKNVLIDGVL----GSGK---TWVALDVCLSYKVQCK 179
Query: 108 ---GIYLVSATRSGCLTVHD----FESLYYQ------------CNGTLPGVGLKEDQSKH 148
I+ ++ C + + L YQ N L ++ + +
Sbjct: 180 MDFKIFWLNLKN--CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL 237
Query: 149 LLHIPLPQQL---DAVRWN--LANQDEVAC---ASTR----SNVVSIYDIGYIS-DEPVE 195
L P L V N N ++C +TR ++ +S +IS D
Sbjct: 238 LKSKPYENCLLVLLNV-QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 196 VLKTRRSVTVVGSDVQKGLSDLAFSAVNTS----RLIASDTHGVVNIWD--RRVGVLPSL 249
L +++ + DL + T+ +IA + WD + V
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN---CD 353
Query: 250 ELSTGSHGTLNSIQLHAENQ------IIFAAGKHGSI------YLWDLRGGRTSAPFHNH 297
+L+T +LN ++ AE + +F H I +W F
Sbjct: 354 KLTTIIESSLNVLE-PAEYRKMFDRLSVFPPSAH--IPTILLSLIW----------FDVI 400
Query: 298 KEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLD--PSCSYQLAFHLDDGWSGV 355
K + + L S++EK Q K + I SI L+ + A H +
Sbjct: 401 KSDVMVVVNKLHKYSLVEK------QPKESTISIPSIYLELKVKLENEYALH-----RSI 449
Query: 356 LDVYNSRVSHV--HCPPPAW-----------LSDSNNSADQLHLRKP----SWL------ 392
+D YN + PP L + + R +L
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH 509
Query: 393 STNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVT 452
+ + A GS + + L F+ + Y + ++ + F+P E
Sbjct: 510 DSTAWNASGSILNT-LQQLKFYKPYICDNDPKYERLVNAILD---------FLPKIE--E 557
Query: 453 ACVTHPLNNTIVAG--TKNSSLLVVSQKQ 479
+ + + ++ ++ + KQ
Sbjct: 558 NLICSKYTDLLRIALMAEDEAIFEEAHKQ 586
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 9e-07
Identities = 33/191 (17%), Positives = 75/191 (39%), Gaps = 9/191 (4%)
Query: 111 LVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170
L+++ + S Y G G G + + + I +++ R+ N
Sbjct: 84 LIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACV 143
Query: 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIAS 230
+A + S+V+ ++D +P + + + + G QK L+++ L+++
Sbjct: 144 IATKTPSSDVL-VFDYTKHPSKPEPSGECQPDLRLRGH--QKEGYGLSWNPNLNGYLLSA 200
Query: 231 DTHGVVNIWD-----RRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKH-GSIYLWD 284
+ +WD + V+ + + TG + + H ++ +F + + +WD
Sbjct: 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWD 260
Query: 285 LRGGRTSAPFH 295
R TS P H
Sbjct: 261 TRNNNTSKPSH 271
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B Length = 430 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 4e-04
Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 216 DLAFSAVNTSRLIAS---DTHGVVNIWDRRVGVLPSLELSTGSH-GTLNSIQLHAENQII 271
D+A+ ++ S L S D + IWD R + +H +N + + ++ I
Sbjct: 236 DVAWHLLHES-LFGSVADD--QKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFI 292
Query: 272 FA-AGKHGSIYLWDLRGGRTS-APFHNHKE 299
A ++ LWDLR + F +HK+
Sbjct: 293 LATGSADKTVALWDLRNLKLKLHSFESHKD 322
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} Length = 524 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 3e-06
Identities = 37/326 (11%), Positives = 95/326 (29%), Gaps = 44/326 (13%)
Query: 111 LVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170
L ++ G + + N T V ++ L + ++ +
Sbjct: 228 LSFVSQEGTINFLEI-----IDNATDVHVFKMCEKPSLTLSLADSLI---TTFDFLSPTT 279
Query: 171 VACASTRSNVVSIYDIGYISDEPVEVLKT-RRSVTVVGSDVQKGLSDLAFSAVNTSRLIA 229
V C + V+ +D+ + P + + V + A+S + +
Sbjct: 280 VVCGFK-NGFVAEFDLTD-PEVPSFYDQVHDSYILSVST---------AYSDFEDTVVST 328
Query: 230 SDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGR 289
G I++ + +S L + + + S+ R
Sbjct: 329 VAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF 388
Query: 290 TSAPFHNHKEVCHLPLTSLKLASMLEKI------GTLK----AQSKIVSQEIHSIDLDPS 339
P + + +T++ ++ + + G+L A+ + + S
Sbjct: 389 AVHPLVSRET----TITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSL 444
Query: 340 CSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSW---LSTNS 396
++ + + D + Y V+ A + +++ W +
Sbjct: 445 RLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHG-----INITCTKWNETSAGGK 499
Query: 397 IYAVGSSSDHGIHLLDFFPGSSSPSH 422
YA +S+ G+ L++ H
Sbjct: 500 CYAFSNSA--GLLTLEYLSLEHHHHH 523
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 1e-04
Identities = 23/174 (13%), Positives = 57/174 (32%), Gaps = 15/174 (8%)
Query: 134 GTLPGVGLKEDQSKHLLHIPLPQ-QLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDE 192
G L LK+ ++ + P P+ + N ++I D +++
Sbjct: 58 GALHFTQLKDSKTITTITTPNPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSK--TNK 115
Query: 193 PVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELS 252
+ ++ + ++ + VNT I +D G + + S
Sbjct: 116 VLREIEVDSANEIIYMYG--------HNEVNTEYFIWADNRGTIGFQSYEDDSQYIV-HS 166
Query: 253 TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGR---TSAPFHNHKEVCHL 303
S +S LH ++ ++ G + +++L + P ++ +
Sbjct: 167 AKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEV 220
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 2e-04
Identities = 14/163 (8%), Positives = 43/163 (26%), Gaps = 15/163 (9%)
Query: 141 LKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTR 200
K ++ + + ++ + + E + + +
Sbjct: 111 SKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSY-----------EDD 159
Query: 201 RSVTVVGSDVQKGLSDLAFSAVNTSRLIAS-DTHGVVNIWDRRVGVLPSLELSTGSHGTL 259
V + S S L+A G++++++ S +
Sbjct: 160 SQYIVHSAKSDVEYSSGVLHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKI 217
Query: 260 NSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCH 302
++ A+N ++ +DLR + + +
Sbjct: 218 KEVKF-ADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEF 259
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* Length = 383 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 1/84 (1%)
Query: 215 SDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAA 274
+ + F+ NT++L S G + D V+ + + + Q++
Sbjct: 122 TGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATG 181
Query: 275 GKHGSIYLWDLRGGRTSAPFHNHK 298
G + L L G HK
Sbjct: 182 DSTGRLLLLGLDGHEIFK-EKLHK 204
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} Length = 437 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 4e-04
Identities = 29/206 (14%), Positives = 72/206 (34%), Gaps = 22/206 (10%)
Query: 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQ 157
++ + +++ G + + +YQ + + + + +L + +
Sbjct: 113 TVTQITMIPNFDAFAVSSKDG--QIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEY 170
Query: 158 L-DAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGL-S 215
+ + + + S V+ I+D ++T + ++ + + G S
Sbjct: 171 AVRMRAFVNEEKSLLVALTNLSRVI-IFD-----------IRTLERLQIIENSPRHGAVS 218
Query: 216 DLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHA---ENQIIF 272
+ LI T G+++IWD R + S G H + +++ +N +I
Sbjct: 219 SICIDE-ECCVLILGTTRGIIDIWDIRFN-VLIRSWSFGDHAPITHVEVCQFYGKNSVIV 276
Query: 273 AAG-KHGSIYLWDLRGGRTSAPFHNH 297
G + +W+ G F N
Sbjct: 277 VGGSSKTFLTIWNFVKGHCQYAFINS 302
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 5e-04
Identities = 27/234 (11%), Positives = 68/234 (29%), Gaps = 39/234 (16%)
Query: 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPL 154
+ I + F KGIYLV + V S + T+
Sbjct: 57 DRSAIKEMRF-VKGIYLVVINAKDTVYVLSLYS--QKVLTTVFV---------------- 97
Query: 155 PQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGL 214
P ++ ++ + + + ++ + +YDI ++ ++S + + +
Sbjct: 98 PGKITSIDTDASL--DWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLS-PI 154
Query: 215 SDLAFSAVNTSRLIASDTHGVVNIWDRR----------------VGVLPSLELSTGSHGT 258
+ ++ + ++ S + + + G S + +
Sbjct: 155 VSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPK 213
Query: 259 LNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLAS 312
+ H + I + S+ WD G + ++P S
Sbjct: 214 VIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDS 267
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 5e-04
Identities = 43/393 (10%), Positives = 106/393 (26%), Gaps = 48/393 (12%)
Query: 94 FGKPG-ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHI 152
+G A FD L AT +G + ++ + + L K + +
Sbjct: 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQ--VEVVIKLED----RSAIKEMRFV 67
Query: 153 PLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQK 212
+ V + L +++ +T V +
Sbjct: 68 K---------------GIYLVVINAKDTVYVLS-----------LYSQKVLTTVFVPGK- 100
Query: 213 GLSDLAFSAVNTSRLIASDTHGVVNIWD--------RRVGVLPSLELSTGSH-GTLNSIQ 263
++ + A LI +G + ++D ++ L + + SIQ
Sbjct: 101 -ITSIDTDASLDWMLIGLQ-NGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQ 158
Query: 264 LHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQ 323
+ + + L F + + +++
Sbjct: 159 WNPRDIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSL 218
Query: 324 SKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQ 383
S I +I D S V+ + ++ S + +
Sbjct: 219 YHPNSLHIITIHED--NSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISK 276
Query: 384 LHLR-KPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKEN 442
++ + + T+ + + S S L +P + + + + +
Sbjct: 277 VYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKI 336
Query: 443 RFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVV 475
+P + + + P + AG N L+++
Sbjct: 337 FPLPTNVPIVNILPIPRQSPYFAGCHNPGLILL 369
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 489 | |||
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.98 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.98 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.98 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.98 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.98 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.98 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.98 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.98 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.97 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.97 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.97 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.97 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.97 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.97 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.97 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.97 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.97 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.97 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.97 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.97 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.97 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.97 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.96 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.96 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.96 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.96 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.96 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.95 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.95 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.95 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.95 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.95 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.95 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.95 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.95 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.95 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.94 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.94 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.94 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.94 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.94 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.94 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.94 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.94 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.94 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.93 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.93 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.93 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.93 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.93 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.93 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.93 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.93 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.92 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.92 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.92 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.9 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.9 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.89 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.89 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.88 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.87 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.87 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.86 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.86 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.85 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.84 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.84 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.83 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.82 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.82 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.81 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.81 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.81 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.81 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.8 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.8 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.79 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.79 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.78 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.77 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.77 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.76 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.76 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.73 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.73 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.71 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.71 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.7 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.7 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.69 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.68 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.64 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.61 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.61 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.59 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.58 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.57 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.51 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.5 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.5 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.49 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.47 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.44 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.43 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.43 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.42 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.41 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.4 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.36 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.36 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.34 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.34 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.33 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.33 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.29 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.27 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.26 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.25 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.25 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.24 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.23 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.21 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.21 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.2 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.18 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.16 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.14 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.14 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.12 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.12 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.08 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.08 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.06 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.04 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.04 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.0 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.95 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.92 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.9 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.87 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.86 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.85 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.8 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.73 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.73 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.7 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.69 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.6 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.59 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.56 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.56 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.46 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.45 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.42 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.4 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.39 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.38 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.35 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.35 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.31 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.29 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.28 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.27 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.25 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.19 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.05 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.04 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 97.99 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.99 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 97.97 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.97 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.95 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.92 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.9 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.89 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.89 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.86 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.81 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.77 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.73 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.7 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.69 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.58 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 97.55 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.53 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.45 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.37 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.35 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.34 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 97.33 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.31 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.31 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.3 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.22 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.2 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.15 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.13 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.1 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.08 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.04 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.04 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.03 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 97.02 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.96 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.89 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.89 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.86 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.85 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 96.82 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 96.73 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 96.61 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 96.59 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.58 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.52 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.33 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.3 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 96.27 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 96.26 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 96.25 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 96.24 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 96.17 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.1 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 96.05 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 95.81 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 95.79 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 95.52 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 95.5 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 95.3 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 95.27 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 95.09 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 95.01 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 94.9 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 94.87 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 94.59 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 94.12 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 94.0 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 93.96 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 93.78 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 93.76 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 93.41 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 93.34 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 93.16 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 93.06 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 92.76 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 92.73 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 92.52 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 92.43 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 92.03 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 91.62 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 90.75 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 89.6 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 89.22 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 88.62 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 88.55 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 87.57 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 87.54 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 87.16 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 86.15 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 85.46 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 85.37 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 85.29 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 84.48 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 83.4 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 82.48 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 80.49 |
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-40 Score=324.53 Aligned_cols=306 Identities=13% Similarity=0.187 Sum_probs=235.3
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|...|++++|+|++.+||+|+.||+|+|||+.+..... .+.+|... |.+++|+|++. +|
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~--------------~l~~h~~~---V~~v~~~~~~~-~l 165 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER--------------TLKGHTDS---VQDISFDHSGK-LL 165 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE--------------EECCCSSC---EEEEEECTTSS-EE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE--------------EEeccCCc---EEEEEEcCCCC-EE
Confidence 45677889999999999999999999999999998844332 23456666 99999999985 88
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++|+.| ++|++||+... . ...++.+|...|.+++|+|++. +|++|+.|++|++||++++. ++..
T Consensus 166 ~sgs~D-~~i~iwd~~~~-----~-------~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~--~~~~ 229 (410)
T 1vyh_C 166 ASCSAD-MTIKLWDFQGF-----E-------CIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGY--CVKT 229 (410)
T ss_dssp EEEETT-SCCCEEETTSS-----C-------EEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCC--EEEE
T ss_pred EEEeCC-CeEEEEeCCCC-----c-------eeEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCc--EEEE
Confidence 889888 99999999322 1 2233478999999999999998 99999999999999999887 7777
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
+.+|...|.+++|+|++.++++++.|++|++||++++++...+..|... |.+++|+|++.+........ .
T Consensus 230 ~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~----v~~~~~~~~~~~~~~~~~~~------~ 299 (410)
T 1vyh_C 230 FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV----VECISWAPESSYSSISEATG------S 299 (410)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC----EEEEEECCSCGGGGGGGCCS------C
T ss_pred EeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCce----EEEEEEcCcccccchhhhcc------c
Confidence 8899999999999999999999999999999999999988899999877 99999999876542111000 0
Q ss_pred eEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEE
Q 037120 332 HSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLL 411 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vw 411 (489)
......+.+.++++++.|+. ..++++..+........ . ...+..++|+|+ +.++++|+.|+.|+||
T Consensus 300 ~~~~~~~~g~~l~sgs~D~~-i~iwd~~~~~~~~~~~~------h------~~~v~~v~~~~~-g~~l~s~s~D~~i~vw 365 (410)
T 1vyh_C 300 ETKKSGKPGPFLLSGSRDKT-IKMWDVSTGMCLMTLVG------H------DNWVRGVLFHSG-GKFILSCADDKTLRVW 365 (410)
T ss_dssp C-------CCEEEEEETTSE-EEEEETTTTEEEEEEEC------C------SSCEEEEEECSS-SSCEEEEETTTEEEEE
T ss_pred cccccCCCCCEEEEEeCCCe-EEEEECCCCceEEEEEC------C------CCcEEEEEEcCC-CCEEEEEeCCCeEEEE
Confidence 11122334666666665554 23444433332221110 0 011223455554 5678889999999999
Q ss_pred eccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 412 DFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 412 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
|+.++ +.+..+. +|.+.|++++|+|++++||+|+.||+|+||..
T Consensus 366 d~~~~----------~~~~~~~------------~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 366 DYKNK----------RCMKTLN------------AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CCTTS----------CCCEEEE------------CCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred ECCCC----------ceEEEEc------------CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 99888 7777777 99999999999999999999999999999963
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-39 Score=309.59 Aligned_cols=298 Identities=15% Similarity=0.148 Sum_probs=210.0
Q ss_pred ccCCCceeEEEECCCCcEEEEEec------CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC
Q 037120 93 SFGKPGISALDFDCKGIYLVSATR------SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA 166 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~~la~g~~------dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~ 166 (489)
..|+..|++++|+|||++||+|+. |+.|++|+..+...... .......|... |.+++|+|+
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~----------~~~~~~~~~~~---V~~~~~s~d 105 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES----------LCTAGVQTEAG---VTDVAWVSE 105 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG----------GCSEEEECSSC---EEEEEEETT
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee----------EecccCCCCCC---EEEEEEcCC
Confidence 446677999999999999999997 78899998876432221 11112345555 999999998
Q ss_pred CCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCc
Q 037120 167 NQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVL 246 (489)
Q Consensus 167 ~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 246 (489)
+ .+++++.| |+|+|||+....... .. . ....+|...|++++|+|+++ +|++++.|+.|++||+++++
T Consensus 106 ~--~~l~~s~d-g~v~lWd~~~~~~~~--~~--~----~~~~~h~~~V~~v~~spdg~-~l~sgs~dg~v~iwd~~~~~- 172 (357)
T 4g56_B 106 K--GILVASDS-GAVELWEILEKESLL--VN--K----FAKYEHDDIVKTLSVFSDGT-QAVSGGKDFSVKVWDLSQKA- 172 (357)
T ss_dssp T--EEEEEETT-SCEEEC--------C--CC--C----EEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTTE-
T ss_pred C--CEEEEECC-CEEEEeeccccceeE--EE--e----eccCCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCc-
Confidence 6 34556666 999999995432211 10 1 11267999999999999999 99999999999999999876
Q ss_pred CceeeccCCCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccce
Q 037120 247 PSLELSTGSHGTLNSIQLHAENQ-IIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSK 325 (489)
Q Consensus 247 ~~~~~~~~h~~~v~~~~~~p~~~-~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~ 325 (489)
++..+.+|...|++++|+|++. ++++++.||+|++||+++++.+..+..+... ..+++++|+|++.
T Consensus 173 -~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~--~~v~~v~~sp~~~---------- 239 (357)
T 4g56_B 173 -VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASD--TIPTSVTWHPEKD---------- 239 (357)
T ss_dssp -EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCC--SCEEEEEECTTST----------
T ss_pred -EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecccc--ccccchhhhhccc----------
Confidence 6667789999999999999886 6788888999999999998876555432211 2266666666543
Q ss_pred eeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCC
Q 037120 326 IVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSD 405 (489)
Q Consensus 326 ~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d 405 (489)
.+++.+..++...++++..+........ . ...+..++|+|+++.+|++|+.|
T Consensus 240 ----------------~~la~g~~d~~i~~wd~~~~~~~~~~~~------~------~~~v~~l~~sp~~~~~lasgs~D 291 (357)
T 4g56_B 240 ----------------DTFACGDETGNVSLVNIKNPDSAQTSAV------H------SQNITGLAYSYHSSPFLASISED 291 (357)
T ss_dssp ----------------TEEEEEESSSCEEEEESSCGGGCEEECC------C------SSCEEEEEECSSSSCCEEEEETT
T ss_pred ----------------ceEEEeecccceeEEECCCCcEeEEEec------c------ceeEEEEEEcCCCCCEEEEEeCC
Confidence 2222222222223444444333221111 0 01234568888888999999999
Q ss_pred CcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeC-CCCeEEeccCcceeEEEecccc
Q 037120 406 HGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHP-LNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 406 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p-~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
++|+|||+.++ +.+.. . +|.+.|++++|+| ++.+|||||.||+|++|....+
T Consensus 292 ~~i~iwd~~~~----------~~~~~-~------------~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 292 CTVAVLDADFS----------EVFRD-L------------SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp SCEEEECTTSC----------EEEEE-C------------CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred CEEEEEECCCC----------cEeEE-C------------CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999888 55543 3 6999999999999 6789999999999999986543
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-39 Score=307.03 Aligned_cols=306 Identities=12% Similarity=0.121 Sum_probs=208.3
Q ss_pred CCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCccccc-ccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQS-KHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~-~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
+...|.+++|+|||++|++++ |+++++||........... +...... ....|... |.+++|+|++ .+++
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~----~~~~~~~~~~~~~~~~---v~~~~~s~d~--~l~~ 98 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCA----APNEGFCSAGVQTEAG---VADLTWVGER--GILV 98 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGG----TTCGGGCSEEEEESSC---EEEEEEETTT--EEEE
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccc----cCCcceeeeeeccCCC---EEEEEEeCCC--eEEE
Confidence 445699999999999999887 7788888743211100000 0000000 01112333 9999999985 6778
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST 253 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 253 (489)
++.| |+|+|||+..+... ..+ ...+.+|...|++++|+|+++ +|++|+.|++|++||+++++ ++..+.
T Consensus 99 ~s~d-g~v~lWd~~~~~~~--~~~------~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~~--~~~~~~ 166 (344)
T 4gqb_B 99 ASDS-GAVELWELDENETL--IVS------KFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQQV--VLSSYR 166 (344)
T ss_dssp EETT-SEEEEEEECTTSSC--EEE------EEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTE--EEEEEC
T ss_pred EECC-CEEEEEeccCCCce--eEe------eccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCc--EEEEEc
Confidence 8877 99999999544211 111 112368999999999999999 99999999999999999876 777888
Q ss_pred CCCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeecccee
Q 037120 254 GSHGTLNSIQLHAENQ-IIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIH 332 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~-~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~ 332 (489)
+|...|++++|+|++. ++++++.|++|++||+++++.+..+..+... ..+++++|+|++.
T Consensus 167 ~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~p~~~----------------- 227 (344)
T 4gqb_B 167 AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPG--YLPTSLAWHPQQS----------------- 227 (344)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----C--CCEEEEEECSSCT-----------------
T ss_pred CcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceee--ccceeeeecCCCC-----------------
Confidence 9999999999999986 6778889999999999998876666432211 2266666666442
Q ss_pred EEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEe
Q 037120 333 SIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLD 412 (489)
Q Consensus 333 ~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd 412 (489)
.+++.+..++-..++++..+....... .. ...+..++|+|++..++++|+.|++|+|||
T Consensus 228 ---------~~l~sg~~dg~v~~wd~~~~~~~~~~~------~h------~~~v~~v~fsp~g~~~lasgs~D~~i~vwd 286 (344)
T 4gqb_B 228 ---------EVFVFGDENGTVSLVDTKSTSCVLSSA------VH------SQCVTGLVFSPHSVPFLASLSEDCSLAVLD 286 (344)
T ss_dssp ---------TEEEEEETTSEEEEEESCC--CCEEEE------CC------SSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred ---------cceEEeccCCcEEEEECCCCcEEEEEc------CC------CCCEEEEEEccCCCeEEEEEeCCCeEEEEE
Confidence 222222222222333333322211110 00 012344678888888999999999999999
Q ss_pred ccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCC-eEEeccCcceeEEEeccccccccc
Q 037120 413 FFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN-TIVAGTKNSSLLVVSQKQQCTSDS 485 (489)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~-~i~sgs~dg~i~v~~~~~~~~~~~ 485 (489)
+.++ +.+ .+. +|.+.|++++|||++. +|++||.||+|++|....+.+..+
T Consensus 287 ~~~~----------~~~-~~~------------~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~~p 337 (344)
T 4gqb_B 287 SSLS----------ELF-RSQ------------AHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLPAP 337 (344)
T ss_dssp TTCC----------EEE-EEC------------CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC------
T ss_pred CCCC----------cEE-EEc------------CCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCCCC
Confidence 9887 543 345 8999999999999986 678999999999999887766544
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-38 Score=303.69 Aligned_cols=291 Identities=17% Similarity=0.193 Sum_probs=222.5
Q ss_pred ccccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 91 RRSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
.+..|...|.+++|+|+|++|++|+.||+|+|||+.+..... .+..|... |.+++|+|++. +
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~--------------~~~~~~~~---v~~~~~s~~~~-~ 111 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH--------------AIPLRSSW---VMTCAYAPSGN-Y 111 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE--------------EEECSSSC---EEEEEECTTSS-E
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce--------------EeecCCcc---EEEEEECCCCC-E
Confidence 356677889999999999999999999999999998744332 12334444 99999999986 8
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
+++++.| +.|++||+...... .. ....+.+|...|.++.|++++ .+++++.|++|++||+++++ ++.
T Consensus 112 l~s~~~d-~~v~iw~~~~~~~~----~~----~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~--~~~ 178 (340)
T 1got_B 112 VACGGLD-NICSIYNLKTREGN----VR----VSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQ--QTT 178 (340)
T ss_dssp EEEEETT-CEEEEEETTTCSBS----CE----EEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTE--EEE
T ss_pred EEEEeCC-CeEEEEECccCCCc----ce----eEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCc--EEE
Confidence 8888888 99999999543211 11 122237899999999999876 48999999999999999876 666
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccc
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQE 330 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~ 330 (489)
.+.+|...|.+++|+|+++++++|+.||+|++||+++++.+..+.+|... |++++|+|++..+++.
T Consensus 179 ~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~----v~~v~~~p~~~~l~s~---------- 244 (340)
T 1got_B 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD----INAICFFPNGNAFATG---------- 244 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSC----EEEEEECTTSSEEEEE----------
T ss_pred EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCC----EEEEEEcCCCCEEEEE----------
Confidence 77799999999999999999999999999999999999888888888877 8888888877666532
Q ss_pred eeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 331 IHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 331 i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
+.|+. ..+++...+.....+.... . ...+..++|+|+ +.++++|+.|+.|++
T Consensus 245 ----------------s~d~~-v~iwd~~~~~~~~~~~~~~----~------~~~v~~~~~s~~-g~~l~~g~~d~~i~v 296 (340)
T 1got_B 245 ----------------SDDAT-CRLFDLRADQELMTYSHDN----I------ICGITSVSFSKS-GRLLLAGYDDFNCNV 296 (340)
T ss_dssp ----------------ETTSC-EEEEETTTTEEEEEECCTT----C------CSCEEEEEECTT-SSEEEEEETTSEEEE
T ss_pred ----------------cCCCc-EEEEECCCCcEEEEEccCC----c------ccceEEEEECCC-CCEEEEECCCCeEEE
Confidence 22211 1122222221111110000 0 001233456665 567788899999999
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
||+.+. +.+..+. +|.+.|++++|+|++.+||+|+.||.|+||.
T Consensus 297 wd~~~~----------~~~~~~~------------~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 297 WDALKA----------DRAGVLA------------GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EETTTC----------CEEEEEE------------CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEcccC----------cEeeEee------------cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999888 6777777 9999999999999999999999999999994
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=303.66 Aligned_cols=294 Identities=15% Similarity=0.222 Sum_probs=222.9
Q ss_pred ccccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 91 RRSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
.+..|...|.|++|+|++++||+|+.||+|+|||..+..... ....|... |.+++|+|++. .
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~--------------~~~~~~~~---v~~~~~sp~g~-~ 120 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH--------------AVTMPCTW---VMACAYAPSGC-A 120 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE--------------EEECSSSC---CCEEEECTTSS-E
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce--------------EEecCCCC---EEEEEECCCCC-E
Confidence 356688889999999999999999999999999987743322 11234444 88999999986 8
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
+++++.| +.+++|++....... ...... .+.+|...|.+++|+|++. .|++++.|++|++||+++++ ++.
T Consensus 121 lasg~~d-~~i~v~~~~~~~~~~--~~~~~~----~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~--~~~ 190 (354)
T 2pbi_B 121 IACGGLD-NKCSVYPLTFDKNEN--MAAKKK----SVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQ--LLQ 190 (354)
T ss_dssp EEEESTT-SEEEEEECCCCTTCC--SGGGCE----EEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCC--EEE
T ss_pred EEEeeCC-CCEEEEEEecccccc--ccccce----eeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCe--EEE
Confidence 8888888 999999995432211 111122 2367999999999999998 99999999999999999887 677
Q ss_pred eccCCCCceeEEEEee--cCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeec
Q 037120 251 LSTGSHGTLNSIQLHA--ENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVS 328 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p--~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~ 328 (489)
.+.+|...|.+++|+| ++.++++|+.||+|++||+++++++..+..|... |++++|+|++..+++.
T Consensus 191 ~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~----v~~v~~~p~~~~l~s~-------- 258 (354)
T 2pbi_B 191 SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESD----VNSVRYYPSGDAFASG-------- 258 (354)
T ss_dssp EEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSC----EEEEEECTTSSEEEEE--------
T ss_pred EEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCC----eEEEEEeCCCCEEEEE--------
Confidence 7889999999999988 4689999999999999999999998889888877 8888888877666532
Q ss_pred cceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcE
Q 037120 329 QEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGI 408 (489)
Q Consensus 329 ~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i 408 (489)
+.|+. .+++++..+.....+..... ......++|+|+ +.++++|+.|+.|
T Consensus 259 ------------------s~D~~-v~lwd~~~~~~~~~~~~~~~----------~~~~~~~~~s~~-g~~l~~g~~d~~i 308 (354)
T 2pbi_B 259 ------------------SDDAT-CRLYDLRADREVAIYSKESI----------IFGASSVDFSLS-GRLLFAGYNDYTI 308 (354)
T ss_dssp ------------------ETTSC-EEEEETTTTEEEEEECCTTC----------CSCEEEEEECTT-SSEEEEEETTSCE
T ss_pred ------------------eCCCe-EEEEECCCCcEEEEEcCCCc----------ccceeEEEEeCC-CCEEEEEECCCcE
Confidence 22111 11222222211111110000 001122455555 5678888999999
Q ss_pred EEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 409 HLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 409 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
+|||+.++ +.+..+. +|.+.|++++|+|++.+||+|+.||.|+||.
T Consensus 309 ~vwd~~~~----------~~~~~l~------------~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 309 NVWDVLKG----------SRVSILF------------GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEETTTC----------SEEEEEC------------CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEECCCC----------ceEEEEE------------CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99999888 6666666 9999999999999999999999999999994
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=304.60 Aligned_cols=322 Identities=11% Similarity=0.132 Sum_probs=219.8
Q ss_pred cccCCC-ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKP-GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~-~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..|.. .|.+++|+|+|++||+|+.|++|+|||+........ .....+|... |.+++|+|++. +
T Consensus 11 ~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~-----------~~~~~~h~~~---v~~~~~sp~g~-~ 75 (345)
T 3fm0_A 11 VPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK-----------SVLSEGHQRT---VRKVAWSPCGN-Y 75 (345)
T ss_dssp ECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE-----------EEECSSCSSC---EEEEEECTTSS-E
T ss_pred ecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee-----------eeeccccCCc---EEEEEECCCCC-E
Confidence 455666 699999999999999999999999999977432210 0111356666 99999999985 8
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-ce
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-SL 249 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~ 249 (489)
|++++.| ++|++||+.... . .....+.+|...|++++|+|+++ +|++++.|++|++||++.+... ++
T Consensus 76 l~s~s~D-~~v~iw~~~~~~------~----~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~ 143 (345)
T 3fm0_A 76 LASASFD-ATTCIWKKNQDD------F----ECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECV 143 (345)
T ss_dssp EEEEETT-SCEEEEEECCC-------E----EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEE
T ss_pred EEEEECC-CcEEEEEccCCC------e----EEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEE
Confidence 8888888 999999984321 1 12233488999999999999999 9999999999999999876432 45
Q ss_pred eeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc--cceeecCCccCCCCeeEEEeCCCCcceeeccccceee
Q 037120 250 ELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT--SAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIV 327 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~ 327 (489)
..+.+|...|.+++|+|++++|++++.|++|++||+++++. ...+.+|... |++++|+|++.++++......+
T Consensus 144 ~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~----v~~l~~sp~g~~l~s~s~D~~v- 218 (345)
T 3fm0_A 144 SVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHEST----VWSLAFDPSGQRLASCSDDRTV- 218 (345)
T ss_dssp EEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSC----EEEEEECTTSSEEEEEETTSCE-
T ss_pred EEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCc----eEEEEECCCCCEEEEEeCCCeE-
Confidence 56779999999999999999999999999999999988753 5677788877 8888888888777653222111
Q ss_pred ccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCc
Q 037120 328 SQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHG 407 (489)
Q Consensus 328 ~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~ 407 (489)
.++.+........+.....+..|..+......|.. .+..++|.+++ .++++++.|+.
T Consensus 219 --~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--------------------~v~~v~~~~~~-~~l~s~~~d~~ 275 (345)
T 3fm0_A 219 --RIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSR--------------------TIYDIAWCQLT-GALATACGDDA 275 (345)
T ss_dssp --EEEEEECTTCTTCCCCC---CEEEEEEEECSSCSS--------------------CEEEEEECTTT-CCEEEEETTSC
T ss_pred --EEeccccCCCCccceeeccCCccceeEEecCCCCC--------------------cEEEEEEecCC-CEEEEEeCCCe
Confidence 11111111110000000001111111111111111 12335566664 46778889999
Q ss_pred EEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCC-eEEeccCcceeEEEeccccc
Q 037120 408 IHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN-TIVAGTKNSSLLVVSQKQQC 481 (489)
Q Consensus 408 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~-~i~sgs~dg~i~v~~~~~~~ 481 (489)
|++|+......... ........... +|.+.|++++|+|++. +|||||.||+|+||....+.
T Consensus 276 i~vw~~~~~~~~~~-~~~~~~~~~~~------------~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 276 IRVFQEDPNSDPQQ-PTFSLTAHLHQ------------AHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp EEEEEECTTSCTTS-CCEEEEEEETT------------SSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred EEEEEeCCCCCcce-eeEEEEeeecc------------cccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 99999876510000 00000001122 8999999999999985 99999999999999876554
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-38 Score=325.01 Aligned_cols=331 Identities=11% Similarity=0.130 Sum_probs=232.6
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccC-----CC--------CCCCCCc----------------
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCN-----GT--------LPGVGLK---------------- 142 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~-----~~--------~~~~g~~---------------- 142 (489)
+..|...|++++|+|+|++||+|+.||+|+|||+.+...... .. .+. |..
T Consensus 55 ~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~d-g~~l~~~~~~~~~~~~v~~ 133 (611)
T 1nr0_A 55 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSE-SKRIAAVGEGRERFGHVFL 133 (611)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTT-SCEEEEEECCSSCSEEEEE
T ss_pred ecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCC-CCEEEEEECCCCceeEEEE
Confidence 556777899999999999999999999999999864321100 00 000 000
Q ss_pred ----ccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEE
Q 037120 143 ----EDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLA 218 (489)
Q Consensus 143 ----~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 218 (489)
.....+.+|... |.+++|+|++...|++++.| ++|++||.... + +..++.+|...|++++
T Consensus 134 wd~~~~~~~l~gh~~~---v~~v~f~p~~~~~l~s~s~D-~~v~lwd~~~~-----~-------~~~~l~~H~~~V~~v~ 197 (611)
T 1nr0_A 134 FDTGTSNGNLTGQARA---MNSVDFKPSRPFRIISGSDD-NTVAIFEGPPF-----K-------FKSTFGEHTKFVHSVR 197 (611)
T ss_dssp TTTCCBCBCCCCCSSC---EEEEEECSSSSCEEEEEETT-SCEEEEETTTB-----E-------EEEEECCCSSCEEEEE
T ss_pred eeCCCCcceecCCCCC---ceEEEECCCCCeEEEEEeCC-CeEEEEECCCC-----e-------EeeeeccccCceEEEE
Confidence 001123456666 99999999987779999988 99999998221 1 2233488999999999
Q ss_pred EecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc-------CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCccc
Q 037120 219 FSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST-------GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTS 291 (489)
Q Consensus 219 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~ 291 (489)
|+|+++ +|++++.|++|++||+++++ +...+. +|.+.|.+++|+|++++|++++.|++|++||+++++++
T Consensus 198 fspdg~-~las~s~D~~i~lwd~~~g~--~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~ 274 (611)
T 1nr0_A 198 YNPDGS-LFASTGGDGTIVLYNGVDGT--KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVE 274 (611)
T ss_dssp ECTTSS-EEEEEETTSCEEEEETTTCC--EEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE
T ss_pred ECCCCC-EEEEEECCCcEEEEECCCCc--EeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCcee
Confidence 999999 99999999999999998876 444442 79999999999999999999999999999999987654
Q ss_pred cee-------------------------------------------ecCCccCCCCeeEEEeCCCCcceeeccccc----
Q 037120 292 APF-------------------------------------------HNHKEVCHLPLTSLKLASMLEKIGTLKAQS---- 324 (489)
Q Consensus 292 ~~~-------------------------------------------~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~---- 324 (489)
..+ .+|... |++++|+|+++.+++.....
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~----v~~l~~spdg~~l~s~s~D~~v~~ 350 (611)
T 1nr0_A 275 KTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKA----ITALSSSADGKTLFSADAEGHINS 350 (611)
T ss_dssp EEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSC----EEEEEECTTSSEEEEEETTSCEEE
T ss_pred eeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCC----EEEEEEeCCCCEEEEEeCCCcEEE
Confidence 333 356655 99999999998874321000
Q ss_pred -------------eeec---------------------------------------------------------------
Q 037120 325 -------------KIVS--------------------------------------------------------------- 328 (489)
Q Consensus 325 -------------~~~~--------------------------------------------------------------- 328 (489)
..+.
T Consensus 351 Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~ 430 (611)
T 1nr0_A 351 WDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC 430 (611)
T ss_dssp EETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE
T ss_pred EECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEe
Confidence 0011
Q ss_pred ------------------cceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcce
Q 037120 329 ------------------QEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPS 390 (489)
Q Consensus 329 ------------------~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (489)
..+.+++|+|+++++++++.|+. ..++++..+....... ......+..++
T Consensus 431 ~~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~-v~lwd~~~~~~~~~~~-----------~~h~~~v~~v~ 498 (611)
T 1nr0_A 431 YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSK-VHVYKLSGASVSEVKT-----------IVHPAEITSVA 498 (611)
T ss_dssp SSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSE-EEEEEEETTEEEEEEE-----------EECSSCEEEEE
T ss_pred CceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCe-EEEEEccCCceeeeec-----------cCCCCceEEEE
Confidence 12445666666666666555443 1233332221100000 00011234467
Q ss_pred eecCCcEEEEeecCCCcEEEEeccC-CCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCc
Q 037120 391 WLSTNSIYAVGSSSDHGIHLLDFFP-GSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKN 469 (489)
Q Consensus 391 ~~~~~~~~l~sgs~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~d 469 (489)
|+|+ +.++++++.|++|++||+.+ + +...... +.+|.+.|++++|+|++.+||+|+.|
T Consensus 499 fspd-g~~las~s~d~~v~~w~~~~~~----------~~~~~~~----------~~~H~~~V~~v~fspdg~~lasgs~D 557 (611)
T 1nr0_A 499 FSNN-GAFLVATDQSRKVIPYSVANNF----------ELAHTNS----------WTFHTAKVACVSWSPDNVRLATGSLD 557 (611)
T ss_dssp ECTT-SSEEEEEETTSCEEEEEGGGTT----------EESCCCC----------CCCCSSCEEEEEECTTSSEEEEEETT
T ss_pred ECCC-CCEEEEEcCCCCEEEEEcCCCC----------ceeeeee----------eeecccceeEEEECCCCCEEEEEECC
Confidence 7777 45778899999999999987 4 3322200 11599999999999999999999999
Q ss_pred ceeEEEeccc
Q 037120 470 SSLLVVSQKQ 479 (489)
Q Consensus 470 g~i~v~~~~~ 479 (489)
++|+||..+.
T Consensus 558 ~~v~lW~~~~ 567 (611)
T 1nr0_A 558 NSVIVWNMNK 567 (611)
T ss_dssp SCEEEEETTC
T ss_pred CcEEEEECCC
Confidence 9999998764
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=300.34 Aligned_cols=287 Identities=14% Similarity=0.109 Sum_probs=220.2
Q ss_pred cccCCCceeEEEECCC----CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCC
Q 037120 92 RSFGKPGISALDFDCK----GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLAN 167 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~----g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~ 167 (489)
...|...|.+++|+|+ +.+||+|+.|++|+||++...... ....+.+|... |.+++|++++
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~------------~~~~l~gh~~~---v~~~~~~~~~ 92 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD------------LQWSLEGHQLG---VVSVDISHTL 92 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE------------EEEEECCCSSC---EEEEEECSSS
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee------------eeeeeccCCCC---EEEEEECCCC
Confidence 4567788999999985 679999999999999998763221 11223567766 9999999998
Q ss_pred CCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC
Q 037120 168 QDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP 247 (489)
Q Consensus 168 ~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 247 (489)
. ++++++.| ++|++||+..+ ..+ . .+..|...+.+++|+|+++ +|++++.||.|++||+++++
T Consensus 93 ~-~l~s~s~D-~~i~lWd~~~~-----~~~---~----~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~-- 155 (321)
T 3ow8_A 93 P-IAASSSLD-AHIRLWDLENG-----KQI---K----SIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGK-- 155 (321)
T ss_dssp S-EEEEEETT-SEEEEEETTTT-----EEE---E----EEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCS--
T ss_pred C-EEEEEeCC-CcEEEEECCCC-----CEE---E----EEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCc--
Confidence 5 88899988 99999999432 211 1 1255778899999999999 99999999999999999876
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceee
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIV 327 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~ 327 (489)
....+..|...|.+++|+|++++|++|+.||.|++||+++++.+..+.+|... |++++|+|++..+++....
T Consensus 156 ~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~----v~~l~~spd~~~l~s~s~d---- 227 (321)
T 3ow8_A 156 KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP----IRSLTFSPDSQLLVTASDD---- 227 (321)
T ss_dssp EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC----CCEEEECTTSCEEEEECTT----
T ss_pred eeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCc----eeEEEEcCCCCEEEEEcCC----
Confidence 44456678889999999999999999999999999999999999999988866 8999888888776542211
Q ss_pred ccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCc
Q 037120 328 SQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHG 407 (489)
Q Consensus 328 ~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~ 407 (489)
+. +..+..... .....+.+|...+ ..++|+|+ +.++++|+.|+.
T Consensus 228 ------------g~-i~iwd~~~~--~~~~~~~~h~~~v--------------------~~~~~sp~-~~~l~s~s~D~~ 271 (321)
T 3ow8_A 228 ------------GY-IKIYDVQHA--NLAGTLSGHASWV--------------------LNVAFCPD-DTHFVSSSSDKS 271 (321)
T ss_dssp ------------SC-EEEEETTTC--CEEEEECCCSSCE--------------------EEEEECTT-SSEEEEEETTSC
T ss_pred ------------Ce-EEEEECCCc--ceeEEEcCCCCce--------------------EEEEECCC-CCEEEEEeCCCc
Confidence 11 111111100 1122222332222 22455555 457888999999
Q ss_pred EEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 408 IHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 408 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
|+|||+.++ +.+..+. +|.+.|.+++|+|++..|++++.||.|+||.
T Consensus 272 v~iwd~~~~----------~~~~~~~------------~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 272 VKVWDVGTR----------TCVHTFF------------DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp EEEEETTTT----------EEEEEEC------------CCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred EEEEeCCCC----------EEEEEEc------------CCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 999999988 7777777 8999999999999999999999999999996
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=291.90 Aligned_cols=282 Identities=15% Similarity=0.237 Sum_probs=218.4
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|...|++++|+|+|++||+|+.||.|+||++.+..... .+.+|... |.+++|+|++. +|
T Consensus 19 ~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~--------------~~~~h~~~---v~~~~~~~~~~-~l 80 (312)
T 4ery_A 19 LAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK--------------TISGHKLG---ISDVAWSSDSN-LL 80 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE--------------EECCCSSC---EEEEEECTTSS-EE
T ss_pred EcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch--------------hhccCCCc---eEEEEEcCCCC-EE
Confidence 55677889999999999999999999999999998743332 12445555 99999999985 88
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++.| +.|++||+... .. ...+.+|...|.+++|+|+++ +|++++.|+.|++||+++++ ++..
T Consensus 81 ~s~~~d-~~i~vwd~~~~-----~~-------~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~--~~~~ 144 (312)
T 4ery_A 81 VSASDD-KTLKIWDVSSG-----KC-------LKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGK--CLKT 144 (312)
T ss_dssp EEEETT-SEEEEEETTTC-----CE-------EEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCC--EEEE
T ss_pred EEECCC-CEEEEEECCCC-----cE-------EEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCE--EEEE
Confidence 888888 99999999432 11 122367999999999999999 99999999999999999876 6667
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeec-CCccCCCCeeEEEeCCCCcceeeccccceeeccc
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHN-HKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQE 330 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~ 330 (489)
+..|...|.+++|+|+++++++++.||.|++||+++++.+..+.. +... +..++|+|++..++
T Consensus 145 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~------------ 208 (312)
T 4ery_A 145 LPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP----VSFVKFSPNGKYIL------------ 208 (312)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCC----EEEEEECTTSSEEE------------
T ss_pred ecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCc----eEEEEECCCCCEEE------------
Confidence 778999999999999999999999999999999999877665542 2323 66666666665544
Q ss_pred eeEEEeCCCCCeEEEEEecCCceEEEEe--------eccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEee
Q 037120 331 IHSIDLDPSCSYQLAFHLDDGWSGVLDV--------YNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGS 402 (489)
Q Consensus 331 i~~~~~~p~~~~~~~~~~~~~w~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 402 (489)
+++.++. ..++++ +.++.....+. ...+.+.++.++++|
T Consensus 209 --------------~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~l~sg 255 (312)
T 4ery_A 209 --------------AATLDNT-LKLWDYSKGKCLKTYTGHKNEKYCI------------------FANFSVTGGKWIVSG 255 (312)
T ss_dssp --------------EEETTTE-EEEEETTTTEEEEEECSSCCSSSCC------------------CEEEECSSSCEEEEC
T ss_pred --------------EEcCCCe-EEEEECCCCcEEEEEEecCCceEEE------------------EEEEEeCCCcEEEEE
Confidence 3222221 112222 22222221111 123444558899999
Q ss_pred cCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEecc--CcceeEEEecc
Q 037120 403 SSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGT--KNSSLLVVSQK 478 (489)
Q Consensus 403 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs--~dg~i~v~~~~ 478 (489)
+.|+.|++||+.++ +.+..+. +|.+.|.+++|||+++.+++++ .||.|+||..+
T Consensus 256 ~~dg~i~vwd~~~~----------~~~~~~~------------~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 256 SEDNLVYIWNLQTK----------EIVQKLQ------------GHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp CTTSCEEEEETTTC----------CEEEEEC------------CCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CCCCEEEEEECCCc----------hhhhhhh------------ccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99999999999988 7777777 9999999999999999999986 69999999754
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-38 Score=305.85 Aligned_cols=309 Identities=17% Similarity=0.220 Sum_probs=225.1
Q ss_pred ccccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 91 RRSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
.+..|...|++++|+|+|++||+|+.||+|+|||+.+..... .+.+|... |.+++|+|++. .
T Consensus 61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~--------------~~~~h~~~---v~~~~~s~~g~-~ 122 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH--------------AIKLHCPW---VMECAFAPNGQ-S 122 (380)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE--------------EEECCCTT---CCCCEECTTSS-E
T ss_pred cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce--------------EEecCCCC---EEEEEECCCCC-E
Confidence 366678889999999999999999999999999998744333 12445555 88899999986 8
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
|++++.| +.|++||+....... .... ....+.+|...|.++.|.|++...|++|+.|++|++||+++++ ++.
T Consensus 123 las~~~d-~~v~iw~~~~~~~~~-~~~~----~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~--~~~ 194 (380)
T 3iz6_a 123 VACGGLD-SACSIFNLSSQADRD-GNMP----VSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQ--RIS 194 (380)
T ss_dssp EEECCSS-SCCEEEECCCCSSCC-CSST----TCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCC--EEE
T ss_pred EEEeeCC-CcEEEEECCCCcccc-CCcc----ceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCc--EEE
Confidence 8888888 999999995432111 1111 1122488999999999999876689999999999999999876 343
Q ss_pred ec-----cCCCCceeEEEEee-cCCEEEEEeCCCeEEEEEcCC-CcccceeecCCccCCCCeeEEEeCCCCcceeecccc
Q 037120 251 LS-----TGSHGTLNSIQLHA-ENQIIFAAGKHGSIYLWDLRG-GRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQ 323 (489)
Q Consensus 251 ~~-----~~h~~~v~~~~~~p-~~~~l~~~~~dg~i~lwd~~~-~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~ 323 (489)
.+ .+|...|.+++|+| ++.++++|+.||+|++||++. .+.+..+.+|... |++++|+|++..+++
T Consensus 195 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~----v~~v~~~p~~~~l~s---- 266 (380)
T 3iz6_a 195 IFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGD----INSVKFFPDGQRFGT---- 266 (380)
T ss_dssp EECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSC----CCEEEECTTSSEEEE----
T ss_pred EeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCC----eEEEEEecCCCeEEE----
Confidence 33 57899999999987 788999999999999999984 4667888888877 888888877766553
Q ss_pred ceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeec
Q 037120 324 SKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSS 403 (489)
Q Consensus 324 ~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs 403 (489)
++.|+. .++++...+.....+......... ....+..++|+|+| .++++|+
T Consensus 267 ----------------------~s~D~~-i~lwd~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~~s~~g-~~l~~g~ 317 (380)
T 3iz6_a 267 ----------------------GSDDGT-CRLFDMRTGHQLQVYNREPDRNDN-----ELPIVTSVAFSISG-RLLFAGY 317 (380)
T ss_dssp ----------------------ECSSSC-EEEEETTTTEEEEEECCCCSSSCC-----SSCSCSEEEECSSS-SEEEEEC
T ss_pred ----------------------EcCCCe-EEEEECCCCcEEEEeccccccccc-----ccCceEEEEECCCC-CEEEEEE
Confidence 222221 123444333333222111000000 00113446777774 5677789
Q ss_pred CCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccc
Q 037120 404 SDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 404 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
.|+.|++||+..+ +.+..+. ....+|.+.|++++|+|++.+|++||.||.|+||..+..
T Consensus 318 ~dg~i~vwd~~~~----------~~~~~~~--------~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 318 SNGDCYVWDTLLA----------EMVLNLG--------TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp TTSCEEEEETTTC----------CEEEEEC--------CSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred CCCCEEEEECCCC----------ceEEEEe--------cccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 9999999999877 5544431 001279999999999999999999999999999986643
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-38 Score=292.91 Aligned_cols=281 Identities=12% Similarity=0.144 Sum_probs=211.1
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
|..|...|.+++|+|+|++||+|+.||+|+|||+.+..... .+..|... |.+++|+|++. +|
T Consensus 9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~--------------~~~~~~~~---v~~~~~~~~~~-~l 70 (304)
T 2ynn_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR--------------SIQVTETP---VRAGKFIARKN-WI 70 (304)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE--------------EEECCSSC---EEEEEEEGGGT-EE
T ss_pred ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE--------------EeeccCCc---EEEEEEeCCCC-EE
Confidence 56677889999999999999999999999999998854433 12345444 99999999985 88
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++.| ++|++||+..+ .. ...+.+|...|++++|+|+++ +|++|+.|++|++||++++.. +...
T Consensus 71 ~s~s~d-~~i~vwd~~~~-----~~-------~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~-~~~~ 135 (304)
T 2ynn_A 71 IVGSDD-FRIRVFNYNTG-----EK-------VVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWA-LEQT 135 (304)
T ss_dssp EEEETT-SEEEEEETTTC-----CE-------EEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTE-EEEE
T ss_pred EEECCC-CEEEEEECCCC-----cE-------EEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcc-hhhh
Confidence 888888 99999999432 11 222378999999999999999 999999999999999987632 3456
Q ss_pred ccCCCCceeEEEEee-cCCEEEEEeCCCeEEEEEcCCCcccceee-cCCccCCCCeeEEEeCCCCcceeeccccceeecc
Q 037120 252 STGSHGTLNSIQLHA-ENQIIFAAGKHGSIYLWDLRGGRTSAPFH-NHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQ 329 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p-~~~~l~~~~~dg~i~lwd~~~~~~~~~~~-~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~ 329 (489)
+.+|...|.+++|+| ++..+++|+.|++|++||++++.....+. .|... +..+.|+|.
T Consensus 136 ~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~----v~~~~~~~~---------------- 195 (304)
T 2ynn_A 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG----VNYVDYYPL---------------- 195 (304)
T ss_dssp ECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTC----EEEEEECCS----------------
T ss_pred hcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCc----EEEEEEEEc----------------
Confidence 779999999999999 57899999999999999999877655554 33334 666666552
Q ss_pred ceeEEEeCCCCCeEEEEEecCC---ce----EEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEee
Q 037120 330 EIHSIDLDPSCSYQLAFHLDDG---WS----GVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGS 402 (489)
Q Consensus 330 ~i~~~~~~p~~~~~~~~~~~~~---w~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 402 (489)
+++.++++++.|+. |. ..+..+.+|...+ ..++|+|+ +.++++|
T Consensus 196 --------~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v--------------------~~~~~~p~-~~~l~s~ 246 (304)
T 2ynn_A 196 --------PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV--------------------SFAVFHPT-LPIIISG 246 (304)
T ss_dssp --------TTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCE--------------------EEEEECSS-SSEEEEE
T ss_pred --------CCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCE--------------------EEEEECCC-CCEEEEE
Confidence 23334444443332 21 2222333333222 22345555 4578899
Q ss_pred cCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCC--eEEeccCcceeEEEe
Q 037120 403 SSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN--TIVAGTKNSSLLVVS 476 (489)
Q Consensus 403 s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~--~i~sgs~dg~i~v~~ 476 (489)
+.|+.|+|||+.+. +.+..+. .|.+.|.+++|+|++. ++|+|+.||.+.+--
T Consensus 247 s~Dg~i~iWd~~~~----------~~~~~~~------------~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~ 300 (304)
T 2ynn_A 247 SEDGTLKIWNSSTY----------KVEKTLN------------VGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300 (304)
T ss_dssp ETTSCEEEEETTTC----------CEEEEEC------------CSSSSEEEEEECTTCGGGCEEEEETTEEEEEEC
T ss_pred cCCCeEEEEECCCC----------ceeeecc------------CCCccEEEEEECCCCCceEEEEecCCceEEEEe
Confidence 99999999999998 7777777 8999999999999885 588888877665543
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-36 Score=312.24 Aligned_cols=326 Identities=13% Similarity=0.195 Sum_probs=235.6
Q ss_pred cccCCCceeEEEECCCCc-EEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDCKGI-YLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~-~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..|...|++++|+|++. .|++|+.|++|++||..+.++.. .+.+|... |.+++|+|++. +
T Consensus 143 l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~--------------~l~~H~~~---V~~v~fspdg~-~ 204 (611)
T 1nr0_A 143 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS--------------TFGEHTKF---VHSVRYNPDGS-L 204 (611)
T ss_dssp CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE--------------EECCCSSC---EEEEEECTTSS-E
T ss_pred ecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEee--------------eeccccCc---eEEEEECCCCC-E
Confidence 456777899999999987 69999999999999987744332 23456665 99999999986 8
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC---
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP--- 247 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--- 247 (489)
|++++.| ++|++||+..+. .+...........+|...|.+++|+|++. +|++++.|++|++||+++++..
T Consensus 205 las~s~D-~~i~lwd~~~g~-----~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~ 277 (611)
T 1nr0_A 205 FASTGGD-GTIVLYNGVDGT-----KTGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTI 277 (611)
T ss_dssp EEEEETT-SCEEEEETTTCC-----EEEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EEEEECC-CcEEEEECCCCc-----EeeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeee
Confidence 8889888 999999984331 11111000000137999999999999999 9999999999999999875411
Q ss_pred --------------------------------------ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCc
Q 037120 248 --------------------------------------SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGR 289 (489)
Q Consensus 248 --------------------------------------~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~ 289 (489)
+...+.+|...|++++|+|++++|++++.|++|++||+.+++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~ 357 (611)
T 1nr0_A 278 PVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGI 357 (611)
T ss_dssp ECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred cCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCc
Confidence 112334899999999999999999999999999999998765
Q ss_pred cccee-ecCCcc--------------------------------------------------------------------
Q 037120 290 TSAPF-HNHKEV-------------------------------------------------------------------- 300 (489)
Q Consensus 290 ~~~~~-~~~~~~-------------------------------------------------------------------- 300 (489)
....+ ..|...
T Consensus 358 ~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~ 437 (611)
T 1nr0_A 358 SNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 437 (611)
T ss_dssp EEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEE
T ss_pred eeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEE
Confidence 42221 011000
Q ss_pred ---------CCCCeeEEEeCCCCcceeeccc-----------------cceeeccceeEEEeCCCCCeEEEEEecCCceE
Q 037120 301 ---------CHLPLTSLKLASMLEKIGTLKA-----------------QSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSG 354 (489)
Q Consensus 301 ---------~~~~v~~l~~~~~~~~i~~~~~-----------------~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~ 354 (489)
....+.+++|+|+|+.+++... ....+...|.+++|+|++.++++.+.++.. .
T Consensus 438 ~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v-~ 516 (611)
T 1nr0_A 438 SHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKV-I 516 (611)
T ss_dssp ETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCE-E
T ss_pred eCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCE-E
Confidence 0022678899999988743211 112356789999999999999988877652 3
Q ss_pred EEEeec-cceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCc-cc-ch
Q 037120 355 VLDVYN-SRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNE-DI-ES 431 (489)
Q Consensus 355 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~-~~-~~ 431 (489)
+++... +...... .+. .+...+..++|+|++ .+|++|+.|++|+|||+..+ . .. ..
T Consensus 517 ~w~~~~~~~~~~~~----~~~------~H~~~V~~v~fspdg-~~lasgs~D~~v~lW~~~~~----------~~~~~~~ 575 (611)
T 1nr0_A 517 PYSVANNFELAHTN----SWT------FHTAKVACVSWSPDN-VRLATGSLDNSVIVWNMNKP----------SDHPIII 575 (611)
T ss_dssp EEEGGGTTEESCCC----CCC------CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTCT----------TSCCEEE
T ss_pred EEEcCCCCceeeee----eee------ecccceeEEEECCCC-CEEEEEECCCcEEEEECCCc----------ccccchh
Confidence 444443 2211100 000 011234557788874 57888999999999999876 3 22 34
Q ss_pred hhHhhhhcccCCcccC-CCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 432 LSERTKLKKENRFVPL-SEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 432 ~~~~~~~~~~~~~~~h-~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
+. +| .+.|++++|+|++. |++|+.||+|++|..
T Consensus 576 ~~------------~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 576 KG------------AHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp TT------------SSTTSCEEEEEEEETTE-EEEEETTSCEEEEEC
T ss_pred hc------------cCcccCeeEEEEcCCCE-EEEecCCCCEEEEec
Confidence 45 89 89999999999998 999999999999975
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-36 Score=307.94 Aligned_cols=305 Identities=14% Similarity=0.209 Sum_probs=236.6
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..+...|.+++|+|+|++|++++.|+.|++||...... ..+.+|... |.+++|+|++. .+
T Consensus 258 ~~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~---------------~~~~~h~~~---v~~~~~~~~~~-~l 318 (577)
T 2ymu_A 258 LTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLL---------------QTLTGHSSS---VWGVAFSPDGQ-TI 318 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEE---------------EEECCCSSC---EEEEEECTTSS-EE
T ss_pred EecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCCcEE---------------EEEecCCCC---eEEEEECCCCC-EE
Confidence 445667799999999999999999999999999765211 112456655 99999999986 78
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++.| ++|++||+... . ...+.+|...|.+++|+|++. .|++++.|+.|++||.. ++ .+..
T Consensus 319 ~t~~~d-~~i~~w~~~~~-----~--------~~~~~~~~~~v~~~~~s~~g~-~l~~~~~dg~v~~~~~~-~~--~~~~ 380 (577)
T 2ymu_A 319 ASASDD-KTVKLWNRNGQ-----H--------LQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRN-GQ--LLQT 380 (577)
T ss_dssp EEEETT-SCEEEEETTSC-----E--------EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETT-CC--EEEE
T ss_pred EEEeCC-CeEEEEeCCCC-----e--------eEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEcCC-CC--EEEE
Confidence 888887 99999998321 1 112377899999999999999 99999999999999964 34 5666
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccc---------
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKA--------- 322 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~--------- 322 (489)
+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|... |++++|+|+++.+++...
T Consensus 381 ~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~----v~~~~~s~d~~~l~~~~~d~~v~~w~~ 455 (577)
T 2ymu_A 381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS----VWGVAFSPDDQTIASASDDKTVKLWNR 455 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSC----EEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCC----eEEEEECCCCCEEEEEcCCCEEEEEEC
Confidence 7799999999999999999999999999999995 56778888899877 999999999988854221
Q ss_pred ------cceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCc
Q 037120 323 ------QSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNS 396 (489)
Q Consensus 323 ------~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (489)
....+...|.+++|+|++.++++++.++. ..+++. ++....... .. ...+..++|+|+ +
T Consensus 456 ~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~-i~iw~~-~~~~~~~~~------~h------~~~v~~l~~s~d-g 520 (577)
T 2ymu_A 456 NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWNR-NGQLLQTLT------GH------SSSVRGVAFSPD-G 520 (577)
T ss_dssp TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSE-EEEEET-TSCEEEEEE------CC------SSCEEEEEECTT-S
T ss_pred CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE-EEEEcC-CCCEEEEEe------CC------CCCEEEEEEcCC-C
Confidence 12234678999999999999888776654 223331 121111100 00 012234566666 4
Q ss_pred EEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 397 IYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 397 ~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
.+|++|+.|+.|+|||. ++ +.+..+. +|.+.|++++|+|++++|+|+|.||+|+||.
T Consensus 521 ~~l~s~~~dg~v~lwd~-~~----------~~~~~~~------------~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 521 QTIASASDDKTVKLWNR-NG----------QLLQTLT------------GHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp SCEEEEETTSEEEEECT-TS----------CEEEEEE------------CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred CEEEEEECcCEEEEEeC-CC----------CEEEEEc------------CCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 57888999999999996 45 5666677 9999999999999999999999999999995
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=276.83 Aligned_cols=260 Identities=10% Similarity=0.063 Sum_probs=198.5
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC-CCCE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA-NQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~-~~~~ 170 (489)
+..|...|.+++|+|+|++||+|+.|++|+|||+.... ......+.+|... |.+++|+++ ...+
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~------------~~~~~~l~gH~~~---V~~v~~s~~~~g~~ 69 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET------------HKLIDTLTGHEGP---VWRVDWAHPKFGTI 69 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC------------BCCCEEECCCSSC---EEEEEECCGGGCSE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC------------cEEEEEEccccCC---eEEEEecCCCcCCE
Confidence 45677789999999999999999999999999997521 1111234567766 999999864 2358
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecC--CCcEEEEEeCCCcEEEEECCCCCcCc
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAV--NTSRLIASDTHGVVNIWDRRVGVLPS 248 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~ 248 (489)
|++++.| ++|++||+..+... ... .+.+|...|++++|+|+ +. +|++++.|+.|++||++.+....
T Consensus 70 l~s~s~D-~~v~iWd~~~~~~~------~~~----~~~~h~~~v~~v~~~p~~~g~-~l~s~s~d~~v~~wd~~~~~~~~ 137 (297)
T 2pm7_B 70 LASCSYD-GKVMIWKEENGRWS------QIA----VHAVHSASVNSVQWAPHEYGP-MLLVASSDGKVSVVEFKENGTTS 137 (297)
T ss_dssp EEEEETT-TEEEEEEBSSSCBC------CCE----EECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEEBCSSSCBC
T ss_pred EEEEcCC-CEEEEEEcCCCceE------EEE----EeecCCCceeEEEeCcCCCCc-EEEEEECCCcEEEEEecCCCcee
Confidence 9999988 99999999533211 111 23679999999999998 66 99999999999999998764222
Q ss_pred eeeccCCCCceeEEEEeec-------------CCEEEEEeCCCeEEEEEcCCCc----ccceeecCCccCCCCeeEEEeC
Q 037120 249 LELSTGSHGTLNSIQLHAE-------------NQIIFAAGKHGSIYLWDLRGGR----TSAPFHNHKEVCHLPLTSLKLA 311 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~-------------~~~l~~~~~dg~i~lwd~~~~~----~~~~~~~~~~~~~~~v~~l~~~ 311 (489)
...+.+|...|.+++|+|+ +++|++|+.|++|++||+++++ ....+.+|... |.+++|+
T Consensus 138 ~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~----V~~v~~s 213 (297)
T 2pm7_B 138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW----VRDVAWS 213 (297)
T ss_dssp CEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC----EEEEEEC
T ss_pred eeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCc----eEEEEEC
Confidence 3355689999999999997 5789999999999999998865 34566677655 6666666
Q ss_pred CCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCccee
Q 037120 312 SMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSW 391 (489)
Q Consensus 312 ~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (489)
|++. .
T Consensus 214 p~~~------------------------------------------------------------~--------------- 218 (297)
T 2pm7_B 214 PTVL------------------------------------------------------------L--------------- 218 (297)
T ss_dssp CCCS------------------------------------------------------------S---------------
T ss_pred CCCC------------------------------------------------------------C---------------
Confidence 5420 0
Q ss_pred ecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcce
Q 037120 392 LSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSS 471 (489)
Q Consensus 392 ~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~ 471 (489)
+.++++|+.|++|+|||+...... .....+. ..+|.+.|.+++|+|++++||+|+.||.
T Consensus 219 ----~~~las~s~D~~v~iWd~~~~~~~-------~~~~~~~----------~~~~~~~v~~~~~s~~g~~las~~~D~~ 277 (297)
T 2pm7_B 219 ----RSYMASVSQDRTCIIWTQDNEQGP-------WKKTLLK----------EEKFPDVLWRASWSLSGNVLALSGGDNK 277 (297)
T ss_dssp ----SEEEEEEETTSCEEEEEESSTTSC-------CEEEESS----------SSCCSSCEEEEEECSSSCCEEEEETTSC
T ss_pred ----ceEEEEEECCCcEEEEEeCCCCCc-------cceeeee----------cccCCCcEEEEEECCCCCEEEEEcCCCc
Confidence 467889999999999999765100 0001110 0168899999999999999999999999
Q ss_pred eEEEecc
Q 037120 472 LLVVSQK 478 (489)
Q Consensus 472 i~v~~~~ 478 (489)
|+||...
T Consensus 278 v~lw~~~ 284 (297)
T 2pm7_B 278 VTLWKEN 284 (297)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 9999765
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-36 Score=283.45 Aligned_cols=304 Identities=12% Similarity=0.123 Sum_probs=202.3
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|...|.+++|+|+ +||+|+.|++|+|||+....... .......+|... |.+++|+|++. +|
T Consensus 10 ~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~----------~~~~~~~~h~~~---v~~v~~sp~~~-~l 73 (330)
T 2hes_X 10 LKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTL----------IDVLDETAHKKA---IRSVAWRPHTS-LL 73 (330)
T ss_dssp EECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEE----------EEEECTTCCCSC---EEEEEECTTSS-EE
T ss_pred eccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEE----------EEEEecCCccCC---EEEEEECCCCC-EE
Confidence 5567788999999988 99999999999999998632111 000001126555 99999999985 88
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCc--Cce
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVL--PSL 249 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~ 249 (489)
++++.| ++|+|||+....... . .......+.+|...|++++|+|++. +|++|+.|++|++||++.... .++
T Consensus 74 as~s~D-~~v~iw~~~~~~~~~-~----~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~ 146 (330)
T 2hes_X 74 AAGSFD-STVSIWAKEESADRT-F----EMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECI 146 (330)
T ss_dssp EEEETT-SCEEEEEC--------C----CCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEE
T ss_pred EEEeCC-CcEEEEEcccCcCcc-c----cceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEE
Confidence 889888 999999984321100 0 0112333488999999999999999 999999999999999964321 255
Q ss_pred eeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC--cccceeecCCccCCCCeeEEEeCCC--Ccceeeccccce
Q 037120 250 ELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGG--RTSAPFHNHKEVCHLPLTSLKLASM--LEKIGTLKAQSK 325 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~--~~~~~~~~~~~~~~~~v~~l~~~~~--~~~i~~~~~~~~ 325 (489)
..+.+|...|.+++|+|++.+|++++.|++|++||++++ +++..+.+|... |.+++|+|+ +..+++
T Consensus 147 ~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~----v~~~~~~~~~~~~~l~s------ 216 (330)
T 2hes_X 147 SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGT----VWSSDFDKTEGVFRLCS------ 216 (330)
T ss_dssp EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC----EEEEEECCSSSSCEEEE------
T ss_pred EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCc----EEEEEecCCCCeeEEEE------
Confidence 667799999999999999999999999999999999876 457788888877 899888887 333332
Q ss_pred eeccceeEEEeCCCCCeEEEEEecCCceEEEEeecccee---eecCCCCCCcCCCCccccccCCCcceeecCCcEEEEee
Q 037120 326 IVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVS---HVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGS 402 (489)
Q Consensus 326 ~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg 402 (489)
++.|+. .++++...+... ...+. ..+.. .....+..++|++. + ++++|
T Consensus 217 --------------------~s~D~~-v~iw~~~~~~~~~~~~~~~~-~~~~~-----~h~~~v~~v~~s~~-~-~l~s~ 267 (330)
T 2hes_X 217 --------------------GSDDST-VRVWKYMGDDEDDQQEWVCE-AILPD-----VHKRQVYNVAWGFN-G-LIASV 267 (330)
T ss_dssp --------------------EETTSC-EEEEEEEEECTTSCEEEEEE-EECCS-----CCSSCEEEEEECTT-S-CEEEE
T ss_pred --------------------EeCCCe-EEEEEecCCCccccceeEEe-eeccc-----ccccceEEEEEcCC-C-EEEEE
Confidence 111111 111221111000 00000 00000 00011233455533 3 78889
Q ss_pred cCCCcEEEEeccCCCCCCeeeccCcc--c-chhhHhhhhcccCCcccCCC-ceEEEEeeC--CCCeEEeccCcceeEEEe
Q 037120 403 SSDHGIHLLDFFPGSSSPSHVDYNED--I-ESLSERTKLKKENRFVPLSE-GVTACVTHP--LNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 403 s~d~~i~vwd~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~h~~-~V~~va~~p--~~~~i~sgs~dg~i~v~~ 476 (489)
+.|+.|+|||..++ +. . .... +|.. .|++++|+| ++.+||+|+.||.|+||.
T Consensus 268 ~~dg~v~iw~~~~~----------~~~~~~~~~~------------~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~ 325 (330)
T 2hes_X 268 GADGVLAVYEEVDG----------EWKVFAKRAL------------CHGVYEINVVKWLELNGKTILATGGDDGIVNFWS 325 (330)
T ss_dssp ETTSCEEEEEEETT----------EEEEEEEESC------------TTTTSCEEEEEEC-----CCEEEEETTSEEEEEE
T ss_pred eCCCEEEEEEcCCC----------ceEEEecccc------------ccccceEEEEEEecCCCceEEEEecCCCcEEEEE
Confidence 99999999998765 21 1 1122 6877 899999999 678999999999999998
Q ss_pred ccc
Q 037120 477 QKQ 479 (489)
Q Consensus 477 ~~~ 479 (489)
.++
T Consensus 326 ~~~ 328 (330)
T 2hes_X 326 LEK 328 (330)
T ss_dssp C--
T ss_pred ecc
Confidence 653
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-35 Score=299.44 Aligned_cols=309 Identities=14% Similarity=0.211 Sum_probs=237.8
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..+...|.+++|+|+|.+|++|+.|+.|++||..... .. .+.+|... |.+++|+|++. .+
T Consensus 217 ~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~~~-~~--------------~~~~~~~~---v~~v~~~~d~~-~l 277 (577)
T 2ymu_A 217 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQ--------------TLTGHSSS---VNGVAFRPDGQ-TI 277 (577)
T ss_dssp EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE-EE--------------EECCCSSC---EEEEEECTTSS-EE
T ss_pred EecCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCCE-EE--------------EEecCCCC---EEEEEEcCCCC-EE
Confidence 34566779999999999999999999999999975421 11 12445555 99999999986 77
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++.| +.|++||... .. ...+.+|...|.+++|+|++. .|++++.|+.|++||+... .+..
T Consensus 278 ~~~~~d-~~i~~w~~~~------~~-------~~~~~~h~~~v~~~~~~~~~~-~l~t~~~d~~i~~w~~~~~---~~~~ 339 (577)
T 2ymu_A 278 ASASDD-KTVKLWNRNG------QL-------LQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRNGQ---HLQT 339 (577)
T ss_dssp EEEETT-SCEEEEETTS------CE-------EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTSC---EEEE
T ss_pred EEEeCC-CEEEEEeCCC------cE-------EEEEecCCCCeEEEEECCCCC-EEEEEeCCCeEEEEeCCCC---eeEE
Confidence 888877 9999999721 11 122378999999999999999 9999999999999998654 3446
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccc---------
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKA--------- 322 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~--------- 322 (489)
+.+|...|.+++|+|+++++++++.||.|++||. +++.+..+..|... |++++|+|+++.+++...
T Consensus 340 ~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~----v~~~~~s~dg~~l~~~~~d~~v~~~~~ 414 (577)
T 2ymu_A 340 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSS----VRGVAFSPDGQTIASASDDKTVKLWNR 414 (577)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSC----EEEEEECTTSSCEEEEETTSEEEEECT
T ss_pred EeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCC----eEEEEECCCCCEEEEEeCCCEEEEEeC
Confidence 6789999999999999999999999999999995 56778888898877 999999999998854221
Q ss_pred ------cceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCc
Q 037120 323 ------QSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNS 396 (489)
Q Consensus 323 ------~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (489)
....+...|..++|+|++.++++++.++. ..+++. .+....... .. ...+..++|+|+ +
T Consensus 415 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~-v~~w~~-~~~~~~~~~------~~------~~~v~~~~~spd-~ 479 (577)
T 2ymu_A 415 NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT-VKLWNR-NGQLLQTLT------GH------SSSVRGVAFSPD-G 479 (577)
T ss_dssp TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEET-TSCEEEEEE------CC------SSCEEEEEECTT-S
T ss_pred CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCE-EEEEEC-CCCEEEEEc------CC------CCCEEEEEEcCC-C
Confidence 12235678999999999999888776654 123332 111111000 00 011233566665 5
Q ss_pred EEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 397 IYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 397 ~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
.++++++.|+.|+|||. ++ +.+..+. +|...|++++|+|++.+||+|+.||.|+||.
T Consensus 480 ~~las~~~d~~i~iw~~-~~----------~~~~~~~------------~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 480 QTIASASDDKTVKLWNR-NG----------QLLQTLT------------GHSSSVRGVAFSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp CEEEEEETTSEEEEEET-TS----------CEEEEEE------------CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CEEEEEeCCCEEEEEcC-CC----------CEEEEEe------------CCCCCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence 67888899999999996 45 5666677 9999999999999999999999999999998
Q ss_pred cccc
Q 037120 477 QKQQ 480 (489)
Q Consensus 477 ~~~~ 480 (489)
...+
T Consensus 537 ~~~~ 540 (577)
T 2ymu_A 537 RNGQ 540 (577)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 5443
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=286.97 Aligned_cols=314 Identities=13% Similarity=0.166 Sum_probs=210.0
Q ss_pred cCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCccccc-ccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 94 FGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQS-KHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~-~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
.|...|.|++|+|+|++||+|+ ++.++||++.++...............+.. ...........|.+++|+|++. +|+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-~l~ 139 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK-FLA 139 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSS-EEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCC-EEE
Confidence 3667799999999999999987 689999999876544321000000000000 0000001112389999999986 788
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeec
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELS 252 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 252 (489)
+++.| ++|++||+... . ....+.+|...|++++|+|++. +|++++.|++|++||+++++ +...+
T Consensus 140 s~~~d-~~i~iwd~~~~-----~-------~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~--~~~~~ 203 (393)
T 1erj_A 140 TGAED-RLIRIWDIENR-----K-------IVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQ--CSLTL 203 (393)
T ss_dssp EEETT-SCEEEEETTTT-----E-------EEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTE--EEEEE
T ss_pred EEcCC-CeEEEEECCCC-----c-------EEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCe--eEEEE
Confidence 88888 99999999422 1 1223478999999999999999 99999999999999999876 44333
Q ss_pred cCCCCceeEEEEee-cCCEEEEEeCCCeEEEEEcCCCccccee-------ecCCccCCCCeeEEEeCCCCcceeeccccc
Q 037120 253 TGSHGTLNSIQLHA-ENQIIFAAGKHGSIYLWDLRGGRTSAPF-------HNHKEVCHLPLTSLKLASMLEKIGTLKAQS 324 (489)
Q Consensus 253 ~~h~~~v~~~~~~p-~~~~l~~~~~dg~i~lwd~~~~~~~~~~-------~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~ 324 (489)
.+...+.+++|+| ++.++++|+.||.|++||+++++.+..+ .+|... |.+++|+|++..+++.....
T Consensus 204 -~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~----v~~v~~~~~g~~l~s~s~d~ 278 (393)
T 1erj_A 204 -SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS----VYSVVFTRDGQSVVSGSLDR 278 (393)
T ss_dssp -ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSC----EEEEEECTTSSEEEEEETTS
T ss_pred -EcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCC----EEEEEECCCCCEEEEEeCCC
Confidence 4567899999999 8999999999999999999998876655 345544 77777777776665422111
Q ss_pred eeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecC
Q 037120 325 KIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSS 404 (489)
Q Consensus 325 ~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~ 404 (489)
.+. ++.+. .... ........ -......+.+|...+ ..++|.++ +.++++|+.
T Consensus 279 ~v~---~wd~~--~~~~-~~~~~~~~-~~~~~~~~~~h~~~v--------------------~~~~~~~~-~~~l~sgs~ 330 (393)
T 1erj_A 279 SVK---LWNLQ--NANN-KSDSKTPN-SGTCEVTYIGHKDFV--------------------LSVATTQN-DEYILSGSK 330 (393)
T ss_dssp EEE---EEEC-------------------CEEEEEECCSSCE--------------------EEEEECGG-GCEEEEEET
T ss_pred EEE---EEECC--CCCC-cccccCCC-CCcceEEEecccCcE--------------------EEEEECCC-CCEEEEEeC
Confidence 111 11100 0000 00000000 000111112222211 22344444 568889999
Q ss_pred CCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeC------CCCeEEeccCcceeEEEecc
Q 037120 405 DHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHP------LNNTIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 405 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p------~~~~i~sgs~dg~i~v~~~~ 478 (489)
|+.|++||+.++ +.+..+. +|.+.|.+++|+| ++++||+|+.||+|+||..+
T Consensus 331 D~~v~iwd~~~~----------~~~~~l~------------~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 331 DRGVLFWDKKSG----------NPLLMLQ------------GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp TSEEEEEETTTC----------CEEEEEE------------CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CCeEEEEECCCC----------eEEEEEC------------CCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccc
Confidence 999999999988 7777777 9999999999886 67899999999999999876
Q ss_pred cc
Q 037120 479 QQ 480 (489)
Q Consensus 479 ~~ 480 (489)
+.
T Consensus 389 ~~ 390 (393)
T 1erj_A 389 KI 390 (393)
T ss_dssp EC
T ss_pred cc
Confidence 53
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=276.44 Aligned_cols=305 Identities=11% Similarity=0.112 Sum_probs=210.8
Q ss_pred ccccCCCceeEEEE-----CC-CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEee
Q 037120 91 RRSFGKPGISALDF-----DC-KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWN 164 (489)
Q Consensus 91 ~~~~~~~~V~~~~f-----s~-~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~ 164 (489)
.+..|...|++++| ++ ++++||+|+.|++|+|||+........ .......+.+|... |.+++|+
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~-------~~~~~~~l~~h~~~---V~~~~~~ 85 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY-------FGIPHKALTGHNHF---VSDLALS 85 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB-------SEEEEEEECCCSSC---EEEEEEC
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc-------cccccchhccCCCc---eEEEEEC
Confidence 35667788999999 76 899999999999999999976322110 01222334567777 9999999
Q ss_pred CCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 037120 165 LANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVG 244 (489)
Q Consensus 165 ~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 244 (489)
|++. ++++++.| ++|++||++.+ .. ...+.+|...|.+++|+|++. +|++++.|++|++||+...
T Consensus 86 ~~~~-~l~s~s~D-~~v~lwd~~~~-----~~-------~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~ 150 (343)
T 2xzm_R 86 QENC-FAISSSWD-KTLRLWDLRTG-----TT-------YKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGE 150 (343)
T ss_dssp SSTT-EEEEEETT-SEEEEEETTSS-----CE-------EEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSC
T ss_pred CCCC-EEEEEcCC-CcEEEEECCCC-----cE-------EEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCC
Confidence 9985 88888888 99999999432 11 222378999999999999999 9999999999999999843
Q ss_pred CcCceeeccCCCCceeEEEEeecC----------CEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCC
Q 037120 245 VLPSLELSTGSHGTLNSIQLHAEN----------QIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASML 314 (489)
Q Consensus 245 ~~~~~~~~~~h~~~v~~~~~~p~~----------~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~ 314 (489)
..........|...|.+++|+|++ .++++++.||.|++||. .++....+.+|... |++++|+|++
T Consensus 151 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~----v~~~~~s~~g 225 (343)
T 2xzm_R 151 CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESN----VNHLSISPNG 225 (343)
T ss_dssp EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSC----EEEEEECTTS
T ss_pred ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCcccc----ceEEEECCCC
Confidence 211111223788999999999987 78999999999999994 45556777788766 8888888777
Q ss_pred cceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeecc-ceeeecCCCCCCcCCCCccccccCCCcceeec
Q 037120 315 EKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNS-RVSHVHCPPPAWLSDSNNSADQLHLRKPSWLS 393 (489)
Q Consensus 315 ~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (489)
.++++. +.|+. ..++++... ..... +... ..+..++|+|
T Consensus 226 ~~l~sg--------------------------s~dg~-v~iwd~~~~~~~~~~------~~~~-------~~v~~v~~sp 265 (343)
T 2xzm_R 226 KYIATG--------------------------GKDKK-LLIWDILNLTYPQRE------FDAG-------STINQIAFNP 265 (343)
T ss_dssp SEEEEE--------------------------ETTCE-EEEEESSCCSSCSEE------EECS-------SCEEEEEECS
T ss_pred CEEEEE--------------------------cCCCe-EEEEECCCCccccee------ecCC-------CcEEEEEECC
Confidence 666542 22211 112222110 00000 0000 1123466777
Q ss_pred CCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccc--hhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcce
Q 037120 394 TNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIE--SLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSS 471 (489)
Q Consensus 394 ~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~ 471 (489)
++. ++++ +.|+.|++||+.+. +... .+... .........+|...|++++|+|+++.|++|+.||.
T Consensus 266 ~~~-~la~-~~d~~v~iw~~~~~----------~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~ 332 (343)
T 2xzm_R 266 KLQ-WVAV-GTDQGVKIFNLMTQ----------SKAPVCTIEAE-PITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGV 332 (343)
T ss_dssp SSC-EEEE-EESSCEEEEESSSC----------CSCSEEECCCC-SGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSE
T ss_pred CCC-EEEE-ECCCCEEEEEeCCC----------CCCceEEeecC-cchhhhhhcCCCCceEEEEECCCCCeEEEecCCce
Confidence 754 4444 46888999999876 2211 11000 00001112378899999999999999999999999
Q ss_pred eEEEecc
Q 037120 472 LLVVSQK 478 (489)
Q Consensus 472 i~v~~~~ 478 (489)
|++|..+
T Consensus 333 v~~w~~~ 339 (343)
T 2xzm_R 333 IRTFSFE 339 (343)
T ss_dssp EEEEEEE
T ss_pred EEEEEEE
Confidence 9999765
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-34 Score=273.93 Aligned_cols=298 Identities=11% Similarity=0.106 Sum_probs=214.2
Q ss_pred ccccCCCceeEEEECCCC-cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCC
Q 037120 91 RRSFGKPGISALDFDCKG-IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQD 169 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~g-~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~ 169 (489)
++..|...|.+++|+|++ ++|++|+.|++|++|++....... ..+...+.+|... |.+++|+|++.
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~---------~~~~~~~~~h~~~---v~~~~~s~dg~- 78 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKF---------GVPVRSFKGHSHI---VQDCTLTADGA- 78 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEE---------EEEEEEEECCSSC---EEEEEECTTSS-
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccc---------cccceEEeCCccc---EEEEEECCCCC-
Confidence 466788889999999965 899999999999999987522111 1122234567776 99999999986
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
+|++++.| ++|++||+..+ .. ...+.+|...|.+++|+|++. +|++++.|++|++||++. . ++
T Consensus 79 ~l~s~s~D-~~v~~wd~~~~-----~~-------~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~-~--~~ 141 (319)
T 3frx_A 79 YALSASWD-KTLRLWDVATG-----ET-------YQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKG-Q--CL 141 (319)
T ss_dssp EEEEEETT-SEEEEEETTTT-----EE-------EEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTS-C--EE
T ss_pred EEEEEeCC-CEEEEEECCCC-----Ce-------eEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCC-C--eE
Confidence 88888888 99999999432 11 222378999999999999999 999999999999999974 3 45
Q ss_pred eeccCCCCceeEEEEeec------CCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeecccc
Q 037120 250 ELSTGSHGTLNSIQLHAE------NQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQ 323 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~p~------~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~ 323 (489)
..+.+|...|.+++|+|. +..+++++.|+.|++||+++++....+.+|... |.+++|+|++.++++..
T Consensus 142 ~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~----v~~~~~sp~g~~l~s~~-- 215 (319)
T 3frx_A 142 ATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN----INTLTASPDGTLIASAG-- 215 (319)
T ss_dssp EEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSC----EEEEEECTTSSEEEEEE--
T ss_pred EEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCc----EEEEEEcCCCCEEEEEe--
Confidence 667799999999999985 448999999999999999998888888888877 88888888877665422
Q ss_pred ceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeec
Q 037120 324 SKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSS 403 (489)
Q Consensus 324 ~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs 403 (489)
.|+. ..+++...+........ . ..+..++|+|++. ++++++
T Consensus 216 ------------------------~dg~-i~iwd~~~~~~~~~~~~------~-------~~v~~~~~sp~~~-~la~~~ 256 (319)
T 3frx_A 216 ------------------------KDGE-IMLWNLAAKKAMYTLSA------Q-------DEVFSLAFSPNRY-WLAAAT 256 (319)
T ss_dssp ------------------------TTCE-EEEEETTTTEEEEEEEC------C-------SCEEEEEECSSSS-EEEEEE
T ss_pred ------------------------CCCe-EEEEECCCCcEEEEecC------C-------CcEEEEEEcCCCC-EEEEEc
Confidence 1111 11222222211111000 0 1123356777654 444444
Q ss_pred CCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecc
Q 037120 404 SDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 404 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~ 478 (489)
+..+++|++... ..+..+. .........|...|.+++|+|++.+|++|+.||.|+||...
T Consensus 257 -~~~i~v~~~~~~----------~~~~~~~----~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~ 316 (319)
T 3frx_A 257 -ATGIKVFSLDPQ----------YLVDDLR----PEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVM 316 (319)
T ss_dssp -TTEEEEEEETTE----------EEEEEEC----CCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred -CCCcEEEEeCcC----------eeeeccC----ccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEe
Confidence 456999999876 3332221 00000112567889999999999999999999999999754
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-35 Score=277.06 Aligned_cols=260 Identities=11% Similarity=0.067 Sum_probs=195.6
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC-CCCE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA-NQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~-~~~~ 170 (489)
+..|...|++++|+|+|++||+|+.|++|+|||+.+.... ....+.+|... |.+++|+++ ...+
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~------------~~~~l~gH~~~---V~~v~~~~~~~~~~ 73 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI------------LIADLRGHEGP---VWQVAWAHPMYGNI 73 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE------------EEEEEECCSSC---EEEEEECCGGGSSC
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE------------EEEEEcCCCcc---EEEEEeCCCCCCCE
Confidence 4567788999999999999999999999999999763211 11223567776 999999864 2358
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecC--CCcEEEEEeCCCcEEEEECCCCCcC-
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAV--NTSRLIASDTHGVVNIWDRRVGVLP- 247 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~- 247 (489)
|++++.| ++|++||++..... ....+.+|...|++++|+|+ +. +|++++.|+.|++||++.+...
T Consensus 74 l~s~s~D-~~v~iWd~~~~~~~----------~~~~~~~h~~~V~~v~~~p~~~g~-~lasgs~D~~i~lwd~~~~~~~~ 141 (316)
T 3bg1_A 74 LASCSYD-RKVIIWREENGTWE----------KSHEHAGHDSSVNSVCWAPHDYGL-ILACGSSDGAISLLTYTGEGQWE 141 (316)
T ss_dssp EEEEETT-SCEEEECCSSSCCC----------EEEEECCCSSCCCEEEECCTTTCS-CEEEECSSSCEEEEEECSSSCEE
T ss_pred EEEEECC-CEEEEEECCCCcce----------EEEEccCCCCceEEEEECCCCCCc-EEEEEcCCCCEEEEecCCCCCcc
Confidence 8899988 99999999532111 11223789999999999998 55 8999999999999999875321
Q ss_pred ceeeccCCCCceeEEEEeec-----------------CCEEEEEeCCCeEEEEEcCCC---cccceeecCCccCCCCeeE
Q 037120 248 SLELSTGSHGTLNSIQLHAE-----------------NQIIFAAGKHGSIYLWDLRGG---RTSAPFHNHKEVCHLPLTS 307 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~-----------------~~~l~~~~~dg~i~lwd~~~~---~~~~~~~~~~~~~~~~v~~ 307 (489)
....+.+|...|.+++|+|+ +.+|++|+.|++|++||++.. +.+..+.+|... |.+
T Consensus 142 ~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~----V~~ 217 (316)
T 3bg1_A 142 VKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW----VRD 217 (316)
T ss_dssp ECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSC----EEE
T ss_pred eeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCc----eEE
Confidence 23455689999999999997 468999999999999999865 345667777766 777
Q ss_pred EEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCC
Q 037120 308 LKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLR 387 (489)
Q Consensus 308 l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (489)
++|+|++.. .
T Consensus 218 v~~sp~~~~-----------------------------------------------------------~----------- 227 (316)
T 3bg1_A 218 VAWAPSIGL-----------------------------------------------------------P----------- 227 (316)
T ss_dssp EECCCCSSC-----------------------------------------------------------S-----------
T ss_pred EEecCCCCC-----------------------------------------------------------C-----------
Confidence 776664310 0
Q ss_pred cceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEecc
Q 037120 388 KPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGT 467 (489)
Q Consensus 388 ~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs 467 (489)
+.++++|+.|++|+|||+....... .....+. +|.+.|.+++|+|++.+||+|+
T Consensus 228 --------~~~las~s~D~~v~iw~~~~~~~~~------~~~~~~~------------~~~~~v~~v~~sp~g~~las~~ 281 (316)
T 3bg1_A 228 --------TSTIASCSQDGRVFIWTCDDASSNT------WSPKLLH------------KFNDVVWHVSWSITANILAVSG 281 (316)
T ss_dssp --------CCEEEEEETTCEEEEEECSSTTCCC------CBCCEEE------------ECSSCEEEEEECTTTCCEEEEE
T ss_pred --------CceEEEEcCCCeEEEEEccCccccc------hhhhhhh------------cCCCcEEEEEEcCCCCEEEEEc
Confidence 3578899999999999997630000 0112233 6889999999999999999999
Q ss_pred CcceeEEEecc
Q 037120 468 KNSSLLVVSQK 478 (489)
Q Consensus 468 ~dg~i~v~~~~ 478 (489)
.||.|+||...
T Consensus 282 ~D~~v~lw~~~ 292 (316)
T 3bg1_A 282 GDNKVTLWKES 292 (316)
T ss_dssp SSSCEEEEEEC
T ss_pred CCCeEEEEEEC
Confidence 99999999764
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-34 Score=282.07 Aligned_cols=298 Identities=15% Similarity=0.161 Sum_probs=200.3
Q ss_pred ccCCCceeEEEECC-CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 93 SFGKPGISALDFDC-KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 93 ~~~~~~V~~~~fs~-~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
.++...|+||+|+| ++++||+|+.||.|+|||+.+.... ....+.+|... |++|+|+|.+..+|
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~------------~~~~~~gH~~~---V~~l~f~p~~~~~l 180 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP------------TFIKGIGAGGS---ITGLKFNPLNTNQF 180 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC------------EEECCCSSSCC---CCEEEECSSCTTEE
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce------------eEEEccCCCCC---EEEEEEeCCCCCEE
Confidence 34566799999999 5679999999999999999873221 12223567777 99999999665699
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++.| |+|++||++.. .+.... ....+...+.+++|+|++. +|++|+.||.|++||++.. .+..
T Consensus 181 ~s~s~D-~~v~iwd~~~~------~~~~~~----~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~---~~~~ 245 (435)
T 4e54_B 181 YASSME-GTTRLQDFKGN------ILRVFA----SSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGK---ELWN 245 (435)
T ss_dssp EEECSS-SCEEEEETTSC------EEEEEE----CCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSC---BCCC
T ss_pred EEEeCC-CEEEEeeccCC------ceeEEe----ccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcc---eeEE
Confidence 999988 99999999421 111111 1144556788999999999 9999999999999999753 3446
Q ss_pred ccCCCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCCCccccee---ecCCccCCCCeeEEEeCCCCcceeeccccceee
Q 037120 252 STGSHGTLNSIQLHAENQ-IIFAAGKHGSIYLWDLRGGRTSAPF---HNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIV 327 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~-~l~~~~~dg~i~lwd~~~~~~~~~~---~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~ 327 (489)
+.+|...|++++|+|+++ ++++++.|++|++||+++++....+ .+|... |++++|+|+|.+++
T Consensus 246 ~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~----v~~~~~spdg~~l~--------- 312 (435)
T 4e54_B 246 LRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHP----VNAACFSPDGARLL--------- 312 (435)
T ss_dssp SBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSC----EEECCBCTTSSEEE---------
T ss_pred EecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeecccc----ccceeECCCCCeeE---------
Confidence 679999999999999987 5667788999999999987653333 345544 77776666665554
Q ss_pred ccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcE----------
Q 037120 328 SQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSI---------- 397 (489)
Q Consensus 328 ~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 397 (489)
+++.|+. ..+++...+............. ..........|.+.+..
T Consensus 313 -----------------s~~~D~~-i~iwd~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~d~~ 368 (435)
T 4e54_B 313 -----------------TTDQKSE-IRVYSASQWDCPLGLIPHPHRH------FQHLTPIKAAWHPRYNLIVVGRYPDPN 368 (435)
T ss_dssp -----------------EEESSSC-EEEEESSSSSSEEEECCCCCCC------CSSSCCCBCEECSSSSCEEEECCCCTT
T ss_pred -----------------EEcCCCE-EEEEECCCCccceEEecccccc------cccceeEEEEEcCCCCEEEEEEcCCCC
Confidence 3333322 1122222221111000000000 00000112234444333
Q ss_pred -EEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEE-EeeCCCCeEEeccCcceeEEE
Q 037120 398 -YAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTAC-VTHPLNNTIVAGTKNSSLLVV 475 (489)
Q Consensus 398 -~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v-a~~p~~~~i~sgs~dg~i~v~ 475 (489)
+++++..++.|++||..++ +.+..+. .+|...|.++ +|||++.+||+|+ |+.|+||
T Consensus 369 ~~~~~~~~~~~i~iwd~~~g----------~~~~~l~-----------~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW 426 (435)
T 4e54_B 369 FKSCTPYELRTIDVFDGNSG----------KMMCQLY-----------DPESSGISSLNEFNPMGDTLASAM-GYHILIW 426 (435)
T ss_dssp SCCSSTTCCCCEEEECSSSC----------CEEEEEC-----------CSSCCCCCCEEEECTTSSCEEEEC-SSEEEEC
T ss_pred eEEEEecCCCEEEEEECCCC----------cEEEEEe-----------CCCCCcEEEEEEECCCCCEEEEEc-CCcEEEE
Confidence 3344445678999999988 6655432 1688889887 6999999999887 7899999
Q ss_pred eccc
Q 037120 476 SQKQ 479 (489)
Q Consensus 476 ~~~~ 479 (489)
..+.
T Consensus 427 ~~~~ 430 (435)
T 4e54_B 427 SQQE 430 (435)
T ss_dssp CCC-
T ss_pred ECCc
Confidence 8664
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=283.02 Aligned_cols=341 Identities=13% Similarity=0.114 Sum_probs=234.9
Q ss_pred CceeEEEECCCCc-EEEEE----------ecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeC
Q 037120 97 PGISALDFDCKGI-YLVSA----------TRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNL 165 (489)
Q Consensus 97 ~~V~~~~fs~~g~-~la~g----------~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~ 165 (489)
..|.+++|+|+|+ +||+| +.||.|+|||+.+...... .....|... |.+++|+|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~------------~~~~~~~~~---v~~~~~s~ 77 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP------------IASLQVDSK---FNDLDWSH 77 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC------------SCCCCCSSC---EEEEEECS
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE------------EEEEecCCc---eEEEEECC
Confidence 3588999999997 99999 8899999999988442211 001224444 99999999
Q ss_pred CCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 037120 166 ANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGV 245 (489)
Q Consensus 166 ~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 245 (489)
++. +|++++.| |.|++||+....... .....+.+|...|++++|+|++..+|++++.|+.|++||+++++
T Consensus 78 ~~~-~l~~~~~d-g~v~vw~~~~~~~~~--------~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 147 (416)
T 2pm9_A 78 NNK-IIAGALDN-GSLELYSTNEANNAI--------NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCT 147 (416)
T ss_dssp SSS-CEEEEESS-SCEEEECCSSTTSCC--------CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTS
T ss_pred CCC-eEEEEccC-CeEEEeecccccccc--------cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCc
Confidence 986 77778777 999999995421110 12233478999999999999943399999999999999999875
Q ss_pred ------cC-ceeeccCCCCceeEEEEeec-CCEEEEEeCCCeEEEEEcCCCcccceeecC------CccCCCCeeEEEeC
Q 037120 246 ------LP-SLELSTGSHGTLNSIQLHAE-NQIIFAAGKHGSIYLWDLRGGRTSAPFHNH------KEVCHLPLTSLKLA 311 (489)
Q Consensus 246 ------~~-~~~~~~~h~~~v~~~~~~p~-~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~------~~~~~~~v~~l~~~ 311 (489)
.. .......|...|.+++|+|+ +.++++++.||.|++||+++++.+..+..+ ... |.+++|+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~----v~~~~~~ 223 (416)
T 2pm9_A 148 ESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQ----LSVVEWH 223 (416)
T ss_dssp SCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCC----EEEEEEC
T ss_pred cccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCc----eEEEEEC
Confidence 22 22234578999999999999 788899999999999999999888777765 444 9999999
Q ss_pred CCCc-ceeecc--------------------ccce-eeccceeEEEeCC-CCCeEEEEEecCCceEEEEeeccceeeecC
Q 037120 312 SMLE-KIGTLK--------------------AQSK-IVSQEIHSIDLDP-SCSYQLAFHLDDGWSGVLDVYNSRVSHVHC 368 (489)
Q Consensus 312 ~~~~-~i~~~~--------------------~~~~-~~~~~i~~~~~~p-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 368 (489)
|++. .+++.. .... .+...|.++.|+| ++.++++++.++. ..+++...+.......
T Consensus 224 ~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~-v~~wd~~~~~~~~~~~ 302 (416)
T 2pm9_A 224 PKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-VLLWNPESAEQLSQFP 302 (416)
T ss_dssp SSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE-EEEECSSSCCEEEEEE
T ss_pred CCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC-EEEeeCCCCccceeec
Confidence 9984 442211 1112 3567899999999 7777777766554 2344444333222111
Q ss_pred CCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeec--cCccc-ch--hhHhh---hhcc
Q 037120 369 PPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVD--YNEDI-ES--LSERT---KLKK 440 (489)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~--~~~~~-~~--~~~~~---~~~~ 440 (489)
. ....+..++|+|++..++++++.|+.|+|||+........... ..... .. +.... ....
T Consensus 303 ~------------~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (416)
T 2pm9_A 303 A------------RGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEK 370 (416)
T ss_dssp C------------SSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSC
T ss_pred C------------CCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccc
Confidence 1 0012345788888878999999999999999987721110000 00000 00 00000 0000
Q ss_pred -----cCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 441 -----ENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 441 -----~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
......|...|.+++|+|++.+|++|+.||.|.||....
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 371 PSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp CCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCC
T ss_pred cccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEecc
Confidence 001113778899999999999999999999999997653
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=272.19 Aligned_cols=295 Identities=12% Similarity=0.150 Sum_probs=206.4
Q ss_pred cccCCCceeEEEECCCC-cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDCKG-IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g-~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..+...|.+++|+|+| ++||+|+.||.|+|||+.+..... .....+|... |.+++|+|++...
T Consensus 69 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~------------~~~~~~h~~~---v~~~~~~~~~~~~ 133 (383)
T 3ei3_B 69 ASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS------------FIQGMGPGDA---ITGMKFNQFNTNQ 133 (383)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE------------EECCCSTTCB---EEEEEEETTEEEE
T ss_pred ccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce------------eeecCCcCCc---eeEEEeCCCCCCE
Confidence 45567889999999999 999999999999999998743332 1111345555 9999999955568
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
|++++.| +.|++||+.. ..+.... ...+|...|.+++|+|++. +|++++.|+.|++||++ ++ .+.
T Consensus 134 l~s~~~d-~~i~iwd~~~------~~~~~~~----~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~-~~--~~~ 198 (383)
T 3ei3_B 134 LFVSSIR-GATTLRDFSG------SVIQVFA----KTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLD-GH--EIF 198 (383)
T ss_dssp EEEEETT-TEEEEEETTS------CEEEEEE----CCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETT-SC--EEE
T ss_pred EEEEeCC-CEEEEEECCC------CceEEEe----ccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECC-CC--EEE
Confidence 8888888 9999999942 1111111 1245668999999999999 99999999999999995 33 556
Q ss_pred eccCCCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCCC----cccceeecCCccCCCCeeEEEeCC-CCcceeeccccc
Q 037120 251 LSTGSHGTLNSIQLHAENQ-IIFAAGKHGSIYLWDLRGG----RTSAPFHNHKEVCHLPLTSLKLAS-MLEKIGTLKAQS 324 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~-~l~~~~~dg~i~lwd~~~~----~~~~~~~~~~~~~~~~v~~l~~~~-~~~~i~~~~~~~ 324 (489)
.+..|...|.+++|+|+++ ++++++.|+.|++||++++ ..+..+ .|... |++++|+| ++..+++
T Consensus 199 ~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~----v~~~~~s~~~~~~l~~----- 268 (383)
T 3ei3_B 199 KEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKP----VNAAYFNPTDSTKLLT----- 268 (383)
T ss_dssp EEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSC----EEEEEECTTTSCEEEE-----
T ss_pred EeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCc----eEEEEEcCCCCCEEEE-----
Confidence 6778999999999999999 8999999999999999984 334444 45555 77777777 6665543
Q ss_pred eeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeee------------cCCCCCCcCCCCccccccCCCcceee
Q 037120 325 KIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHV------------HCPPPAWLSDSNNSADQLHLRKPSWL 392 (489)
Q Consensus 325 ~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (489)
++.++. ..+++...+..... ..+...|.+.. ..-..+|+
T Consensus 269 ---------------------~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-------~~~~~~~s 319 (383)
T 3ei3_B 269 ---------------------TDQRNE-IRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMY-------DLIVAGRY 319 (383)
T ss_dssp ---------------------EESSSE-EEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSS-------SEEEEECB
T ss_pred ---------------------EcCCCc-EEEEECCCCccccccccccccccccccceEEeccCCC-------CceEEEec
Confidence 222111 11222221111000 00001111110 01113344
Q ss_pred cCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCccee
Q 037120 393 STNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSL 472 (489)
Q Consensus 393 ~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i 472 (489)
|++.. +|+.|+.|+|||+.++ +.+..+... .|.+.+.+++|+|++.+|++|+ ||.|
T Consensus 320 ~dg~~---s~s~d~~i~iwd~~~~----------~~~~~l~~~----------~~~~~~~~~~~s~~g~~l~s~s-d~~i 375 (383)
T 3ei3_B 320 PDDQL---LLNDKRTIDIYDANSG----------GLVHQLRDP----------NAAGIISLNKFSPTGDVLASGM-GFNI 375 (383)
T ss_dssp CCTTT---CTTCCCCEEEEETTTC----------CEEEEECBT----------TBCSCCCEEEECTTSSEEEEEE-TTEE
T ss_pred CCccc---ccCCCCeEEEEecCCC----------ceeeeecCC----------CCCceEEEEEEecCccEEEEec-CCcE
Confidence 44433 6789999999999988 777666510 2567788889999999999997 9999
Q ss_pred EEEeccc
Q 037120 473 LVVSQKQ 479 (489)
Q Consensus 473 ~v~~~~~ 479 (489)
.||..+.
T Consensus 376 ~iw~~~~ 382 (383)
T 3ei3_B 376 LIWNRED 382 (383)
T ss_dssp EEEECC-
T ss_pred EEEecCC
Confidence 9998654
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=278.71 Aligned_cols=327 Identities=11% Similarity=0.114 Sum_probs=210.9
Q ss_pred ccCCCceeEEEECC-CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 93 SFGKPGISALDFDC-KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 93 ~~~~~~V~~~~fs~-~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
..|...|++++|+| ++++||+|+.||+|+|||+.+...... ...... ..|... |.+++|+|++. .|
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~--------~~~~~~-~~h~~~---v~~~~~~~~~~-~l 126 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEV--------YSSSLT-YDCSST---VTQITMIPNFD-AF 126 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCC--------CSCSEE-EECSSC---EEEEEECTTSS-EE
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcc--------cceeee-ccCCCC---EEEEEEeCCCC-EE
Confidence 44667899999999 999999999999999999876211110 000111 135555 99999999875 88
Q ss_pred EEEecCCCEEEEEEeccCC-CCCceeeeeceeeeeecCC--cccCeeEEE--EecCCCcEEEEEeCCCcEEEEECCCCCc
Q 037120 172 ACASTRSNVVSIYDIGYIS-DEPVEVLKTRRSVTVVGSD--VQKGLSDLA--FSAVNTSRLIASDTHGVVNIWDRRVGVL 246 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~--h~~~v~~~~--~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 246 (489)
++++.| |+|++||+.... ................+.. +...+.++. +++++. +|++++.|+.|++||+++++
T Consensus 127 ~s~s~d-g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~- 203 (437)
T 3gre_A 127 AVSSKD-GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS-LLVALTNLSRVIIFDIRTLE- 203 (437)
T ss_dssp EEEETT-SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE-EEEEEETTSEEEEEETTTCC-
T ss_pred EEEeCC-CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCe-
Confidence 888888 999999994211 1111111111111111222 667788888 557787 99999999999999999877
Q ss_pred CceeeccC--CCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceee-cCCccCCCCeeEEEeCCCCcceeecccc
Q 037120 247 PSLELSTG--SHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH-NHKEVCHLPLTSLKLASMLEKIGTLKAQ 323 (489)
Q Consensus 247 ~~~~~~~~--h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~-~~~~~~~~~v~~l~~~~~~~~i~~~~~~ 323 (489)
++..+.. |...|++++|+|++.++++|+.||.|++||+++++.+..+. .|... |++++|+|.
T Consensus 204 -~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~----v~~~~~~~~---------- 268 (437)
T 3gre_A 204 -RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAP----ITHVEVCQF---------- 268 (437)
T ss_dssp -EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEE----EEEEEECTT----------
T ss_pred -eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCc----eEEEEeccc----------
Confidence 5656666 88999999999999999999999999999999988888776 56655 999977653
Q ss_pred ceeeccceeEEEeCCCCCeEEEEEecCC---ce----EEEEeeccceeeecCCCCCCcCCCC--------ccccccCCCc
Q 037120 324 SKIVSQEIHSIDLDPSCSYQLAFHLDDG---WS----GVLDVYNSRVSHVHCPPPAWLSDSN--------NSADQLHLRK 388 (489)
Q Consensus 324 ~~~~~~~i~~~~~~p~~~~~~~~~~~~~---w~----~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 388 (489)
|+|++.++++++.++. |. ..+..+.++...+... .|.+... .......+..
T Consensus 269 ------------~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~v~~ 334 (437)
T 3gre_A 269 ------------YGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSME--HFLPIEKGLEELNFCGIRSLNALST 334 (437)
T ss_dssp ------------TCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGG--GGSCBCSSGGGCCCCCCCSGGGGCC
T ss_pred ------------cCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccc--eecccccccccceecccccCCceEE
Confidence 1222323332222221 10 1222222222111111 1221110 0001123455
Q ss_pred ceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHh-------------------------hhhcccCC
Q 037120 389 PSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSER-------------------------TKLKKENR 443 (489)
Q Consensus 389 ~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~ 443 (489)
++|. ++.++++|+.|+.|++||+.++ +....+... ........
T Consensus 335 l~~~--~~~~l~s~~~d~~i~~wd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (437)
T 3gre_A 335 ISVS--NDKILLTDEATSSIVMFSLNEL----------SSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDD 402 (437)
T ss_dssp EEEE--TTEEEEEEGGGTEEEEEETTCG----------GGCEEEECC--CCCEEEEEEEETTEEEEEEECC---------
T ss_pred EEEC--CceEEEecCCCCeEEEEECCCc----------ccceEEecccccCceEEEEEeecceEEEEEecccccccccCc
Confidence 6777 3589999999999999999887 222221100 00000111
Q ss_pred cccCCCceEEEEeeCC--CCeEEeccCcceeEEEe
Q 037120 444 FVPLSEGVTACVTHPL--NNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 444 ~~~h~~~V~~va~~p~--~~~i~sgs~dg~i~v~~ 476 (489)
+..|.+.|++++|+++ +.+|++|+.||.|.||.
T Consensus 403 ~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 403 SLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ----CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 2359999999999998 77999999999999994
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-34 Score=278.30 Aligned_cols=327 Identities=9% Similarity=0.028 Sum_probs=226.4
Q ss_pred CCCceeEEEECCCCc-EEEEEecCCeEEEEeC----CCccc------ccCCCCCCCCCcccccccccCCCCCCceeEEEe
Q 037120 95 GKPGISALDFDCKGI-YLVSATRSGCLTVHDF----ESLYY------QCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRW 163 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~-~la~g~~dg~i~vwd~----~~~~~------~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~ 163 (489)
+...|.+++|+|+|+ +||+|+.||.|+|||+ .+... ..... .....+....+|... |++++|
T Consensus 44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---v~~~~~ 116 (425)
T 1r5m_A 44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELR----HPFALSASSGKTTNQ---VTCLAW 116 (425)
T ss_dssp ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEE----CCCCCC------CBC---EEEEEE
T ss_pred ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccc----ccccccccccCCCCc---eEEEEE
Confidence 446799999999999 9999999999999999 66441 11000 001111111224444 999999
Q ss_pred eCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 037120 164 NLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRV 243 (489)
Q Consensus 164 ~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 243 (489)
+|++. +|++++.| |.|++||.. + . ....+.+|...|.+++|+|++. +|++++.|+.|++||+++
T Consensus 117 s~~~~-~l~~~~~d-g~i~i~~~~-~-----~-------~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~ 180 (425)
T 1r5m_A 117 SHDGN-SIVTGVEN-GELRLWNKT-G-----A-------LLNVLNFHRAPIVSVKWNKDGT-HIISMDVENVTILWNVIS 180 (425)
T ss_dssp CTTSS-EEEEEETT-SCEEEEETT-S-----C-------EEEEECCCCSCEEEEEECTTSS-EEEEEETTCCEEEEETTT
T ss_pred cCCCC-EEEEEeCC-CeEEEEeCC-C-----C-------eeeeccCCCccEEEEEECCCCC-EEEEEecCCeEEEEECCC
Confidence 99985 78888877 999999941 1 1 1122367999999999999999 999999999999999998
Q ss_pred CCcCceeeccCCCCc---------------eeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEE
Q 037120 244 GVLPSLELSTGSHGT---------------LNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSL 308 (489)
Q Consensus 244 ~~~~~~~~~~~h~~~---------------v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l 308 (489)
++ .+..+..+... +.+++|+|++ .+++++.||.|++||+++++.+..+..|... |.++
T Consensus 181 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~----i~~~ 253 (425)
T 1r5m_A 181 GT--VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHGP----ISVL 253 (425)
T ss_dssp TE--EEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSSC----EEEE
T ss_pred Cc--EEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCCc----eEEE
Confidence 76 45555555555 9999999985 5788889999999999999888888888877 9999
Q ss_pred EeCCCCcceeecc----------------ccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCC
Q 037120 309 KLASMLEKIGTLK----------------AQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPA 372 (489)
Q Consensus 309 ~~~~~~~~i~~~~----------------~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 372 (489)
+|+|++..+++.. .....+...|..+.|+|++ .+++++.++ ...+++...+........
T Consensus 254 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~-~i~i~d~~~~~~~~~~~~--- 328 (425)
T 1r5m_A 254 EFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDG-SVRLWSLKQNTLLALSIV--- 328 (425)
T ss_dssp EEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTS-EEEEEETTTTEEEEEEEC---
T ss_pred EECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCC-cEEEEECCCCcEeEeccc---
Confidence 9999998774321 1112346689999999999 666555444 334455444333222111
Q ss_pred CcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeec----------cCcccchhhHhhhhcccC
Q 037120 373 WLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVD----------YNEDIESLSERTKLKKEN 442 (489)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 442 (489)
. ...+..++|+|++ .++++|+.|+.|++||+.+......... ..+.+..+.
T Consensus 329 ---~------~~~i~~~~~s~~~-~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 389 (425)
T 1r5m_A 329 ---D------GVPIFAGRISQDG-QKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ--------- 389 (425)
T ss_dssp ---T------TCCEEEEEECTTS-SEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEEC---------
T ss_pred ---C------CccEEEEEEcCCC-CEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhc---------
Confidence 0 0123345677764 5677788999999999987610000000 000233333
Q ss_pred CcccCCC--ceEEEEeeCCCCeEEeccCcceeEEEecc
Q 037120 443 RFVPLSE--GVTACVTHPLNNTIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 443 ~~~~h~~--~V~~va~~p~~~~i~sgs~dg~i~v~~~~ 478 (489)
+|.. .|++++|+|++.+|++|+.||.|.||.-+
T Consensus 390 ---~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 390 ---SSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ---CTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred ---CcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 7866 99999999999999999999999999754
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-33 Score=268.26 Aligned_cols=311 Identities=15% Similarity=0.154 Sum_probs=233.2
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..|.+++|+|+|++++++..++.+.+|+...... ......|... |++++|+|++. ++++++
T Consensus 10 ~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~h~~~---v~~~~~~~~~~-~l~~~~- 70 (337)
T 1gxr_A 10 KPAYSFHVTADGQMQPVPFPPDALIGPGIPRHAR--------------QINTLNHGEV---VCAVTISNPTR-HVYTGG- 70 (337)
T ss_dssp EECCEEEECSSSCEEECCCCTTSSSSTTCCSEEE--------------EEEEECCSSC---CCEEEECSSSS-EEEEEC-
T ss_pred CceeEEEECCCCCEEEeecCCCcEeccccCCccc--------------cceeccCCCc---eEEEEEecCCc-EEEEcC-
Confidence 4589999999999999998877766665443111 1112346555 99999999986 777777
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~ 256 (489)
| |.|++||+...... .. ... ....+|...|.+++|+|+++ +|++++.|+.|++||+++++......+..|.
T Consensus 71 d-g~i~iw~~~~~~~~--~~---~~~--~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 141 (337)
T 1gxr_A 71 K-GCVKVWDISHPGNK--SP---VSQ--LDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELTSSA 141 (337)
T ss_dssp B-SEEEEEETTSTTCC--SC---SEE--EECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEECSS
T ss_pred C-CeEEEEECCCCCce--ee---eec--ccccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCCcceeeecccCC
Confidence 6 99999999543221 11 111 11247889999999999998 9999999999999999987644455566889
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeecccc-------------
Q 037120 257 GTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQ------------- 323 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~------------- 323 (489)
..|.+++|+|+++++++++.||.|++||+++++.+..+..|... |.+++|+|++..+.+....
T Consensus 142 ~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~ 217 (337)
T 1gxr_A 142 PACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG----ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQ 217 (337)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCc----eEEEEECCCCCEEEEEecCCcEEEEECCCCce
Confidence 99999999999999999999999999999999988899888877 9999999999877432111
Q ss_pred --ceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEe
Q 037120 324 --SKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVG 401 (489)
Q Consensus 324 --~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 401 (489)
...+...+..+.|+|++.++++.+.++. ..+++...+........ ...+..+.|+|++. ++++
T Consensus 218 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~-i~~~~~~~~~~~~~~~~-------------~~~v~~~~~~~~~~-~l~~ 282 (337)
T 1gxr_A 218 LQQHDFTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVNKPDKYQLHLH-------------ESCVLSLKFAYCGK-WFVS 282 (337)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEETTSSCEEEECCC-------------SSCEEEEEECTTSS-EEEE
T ss_pred EeeecCCCceEEEEECCCCCEEEEEcCCCc-EEEEECCCCCeEEEcCC-------------ccceeEEEECCCCC-EEEE
Confidence 1123567899999999998888776554 23444433332221110 02234567777655 6778
Q ss_pred ecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 402 SSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 402 gs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
++.|+.|++||+.++ +.+.. . .|...|++++|+|++..|++++.||.|.+|.-
T Consensus 283 ~~~dg~i~~~~~~~~----------~~~~~-~------------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 283 TGKDNLLNAWRTPYG----------ASIFQ-S------------KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EETTSEEEEEETTTC----------CEEEE-E------------ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred ecCCCcEEEEECCCC----------eEEEE-e------------cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 889999999999988 55432 2 58899999999999999999999999999963
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-33 Score=264.60 Aligned_cols=302 Identities=11% Similarity=0.072 Sum_probs=211.8
Q ss_pred ccccCCCceeEEEECCC-CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCC
Q 037120 91 RRSFGKPGISALDFDCK-GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQD 169 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~-g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~ 169 (489)
++..|...|++|+|+|+ +++||+|+.||+|+|||+.+..... ..+...+.+|... |.+++|+|++.
T Consensus 33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~---------~~~~~~l~~h~~~---V~~~~~s~dg~- 99 (340)
T 4aow_A 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNY---------GIPQRALRGHSHF---VSDVVISSDGQ- 99 (340)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCS---------EEEEEEECCCSSC---EEEEEECTTSS-
T ss_pred EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc---------ceeeEEEeCCCCC---EEEEEECCCCC-
Confidence 46778888999999998 6899999999999999998733221 1122234567766 99999999986
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
+|++++.| +.|++|+.... ... . ....+...+..+.+++++. .|++++.|+.+++||+...... .
T Consensus 100 ~l~s~~~d-~~i~~~~~~~~-----~~~---~----~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~-~ 164 (340)
T 4aow_A 100 FALSGSWD-GTLRLWDLTTG-----TTT---R----RFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKY-T 164 (340)
T ss_dssp EEEEEETT-SEEEEEETTTT-----EEE---E----EEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEE-E
T ss_pred EEEEEccc-ccceEEeeccc-----cee---e----eecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceE-E
Confidence 78888888 99999999322 111 1 1144667888999999998 9999999999999999865422 3
Q ss_pred eeccCCCCceeEEEEeecC--CEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceee
Q 037120 250 ELSTGSHGTLNSIQLHAEN--QIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIV 327 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~p~~--~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~ 327 (489)
....+|...+.+++|++++ .++++++.|+.|++||+++++.+..+.+|... |++++|+|++.++++......
T Consensus 165 ~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~----v~~~~~s~~~~~l~s~s~Dg~-- 238 (340)
T 4aow_A 165 VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY----LNTVTVSPDGSLCASGGKDGQ-- 238 (340)
T ss_dssp ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEEECTTSSEEEEEETTCE--
T ss_pred EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCc----EEEEEECCCCCEEEEEeCCCe--
Confidence 3455889999999998865 46788888999999999999988888888877 999998888877654221111
Q ss_pred ccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCc
Q 037120 328 SQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHG 407 (489)
Q Consensus 328 ~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~ 407 (489)
+ .+++............ . ..+..++|.|++ ++++++.|+.
T Consensus 239 ---------------i----------~iwd~~~~~~~~~~~~------~-------~~v~~~~~~~~~--~~~~~~~d~~ 278 (340)
T 4aow_A 239 ---------------A----------MLWDLNEGKHLYTLDG------G-------DIINALCFSPNR--YWLCAATGPS 278 (340)
T ss_dssp ---------------E----------EEEETTTTEEEEEEEC------S-------SCEEEEEECSSS--SEEEEEETTE
T ss_pred ---------------E----------EEEEeccCceeeeecC------C-------ceEEeeecCCCC--ceeeccCCCE
Confidence 1 1111111111110000 0 001223444443 3445668999
Q ss_pred EEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 408 IHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 408 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
|+|||+... ..+..+.. ........+|...|++++|+|++++|++|+.||.|+||.-+.
T Consensus 279 i~iwd~~~~----------~~~~~~~~---~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 279 IKIWDLEGK----------IIVDELKQ---EVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp EEEEETTTT----------EEEEEECC---C-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred EEEEECCCC----------eEEEeccc---cceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 999999876 33332220 000011237999999999999999999999999999997553
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-33 Score=288.66 Aligned_cols=304 Identities=13% Similarity=0.105 Sum_probs=211.3
Q ss_pred cccCCCceeEEEECCCC-cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDCKG-IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g-~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..|...|++++|+|++ ++|++|+.||+|+|||+....... ......+.+|... |.+++|+|++. +
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~---------~~~~~~~~~h~~~---v~~v~~s~~g~-~ 444 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY---------GVAQRRLTGHSHF---VEDVVLSSDGQ-F 444 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS---------CEEEEEEECCSSC---EEEEEECTTSS-E
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc---------ccccceecCCCCc---EEEEEECCCCC-E
Confidence 56788889999999875 799999999999999997632111 1112234567777 99999999985 8
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-ce
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-SL 249 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~ 249 (489)
|++++.| |+|+|||+... .. ...+.+|...|.+++|+|++. +|++++.|++|++||+...... ..
T Consensus 445 l~sgs~D-g~v~vwd~~~~-----~~-------~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~ 510 (694)
T 3dm0_A 445 ALSGSWD-GELRLWDLAAG-----VS-------TRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGECKYTIS 510 (694)
T ss_dssp EEEEETT-SEEEEEETTTT-----EE-------EEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEEC
T ss_pred EEEEeCC-CcEEEEECCCC-----cc-------eeEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCcceeec
Confidence 8888888 99999999432 11 122378999999999999999 9999999999999998754311 11
Q ss_pred eeccCCCCceeEEEEeecC--CEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceee
Q 037120 250 ELSTGSHGTLNSIQLHAEN--QIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIV 327 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~p~~--~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~ 327 (489)
....+|...|.+++|+|++ ..+++++.|++|++||+++++....+.+|... |++++|+|++..+++
T Consensus 511 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~----v~~v~~spdg~~l~s-------- 578 (694)
T 3dm0_A 511 EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGY----VSTVAVSPDGSLCAS-------- 578 (694)
T ss_dssp SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSC----EEEEEECTTSSEEEE--------
T ss_pred cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCC----EEEEEEeCCCCEEEE--------
Confidence 1224788999999999987 57999999999999999999888888888877 888888887766654
Q ss_pred ccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCc
Q 037120 328 SQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHG 407 (489)
Q Consensus 328 ~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~ 407 (489)
++.|+. ..++++..+....... .. ..+..++|+|++. +++++ .|+.
T Consensus 579 ------------------g~~Dg~-i~iwd~~~~~~~~~~~------~~-------~~v~~~~~sp~~~-~l~~~-~~~~ 624 (694)
T 3dm0_A 579 ------------------GGKDGV-VLLWDLAEGKKLYSLE------AN-------SVIHALCFSPNRY-WLCAA-TEHG 624 (694)
T ss_dssp ------------------EETTSB-CEEEETTTTEEEECCB------CS-------SCEEEEEECSSSS-EEEEE-ETTE
T ss_pred ------------------EeCCCe-EEEEECCCCceEEEec------CC-------CcEEEEEEcCCCc-EEEEE-cCCC
Confidence 222211 1233333332211100 00 1123456777644 44444 5677
Q ss_pred EEEEeccCCCCCCeeeccCcccchhhHhhhh-------cccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecc
Q 037120 408 IHLLDFFPGSSSPSHVDYNEDIESLSERTKL-------KKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 408 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~ 478 (489)
|+|||+.++ +.+..+...... ........+...|++++|+|++.+|++|+.||.|+||.-.
T Consensus 625 i~iwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 625 IKIWDLESK----------SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEEETTTT----------EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EEEEECCCC----------CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 999999887 443332200000 0000001233358999999999999999999999999754
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-32 Score=260.30 Aligned_cols=290 Identities=11% Similarity=0.109 Sum_probs=214.0
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|...|++++|+|+|++||+|+.||.|+|||+.+..... .+.+|... |.+++|+|++. .|
T Consensus 28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~--------------~~~~h~~~---v~~~~~~~~~~-~l 89 (369)
T 3zwl_B 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG--------------TLDGHTGT---IWSIDVDCFTK-YC 89 (369)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE--------------EECCCSSC---EEEEEECTTSS-EE
T ss_pred EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh--------------hhhhcCCc---EEEEEEcCCCC-EE
Confidence 55677889999999999999999999999999998744433 22445555 99999999875 77
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC-----CcEEEEECCCCCc
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH-----GVVNIWDRRVGVL 246 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~ 246 (489)
++++.| |.|++||+... ..+. .+ . |...|.+++|+|++. .|++++.+ +.|++||++....
T Consensus 90 ~s~~~d-g~i~iwd~~~~-----~~~~---~~----~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~ 154 (369)
T 3zwl_B 90 VTGSAD-YSIKLWDVSNG-----QCVA---TW----K-SPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIERDSA 154 (369)
T ss_dssp EEEETT-TEEEEEETTTC-----CEEE---EE----E-CSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEECTT
T ss_pred EEEeCC-CeEEEEECCCC-----cEEE---Ee----e-cCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecCCcc
Confidence 888887 99999999432 1111 11 2 667999999999999 99999988 9999999987642
Q ss_pred C---------ceeeccCCCC--ceeEEEEeecCCEEEEEeCCCeEEEEEcCC-CcccceeecCCccCCCCeeEEEeCCCC
Q 037120 247 P---------SLELSTGSHG--TLNSIQLHAENQIIFAAGKHGSIYLWDLRG-GRTSAPFHNHKEVCHLPLTSLKLASML 314 (489)
Q Consensus 247 ~---------~~~~~~~h~~--~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~-~~~~~~~~~~~~~~~~~v~~l~~~~~~ 314 (489)
. .......|.. .+.+++|+|+++++++++.||.|++||+++ ++.+..+..|... |.+++|+|++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----v~~~~~~~~~ 230 (369)
T 3zwl_B 155 THELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKS----ISDMQFSPDL 230 (369)
T ss_dssp TCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSC----EEEEEECTTS
T ss_pred ceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCc----eeEEEECCCC
Confidence 1 1223335555 899999999999999999999999999998 6668888888766 8888888888
Q ss_pred cceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecC
Q 037120 315 EKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLST 394 (489)
Q Consensus 315 ~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (489)
..+++..... .+ .+++...+........ . .....++|.|+
T Consensus 231 ~~l~~~~~d~-----------------~i----------~v~d~~~~~~~~~~~~------~-------~~~~~~~~~~~ 270 (369)
T 3zwl_B 231 TYFITSSRDT-----------------NS----------FLVDVSTLQVLKKYET------D-------CPLNTAVITPL 270 (369)
T ss_dssp SEEEEEETTS-----------------EE----------EEEETTTCCEEEEEEC------S-------SCEEEEEECSS
T ss_pred CEEEEecCCc-----------------eE----------EEEECCCCceeeeecC------C-------CCceeEEecCC
Confidence 7665421111 11 1122221111111000 0 11223455565
Q ss_pred CcEEEEeecCCC--------------cEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCC
Q 037120 395 NSIYAVGSSSDH--------------GIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLN 460 (489)
Q Consensus 395 ~~~~l~sgs~d~--------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~ 460 (489)
+..+++ ++.++ .+++||+.++ +.+..+. +|.+.|++++|+|++
T Consensus 271 ~~~l~~-~~~~~~~~~~~~~~~~~~~~i~~~d~~~~----------~~~~~~~------------~~~~~v~~~~~s~~~ 327 (369)
T 3zwl_B 271 KEFIIL-GGGQEAKDVTTTSANEGKFEARFYHKIFE----------EEIGRVQ------------GHFGPLNTVAISPQG 327 (369)
T ss_dssp SSEEEE-EECCC-------------CEEEEEETTTC----------CEEEEEE------------CCSSCEEEEEECTTS
T ss_pred CceEEE-eecCCCceEEEEecCCCcceeEEEecCCC----------cchhhee------------cccCcEEEEEECCCC
Confidence 554444 44454 8999999988 7777777 899999999999999
Q ss_pred CeEEeccCcceeEEEeccccc
Q 037120 461 NTIVAGTKNSSLLVVSQKQQC 481 (489)
Q Consensus 461 ~~i~sgs~dg~i~v~~~~~~~ 481 (489)
.+|++|+.||.|.||..+...
T Consensus 328 ~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 328 TSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp SEEEEEETTSEEEEEEECHHH
T ss_pred CEEEEEcCCCeEEEEECcccc
Confidence 999999999999999877643
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-33 Score=274.15 Aligned_cols=306 Identities=14% Similarity=0.113 Sum_probs=230.9
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
.+++++|+|+|++|++|+.||.|++||+.+...... .. .| . .+....|++++. +|++++.|
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~--------~~------~~--~--~~~~~~~~~~~~-~l~~~~~d 118 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM--------LK------RA--D--YTAVDTAKLQMR-RFILGTTE 118 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTT--------SC------SC--C--EEEEEEECSSSC-EEEEEETT
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceeeE--------Ee------cC--C--ceEEEEEecCCC-EEEEEECC
Confidence 366899999999999999999999999988544331 11 11 1 144557788875 78888888
Q ss_pred CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCC
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHG 257 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~ 257 (489)
|.|++||+... . ....+.+|...|++++|+|++. +|++++.|+.|++||+++++ .+..+.+|..
T Consensus 119 -g~i~iwd~~~~-----~-------~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~--~~~~~~~h~~ 182 (420)
T 3vl1_A 119 -GDIKVLDSNFN-----L-------QREIDQAHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGS--NPRTLIGHRA 182 (420)
T ss_dssp -SCEEEECTTSC-----E-------EEEETTSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCC--CCEEEECCSS
T ss_pred -CCEEEEeCCCc-----c-------eeeecccccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCc--CceEEcCCCC
Confidence 99999998321 1 1222468999999999999999 99999999999999999877 5566779999
Q ss_pred ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeC
Q 037120 258 TLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLD 337 (489)
Q Consensus 258 ~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~ 337 (489)
.|.+++|+|+++++++++.||.|++||+++++.+..+..+... ..+|.+++|.+.+.... .......+..+.|+
T Consensus 183 ~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~-----~~~~~~~v~~~~~s 256 (420)
T 3vl1_A 183 TVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENP-HDGVNSIALFVGTDRQL-----HEISTSKKNNLEFG 256 (420)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBT-TCCEEEEEEEECCCSSC-----GGGCCCCCCTTCSS
T ss_pred cEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCC-CCCccEEEEecCCccee-----eecccCcccceEEc
Confidence 9999999999999999999999999999999988888754321 23499999988765432 12345677889999
Q ss_pred CCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCC
Q 037120 338 PSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGS 417 (489)
Q Consensus 338 p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~ 417 (489)
|++.++++++.++. ..+++...+........ . ....+..++|+|++..++++|+.|+.|++||+.++
T Consensus 257 ~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~--~---------~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~- 323 (420)
T 3vl1_A 257 TYGKYVIAGHVSGV-ITVHNVFSKEQTIQLPS--K---------FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSP- 323 (420)
T ss_dssp CTTEEEEEEETTSC-EEEEETTTCCEEEEECC--T---------TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCT-
T ss_pred CCCCEEEEEcCCCe-EEEEECCCCceeEEccc--c---------cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCC-
Confidence 99999888776654 33555444332221110 0 00123457888888778999999999999999876
Q ss_pred CCCeeeccCcc-cchhhHhhhhcccCCccc-CCCceEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 418 SSPSHVDYNED-IESLSERTKLKKENRFVP-LSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 418 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
+. +..+. + |...|.++.+ |++.+|++|+.||.|.||....
T Consensus 324 ---------~~~~~~~~------------~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~ 365 (420)
T 3vl1_A 324 ---------ECPVGEFL------------INEGTPINNVYF-AAGALFVSSGFDTSIKLDIISD 365 (420)
T ss_dssp ---------TSCSEEEE------------ESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECC
T ss_pred ---------cCchhhhh------------ccCCCCceEEEe-CCCCEEEEecCCccEEEEeccC
Confidence 33 34444 4 6777888855 5778999999999999998655
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=271.33 Aligned_cols=349 Identities=14% Similarity=0.186 Sum_probs=205.2
Q ss_pred CCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCC------------CCCCceeEEEe
Q 037120 96 KPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHI------------PLPQQLDAVRW 163 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~------------~~~~~V~~v~~ 163 (489)
...|.+++|+|+|++||+|+.||.|+|||+.+........ .+.......+.+|. .. |.+++|
T Consensus 28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~---~~~~~~~~~~~~h~~~~~~~~~~~~~~~---V~~l~~ 101 (447)
T 3dw8_B 28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHS---RGEYNVYSTFQSHEPEFDYLKSLEIEEK---INKIRW 101 (447)
T ss_dssp GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCC---CCCEEEEEEEECCCCEEEGGGTEEECCC---CCEEEE
T ss_pred cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCccc---ccceeEecccccccccccccccccccCc---eEEEEE
Confidence 3569999999999999999999999999998744211000 00112223345565 44 999999
Q ss_pred eCCCC-CEEEEEecCCCEEEEEEeccCCCCC----------------------ceeeee------ceeeeeecCCcccCe
Q 037120 164 NLANQ-DEVACASTRSNVVSIYDIGYISDEP----------------------VEVLKT------RRSVTVVGSDVQKGL 214 (489)
Q Consensus 164 ~~~~~-~~l~s~~~d~g~i~vwd~~~~~~~~----------------------~~~~~~------~~~~~~~~~~h~~~v 214 (489)
+|++. ..|++++.| ++|++||+....... ...+.+ .........+|...|
T Consensus 102 ~~~~~~~~l~s~s~d-~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 180 (447)
T 3dw8_B 102 LPQKNAAQFLLSTND-KTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHI 180 (447)
T ss_dssp CCCCSSSEEEEEECS-SCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCC
T ss_pred cCCCCcceEEEeCCC-CeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcce
Confidence 99973 477788877 999999995421100 000000 000001136799999
Q ss_pred eEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee-------eccCCCCceeEEEEeecC-CEEEEEeCCCeEEEEEcC
Q 037120 215 SDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE-------LSTGSHGTLNSIQLHAEN-QIIFAAGKHGSIYLWDLR 286 (489)
Q Consensus 215 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~~~~h~~~v~~~~~~p~~-~~l~~~~~dg~i~lwd~~ 286 (489)
++++|+|++. +|++| .|+.|++||+++... ++. .+.+|...|++++|+|++ .++++++.||.|++||++
T Consensus 181 ~~~~~~~~~~-~l~s~-~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~ 257 (447)
T 3dw8_B 181 NSISINSDYE-TYLSA-DDLRINLWHLEITDR-SFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMR 257 (447)
T ss_dssp CEEEECTTSS-EEEEE-CSSEEEEEETTEEEE-EEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred EEEEEcCCCC-EEEEe-CCCeEEEEECCCCCc-eeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECc
Confidence 9999999998 89998 799999999985332 232 255899999999999998 999999999999999999
Q ss_pred CCcc----cceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeec-c
Q 037120 287 GGRT----SAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYN-S 361 (489)
Q Consensus 287 ~~~~----~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~-~ 361 (489)
+++. +..+..|.... .......+...|.+++|+|++.++++++. +-..++++.. +
T Consensus 258 ~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~--~~v~iwd~~~~~ 317 (447)
T 3dw8_B 258 ASALCDRHSKLFEEPEDPS------------------NRSFFSEIISSISDVKFSHSGRYMMTRDY--LSVKVWDLNMEN 317 (447)
T ss_dssp TCSSSCTTCEEECCC-----------------------CCHHHHHTTCEEEEEECTTSSEEEEEES--SEEEEEETTCCS
T ss_pred CCccccceeeEeccCCCcc------------------ccccccccCceEEEEEECCCCCEEEEeeC--CeEEEEeCCCCc
Confidence 9876 56666665310 00001112234444555555554444333 2123333332 2
Q ss_pred ceeeecCCCCCCcCCCC---ccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccch----hh-
Q 037120 362 RVSHVHCPPPAWLSDSN---NSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIES----LS- 433 (489)
Q Consensus 362 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~----~~- 433 (489)
................. ..........++|+|++. ++++|+.|+.|+|||+.++.. ..+...+.... ..
T Consensus 318 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~-~l~s~s~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~ 394 (447)
T 3dw8_B 318 RPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS-VVMTGSYNNFFRMFDRNTKRD--ITLEASRENNKPRTVLKP 394 (447)
T ss_dssp SCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS-EEEEECSTTEEEEEETTTCCE--EEEECCSTTCCTTCBCCC
T ss_pred cccceeeccccccccccccccccccccceEEEECCCCC-EEEEeccCCEEEEEEcCCCcc--eeeeecccccccccccCC
Confidence 11111100000000000 000000112367888755 568899999999999987721 00000000000 00
Q ss_pred ----Hhhh---hcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecc
Q 037120 434 ----ERTK---LKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 434 ----~~~~---~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~ 478 (489)
.... .......+.+...|.+++|||++++||+++.++ +.+|+.|
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 395 RKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred ccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 0000 000001235678899999999999999999876 7777665
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-33 Score=259.13 Aligned_cols=248 Identities=12% Similarity=0.168 Sum_probs=186.6
Q ss_pred cccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEE
Q 037120 148 HLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRL 227 (489)
Q Consensus 148 ~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 227 (489)
+.+|... |.+++|+|+++ +|++++.| |+|++||+... .. ...+..|...|.+++|+|+++ +|
T Consensus 9 ~~~h~~~---V~~~~fsp~~~-~l~s~~~d-g~v~lWd~~~~-----~~-------~~~~~~~~~~v~~~~~~~~~~-~l 70 (304)
T 2ynn_A 9 FSNRSDR---VKGIDFHPTEP-WVLTTLYS-GRVELWNYETQ-----VE-------VRSIQVTETPVRAGKFIARKN-WI 70 (304)
T ss_dssp EEEECSC---EEEEEECSSSS-EEEEEETT-SEEEEEETTTT-----EE-------EEEEECCSSCEEEEEEEGGGT-EE
T ss_pred ecCCCCc---eEEEEECCCCC-EEEEEcCC-CcEEEEECCCC-----ce-------eEEeeccCCcEEEEEEeCCCC-EE
Confidence 4567776 99999999986 78888888 99999999322 11 122367888999999999999 99
Q ss_pred EEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-cceeecCCccCCCCee
Q 037120 228 IASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLT 306 (489)
Q Consensus 228 ~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~ 306 (489)
++|+.|++|++||+++++ ++..+.+|...|.+++|+|+++++++|+.||+|++||++++.. ...+.+|... |.
T Consensus 71 ~s~s~d~~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~----v~ 144 (304)
T 2ynn_A 71 IVGSDDFRIRVFNYNTGE--KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHF----VM 144 (304)
T ss_dssp EEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSC----EE
T ss_pred EEECCCCEEEEEECCCCc--EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCc----EE
Confidence 999999999999999887 6667789999999999999999999999999999999998744 5667788766 88
Q ss_pred EEEeCCC-CcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccC
Q 037120 307 SLKLASM-LEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLH 385 (489)
Q Consensus 307 ~l~~~~~-~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (489)
+++|+|+ +..+++ ++.|+. ..++++..+........ . ....
T Consensus 145 ~v~~~p~~~~~l~s--------------------------gs~D~~-v~iwd~~~~~~~~~~~~------~-----~~~~ 186 (304)
T 2ynn_A 145 CVAFNPKDPSTFAS--------------------------GCLDRT-VKVWSLGQSTPNFTLTT------G-----QERG 186 (304)
T ss_dssp EEEECTTCTTEEEE--------------------------EETTSE-EEEEETTCSSCSEEEEC------C-----CTTC
T ss_pred EEEECCCCCCEEEE--------------------------EeCCCe-EEEEECCCCCccceecc------C-----CcCc
Confidence 8888873 444443 221111 11222211110000000 0 0001
Q ss_pred CCcceeecC-CcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEE
Q 037120 386 LRKPSWLST-NSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIV 464 (489)
Q Consensus 386 ~~~~~~~~~-~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~ 464 (489)
+....|.|. ++.++++|+.|+.|+|||+.++ +.+..+. +|...|.+++|+|+++.|+
T Consensus 187 v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~----------~~~~~~~------------~h~~~v~~~~~~p~~~~l~ 244 (304)
T 2ynn_A 187 VNYVDYYPLPDKPYMITASDDLTIKIWDYQTK----------SCVATLE------------GHMSNVSFAVFHPTLPIII 244 (304)
T ss_dssp EEEEEECCSTTCCEEEEEETTSEEEEEETTTT----------EEEEEEE------------CCSSCEEEEEECSSSSEEE
T ss_pred EEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC----------ccceeeC------------CCCCCEEEEEECCCCCEEE
Confidence 112233332 3678999999999999999988 7777777 9999999999999999999
Q ss_pred eccCcceeEEEeccc
Q 037120 465 AGTKNSSLLVVSQKQ 479 (489)
Q Consensus 465 sgs~dg~i~v~~~~~ 479 (489)
+|+.||+|+||..+.
T Consensus 245 s~s~Dg~i~iWd~~~ 259 (304)
T 2ynn_A 245 SGSEDGTLKIWNSST 259 (304)
T ss_dssp EEETTSCEEEEETTT
T ss_pred EEcCCCeEEEEECCC
Confidence 999999999998654
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-32 Score=260.42 Aligned_cols=322 Identities=9% Similarity=0.048 Sum_probs=214.0
Q ss_pred cCCCceeEEEECCC----CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCC-
Q 037120 94 FGKPGISALDFDCK----GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQ- 168 (489)
Q Consensus 94 ~~~~~V~~~~fs~~----g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~- 168 (489)
.|...|.+++|+|+ ...+++++.++.|+|||+.+...... +..+. ...|... |.+++|+|++.
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~--------~~~~~-~~~~~~~---v~~~~~~~~~~~ 83 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL--------LQSYV-DADADEN---FYTCAWTYDSNT 83 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE--------EEEEE-CSCTTCC---EEEEEEEECTTT
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe--------eeecc-ccCCCCc---EEEEEeccCCCC
Confidence 46678999999984 45666777777999999987544331 11111 0113344 99999999843
Q ss_pred --CEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEec-CCCcEEEEEeCCCcEEEEECCCCC
Q 037120 169 --DEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSA-VNTSRLIASDTHGVVNIWDRRVGV 245 (489)
Q Consensus 169 --~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~s~dg~i~iwd~~~~~ 245 (489)
.+|++++.| |.|++||+... .. ...+.+|...|++++|+| ++. +|++++.||.|++||+++++
T Consensus 84 ~~~~l~~~~~d-g~i~v~d~~~~-----~~-------~~~~~~~~~~i~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~ 149 (366)
T 3k26_A 84 SHPLLAVAGSR-GIIRIINPITM-----QC-------IKHYVGHGNAINELKFHPRDPN-LLLSVSKDHALRLWNIQTDT 149 (366)
T ss_dssp CCEEEEEEETT-CEEEEECTTTC-----CE-------EEEEESCCSCEEEEEECSSCTT-EEEEEETTSCEEEEETTTTE
T ss_pred CCCEEEEecCC-CEEEEEEchhc-----eE-------eeeecCCCCcEEEEEECCCCCC-EEEEEeCCCeEEEEEeecCe
Confidence 378888888 99999999432 11 122367999999999999 666 99999999999999999876
Q ss_pred cCceeec---cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceee---
Q 037120 246 LPSLELS---TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGT--- 319 (489)
Q Consensus 246 ~~~~~~~---~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~--- 319 (489)
.+..+ ..|...|.+++|+|+++++++++.||.|++||+++++.+..+..+ +.|+|++..+..
T Consensus 150 --~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~ 217 (366)
T 3k26_A 150 --LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKES----------YDYNPNKTNRPFISQ 217 (366)
T ss_dssp --EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHH----------HTCCGGGCSSCCCCE
T ss_pred --EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCcccccccee----------EEecCCCCcccccce
Confidence 44444 589999999999999999999999999999999987765544321 112222221110
Q ss_pred -----ccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCC--cCCCCccccccCCCcceee
Q 037120 320 -----LKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAW--LSDSNNSADQLHLRKPSWL 392 (489)
Q Consensus 320 -----~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 392 (489)
.......+...|.++.|+ +.++++++.++. ..+++...+............ ............+..++|+
T Consensus 218 ~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 294 (366)
T 3k26_A 218 KIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENA-IVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFS 294 (366)
T ss_dssp EECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSE-EEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCE
T ss_pred eeccCccccccCCcceEEEEEEc--CCEEEEEecCCE-EEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEc
Confidence 001112255667777776 445555544332 334444333210000000000 0000000011234456777
Q ss_pred cCC-cEEEEeecCCCcEEEEeccCCCCCCeeeccCcccc----hhhHhhhhcccCCcccC--CCceEEEEeeCCCCeEEe
Q 037120 393 STN-SIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIE----SLSERTKLKKENRFVPL--SEGVTACVTHPLNNTIVA 465 (489)
Q Consensus 393 ~~~-~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~h--~~~V~~va~~p~~~~i~s 465 (489)
|+. +.++++|+.|+.|++||+.++ +... .+. +| ...|++++|+|++.+|++
T Consensus 295 ~~~~~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~~~~------------~~~~~~~v~~~~~s~~~~~l~s 352 (366)
T 3k26_A 295 MDFWQKMLALGNQVGKLYVWDLEVE----------DPHKAKCTTLT------------HHKCGAAIRQTSFSRDSSILIA 352 (366)
T ss_dssp ECTTSSEEEEECTTSCEEEEECCSS----------SGGGCEEEEEC------------CTTCCSCEEEEEECTTSSEEEE
T ss_pred CCCCCcEEEEEecCCcEEEEECCCC----------CCccccceEEc------------ccccCCceEEEEeCCCCCeEEE
Confidence 772 667888899999999999887 4332 333 55 799999999999999999
Q ss_pred ccCcceeEEEecc
Q 037120 466 GTKNSSLLVVSQK 478 (489)
Q Consensus 466 gs~dg~i~v~~~~ 478 (489)
|+.||.|.||...
T Consensus 353 ~~~dg~i~iwd~~ 365 (366)
T 3k26_A 353 VCDDASIWRWDRL 365 (366)
T ss_dssp EETTSEEEEEEC-
T ss_pred EeCCCEEEEEEec
Confidence 9999999999754
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-31 Score=257.98 Aligned_cols=324 Identities=15% Similarity=0.190 Sum_probs=221.6
Q ss_pred cccCCCceeEEEECC-CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDC-KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~-~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..|...|.+++|+| ++++||+|+.||.|+|||+.+............ .........+|... |.+++|+|++..+
T Consensus 39 ~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---v~~~~~~~~~~~~ 114 (408)
T 4a11_B 39 ERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAV-CSIGRDHPDVHRYS---VETVQWYPHDTGM 114 (408)
T ss_dssp CCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEE-EEECTTCTTCCSSC---EEEEEECTTCTTC
T ss_pred eeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEecccc-ccccccccccCCCc---EEEEEEccCCCcE
Confidence 445677899999999 999999999999999999998543331000000 00000001235555 9999999966668
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCC--cEEEEEeCCCcEEEEECCCCCcCc
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT--SRLIASDTHGVVNIWDRRVGVLPS 248 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~~ 248 (489)
+++++.| |.|++||+... ..... ..+...+.++.|++.+. .++++++.|+.|++||+++++ .
T Consensus 115 l~s~~~d-~~i~iwd~~~~-----~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--~ 178 (408)
T 4a11_B 115 FTSSSFD-KTLKVWDTNTL-----QTADV--------FNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS--C 178 (408)
T ss_dssp EEEEETT-SEEEEEETTTT-----EEEEE--------EECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSC--C
T ss_pred EEEEeCC-CeEEEeeCCCC-----cccee--------ccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc--e
Confidence 8888888 99999999432 22111 22566899999998543 289999999999999999876 5
Q ss_pred eeeccCCCCceeEEEEeecCCE-EEEEeCCCeEEEEEcCCCcc-cceeecCCccCCCCeeEEEeCCCCcceeecccccee
Q 037120 249 LELSTGSHGTLNSIQLHAENQI-IFAAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKI 326 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~~~~-l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~ 326 (489)
+..+..|...|.+++|+|++++ +++++.||.|++||++++.. +..+..+... ...........
T Consensus 179 ~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~ 243 (408)
T 4a11_B 179 SHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGK---------------KSQAVESANTA 243 (408)
T ss_dssp CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTC---------------SCCCTTTSSCS
T ss_pred eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccc---------------cceeecccccc
Confidence 6667789999999999999995 78888999999999998763 4444333211 00011122234
Q ss_pred eccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCC
Q 037120 327 VSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDH 406 (489)
Q Consensus 327 ~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~ 406 (489)
+...|..++|+|++.++++++.++. ..+++...+...........-.. .......+.......++.++.|+
T Consensus 244 ~~~~v~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 314 (408)
T 4a11_B 244 HNGKVNGLCFTSDGLHLLTVGTDNR-MRLWNSSNGENTLVNYGKVCNNS--------KKGLKFTVSCGCSSEFVFVPYGS 314 (408)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCBCCCCCCCCCCCC--------SSCCCCEECCSSSSCEEEEEETT
T ss_pred ccCceeEEEEcCCCCEEEEecCCCe-EEEEECCCCccceeccccccccc--------cccceeEEecCCCceEEEEecCC
Confidence 5566777888888877777665554 33555544433221111000000 00011222233344555667899
Q ss_pred cEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccccc
Q 037120 407 GIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQC 481 (489)
Q Consensus 407 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~ 481 (489)
.|++||+.++ +.+..+. +|.+.|++++|+|++.+|++|+.||.|.||..+...
T Consensus 315 ~i~v~d~~~~----------~~~~~~~------------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 315 TIAVYTVYSG----------EQITMLK------------GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp EEEEEETTTC----------CEEEEEC------------CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred EEEEEECcCC----------cceeeec------------cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 9999999998 7777777 999999999999999999999999999999876543
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-32 Score=259.47 Aligned_cols=248 Identities=14% Similarity=0.158 Sum_probs=179.2
Q ss_pred CCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
++.+|.+++|+|++ .|++|+.||+|+|||+.+.+.... ......+|... |++++|+|++. +|+++
T Consensus 81 ~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~----------~~~~~~~H~~~---V~~v~~spdg~-~l~sg 145 (344)
T 4gqb_B 81 TEAGVADLTWVGER-GILVASDSGAVELWELDENETLIV----------SKFCKYEHDDI---VSTVSVLSSGT-QAVSG 145 (344)
T ss_dssp ESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEE----------EEEEEECCSSC---EEEEEECTTSS-EEEEE
T ss_pred cCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeE----------eeccccCCCCC---EEEEEECCCCC-EEEEE
Confidence 34579999999996 688999999999999988443321 11122457776 99999999986 88888
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeec--
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELS-- 252 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-- 252 (489)
+.| ++|++||+..+ . ...++.+|...|++++|+|++..+|++++.|++|++||+++++ +...+
T Consensus 146 s~d-~~i~iwd~~~~-----~-------~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~--~~~~~~~ 210 (344)
T 4gqb_B 146 SKD-ICIKVWDLAQQ-----V-------VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK--PASQIGC 210 (344)
T ss_dssp ETT-SCEEEEETTTT-----E-------EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS--CEEECC-
T ss_pred eCC-CeEEEEECCCC-----c-------EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccc--eeeeeec
Confidence 888 99999999432 1 2233488999999999999997689999999999999999876 33333
Q ss_pred cCCCCceeEEEEeec-CCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCc-ceeeccccceeeccc
Q 037120 253 TGSHGTLNSIQLHAE-NQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLE-KIGTLKAQSKIVSQE 330 (489)
Q Consensus 253 ~~h~~~v~~~~~~p~-~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~i~~~~~~~~~~~~~ 330 (489)
..|...+.+++|+|+ +.++++|+.||+|++||+++++++..+.+|... |++++|+|++. ++++..
T Consensus 211 ~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~----v~~v~fsp~g~~~lasgs--------- 277 (344)
T 4gqb_B 211 SAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQC----VTGLVFSPHSVPFLASLS--------- 277 (344)
T ss_dssp ---CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSC----EEEEEECSSSSCCEEEEE---------
T ss_pred ceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCC----EEEEEEccCCCeEEEEEe---------
Confidence 355667999999995 456778888999999999999999999999877 99999988874 444321
Q ss_pred eeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 331 IHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 331 i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
.|+. ..+++...+....... +...+..++|+|++..++++||.|++|++
T Consensus 278 -----------------~D~~-i~vwd~~~~~~~~~~~-------------H~~~V~~v~~sp~~~~llas~s~D~~v~~ 326 (344)
T 4gqb_B 278 -----------------EDCS-LAVLDSSLSELFRSQA-------------HRDFVRDATWSPLNHSLLTTVGWDHQVVH 326 (344)
T ss_dssp -----------------TTSC-EEEECTTCCEEEEECC-------------CSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred -----------------CCCe-EEEEECCCCcEEEEcC-------------CCCCEEEEEEeCCCCeEEEEEcCCCeEEE
Confidence 1111 1112211111111000 00123446788888889999999999999
Q ss_pred EeccCC
Q 037120 411 LDFFPG 416 (489)
Q Consensus 411 wd~~~~ 416 (489)
|++.+.
T Consensus 327 w~v~~~ 332 (344)
T 4gqb_B 327 HVVPTE 332 (344)
T ss_dssp EECCC-
T ss_pred EECCCC
Confidence 999876
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-32 Score=260.67 Aligned_cols=314 Identities=10% Similarity=0.049 Sum_probs=206.5
Q ss_pred ccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 93 SFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
..+...|.+++|+|+|++||+|+.||.|+|||+.+... .....+.+|... |.+++|+|++. +|+
T Consensus 5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~------------~~~~~~~~h~~~---v~~~~~~~~~~-~l~ 68 (372)
T 1k8k_C 5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW------------VQVHELKEHNGQ---VTGVDWAPDSN-RIV 68 (372)
T ss_dssp ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE------------EEEEEEECCSSC---EEEEEEETTTT-EEE
T ss_pred cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE------------EeeeeecCCCCc---ccEEEEeCCCC-EEE
Confidence 34667899999999999999999999999999987431 111223456655 99999999875 778
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC--cee
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP--SLE 250 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~ 250 (489)
+++.| |.|++||+... .... ...+.+|...|.+++|+|++. +|++++.|+.|++||++..+.. ...
T Consensus 69 ~~~~d-g~i~vwd~~~~-----~~~~-----~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~ 136 (372)
T 1k8k_C 69 TCGTD-RNAYVWTLKGR-----TWKP-----TLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKH 136 (372)
T ss_dssp EEETT-SCEEEEEEETT-----EEEE-----EEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEE
T ss_pred EEcCC-CeEEEEECCCC-----eeee-----eEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeee
Confidence 88877 99999999432 1111 112366889999999999998 9999999999999999986532 222
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC------------------CcccceeecCCccCCCCeeEEEeCC
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRG------------------GRTSAPFHNHKEVCHLPLTSLKLAS 312 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~------------------~~~~~~~~~~~~~~~~~v~~l~~~~ 312 (489)
....|...|.+++|+|+++++++++.||.|++||++. ++.+..+..|... |.+++|+
T Consensus 137 ~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~~- 211 (372)
T 1k8k_C 137 IKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGW----VHGVCFS- 211 (372)
T ss_dssp ECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSC----EEEEEEC-
T ss_pred eecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCe----EEEEEEC-
Confidence 3357899999999999999999999999999999753 3334444444433 5555554
Q ss_pred CCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceee
Q 037120 313 MLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWL 392 (489)
Q Consensus 313 ~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (489)
|++.++++++.++. ..+++...+........ . ...+..++|+
T Consensus 212 -------------------------~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~------~------~~~v~~~~~~ 253 (372)
T 1k8k_C 212 -------------------------ANGSRVAWVSHDST-VCLADADKKMAVATLAS------E------TLPLLAVTFI 253 (372)
T ss_dssp -------------------------SSSSEEEEEETTTE-EEEEEGGGTTEEEEEEC------S------SCCEEEEEEE
T ss_pred -------------------------CCCCEEEEEeCCCE-EEEEECCCCceeEEEcc------C------CCCeEEEEEe
Confidence 44444444443322 23344433332221111 0 0122345677
Q ss_pred cCCcEEEEeecCCCcEEEEeccC--CCCC-CeeeccC--------cccchhhHhhh-hccc------CCc-ccCCCceEE
Q 037120 393 STNSIYAVGSSSDHGIHLLDFFP--GSSS-PSHVDYN--------EDIESLSERTK-LKKE------NRF-VPLSEGVTA 453 (489)
Q Consensus 393 ~~~~~~l~sgs~d~~i~vwd~~~--~~~~-~~~~~~~--------~~~~~~~~~~~-~~~~------~~~-~~h~~~V~~ 453 (489)
|++ .++++| .|+.|++||+.. +.-. ....+.. ..+..+..... .... ..+ .+|.+.|++
T Consensus 254 ~~~-~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 331 (372)
T 1k8k_C 254 TES-SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQ 331 (372)
T ss_dssp ETT-EEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEE
T ss_pred cCC-CEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcce
Confidence 765 466666 899999999987 3000 0000000 00001100000 0000 122 389999999
Q ss_pred EEee-CCC---CeEEeccCcceeEEEeccc
Q 037120 454 CVTH-PLN---NTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 454 va~~-p~~---~~i~sgs~dg~i~v~~~~~ 479 (489)
++|+ +++ .+|+||+.||.|+||..+.
T Consensus 332 ~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 332 ISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp EEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred eEEecCCCcceeeEEEecCCCceEEEEecC
Confidence 9977 555 8999999999999997654
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-32 Score=301.89 Aligned_cols=328 Identities=12% Similarity=0.102 Sum_probs=233.9
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|...|.+++|+|+|++||+|+.||+|+|||+.+..... .+.+|... |.+++|+|++. .+
T Consensus 611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~--------------~~~~h~~~---v~~~~~s~~~~-~l 672 (1249)
T 3sfz_A 611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL--------------DIKAHEDE---VLCCAFSSDDS-YI 672 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE--------------EECCCSSC---EEEEEECTTSS-EE
T ss_pred EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE--------------EeccCCCC---EEEEEEecCCC-EE
Confidence 45677789999999999999999999999999998854433 12456555 99999999986 78
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCC-cEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT-SRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
++++.| |+|++||+..+ . ....+.+|...|.+++|+|++. .++++++.|+.|++||+++++ +..
T Consensus 673 ~s~~~d-~~v~vwd~~~~-----~-------~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~--~~~ 737 (1249)
T 3sfz_A 673 ATCSAD-KKVKIWDSATG-----K-------LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE--CRN 737 (1249)
T ss_dssp EEEETT-SEEEEEETTTC-----C-------EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS--EEE
T ss_pred EEEeCC-CeEEEEECCCC-----c-------eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc--hhh
Confidence 888877 99999999432 1 1222367999999999999532 388999999999999999877 677
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceee-----------------------------------
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH----------------------------------- 295 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~----------------------------------- 295 (489)
.+.+|...|++++|+|+++++++++.||.|++||+++++....+.
T Consensus 738 ~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~ 817 (1249)
T 3sfz_A 738 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA 817 (1249)
T ss_dssp EECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE
T ss_pred eecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc
Confidence 777999999999999999999999999999999998876533332
Q ss_pred --------------------cCCccCCCCeeEEEeCCCCcceeeccc----------------cceeeccceeEEEeCCC
Q 037120 296 --------------------NHKEVCHLPLTSLKLASMLEKIGTLKA----------------QSKIVSQEIHSIDLDPS 339 (489)
Q Consensus 296 --------------------~~~~~~~~~v~~l~~~~~~~~i~~~~~----------------~~~~~~~~i~~~~~~p~ 339 (489)
+|.. +|.+++|+|++..++.... ....+...|.++.|+|+
T Consensus 818 ~~~v~~~d~~~~~~~~~~~~~~~~----~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spd 893 (1249)
T 3sfz_A 818 KNKVLLFDIHTSGLLAEIHTGHHS----TIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPD 893 (1249)
T ss_dssp TTEEEEEETTTCCEEEEEECSSSS----CCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred CCcEEEEEecCCCceeEEcCCCCC----ceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCC
Confidence 2222 3666677776665532111 11234556777888887
Q ss_pred CCeEEEEEecCCceEEEEeeccceee------------------ec---CCCC--CCcCCCC--ccccccCCCcceeecC
Q 037120 340 CSYQLAFHLDDGWSGVLDVYNSRVSH------------------VH---CPPP--AWLSDSN--NSADQLHLRKPSWLST 394 (489)
Q Consensus 340 ~~~~~~~~~~~~w~~~~~~~~~~~~~------------------~~---~~~~--~~~~~~~--~~~~~~~~~~~~~~~~ 394 (489)
+.++++++.++. ..+++...+.... .. .... .+..... ...........+|+|+
T Consensus 894 g~~l~s~s~dg~-v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~ 972 (1249)
T 3sfz_A 894 GSSFLTASDDQT-IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPH 972 (1249)
T ss_dssp SSEEEEEETTSC-EEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTT
T ss_pred CCEEEEEeCCCe-EEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCC
Confidence 777777666554 1122211100000 00 0000 0000000 0000112344567776
Q ss_pred CcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEE
Q 037120 395 NSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLV 474 (489)
Q Consensus 395 ~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v 474 (489)
+ .++++|+.||.|++||+.++ +....+. +|.+.|++++|+|++++|++|+.||.|.+
T Consensus 973 g-~~l~~g~~~g~i~i~d~~~~----------~~~~~~~------------~h~~~v~~l~~s~dg~~l~s~~~dg~i~v 1029 (1249)
T 3sfz_A 973 L-EYVAFGDEDGAIKIIELPNN----------RVFSSGV------------GHKKAVRHIQFTADGKTLISSSEDSVIQV 1029 (1249)
T ss_dssp S-SEEEEEETTSCCEEEETTTT----------SCEEECC------------CCSSCCCCEEECSSSSCEEEECSSSBEEE
T ss_pred C-CEEEEEcCCCCEEEEEcCCC----------ceeeecc------------cCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 5 46777889999999999988 6666666 89999999999999999999999999999
Q ss_pred Eecccc
Q 037120 475 VSQKQQ 480 (489)
Q Consensus 475 ~~~~~~ 480 (489)
|.....
T Consensus 1030 wd~~~~ 1035 (1249)
T 3sfz_A 1030 WNWQTG 1035 (1249)
T ss_dssp EETTTT
T ss_pred EECCCC
Confidence 986543
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-32 Score=265.80 Aligned_cols=265 Identities=14% Similarity=0.200 Sum_probs=192.3
Q ss_pred cccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEE
Q 037120 148 HLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRL 227 (489)
Q Consensus 148 ~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 227 (489)
+.+|... |++++|+|++. ++++++.| |+|+|||+..+. ....+.+|...|++++|+|++. +|
T Consensus 104 l~gh~~~---V~~~~~~p~~~-~l~s~s~D-g~i~vwd~~~~~------------~~~~l~~h~~~V~~v~~~~~~~-~l 165 (410)
T 1vyh_C 104 LSGHRSP---VTRVIFHPVFS-VMVSASED-ATIKVWDYETGD------------FERTLKGHTDSVQDISFDHSGK-LL 165 (410)
T ss_dssp EECCSSC---EEEEEECSSSS-EEEEEESS-SCEEEEETTTCC------------CCEEECCCSSCEEEEEECTTSS-EE
T ss_pred ecccCCc---EEEEEEcCCCC-EEEEEeCC-CeEEEEECCCCc------------EEEEEeccCCcEEEEEEcCCCC-EE
Confidence 4567777 99999999985 88888888 999999994331 1122378999999999999999 99
Q ss_pred EEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeE
Q 037120 228 IASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTS 307 (489)
Q Consensus 228 ~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~ 307 (489)
++|+.|++|++||+++.+ ++..+.+|...|.+++|+|+++++++|+.|++|++||++++.++..+.+|... |.+
T Consensus 166 ~sgs~D~~i~iwd~~~~~--~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~----v~~ 239 (410)
T 1vyh_C 166 ASCSADMTIKLWDFQGFE--CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW----VRM 239 (410)
T ss_dssp EEEETTSCCCEEETTSSC--EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC----EEE
T ss_pred EEEeCCCeEEEEeCCCCc--eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCcc----EEE
Confidence 999999999999998876 77778899999999999999999999999999999999999999999999877 999
Q ss_pred EEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCcc-ccccCC
Q 037120 308 LKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNS-ADQLHL 386 (489)
Q Consensus 308 l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 386 (489)
+.|+|++..+++......+. ++ .+ ..+. ....+.+|...+.++ .|.+..... ......
T Consensus 240 ~~~~~~g~~l~s~s~D~~v~---vw--d~-~~~~-------------~~~~~~~h~~~v~~~--~~~~~~~~~~~~~~~~ 298 (410)
T 1vyh_C 240 VRPNQDGTLIASCSNDQTVR---VW--VV-ATKE-------------CKAELREHRHVVECI--SWAPESSYSSISEATG 298 (410)
T ss_dssp EEECTTSSEEEEEETTSCEE---EE--ET-TTCC-------------EEEEECCCSSCEEEE--EECCSCGGGGGGGCCS
T ss_pred EEECCCCCEEEEEcCCCeEE---EE--EC-CCCc-------------eeeEecCCCceEEEE--EEcCcccccchhhhcc
Confidence 99998888775422111110 00 00 0000 111111121111111 111110000 000000
Q ss_pred CcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEec
Q 037120 387 RKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAG 466 (489)
Q Consensus 387 ~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sg 466 (489)
.........+.++++|+.|+.|++||+.++ +.+..+. +|.+.|++++|+|++.+|++|
T Consensus 299 ~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~----------~~~~~~~------------~h~~~v~~v~~~~~g~~l~s~ 356 (410)
T 1vyh_C 299 SETKKSGKPGPFLLSGSRDKTIKMWDVSTG----------MCLMTLV------------GHDNWVRGVLFHSGGKFILSC 356 (410)
T ss_dssp CC-------CCEEEEEETTSEEEEEETTTT----------EEEEEEE------------CCSSCEEEEEECSSSSCEEEE
T ss_pred ccccccCCCCCEEEEEeCCCeEEEEECCCC----------ceEEEEE------------CCCCcEEEEEEcCCCCEEEEE
Confidence 000001112678999999999999999988 7777777 999999999999999999999
Q ss_pred cCcceeEEEeccc
Q 037120 467 TKNSSLLVVSQKQ 479 (489)
Q Consensus 467 s~dg~i~v~~~~~ 479 (489)
+.||.|+||..+.
T Consensus 357 s~D~~i~vwd~~~ 369 (410)
T 1vyh_C 357 ADDKTLRVWDYKN 369 (410)
T ss_dssp ETTTEEEEECCTT
T ss_pred eCCCeEEEEECCC
Confidence 9999999997654
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-31 Score=258.64 Aligned_cols=260 Identities=10% Similarity=0.085 Sum_probs=196.9
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCC-CCE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLAN-QDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~-~~~ 170 (489)
+..|...|.+++|+|+|++||+|+.||.|+|||+.... ......+.+|... |++++|+++. ..+
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~------------~~~~~~~~~h~~~---v~~~~~~~~~~~~~ 71 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET------------HKLIDTLTGHEGP---VWRVDWAHPKFGTI 71 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE------------EEEEEEECCCSSC---EEEEEECCGGGCSE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc------------ceeeeEecCCCCc---EEEEEeCCCCCCCE
Confidence 55677889999999999999999999999999997421 1111223456666 9999998761 348
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecC--CCcEEEEEeCCCcEEEEECCCCCcCc
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAV--NTSRLIASDTHGVVNIWDRRVGVLPS 248 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~ 248 (489)
|++++.| |.|++||+.... .. ....+.+|...|.+++|+|+ +. +|++++.|+.|++||++......
T Consensus 72 l~s~~~d-g~v~iwd~~~~~------~~----~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~ 139 (379)
T 3jrp_A 72 LASCSYD-GKVLIWKEENGR------WS----QIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTS 139 (379)
T ss_dssp EEEEETT-SCEEEEEEETTE------EE----EEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCC
T ss_pred EEEeccC-CEEEEEEcCCCc------ee----EeeeecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCcee
Confidence 8888888 999999994321 11 12223778999999999999 77 99999999999999999875444
Q ss_pred eeeccCCCCceeEEEEee-------------cCCEEEEEeCCCeEEEEEcCCCcc----cceeecCCccCCCCeeEEEeC
Q 037120 249 LELSTGSHGTLNSIQLHA-------------ENQIIFAAGKHGSIYLWDLRGGRT----SAPFHNHKEVCHLPLTSLKLA 311 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p-------------~~~~l~~~~~dg~i~lwd~~~~~~----~~~~~~~~~~~~~~v~~l~~~ 311 (489)
...+..|...|.+++|+| ++.++++++.||.|++||++++.. +..+.+|... |.+++|+
T Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~----v~~~~~s 215 (379)
T 3jrp_A 140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW----VRDVAWS 215 (379)
T ss_dssp EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC----EEEEEEC
T ss_pred eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCc----EeEEEEC
Confidence 445668999999999999 699999999999999999987653 2344445444 5555444
Q ss_pred CCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCccee
Q 037120 312 SMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSW 391 (489)
Q Consensus 312 ~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (489)
|++ . .
T Consensus 216 p~~--------------------------~----------------------------------~--------------- 220 (379)
T 3jrp_A 216 PTV--------------------------L----------------------------------L--------------- 220 (379)
T ss_dssp CCC--------------------------S----------------------------------S---------------
T ss_pred CCC--------------------------C----------------------------------C---------------
Confidence 431 0 0
Q ss_pred ecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcce
Q 037120 392 LSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSS 471 (489)
Q Consensus 392 ~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~ 471 (489)
+.++++++.|+.|+|||+..+..... ..+.... .|...|++++|+|++.+|++++.||.
T Consensus 221 ----~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~------------~~~~~v~~~~~s~~g~~l~~~~~dg~ 279 (379)
T 3jrp_A 221 ----RSYLASVSQDRTCIIWTQDNEQGPWK-----KTLLKEE------------KFPDVLWRASWSLSGNVLALSGGDNK 279 (379)
T ss_dssp ----SEEEEEEETTSCEEEEEESSTTSCCE-----EEESSSS------------CCSSCEEEEEECSSSCCEEEEESSSS
T ss_pred ----CCeEEEEeCCCEEEEEeCCCCCccce-----eeeeccc------------cCCCcEEEEEEcCCCCEEEEecCCCc
Confidence 45788889999999999987610000 0111112 58899999999999999999999999
Q ss_pred eEEEecc
Q 037120 472 LLVVSQK 478 (489)
Q Consensus 472 i~v~~~~ 478 (489)
|.||...
T Consensus 280 i~iw~~~ 286 (379)
T 3jrp_A 280 VTLWKEN 286 (379)
T ss_dssp EEEEEEE
T ss_pred EEEEeCC
Confidence 9999765
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=258.06 Aligned_cols=300 Identities=11% Similarity=0.029 Sum_probs=194.2
Q ss_pred ceeEEEECCCCcEEEEEecCC-------eEEEEeCCCcccccCCCCCCCCCcc--cccccccCCCCCCceeEEEeeCCCC
Q 037120 98 GISALDFDCKGIYLVSATRSG-------CLTVHDFESLYYQCNGTLPGVGLKE--DQSKHLLHIPLPQQLDAVRWNLANQ 168 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg-------~i~vwd~~~~~~~~~~~~~~~g~~~--~~~~~~~h~~~~~~V~~v~~~~~~~ 168 (489)
.|.|++|+|||++||+|+.|. .|+||++......... ... ....+..|... |.+++++.+
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~------~~~~~~~~~l~~~~~~---v~s~~~~~~-- 84 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE------QFHILSEFALEDNDDS---PTAIDASKG-- 84 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH------HEEEEEEEECCTTSCC---CCEEEEETT--
T ss_pred CEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee------eeeeeeEEEccCCCCc---eEEEEeCCC--
Confidence 499999999999999998643 5999998763221110 011 11122334444 778887654
Q ss_pred CEEEEEe-----------cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEE--EeCCCc
Q 037120 169 DEVACAS-----------TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIA--SDTHGV 235 (489)
Q Consensus 169 ~~l~s~~-----------~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s--~s~dg~ 235 (489)
.++++. .| +++++|++....... ..+.... ......+...+..++|+|||+ ++++ ++.|++
T Consensus 85 -~~~~g~~~~~~~l~s~~~d-~~~r~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~v~fSpDg~-~la~as~~~d~~ 158 (365)
T 4h5i_A 85 -IILVGCNENSTKITQGKGN-KHLRKFKYDKVNDQL-EFLTSVD--FDASTNADDYTKLVYISREGT-VAAIASSKVPAI 158 (365)
T ss_dssp -EEEEECCCCHHHHHHTSCC-CCEEEEEEETTTTEE-EEEEEEC--SSCCCCTTCCEEEEEECTTSS-CEEEEESCSSCE
T ss_pred -EEEEEECCCccEEEEecCC-CcEEEEEecCCCceE-EEeeeec--eeecCCcccCEEEEEEcCCCC-EEEEEECCCCCE
Confidence 455543 34 889999985432211 1111111 111244566789999999999 6554 447999
Q ss_pred EEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccc--eeecCCccCCCCeeEEEeCCC
Q 037120 236 VNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSA--PFHNHKEVCHLPLTSLKLASM 313 (489)
Q Consensus 236 i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~--~~~~~~~~~~~~v~~l~~~~~ 313 (489)
|+|||+++++ ++..+ .|...|.+++|+|+|+++++++. +.+++|+..+++.+. ....|... |++++|+|+
T Consensus 159 i~iwd~~~~~--~~~~~-~~~~~V~~v~fspdg~~l~s~s~-~~~~~~~~~~~~~~~~~~~~~~~~~----v~~v~fspd 230 (365)
T 4h5i_A 159 MRIIDPSDLT--EKFEI-ETRGEVKDLHFSTDGKVVAYITG-SSLEVISTVTGSCIARKTDFDKNWS----LSKINFIAD 230 (365)
T ss_dssp EEEEETTTTE--EEEEE-ECSSCCCEEEECTTSSEEEEECS-SCEEEEETTTCCEEEEECCCCTTEE----EEEEEEEET
T ss_pred EEEeECCCCc--EEEEe-CCCCceEEEEEccCCceEEeccc-eeEEEEEeccCcceeeeecCCCCCC----EEEEEEcCC
Confidence 9999999876 44344 57788999999999999888875 456777777776533 33456655 888888888
Q ss_pred CcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceE--EEEeeccceeeecCCCCCCcCCCCccccccCCCccee
Q 037120 314 LEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSG--VLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSW 391 (489)
Q Consensus 314 ~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (489)
+..+.+..... ...+ .+........... ......++...+. .++|
T Consensus 231 g~~l~~~s~d~---~~~~----------~i~~~~~~~~~~~~~~~~~~~~~~~~V~--------------------~~~~ 277 (365)
T 4h5i_A 231 DTVLIAASLKK---GKGI----------VLTKISIKSGNTSVLRSKQVTNRFKGIT--------------------SMDV 277 (365)
T ss_dssp TEEEEEEEESS---SCCE----------EEEEEEEETTEEEEEEEEEEESSCSCEE--------------------EEEE
T ss_pred CCEEEEEecCC---ccee----------EEeecccccceecceeeeeecCCCCCeE--------------------eEEE
Confidence 87665321100 0000 0111111111000 1111222222222 2345
Q ss_pred ecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccch-hhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcc
Q 037120 392 LSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIES-LSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNS 470 (489)
Q Consensus 392 ~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg 470 (489)
+|+ +.++++|+.|++|+|||+.++ +.+.. +. +|.+.|++|+|+|++.+|||||.|+
T Consensus 278 Spd-g~~lasgs~D~~V~iwd~~~~----------~~~~~~~~------------gH~~~V~~v~fSpdg~~laS~S~D~ 334 (365)
T 4h5i_A 278 DMK-GELAVLASNDNSIALVKLKDL----------SMSKIFKQ------------AHSFAITEVTISPDSTYVASVSAAN 334 (365)
T ss_dssp CTT-SCEEEEEETTSCEEEEETTTT----------EEEEEETT------------SSSSCEEEEEECTTSCEEEEEETTS
T ss_pred CCC-CCceEEEcCCCEEEEEECCCC----------cEEEEecC------------cccCCEEEEEECCCCCEEEEEeCCC
Confidence 554 678889999999999999998 76665 45 8999999999999999999999999
Q ss_pred eeEEEecc
Q 037120 471 SLLVVSQK 478 (489)
Q Consensus 471 ~i~v~~~~ 478 (489)
+|+||.-.
T Consensus 335 tvrvw~ip 342 (365)
T 4h5i_A 335 TIHIIKLP 342 (365)
T ss_dssp EEEEEECC
T ss_pred eEEEEEcC
Confidence 99999864
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-32 Score=261.76 Aligned_cols=323 Identities=15% Similarity=0.115 Sum_probs=211.7
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC----C
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA----N 167 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~----~ 167 (489)
+..|...|++++|+| ++|++|+.||.|+|||+.+..... .......+.+|... |.+++|+|+ +
T Consensus 12 ~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~--------~~~~~~~~~~h~~~---v~~~~~~~~~~~~g 78 (397)
T 1sq9_A 12 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNEN--------PKDKSYSHFVHKSG---LHHVDVLQAIERDA 78 (397)
T ss_dssp SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCC--------GGGGEEEEECCTTC---EEEEEEEEEEETTT
T ss_pred hhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCccccc--------CCCcceEEecCCCc---EEEEEEecccccCC
Confidence 566778899999999 799999999999999998844211 01122223456666 999999998 6
Q ss_pred ---CCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCc-----ccCeeEEEEe----cCCCcE-EEEEeCCC
Q 037120 168 ---QDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDV-----QKGLSDLAFS----AVNTSR-LIASDTHG 234 (489)
Q Consensus 168 ---~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~----~~~~~~-l~s~s~dg 234 (489)
. +|++++.| |.|++||+....... ......+..| ...|.+++|+ |++. . |++++.||
T Consensus 79 ~~~~-~l~s~~~d-g~i~iw~~~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~l~~~~~dg 148 (397)
T 1sq9_A 79 FELC-LVATTSFS-GDLLFYRITREDETK-------KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS-HRLVATDVKG 148 (397)
T ss_dssp EEEE-EEEEEETT-SCEEEEEEEECTTTC-------CEEEEEECCSCTTGGGSCEEEEEEECCC----C-EEEEEEETTS
T ss_pred cccc-EEEEEcCC-CCEEEEEccCCcccc-------cccceeecccccccCCCcEEEEEEeeccCCCCc-eEEEEEeCCC
Confidence 5 77888877 999999995443211 0011223556 5899999999 9999 8 99999999
Q ss_pred cEEEEECCC------CCcCcee-----ec-------cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeec
Q 037120 235 VVNIWDRRV------GVLPSLE-----LS-------TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 235 ~i~iwd~~~------~~~~~~~-----~~-------~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
.|++||+++ ++ .+. .+ ..|...|.+++|+|++ ++++++.||.|++||+++++.+..+..
T Consensus 149 ~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~ 225 (397)
T 1sq9_A 149 TTYIWKFHPFADESNSL--TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFES 225 (397)
T ss_dssp CEEEEEEESSSSHHHHT--TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEEC
T ss_pred cEEEEeCCccccccccc--eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEec
Confidence 999999998 54 232 33 4588999999999999 999999999999999999988888887
Q ss_pred ---C---CccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCC
Q 037120 297 ---H---KEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPP 370 (489)
Q Consensus 297 ---~---~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 370 (489)
| ... |.+++|+|++..++........ ..| .+++...+........+
T Consensus 226 ~~~h~~~~~~----i~~i~~~~~~~~l~~~~~d~~~--g~i----------------------~i~d~~~~~~~~~~~~~ 277 (397)
T 1sq9_A 226 QHSMINNSNS----IRSVKFSPQGSLLAIAHDSNSF--GCI----------------------TLYETEFGERIGSLSVP 277 (397)
T ss_dssp CC---CCCCC----EEEEEECSSTTEEEEEEEETTE--EEE----------------------EEEETTTCCEEEEECBC
T ss_pred cccccccCCc----cceEEECCCCCEEEEEecCCCC--ceE----------------------EEEECCCCcccceeccC
Confidence 7 655 8888888887766542211000 001 11121111111100000
Q ss_pred CC-CcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhh---------hcc
Q 037120 371 PA-WLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTK---------LKK 440 (489)
Q Consensus 371 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~ 440 (489)
.. -............+..++|+|++ .++++|+.|+.|+|||+.++ +.+..+..... ...
T Consensus 278 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~----------~~~~~~~~~~~~~~~~~~~~~g~ 346 (397)
T 1sq9_A 278 THSSQASLGEFAHSSWVMSLSFNDSG-ETLCSAGWDGKLRFWDVKTK----------ERITTLNMHCDDIEIEEDILAVD 346 (397)
T ss_dssp --------CCBSBSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTT----------EEEEEEECCGGGCSSGGGCCCBC
T ss_pred cccccccccccccCCcEEEEEECCCC-CEEEEEeCCCeEEEEEcCCC----------ceeEEEecccCcccchhhhhccc
Confidence 00 00000000001123345676664 57788899999999999887 44443320000 000
Q ss_pred cCCcccCCCceEEEEeeCCC----------CeEEeccCcceeEEEeccc
Q 037120 441 ENRFVPLSEGVTACVTHPLN----------NTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 441 ~~~~~~h~~~V~~va~~p~~----------~~i~sgs~dg~i~v~~~~~ 479 (489)
.-....|...|++++|+|++ .+|++|+.||.|.||..+.
T Consensus 347 ~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 347 EHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp TTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred cccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 00011348999999999998 7999999999999997653
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=256.96 Aligned_cols=308 Identities=11% Similarity=0.112 Sum_probs=205.3
Q ss_pred cccCCCceeEEEECCCCc-EEEEEec---CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCC
Q 037120 92 RSFGKPGISALDFDCKGI-YLVSATR---SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLAN 167 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~-~la~g~~---dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~ 167 (489)
+..|...|.+++|+|++. ++++|+. ||.|+|||+.+...... ....|... |.+++|+|++
T Consensus 14 ~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~-------------~~~~~~~~---v~~~~~~~~~ 77 (357)
T 3i2n_A 14 QKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL-------------REIEKAKP---IKCGTFGATS 77 (357)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE-------------EEEEESSC---EEEEECTTCC
T ss_pred ccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce-------------eeecccCc---EEEEEEcCCC
Confidence 445777899999999995 5556766 99999999987443321 11245555 9999999984
Q ss_pred --CCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEE------ecCCCcEEEEEeCCCcEEEE
Q 037120 168 --QDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAF------SAVNTSRLIASDTHGVVNIW 239 (489)
Q Consensus 168 --~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~------~~~~~~~l~s~s~dg~i~iw 239 (489)
..+|++++.| |.|++||+..... .... +.+|...|.+++| +|+++ +|++++.||.|++|
T Consensus 78 ~~~~~l~~~~~d-g~i~iwd~~~~~~-------~~~~----~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vw 144 (357)
T 3i2n_A 78 LQQRYLATGDFG-GNLHIWNLEAPEM-------PVYS----VKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVW 144 (357)
T ss_dssp TTTCCEEEEETT-SCEEEECTTSCSS-------CSEE----ECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEE
T ss_pred CCCceEEEecCC-CeEEEEeCCCCCc-------cEEE----EEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEE
Confidence 3588888888 9999999954321 1222 3789999999965 57888 99999999999999
Q ss_pred ECCCCCcCceeeccCCC----CceeEEE----EeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeC
Q 037120 240 DRRVGVLPSLELSTGSH----GTLNSIQ----LHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLA 311 (489)
Q Consensus 240 d~~~~~~~~~~~~~~h~----~~v~~~~----~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~ 311 (489)
|+++++.+ +..+..|. ..+.+++ |+|+++++++++.||.|++||+++++.... ..|... |.+++|+
T Consensus 145 d~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~----v~~~~~~ 218 (357)
T 3i2n_A 145 DPRQKDDP-VANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNG----VCSLEFD 218 (357)
T ss_dssp CTTSCSSC-SEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSC----EEEEEES
T ss_pred eCCCCCCc-ceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCc----eEEEEcC
Confidence 99987533 23333333 3788998 788999999999999999999998875333 445544 7777777
Q ss_pred C---CCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCc
Q 037120 312 S---MLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRK 388 (489)
Q Consensus 312 ~---~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (489)
| ++..++ +++.++. ..+++...+......... .+.. ....+..
T Consensus 219 ~~~~~~~~l~--------------------------~~~~dg~-i~i~d~~~~~~~~~~~~~-~~~~------~~~~v~~ 264 (357)
T 3i2n_A 219 RKDISMNKLV--------------------------ATSLEGK-FHVFDMRTQHPTKGFASV-SEKA------HKSTVWQ 264 (357)
T ss_dssp CSSSSCCEEE--------------------------EEESTTE-EEEEEEEEEETTTEEEEE-EEEC------CSSCEEE
T ss_pred CCCCCCCEEE--------------------------EECCCCe-EEEEeCcCCCcccceeee-ccCC------CcCCEEE
Confidence 7 554443 3222221 112222221111100000 0000 0122344
Q ss_pred ceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeec---------cCcccchhhHhhhhcccCCcccCCCceEEEEeeCC
Q 037120 389 PSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVD---------YNEDIESLSERTKLKKENRFVPLSEGVTACVTHPL 459 (489)
Q Consensus 389 ~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~ 459 (489)
+.|+|++..++++|+.|+.|++||+........... ..+.+..+ .+|.+.|++++|+|+
T Consensus 265 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------------~~~~~~v~~~~~s~~ 332 (357)
T 3i2n_A 265 VRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV------------TLSTQPISSLDWSPD 332 (357)
T ss_dssp EEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE------------ECCSSCEEEEEECSS
T ss_pred EEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc------------ccCCCCeeEEEEcCC
Confidence 678888777999999999999999987621100000 00112223 389999999999999
Q ss_pred CCeEE-eccCcceeEEEecccc
Q 037120 460 NNTIV-AGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 460 ~~~i~-sgs~dg~i~v~~~~~~ 480 (489)
+..|+ +|+.||.|.||..++.
T Consensus 333 ~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 333 KRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp STTEEEEEETTSEEEEEEECC-
T ss_pred CCeEEEEecCCCcEEEEECCCc
Confidence 99888 8999999999987654
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-32 Score=265.24 Aligned_cols=284 Identities=14% Similarity=0.157 Sum_probs=206.1
Q ss_pred cccCCCceeEEEECCC-CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDCK-GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~-g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
...+...|++++|+|+ +.+||+|+.||.|+|||+......... .+.......+.+|... |.+++|+|++..+
T Consensus 124 ~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~----~~~~~~~~~~~~h~~~---v~~l~~~~~~~~~ 196 (430)
T 2xyi_A 124 KINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP----SGECQPDLRLRGHQKE---GYGLSWNPNLNGY 196 (430)
T ss_dssp EEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT----TCCCCCSEEEECCSSC---CCCEEECTTSTTE
T ss_pred EEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc----cccCCCcEEecCCCCC---eEEEEeCCCCCCe
Confidence 3445677999999997 789999999999999999763211100 0112333344567777 7889999998778
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCc-Cce
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVL-PSL 249 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~ 249 (489)
|++++.| |+|++||+...... ...+..... +.+|...|.+++|+|++..+|++++.||.|++||++++.. ..+
T Consensus 197 l~s~~~d-g~i~vwd~~~~~~~-~~~~~~~~~----~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 197 LLSASDD-HTICLWDINATPKE-HRVIDAKNI----FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp EEEECTT-SCEEEEETTSCCBG-GGEEECSEE----ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCS
T ss_pred EEEEeCC-CeEEEEeCCCCCCC-Cceecccee----ecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcce
Confidence 9999988 99999999643211 122222232 3789999999999996665999999999999999998631 244
Q ss_pred eeccCCCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCCC-cccceeecCCccCCCCeeEEEeCCCCcceeeccccceee
Q 037120 250 ELSTGSHGTLNSIQLHAENQ-IIFAAGKHGSIYLWDLRGG-RTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIV 327 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~p~~~-~l~~~~~dg~i~lwd~~~~-~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~ 327 (489)
..+..|...|++++|+|+++ ++++|+.||.|++||+++. ..+..+..|... |++++|+|++
T Consensus 271 ~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~----v~~i~~sp~~------------- 333 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDE----IFQVQWSPHN------------- 333 (430)
T ss_dssp EEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSC----EEEEEECSSC-------------
T ss_pred eEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCC----EEEEEECCCC-------------
Confidence 45568999999999999998 5778888999999999984 446777777655 6666655542
Q ss_pred ccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCc
Q 037120 328 SQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHG 407 (489)
Q Consensus 328 ~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~ 407 (489)
..++++|+.|+.
T Consensus 334 --------------------------------------------------------------------~~~l~s~~~d~~ 345 (430)
T 2xyi_A 334 --------------------------------------------------------------------ETILASSGTDRR 345 (430)
T ss_dssp --------------------------------------------------------------------TTEEEEEETTSC
T ss_pred --------------------------------------------------------------------CCEEEEEeCCCc
Confidence 335667889999
Q ss_pred EEEEeccCCCCCCeeeccCcccchhhHhhhh--cccCCcccCCCceEEEEeeCCCC-eEEeccCcceeEEEeccccccc
Q 037120 408 IHLLDFFPGSSSPSHVDYNEDIESLSERTKL--KKENRFVPLSEGVTACVTHPLNN-TIVAGTKNSSLLVVSQKQQCTS 483 (489)
Q Consensus 408 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~V~~va~~p~~~-~i~sgs~dg~i~v~~~~~~~~~ 483 (489)
|+|||+... ............ .....+.+|.+.|++++|+|+++ +|++++.||.|.||........
T Consensus 346 i~iwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~~ 414 (430)
T 2xyi_A 346 LHVWDLSKI----------GEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYN 414 (430)
T ss_dssp CEEEEGGGT----------TCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHHC
T ss_pred EEEEeCCCC----------ccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccccc
Confidence 999999874 111110000000 00111238999999999999999 9999999999999987665544
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-31 Score=251.82 Aligned_cols=189 Identities=14% Similarity=0.175 Sum_probs=157.3
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|...|.+++|+|+|++|++|+.|++|+|||+.+.+... .+.+|... |.+++|+|++. ++
T Consensus 61 ~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~--------------~~~~h~~~---v~~~~~~~~~~-~l 122 (319)
T 3frx_A 61 FKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ--------------RFVGHKSD---VMSVDIDKKAS-MI 122 (319)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--------------EEECCSSC---EEEEEECTTSC-EE
T ss_pred EeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeE--------------EEccCCCc---EEEEEEcCCCC-EE
Confidence 56677889999999999999999999999999998854433 23556666 99999999985 88
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCC-----cEEEEEeCCCcEEEEECCCCCc
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT-----SRLIASDTHGVVNIWDRRVGVL 246 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-----~~l~s~s~dg~i~iwd~~~~~~ 246 (489)
++++.| ++|++||++. . ....+.+|...|.+++|.|... ..|++++.|+.|++||+++.+
T Consensus 123 ~s~s~D-~~i~vwd~~~------~-------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~- 187 (319)
T 3frx_A 123 ISGSRD-KTIKVWTIKG------Q-------CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ- 187 (319)
T ss_dssp EEEETT-SCEEEEETTS------C-------EEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE-
T ss_pred EEEeCC-CeEEEEECCC------C-------eEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch-
Confidence 889888 9999999931 1 1223478999999999998532 279999999999999999865
Q ss_pred CceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceee
Q 037120 247 PSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 247 ~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
....+.+|...|++++|+|++++|++++.||+|++||+++++.+..+..+ .. |.+++|+|++..++.
T Consensus 188 -~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~----v~~~~~sp~~~~la~ 254 (319)
T 3frx_A 188 -IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ-DE----VFSLAFSPNRYWLAA 254 (319)
T ss_dssp -EEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC-SC----EEEEEECSSSSEEEE
T ss_pred -hheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-Cc----EEEEEEcCCCCEEEE
Confidence 55567799999999999999999999999999999999999888777753 34 889999998877754
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-33 Score=267.85 Aligned_cols=264 Identities=12% Similarity=0.090 Sum_probs=184.0
Q ss_pred cCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 94 FGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
.+...|++++|+|+|++||+|+.||.|+|||+.+... .....+.+|... |.+++|+|++. +|++
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~------------~~~~~~~~h~~~---v~~~~~s~~~~-~l~s 72 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGW------------KHARTFSDHDKI---VTCVDWAPKSN-RIVT 72 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEE------------EECCCBCCCSSC---EEEEEECTTTC-CEEE
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCce------------EEEEEEecCCce---EEEEEEeCCCC-EEEE
Confidence 3456799999999999999999999999999987421 111123456655 99999999985 7888
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-ceeec
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-SLELS 252 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~ 252 (489)
++.| ++|++||+.... .+.. ...+.+|...|++++|+|++. +|++++.|+.|++||+++++.. +.+.+
T Consensus 73 ~s~d-~~v~vwd~~~~~-----~~~~----~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 141 (377)
T 3dwl_C 73 CSQD-RNAYVYEKRPDG-----TWKQ----TLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHL 141 (377)
T ss_dssp EETT-SSEEEC-----------CCCC----EEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEE
T ss_pred EeCC-CeEEEEEcCCCC-----ceee----eeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEe
Confidence 8888 999999995432 0111 122377999999999999998 9999999999999999987521 34445
Q ss_pred cC-CCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce--eeccccceeecc
Q 037120 253 TG-SHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI--GTLKAQSKIVSQ 329 (489)
Q Consensus 253 ~~-h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i--~~~~~~~~~~~~ 329 (489)
.. |...|.+++|+|+++++++++.||.|++||++........... +.+..+ ....... .+..
T Consensus 142 ~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~-~~~~ 206 (377)
T 3dwl_C 142 KRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEAS--------------VWGSRLPFNTVCAEY-PSGG 206 (377)
T ss_dssp CSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSC--------------SSCSCCCEEEEEECC-CCSS
T ss_pred ecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCcccc--------------ccccccchhhhhhcc-cCCc
Confidence 55 9999999999999999999999999999999865421111000 000000 0000000 2223
Q ss_pred ceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEE
Q 037120 330 EIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIH 409 (489)
Q Consensus 330 ~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~ 409 (489)
.|.+++|+|+ +.++++|+.|+.|+
T Consensus 207 ~v~~~~~sp~--------------------------------------------------------~~~l~~~~~d~~i~ 230 (377)
T 3dwl_C 207 WVHAVGFSPS--------------------------------------------------------GNALAYAGHDSSVT 230 (377)
T ss_dssp SEEEEEECTT--------------------------------------------------------SSCEEEEETTTEEC
T ss_pred eEEEEEECCC--------------------------------------------------------CCEEEEEeCCCcEE
Confidence 3344444333 44677788999999
Q ss_pred EEeccCCCCCCeeeccCcc----cchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 410 LLDFFPGSSSPSHVDYNED----IESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 410 vwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
+||+.++ +. +..+. +|...|.+++|+|++.+|++|+.++.+.++..
T Consensus 231 iwd~~~~----------~~~~~~~~~~~------------~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 231 IAYPSAP----------EQPPRALITVK------------LSQLPLRSLLWANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp -CEECST----------TSCEEECCCEE------------CSSSCEEEEEEEETTEEEEEESSSSEEEECCC
T ss_pred EEECCCC----------CCcceeeEeec------------CCCCceEEEEEcCCCCEEEEEcCCcEEEEEeC
Confidence 9999988 55 55566 89999999999999999999998887755443
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-31 Score=257.60 Aligned_cols=281 Identities=11% Similarity=0.130 Sum_probs=206.1
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
++.|+||++ ++||+|. |++|+|||..+++.... ....+|... |++|+|+|++. +|++|+.|
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~------------~~~~~~~~~---V~sv~fspdg~-~lasgs~D- 168 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQL------------LQMEQPGEY---ISSVAWIKEGN-YLAVGTSS- 168 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEE------------EECCSTTCC---EEEEEECTTSS-EEEEEETT-
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEE------------EEecCCCCc---EEEEEECCCCC-EEEEEECC-
Confidence 678999986 4777775 99999999998554431 112234444 99999999986 88888888
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCc
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGT 258 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~ 258 (489)
|+|+|||+... .. ...+.+|...+.+++|+ +. +|++|+.|+.+++||.+.... .+..+.+|...
T Consensus 169 g~v~iWd~~~~-----~~-------~~~~~~h~~~v~~~s~~--~~-~l~sgs~d~~i~~~d~~~~~~-~~~~~~~h~~~ 232 (420)
T 4gga_A 169 AEVQLWDVQQQ-----KR-------LRNMTSHSARVGSLSWN--SY-ILSSGSRSGHIHHHDVRVAEH-HVATLSGHSQE 232 (420)
T ss_dssp SCEEEEETTTT-----EE-------EEEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTSSSC-EEEEEECCSSC
T ss_pred CeEEEEEcCCC-----cE-------EEEEeCCCCceEEEeeC--CC-EEEEEeCCCceeEeeecccce-eeEEecccccc
Confidence 99999999432 21 22237899999998875 55 899999999999999987543 34566799999
Q ss_pred eeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc----cceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEE
Q 037120 259 LNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT----SAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSI 334 (489)
Q Consensus 259 v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~----~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~ 334 (489)
+..+.++|++.++++++.|+.|++||..+++. +.....|... |.+++|+|.+..+....
T Consensus 233 ~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~----V~~~~~~p~~~~~la~~------------- 295 (420)
T 4gga_A 233 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGA----VKAVAWCPWQSNVLATG------------- 295 (420)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSC----EEEEEECTTCTTEEEEE-------------
T ss_pred eeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCc----eeeeeeCCCcccEEEEE-------------
Confidence 99999999999999999999999999998764 3445556655 88888877664432110
Q ss_pred EeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEe-ecCCCcEEEEec
Q 037120 335 DLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVG-SSSDHGIHLLDF 413 (489)
Q Consensus 335 ~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-gs~d~~i~vwd~ 413 (489)
.+..++-..++++.++........ . ..+....|.+++..++++ |+.|+.|+|||+
T Consensus 296 -----------~gs~D~~I~iwd~~t~~~~~~~~~------~-------~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~ 351 (420)
T 4gga_A 296 -----------GGTSDRHIRIWNVCSGACLSAVDA------H-------SQVCSILWSPHYKELISGHGFAQNQLVIWKY 351 (420)
T ss_dssp -----------ECTTTCEEEEEETTTTEEEEEEEC------S-------SCEEEEEEETTTTEEEEEECTTTCCEEEEET
T ss_pred -----------eecCCCEEEEEeCCccccceeecc------c-------cceeeeeecCCCCeEEEEEecCCCEEEEEEC
Confidence 000111122333333332221111 0 112335677777776654 558999999999
Q ss_pred cCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 414 FPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
.++ +.+..+. +|.+.|++++|+|++.+|||||.||+|+||.-
T Consensus 352 ~~~----------~~v~~l~------------gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 352 PTM----------AKVAELK------------GHTSRVLSLTMSPDGATVASAAADETLRLWRC 393 (420)
T ss_dssp TTC----------CEEEEEC------------CCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred CCC----------cEEEEEc------------CCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 998 8888888 99999999999999999999999999999954
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-31 Score=251.10 Aligned_cols=248 Identities=14% Similarity=0.183 Sum_probs=187.4
Q ss_pred ccCCCCCCceeEEEeeCCC---CCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCc
Q 037120 149 LLHIPLPQQLDAVRWNLAN---QDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTS 225 (489)
Q Consensus 149 ~~h~~~~~~V~~v~~~~~~---~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 225 (489)
.+|... |.+++|+|++ ..+|++|+.| ++|+|||+... .+. ....+.+|...|.+++|++++.
T Consensus 29 ~~H~~~---V~~v~~~~~~~~~~~~l~tgs~D-~~v~vW~~~~~------~~~----~~~~l~gh~~~v~~~~~~~~~~- 93 (321)
T 3ow8_A 29 QAHDDA---IWSVAWGTNKKENSETVVTGSLD-DLVKVWKWRDE------RLD----LQWSLEGHQLGVVSVDISHTLP- 93 (321)
T ss_dssp TSSSSC---EEEEEEC-------CEEEEEETT-SCEEEEEEETT------EEE----EEEEECCCSSCEEEEEECSSSS-
T ss_pred ccCCCc---EEEEEEecCCCCCCCEEEEEcCC-CCEEEEECCCC------Cee----eeeeeccCCCCEEEEEECCCCC-
Confidence 356666 9999999853 3489999998 99999999432 111 1223489999999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCe
Q 037120 226 RLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPL 305 (489)
Q Consensus 226 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v 305 (489)
++++++.|++|++||+++++ ++..+..|...+.+++|+|+++++++++.||.|++||+++++....+..+... |
T Consensus 94 ~l~s~s~D~~i~lWd~~~~~--~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~----v 167 (321)
T 3ow8_A 94 IAASSSLDAHIRLWDLENGK--QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF----I 167 (321)
T ss_dssp EEEEEETTSEEEEEETTTTE--EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSC----E
T ss_pred EEEEEeCCCcEEEEECCCCC--EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCce----E
Confidence 99999999999999999876 56667788889999999999999999999999999999999888778777766 8
Q ss_pred eEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccC
Q 037120 306 TSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLH 385 (489)
Q Consensus 306 ~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (489)
.+++|+|+++++++ ++.++. ..+++..++........ ....
T Consensus 168 ~~~~~spdg~~las--------------------------g~~dg~-i~iwd~~~~~~~~~~~~------------h~~~ 208 (321)
T 3ow8_A 168 LSIAYSPDGKYLAS--------------------------GAIDGI-INIFDIATGKLLHTLEG------------HAMP 208 (321)
T ss_dssp EEEEECTTSSEEEE--------------------------EETTSC-EEEEETTTTEEEEEECC------------CSSC
T ss_pred EEEEECCCCCEEEE--------------------------EcCCCe-EEEEECCCCcEEEEEcc------------cCCc
Confidence 88887777766653 222221 11222222221111000 0012
Q ss_pred CCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEe
Q 037120 386 LRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVA 465 (489)
Q Consensus 386 ~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~s 465 (489)
+..++|+|+ +.++++|+.|+.|+|||+... +....+. +|...|++++|+|++.+|++
T Consensus 209 v~~l~~spd-~~~l~s~s~dg~i~iwd~~~~----------~~~~~~~------------~h~~~v~~~~~sp~~~~l~s 265 (321)
T 3ow8_A 209 IRSLTFSPD-SQLLVTASDDGYIKIYDVQHA----------NLAGTLS------------GHASWVLNVAFCPDDTHFVS 265 (321)
T ss_dssp CCEEEECTT-SCEEEEECTTSCEEEEETTTC----------CEEEEEC------------CCSSCEEEEEECTTSSEEEE
T ss_pred eeEEEEcCC-CCEEEEEcCCCeEEEEECCCc----------ceeEEEc------------CCCCceEEEEECCCCCEEEE
Confidence 234566665 567889999999999999988 6676777 99999999999999999999
Q ss_pred ccCcceeEEEeccc
Q 037120 466 GTKNSSLLVVSQKQ 479 (489)
Q Consensus 466 gs~dg~i~v~~~~~ 479 (489)
|+.||+|+||..+.
T Consensus 266 ~s~D~~v~iwd~~~ 279 (321)
T 3ow8_A 266 SSSDKSVKVWDVGT 279 (321)
T ss_dssp EETTSCEEEEETTT
T ss_pred EeCCCcEEEEeCCC
Confidence 99999999998654
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-30 Score=244.69 Aligned_cols=281 Identities=10% Similarity=0.124 Sum_probs=199.4
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
.++|+||+++ +||+|. |++|+|||+.++++... .....|... |++++|+|+++ .+++|+.|
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~------------~~~~~~~~~---V~~v~~~~~~~-~l~sgs~D- 88 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQL------------LQMEQPGEY---ISSVAWIKEGN-YLAVGTSS- 88 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEE------------EECCSTTCC---EEEEEECTTSS-EEEEEETT-
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEE------------EEecCCCCe---EEEEEECCCCC-EEEEEECC-
Confidence 5789999987 777764 99999999998554431 112234444 99999999986 88888888
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCc
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGT 258 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~ 258 (489)
|+|++||+..+ +. ...+.+|...+.++.+ ++. .+++++.++.+++|+...... .+..+.+|...
T Consensus 89 g~v~iw~~~~~-----~~-------~~~~~~h~~~~~~~~~--~~~-~l~s~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 152 (318)
T 4ggc_A 89 AEVQLWDVQQQ-----KR-------LRNMTSHSARVGSLSW--NSY-ILSSGSRSGHIHHHDVRVAEH-HVATLSGHSQE 152 (318)
T ss_dssp SEEEEEETTTT-----EE-------EEEEECCSSCEEEEEE--ETT-EEEEEETTSEEEEEETTSSSC-EEEEEECCSSC
T ss_pred CcEEEeecCCc-----ee-------EEEecCccceEEEeec--CCC-EEEEEecCCceEeeecCCCce-eEEEEcCccCc
Confidence 99999999432 22 1223678888877655 456 899999999999999987643 34466799999
Q ss_pred eeEEEEeecCCEEEEEeCCCeEEEEEcCCCccc----ceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEE
Q 037120 259 LNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTS----APFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSI 334 (489)
Q Consensus 259 v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~----~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~ 334 (489)
+.++.++++++++++++.||+|++||+++++.. .....+... |.++.++|++..+......
T Consensus 153 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~----------- 217 (318)
T 4ggc_A 153 VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGA----VKAVAWCPWQSNVLATGGG----------- 217 (318)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSC----EEEEEECTTSTTEEEEEEC-----------
T ss_pred eEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCc----eEEEEecCCCCcEEEEEec-----------
Confidence 999999999999999999999999999987652 223344444 7777777766544211000
Q ss_pred EeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEE-eecCCCcEEEEec
Q 037120 335 DLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAV-GSSSDHGIHLLDF 413 (489)
Q Consensus 335 ~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-sgs~d~~i~vwd~ 413 (489)
.....+ .+++............ . .......|.+.+..+++ +|+.|+.|+|||+
T Consensus 218 ---~~~~~i----------~lwd~~~~~~~~~~~~------~-------~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~ 271 (318)
T 4ggc_A 218 ---TSDRHI----------RIWNVCSGACLSAVDA------H-------SQVCSILWSPHYKELISGHGFAQNQLVIWKY 271 (318)
T ss_dssp ---TTTCEE----------EEEETTTCCEEEEEEC------S-------SCEEEEEEETTTTEEEEEECTTTCCEEEEET
T ss_pred ---CCCCEE----------EEEecccccccccccc------e-------eeeeeeeecccccceEEEEEcCCCEEEEEEC
Confidence 000011 1222111111110000 0 11223456666666554 4668999999999
Q ss_pred cCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 414 FPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
.++ +.+..+. +|.+.|++++|+|++.+|||||.||+|+||.-
T Consensus 272 ~~~----------~~~~~l~------------gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 272 PTM----------AKVAELK------------GHTSRVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp TTC----------CEEEEEC------------CCSSCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred CCC----------cEEEEEc------------CCCCCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 999 8888888 99999999999999999999999999999964
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-31 Score=279.40 Aligned_cols=190 Identities=14% Similarity=0.085 Sum_probs=147.5
Q ss_pred cCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 94 FGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
.+...|++++|+|+|++||+|+.||.|+||+....+.... ..|... |.+++|+| +. +|++
T Consensus 15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~---------------~~~~~~---V~~l~fsp-g~-~L~S 74 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK---------------LEDRSA---IKEMRFVK-GI-YLVV 74 (902)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEE---------------CSSCCC---EEEEEEET-TT-EEEE
T ss_pred CCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE---------------cCCCCC---EEEEEEcC-CC-EEEE
Confidence 4567799999999999999999999999999876433221 113333 99999999 65 8888
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce----
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL---- 249 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---- 249 (489)
++.| ++|++||+... ..+.. + . |...|++++|+|++. +|++|+.||.|++||+++++....
T Consensus 75 ~s~D-~~v~lWd~~~~-----~~~~~---~----~-~~~~V~~v~~sp~g~-~l~sgs~dg~V~lwd~~~~~~~~~~i~~ 139 (902)
T 2oaj_A 75 INAK-DTVYVLSLYSQ-----KVLTT---V----F-VPGKITSIDTDASLD-WMLIGLQNGSMIVYDIDRDQLSSFKLDN 139 (902)
T ss_dssp EETT-CEEEEEETTTC-----SEEEE---E----E-CSSCEEEEECCTTCS-EEEEEETTSCEEEEETTTTEEEEEEECC
T ss_pred EECc-CeEEEEECCCC-----cEEEE---E----c-CCCCEEEEEECCCCC-EEEEEcCCCcEEEEECCCCccccceecc
Confidence 8888 99999999432 22111 1 2 557899999999999 999999999999999998652101
Q ss_pred -----eeccCCCCceeEEEEeec-CCEEEEEeCCCeEEEEEcCCCcccceeecCCc--------------cCCCCeeEEE
Q 037120 250 -----ELSTGSHGTLNSIQLHAE-NQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKE--------------VCHLPLTSLK 309 (489)
Q Consensus 250 -----~~~~~h~~~v~~~~~~p~-~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~--------------~~~~~v~~l~ 309 (489)
....+|.+.|.+++|+|+ +..+++|+.||.| +||+++++.+..+..|.. .+..+|++++
T Consensus 140 ~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~ 218 (902)
T 2oaj_A 140 LQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSL 218 (902)
T ss_dssp HHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEE
T ss_pred ccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEE
Confidence 234579999999999996 4688888889999 999999988777765510 0013499999
Q ss_pred eCCCCcceee
Q 037120 310 LASMLEKIGT 319 (489)
Q Consensus 310 ~~~~~~~i~~ 319 (489)
|+|+|..+++
T Consensus 219 fspdg~~las 228 (902)
T 2oaj_A 219 YHPNSLHIIT 228 (902)
T ss_dssp ECTTSSEEEE
T ss_pred EcCCCCEEEE
Confidence 9999988843
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-32 Score=270.33 Aligned_cols=301 Identities=9% Similarity=0.051 Sum_probs=193.5
Q ss_pred cCCCceeEEEECCC------CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCC
Q 037120 94 FGKPGISALDFDCK------GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLAN 167 (489)
Q Consensus 94 ~~~~~V~~~~fs~~------g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~ 167 (489)
.+...|.+++|+|+ +.+||+|+.||+|+|||+.......... .. ...+...+.+|... |++++|++++
T Consensus 205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~-~~--~~~p~~~l~~h~~~---v~sv~~s~~~ 278 (524)
T 2j04_B 205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVF-KM--CEKPSLTLSLADSL---ITTFDFLSPT 278 (524)
T ss_dssp ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEE-EC--CCSCSEEECCTTTC---EEEEEESSSS
T ss_pred ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccc-ee--ecCceEEEEcCCCC---EEEEEecCCC
Confidence 34566999999997 5799999999999999998743221000 00 01122234556666 9999999863
Q ss_pred CCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEE--EEecCCCcEEEEEeCCCcEEEEECCCCC
Q 037120 168 QDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDL--AFSAVNTSRLIASDTHGVVNIWDRRVGV 245 (489)
Q Consensus 168 ~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~--~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 245 (489)
.|++|+.| |+|++||++.... +.. .+.+|...|++| +|+|++..+|+|++.|++|+|||+++++
T Consensus 279 --~lasgs~D-gtV~lWD~~~~~~-------~~~----~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~ 344 (524)
T 2j04_B 279 --TVVCGFKN-GFVAEFDLTDPEV-------PSF----YDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIA 344 (524)
T ss_dssp --EEEEEETT-SEEEEEETTBCSS-------CSE----EEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHH
T ss_pred --eEEEEeCC-CEEEEEECCCCCC-------ceE----EeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCC
Confidence 78999988 9999999953211 011 237799999999 5677772399999999999999999865
Q ss_pred cCceeeccCCCC--ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeecccc
Q 037120 246 LPSLELSTGSHG--TLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQ 323 (489)
Q Consensus 246 ~~~~~~~~~h~~--~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~ 323 (489)
+...+.+|.. .|.+++|+|+++.+++++.|++|++||++++.++..+.+|... |++|+|+|++..+++....
T Consensus 345 --~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~----V~sva~Sp~g~~l~Sgs~D 418 (524)
T 2j04_B 345 --TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETT----ITAIGVSRLHPMVLAGSAD 418 (524)
T ss_dssp --HHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSC----EEEEECCSSCCBCEEEETT
T ss_pred --cccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCc----eEEEEeCCCCCeEEEEECC
Confidence 4444445543 5889999999999999999999999999999888888888877 8888888887766542211
Q ss_pred ceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeec
Q 037120 324 SKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSS 403 (489)
Q Consensus 324 ~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs 403 (489)
..+. +++.... ....+.....+. ....+..++|+|+++.+.+ .
T Consensus 419 gtv~---------------------------lwd~~~~-~~~~~~~~~~~~-------~~~~v~~v~~sp~g~~~~~--~ 461 (524)
T 2j04_B 419 GSLI---------------------------ITNAARR-LLHGIKNSSATQ-------KSLRLWKWDYSIKDDKYRI--D 461 (524)
T ss_dssp TEEE---------------------------CCBSCSS-TTTCC------C-------CCCEEEECBCCSSSCEEEE--C
T ss_pred CEEE---------------------------EEechHh-hccccccCccce-------eeeEEEEeccCCCCCeEEc--c
Confidence 1111 1111000 000000000000 0001122445555553321 1
Q ss_pred CCCcEEEEecc-CCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCC---eEEeccCcceeEEEeccc
Q 037120 404 SDHGIHLLDFF-PGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN---TIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 404 ~d~~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~---~i~sgs~dg~i~v~~~~~ 479 (489)
. .+++|+.. ++ ..+..+. +|...|++|+|+|++. .+|+|+.||.|+||.-..
T Consensus 462 ~--~~~~~~~~~~g----------~~~~~l~------------gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 462 S--SYEVYPLTVND----------VSKAKID------------AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp C--CCCCCC-----------------------------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred C--CceecccccCC----------cceeeec------------CCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 2 22333332 23 3445556 8999999999999965 999999999999998776
Q ss_pred cc
Q 037120 480 QC 481 (489)
Q Consensus 480 ~~ 481 (489)
+.
T Consensus 518 ~~ 519 (524)
T 2j04_B 518 EH 519 (524)
T ss_dssp C-
T ss_pred cc
Confidence 64
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-31 Score=249.99 Aligned_cols=200 Identities=14% Similarity=0.128 Sum_probs=149.2
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC-CCCE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA-NQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~-~~~~ 170 (489)
+..|...|++++|+|+|++||+|+.||.|+|||+.+.... ......+.+|... |.+++|+|. ...+
T Consensus 7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~----------~~~~~~~~~~~~~---v~~~~~~~~~d~~~ 73 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSN----------WELSDSWRAHDSS---IVAIDWASPEYGRI 73 (351)
T ss_dssp ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCC----------EEEEEEEECCSSC---EEEEEECCGGGCSE
T ss_pred CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCc----------ceecceeccCCCc---EEEEEEcCCCCCCE
Confidence 4557778999999999999999999999999999863211 1112223456666 999999994 2358
Q ss_pred EEEEecCCCEEEEEEeccCCCCC-ceeeeeceeeeeecCCcccCeeEEEEecC--CCcEEEEEeCCCcEEEEECCCCCcC
Q 037120 171 VACASTRSNVVSIYDIGYISDEP-VEVLKTRRSVTVVGSDVQKGLSDLAFSAV--NTSRLIASDTHGVVNIWDRRVGVLP 247 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~ 247 (489)
|++++.| |+|++||+....... ..... ....+.+|...|.+++|+|+ +. +|++++.||.|++||+++++..
T Consensus 74 l~s~~~d-g~v~vwd~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~ 147 (351)
T 3f3f_A 74 IASASYD-KTVKLWEEDPDQEECSGRRWN----KLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDL 147 (351)
T ss_dssp EEEEETT-SCEEEEEECTTSCTTSSCSEE----EEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCT
T ss_pred EEEEcCC-CeEEEEecCCCcccccccCcc----eeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHh
Confidence 8888888 999999996543211 01111 22334789999999999999 87 9999999999999999987532
Q ss_pred -cee----------eccCCCCceeEEEEeec---CCEEEEEeCCCeEEEEEcCCCcc--cceeecCCccCCCCeeEEEeC
Q 037120 248 -SLE----------LSTGSHGTLNSIQLHAE---NQIIFAAGKHGSIYLWDLRGGRT--SAPFHNHKEVCHLPLTSLKLA 311 (489)
Q Consensus 248 -~~~----------~~~~h~~~v~~~~~~p~---~~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~~~~v~~l~~~ 311 (489)
.+. ....|...+.+++|+|+ +..+++++.|+.+.+|+...++. +..+.+|... |++++|+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----i~~~~~~ 223 (351)
T 3f3f_A 148 RSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSL----IRSISWA 223 (351)
T ss_dssp TCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSC----EEEEEEC
T ss_pred ccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcc----eeEEEEC
Confidence 110 01267889999999997 99999999999998888877654 5566666655 7777766
Q ss_pred CCC
Q 037120 312 SML 314 (489)
Q Consensus 312 ~~~ 314 (489)
|++
T Consensus 224 p~~ 226 (351)
T 3f3f_A 224 PSI 226 (351)
T ss_dssp CCS
T ss_pred CCC
Confidence 654
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-31 Score=252.45 Aligned_cols=278 Identities=12% Similarity=0.100 Sum_probs=187.9
Q ss_pred ccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 93 SFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
..|...|.+++|+|+|++||+|+.|++|+|||+..... .....+.+|... |.+++|+|++. +|+
T Consensus 58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~------------~~~~~~~~h~~~---v~~v~~sp~~~-~l~ 121 (345)
T 3fm0_A 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDF------------ECVTTLEGHENE---VKSVAWAPSGN-LLA 121 (345)
T ss_dssp SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-E------------EEEEEECCCSSC---EEEEEECTTSS-EEE
T ss_pred cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCe------------EEEEEccCCCCC---ceEEEEeCCCC-EEE
Confidence 34667799999999999999999999999999876321 112223556666 99999999985 888
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeec
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELS 252 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 252 (489)
+++.| ++|++||+.... ... ....+.+|...|.+++|+|++. +|++++.|+.|++||.+.++..+...+
T Consensus 122 s~s~D-~~v~iwd~~~~~-----~~~----~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~i~~w~~~~~~~~~~~~~ 190 (345)
T 3fm0_A 122 TCSRD-KSVWVWEVDEED-----EYE----CVSVLNSHTQDVKHVVWHPSQE-LLASASYDDTVKLYREEEDDWVCCATL 190 (345)
T ss_dssp EEETT-SCEEEEEECTTS-----CEE----EEEEECCCCSCEEEEEECSSSS-CEEEEETTSCEEEEEEETTEEEEEEEE
T ss_pred EEECC-CeEEEEECCCCC-----CeE----EEEEecCcCCCeEEEEECCCCC-EEEEEeCCCcEEEEEecCCCEEEEEEe
Confidence 88888 999999995331 111 1223478999999999999999 999999999999999987654455567
Q ss_pred cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeecccee
Q 037120 253 TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIH 332 (489)
Q Consensus 253 ~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~ 332 (489)
.+|...|.+++|+|++++|++++.|++|++||.........+... ...+....+.. ....+...|.
T Consensus 191 ~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~-----------~~~~~~~~~~~---~~~~h~~~v~ 256 (345)
T 3fm0_A 191 EGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACS-----------GSDPSWKCICT---LSGFHSRTIY 256 (345)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC--------------CEEEEEEE---ECSSCSSCEE
T ss_pred cCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceee-----------ccCCccceeEE---ecCCCCCcEE
Confidence 799999999999999999999999999999997543321111100 00000011111 1112445677
Q ss_pred EEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCC-CCccccccCCCcceeecCCcEEEEeecCCCcEEEE
Q 037120 333 SIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSD-SNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLL 411 (489)
Q Consensus 333 ~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vw 411 (489)
.++|+|++..+++.+.|+. .++++...+..... +.+... .....+...+..++|+|++..++++|+.|+.|++|
T Consensus 257 ~v~~~~~~~~l~s~~~d~~-i~vw~~~~~~~~~~----~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W 331 (345)
T 3fm0_A 257 DIAWCQLTGALATACGDDA-IRVFQEDPNSDPQQ----PTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFW 331 (345)
T ss_dssp EEEECTTTCCEEEEETTSC-EEEEEECTTSCTTS----CCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEE
T ss_pred EEEEecCCCEEEEEeCCCe-EEEEEeCCCCCcce----eeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEE
Confidence 7777777777776665544 22333221110000 000000 00000112345578888888899999999999999
Q ss_pred eccCC
Q 037120 412 DFFPG 416 (489)
Q Consensus 412 d~~~~ 416 (489)
++.+.
T Consensus 332 ~~~~~ 336 (345)
T 3fm0_A 332 KYQRP 336 (345)
T ss_dssp EECC-
T ss_pred EecCC
Confidence 99887
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-31 Score=245.65 Aligned_cols=284 Identities=12% Similarity=0.151 Sum_probs=207.4
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|...|.+++| +++.+||+|+.||.|+|||+.+..... .+..|... |.+++|+|++. .+
T Consensus 14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~--------------~~~~~~~~---v~~~~~~~~~~-~l 74 (313)
T 3odt_A 14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT--------------VVYTGQGF---LNSVCYDSEKE-LL 74 (313)
T ss_dssp ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE--------------EEEECSSC---EEEEEEETTTT-EE
T ss_pred hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE--------------EeecCCcc---EEEEEECCCCC-EE
Confidence 5667788999999 999999999999999999997743332 12345444 99999999986 78
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++.| |.|++|++...... . .. ..+.+|...|.+++| ++. ++++++.|+.|++|| .++ ....
T Consensus 75 ~~~~~d-g~i~~~~~~~~~~~--~---~~----~~~~~~~~~i~~~~~--~~~-~l~~~~~d~~i~~~d--~~~--~~~~ 137 (313)
T 3odt_A 75 LFGGKD-TMINGVPLFATSGE--D---PL----YTLIGHQGNVCSLSF--QDG-VVISGSWDKTAKVWK--EGS--LVYN 137 (313)
T ss_dssp EEEETT-SCEEEEETTCCTTS--C---C-----CEECCCSSCEEEEEE--ETT-EEEEEETTSEEEEEE--TTE--EEEE
T ss_pred EEecCC-CeEEEEEeeecCCC--C---cc----cchhhcccCEEEEEe--cCC-EEEEEeCCCCEEEEc--CCc--EEEe
Confidence 888888 99999999543211 1 11 223779999999999 456 899999999999999 222 4556
Q ss_pred ccCCCCceeEEEEee-cCCEEEEEeCCCeEEEEEcCCCcccceeec-CCccCCCCeeEEEeCCCCcceeeccccceeecc
Q 037120 252 STGSHGTLNSIQLHA-ENQIIFAAGKHGSIYLWDLRGGRTSAPFHN-HKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQ 329 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p-~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~ 329 (489)
+..|...+.+++|+| ++.++++++.||.|++||. .+.+..+.. |... +.+++|+|++. +......
T Consensus 138 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~~~~~----i~~~~~~~~~~-~~~~~~d------ 204 (313)
T 3odt_A 138 LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGIHNDV----VRHLAVVDDGH-FISCSND------ 204 (313)
T ss_dssp EECCSSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSSCSSC----EEEEEEEETTE-EEEEETT------
T ss_pred cccCCCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEeccCccc----EEEEEEcCCCe-EEEccCC------
Confidence 668999999999999 9999999999999999993 344556655 5655 88888888876 3221110
Q ss_pred ceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEE
Q 037120 330 EIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIH 409 (489)
Q Consensus 330 ~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~ 409 (489)
..+..+..... ..+..+.++.. .+..++|+|++ .+++|+.|+.|+
T Consensus 205 -----------g~i~i~d~~~~--~~~~~~~~~~~--------------------~i~~~~~~~~~--~l~~~~~dg~v~ 249 (313)
T 3odt_A 205 -----------GLIKLVDMHTG--DVLRTYEGHES--------------------FVYCIKLLPNG--DIVSCGEDRTVR 249 (313)
T ss_dssp -----------SEEEEEETTTC--CEEEEEECCSS--------------------CEEEEEECTTS--CEEEEETTSEEE
T ss_pred -----------CeEEEEECCch--hhhhhhhcCCc--------------------eEEEEEEecCC--CEEEEecCCEEE
Confidence 11111111110 01111111211 12335666766 477889999999
Q ss_pred EEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccccc
Q 037120 410 LLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQCT 482 (489)
Q Consensus 410 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~~ 482 (489)
+||+.++ +.+..+. .|...|.+++|+|++. +++++.||.|.+|..+....
T Consensus 250 iwd~~~~----------~~~~~~~------------~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~ 299 (313)
T 3odt_A 250 IWSKENG----------SLKQVIT------------LPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRW 299 (313)
T ss_dssp EECTTTC----------CEEEEEE------------CSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGC
T ss_pred EEECCCC----------ceeEEEe------------ccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCce
Confidence 9999988 7777777 8999999999999998 66799999999998776543
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-32 Score=257.95 Aligned_cols=282 Identities=11% Similarity=0.144 Sum_probs=179.3
Q ss_pred EEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC----
Q 037120 102 LDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR---- 177 (489)
Q Consensus 102 ~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d---- 177 (489)
+.+.+++.++.+ +.+.....|++... . ...|... |.+++|+|+|. +|++++.|
T Consensus 11 ~d~g~~~~~~~~-~g~~~~~~w~~p~~------------~------p~~H~~~---V~~v~fSpDG~-~las~s~d~~~~ 67 (357)
T 4g56_B 11 VDLGTENLYFQS-NGSSKGSAWGRPVT------------A------PACMEVQ---IGAVRYRRDGA-LLLAASSLSSRT 67 (357)
T ss_dssp ------------------------------------------------CCCSE---EEEEEECSSSC-EEEEEECSSSSS
T ss_pred CCCCccceEEec-CCCccccccCCCCC------------C------cccccCC---EEEEEECCCCC-EEEEEcCCCCcc
Confidence 345555545444 44667788987541 1 1345555 99999999996 88888863
Q ss_pred -CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee--eccC
Q 037120 178 -SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE--LSTG 254 (489)
Q Consensus 178 -~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~ 254 (489)
|++|++|+....... ..+ .....+|...|++++|+|++. +++++.||+|+|||+.+++..... ...+
T Consensus 68 wd~~v~~~~~~~~~~~--~~~------~~~~~~~~~~V~~~~~s~d~~--~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~ 137 (357)
T 4g56_B 68 WGGSIWVFKDPEGAPN--ESL------CTAGVQTEAGVTDVAWVSEKG--ILVASDSGAVELWEILEKESLLVNKFAKYE 137 (357)
T ss_dssp CCEEEEEESSCC---C--GGG------CSEEEECSSCEEEEEEETTTE--EEEEETTSCEEEC--------CCCCEEECC
T ss_pred ccCeEEEEECCCCCcc--eeE------ecccCCCCCCEEEEEEcCCCC--EEEEECCCEEEEeeccccceeEEEeeccCC
Confidence 278999987433211 111 111256888999999999875 667888999999999987633221 2338
Q ss_pred CCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCc-ceeeccccceeeccceeE
Q 037120 255 SHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLE-KIGTLKAQSKIVSQEIHS 333 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~-~i~~~~~~~~~~~~~i~~ 333 (489)
|...|++++|+|++++|++++.||+|++||+++++.+..+.+|... |++++|++++. .+.+
T Consensus 138 h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~----v~~v~~s~~~~~~~~s-------------- 199 (357)
T 4g56_B 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSE----VNCVAACPGKDTIFLS-------------- 199 (357)
T ss_dssp CSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEEECTTCSSCEEE--------------
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCC----EEEEEEccCCCceeee--------------
Confidence 9999999999999999999999999999999999999999998877 88888887764 2222
Q ss_pred EEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEec
Q 037120 334 IDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDF 413 (489)
Q Consensus 334 ~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~ 413 (489)
++.++ -..++++..+........ ... ......++|+|+++.++++|+.|+.|++||+
T Consensus 200 ------------~~~dg-~v~~wd~~~~~~~~~~~~----~~~------~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~ 256 (357)
T 4g56_B 200 ------------CGEDG-RILLWDTRKPKPATRIDF----CAS------DTIPTSVTWHPEKDDTFACGDETGNVSLVNI 256 (357)
T ss_dssp ------------EETTS-CEEECCTTSSSCBCBCCC----TTC------CSCEEEEEECTTSTTEEEEEESSSCEEEEES
T ss_pred ------------eccCC-ceEEEECCCCceeeeeee----ccc------cccccchhhhhcccceEEEeecccceeEEEC
Confidence 11111 112233322221111000 000 0123457888988999999999999999999
Q ss_pred cCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCC-CeEEeccCcceeEEEeccc
Q 037120 414 FPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLN-NTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~-~~i~sgs~dg~i~v~~~~~ 479 (489)
.++ +.+..+. +|...|++++|+|++ .+||+|+.||+|+||..+.
T Consensus 257 ~~~----------~~~~~~~------------~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~ 301 (357)
T 4g56_B 257 KNP----------DSAQTSA------------VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADF 301 (357)
T ss_dssp SCG----------GGCEEEC------------CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTS
T ss_pred CCC----------cEeEEEe------------ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC
Confidence 988 7777777 899999999999998 5799999999999997654
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-32 Score=269.00 Aligned_cols=261 Identities=11% Similarity=0.135 Sum_probs=185.2
Q ss_pred CCceeEEEECCCC---------cEEEE-------------------EecCCeEEEEeCCCcccccCCCCCCCCCcccccc
Q 037120 96 KPGISALDFDCKG---------IYLVS-------------------ATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSK 147 (489)
Q Consensus 96 ~~~V~~~~fs~~g---------~~la~-------------------g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~ 147 (489)
...|.+++|+|++ ++||+ |+.|++|+|||+.+..... .....
T Consensus 133 ~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~----------~~~~~ 202 (524)
T 2j04_B 133 GGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHC----------VKVQT 202 (524)
T ss_dssp CC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCE----------EEEEE
T ss_pred CCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCc----------eEEEE
Confidence 3458888888876 66666 4478899999987632211 00011
Q ss_pred cccCCCCCCceeEEEeeCCC-----CCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecC
Q 037120 148 HLLHIPLPQQLDAVRWNLAN-----QDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAV 222 (489)
Q Consensus 148 ~~~h~~~~~~V~~v~~~~~~-----~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 222 (489)
+.+|... |.+++|+|++ ..+|++++.| |+|+|||+..........+. .......+.+|...|++++|+++
T Consensus 203 l~~~~~~---V~~v~wsp~~~~~~~~~~LAs~s~D-gtvrlWd~~~~~~~~~~~~~-~~~p~~~l~~h~~~v~sv~~s~~ 277 (524)
T 2j04_B 203 IVHSFGE---VWDLKWHEGCHAPHLVGCLSFVSQE-GTINFLEIIDNATDVHVFKM-CEKPSLTLSLADSLITTFDFLSP 277 (524)
T ss_dssp EEECCCS---EEEEEECSSCCCSSSSCEEEEEETT-SCEEEEECCCCSSSSSEEEC-CCSCSEEECCTTTCEEEEEESSS
T ss_pred EEecCCc---EEEEEECCCCCCCCCCceEEEEecC-CeEEEEEcCCCcccccccee-ecCceEEEEcCCCCEEEEEecCC
Confidence 2335555 9999999972 2589999988 99999999543211100100 00111234789999999999985
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEE--EEeecC-CEEEEEeCCCeEEEEEcCCCcccceeecCCc
Q 037120 223 NTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSI--QLHAEN-QIIFAAGKHGSIYLWDLRGGRTSAPFHNHKE 299 (489)
Q Consensus 223 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~--~~~p~~-~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~ 299 (489)
. .|++|+.||+|++||++++..+ ...+.+|...|.++ +|+|++ .+|++++.|++|+|||+++++++..+.+|..
T Consensus 278 -~-~lasgs~DgtV~lWD~~~~~~~-~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~ 354 (524)
T 2j04_B 278 -T-TVVCGFKNGFVAEFDLTDPEVP-SFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFR 354 (524)
T ss_dssp -S-EEEEEETTSEEEEEETTBCSSC-SEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECS
T ss_pred -C-eEEEEeCCCEEEEEECCCCCCc-eEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccc
Confidence 4 7999999999999999976433 33566899999999 578887 8899999999999999998776665554431
Q ss_pred cCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCc
Q 037120 300 VCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNN 379 (489)
Q Consensus 300 ~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (489)
. ..|.++ +|+|+
T Consensus 355 ~--~~v~~v--------------------------~fsp~---------------------------------------- 366 (524)
T 2j04_B 355 G--SNLVPV--------------------------VYCPQ---------------------------------------- 366 (524)
T ss_dssp C--CSCCCE--------------------------EEETT----------------------------------------
T ss_pred c--Ccccce--------------------------EeCCC----------------------------------------
Confidence 1 002222 22222
Q ss_pred cccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCC
Q 037120 380 SADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPL 459 (489)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~ 459 (489)
+..+++++.|++|++||+..+ ..+..+. +|.+.|++|+|+|+
T Consensus 367 ----------------~~~l~s~~~d~tv~lwd~~~~----------~~~~~l~------------gH~~~V~sva~Sp~ 408 (524)
T 2j04_B 367 ----------------IYSYIYSDGASSLRAVPSRAA----------FAVHPLV------------SRETTITAIGVSRL 408 (524)
T ss_dssp ----------------TTEEEEECSSSEEEEEETTCT----------TCCEEEE------------ECSSCEEEEECCSS
T ss_pred ----------------cCeEEEeCCCCcEEEEECccc----------ccceeee------------cCCCceEEEEeCCC
Confidence 223667788999999999988 6666666 89999999999999
Q ss_pred CCeEEeccCcceeEEEecccc
Q 037120 460 NNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 460 ~~~i~sgs~dg~i~v~~~~~~ 480 (489)
++.|++|+.||+|+||....+
T Consensus 409 g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 409 HPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp CCBCEEEETTTEEECCBSCSS
T ss_pred CCeEEEEECCCEEEEEechHh
Confidence 999999999999999976554
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-31 Score=260.21 Aligned_cols=263 Identities=13% Similarity=0.130 Sum_probs=177.0
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeC--------CCCCE
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNL--------ANQDE 170 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~--------~~~~~ 170 (489)
+....+++++.+||+|+.|++|+|||......... .....+.+|... |.+|+|+| ++ .+
T Consensus 92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~---------~~~~~~~gH~~~---v~~v~~~p~~~~~~~~d~-~~ 158 (393)
T 4gq1_A 92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQ---------HVLGGKSGHHNF---VNDIDIADVYSADNRLAE-QV 158 (393)
T ss_dssp -----CCEEEEEEEEEETTSCEEEEEEETTEEEEE---------EEECTTTSCSSC---EEEEEEEEEECTTCSEEE-EE
T ss_pred cceeecCCCCCEEEEEeCCCcEEEEECCCCcccee---------eeecccCCCCCc---eEEEEEccccccccCCCC-CE
Confidence 55566777889999999999999999987543321 111223567777 99999998 44 48
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce-
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL- 249 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~- 249 (489)
|++++.| ++|+|||++.. .. ...+.+|...|.+++|+|++.++|++++.|++|++||+++++....
T Consensus 159 las~s~D-~tv~~Wd~~~~-----~~-------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~ 225 (393)
T 4gq1_A 159 IASVGDD-CTLIIWRLTDE-----GP-------ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEEN 225 (393)
T ss_dssp EEEEETT-SEEEEEEEETT-----EE-------EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-----
T ss_pred EEEEECC-CeEEEEECCCC-----ce-------eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccc
Confidence 9999988 99999999432 11 1112568889999999999876899999999999999988642100
Q ss_pred ----------------------eeccCCCCceeEEEEe-ecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCee
Q 037120 250 ----------------------ELSTGSHGTLNSIQLH-AENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLT 306 (489)
Q Consensus 250 ----------------------~~~~~h~~~v~~~~~~-p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 306 (489)
....+|...+.++.|+ |++..+++++.|+++++||+..++....+..|... +.
T Consensus 226 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~----~~ 301 (393)
T 4gq1_A 226 SQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMK----LG 301 (393)
T ss_dssp -----CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------------
T ss_pred cccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCc----cc
Confidence 0123677889999997 79999999999999999999998877777776655 66
Q ss_pred EEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCC
Q 037120 307 SLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHL 386 (489)
Q Consensus 307 ~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (489)
.+.+.|++..+.... + .....+..
T Consensus 302 ~~~~~~~~~~~~~~~--------------------~-------------------------~~~~~~~~----------- 325 (393)
T 4gq1_A 302 PKNLLPNVQGISLFP--------------------S-------------------------LLGACPHP----------- 325 (393)
T ss_dssp --CCSCSEEEECSSC--------------------C-------------------------SSCCEECS-----------
T ss_pred cEEEccccccccccC--------------------c-------------------------ceeEEEcc-----------
Confidence 666665543322100 0 00001111
Q ss_pred CcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEec
Q 037120 387 RKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAG 466 (489)
Q Consensus 387 ~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sg 466 (489)
+.++.++++|+.|+.|+|||+.++ +....+. +|..+|.+++|||++++||++
T Consensus 326 ------~~~~~~~~sgs~Dg~V~lwd~~~~----------~~~~~~~------------~~~~~V~svafspdG~~LA~a 377 (393)
T 4gq1_A 326 ------RYMDYFATAHSQHGLIQLINTYEK----------DSNSIPI------------QLGMPIVDFCWHQDGSHLAIA 377 (393)
T ss_dssp ------SCTTEEEEEETTTTEEEEEETTCT----------TCCEEEE------------ECSSCEEEEEECTTSSEEEEE
T ss_pred ------CCCCEEEEEECCCCEEEEEECCCC----------cEEEEec------------CCCCcEEEEEEcCCCCEEEEE
Confidence 123788999999999999999988 6665555 799999999999999999999
Q ss_pred cCcceeEEE
Q 037120 467 TKNSSLLVV 475 (489)
Q Consensus 467 s~dg~i~v~ 475 (489)
+.+|.+.+.
T Consensus 378 s~~Gv~lvr 386 (393)
T 4gq1_A 378 TEGSVLLTR 386 (393)
T ss_dssp ESSEEEEEE
T ss_pred eCCCeEEEE
Confidence 998876653
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-30 Score=253.95 Aligned_cols=283 Identities=11% Similarity=0.141 Sum_probs=205.2
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
+.+++|++ ..+++++.||.|+|||+.+...... .. ..|... |.+++|+|++. +|++++.|
T Consensus 96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~--------~~-----~~~~~~---v~~v~~s~~~~-~l~~~~~d- 155 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVALERNVYVWNADSGSVSAL--------AE-----TDESTY---VASVKWSHDGS-FLSVGLGN- 155 (401)
T ss_dssp CBCEEECT--TSEEEEEETTEEEEEETTTCCEEEE--------EE-----CCTTCC---EEEEEECTTSS-EEEEEETT-
T ss_pred EEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEe--------ee-----cCCCCC---EEEEEECCCCC-EEEEECCC-
Confidence 56677776 4588888999999999988544331 10 114444 99999999875 78888877
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCc
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGT 258 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~ 258 (489)
|.|++||+... .. ...+.+|...|.+++|+ +. .|++++.||.|++||++.... ....+.+|...
T Consensus 156 g~i~iwd~~~~-----~~-------~~~~~~~~~~v~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~~ 219 (401)
T 4aez_A 156 GLVDIYDVESQ-----TK-------LRTMAGHQARVGCLSWN--RH-VLSSGSRSGAIHHHDVRIANH-QIGTLQGHSSE 219 (401)
T ss_dssp SCEEEEETTTC-----CE-------EEEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEETTSSSC-EEEEEECCSSC
T ss_pred CeEEEEECcCC-----eE-------EEEecCCCCceEEEEEC--CC-EEEEEcCCCCEEEEecccCcc-eeeEEcCCCCC
Confidence 99999999432 11 12236799999999994 45 999999999999999996433 35566789999
Q ss_pred eeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCC
Q 037120 259 LNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDP 338 (489)
Q Consensus 259 v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p 338 (489)
|.+++|+|+++++++++.||.|++||+++++.+..+..|... |.+++|+|++..+...... .
T Consensus 220 v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~----v~~~~~~p~~~~ll~~~~g--------------s 281 (401)
T 4aez_A 220 VCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAA----VKAVAWCPWQSNLLATGGG--------------T 281 (401)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSC----CCEEEECTTSTTEEEEECC--------------T
T ss_pred eeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcce----EEEEEECCCCCCEEEEecC--------------C
Confidence 999999999999999999999999999998888888888766 8899888877544321000 0
Q ss_pred CCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEe-ecCCCcEEEEeccCCC
Q 037120 339 SCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVG-SSSDHGIHLLDFFPGS 417 (489)
Q Consensus 339 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s-gs~d~~i~vwd~~~~~ 417 (489)
.+..+ .+++...+........ . ..+..++|+|++..++++ |+.|+.|+|||+.++
T Consensus 282 ~d~~i----------~i~d~~~~~~~~~~~~------~-------~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~- 337 (401)
T 4aez_A 282 MDKQI----------HFWNAATGARVNTVDA------G-------SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSS- 337 (401)
T ss_dssp TTCEE----------EEEETTTCCEEEEEEC------S-------SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETT-
T ss_pred CCCEE----------EEEECCCCCEEEEEeC------C-------CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCc-
Confidence 01111 1222222221111100 0 113446777776666655 668999999999886
Q ss_pred CCCeeeccCcccch--hhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccc
Q 037120 418 SSPSHVDYNEDIES--LSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 418 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
+.... +. +|.+.|++++|+|++.+|++|+.||.|.||..+..
T Consensus 338 ---------~~~~~~~~~------------~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 338 ---------GLTKQVDIP------------AHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp ---------EEEEEEEEE------------CCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred ---------cceeEEEec------------CCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 33333 34 89999999999999999999999999999976543
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=7.8e-31 Score=248.82 Aligned_cols=173 Identities=14% Similarity=0.172 Sum_probs=132.7
Q ss_pred CCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
|...|.+++|+|++++||+|+.|++|+|||+........ .......+.+|... |.+++|+|++. +|+++
T Consensus 57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~-------~~~~~~~~~~h~~~---V~~v~~sp~g~-~las~ 125 (330)
T 2hes_X 57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTF-------EMDLLAIIEGHENE---VKGVAWSNDGY-YLATC 125 (330)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------C-------CCEEEEEEC----C---EEEEEECTTSC-EEEEE
T ss_pred ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccc-------cceeEEEEcCCCCc---EEEEEECCCCC-EEEEE
Confidence 667799999999999999999999999999864211000 01112234567766 99999999985 88888
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccC
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 254 (489)
+.| ++|++||++..... .. ....+.+|...|++++|+|++. +|++++.|++|++||.+++...++..+.+
T Consensus 126 s~D-~~v~iwd~~~~~~~----~~----~~~~~~~h~~~v~~v~~~p~~~-~l~s~s~D~~i~iW~~~~~~~~~~~~~~~ 195 (330)
T 2hes_X 126 SRD-KSVWIWETDESGEE----YE----CISVLQEHSQDVKHVIWHPSEA-LLASSSYDDTVRIWKDYDDDWECVAVLNG 195 (330)
T ss_dssp ETT-SCEEEEECCTTCCC----CE----EEEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEEECC
T ss_pred eCC-CEEEEEeccCCCCC----eE----EEEEeccCCCceEEEEECCCCC-EEEEEcCCCeEEEEECCCCCeeEEEEccC
Confidence 888 99999999432111 11 1223478999999999999998 99999999999999998764336667789
Q ss_pred CCCceeEEEEeec--CCEEEEEeCCCeEEEEEcCCC
Q 037120 255 SHGTLNSIQLHAE--NQIIFAAGKHGSIYLWDLRGG 288 (489)
Q Consensus 255 h~~~v~~~~~~p~--~~~l~~~~~dg~i~lwd~~~~ 288 (489)
|...|.+++|+|+ +..+++++.|++|++||++++
T Consensus 196 h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~ 231 (330)
T 2hes_X 196 HEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD 231 (330)
T ss_dssp CSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred CCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence 9999999999998 678999999999999999764
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.98 E-value=6.2e-30 Score=263.37 Aligned_cols=317 Identities=14% Similarity=0.145 Sum_probs=222.4
Q ss_pred cccCCCceeEEEECCCCc-EEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC-CCC
Q 037120 92 RSFGKPGISALDFDCKGI-YLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA-NQD 169 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~-~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~-~~~ 169 (489)
+..+...|.+++|+|+++ +|++|+.||.|++||+.+.+... .+.+|......|.+++|+|+ +.
T Consensus 156 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~--------------~~~~~~~~~~~v~~~~~~~~~~~- 220 (615)
T 1pgu_A 156 VSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA--------------SDRTHHKQGSFVRDVEFSPDSGE- 220 (615)
T ss_dssp CCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE--------------EECSSSCTTCCEEEEEECSTTCC-
T ss_pred eecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceee--------------eecccCCCCceEEEEEECCCCCC-
Confidence 445667799999999998 89999999999999988754433 12345551123999999999 64
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecC---CcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCc
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGS---DVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVL 246 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~ 246 (489)
.+++++.| |.|++||+... ..+.... . +|...|.+++|+ ++. +|++++.|+.|++||+++++
T Consensus 221 ~l~~~~~d-g~i~vwd~~~~-----~~~~~~~------~~~~~~~~~v~~~~~~-~~~-~l~~~~~d~~i~~wd~~~~~- 285 (615)
T 1pgu_A 221 FVITVGSD-RKISCFDGKSG-----EFLKYIE------DDQEPVQGGIFALSWL-DSQ-KFATVGADATIRVWDVTTSK- 285 (615)
T ss_dssp EEEEEETT-CCEEEEETTTC-----CEEEECC------BTTBCCCSCEEEEEES-SSS-EEEEEETTSEEEEEETTTTE-
T ss_pred EEEEEeCC-CeEEEEECCCC-----CEeEEec------ccccccCCceEEEEEc-CCC-EEEEEcCCCcEEEEECCCCc-
Confidence 88888888 99999999432 2211110 3 789999999999 888 99999999999999999876
Q ss_pred CceeeccCC----CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCC---------
Q 037120 247 PSLELSTGS----HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASM--------- 313 (489)
Q Consensus 247 ~~~~~~~~h----~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--------- 313 (489)
.+..+..+ ...+.++.|. ++.++++++.||.|++||+++++.+..+.+|... |++++| |+
T Consensus 286 -~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~----v~~~~~-~~l~~~~~dg~ 358 (615)
T 1pgu_A 286 -CVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKG----ITALTV-NPLISGSYDGR 358 (615)
T ss_dssp -EEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSC----EEEEET-TTTEEEETTSC
T ss_pred -EEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCC----EEEEEe-cCcEEECCCCe
Confidence 44444444 4678888885 8999999999999999999988777777766544 555544 32
Q ss_pred ------------------------Ccceeecc------------------------------------------------
Q 037120 314 ------------------------LEKIGTLK------------------------------------------------ 321 (489)
Q Consensus 314 ------------------------~~~i~~~~------------------------------------------------ 321 (489)
+..+.+..
T Consensus 359 i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 438 (615)
T 1pgu_A 359 IMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGD 438 (615)
T ss_dssp EEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCC
T ss_pred EEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCc
Confidence 22221100
Q ss_pred -------------------------------------------ccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEe
Q 037120 322 -------------------------------------------AQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDV 358 (489)
Q Consensus 322 -------------------------------------------~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~ 358 (489)
.....+...|..++|+|++.++++++.++. ..+++.
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~-i~iw~~ 517 (615)
T 1pgu_A 439 IIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDL 517 (615)
T ss_dssp EEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEET
T ss_pred eeeecccCCCceEEEEcCCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCe-EEEeeC
Confidence 001112345666777777766666655443 223333
Q ss_pred eccceeeecCCCCCCcCCCCccccccCCCcceeecC---------CcEEEEeecCCCcEEEEeccCCCCCCeeeccCccc
Q 037120 359 YNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLST---------NSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDI 429 (489)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~ 429 (489)
..+........ .....+..++|+|. .+.++++|+.|+.|++||+.++. +.+
T Consensus 518 ~~~~~~~~~~~-----------~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---------~~~ 577 (615)
T 1pgu_A 518 QSREVKTSRWA-----------FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM---------KII 577 (615)
T ss_dssp TTTEEEECCSC-----------CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT---------CCE
T ss_pred CCCcceeEeec-----------CCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc---------eec
Confidence 33322211000 01123445677772 46788899999999999998751 344
Q ss_pred chhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 430 ESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 430 ~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
..+. +|.+.|++++|+|++. |++++.||.|.||.-+.
T Consensus 578 ~~~~------------~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 578 KALN------------AHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EETT------------SSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred hhhh------------cCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 4555 8999999999999999 99999999999998653
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-30 Score=248.23 Aligned_cols=193 Identities=13% Similarity=0.199 Sum_probs=151.9
Q ss_pred ccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 93 SFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
..+...|.+++|+|+|++||+|+.|+.|++|++.+.... ......+.+|... |.++.|++++ .++
T Consensus 94 ~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~----------~~~~~~~~~h~~~---v~~~~~~~~~--~l~ 158 (340)
T 1got_B 94 PLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN----------VRVSRELAGHTGY---LSCCRFLDDN--QIV 158 (340)
T ss_dssp ECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS----------CEEEEEEECCSSC---EEEEEEEETT--EEE
T ss_pred ecCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc----------ceeEEEecCCCcc---EEEEEECCCC--cEE
Confidence 445567999999999999999999999999999863211 1112233557666 9999999886 477
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeec
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELS 252 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 252 (489)
+++.| ++|++||+... . ....+.+|...|.+++|+|++. +|++|+.|+.|++||++++. +...+
T Consensus 159 s~s~d-~~i~~wd~~~~-----~-------~~~~~~~h~~~v~~~~~~~~~~-~l~sg~~d~~v~~wd~~~~~--~~~~~ 222 (340)
T 1got_B 159 TSSGD-TTCALWDIETG-----Q-------QTTTFTGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGM--CRQTF 222 (340)
T ss_dssp EEETT-SCEEEEETTTT-----E-------EEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCS--EEEEE
T ss_pred EEECC-CcEEEEECCCC-----c-------EEEEEcCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCe--eEEEE
Confidence 78877 99999999432 1 1223478999999999999998 99999999999999999876 67778
Q ss_pred cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCccee
Q 037120 253 TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 253 ~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
.+|...|++++|+|+++++++|+.||+|++||+++++.+..+..+... ..|++++|+|++.+++
T Consensus 223 ~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~--~~v~~~~~s~~g~~l~ 286 (340)
T 1got_B 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNII--CGITSVSFSKSGRLLL 286 (340)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC--SCEEEEEECTTSSEEE
T ss_pred cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcc--cceEEEEECCCCCEEE
Confidence 899999999999999999999999999999999988766555422211 2266666666665554
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3.7e-30 Score=252.50 Aligned_cols=292 Identities=12% Similarity=0.122 Sum_probs=199.4
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..+....|++++++||+|+.||.|+|||+.+..... .+.+|... |.+++|+|++. +|++++.
T Consensus 98 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--------------~~~~h~~~---v~~~~~~~~~~-~l~s~s~ 159 (420)
T 3vl1_A 98 DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQRE--------------IDQAHVSE---ITKLKFFPSGE-ALISSSQ 159 (420)
T ss_dssp CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEE--------------ETTSSSSC---EEEEEECTTSS-EEEEEET
T ss_pred CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceee--------------ecccccCc---cEEEEECCCCC-EEEEEeC
Confidence 335666889999999999999999999998744433 12345555 99999999986 8888888
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc---
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST--- 253 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--- 253 (489)
| ++|++||+.... . .. .+.+|...|.+++|+|++. +|++++.|+.|++||+++++ ++..+.
T Consensus 160 d-~~i~iwd~~~~~-----~---~~----~~~~h~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~--~~~~~~~~~ 223 (420)
T 3vl1_A 160 D-MQLKIWSVKDGS-----N---PR----TLIGHRATVTDIAIIDRGR-NVLSASLDGTIRLWECGTGT--TIHTFNRKE 223 (420)
T ss_dssp T-SEEEEEETTTCC-----C---CE----EEECCSSCEEEEEEETTTT-EEEEEETTSCEEEEETTTTE--EEEEECBTT
T ss_pred C-CeEEEEeCCCCc-----C---ce----EEcCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEeECCCCc--eeEEeecCC
Confidence 8 999999995331 1 12 2367999999999999999 99999999999999999876 443443
Q ss_pred CCCCceeE---------------------EEEeecCCEEEEEeCCCeEEEEEcCCCcccceee-cCCccCCCCeeEEEeC
Q 037120 254 GSHGTLNS---------------------IQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH-NHKEVCHLPLTSLKLA 311 (489)
Q Consensus 254 ~h~~~v~~---------------------~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~-~~~~~~~~~v~~l~~~ 311 (489)
.|...|.+ ++|+|+++++++++.||.|++||+++++.+..+. .|... |++++|+
T Consensus 224 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----v~~~~~~ 299 (420)
T 3vl1_A 224 NPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCS----CNSLTVD 299 (420)
T ss_dssp BTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSC----EEEEEEC
T ss_pred CCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCC----ceeEEEe
Confidence 33444444 5557889999999999999999999988765554 35545 8888877
Q ss_pred CCCc-ceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccce-eeecCCCCCCcCCCCccccccCCCcc
Q 037120 312 SMLE-KIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRV-SHVHCPPPAWLSDSNNSADQLHLRKP 389 (489)
Q Consensus 312 ~~~~-~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (489)
|++. ++++. +. ++-..++++..+.. ... +.... ...+. .
T Consensus 300 ~~~~~~l~~g--------------------------~~-dg~i~vwd~~~~~~~~~~------~~~~~-----~~~v~-~ 340 (420)
T 3vl1_A 300 GNNANYIYAG--------------------------YE-NGMLAQWDLRSPECPVGE------FLINE-----GTPIN-N 340 (420)
T ss_dssp SSCTTEEEEE--------------------------ET-TSEEEEEETTCTTSCSEE------EEEST-----TSCEE-E
T ss_pred CCCCCEEEEE--------------------------eC-CCeEEEEEcCCCcCchhh------hhccC-----CCCce-E
Confidence 7765 44331 11 11112222222111 000 00000 00011 1
Q ss_pred eeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCC---eEEec
Q 037120 390 SWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN---TIVAG 466 (489)
Q Consensus 390 ~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~---~i~sg 466 (489)
.+.++ +.++++|+.|+.|++||+... +....+. .......+.+|.+.|.+++|+|++. .+++.
T Consensus 341 ~~~~~-~~~l~s~~~d~~v~iw~~~~~----------~~~~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~ 406 (420)
T 3vl1_A 341 VYFAA-GALFVSSGFDTSIKLDIISDP----------ESERPAI---EFETPTFLVSNDDAVSQFCYVSDDESNGEVLEV 406 (420)
T ss_dssp EEEET-TEEEEEETTTEEEEEEEECCT----------TCCSCEE---CTTSCEEECCSSCCCCEEEEECCSSSSCEEEEE
T ss_pred EEeCC-CCEEEEecCCccEEEEeccCC----------CCCccce---eccCccEEccCCcceEEEEEccCCCCcceEEEE
Confidence 23333 568899999999999999875 1111100 0000111247999999999999999 78888
Q ss_pred cCcceeEEEeccc
Q 037120 467 TKNSSLLVVSQKQ 479 (489)
Q Consensus 467 s~dg~i~v~~~~~ 479 (489)
|.+|.+.+|..+.
T Consensus 407 g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 407 GKNNFCALYNLSN 419 (420)
T ss_dssp ETTTEEEEEESCC
T ss_pred cCCceEEEEeccC
Confidence 8889999998764
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.6e-30 Score=286.51 Aligned_cols=316 Identities=14% Similarity=0.157 Sum_probs=239.2
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCC-CCE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLAN-QDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~-~~~ 170 (489)
+..+...|.+++|+|+|++||+|+.||.|+|||+.+..... .+.+|... |.+++|+|++ ..+
T Consensus 653 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~--------------~~~~~~~~---v~~~~~~~~~~~~~ 715 (1249)
T 3sfz_A 653 IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVH--------------TYDEHSEQ---VNCCHFTNKSNHLL 715 (1249)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE--------------EEECCSSC---EEEEEECSSSSCCE
T ss_pred eccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEE--------------EEcCCCCc---EEEEEEecCCCceE
Confidence 45577789999999999999999999999999999854443 12345555 9999999963 347
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-c-
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-S- 248 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~- 248 (489)
+++++.| +.|++||+..+. ....+.+|...|++++|+|++. .|++++.||.|++||+++++.. .
T Consensus 716 l~sg~~d-~~v~vwd~~~~~------------~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~v~vwd~~~~~~~~~~ 781 (1249)
T 3sfz_A 716 LATGSND-FFLKLWDLNQKE------------CRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTLRLWDVRSANERKSI 781 (1249)
T ss_dssp EEEEETT-SCEEEEETTSSS------------EEEEECCCSSCEEEEEECSSTT-EEEEEESSSEEEEEEGGGTEEEEEE
T ss_pred EEEEeCC-CeEEEEECCCcc------------hhheecCCCCCEEEEEEecCCC-EEEEEECCCeEEEEeCCCCccccee
Confidence 7788887 999999994321 1222378999999999999999 9999999999999998765311 0
Q ss_pred ---------------------------------------------------eeeccCCCCceeEEEEeecCCEEEEEeCC
Q 037120 249 ---------------------------------------------------LELSTGSHGTLNSIQLHAENQIIFAAGKH 277 (489)
Q Consensus 249 ---------------------------------------------------~~~~~~h~~~v~~~~~~p~~~~l~~~~~d 277 (489)
.....+|...|.+++|+|+++++++++.|
T Consensus 782 ~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d 861 (1249)
T 3sfz_A 782 NVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQ 861 (1249)
T ss_dssp ECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSS
T ss_pred cccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCC
Confidence 00112678899999999999999999999
Q ss_pred CeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccce--------------------------------
Q 037120 278 GSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSK-------------------------------- 325 (489)
Q Consensus 278 g~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~-------------------------------- 325 (489)
|.|++||+.++..+..+.+|... |++++|+|++..+.+......
T Consensus 862 g~v~vwd~~~~~~~~~~~~h~~~----v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 937 (1249)
T 3sfz_A 862 YCVELWNIDSRLKVADCRGHLSW----VHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMV 937 (1249)
T ss_dssp SCEEEEETTTTEEEEEECCCSSC----EEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEE
T ss_pred CeEEEEEcCCCceeeecCCCccc----eEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEE
Confidence 99999999999999999999877 999999999987744221110
Q ss_pred ---------------------eeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCcccccc
Q 037120 326 ---------------------IVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQL 384 (489)
Q Consensus 326 ---------------------~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (489)
.....+..++++|++.+++++..++. ..+++...+........ ...
T Consensus 938 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~-i~i~d~~~~~~~~~~~~------------h~~ 1004 (1249)
T 3sfz_A 938 LAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGA-IKIIELPNNRVFSSGVG------------HKK 1004 (1249)
T ss_dssp EEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSC-CEEEETTTTSCEEECCC------------CSS
T ss_pred EEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCC-EEEEEcCCCceeeeccc------------CCC
Confidence 11346888999999998888776654 23444444332221110 012
Q ss_pred CCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEE
Q 037120 385 HLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIV 464 (489)
Q Consensus 385 ~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~ 464 (489)
.+..++|+|++ .++++|+.|+.|++||+.++ +.. .+. +|...|.+++|+|++ .++
T Consensus 1005 ~v~~l~~s~dg-~~l~s~~~dg~i~vwd~~~~----------~~~-~~~------------~~~~~v~~~~~~~~~-~l~ 1059 (1249)
T 3sfz_A 1005 AVRHIQFTADG-KTLISSSEDSVIQVWNWQTG----------DYV-FLQ------------AHQETVKDFRLLQDS-RLL 1059 (1249)
T ss_dssp CCCCEEECSSS-SCEEEECSSSBEEEEETTTT----------EEE-CCB------------CCSSCEEEEEECSSS-EEE
T ss_pred ceEEEEECCCC-CEEEEEcCCCEEEEEECCCC----------ceE-EEe------------cCCCcEEEEEEcCCC-cEE
Confidence 23456777764 56778899999999999987 444 233 799999999999955 578
Q ss_pred eccCcceeEEEecccc
Q 037120 465 AGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 465 sgs~dg~i~v~~~~~~ 480 (489)
+++.||.|.+|.....
T Consensus 1060 ~~~~dg~v~vwd~~~~ 1075 (1249)
T 3sfz_A 1060 SWSFDGTVKVWNVITG 1075 (1249)
T ss_dssp EEESSSEEEEEETTTT
T ss_pred EEECCCcEEEEECCCC
Confidence 9999999999986543
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=9.7e-31 Score=279.15 Aligned_cols=168 Identities=11% Similarity=0.107 Sum_probs=131.7
Q ss_pred CCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
+...|.+++|+| |++||+++.|++|+|||+.+.+... .+ .|... |++++|+|++. .+++|
T Consensus 57 ~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~--------~~-------~~~~~---V~~v~~sp~g~-~l~sg 116 (902)
T 2oaj_A 57 DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLT--------TV-------FVPGK---ITSIDTDASLD-WMLIG 116 (902)
T ss_dssp SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEE--------EE-------ECSSC---EEEEECCTTCS-EEEEE
T ss_pred CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEE--------EE-------cCCCC---EEEEEECCCCC-EEEEE
Confidence 456799999999 8899999999999999998854433 11 13333 99999999986 78888
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeecee--ee---eecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRS--VT---VVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~--~~---~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
+.| |+|++||+.... .. .... .. ..+.+|...|++++|+|++...|++|+.||.| +||+++++ ++
T Consensus 117 s~d-g~V~lwd~~~~~-----~~-~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~--~~ 186 (902)
T 2oaj_A 117 LQN-GSMIVYDIDRDQ-----LS-SFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENE--IK 186 (902)
T ss_dssp ETT-SCEEEEETTTTE-----EE-EEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTE--EE
T ss_pred cCC-CcEEEEECCCCc-----cc-cceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCc--eE
Confidence 888 999999995331 11 0000 00 22478999999999999765489999999999 99999865 44
Q ss_pred eeccC------------------CCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccc
Q 037120 250 ELSTG------------------SHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSA 292 (489)
Q Consensus 250 ~~~~~------------------h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~ 292 (489)
+.+.. |...|++++|+|+|.+|++++.||+|++||+++++++.
T Consensus 187 ~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 187 QSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp EEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred EEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 44433 35789999999999999999999999999999988754
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.98 E-value=3.6e-30 Score=251.29 Aligned_cols=300 Identities=13% Similarity=0.093 Sum_probs=207.3
Q ss_pred eeEEEECCCCcEE-EEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 99 ISALDFDCKGIYL-VSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 99 V~~~~fs~~g~~l-a~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
...++++|+...+ ++|+.||.|+||++....... .....+.+|... |++++|+|.+..+|++++.|
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~----------~~~~~~~~h~~~---V~~~~~~p~~~~~l~s~s~d 103 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVD----------KNVPLVCGHTAP---VLDIAWCPHNDNVIASGSED 103 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECC----------TTCCCBCCCSSC---EEEEEECTTCTTEEEEEETT
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCC----------CCCceEecCCCC---EEEEEeCCCCCCEEEEEeCC
Confidence 5568899987554 457889999999997632211 111223456666 99999999444589999988
Q ss_pred CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeec--cCC
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELS--TGS 255 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~h 255 (489)
|+|++||+....... ........+.+|...|++++|+|++.++|++++.|+.|++||+++++ ++..+ ..|
T Consensus 104 -g~v~vw~~~~~~~~~-----~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~ 175 (402)
T 2aq5_A 104 -CTVMVWEIPDGGLVL-----PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGA--AVLTLGPDVH 175 (402)
T ss_dssp -SEEEEEECCTTCCSS-----CBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTE--EEEEECTTTC
T ss_pred -CeEEEEEccCCCCcc-----ccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCC--ccEEEecCCC
Confidence 999999995442110 01111223478999999999999985599999999999999999876 55555 689
Q ss_pred CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCccccee-ecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEE
Q 037120 256 HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPF-HNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSI 334 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~-~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~ 334 (489)
...|.+++|+|+++++++++.||.|++||+++++.+..+ ..|... .+.++.|+|++..+...
T Consensus 176 ~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~g-------------- 238 (402)
T 2aq5_A 176 PDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGT---RPVHAVFVSEGKILTTG-------------- 238 (402)
T ss_dssp CSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSS---SCCEEEECSTTEEEEEE--------------
T ss_pred CCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCC---cceEEEEcCCCcEEEEe--------------
Confidence 999999999999999999999999999999999888777 565432 26777777776655431
Q ss_pred EeCCCCCeEEEEEecCCceEEEEeeccce-eeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEec
Q 037120 335 DLDPSCSYQLAFHLDDGWSGVLDVYNSRV-SHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDF 413 (489)
Q Consensus 335 ~~~p~~~~~~~~~~~~~w~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~ 413 (489)
++. ..++-..+++...+.. ...... ... ..+..++|.|++..++++|+.|+.|++||+
T Consensus 239 -~~~---------~~d~~i~iwd~~~~~~~~~~~~~----~~~-------~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~ 297 (402)
T 2aq5_A 239 -FSR---------MSERQVALWDTKHLEEPLSLQEL----DTS-------SGVLLPFFDPDTNIVYLCGKGDSSIRYFEI 297 (402)
T ss_dssp -ECT---------TCCEEEEEEETTBCSSCSEEEEC----CCC-------SSCEEEEEETTTTEEEEEETTCSCEEEEEE
T ss_pred -ccC---------CCCceEEEEcCccccCCceEEec----cCC-------CceeEEEEcCCCCEEEEEEcCCCeEEEEEe
Confidence 000 0011112233222211 000000 000 123456888888888889999999999999
Q ss_pred cCCCCCCeeeccCcc-cchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 414 FPGSSSPSHVDYNED-IESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 414 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
.++ +. +..+.. ..|.+.|.+++|+|++..++++ ++.+++|.-..
T Consensus 298 ~~~----------~~~~~~l~~----------~~~~~~v~~~~~sp~~~~~~s~--~~~~~~~~l~~ 342 (402)
T 2aq5_A 298 TSE----------APFLHYLSM----------FSSKESQRGMGYMPKRGLEVNK--CEIARFYKLHE 342 (402)
T ss_dssp CSS----------TTCEEEEEE----------ECCSSCCSEEEECCGGGSCGGG--TEEEEEEEEET
T ss_pred cCC----------CcceEeecc----------cccCCcccceEEecccccceec--ceeEEEEEcCC
Confidence 887 42 333330 0356899999999999988764 55778876544
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=272.70 Aligned_cols=260 Identities=10% Similarity=0.086 Sum_probs=196.8
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCC-CCE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLAN-QDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~-~~~ 170 (489)
+..|...|++++|+|+|++|++|+.||.|+|||+.... ......+.+|... |++++|+|+. ...
T Consensus 5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~------------~~~~~~l~~h~~~---V~~l~~s~~~~~~~ 69 (753)
T 3jro_A 5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET------------HKLIDTLTGHEGP---VWRVDWAHPKFGTI 69 (753)
T ss_dssp ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE------------EEEEEEECCCSSC---EEEEEECCTTSCSE
T ss_pred cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC------------CccceeccCCcCc---eEEEEecCCCCCCE
Confidence 45677889999999999999999999999999987421 1111223456666 9999999872 348
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecC--CCcEEEEEeCCCcEEEEECCCCCcCc
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAV--NTSRLIASDTHGVVNIWDRRVGVLPS 248 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~ 248 (489)
+++++.| |+|++||+..+. .. ....+.+|...|++++|+|+ +. .+++|+.||.|++||++++....
T Consensus 70 l~s~s~D-g~I~vwd~~~~~------~~----~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~ 137 (753)
T 3jro_A 70 LASCSYD-GKVLIWKEENGR------WS----QIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTS 137 (753)
T ss_dssp EEEEETT-SCEEEEEEETTE------EE----EEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCC
T ss_pred EEEEeCC-CeEEEEECCCCc------cc----ccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcc
Confidence 8888888 999999994321 11 12223779999999999999 77 99999999999999999875443
Q ss_pred eeeccCCCCceeEEEEee-------------cCCEEEEEeCCCeEEEEEcCCCcc----cceeecCCccCCCCeeEEEeC
Q 037120 249 LELSTGSHGTLNSIQLHA-------------ENQIIFAAGKHGSIYLWDLRGGRT----SAPFHNHKEVCHLPLTSLKLA 311 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p-------------~~~~l~~~~~dg~i~lwd~~~~~~----~~~~~~~~~~~~~~v~~l~~~ 311 (489)
.....+|...|.+++|+| ++.++++|+.||.|++||++++.. +..+.+|... |++++|+
T Consensus 138 ~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~----V~~l~~s 213 (753)
T 3jro_A 138 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW----VRDVAWS 213 (753)
T ss_dssp CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC----EEEEEEC
T ss_pred eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc----EEEEEec
Confidence 445568999999999999 589999999999999999998642 3444555544 5555544
Q ss_pred CCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCccee
Q 037120 312 SMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSW 391 (489)
Q Consensus 312 ~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (489)
|++ . .
T Consensus 214 p~~--------------------------~----------------------------------~--------------- 218 (753)
T 3jro_A 214 PTV--------------------------L----------------------------------L--------------- 218 (753)
T ss_dssp CCC--------------------------S----------------------------------S---------------
T ss_pred cCC--------------------------C----------------------------------C---------------
Confidence 431 0 0
Q ss_pred ecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcce
Q 037120 392 LSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSS 471 (489)
Q Consensus 392 ~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~ 471 (489)
+.++++|+.|+.|++||+.++.... ........ +|.+.|++++|+|++.+|++|+.||.
T Consensus 219 ----~~~l~s~s~Dg~I~iwd~~~~~~~~-----~~~~~~~~------------~~~~~v~~l~~spdg~~l~s~s~Dg~ 277 (753)
T 3jro_A 219 ----RSYLASVSQDRTCIIWTQDNEQGPW-----KKTLLKEE------------KFPDVLWRASWSLSGNVLALSGGDNK 277 (753)
T ss_dssp ----SEEEEEEESSSCEEEEEESSSSSCC-----BCCBSSSS------------CCSSCCCCEEECTTTCCEEEECSSSC
T ss_pred ----CCEEEEEecCCEEEEecCCCCCCcc-----eeEEeccC------------CCCCceEEEEEcCCCCEEEEEcCCCE
Confidence 5578888999999999998761000 00122222 68999999999999999999999999
Q ss_pred eEEEecc
Q 037120 472 LLVVSQK 478 (489)
Q Consensus 472 i~v~~~~ 478 (489)
|.||...
T Consensus 278 I~vwd~~ 284 (753)
T 3jro_A 278 VTLWKEN 284 (753)
T ss_dssp EECCBCC
T ss_pred EEEEecC
Confidence 9999866
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=252.26 Aligned_cols=273 Identities=12% Similarity=0.118 Sum_probs=185.3
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..+...|.+++|+|+|++||+|+.|+.|+|||+........ .......+.+|... |.+++|+|++...|
T Consensus 104 ~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~-------~~~~~~~~~gh~~~---v~~~~~~~~~~~~l 173 (380)
T 3iz6_a 104 IKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDG-------NMPVSRVLTGHKGY---ASSCQYVPDQETRL 173 (380)
T ss_dssp EECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCC-------SSTTCCBCCCCSSC---CCCCBCCSSSSSCE
T ss_pred EecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccC-------CccceeeccCCCcc---eEEEEEecCCCCEE
Confidence 455667799999999999999999999999999976322111 11222234567776 77899999877789
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++.| ++|++||+..+. .+.... .....+|...|.+++|++.+.++|++|+.|++|++||++.... ++..
T Consensus 174 ~s~s~D-~~i~~wd~~~~~-----~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~-~~~~ 244 (380)
T 3iz6_a 174 ITGSGD-QTCVLWDVTTGQ-----RISIFG--SEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR-AVRT 244 (380)
T ss_dssp EEECTT-SCEEEECTTTCC-----EEEEEC--CCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC-CCEE
T ss_pred EEECCC-CcEEEEEcCCCc-----EEEEee--cccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc-ceEE
Confidence 999988 999999995431 111110 0012679999999999884444999999999999999985432 4556
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
+.+|...|++++|+|+++++++|+.||+|++||+++++.+..+..+.... ......|
T Consensus 245 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~-----------------------~~~~~~v 301 (380)
T 3iz6_a 245 YHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRN-----------------------DNELPIV 301 (380)
T ss_dssp ECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSS-----------------------CCSSCSC
T ss_pred ECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccc-----------------------ccccCce
Confidence 77999999999999999999999999999999999988776665433210 0011124
Q ss_pred eEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEE
Q 037120 332 HSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLL 411 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vw 411 (489)
.+++|+|++.+++++..++. ..+++...+........ ... .....+..++|+|+ +.++++|+.|+.|+||
T Consensus 302 ~~~~~s~~g~~l~~g~~dg~-i~vwd~~~~~~~~~~~~--~~~------~h~~~v~~l~~s~d-g~~l~sgs~D~~i~iW 371 (380)
T 3iz6_a 302 TSVAFSISGRLLFAGYSNGD-CYVWDTLLAEMVLNLGT--LQN------SHEGRISCLGLSSD-GSALCTGSWDKNLKIW 371 (380)
T ss_dssp SEEEECSSSSEEEEECTTSC-EEEEETTTCCEEEEECC--SCS------SCCCCCCEEEECSS-SSEEEEECTTSCEEEE
T ss_pred EEEEECCCCCEEEEEECCCC-EEEEECCCCceEEEEec--ccC------CCCCceEEEEECCC-CCEEEEeeCCCCEEEE
Confidence 45555565555555444332 22333332222111000 000 00012334566666 4578899999999999
Q ss_pred eccCC
Q 037120 412 DFFPG 416 (489)
Q Consensus 412 d~~~~ 416 (489)
++...
T Consensus 372 ~~~~~ 376 (380)
T 3iz6_a 372 AFSGH 376 (380)
T ss_dssp ECCSS
T ss_pred ecCCC
Confidence 99765
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-29 Score=248.45 Aligned_cols=309 Identities=14% Similarity=0.135 Sum_probs=221.8
Q ss_pred cccCCCc-eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPG-ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~-V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..|... +.|+.+ +|++|++|+.||.|+|||+.+.+... .+.+|... |.+++|++ .+
T Consensus 114 l~~h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~~~~--------------~~~~h~~~---v~~~~~~~---~~ 171 (445)
T 2ovr_B 114 LKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLR--------------TLVGHTGG---VWSSQMRD---NI 171 (445)
T ss_dssp EECSTTSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEE--------------ECCCCSSC---EEEEEEET---TE
T ss_pred ecccCCCcEEEEEE--cCCEEEEEECCCcEEEEECCCCcEEE--------------EEcCCCCC---EEEEEecC---CE
Confidence 3445555 566554 68999999999999999998854443 12456655 99999984 38
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
+++++.| |+|++||+..+ .. ...+.+|...|.+++|+ +. .+++++.||.|++||+++++ ++.
T Consensus 172 l~s~~~d-g~i~vwd~~~~-----~~-------~~~~~~h~~~v~~~~~~--~~-~l~s~s~dg~i~~wd~~~~~--~~~ 233 (445)
T 2ovr_B 172 IISGSTD-RTLKVWNAETG-----EC-------IHTLYGHTSTVRCMHLH--EK-RVVSGSRDATLRVWDIETGQ--CLH 233 (445)
T ss_dssp EEEEETT-SCEEEEETTTT-----EE-------EEEECCCSSCEEEEEEE--TT-EEEEEETTSEEEEEESSSCC--EEE
T ss_pred EEEEeCC-CeEEEEECCcC-----cE-------EEEECCCCCcEEEEEec--CC-EEEEEeCCCEEEEEECCCCc--EEE
Confidence 8888888 99999999432 11 22237899999999995 45 89999999999999999877 666
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccc--------
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKA-------- 322 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~-------- 322 (489)
.+.+|...|.+++| ++.++++++.||.|++||+++++.+..+.+|... |.++.| ++..+.+...
T Consensus 234 ~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----v~~~~~--~~~~l~~~~~d~~i~i~d 305 (445)
T 2ovr_B 234 VLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR----VYSLQF--DGIHVVSGSLDTSIRVWD 305 (445)
T ss_dssp EEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSC----EEEEEE--CSSEEEEEETTSCEEEEE
T ss_pred EEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCc----eEEEEE--CCCEEEEEeCCCeEEEEE
Confidence 77799999999999 7889999999999999999999999999988877 999999 5555532111
Q ss_pred --------cceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecC
Q 037120 323 --------QSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLST 394 (489)
Q Consensus 323 --------~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (489)
....+...+..+.+ ++.++++++.++. ..+++...+............ . ..+..+.|
T Consensus 306 ~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~--~-------~~v~~~~~--- 370 (445)
T 2ovr_B 306 VETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADST-VKIWDIKTGQCLQTLQGPNKH--Q-------SAVTCLQF--- 370 (445)
T ss_dssp TTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSC-EEEEETTTCCEEEEECSTTSC--S-------SCEEEEEE---
T ss_pred CCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCe-EEEEECCCCcEEEEEccCCCC--C-------CCEEEEEE---
Confidence 11123445556655 4556666655543 345555444333222110000 0 11122233
Q ss_pred CcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcce---
Q 037120 395 NSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSS--- 471 (489)
Q Consensus 395 ~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~--- 471 (489)
.+.++++|+.||.|++||+.++ +.+..+... ...+|.+.|++++|+|++..+|+|+.||+
T Consensus 371 ~~~~l~s~~~dg~v~iwd~~~~----------~~~~~~~~~-------~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~ 433 (445)
T 2ovr_B 371 NKNFVITSSDDGTVKLWDLKTG----------EFIRNLVTL-------ESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 433 (445)
T ss_dssp CSSEEEEEETTSEEEEEETTTC----------CEEEEEEEC-------TTGGGTCEEEEEEECSSEEEEEEECSSSSSCC
T ss_pred CCCEEEEEeCCCeEEEEECCCC----------ceeeeeecc-------ccCCCCceEEEEEecCCEEEEEEcccCCCCcc
Confidence 2568999999999999999988 666554100 00168899999999999999999999998
Q ss_pred -eEEEecccc
Q 037120 472 -LLVVSQKQQ 480 (489)
Q Consensus 472 -i~v~~~~~~ 480 (489)
|.||..+.+
T Consensus 434 ~l~v~df~~~ 443 (445)
T 2ovr_B 434 KLLVLDFDVD 443 (445)
T ss_dssp EEEEEECCCC
T ss_pred EEEEEECCCC
Confidence 999887654
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.9e-29 Score=257.41 Aligned_cols=328 Identities=14% Similarity=0.120 Sum_probs=228.1
Q ss_pred cccCCCceeEEEECCCCcEEEEEecC----CeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCC
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRS----GCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLAN 167 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~d----g~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~ 167 (489)
+..+...|.+++|+|+|++|++++.+ +.|.+||... ... .+.+|... |.+++|+|++
T Consensus 112 ~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~~~--~~~--------------~~~~~~~~---v~~~~~~~~~ 172 (615)
T 1pgu_A 112 FQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGN--SLG--------------EVSGHSQR---INACHLKQSR 172 (615)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCC--EEE--------------ECCSCSSC---EEEEEECSSS
T ss_pred hhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEECCC--cce--------------eeecCCcc---EEEEEECCCC
Confidence 44566779999999999999999988 7888888432 111 12345555 9999999998
Q ss_pred CCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCccc---CeeEEEEecC-CCcEEEEEeCCCcEEEEECCC
Q 037120 168 QDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQK---GLSDLAFSAV-NTSRLIASDTHGVVNIWDRRV 243 (489)
Q Consensus 168 ~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~-~~~~l~s~s~dg~i~iwd~~~ 243 (489)
..++++++.| +.|++||+... .. ...+.+|.. .|++++|+|+ +. +|++++.|+.|++||+++
T Consensus 173 ~~~l~~~~~d-~~v~vwd~~~~-----~~-------~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~ 238 (615)
T 1pgu_A 173 PMRSMTVGDD-GSVVFYQGPPF-----KF-------SASDRTHHKQGSFVRDVEFSPDSGE-FVITVGSDRKISCFDGKS 238 (615)
T ss_dssp SCEEEEEETT-TEEEEEETTTB-----EE-------EEEECSSSCTTCCEEEEEECSTTCC-EEEEEETTCCEEEEETTT
T ss_pred CcEEEEEeCC-CcEEEEeCCCc-----ce-------eeeecccCCCCceEEEEEECCCCCC-EEEEEeCCCeEEEEECCC
Confidence 7789999988 99999998321 11 222377888 9999999999 88 999999999999999998
Q ss_pred CCcCceeec-c---CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceee
Q 037120 244 GVLPSLELS-T---GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 244 ~~~~~~~~~-~---~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
++ .+..+ . .|...|.+++|+ ++.++++++.||.|++||+++++.+..+..+.......+.++.|. ++..+..
T Consensus 239 ~~--~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ 314 (615)
T 1pgu_A 239 GE--FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIIS 314 (615)
T ss_dssp CC--EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEE
T ss_pred CC--EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEE
Confidence 76 55555 5 899999999999 999999999999999999999998888876632111337888885 5554422
Q ss_pred cc----------------cccee---------------------------------eccceeEEEeCCCCCeEEEEEecC
Q 037120 320 LK----------------AQSKI---------------------------------VSQEIHSIDLDPSCSYQLAFHLDD 350 (489)
Q Consensus 320 ~~----------------~~~~~---------------------------------~~~~i~~~~~~p~~~~~~~~~~~~ 350 (489)
.. ..... +...|.++.+ +++..+++++.++
T Consensus 315 ~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~ 393 (615)
T 1pgu_A 315 LSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDD 393 (615)
T ss_dssp EETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTT
T ss_pred EECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCC
Confidence 11 01111 2234455555 3355566555554
Q ss_pred C---ceEE------------------------------EEeeccceeeecC-------C-------------C---CCCc
Q 037120 351 G---WSGV------------------------------LDVYNSRVSHVHC-------P-------------P---PAWL 374 (489)
Q Consensus 351 ~---w~~~------------------------------~~~~~~~~~~~~~-------~-------------~---~~~~ 374 (489)
. |... ++...+....... . . ..|.
T Consensus 394 ~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~ 473 (615)
T 1pgu_A 394 TLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFK 473 (615)
T ss_dssp EEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEE
T ss_pred CEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEE
Confidence 3 3200 0000000000000 0 0 0000
Q ss_pred CCC------CccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCccc-C
Q 037120 375 SDS------NNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVP-L 447 (489)
Q Consensus 375 ~~~------~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h 447 (489)
... ........+..++|+|++ .++++|+.|+.|++||+.++ +.+..+. + |
T Consensus 474 ~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~i~iw~~~~~----------~~~~~~~------------~~h 530 (615)
T 1pgu_A 474 LSDLEVSFDLKTPLRAKPSYISISPSE-TYIAAGDVMGKILLYDLQSR----------EVKTSRW------------AFR 530 (615)
T ss_dssp TTEEEEEEECSSCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTT----------EEEECCS------------CCC
T ss_pred CCCccccccccCCccCceEEEEECCCC-CEEEEcCCCCeEEEeeCCCC----------cceeEee------------cCC
Confidence 000 000111233457788875 57788899999999999988 6766665 6 9
Q ss_pred CCceEEEEeeC----------CCCeEEeccCcceeEEEecccc
Q 037120 448 SEGVTACVTHP----------LNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 448 ~~~V~~va~~p----------~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
...|++++|+| ++.+||+|+.||.|.||..+..
T Consensus 531 ~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~ 573 (615)
T 1pgu_A 531 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRP 573 (615)
T ss_dssp SSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCT
T ss_pred CCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCC
Confidence 99999999999 9999999999999999987663
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-30 Score=272.68 Aligned_cols=286 Identities=10% Similarity=0.106 Sum_probs=209.1
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|...|.+++|+|+|++||+|+.||.|+|||+.+..... .+.+|... |.+++|+|++. .|
T Consensus 9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~--------------~~~~~~~~---v~~~~~s~~~~-~l 70 (814)
T 3mkq_A 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR--------------SIQVTETP---VRAGKFIARKN-WI 70 (814)
T ss_dssp EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE--------------EEECCSSC---EEEEEEEGGGT-EE
T ss_pred eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE--------------EEecCCCc---EEEEEEeCCCC-EE
Confidence 55677789999999999999999999999999998854433 12345555 99999999986 77
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++.| |.|++||+..+ . ....+.+|...|++++|+|+++ .|++++.||.|++||++++.. ....
T Consensus 71 ~~~~~d-g~i~vw~~~~~-----~-------~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~-~~~~ 135 (814)
T 3mkq_A 71 IVGSDD-FRIRVFNYNTG-----E-------KVVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWA-LEQT 135 (814)
T ss_dssp EEEETT-SEEEEEETTTC-----C-------EEEEEECCSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTSE-EEEE
T ss_pred EEEeCC-CeEEEEECCCC-----c-------EEEEEecCCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCCce-EEEE
Confidence 888877 99999999432 1 1122367999999999999999 999999999999999987632 4556
Q ss_pred ccCCCCceeEEEEee-cCCEEEEEeCCCeEEEEEcCCCcccceeecCC-ccCCCCeeEEEeCC--CCcceeeccccceee
Q 037120 252 STGSHGTLNSIQLHA-ENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHK-EVCHLPLTSLKLAS--MLEKIGTLKAQSKIV 327 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p-~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~--~~~~i~~~~~~~~~~ 327 (489)
+.+|...|.+++|+| ++..+++++.||.|++||+++++....+..+. .. +..++|+| ++..+......
T Consensus 136 ~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~l~~~~~d---- 207 (814)
T 3mkq_A 136 FEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERG----VNYVDYYPLPDKPYMITASDD---- 207 (814)
T ss_dssp EECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTC----CCEEEECCSTTCCEEEEECTT----
T ss_pred EcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCC----EEEEEEEECCCCCEEEEEeCC----
Confidence 678999999999999 88999999999999999999887766666543 44 78888877 55555431111
Q ss_pred ccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCc
Q 037120 328 SQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHG 407 (489)
Q Consensus 328 ~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~ 407 (489)
..+..+..... .......++... +..++|+|++. ++++|+.|+.
T Consensus 208 -------------g~i~~~d~~~~--~~~~~~~~~~~~--------------------v~~~~~~~~~~-~l~~~~~dg~ 251 (814)
T 3mkq_A 208 -------------LTIKIWDYQTK--SCVATLEGHMSN--------------------VSFAVFHPTLP-IIISGSEDGT 251 (814)
T ss_dssp -------------SEEEEEETTTT--EEEEEEECCSSC--------------------EEEEEECSSSS-EEEEEETTSC
T ss_pred -------------CEEEEEECCCC--cEEEEEcCCCCC--------------------EEEEEEcCCCC-EEEEEeCCCe
Confidence 01111111100 111122222111 22345666544 7788899999
Q ss_pred EEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCC--eEEeccCcceeEEEec
Q 037120 408 IHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN--TIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 408 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~--~i~sgs~dg~i~v~~~ 477 (489)
|++||+.++ +.+..+. .|...|.+++|+|++. .+++++ ++.+.+|..
T Consensus 252 v~vwd~~~~----------~~~~~~~------------~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 300 (814)
T 3mkq_A 252 LKIWNSSTY----------KVEKTLN------------VGLERSWCIATHPTGRKNYIASGF-DNGFTVLSL 300 (814)
T ss_dssp EEEEETTTC----------SEEEEEC------------CSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEEC
T ss_pred EEEEECCCC----------cEEEEee------------cCCCcEEEEEEccCCCceEEEEEe-CCCEEEEEc
Confidence 999999988 7777776 8889999999999987 355555 455555543
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=242.18 Aligned_cols=194 Identities=12% Similarity=0.165 Sum_probs=149.2
Q ss_pred cCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 94 FGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
.+...|.+++|+|+|.+||+|+.|+.+++|++....... .......+.+|... |.+++|+|++. .|++
T Consensus 104 ~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~--------~~~~~~~~~~h~~~---v~~~~~~~~~~-~l~t 171 (354)
T 2pbi_B 104 MPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNEN--------MAAKKKSVAMHTNY---LSACSFTNSDM-QILT 171 (354)
T ss_dssp CSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCC--------SGGGCEEEEECSSC---EEEEEECSSSS-EEEE
T ss_pred cCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEecccccc--------ccccceeeeccCCc---EEEEEEeCCCC-EEEE
Confidence 344569999999999999999999999999987532111 11222233457776 99999999975 7778
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecC--CCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAV--NTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++.| ++|++||+... . ....+.+|...|.+++|+|+ +. +|++|+.||.|++||+++++ ++..
T Consensus 172 ~s~D-~~v~lwd~~~~-----~-------~~~~~~~h~~~v~~~~~~~~~~g~-~l~sgs~Dg~v~~wd~~~~~--~~~~ 235 (354)
T 2pbi_B 172 ASGD-GTCALWDVESG-----Q-------LLQSFHGHGADVLCLDLAPSETGN-TFVSGGCDKKAMVWDMRSGQ--CVQA 235 (354)
T ss_dssp EETT-SEEEEEETTTC-----C-------EEEEEECCSSCEEEEEECCCSSCC-EEEEEETTSCEEEEETTTCC--EEEE
T ss_pred EeCC-CcEEEEeCCCC-----e-------EEEEEcCCCCCeEEEEEEeCCCCC-EEEEEeCCCeEEEEECCCCc--EEEE
Confidence 8888 99999999432 1 12233789999999999885 45 99999999999999999987 7777
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
+.+|...|++++|+|++.++++++.|++|++||+++++.+..+..+... ..+++++|+|++..+
T Consensus 236 ~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~--~~~~~~~~s~~g~~l 299 (354)
T 2pbi_B 236 FETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESII--FGASSVDFSLSGRLL 299 (354)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC--SCEEEEEECTTSSEE
T ss_pred ecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcc--cceeEEEEeCCCCEE
Confidence 8899999999999999999999999999999999987765555432211 125555555555444
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-29 Score=236.44 Aligned_cols=273 Identities=13% Similarity=0.135 Sum_probs=201.9
Q ss_pred cCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 94 FGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
.|...|.+++|+|++++|++++ ||.|+|||+.+...... ........|... |.+++|+|++. .+++
T Consensus 49 ~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~---------~~~~~~~~~~~~---v~~~~~~~~~~-~l~~ 114 (337)
T 1gxr_A 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP---------VSQLDCLNRDNY---IRSCKLLPDGC-TLIV 114 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC---------SEEEECSCTTSB---EEEEEECTTSS-EEEE
T ss_pred cCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceee---------eecccccCCCCc---EEEEEEcCCCC-EEEE
Confidence 4667799999999999999999 99999999987432221 111111134444 99999999985 7777
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST 253 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 253 (489)
++.| |.|++||+..... . ....+.+|...|.+++|+|+++ +|++++.||.|++||+++++ ....+.
T Consensus 115 ~~~d-~~i~~~d~~~~~~------~----~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~--~~~~~~ 180 (337)
T 1gxr_A 115 GGEA-STLSIWDLAAPTP------R----IKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQT--LVRQFQ 180 (337)
T ss_dssp EESS-SEEEEEECCCC--------E----EEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTE--EEEEEC
T ss_pred EcCC-CcEEEEECCCCCc------c----eeeecccCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCc--eeeeee
Confidence 8777 9999999943311 0 1122367888999999999998 99999999999999999876 566677
Q ss_pred CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccc-----------
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKA----------- 322 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~----------- 322 (489)
.|...|.+++|+|+++++++++.||.|++||+++++.+..+. +... +.+++|+|++..++....
T Consensus 181 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~----v~~~~~s~~~~~l~~~~~~~~i~~~~~~~ 255 (337)
T 1gxr_A 181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQ----IFSLGYCPTGEWLAVGMESSNVEVLHVNK 255 (337)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSC----EEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec-CCCc----eEEEEECCCCCEEEEEcCCCcEEEEECCC
Confidence 899999999999999999999999999999999988776664 4545 999999999988743211
Q ss_pred ----cceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEE
Q 037120 323 ----QSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIY 398 (489)
Q Consensus 323 ----~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (489)
....+...|..+.|+|++.++++.+.++. ..+++...+........ ...+..++|+|++ .+
T Consensus 256 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~~~~~~~~~~~~~~~~-------------~~~v~~~~~s~~~-~~ 320 (337)
T 1gxr_A 256 PDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSKE-------------SSSVLSCDISVDD-KY 320 (337)
T ss_dssp SCEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEEC-------------SSCEEEEEECTTS-CE
T ss_pred CCeEEEcCCccceeEEEECCCCCEEEEecCCCc-EEEEECCCCeEEEEecC-------------CCcEEEEEECCCC-CE
Confidence 12234667999999999998887776543 23444443332211100 0122345677764 56
Q ss_pred EEeecCCCcEEEEecc
Q 037120 399 AVGSSSDHGIHLLDFF 414 (489)
Q Consensus 399 l~sgs~d~~i~vwd~~ 414 (489)
+++++.|+.|++||+.
T Consensus 321 l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 321 IVTGSGDKKATVYEVI 336 (337)
T ss_dssp EEEEETTSCEEEEEEE
T ss_pred EEEecCCCeEEEEEEe
Confidence 7778899999999974
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-30 Score=247.86 Aligned_cols=197 Identities=14% Similarity=0.050 Sum_probs=148.9
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..+...|.+++|+|++++|++|+.||.|+|||+.+... ......+..|... |.+++|+|++. .|
T Consensus 51 ~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~-----------~~~~~~~~~~~~~---v~~~~~~~~~~-~l 115 (377)
T 3dwl_C 51 FSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGT-----------WKQTLVLLRLNRA---ATFVRWSPNED-KF 115 (377)
T ss_dssp BCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------C-----------CCCEEECCCCSSC---EEEEECCTTSS-CC
T ss_pred EecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCc-----------eeeeeEecccCCc---eEEEEECCCCC-EE
Confidence 556777899999999999999999999999999988440 1112223445555 99999999986 77
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCC-cccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCC-----
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSD-VQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGV----- 245 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~----- 245 (489)
++++.| +.|++||+..... ...... +.+ |...|++++|+|++. +|++++.|+.|++||++..+
T Consensus 116 ~~~~~d-~~i~iwd~~~~~~-----~~~~~~----~~~~h~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~ 184 (377)
T 3dwl_C 116 AVGSGA-RVISVCYFEQEND-----WWVSKH----LKRPLRSTILSLDWHPNNV-LLAAGCADRKAYVLSAYVRDVDAKP 184 (377)
T ss_dssp EEEESS-SCEEECCC----------CCCCEE----ECSSCCSCEEEEEECTTSS-EEEEEESSSCEEEEEECCSSCC-CC
T ss_pred EEEecC-CeEEEEEECCccc-----ceeeeE----eecccCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEEEecccCCCc
Confidence 777777 9999999954321 001111 244 899999999999998 99999999999999986322
Q ss_pred -----------cCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc----cceeecCCccCCCCeeEEEe
Q 037120 246 -----------LPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT----SAPFHNHKEVCHLPLTSLKL 310 (489)
Q Consensus 246 -----------~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~----~~~~~~~~~~~~~~v~~l~~ 310 (489)
..++..+ +|...|.+++|+|++++|++++.||.|++||+++++. +..+..|... |.+++|
T Consensus 185 ~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----v~~~~~ 259 (377)
T 3dwl_C 185 EASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLP----LRSLLW 259 (377)
T ss_dssp CSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSC----EEEEEE
T ss_pred cccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCc----eEEEEE
Confidence 1134444 8999999999999999999999999999999999987 7888888866 888888
Q ss_pred CCCCcceee
Q 037120 311 ASMLEKIGT 319 (489)
Q Consensus 311 ~~~~~~i~~ 319 (489)
+|++.++++
T Consensus 260 s~~~~~l~~ 268 (377)
T 3dwl_C 260 ANESAIVAA 268 (377)
T ss_dssp EETTEEEEE
T ss_pred cCCCCEEEE
Confidence 888766653
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-29 Score=237.96 Aligned_cols=254 Identities=15% Similarity=0.211 Sum_probs=181.3
Q ss_pred cccCCCCCCceeEEEe-----eC-CCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEec
Q 037120 148 HLLHIPLPQQLDAVRW-----NL-ANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSA 221 (489)
Q Consensus 148 ~~~h~~~~~~V~~v~~-----~~-~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 221 (489)
+.+|... |++++| ++ ++ .+|++|+.| ++|++||+....... . .......+.+|...|++++|+|
T Consensus 17 l~gH~~~---V~~~~~~~s~~~~~d~-~~l~sgs~D-~~v~iWd~~~~~~~~--~---~~~~~~~l~~h~~~V~~~~~~~ 86 (343)
T 2xzm_R 17 LEGHSDW---VTSIVAGFSQKENEDS-PVLISGSRD-KTVMIWKLYEEEQNG--Y---FGIPHKALTGHNHFVSDLALSQ 86 (343)
T ss_dssp EECCSSC---EEEEEECCCSSTTCCC-CEEEEEETT-SCEEEEEECSSCCSS--B---SEEEEEEECCCSSCEEEEEECS
T ss_pred eccchhh---hhheeeEEEeecCCCC-CEEEEEcCC-CEEEEEECCcCCccc--c---cccccchhccCCCceEEEEECC
Confidence 4567776 999999 66 54 589999988 999999995432110 0 1112233588999999999999
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCccc--ceeecCCc
Q 037120 222 VNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTS--APFHNHKE 299 (489)
Q Consensus 222 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~--~~~~~~~~ 299 (489)
++. ++++++.|++|++||+++++ ++..+.+|...|.+++|+|+++++++++.|++|++||++..... .....|..
T Consensus 87 ~~~-~l~s~s~D~~v~lwd~~~~~--~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 163 (343)
T 2xzm_R 87 ENC-FAISSSWDKTLRLWDLRTGT--TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSD 163 (343)
T ss_dssp STT-EEEEEETTSEEEEEETTSSC--EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSS
T ss_pred CCC-EEEEEcCCCcEEEEECCCCc--EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCc
Confidence 999 99999999999999999877 66677899999999999999999999999999999999843221 11225665
Q ss_pred cCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEE-------eeccceeeecCCCCC
Q 037120 300 VCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLD-------VYNSRVSHVHCPPPA 372 (489)
Q Consensus 300 ~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~-------~~~~~~~~~~~~~~~ 372 (489)
. |.+++|+|++.... .+.|.+.++++++.++. ..+++ .+.+|...
T Consensus 164 ~----v~~~~~~~~~~~~~----------------~~~~~~~~l~s~~~d~~-i~iwd~~~~~~~~~~~h~~~------- 215 (343)
T 2xzm_R 164 W----VSCVRYSPIMKSAN----------------KVQPFAPYFASVGWDGR-LKVWNTNFQIRYTFKAHESN------- 215 (343)
T ss_dssp C----EEEEEECCCCCSCS----------------CCCSSCCEEEEEETTSE-EEEEETTTEEEEEEECCSSC-------
T ss_pred e----eeeeeecccccccc----------------ccCCCCCEEEEEcCCCE-EEEEcCCCceeEEEcCcccc-------
Confidence 5 99999999875322 12355556666655543 12232 12222211
Q ss_pred CcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceE
Q 037120 373 WLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVT 452 (489)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 452 (489)
+..++|+|+ +.++++|+.|+.|+|||+.... .....+ .+...|.
T Consensus 216 -------------v~~~~~s~~-g~~l~sgs~dg~v~iwd~~~~~---------~~~~~~-------------~~~~~v~ 259 (343)
T 2xzm_R 216 -------------VNHLSISPN-GKYIATGGKDKKLLIWDILNLT---------YPQREF-------------DAGSTIN 259 (343)
T ss_dssp -------------EEEEEECTT-SSEEEEEETTCEEEEEESSCCS---------SCSEEE-------------ECSSCEE
T ss_pred -------------ceEEEECCC-CCEEEEEcCCCeEEEEECCCCc---------ccceee-------------cCCCcEE
Confidence 233556665 5678899999999999995440 222222 3556799
Q ss_pred EEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 453 ACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 453 ~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
+++|+|++.++++ +.|+.|.+|....
T Consensus 260 ~v~~sp~~~~la~-~~d~~v~iw~~~~ 285 (343)
T 2xzm_R 260 QIAFNPKLQWVAV-GTDQGVKIFNLMT 285 (343)
T ss_dssp EEEECSSSCEEEE-EESSCEEEEESSS
T ss_pred EEEECCCCCEEEE-ECCCCEEEEEeCC
Confidence 9999999987765 5678899997543
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-28 Score=243.69 Aligned_cols=303 Identities=10% Similarity=0.100 Sum_probs=221.1
Q ss_pred cccCCCc-eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPG-ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~-V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..|... +.|+.| ++++|++|+.||.|++||+.+.+... .+.+|... |.+++|+|++ .
T Consensus 117 l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~--------------~~~~h~~~---V~~l~~~~~~--~ 175 (464)
T 3v7d_B 117 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL--------------QLSGHDGG---VWALKYAHGG--I 175 (464)
T ss_dssp EECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE--------------EECCCSSC---EEEEEECSTT--E
T ss_pred EcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE--------------EEeCCCcC---EEEEEEcCCC--E
Confidence 4455556 577776 56799999999999999998854443 22456666 9999999986 8
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEec--CCCcEEEEEeCCCcEEEEECCCCCcC-
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSA--VNTSRLIASDTHGVVNIWDRRVGVLP- 247 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~l~s~s~dg~i~iwd~~~~~~~- 247 (489)
+++++.| |+|++||+..+ . ....+.+|...|.+++|++ ++. +|++++.|+.|++||++++...
T Consensus 176 l~s~s~d-g~i~vwd~~~~-----~-------~~~~~~~h~~~v~~l~~~~~~~~~-~l~s~s~d~~i~vwd~~~~~~~~ 241 (464)
T 3v7d_B 176 LVSGSTD-RTVRVWDIKKG-----C-------CTHVFEGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVP 241 (464)
T ss_dssp EEEEETT-SCEEEEETTTT-----E-------EEEEECCCSSCEEEEEEEESSSCE-EEEEEETTSCEEEEECCCCCCC-
T ss_pred EEEEeCC-CCEEEEECCCC-----c-------EEEEECCCCCccEEEEEecCCCCC-EEEEEcCCCcEEEeeCCCCcccc
Confidence 8888888 99999999432 1 1223378999999999995 555 9999999999999999976422
Q ss_pred --------------------ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeE
Q 037120 248 --------------------SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTS 307 (489)
Q Consensus 248 --------------------~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~ 307 (489)
......+|...|.++ +++++++++++.||.|++||+++++.+..+.+|... |.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~----v~~ 315 (464)
T 3v7d_B 242 DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR----IYS 315 (464)
T ss_dssp -----CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEE
T ss_pred cccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCC----EEE
Confidence 133455788888776 688999999999999999999999999999999877 999
Q ss_pred EEeCCCCcceeecc----------------ccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCC
Q 037120 308 LKLASMLEKIGTLK----------------AQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPP 371 (489)
Q Consensus 308 l~~~~~~~~i~~~~----------------~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 371 (489)
++|+|++..+++.. .....+...|..+.++ +.++++++.|+. ..+++...+........
T Consensus 316 ~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~-v~vwd~~~~~~~~~~~~-- 390 (464)
T 3v7d_B 316 TIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRGWDANDYSRKFSYHH-- 390 (464)
T ss_dssp EEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSE-EEEEETTTCCEEEEEEC--
T ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc-EEEEECCCCceeeeecC--
Confidence 99999998874322 1122346678888886 456666665543 33444443322211100
Q ss_pred CCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccch-hhHhhhhcccCCcccCCCc
Q 037120 372 AWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIES-LSERTKLKKENRFVPLSEG 450 (489)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~ 450 (489)
. ......+|.+++. ++++|+ |+.|++||+.++ +.+.. +. +|.+.
T Consensus 391 ----~-------~~~~~~~~~~~~~-~l~~~~-dg~i~iwd~~~g----------~~~~~~~~------------~~~~~ 435 (464)
T 3v7d_B 391 ----T-------NLSAITTFYVSDN-ILVSGS-ENQFNIYNLRSG----------KLVHANIL------------KDADQ 435 (464)
T ss_dssp ----T-------TCCCEEEEEECSS-EEEEEE-TTEEEEEETTTC----------CEEESCTT------------TTCSE
T ss_pred ----C-------CCccEEEEEeCCC-EEEEec-CCeEEEEECCCC----------cEEehhhc------------cCCCc
Confidence 0 1122345666654 666666 899999999998 77654 44 78999
Q ss_pred eEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 451 VTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 451 V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
|.+++|+ ....+++++.||.+.++.
T Consensus 436 v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 436 IWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred EEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 9999998 445677777888877764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-29 Score=265.36 Aligned_cols=224 Identities=13% Similarity=0.151 Sum_probs=176.1
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..+...|.+++|+|+|++||+|+.||.|+|||+.+..... .+.+|... |++++|+|+++ .|
T Consensus 51 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~--------------~~~~~~~~---v~~~~~s~~~~-~l 112 (814)
T 3mkq_A 51 IQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV--------------DFEAHPDY---IRSIAVHPTKP-YV 112 (814)
T ss_dssp EECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEE--------------EEECCSSC---EEEEEECSSSS-EE
T ss_pred EecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE--------------EEecCCCC---EEEEEEeCCCC-EE
Confidence 44566779999999999999999999999999998854433 12345555 99999999986 77
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEec-CCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSA-VNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
++++.| |+|++||+.... .....+.+|...|.+++|+| ++. .|++++.||.|++||++++... ..
T Consensus 113 ~~~~~d-g~i~vw~~~~~~-----------~~~~~~~~~~~~v~~~~~~p~~~~-~l~~~~~dg~v~vwd~~~~~~~-~~ 178 (814)
T 3mkq_A 113 LSGSDD-LTVKLWNWENNW-----------ALEQTFEGHEHFVMCVAFNPKDPS-TFASGCLDRTVKVWSLGQSTPN-FT 178 (814)
T ss_dssp EEEETT-SEEEEEEGGGTS-----------EEEEEEECCSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCSSCS-EE
T ss_pred EEEcCC-CEEEEEECCCCc-----------eEEEEEcCCCCcEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcce-eE
Confidence 788877 999999994321 11122367899999999999 666 9999999999999999876532 22
Q ss_pred eccCCCCceeEEEEee--cCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeecccc-----
Q 037120 251 LSTGSHGTLNSIQLHA--ENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQ----- 323 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p--~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~----- 323 (489)
....+...+.+++|+| ++.++++++.||.|++||+++++.+..+.+|... |++++|+|++..+++....
T Consensus 179 ~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~v~v 254 (814)
T 3mkq_A 179 LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN----VSFAVFHPTLPIIISGSEDGTLKI 254 (814)
T ss_dssp EECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSC----EEEEEECSSSSEEEEEETTSCEEE
T ss_pred EecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCC----EEEEEEcCCCCEEEEEeCCCeEEE
Confidence 3334558999999999 9999999999999999999999999999988877 9999999999877442211
Q ss_pred -----------ceeeccceeEEEeCCCCCeE-EEEEecCC
Q 037120 324 -----------SKIVSQEIHSIDLDPSCSYQ-LAFHLDDG 351 (489)
Q Consensus 324 -----------~~~~~~~i~~~~~~p~~~~~-~~~~~~~~ 351 (489)
...+...+..++++|++..+ ++.+.+++
T Consensus 255 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 294 (814)
T 3mkq_A 255 WNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNG 294 (814)
T ss_dssp EETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTE
T ss_pred EECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCC
Confidence 11234678999999999764 55555544
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-29 Score=241.80 Aligned_cols=285 Identities=11% Similarity=0.120 Sum_probs=182.5
Q ss_pred cccCCCceeEEEECCC---CcEEEEEecCCeEEEEeCCC-cccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCC
Q 037120 92 RSFGKPGISALDFDCK---GIYLVSATRSGCLTVHDFES-LYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLAN 167 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~---g~~la~g~~dg~i~vwd~~~-~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~ 167 (489)
+..|...|++++|+|+ |++||+|+.||.|+|||+.+ ..... ..+.+|... |.+++|+|++
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~-------------~~~~~h~~~---v~~~~~~~~~ 98 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIP-------------KAQQMHTGP---VLDVCWSDDG 98 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEE-------------EEEEECSSC---EEEEEECTTS
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeE-------------EEeccccCC---EEEEEECcCC
Confidence 5567788999999999 69999999999999999986 22211 123456666 9999999987
Q ss_pred CCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEE--ecCCCcEEEEEeCCCcEEEEECCCCC
Q 037120 168 QDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAF--SAVNTSRLIASDTHGVVNIWDRRVGV 245 (489)
Q Consensus 168 ~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~l~s~s~dg~i~iwd~~~~~ 245 (489)
. .|++++.| |.|++||+... ..+. ..+|...|++++| +|++. +|++++.||.|++||+++++
T Consensus 99 ~-~l~s~~~d-g~v~iwd~~~~-----~~~~--------~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~ 162 (368)
T 3mmy_A 99 S-KVFTASCD-KTAKMWDLSSN-----QAIQ--------IAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSN 162 (368)
T ss_dssp S-EEEEEETT-SEEEEEETTTT-----EEEE--------EEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSS
T ss_pred C-EEEEEcCC-CcEEEEEcCCC-----Ccee--------eccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCc
Confidence 5 77888888 99999999432 2211 1558899999999 88887 99999999999999999876
Q ss_pred cCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc---------------cceeecCCccCCCCeeEEEe
Q 037120 246 LPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT---------------SAPFHNHKEVCHLPLTSLKL 310 (489)
Q Consensus 246 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~---------------~~~~~~~~~~~~~~v~~l~~ 310 (489)
.+..+..| ..+.++.+ ....+++++.++.+++||++.... +......... -..+..
T Consensus 163 --~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 233 (368)
T 3mmy_A 163 --PMMVLQLP-ERCYCADV--IYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNK----PTGFAL 233 (368)
T ss_dssp --CSEEEECS-SCEEEEEE--ETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSC----EEEEEE
T ss_pred --EEEEEecC-CCceEEEe--cCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCC----CCeEEE
Confidence 44444444 34444444 455777888888888888876432 0011111111 111222
Q ss_pred -CCCCcce-eeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCc
Q 037120 311 -ASMLEKI-GTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRK 388 (489)
Q Consensus 311 -~~~~~~i-~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (489)
+.++... -.+.... ....+..+....... ......++. ..+..
T Consensus 234 ~~~dg~i~i~~~~~~~--~~~~~~~~~~~~~~~-------------~~~~~~~~~--------------------~~v~~ 278 (368)
T 3mmy_A 234 GSIEGRVAIHYINPPN--PAKDNFTFKCHRSNG-------------TNTSAPQDI--------------------YAVNG 278 (368)
T ss_dssp EETTSEEEEEESSCSC--HHHHSEEEECSEEC-----------------CCCEEE--------------------CCEEE
T ss_pred ecCCCcEEEEecCCCC--ccccceeeeeeeccc-------------ccccccccc--------------------cceEE
Confidence 2233211 1111000 000000000000000 000000000 01122
Q ss_pred ceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccC
Q 037120 389 PSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTK 468 (489)
Q Consensus 389 ~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~ 468 (489)
++|+|+ +.++++|+.|+.|+|||+.++ +.+..+. +|...|++++|+|++.+|++|+.
T Consensus 279 ~~~sp~-~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~------------~~~~~v~~~~~s~~g~~l~~~s~ 335 (368)
T 3mmy_A 279 IAFHPV-HGTLATVGSDGRFSFWDKDAR----------TKLKTSE------------QLDQPISACCFNHNGNIFAYASS 335 (368)
T ss_dssp EEECTT-TCCEEEEETTSCEEEEETTTT----------EEEEECC------------CCSSCEEEEEECTTSSCEEEEEC
T ss_pred EEEecC-CCEEEEEccCCeEEEEECCCC----------cEEEEec------------CCCCCceEEEECCCCCeEEEEec
Confidence 334443 457788899999999999988 7777777 89999999999999999999998
Q ss_pred cceeEEE
Q 037120 469 NSSLLVV 475 (489)
Q Consensus 469 dg~i~v~ 475 (489)
|+....|
T Consensus 336 d~~~~~~ 342 (368)
T 3mmy_A 336 YDWSKGH 342 (368)
T ss_dssp CCSTTCG
T ss_pred ccccccc
Confidence 8755543
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=9.8e-29 Score=240.27 Aligned_cols=157 Identities=18% Similarity=0.299 Sum_probs=126.2
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
.|++++|+|+|++||+|+.||.|+|||+.+.+... .+.+|... |.+++|+|++. .|++++.|
T Consensus 125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~--------------~~~~h~~~---v~~~~~~p~~~-~l~s~s~d 186 (393)
T 1erj_A 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM--------------ILQGHEQD---IYSLDYFPSGD-KLVSGSGD 186 (393)
T ss_dssp BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--------------EECCCSSC---EEEEEECTTSS-EEEEEETT
T ss_pred eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE--------------EEccCCCC---EEEEEEcCCCC-EEEEecCC
Confidence 49999999999999999999999999998844433 12456665 99999999986 77888888
Q ss_pred CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEec-CCCcEEEEEeCCCcEEEEECCCCCcCceeec----
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSA-VNTSRLIASDTHGVVNIWDRRVGVLPSLELS---- 252 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---- 252 (489)
++|++||++.. ..... ..|...+.+++|+| ++. +|++++.|+.|++||++++. ++..+
T Consensus 187 -~~v~iwd~~~~-----~~~~~--------~~~~~~v~~~~~~~~~~~-~l~~~s~d~~v~iwd~~~~~--~~~~~~~~~ 249 (393)
T 1erj_A 187 -RTVRIWDLRTG-----QCSLT--------LSIEDGVTTVAVSPGDGK-YIAAGSLDRAVRVWDSETGF--LVERLDSEN 249 (393)
T ss_dssp -SEEEEEETTTT-----EEEEE--------EECSSCEEEEEECSTTCC-EEEEEETTSCEEEEETTTCC--EEEEEC---
T ss_pred -CcEEEEECCCC-----eeEEE--------EEcCCCcEEEEEECCCCC-EEEEEcCCCcEEEEECCCCc--EEEeecccc
Confidence 99999999432 11111 12456899999999 666 99999999999999999876 33333
Q ss_pred ---cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCc
Q 037120 253 ---TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGR 289 (489)
Q Consensus 253 ---~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~ 289 (489)
.+|...|.+++|+|++++|++++.||+|++||+++..
T Consensus 250 ~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~ 289 (393)
T 1erj_A 250 ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289 (393)
T ss_dssp ---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred cCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence 4789999999999999999999999999999998753
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-30 Score=251.43 Aligned_cols=275 Identities=13% Similarity=0.216 Sum_probs=205.0
Q ss_pred eeEEEeeCCCCCEEEEE----------ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEE
Q 037120 158 LDAVRWNLANQDEVACA----------STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRL 227 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~----------~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 227 (489)
|.+++|+|++..+++++ +.| +.|++||+...... ..... ..|...|++++|+|++. +|
T Consensus 15 v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d-~~v~iw~~~~~~~~-----~~~~~-----~~~~~~v~~~~~s~~~~-~l 82 (416)
T 2pm9_A 15 TATFAWSHDKIPLLVSGTVSGTVDANFSTD-SSLELWSLLAADSE-----KPIAS-----LQVDSKFNDLDWSHNNK-II 82 (416)
T ss_dssp SCBCCBCSSSSCEEEEBCBSSCCCSSCCCC-CCCEEEESSSGGGC-----SCSCC-----CCCSSCEEEEEECSSSS-CE
T ss_pred cceEeeCCCCCCEEEEEecCcccccccCCC-CeEEEEEccCCCCC-----cEEEE-----EecCCceEEEEECCCCC-eE
Confidence 88899999987788888 677 99999999543211 11111 35788999999999999 99
Q ss_pred EEEeCCCcEEEEECCCCC--cCceeeccCCCCceeEEEEeec-CCEEEEEeCCCeEEEEEcCCCc------ccc---eee
Q 037120 228 IASDTHGVVNIWDRRVGV--LPSLELSTGSHGTLNSIQLHAE-NQIIFAAGKHGSIYLWDLRGGR------TSA---PFH 295 (489)
Q Consensus 228 ~s~s~dg~i~iwd~~~~~--~~~~~~~~~h~~~v~~~~~~p~-~~~l~~~~~dg~i~lwd~~~~~------~~~---~~~ 295 (489)
++++.||.|++||+.... ...+..+.+|...|.+++|+|+ +.++++++.||.|++||+++++ ... .+.
T Consensus 83 ~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 162 (416)
T 2pm9_A 83 AGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSM 162 (416)
T ss_dssp EEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSC
T ss_pred EEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccccccccccccc
Confidence 999999999999998721 1145567789999999999998 8999999999999999999886 322 235
Q ss_pred cCCccCCCCeeEEEeCCC-Ccceeeccc----------------cceee------ccceeEEEeCCCCCeEEEEEecCC-
Q 037120 296 NHKEVCHLPLTSLKLASM-LEKIGTLKA----------------QSKIV------SQEIHSIDLDPSCSYQLAFHLDDG- 351 (489)
Q Consensus 296 ~~~~~~~~~v~~l~~~~~-~~~i~~~~~----------------~~~~~------~~~i~~~~~~p~~~~~~~~~~~~~- 351 (489)
.|... |.+++|+|+ +..+++... ....+ ...|.++.|+|++..+++.+.+++
T Consensus 163 ~~~~~----v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~ 238 (416)
T 2pm9_A 163 SSVDE----VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN 238 (416)
T ss_dssp CSSCC----CCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS
T ss_pred CCCCC----eeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC
Confidence 66656 999999999 455533110 01111 567999999999864444444443
Q ss_pred --ceEEEEeeccc-eeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcc
Q 037120 352 --WSGVLDVYNSR-VSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNED 428 (489)
Q Consensus 352 --w~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~ 428 (489)
-..+++...+. ... .+.. .....+..++|+|.++.++++|+.|+.|++||+.++ +.
T Consensus 239 ~~~i~~~d~~~~~~~~~------~~~~-----~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~----------~~ 297 (416)
T 2pm9_A 239 DPSILIWDLRNANTPLQ------TLNQ-----GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA----------EQ 297 (416)
T ss_dssp SCCCCEEETTSTTSCSB------CCCS-----CCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC----------CE
T ss_pred CceEEEEeCCCCCCCcE------Eeec-----CccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC----------cc
Confidence 33455554431 111 1110 011234567888867888999999999999999988 77
Q ss_pred cchhhHhhhhcccCCcccCCCceEEEEeeCCC-CeEEeccCcceeEEEeccccc
Q 037120 429 IESLSERTKLKKENRFVPLSEGVTACVTHPLN-NTIVAGTKNSSLLVVSQKQQC 481 (489)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~-~~i~sgs~dg~i~v~~~~~~~ 481 (489)
+..+. +|.+.|++++|+|++ .+|++++.||.|.||..+...
T Consensus 298 ~~~~~------------~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 298 LSQFP------------ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp EEEEE------------CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred ceeec------------CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence 77777 899999999999999 799999999999999876543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=240.85 Aligned_cols=286 Identities=12% Similarity=0.126 Sum_probs=200.2
Q ss_pred ccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 93 SFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
..|...|.+++|+|++++|++|+.||.|+|||+....... .......|... |.+++|+|++...|+
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~-----------~~~~~~~~~~~---v~~~~~~~~~~~~l~ 73 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV-----------DLLQSLRYKHP---LLCCNFIDNTDLQIY 73 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE-----------EEEEEEECSSC---EEEEEEEESSSEEEE
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccc-----------cceeeeecCCc---eEEEEECCCCCcEEE
Confidence 3566779999999999999999999999999998733110 01112356555 999999999642677
Q ss_pred EEecCCCEEEEEEe-ccCCCCCceeeeeceeeeeecCC--cccCeeEEEEecCCCcEEEEEeCCCcEEEEECCC------
Q 037120 173 CASTRSNVVSIYDI-GYISDEPVEVLKTRRSVTVVGSD--VQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRV------ 243 (489)
Q Consensus 173 s~~~d~g~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~------ 243 (489)
+++.| |.|++||+ .... . ..+.+ |...|.+++|+| +. .|++++.|+.|++||+++
T Consensus 74 ~~~~d-g~i~~wd~~~~~~---------~----~~~~~~~~~~~v~~l~~~~-~~-~l~s~~~d~~i~iwd~~~~~~~~~ 137 (342)
T 1yfq_A 74 VGTVQ-GEILKVDLIGSPS---------F----QALTNNEANLGICRICKYG-DD-KLIAASWDGLIEVIDPRNYGDGVI 137 (342)
T ss_dssp EEETT-SCEEEECSSSSSS---------E----EECBSCCCCSCEEEEEEET-TT-EEEEEETTSEEEEECHHHHTTBCE
T ss_pred EEcCC-CeEEEEEeccCCc---------e----EeccccCCCCceEEEEeCC-CC-EEEEEcCCCeEEEEcccccccccc
Confidence 77777 99999998 5431 1 12366 999999999999 77 999999999999999986
Q ss_pred ---CCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC-Cccc--ceeecCCccCCCCeeEEEeCC-CCcc
Q 037120 244 ---GVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRG-GRTS--APFHNHKEVCHLPLTSLKLAS-MLEK 316 (489)
Q Consensus 244 ---~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~-~~~~--~~~~~~~~~~~~~v~~l~~~~-~~~~ 316 (489)
++ ++..+ .|...|.+++|+|++ +++++.|+.|++||+++ +... .....|... |.+++|+| ++..
T Consensus 138 ~~~~~--~~~~~-~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~----i~~i~~~~~~~~~ 208 (342)
T 1yfq_A 138 AVKNL--NSNNT-KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQ----IRDVALLPKEQEG 208 (342)
T ss_dssp EEEES--CSSSS-SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSC----EEEEEECSGGGCE
T ss_pred cccCC--eeeEE-eeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCc----eeEEEECCCCCCE
Confidence 44 34344 388999999999987 88999999999999998 6542 222344544 88888888 8776
Q ss_pred eeeccccceeeccceeEEEeCCC-----CCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCccee
Q 037120 317 IGTLKAQSKIVSQEIHSIDLDPS-----CSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSW 391 (489)
Q Consensus 317 i~~~~~~~~~~~~~i~~~~~~p~-----~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (489)
++...... .|.-..+... ..... .+.++.... . .......+..++|
T Consensus 209 l~~~~~dg-----~i~i~~~~~~~~~~~~~~~~-------------~~~~~~~~~--------~---~~~~~~~i~~~~~ 259 (342)
T 1yfq_A 209 YACSSIDG-----RVAVEFFDDQGDDYNSSKRF-------------AFRCHRLNL--------K---DTNLAYPVNSIEF 259 (342)
T ss_dssp EEEEETTS-----EEEEEECCTTCCSTTCTTCE-------------EEECCCCCT--------T---CCSSCCCEEEEEE
T ss_pred EEEEecCC-----cEEEEEEcCCCcccccccce-------------eeecccccc--------c---ccccceeEEEEEE
Confidence 65422111 1111112111 01100 011110000 0 0000012334566
Q ss_pred ecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccC-CCceEEEEeeCCCCeEEeccCcc
Q 037120 392 LSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPL-SEGVTACVTHPLNNTIVAGTKNS 470 (489)
Q Consensus 392 ~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~va~~p~~~~i~sgs~dg 470 (489)
+|+ +.++++|+.|+.|++||+.++ +.+..+. +| .+.|++++ |++.+|++|+.||
T Consensus 260 s~~-~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~------------~~h~~~v~~~~--~~~~~l~s~s~Dg 314 (342)
T 1yfq_A 260 SPR-HKFLYTAGSDGIISCWNLQTR----------KKIKNFA------------KFNEDSVVKIA--CSDNILCLATSDD 314 (342)
T ss_dssp CTT-TCCEEEEETTSCEEEEETTTT----------EEEEECC------------CCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred cCC-CCEEEEecCCceEEEEcCccH----------hHhhhhh------------cccCCCceEec--CCCCeEEEEecCC
Confidence 665 456788899999999999988 7777776 88 99999999 9999999999999
Q ss_pred e
Q 037120 471 S 471 (489)
Q Consensus 471 ~ 471 (489)
.
T Consensus 315 ~ 315 (342)
T 1yfq_A 315 T 315 (342)
T ss_dssp H
T ss_pred c
Confidence 8
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.6e-29 Score=244.50 Aligned_cols=277 Identities=14% Similarity=0.194 Sum_probs=197.0
Q ss_pred cCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 94 FGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
.+..+|.|++| ++++|++|+.||.|+|||+.+.+... .+.+|... |.+++| ++ .++++
T Consensus 131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~--------------~~~~h~~~---v~~l~~--~~-~~l~s 188 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR--------------ILTGHTGS---VLCLQY--DE-RVIIT 188 (435)
T ss_dssp SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE--------------EECCCSSC---EEEEEC--CS-SEEEE
T ss_pred CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE--------------EEcCCCCc---EEEEEE--CC-CEEEE
Confidence 34566999887 78999999999999999998844433 22456655 999999 33 48888
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-ceeec
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-SLELS 252 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~ 252 (489)
|+.| |+|++||+..+ . ....+.+|...|.+++|+ +. .+++|+.||.|++||+++++.. .....
T Consensus 189 g~~d-g~i~vwd~~~~-----~-------~~~~~~~h~~~v~~l~~~--~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~ 252 (435)
T 1p22_A 189 GSSD-STVRVWDVNTG-----E-------MLNTLIHHCEAVLHLRFN--NG-MMVTCSKDRSIAVWDMASPTDITLRRVL 252 (435)
T ss_dssp EETT-SCEEEEESSSC-----C-------EEEEECCCCSCEEEEECC--TT-EEEEEETTSCEEEEECSSSSCCEEEEEE
T ss_pred EcCC-CeEEEEECCCC-----c-------EEEEEcCCCCcEEEEEEc--CC-EEEEeeCCCcEEEEeCCCCCCceeeeEe
Confidence 9888 99999999432 1 122237799999999996 34 8999999999999999987633 22456
Q ss_pred cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeecccee
Q 037120 253 TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIH 332 (489)
Q Consensus 253 ~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~ 332 (489)
.+|...|.+++| +++++++|+.||.|++||+++++.+..+.+|... |.++.|+ +..++
T Consensus 253 ~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~----v~~~~~~--~~~l~-------------- 310 (435)
T 1p22_A 253 VGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG----IACLQYR--DRLVV-------------- 310 (435)
T ss_dssp CCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSC----EEEEEEE--TTEEE--------------
T ss_pred cCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCc----EEEEEeC--CCEEE--------------
Confidence 689999999999 7889999999999999999999999999988877 8888773 23332
Q ss_pred EEEeCCCCCeEEEEEecCCceEEEEe--------eccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecC
Q 037120 333 SIDLDPSCSYQLAFHLDDGWSGVLDV--------YNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSS 404 (489)
Q Consensus 333 ~~~~~p~~~~~~~~~~~~~w~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~ 404 (489)
+++.++. ..+++. +.+|...+.+. .| .+.++++|+.
T Consensus 311 ------------~g~~dg~-i~iwd~~~~~~~~~~~~h~~~v~~~--------------------~~---~~~~l~sg~~ 354 (435)
T 1p22_A 311 ------------SGSSDNT-IRLWDIECGACLRVLEGHEELVRCI--------------------RF---DNKRIVSGAY 354 (435)
T ss_dssp ------------EEETTSC-EEEEETTTCCEEEEECCCSSCEEEE--------------------EC---CSSEEEEEET
T ss_pred ------------EEeCCCe-EEEEECCCCCEEEEEeCCcCcEEEE--------------------Ee---cCCEEEEEeC
Confidence 2222221 112222 22222222221 12 2668999999
Q ss_pred CCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccccc
Q 037120 405 DHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQC 481 (489)
Q Consensus 405 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~ 481 (489)
||.|++||+........ ......+..+. +|.+.|++++| ++..|++|+.||.|.||..+...
T Consensus 355 dg~i~vwd~~~~~~~~~-~~~~~~~~~~~------------~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 355 DGKIKVWDLVAALDPRA-PAGTLCLRTLV------------EHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp TSCEEEEEHHHHTSTTS-CTTTTEEEEEC------------CCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred CCcEEEEECCCCCCccc-cccchheeecc------------CCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence 99999999976510000 00000233344 89999999999 67899999999999999876554
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-28 Score=229.72 Aligned_cols=220 Identities=13% Similarity=0.168 Sum_probs=169.5
Q ss_pred ccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecC--CCcE
Q 037120 149 LLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAV--NTSR 226 (489)
Q Consensus 149 ~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~ 226 (489)
.+|... |.+++|+|++. .|++++.| ++|+|||+...... ...++.+|...|++++|+++ +. +
T Consensus 6 ~~h~~~---V~~~~~s~~g~-~las~s~D-~~v~iw~~~~~~~~----------~~~~l~gH~~~V~~v~~s~~~~g~-~ 69 (297)
T 2pm7_B 6 NAHNEM---IHDAVMDYYGK-RMATCSSD-KTIKIFEVEGETHK----------LIDTLTGHEGPVWRVDWAHPKFGT-I 69 (297)
T ss_dssp CSCSSC---EEEEEECTTSS-EEEEEETT-SCEEEEEBCSSCBC----------CCEEECCCSSCEEEEEECCGGGCS-E
T ss_pred cCCcCc---eEEEEECCCCC-EEEEEeCC-CEEEEEecCCCCcE----------EEEEEccccCCeEEEEecCCCcCC-E
Confidence 456665 99999999986 88888888 99999999432111 12234889999999999864 66 9
Q ss_pred EEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeec--CCEEEEEeCCCeEEEEEcCCCcc--cceeecCCccCC
Q 037120 227 LIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAE--NQIIFAAGKHGSIYLWDLRGGRT--SAPFHNHKEVCH 302 (489)
Q Consensus 227 l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~~ 302 (489)
|++|+.|++|++||+++++...+..+..|...|.+++|+|+ +.+|++++.||+|++||++++.. ...+.+|...
T Consensus 70 l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~-- 147 (297)
T 2pm7_B 70 LASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG-- 147 (297)
T ss_dssp EEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSC--
T ss_pred EEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCc--
Confidence 99999999999999998753344456689999999999998 88999999999999999987643 3456677766
Q ss_pred CCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCcccc
Q 037120 303 LPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSAD 382 (489)
Q Consensus 303 ~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (489)
|.+++|+|++..-. +. + .....
T Consensus 148 --v~~~~~~p~~~~~~---------------------~~-------------------~----------~~~~~------ 169 (297)
T 2pm7_B 148 --VNSASWAPATIEED---------------------GE-------------------H----------NGTKE------ 169 (297)
T ss_dssp --EEEEEECCCC--------------------------------------------------------------------
T ss_pred --cceEeecCCccccc---------------------cc-------------------C----------CCCCC------
Confidence 88888887642100 00 0 00001
Q ss_pred ccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCc----ccchhhHhhhhcccCCcccCCCceEEEEeeC
Q 037120 383 QLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNE----DIESLSERTKLKKENRFVPLSEGVTACVTHP 458 (489)
Q Consensus 383 ~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p 458 (489)
+.++++|+.|+.|+|||+.++ + ....+. +|.+.|.+++|+|
T Consensus 170 -------------~~~l~sgs~D~~v~lwd~~~~----------~~~~~~~~~l~------------~H~~~V~~v~~sp 214 (297)
T 2pm7_B 170 -------------SRKFVTGGADNLVKIWKYNSD----------AQTYVLESTLE------------GHSDWVRDVAWSP 214 (297)
T ss_dssp -------------CCEEEEEETTSCEEEEEEETT----------TTEEEEEEEEC------------CCSSCEEEEEECC
T ss_pred -------------cceEEEEcCCCcEEEEEEcCC----------CceEEEEEEec------------CCCCceEEEEECC
Confidence 568999999999999999876 3 233455 8999999999999
Q ss_pred CC---CeEEeccCcceeEEEeccc
Q 037120 459 LN---NTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 459 ~~---~~i~sgs~dg~i~v~~~~~ 479 (489)
++ .+||+|+.||+|+||..+.
T Consensus 215 ~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 215 TVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp CCSSSEEEEEEETTSCEEEEEESS
T ss_pred CCCCceEEEEEECCCcEEEEEeCC
Confidence 85 7999999999999997654
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=247.88 Aligned_cols=267 Identities=11% Similarity=0.050 Sum_probs=178.9
Q ss_pred cccCCCceeEEEECC-CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDC-KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~-~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..|...|++|+|+| ++.+|++|+.||+|+|||+++...... ..+......+.+++|+|++. +
T Consensus 160 ~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~-~ 223 (435)
T 4e54_B 160 GIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVF---------------ASSDTINIWFCSLDVSASSR-M 223 (435)
T ss_dssp CCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEE---------------ECCSSCSCCCCCEEEETTTT-E
T ss_pred ccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEE---------------eccCCCCccEEEEEECCCCC-E
Confidence 345677799999998 689999999999999999987332211 11111112278899999985 8
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-ce
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-SL 249 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~ 249 (489)
|++|+.| |.|++||++.. ....+.+|...|++++|+|+++.+|++++.|+.|++||+++.+.. .+
T Consensus 224 l~~g~~d-g~i~~wd~~~~-------------~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~ 289 (435)
T 4e54_B 224 VVTGDNV-GNVILLNMDGK-------------ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASF 289 (435)
T ss_dssp EEEECSS-SBEEEEESSSC-------------BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCC
T ss_pred EEEEeCC-CcEeeeccCcc-------------eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceE
Confidence 8888888 99999998321 112247899999999999999878999999999999999986533 23
Q ss_pred eeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccC--CCCeeEEEeCCCCcceeeccccceee
Q 037120 250 ELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVC--HLPLTSLKLASMLEKIGTLKAQSKIV 327 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~--~~~v~~l~~~~~~~~i~~~~~~~~~~ 327 (489)
....+|...|++++|+|++.+|++++.||.|+|||+++++....+..|.... ...+....|+|++..+.
T Consensus 290 ~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 360 (435)
T 4e54_B 290 LYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIV--------- 360 (435)
T ss_dssp SBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEE---------
T ss_pred EEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEE---------
Confidence 3345899999999999999999999999999999999998876666554321 11133455666655443
Q ss_pred ccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcc-eeecCCcEEEEeecCCC
Q 037120 328 SQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKP-SWLSTNSIYAVGSSSDH 406 (489)
Q Consensus 328 ~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~sgs~d~ 406 (489)
+.+++++..++....++....+++..++........ ... ..+..+ .|+|+| .+|++|+ |+
T Consensus 361 ------~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~-----~~~------~~v~s~~~fspdg-~~lasg~-d~ 421 (435)
T 4e54_B 361 ------VGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYD-----PES------SGISSLNEFNPMG-DTLASAM-GY 421 (435)
T ss_dssp ------EECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECC-----SSC------CCCCCEEEECTTS-SCEEEEC-SS
T ss_pred ------EEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeC-----CCC------CcEEEEEEECCCC-CEEEEEc-CC
Confidence 233344443333222222223344333333221110 000 011122 466665 4666765 78
Q ss_pred cEEEEeccCC
Q 037120 407 GIHLLDFFPG 416 (489)
Q Consensus 407 ~i~vwd~~~~ 416 (489)
.|+|||+.++
T Consensus 422 ~i~iW~~~~g 431 (435)
T 4e54_B 422 HILIWSQQEA 431 (435)
T ss_dssp EEEECCCC--
T ss_pred cEEEEECCcC
Confidence 9999999877
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-28 Score=238.71 Aligned_cols=280 Identities=11% Similarity=0.097 Sum_probs=203.8
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEe----ccCCCCCceeeeeceeeeeecC------CcccCeeEEEEecCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDI----GYISDEPVEVLKTRRSVTVVGS------DVQKGLSDLAFSAVNTSRL 227 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~----~~~~~~~~~~~~~~~~~~~~~~------~h~~~v~~~~~~~~~~~~l 227 (489)
|.+++|+|++..+|++++.| |.|++||+ ..+... ..+.....+...+. +|...|++++|+|++. +|
T Consensus 48 v~~~~~s~~~~~~l~~~~~d-g~i~iw~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l 123 (425)
T 1r5m_A 48 IVSSTWNPLDESILAYGEKN-SVARLARIVETDQEGKKY--WKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN-SI 123 (425)
T ss_dssp CSEEEECSSCTTEEEEEETB-TEEEEEEEEEC------C--EEEEEEEEEECCCCCC------CBCEEEEEECTTSS-EE
T ss_pred eEEEEECCCCCcEEEEecCC-ceEEEEEEecccCCcccc--ccccccccccccccccccccCCCCceEEEEEcCCCC-EE
Confidence 99999999987588888888 99999999 443210 01111111212222 3688999999999998 99
Q ss_pred EEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccC------
Q 037120 228 IASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVC------ 301 (489)
Q Consensus 228 ~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~------ 301 (489)
++++.||.|++|| .+++ .+..+..|...|.+++|+|+++++++++.||.|++||+++++.+..+..+....
T Consensus 124 ~~~~~dg~i~i~~-~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 200 (425)
T 1r5m_A 124 VTGVENGELRLWN-KTGA--LLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAE 200 (425)
T ss_dssp EEEETTSCEEEEE-TTSC--EEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC----------
T ss_pred EEEeCCCeEEEEe-CCCC--eeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeec
Confidence 9999999999999 3434 566677899999999999999999999999999999999998877776554220
Q ss_pred -----CCCeeEEEeCCCCcceeecc---------------ccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeecc
Q 037120 302 -----HLPLTSLKLASMLEKIGTLK---------------AQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNS 361 (489)
Q Consensus 302 -----~~~v~~l~~~~~~~~i~~~~---------------~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~ 361 (489)
...+.++.|++++..+.... .....+...|..+.|+|++.++++++.++. ..+++...+
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~ 279 (425)
T 1r5m_A 201 NHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGT-LRIWHGGNG 279 (425)
T ss_dssp -----CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEECSSSB
T ss_pred cccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCE-EEEEECCCC
Confidence 01178888988876552211 112235678999999999998887776554 234444333
Q ss_pred ceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhccc
Q 037120 362 RVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKE 441 (489)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (489)
........ . ...+..++|+|++ ++++++.|+.|++||+.++ +.+..+.
T Consensus 280 ~~~~~~~~------~------~~~i~~~~~~~~~--~l~~~~~d~~i~i~d~~~~----------~~~~~~~-------- 327 (425)
T 1r5m_A 280 NSQNCFYG------H------SQSIVSASWVGDD--KVISCSMDGSVRLWSLKQN----------TLLALSI-------- 327 (425)
T ss_dssp SCSEEECC------C------SSCEEEEEEETTT--EEEEEETTSEEEEEETTTT----------EEEEEEE--------
T ss_pred ccceEecC------C------CccEEEEEECCCC--EEEEEeCCCcEEEEECCCC----------cEeEecc--------
Confidence 32221110 0 1223457888887 8888999999999999988 7777766
Q ss_pred CCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccccc
Q 037120 442 NRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQC 481 (489)
Q Consensus 442 ~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~ 481 (489)
.|...|.+++|+|++.+|++|+.||.|.||..+...
T Consensus 328 ----~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~ 363 (425)
T 1r5m_A 328 ----VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN 363 (425)
T ss_dssp ----CTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred ----cCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence 899999999999999999999999999999876543
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-28 Score=229.33 Aligned_cols=250 Identities=14% Similarity=0.226 Sum_probs=183.6
Q ss_pred ccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcE
Q 037120 147 KHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSR 226 (489)
Q Consensus 147 ~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 226 (489)
.+.+|... |++++|+|++. +|++++.| |.|++||+... . ....+.+|...|.+++|+|+++ +
T Consensus 18 ~~~gh~~~---v~~~~~s~~~~-~l~s~~~d-g~i~iw~~~~~-----~-------~~~~~~~h~~~v~~~~~~~~~~-~ 79 (312)
T 4ery_A 18 TLAGHTKA---VSSVKFSPNGE-WLASSSAD-KLIKIWGAYDG-----K-------FEKTISGHKLGISDVAWSSDSN-L 79 (312)
T ss_dssp EECCCSSC---EEEEEECTTSS-EEEEEETT-SCEEEEETTTC-----C-------EEEEECCCSSCEEEEEECTTSS-E
T ss_pred EEcccCCc---EEEEEECCCCC-EEEEeeCC-CeEEEEeCCCc-----c-------cchhhccCCCceEEEEEcCCCC-E
Confidence 34567777 99999999986 78888888 99999998432 1 1122378999999999999998 9
Q ss_pred EEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCee
Q 037120 227 LIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLT 306 (489)
Q Consensus 227 l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 306 (489)
|++++.|+.|++||+++++ ++..+.+|...|.+++|+|+++++++++.||.|++||+++++.+..+..|... |.
T Consensus 80 l~s~~~d~~i~vwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----v~ 153 (312)
T 4ery_A 80 LVSASDDKTLKIWDVSSGK--CLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP----VS 153 (312)
T ss_dssp EEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC----EE
T ss_pred EEEECCCCEEEEEECCCCc--EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCc----EE
Confidence 9999999999999999877 67777899999999999999999999999999999999999888888888766 88
Q ss_pred EEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCC
Q 037120 307 SLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHL 386 (489)
Q Consensus 307 ~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (489)
+++|+|++..+++. +.++. ..+++...+........ .. ....
T Consensus 154 ~~~~~~~~~~l~~~--------------------------~~d~~-i~~wd~~~~~~~~~~~~------~~-----~~~~ 195 (312)
T 4ery_A 154 AVHFNRDGSLIVSS--------------------------SYDGL-CRIWDTASGQCLKTLID------DD-----NPPV 195 (312)
T ss_dssp EEEECTTSSEEEEE--------------------------ETTSC-EEEEETTTCCEEEEECC------SS-----CCCE
T ss_pred EEEEcCCCCEEEEE--------------------------eCCCc-EEEEECCCCceeeEEec------cC-----CCce
Confidence 88888877665432 11111 11222222211110000 00 0111
Q ss_pred CcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceE--EEEe-eCCCCeE
Q 037120 387 RKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVT--ACVT-HPLNNTI 463 (489)
Q Consensus 387 ~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~--~va~-~p~~~~i 463 (489)
..++|.|+ +.++++++.|+.|++||+.++ +.+..+. +|...+. ...+ .+++.+|
T Consensus 196 ~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~----------~~~~~~~------------~~~~~~~~~~~~~~~~~~~~l 252 (312)
T 4ery_A 196 SFVKFSPN-GKYILAATLDNTLKLWDYSKG----------KCLKTYT------------GHKNEKYCIFANFSVTGGKWI 252 (312)
T ss_dssp EEEEECTT-SSEEEEEETTTEEEEEETTTT----------EEEEEEC------------SSCCSSSCCCEEEECSSSCEE
T ss_pred EEEEECCC-CCEEEEEcCCCeEEEEECCCC----------cEEEEEE------------ecCCceEEEEEEEEeCCCcEE
Confidence 23455565 456778899999999999988 6666655 6655432 2334 4677899
Q ss_pred EeccCcceeEEEeccccc
Q 037120 464 VAGTKNSSLLVVSQKQQC 481 (489)
Q Consensus 464 ~sgs~dg~i~v~~~~~~~ 481 (489)
++|+.||.|.||..+...
T Consensus 253 ~sg~~dg~i~vwd~~~~~ 270 (312)
T 4ery_A 253 VSGSEDNLVYIWNLQTKE 270 (312)
T ss_dssp EECCTTSCEEEEETTTCC
T ss_pred EEECCCCEEEEEECCCch
Confidence 999999999999876543
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=254.81 Aligned_cols=193 Identities=15% Similarity=0.238 Sum_probs=157.4
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|...|.+++|+|+|++|++|+.||+|+|||+.+..... .+.+|... |.+++|+|++. .|
T Consensus 426 ~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~--------------~~~~h~~~---v~~~~~s~~~~-~l 487 (694)
T 3dm0_A 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTR--------------RFVGHTKD---VLSVAFSLDNR-QI 487 (694)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE--------------EEECCSSC---EEEEEECTTSS-CE
T ss_pred ecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCccee--------------EEeCCCCC---EEEEEEeCCCC-EE
Confidence 45677789999999999999999999999999998844333 23557666 99999999986 77
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCC-cEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT-SRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
++++.| ++|++||+... .... ......+|...|.+++|+|++. ..|++++.|++|++||+++.+ +..
T Consensus 488 ~s~s~D-~~i~iwd~~~~-----~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~--~~~ 555 (694)
T 3dm0_A 488 VSASRD-RTIKLWNTLGE-----CKYT----ISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK--LRS 555 (694)
T ss_dssp EEEETT-SCEEEECTTSC-----EEEE----ECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC--EEE
T ss_pred EEEeCC-CEEEEEECCCC-----ccee----eccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc--EEE
Confidence 888888 99999998321 1111 1112367999999999999873 389999999999999999876 666
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceee
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
.+.+|.+.|++++|+|++++|++++.||+|++||+++++.+..+.. ... |.+++|+|++..+..
T Consensus 556 ~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~-~~~----v~~~~~sp~~~~l~~ 619 (694)
T 3dm0_A 556 TLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEA-NSV----IHALCFSPNRYWLCA 619 (694)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBC-SSC----EEEEEECSSSSEEEE
T ss_pred EEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecC-CCc----EEEEEEcCCCcEEEE
Confidence 7789999999999999999999999999999999999988776654 234 888999988876643
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-28 Score=231.52 Aligned_cols=198 Identities=14% Similarity=0.097 Sum_probs=158.5
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..+...|.+++|+|++++|++|+.||.|++||+.+..... ......|... |.+++|+|++. .|
T Consensus 48 ~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~------------~~~~~~~~~~---v~~~~~~~~~~-~l 111 (372)
T 1k8k_C 48 LKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP------------TLVILRINRA---ARCVRWAPNEK-KF 111 (372)
T ss_dssp EECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEE------------EEECCCCSSC---EEEEEECTTSS-EE
T ss_pred ecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeee------------eEEeecCCCc---eeEEEECCCCC-EE
Confidence 44566789999999999999999999999999997743222 1112334444 99999999985 78
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCC-------
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVG------- 244 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~------- 244 (489)
++++.| +.|++||+...... .... ....+|...|.+++|+|++. +|++++.||.|++||++..
T Consensus 112 ~~~~~d-~~v~i~d~~~~~~~--~~~~------~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~~~d~~~~~~~~~~~ 181 (372)
T 1k8k_C 112 AVGSGS-RVISICYFEQENDW--WVCK------HIKKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPA 181 (372)
T ss_dssp EEEETT-SSEEEEEEETTTTE--EEEE------EECTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCC
T ss_pred EEEeCC-CEEEEEEecCCCcc--eeee------eeecccCCCeeEEEEcCCCC-EEEEEcCCCCEEEEEccccccccccc
Confidence 888877 99999999543210 1111 11267889999999999998 9999999999999997521
Q ss_pred ---------CcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCc
Q 037120 245 ---------VLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLE 315 (489)
Q Consensus 245 ---------~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 315 (489)
...++..+..|...|.+++|+|+++++++++.||.|++||+++++.+..+..|... |.+++|+|++.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~----v~~~~~~~~~~ 257 (372)
T 1k8k_C 182 PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP----LLAVTFITESS 257 (372)
T ss_dssp CBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCC----EEEEEEEETTE
T ss_pred ccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCC----eEEEEEecCCC
Confidence 11256666689999999999999999999999999999999999999999988766 99999999988
Q ss_pred ceee
Q 037120 316 KIGT 319 (489)
Q Consensus 316 ~i~~ 319 (489)
+++.
T Consensus 258 ~l~~ 261 (372)
T 1k8k_C 258 LVAA 261 (372)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7754
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-28 Score=237.22 Aligned_cols=264 Identities=11% Similarity=0.020 Sum_probs=183.1
Q ss_pred CCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 96 KPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
..+|.+++|+|||+++|+++.|++|+ |..... .. .+|... |.+++|+|++
T Consensus 15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~-----------~l------~gh~~~---v~~V~FsPdg-------- 64 (588)
T 2j04_A 15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK-----------DI------NCNSKN---LFHVKEFPLE-------- 64 (588)
T ss_dssp SSSSCCEEECTTSCEEEECSSSEEEE--EECCCS-----------CC------SSBGGG---TEEEEEECCC--------
T ss_pred hccEEEEEECCCCCEEEEEcCCceee--cccccc-----------ee------cCCCcc---EEEEEECCCC--------
Confidence 36799999999999999999999999 644311 11 345555 8899999997
Q ss_pred cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCC
Q 037120 176 TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGS 255 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h 255 (489)
.+ +.+.+|+.... .. .. ..|...|.+++|+|+|. .|++++.||.|++||... ++..+. |
T Consensus 65 ~~-~~~~~~~~~~~-----~~---~~------~~~~~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~----~l~~l~-~ 123 (588)
T 2j04_A 65 FE-NKLDFELAQQN-----GL---LN------SQPVCYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNK----MLTNLD-S 123 (588)
T ss_dssp CC-CTTTTSCCCSS-----CS---ST------TSCSCCEEEEEECSSSS-CEEEEETTSCEEEEETTE----EEEECC-C
T ss_pred Cc-ceEEEEeCCCc-----eE---ee------cCCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCc----eeeecc-C
Confidence 34 77777775211 10 11 24577999999999999 999999999999999543 455555 5
Q ss_pred CC-----ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-------ccee----ecCCccCCCCeeEEEeCCCCcceee
Q 037120 256 HG-----TLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-------SAPF----HNHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 256 ~~-----~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-------~~~~----~~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
.. .|.+++|+|+|++|++|+.||+|+|||+.+++. +.++ .+|... |.+++|+|+| .+
T Consensus 124 ~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~----V~sVawSPdg-La-- 196 (588)
T 2j04_A 124 KGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDW----VTHIVWYEDV-LV-- 196 (588)
T ss_dssp SSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCC----EEEEEEETTE-EE--
T ss_pred CCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccccccc----EEEEEEcCCc-EE--
Confidence 54 599999999999999999999999999998753 4555 334444 7777777666 22
Q ss_pred ccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEE
Q 037120 320 LKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYA 399 (489)
Q Consensus 320 ~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 399 (489)
+++.|+. .++++...+....+.. .+.. .....+..++|+ | .++
T Consensus 197 -------------------------ass~D~t-VrlWd~~~~~~~~~~~---tL~~-----~h~~~V~svaFs--g-~~L 239 (588)
T 2j04_A 197 -------------------------AALSNNS-VFSMTVSASSHQPVSR---MIQN-----ASRRKITDLKIV--D-YKV 239 (588)
T ss_dssp -------------------------EEETTCC-EEEECCCSSSSCCCEE---EEEC-----CCSSCCCCEEEE--T-TEE
T ss_pred -------------------------EEeCCCe-EEEEECCCCcccccee---eecc-----cccCcEEEEEEE--C-CEE
Confidence 2222221 1233333222100000 0000 001223456777 3 466
Q ss_pred EeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEe--eCCCCeEEeccCcceeEEEec
Q 037120 400 VGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVT--HPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 400 ~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~--~p~~~~i~sgs~dg~i~v~~~ 477 (489)
++++ |+.|++||+..+ +...... +|.+.|.+++| +|++..|+++++||. +||..
T Consensus 240 ASa~-~~tIkLWd~~~~----------~~~~~~~------------gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~ 295 (588)
T 2j04_A 240 VLTC-PGYVHKIDLKNY----------SISSLKT------------GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLE 295 (588)
T ss_dssp EEEC-SSEEEEEETTTT----------EEEEEEC------------SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEES
T ss_pred EEEe-CCeEEEEECCCC----------eEEEEEc------------CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEee
Confidence 6665 699999999987 4433333 79999999999 999999999999999 88875
Q ss_pred c
Q 037120 478 K 478 (489)
Q Consensus 478 ~ 478 (489)
.
T Consensus 296 d 296 (588)
T 2j04_A 296 D 296 (588)
T ss_dssp S
T ss_pred c
Confidence 4
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-28 Score=231.06 Aligned_cols=237 Identities=11% Similarity=0.085 Sum_probs=171.6
Q ss_pred EECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEE
Q 037120 103 DFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVS 182 (489)
Q Consensus 103 ~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~ 182 (489)
.+.+++.+|++|+.||.|+|||+.+.+.... +. ... |.++.|+|. +++++.| ++|+
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~--------~~--------~~~---v~~~~~~~~----~~s~s~D-~~i~ 98 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITT--------IT--------TPN---PRTGGEHPA----IISRGPC-NRLL 98 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSSCEEE--------EE--------EEC---CCTTCCCCS----EEEECST-TEEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCcEEEE--------Ee--------cCC---ceeeeeCCc----eEEecCC-CeEE
Confidence 3557889999999999999999988544331 11 112 666888887 7888888 9999
Q ss_pred EEEeccCC----CCCceeeeeceeeeeecCCcccCeeEEEEec--CCCcEEEEEeCCCcEEEEECCCCCcCceeec-cCC
Q 037120 183 IYDIGYIS----DEPVEVLKTRRSVTVVGSDVQKGLSDLAFSA--VNTSRLIASDTHGVVNIWDRRVGVLPSLELS-TGS 255 (489)
Q Consensus 183 vwd~~~~~----~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~h 255 (489)
+|+..... ......+... ..+|...|.+++|+| ++. +|++++.||+|++||+++++ ++... ..|
T Consensus 99 ~w~~~~~~~~~~~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~--~~~~~~~~~ 169 (343)
T 3lrv_A 99 LLYPGNQITILDSKTNKVLREI------EVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDS--QYIVHSAKS 169 (343)
T ss_dssp EEETTTEEEEEETTTCCEEEEE------ECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSC--EEEEECCCS
T ss_pred EEEccCceEEeecCCcceeEEe------ecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCc--EEEEEecCC
Confidence 99884210 0011111111 146778999999999 898 99999999999999999877 44333 355
Q ss_pred CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCccc-ceeec-CCccCCCCeeEEEeCCCCcceeeccccceeeccceeE
Q 037120 256 HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTS-APFHN-HKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHS 333 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~-~~~~~-~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~ 333 (489)
...|.+++|+|++.++++|+.||.|++||+++++.+ ..+.. |... |++++|+|+
T Consensus 170 ~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~----v~~l~fs~~-------------------- 225 (343)
T 3lrv_A 170 DVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAK----IKEVKFADN-------------------- 225 (343)
T ss_dssp SCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSC----EEEEEECTT--------------------
T ss_pred CCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCC----EEEEEEeCC--------------------
Confidence 668999999999999999999999999999998876 67776 6655 766666554
Q ss_pred EEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEec
Q 037120 334 IDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDF 413 (489)
Q Consensus 334 ~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~ 413 (489)
+.++++|+ |+.|++||+
T Consensus 226 --------------------------------------------------------------g~~l~s~~-~~~v~iwd~ 242 (343)
T 3lrv_A 226 --------------------------------------------------------------GYWMVVEC-DQTVVCFDL 242 (343)
T ss_dssp --------------------------------------------------------------SSEEEEEE-SSBEEEEET
T ss_pred --------------------------------------------------------------CCEEEEEe-CCeEEEEEc
Confidence 33455666 449999999
Q ss_pred cCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCce--EEEEeeCCCCeEEeccC-cceeEEEecc
Q 037120 414 FPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGV--TACVTHPLNNTIVAGTK-NSSLLVVSQK 478 (489)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V--~~va~~p~~~~i~sgs~-dg~i~v~~~~ 478 (489)
.+. +.+..+. .+..|...+ .+++|+|++.+|++|+. |+.+.||.-+
T Consensus 243 ~~~----------~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~ 291 (343)
T 3lrv_A 243 RKD----------VGTLAYP---------TYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFD 291 (343)
T ss_dssp TSS----------TTCBSSC---------CCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCC----------Ccceeec---------ccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEc
Confidence 887 4443333 000233334 46999999999999988 9999999653
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-27 Score=231.60 Aligned_cols=324 Identities=13% Similarity=0.109 Sum_probs=199.4
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcc---cccCCCCCC--------------CCCcc----------------
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLY---YQCNGTLPG--------------VGLKE---------------- 143 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~---~~~~~~~~~--------------~g~~~---------------- 143 (489)
..+.+++|+++|++|+++ .++.|++||+.+++ ....-.... .....
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 358899999999976665 57899999988765 221100000 00000
Q ss_pred ----------cccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccC
Q 037120 144 ----------DQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKG 213 (489)
Q Consensus 144 ----------~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 213 (489)
+......|... |.+++|+|++..++++++.| |+|++||+..........+.. ..|...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~---v~~~~~s~d~~~l~~~~~~d-g~v~iwd~~~~~~~~~~~~~~--------~~~~~~ 151 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSY---IRNLRLTSDESRLIACADSD-KSLLVFDVDKTSKNVLKLRKR--------FCFSKR 151 (450)
T ss_dssp ----------------CCCCC---EEEEEECTTSSEEEEEEGGG-TEEEEEEECSSSSSCEEEEEE--------EECSSC
T ss_pred ccccCccccCCCCCCCccCCc---eEEEEEcCCCCEEEEEECCC-CeEEEEECcCCCCceeeeeec--------ccCCCC
Confidence 00001123333 99999999998556888888 999999995211121111110 246789
Q ss_pred eeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC--ceeeccCCCCceeEEEEeec---CCEEEEEeCCCeEEEEEcCCC
Q 037120 214 LSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP--SLELSTGSHGTLNSIQLHAE---NQIIFAAGKHGSIYLWDLRGG 288 (489)
Q Consensus 214 v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~h~~~v~~~~~~p~---~~~l~~~~~dg~i~lwd~~~~ 288 (489)
|++++|+|++. +|++++.||.|++||+.+++.. +...+.+|...|++++|+|+ +++|++++.|+.|++||++++
T Consensus 152 v~~~~~sp~~~-~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~ 230 (450)
T 2vdu_B 152 PNAISIAEDDT-TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC 230 (450)
T ss_dssp EEEEEECTTSS-EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT
T ss_pred ceEEEEcCCCC-EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC
Confidence 99999999999 9999999999999999887532 23356689999999999999 999999999999999999998
Q ss_pred cccce-eecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeecc-ceeee
Q 037120 289 RTSAP-FHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNS-RVSHV 366 (489)
Q Consensus 289 ~~~~~-~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~-~~~~~ 366 (489)
+.+.. +.+|... |++++|+ ++.++++..... .+..+....+ ..+..+.. +....
T Consensus 231 ~~~~~~~~~h~~~----v~~~~~s-d~~~l~s~~~d~-----------------~v~vwd~~~~--~~~~~~~~~~~~~~ 286 (450)
T 2vdu_B 231 FIVDKWLFGHKHF----VSSICCG-KDYLLLSAGGDD-----------------KIFAWDWKTG--KNLSTFDYNSLIKP 286 (450)
T ss_dssp TCEEEECCCCSSC----EEEEEEC-STTEEEEEESSS-----------------EEEEEETTTC--CEEEEEECHHHHGG
T ss_pred ceeeeeecCCCCc----eEEEEEC-CCCEEEEEeCCC-----------------eEEEEECCCC--cEeeeecchhhhhh
Confidence 88776 4577766 8999888 877776432111 1111111111 01111110 00000
Q ss_pred cCC-----CCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEec--cCCCCCCeeeccCcccchhhHhhhhc
Q 037120 367 HCP-----PPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDF--FPGSSSPSHVDYNEDIESLSERTKLK 439 (489)
Q Consensus 367 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (489)
.+. +..+.... .......+..+.|.|++..+++++..|+.|+|||+ ..+. . -+.+..+.
T Consensus 287 ~~~~~~~~~~~~~~~~-~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~--~-----l~~~~~~~------ 352 (450)
T 2vdu_B 287 YLNDQHLAPPRFQNEN-NDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKG--D-----LALKQIIT------ 352 (450)
T ss_dssp GCCTTSBC-----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTT--C-----EEEEEEEE------
T ss_pred hhhhcccccccccccc-cccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCC--c-----eeeccEec------
Confidence 000 00000000 00111234557888877766666658999999999 3320 0 02223334
Q ss_pred ccCCcccCCCceEEEEeeCCCCeEEeccC------cceeEEEeccc
Q 037120 440 KENRFVPLSEGVTACVTHPLNNTIVAGTK------NSSLLVVSQKQ 479 (489)
Q Consensus 440 ~~~~~~~h~~~V~~va~~p~~~~i~sgs~------dg~i~v~~~~~ 479 (489)
+| +.|.+++|+|++-++++++. +..|.||..+.
T Consensus 353 ------~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 353 ------FP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp ------CS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred ------cC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 56 88999999995545554444 44578876443
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-28 Score=228.65 Aligned_cols=227 Identities=14% Similarity=0.139 Sum_probs=166.5
Q ss_pred ccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecC--CCcE
Q 037120 149 LLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAV--NTSR 226 (489)
Q Consensus 149 ~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~ 226 (489)
.+|... |++++|+|++. +|++++.| ++|+|||+.... ......+.+|...|++++|++. +. +
T Consensus 10 ~~H~~~---V~~v~~s~~g~-~lasgs~D-~~v~lwd~~~~~----------~~~~~~l~gH~~~V~~v~~~~~~~~~-~ 73 (316)
T 3bg1_A 10 TSHEDM---IHDAQMDYYGT-RLATCSSD-RSVKIFDVRNGG----------QILIADLRGHEGPVWQVAWAHPMYGN-I 73 (316)
T ss_dssp ----CC---EEEEEECGGGC-EEEEEETT-TEEEEEEEETTE----------EEEEEEEECCSSCEEEEEECCGGGSS-C
T ss_pred ccccCe---EEEeeEcCCCC-EEEEEeCC-CeEEEEEecCCC----------cEEEEEEcCCCccEEEEEeCCCCCCC-E
Confidence 456666 99999999986 88888888 999999994321 0122334789999999999763 66 9
Q ss_pred EEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeec--CCEEEEEeCCCeEEEEEcCCCcc---cceeecCCccC
Q 037120 227 LIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAE--NQIIFAAGKHGSIYLWDLRGGRT---SAPFHNHKEVC 301 (489)
Q Consensus 227 l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~l~~~~~dg~i~lwd~~~~~~---~~~~~~~~~~~ 301 (489)
|++|+.|++|++||+++++......+.+|...|++++|+|+ +.+|++++.||+|++||++.+.. ...+.+|...
T Consensus 74 l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~- 152 (316)
T 3bg1_A 74 LASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIG- 152 (316)
T ss_dssp EEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSC-
T ss_pred EEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCC-
Confidence 99999999999999998653345556789999999999998 78999999999999999987632 3445566655
Q ss_pred CCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccc
Q 037120 302 HLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSA 381 (489)
Q Consensus 302 ~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (489)
|.+++|+|+...- . ++....+ ..
T Consensus 153 ---v~~~~~~~~~~~~-~-----------------------------------~~~~~~~----------~~-------- 175 (316)
T 3bg1_A 153 ---CNAVSWAPAVVPG-S-----------------------------------LIDHPSG----------QK-------- 175 (316)
T ss_dssp ---BCCCEECCCCCC------------------------------------------CCS----------CC--------
T ss_pred ---cceEEEccccCCc-c-----------------------------------ccccccc----------cC--------
Confidence 7778877764210 0 0000000 00
Q ss_pred cccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCC-
Q 037120 382 DQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLN- 460 (489)
Q Consensus 382 ~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~- 460 (489)
+..+.++++|+.|+.|+|||+..... .+.+..+. +|.+.|.+++|+|++
T Consensus 176 -----------~~~~~~l~sgs~D~~v~lWd~~~~~~-------~~~~~~l~------------~h~~~V~~v~~sp~~~ 225 (316)
T 3bg1_A 176 -----------PNYIKRFASGGCDNLIKLWKEEEDGQ-------WKEEQKLE------------AHSDWVRDVAWAPSIG 225 (316)
T ss_dssp -----------CCCCCBEECCBTTSBCCEEEECTTSC-------EEEEECCB------------CCSSCEEEEECCCCSS
T ss_pred -----------ccccceEEEecCCCeEEEEEeCCCCc-------cceeeecc------------cCCCceEEEEecCCCC
Confidence 01156899999999999999964400 01233455 899999999999987
Q ss_pred ---CeEEeccCcceeEEEeccc
Q 037120 461 ---NTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 461 ---~~i~sgs~dg~i~v~~~~~ 479 (489)
..||+|+.||+|+||..+.
T Consensus 226 ~~~~~las~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 226 LPTSTIASCSQDGRVFIWTCDD 247 (316)
T ss_dssp CSCCEEEEEETTCEEEEEECSS
T ss_pred CCCceEEEEcCCCeEEEEEccC
Confidence 7899999999999997554
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=230.24 Aligned_cols=182 Identities=16% Similarity=0.135 Sum_probs=140.0
Q ss_pred CCceeEEEECCCCcEEEEEe--cCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 96 KPGISALDFDCKGIYLVSAT--RSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~--~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
...+++++|||||++||+++ .|++|+|||+.+...... ..|... |.+|+|+|++. ++++
T Consensus 133 ~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~---------------~~~~~~---V~~v~fspdg~-~l~s 193 (365)
T 4h5i_A 133 DDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE---------------IETRGE---VKDLHFSTDGK-VVAY 193 (365)
T ss_dssp TCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE---------------EECSSC---CCEEEECTTSS-EEEE
T ss_pred ccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE---------------eCCCCc---eEEEEEccCCc-eEEe
Confidence 34589999999999987654 689999999998544431 124444 88999999986 7778
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCC----cEEEEECCCCCcCc-
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG----VVNIWDRRVGVLPS- 248 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg----~i~iwd~~~~~~~~- 248 (489)
++. +.+.+|+...+. ... .....+|...|.+++|+|++. .+++++.|+ .+++||+.......
T Consensus 194 ~s~--~~~~~~~~~~~~----~~~------~~~~~~~~~~v~~v~fspdg~-~l~~~s~d~~~~~~i~~~~~~~~~~~~~ 260 (365)
T 4h5i_A 194 ITG--SSLEVISTVTGS----CIA------RKTDFDKNWSLSKINFIADDT-VLIAASLKKGKGIVLTKISIKSGNTSVL 260 (365)
T ss_dssp ECS--SCEEEEETTTCC----EEE------EECCCCTTEEEEEEEEEETTE-EEEEEEESSSCCEEEEEEEEETTEEEEE
T ss_pred ccc--eeEEEEEeccCc----cee------eeecCCCCCCEEEEEEcCCCC-EEEEEecCCcceeEEeecccccceecce
Confidence 873 567777763221 111 112367888999999999999 899998777 68889987754322
Q ss_pred -eeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCccccee-ecCCccCCCCeeEEEeCCC
Q 037120 249 -LELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPF-HNHKEVCHLPLTSLKLASM 313 (489)
Q Consensus 249 -~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~-~~~~~~~~~~v~~l~~~~~ 313 (489)
...+.+|...|++++|+|+|++|++|+.|++|+|||+++++++..+ .+|... |++|+|+||
T Consensus 261 ~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~----V~~v~fSpd 323 (365)
T 4h5i_A 261 RSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFA----ITEVTISPD 323 (365)
T ss_dssp EEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSC----EEEEEECTT
T ss_pred eeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCC----EEEEEECCC
Confidence 2345589999999999999999999999999999999999988775 678866 888777765
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-26 Score=226.15 Aligned_cols=184 Identities=16% Similarity=0.238 Sum_probs=147.2
Q ss_pred CCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
+...|.+++|+|+|++|++|+.||.|+|||+.+..... .+.+|... |.+++|++ ..++++
T Consensus 133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--------------~~~~~~~~---v~~~~~~~---~~l~~~ 192 (401)
T 4aez_A 133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLR--------------TMAGHQAR---VGCLSWNR---HVLSSG 192 (401)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE--------------EECCCSSC---EEEEEEET---TEEEEE
T ss_pred CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEE--------------EecCCCCc---eEEEEECC---CEEEEE
Confidence 45669999999999999999999999999998744333 12345555 99999964 388888
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccC
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 254 (489)
+.| |.|++||++... . ....+.+|...|.+++|+|++. +|++++.|+.|++||+++++ ....+..
T Consensus 193 ~~d-g~i~i~d~~~~~----~-------~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v~iwd~~~~~--~~~~~~~ 257 (401)
T 4aez_A 193 SRS-GAIHHHDVRIAN----H-------QIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNVVQIWDARSSI--PKFTKTN 257 (401)
T ss_dssp ETT-SEEEEEETTSSS----C-------EEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTCSS--EEEEECC
T ss_pred cCC-CCEEEEecccCc----c-------eeeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeEEEccCCCCC--ccEEecC
Confidence 888 999999995321 1 1122367999999999999998 99999999999999999866 5656678
Q ss_pred CCCceeEEEEeecCCEEEEEe---CCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCccee
Q 037120 255 SHGTLNSIQLHAENQIIFAAG---KHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~---~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
|...|.+++|+|++..+++.+ .|+.|++||+++++.+..+.. ... |.+++|+|++..++
T Consensus 258 ~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~-~~~----v~~~~~s~~~~~l~ 319 (401)
T 4aez_A 258 HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA-GSQ----VTSLIWSPHSKEIM 319 (401)
T ss_dssp CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEEC-SSC----EEEEEECSSSSEEE
T ss_pred CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeC-CCc----EEEEEECCCCCeEE
Confidence 999999999999876555543 599999999999888777753 344 88888888877665
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.6e-27 Score=225.12 Aligned_cols=266 Identities=12% Similarity=0.081 Sum_probs=172.8
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
...+...|++++|+|||++||+|+.+| ++|||++....... .+... +..++|.+.+..++
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~----------------~~~~~---~~~~~~~~~~~~~~ 74 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS----------------QEMRH---LSKVRMLHRTNYVA 74 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE----------------EECSC---CCEEEECTTSSEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee----------------eecCC---eEEEEEcCCCCEEE
Confidence 355677899999999999999999776 78999887433221 11112 67788888876565
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCC----------------------------
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVN---------------------------- 223 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---------------------------- 223 (489)
++++.| ++|++||+..+ ..+... .|...|.+++|+++.
T Consensus 75 ~~~~~d-~~v~iWd~~~~-----~~~~~~--------~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~ 140 (355)
T 3vu4_A 75 FVTGVK-EVVHIWDDVKK-----QDVSRI--------KVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFG 140 (355)
T ss_dssp EECSST-TEEEEEETTTT-----EEEEEE--------ECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEE
T ss_pred EEECCc-cEEEEEECCCC-----cEEEEE--------ECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCC
Confidence 677766 89999998433 111111 123355555554421
Q ss_pred -------CcEEEE--EeCCCcEEEEECCCCC--------------cCceeeccCCCCceeEEEEeecCCEEEEEeCCCe-
Q 037120 224 -------TSRLIA--SDTHGVVNIWDRRVGV--------------LPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGS- 279 (489)
Q Consensus 224 -------~~~l~s--~s~dg~i~iwd~~~~~--------------~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~- 279 (489)
. .++. |+.||.|++||+++++ .+++..+.+|...|++++|+|++++|++++.||+
T Consensus 141 ~~~~~s~~-~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~ 219 (355)
T 3vu4_A 141 GVCEFSNG-LLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTI 219 (355)
T ss_dssp EEEEEETT-EEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSE
T ss_pred ceEEEEcc-EEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCE
Confidence 2 4444 5789999999998754 1115567799999999999999999999999998
Q ss_pred EEEEEcCCCcccceee-c-CCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEE
Q 037120 280 IYLWDLRGGRTSAPFH-N-HKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLD 357 (489)
Q Consensus 280 i~lwd~~~~~~~~~~~-~-~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~ 357 (489)
|++||+++++++..+. + |... |.+++|+|+
T Consensus 220 v~iwd~~~~~~~~~~~~g~h~~~----v~~~~~s~~-------------------------------------------- 251 (355)
T 3vu4_A 220 IRVFKTEDGVLVREFRRGLDRAD----VVDMKWSTD-------------------------------------------- 251 (355)
T ss_dssp EEEEETTTCCEEEEEECTTCCSC----EEEEEECTT--------------------------------------------
T ss_pred EEEEECCCCcEEEEEEcCCCCCc----EEEEEECCC--------------------------------------------
Confidence 9999999999888887 4 6655 766666654
Q ss_pred eeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhh
Q 037120 358 VYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTK 437 (489)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (489)
+.++++|+.|++|+|||+......+.+.-......... ...
T Consensus 252 --------------------------------------~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~-~~~ 292 (355)
T 3vu4_A 252 --------------------------------------GSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYF-QSE 292 (355)
T ss_dssp --------------------------------------SCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCC-CCS
T ss_pred --------------------------------------CCEEEEEECCCEEEEEEccCCCCcccccccceeecccc-ccc
Confidence 33566778899999999876521111000000000000 000
Q ss_pred hcc--cCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 438 LKK--ENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 438 ~~~--~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
+.. .....+.......++|+|++..|++++.||.+.+|....
T Consensus 293 ~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~ 336 (355)
T 3vu4_A 293 WSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF 336 (355)
T ss_dssp SCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred cceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence 000 000012233457799999999999999999999986443
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-27 Score=228.22 Aligned_cols=260 Identities=12% Similarity=0.091 Sum_probs=182.2
Q ss_pred cCCCceeEEEECC-CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 94 FGKPGISALDFDC-KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 94 ~~~~~V~~~~fs~-~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
.+...|.+++|+| ++.+|++|+.||.|++||+....... +..|......|.+++|+|++. .|+
T Consensus 116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---------------~~~~~~~~~~v~~~~~~~~~~-~l~ 179 (383)
T 3ei3_B 116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQV---------------FAKTDSWDYWYCCVDVSVSRQ-MLA 179 (383)
T ss_dssp STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEE---------------EECCCCSSCCEEEEEEETTTT-EEE
T ss_pred CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEE---------------EeccCCCCCCeEEEEECCCCC-EEE
Confidence 4667799999999 78999999999999999998622211 111221122299999999986 888
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC--cee
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP--SLE 250 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~ 250 (489)
+++.| +.|++||++. . ....+.+|...|.+++|+|+++.+|++++.|+.|++||+++.+.. ++.
T Consensus 180 ~~~~d-~~i~i~d~~~------~-------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 245 (383)
T 3ei3_B 180 TGDST-GRLLLLGLDG------H-------EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIA 245 (383)
T ss_dssp EEETT-SEEEEEETTS------C-------EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEE
T ss_pred EECCC-CCEEEEECCC------C-------EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEE
Confidence 88888 9999999921 1 122236799999999999999878999999999999999984321 444
Q ss_pred eccCCCCceeEEEEee-cCCEEEEEeCCCeEEEEEcCCCcccceeecCCccC---CCCeeEEEeCCCCcceeecccccee
Q 037120 251 LSTGSHGTLNSIQLHA-ENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVC---HLPLTSLKLASMLEKIGTLKAQSKI 326 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p-~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~---~~~v~~l~~~~~~~~i~~~~~~~~~ 326 (489)
.+ +|...|.+++|+| ++.++++++.|+.|++||+++++.+..+..|.... ..++. +.|+|++..+
T Consensus 246 ~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~--------- 314 (383)
T 3ei3_B 246 EM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK-ATWHPMYDLI--------- 314 (383)
T ss_dssp EE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC-CEECSSSSEE---------
T ss_pred Ee-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceE-EeccCCCCce---------
Confidence 44 7999999999999 99999999999999999999998877777654220 12244 4677765443
Q ss_pred eccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCC
Q 037120 327 VSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDH 406 (489)
Q Consensus 327 ~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~ 406 (489)
.+.++|++.+ +++ .++-..+++..++.......... .. .....++|+|++. ++++|+ |+
T Consensus 315 ------~~~~s~dg~~--s~s-~d~~i~iwd~~~~~~~~~l~~~~---~~-------~~~~~~~~s~~g~-~l~s~s-d~ 373 (383)
T 3ei3_B 315 ------VAGRYPDDQL--LLN-DKRTIDIYDANSGGLVHQLRDPN---AA-------GIISLNKFSPTGD-VLASGM-GF 373 (383)
T ss_dssp ------EEECBCCTTT--CTT-CCCCEEEEETTTCCEEEEECBTT---BC-------SCCCEEEECTTSS-EEEEEE-TT
T ss_pred ------EEEecCCccc--ccC-CCCeEEEEecCCCceeeeecCCC---CC-------ceEEEEEEecCcc-EEEEec-CC
Confidence 3567777766 222 23333455555444333221100 00 1122346777755 556666 99
Q ss_pred cEEEEeccC
Q 037120 407 GIHLLDFFP 415 (489)
Q Consensus 407 ~i~vwd~~~ 415 (489)
.|+|||+.+
T Consensus 374 ~i~iw~~~~ 382 (383)
T 3ei3_B 374 NILIWNRED 382 (383)
T ss_dssp EEEEEECC-
T ss_pred cEEEEecCC
Confidence 999999864
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=227.74 Aligned_cols=247 Identities=13% Similarity=0.154 Sum_probs=176.7
Q ss_pred cCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 94 FGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
.+...|+||+|+|+|++||+|+.||.|+|||+.+.+... . +.+|... |.+++|++. ++++
T Consensus 145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~--------~------~~~h~~~---v~~~s~~~~---~l~s 204 (420)
T 4gga_A 145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR--------N------MTSHSAR---VGSLSWNSY---ILSS 204 (420)
T ss_dssp STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE--------E------ECCCSSC---EEEEEEETT---EEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEE--------E------EeCCCCc---eEEEeeCCC---EEEE
Confidence 344569999999999999999999999999999855544 1 2445555 888988753 8889
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC--ceee
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP--SLEL 251 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~ 251 (489)
++.| +.+++||..... .....+.+|...+..+.|+|++. ++++++.|+.|++||..+++.. .+..
T Consensus 205 gs~d-~~i~~~d~~~~~-----------~~~~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~v~i~~~~~~~~~~~~~~~ 271 (420)
T 4gga_A 205 GSRS-GHIHHHDVRVAE-----------HHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQT 271 (420)
T ss_dssp EETT-SEEEEEETTSSS-----------CEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCCSSCSCCSEE
T ss_pred EeCC-CceeEeeecccc-----------eeeEEecccccceeeeeecCCCC-eeeeeeccccceEEeeccccccceeeee
Confidence 9988 999999984321 11223478999999999999999 9999999999999999886533 3445
Q ss_pred ccCCCCceeEEEEeecCCEEE-EE--eCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeec
Q 037120 252 STGSHGTLNSIQLHAENQIIF-AA--GKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVS 328 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~-~~--~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~ 328 (489)
...|...|.+++|+|++..++ ++ +.|++|++||+++++++..+..+. . +.++.|++++..+....
T Consensus 272 ~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~-~----v~~~~~~~~~~~lv~~s------- 339 (420)
T 4gga_A 272 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-Q----VCSILWSPHYKELISGH------- 339 (420)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS-C----EEEEEEETTTTEEEEEE-------
T ss_pred ecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc-c----eeeeeecCCCCeEEEEE-------
Confidence 668999999999999776554 33 349999999999998877776543 3 77788887776554211
Q ss_pred cceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcE
Q 037120 329 QEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGI 408 (489)
Q Consensus 329 ~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i 408 (489)
-..++ .+..+..... ..+..+.+|...+.+ ++|+|+ +.+|++|+.|++|
T Consensus 340 -------g~~d~-~I~iwd~~~~--~~v~~l~gH~~~V~~--------------------l~~spd-g~~l~S~s~D~tv 388 (420)
T 4gga_A 340 -------GFAQN-QLVIWKYPTM--AKVAELKGHTSRVLS--------------------LTMSPD-GATVASAAADETL 388 (420)
T ss_dssp -------CTTTC-CEEEEETTTC--CEEEEECCCSSCEEE--------------------EEECTT-SSCEEEEETTTEE
T ss_pred -------ecCCC-EEEEEECCCC--cEEEEEcCCCCCEEE--------------------EEEcCC-CCEEEEEecCCeE
Confidence 00111 1111111110 123334444444333 345555 5678899999999
Q ss_pred EEEeccCC
Q 037120 409 HLLDFFPG 416 (489)
Q Consensus 409 ~vwd~~~~ 416 (489)
+|||+...
T Consensus 389 riWdv~~~ 396 (420)
T 4gga_A 389 RLWRCFEL 396 (420)
T ss_dssp EEECCSCS
T ss_pred EEEECCCC
Confidence 99999765
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-26 Score=218.26 Aligned_cols=251 Identities=12% Similarity=0.122 Sum_probs=178.9
Q ss_pred cccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEE
Q 037120 148 HLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRL 227 (489)
Q Consensus 148 ~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 227 (489)
+.+|... |++|+|+|++..+|++|+.| ++|+|||+....... ......+.+|...|.+++|+|++. +|
T Consensus 34 L~GH~~~---V~~v~~sp~~~~~l~S~s~D-~~i~vWd~~~~~~~~-------~~~~~~l~~h~~~V~~~~~s~dg~-~l 101 (340)
T 4aow_A 34 LKGHNGW---VTQIATTPQFPDMILSASRD-KTIIMWKLTRDETNY-------GIPQRALRGHSHFVSDVVISSDGQ-FA 101 (340)
T ss_dssp ECCCSSC---EEEEEECTTCTTEEEEEETT-SCEEEEEECCSSSCS-------EEEEEEECCCSSCEEEEEECTTSS-EE
T ss_pred ECCccCC---EEEEEEeCCCCCEEEEEcCC-CeEEEEECCCCCccc-------ceeeEEEeCCCCCEEEEEECCCCC-EE
Confidence 4678877 99999999976799999998 999999996443221 112233488999999999999999 99
Q ss_pred EEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-cceeecCCccCCCCee
Q 037120 228 IASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-SAPFHNHKEVCHLPLT 306 (489)
Q Consensus 228 ~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-~~~~~~~~~~~~~~v~ 306 (489)
++++.|+.|++|+..... .......+...+..+.+++++.++++++.|+.+++||+..... ...+.+|... +.
T Consensus 102 ~s~~~d~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~----v~ 175 (340)
T 4aow_A 102 LSGSWDGTLRLWDLTTGT--TTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEW----VS 175 (340)
T ss_dssp EEEETTSEEEEEETTTTE--EEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSC----EE
T ss_pred EEEcccccceEEeecccc--eeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCc----cc
Confidence 999999999999998765 4444557788899999999999999999999999999987554 3344566655 88
Q ss_pred EEEeCCCCcce--eeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCcccccc
Q 037120 307 SLKLASMLEKI--GTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQL 384 (489)
Q Consensus 307 ~l~~~~~~~~i--~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (489)
.++|++++... ++.. .++ .+........ .....+.+|...+
T Consensus 176 ~~~~~~~~~~~~~~s~~----------------~d~-~i~i~d~~~~--~~~~~~~~h~~~v------------------ 218 (340)
T 4aow_A 176 CVRFSPNSSNPIIVSCG----------------WDK-LVKVWNLANC--KLKTNHIGHTGYL------------------ 218 (340)
T ss_dssp EEEECSCSSSCEEEEEE----------------TTS-CEEEEETTTT--EEEEEECCCSSCE------------------
T ss_pred ceEEccCCCCcEEEEEc----------------CCC-EEEEEECCCC--ceeeEecCCCCcE------------------
Confidence 88887765321 1100 011 0111111100 1222223332222
Q ss_pred CCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEE
Q 037120 385 HLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIV 464 (489)
Q Consensus 385 ~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~ 464 (489)
..++|+|+ +.++++|+.|+.|++||+.+. +.+..+. +...|.+++|+|++. ++
T Consensus 219 --~~~~~s~~-~~~l~s~s~Dg~i~iwd~~~~----------~~~~~~~-------------~~~~v~~~~~~~~~~-~~ 271 (340)
T 4aow_A 219 --NTVTVSPD-GSLCASGGKDGQAMLWDLNEG----------KHLYTLD-------------GGDIINALCFSPNRY-WL 271 (340)
T ss_dssp --EEEEECTT-SSEEEEEETTCEEEEEETTTT----------EEEEEEE-------------CSSCEEEEEECSSSS-EE
T ss_pred --EEEEECCC-CCEEEEEeCCCeEEEEEeccC----------ceeeeec-------------CCceEEeeecCCCCc-ee
Confidence 22345554 567888999999999999988 6665554 557899999999875 55
Q ss_pred eccCcceeEEEecccc
Q 037120 465 AGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 465 sgs~dg~i~v~~~~~~ 480 (489)
+++.|+.|.||..+..
T Consensus 272 ~~~~d~~i~iwd~~~~ 287 (340)
T 4aow_A 272 CAATGPSIKIWDLEGK 287 (340)
T ss_dssp EEEETTEEEEEETTTT
T ss_pred eccCCCEEEEEECCCC
Confidence 6677999999976543
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=232.86 Aligned_cols=193 Identities=9% Similarity=0.045 Sum_probs=139.8
Q ss_pred CCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCC--CCCceeEEEeeCCCCCEEEE
Q 037120 96 KPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIP--LPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~--~~~~V~~v~~~~~~~~~l~s 173 (489)
...|.+++|||+|.+||+++.||.|+|||.+. ... .. . |.. ....|.+++|+|+++ .|++
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~--------~l------~-~~~~~~~~sv~svafSPDG~-~LAs 146 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLT--------NL------D-SKGNLSSRTYHCFEWNPIES-SIVV 146 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEE--------EC------C-CSSCSTTTCEEEEEECSSSS-CEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eee--------ec------c-CCCccccccEEEEEEcCCCC-EEEE
Confidence 56699999999999999999999999999654 111 01 1 111 012399999999986 8888
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-ceeec
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-SLELS 252 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~ 252 (489)
|+.| |+|+|||+..+.... ..+-....+.....+|...|.+++|+|++ +++++.|++|++||+..+... ..+.+
T Consensus 147 gs~D-GtVkIWd~~~~~l~~-~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL 221 (588)
T 2j04_A 147 GNED-GELQFFSIRKNSENT-PEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMI 221 (588)
T ss_dssp EETT-SEEEEEECCCCTTTC-CCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEE
T ss_pred EcCC-CEEEEEECCCCcccc-ccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeee
Confidence 8888 999999995432100 00000111111126788999999999988 788889999999999876522 12334
Q ss_pred -cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEe--CCCCccee
Q 037120 253 -TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKL--ASMLEKIG 318 (489)
Q Consensus 253 -~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~--~~~~~~i~ 318 (489)
.+|...|.+++|+ |+.+++++ +++|++||+.+++......+|... |.+++| +|++..++
T Consensus 222 ~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~----V~~va~~~s~d~~~La 283 (588)
T 2j04_A 222 QNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLEN----FHIIPLNHEKESTILL 283 (588)
T ss_dssp ECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSC----CCEEEETTCSSCEEEE
T ss_pred cccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCce----EEEEEeeeCCCCCEEE
Confidence 4788999999999 68888887 699999999987753333367766 888888 77776554
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.9e-26 Score=217.10 Aligned_cols=200 Identities=13% Similarity=0.097 Sum_probs=153.5
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..+...|.+++|+|++++|++++.||.|++||+.+...... . .|... |.+++|+|++..++
T Consensus 70 ~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------~-------~~~~~---v~~~~~~~~~~~l~ 131 (369)
T 3zwl_B 70 LDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVAT--------W-------KSPVP---VKRVEFSPCGNYFL 131 (369)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEE--------E-------ECSSC---EEEEEECTTSSEEE
T ss_pred hhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE--------e-------ecCCC---eEEEEEccCCCEEE
Confidence 455677899999999999999999999999999988544431 1 13333 99999999987444
Q ss_pred EEEecCC-----CEEEEEEeccCCCCCceeeeeceeeeeecCCccc--CeeEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 037120 172 ACASTRS-----NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQK--GLSDLAFSAVNTSRLIASDTHGVVNIWDRRVG 244 (489)
Q Consensus 172 ~s~~~d~-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 244 (489)
+++. + +.|++||+.......... .........+..|.. .+.+++|+|++. .|++++.||.|++||+++.
T Consensus 132 ~~~~--~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~ 207 (369)
T 3zwl_B 132 AILD--NVMKNPGSINIYEIERDSATHELT-KVSEEPIHKIITHEGLDAATVAGWSTKGK-YIIAGHKDGKISKYDVSNN 207 (369)
T ss_dssp EEEC--CBTTBCCEEEEEEEEECTTTCCEE-EECSSCSEEEECCTTCCCEEEEEECGGGC-EEEEEETTSEEEEEETTTT
T ss_pred EecC--CccCCCCEEEEEEecCCccceeec-ccccceeeeccCCcCccceeEEEEcCCCC-EEEEEcCCCEEEEEECCCC
Confidence 4444 4 899999996543221111 111111112244555 999999999999 9999999999999999983
Q ss_pred CcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceee
Q 037120 245 VLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 245 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
.. .+..+..|...|.+++|+|++++|++++.||.|++||+++++.+..+. +... +..++|+|++..++.
T Consensus 208 ~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~----~~~~~~~~~~~~l~~ 276 (369)
T 3zwl_B 208 YE-YVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDCP----LNTAVITPLKEFIIL 276 (369)
T ss_dssp TE-EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSC----EEEEEECSSSSEEEE
T ss_pred cE-eEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCCC----ceeEEecCCCceEEE
Confidence 22 455667899999999999999999999999999999999998877776 4444 899999999887754
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=222.14 Aligned_cols=271 Identities=14% Similarity=0.169 Sum_probs=180.7
Q ss_pred cCCCCCCceeEEEeeCC---CCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecC----
Q 037120 150 LHIPLPQQLDAVRWNLA---NQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAV---- 222 (489)
Q Consensus 150 ~h~~~~~~V~~v~~~~~---~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---- 222 (489)
+|... |.+++|+|+ +...+++++.+ +.|++||+... ..+.....+ ....|...|++++|+|+
T Consensus 16 ~h~~~---v~~i~~~p~~~~~~~~~~~~~~~-~~v~vw~~~~~-----~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~ 84 (366)
T 3k26_A 16 DHNQP---LFGVQFNWHSKEGDPLVFATVGS-NRVTLYECHSQ-----GEIRLLQSY--VDADADENFYTCAWTYDSNTS 84 (366)
T ss_dssp TTCSC---EEEEEECTTCCTTSCEEEEEEET-TEEEEEEECGG-----GCEEEEEEE--ECSCTTCCEEEEEEEECTTTC
T ss_pred CCCCc---eEEEEEecccCCCCceEEEECCC-CEEEEEEcCCC-----cEEEeeeec--cccCCCCcEEEEEeccCCCCC
Confidence 46666 999999984 44456666656 89999999533 222222211 12447789999999999
Q ss_pred CCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEee-cCCEEEEEeCCCeEEEEEcCCCccccee---ecCC
Q 037120 223 NTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHA-ENQIIFAAGKHGSIYLWDLRGGRTSAPF---HNHK 298 (489)
Q Consensus 223 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~~~~~dg~i~lwd~~~~~~~~~~---~~~~ 298 (489)
+. +|++++.||.|++||+.+++ .+..+.+|...|.+++|+| ++.++++++.||.|++||+++++.+..+ ..|.
T Consensus 85 ~~-~l~~~~~dg~i~v~d~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 161 (366)
T 3k26_A 85 HP-LLAVAGSRGIIRIINPITMQ--CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHR 161 (366)
T ss_dssp CE-EEEEEETTCEEEEECTTTCC--EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCS
T ss_pred CC-EEEEecCCCEEEEEEchhce--EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccccc
Confidence 55 89999999999999999876 6667778999999999999 8999999999999999999998887776 5666
Q ss_pred ccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCC
Q 037120 299 EVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSN 378 (489)
Q Consensus 299 ~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (489)
.. |.+++|+|++..+++.. .++. ..+++...+...........+.++..
T Consensus 162 ~~----v~~~~~~~~~~~l~~~~--------------------------~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~ 210 (366)
T 3k26_A 162 DE----VLSADYDLLGEKIMSCG--------------------------MDHS-LKLWRINSKRMMNAIKESYDYNPNKT 210 (366)
T ss_dssp SC----EEEEEECTTSSEEEEEE--------------------------TTSC-EEEEESCSHHHHHHHHHHHTCCGGGC
T ss_pred Cc----eeEEEECCCCCEEEEec--------------------------CCCC-EEEEECCCCccccccceeEEecCCCC
Confidence 66 88888888776664322 1111 11222221111000000000000000
Q ss_pred ----------------ccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeec----cCcccchhhHhhhh
Q 037120 379 ----------------NSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVD----YNEDIESLSERTKL 438 (489)
Q Consensus 379 ----------------~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~----~~~~~~~~~~~~~~ 438 (489)
.......+..+.|. +.++++++.|+.|++||+.+......... ....+..+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~------ 281 (366)
T 3k26_A 211 NRPFISQKIHFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF------ 281 (366)
T ss_dssp SSCCCCEEECCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE------
T ss_pred cccccceeeccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccc------
Confidence 00011223445565 45888999999999999987621100000 00112222
Q ss_pred cccCCcccCCCceEEEEeeCC--CCeEEeccCcceeEEEecccc
Q 037120 439 KKENRFVPLSEGVTACVTHPL--NNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 439 ~~~~~~~~h~~~V~~va~~p~--~~~i~sgs~dg~i~v~~~~~~ 480 (489)
.+|...|++++|+|+ +.+|++|+.||.|.||..+..
T Consensus 282 ------~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~ 319 (366)
T 3k26_A 282 ------DYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVE 319 (366)
T ss_dssp ------ECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSS
T ss_pred ------cccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCC
Confidence 379999999999999 999999999999999987654
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-27 Score=233.79 Aligned_cols=288 Identities=13% Similarity=0.150 Sum_probs=196.7
Q ss_pred cCCCceeEEEECCCCcEEEEEecCCeEEEEeCC---CcccccCCCCCCCCCccccc--ccccCCC-CCCceeEEE--eeC
Q 037120 94 FGKPGISALDFDCKGIYLVSATRSGCLTVHDFE---SLYYQCNGTLPGVGLKEDQS--KHLLHIP-LPQQLDAVR--WNL 165 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~---~~~~~~~~~~~~~g~~~~~~--~~~~h~~-~~~~V~~v~--~~~ 165 (489)
.+...|.+++|+|++++|++|+.||.|+|||++ ....... ...+. .+..+.. ....+.++. +++
T Consensus 109 ~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~--------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 180 (437)
T 3gre_A 109 DCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKF--------LNCECIRKINLKNFGKNEYAVRMRAFVNE 180 (437)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEE--------EEEEEEEEEEGGGGSSCCCEEEEEEEECS
T ss_pred cCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeec--------cccceeEEEEccCcccccCceEEEEEEcC
Confidence 356779999999999999999999999999995 2222110 01010 0011100 112266676 456
Q ss_pred CCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCC--cccCeeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 037120 166 ANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSD--VQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRV 243 (489)
Q Consensus 166 ~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 243 (489)
++. ++++++.| +.|++||++.. ..+. .+.+ |...|++++|+|++. +|++|+.||.|++||+++
T Consensus 181 ~~~-~l~~~~~d-~~i~iwd~~~~-----~~~~-------~~~~~~h~~~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~ 245 (437)
T 3gre_A 181 EKS-LLVALTNL-SRVIIFDIRTL-----ERLQ-------IIENSPRHGAVSSICIDEECC-VLILGTTRGIIDIWDIRF 245 (437)
T ss_dssp SCE-EEEEEETT-SEEEEEETTTC-----CEEE-------EEECCGGGCCEEEEEECTTSC-EEEEEETTSCEEEEETTT
T ss_pred CCC-EEEEEeCC-CeEEEEeCCCC-----eeeE-------EEccCCCCCceEEEEECCCCC-EEEEEcCCCeEEEEEcCC
Confidence 664 88888888 99999999432 1111 1233 888999999999998 999999999999999998
Q ss_pred CCcCceeecc-CCCCceeEEEEee----cCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCccee
Q 037120 244 GVLPSLELST-GSHGTLNSIQLHA----ENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 244 ~~~~~~~~~~-~h~~~v~~~~~~p----~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
++ ++..+. .|...|.+++|+| ++.++++++.||.|++||+++++++..+.+|... +..+.|+|++..+.
T Consensus 246 ~~--~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~ 319 (437)
T 3gre_A 246 NV--LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQ----PSMEHFLPIEKGLE 319 (437)
T ss_dssp TE--EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSC----CCGGGGSCBCSSGG
T ss_pred cc--EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCC----Cccceecccccccc
Confidence 65 555443 7788999996664 6779999999999999999999999999998877 88889999987774
Q ss_pred eccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCC----CCc----------------CC--
Q 037120 319 TLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPP----AWL----------------SD-- 376 (489)
Q Consensus 319 ~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~----~~~----------------~~-- 376 (489)
........+...|.+++|+ ++.++++++.|+. ..++++..+.......... .+. ..
T Consensus 320 ~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (437)
T 3gre_A 320 ELNFCGIRSLNALSTISVS-NDKILLTDEATSS-IVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTST 397 (437)
T ss_dssp GCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTE-EEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC----
T ss_pred cceecccccCCceEEEEEC-CceEEEecCCCCe-EEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccc
Confidence 4333333467789999999 6666666665554 2344444333222111000 000 00
Q ss_pred ---CCccccccCCCcceeecC-CcEEEEeecCCCcEEEEe
Q 037120 377 ---SNNSADQLHLRKPSWLST-NSIYAVGSSSDHGIHLLD 412 (489)
Q Consensus 377 ---~~~~~~~~~~~~~~~~~~-~~~~l~sgs~d~~i~vwd 412 (489)
.......-.+..++|.++ +..++++|+.||.|+||+
T Consensus 398 ~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 398 HSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp ---------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred cccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 000012223445678877 578999999999999995
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=218.89 Aligned_cols=291 Identities=13% Similarity=0.082 Sum_probs=167.6
Q ss_pred cCCCceeEEEECC-CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCC--CE
Q 037120 94 FGKPGISALDFDC-KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQ--DE 170 (489)
Q Consensus 94 ~~~~~V~~~~fs~-~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~--~~ 170 (489)
.+...|.+++|+| ++.+|++|+.||.|++||+.+...... ..+... +.+++|++.+. .+
T Consensus 97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~---------------~~~~~~---~~~~~~~~~~~~~~~ 158 (408)
T 4a11_B 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADV---------------FNFEET---VYSHHMSPVSTKHCL 158 (408)
T ss_dssp CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEE---------------EECSSC---EEEEEECSSCSSCCE
T ss_pred cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCcccee---------------ccCCCc---eeeeEeecCCCCCcE
Confidence 3667799999999 788999999999999999998544431 112233 88899998643 27
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce-
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL- 249 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~- 249 (489)
+++++.| |.|++||+.... . .. .+.+|...|.+++|+|++..+|++++.||.|++||++++.....
T Consensus 159 ~~~~~~~-~~v~~~d~~~~~-----~---~~----~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~ 225 (408)
T 4a11_B 159 VAVGTRG-PKVQLCDLKSGS-----C---SH----ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLIT 225 (408)
T ss_dssp EEEEESS-SSEEEEESSSSC-----C---CE----EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEE
T ss_pred EEEEcCC-CeEEEEeCCCcc-----e---ee----eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCccccc
Confidence 8888887 999999995331 1 11 23678999999999999986699999999999999987642211
Q ss_pred -------------eeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcc
Q 037120 250 -------------ELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEK 316 (489)
Q Consensus 250 -------------~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 316 (489)
.....|...|.+++|+|+++++++++.||.|++||+++++....+..+.... ....+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~------- 296 (408)
T 4a11_B 226 LDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNN--SKKGLK------- 296 (408)
T ss_dssp CCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCC--CSSCCC-------
T ss_pred ccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccccc--ccccce-------
Confidence 1124788999999999999999999999999999999987655444322110 000000
Q ss_pred eeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCc
Q 037120 317 IGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNS 396 (489)
Q Consensus 317 i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (489)
..+ ....+..++....+ +-..+++...+........ . ...+..++|+|++
T Consensus 297 ---------------~~~-~~~~~~~~~~~~~~-~~i~v~d~~~~~~~~~~~~------~------~~~v~~~~~s~~~- 346 (408)
T 4a11_B 297 ---------------FTV-SCGCSSEFVFVPYG-STIAVYTVYSGEQITMLKG------H------YKTVDCCVFQSNF- 346 (408)
T ss_dssp ---------------CEE-CCSSSSCEEEEEET-TEEEEEETTTCCEEEEECC------C------SSCEEEEEEETTT-
T ss_pred ---------------eEE-ecCCCceEEEEecC-CEEEEEECcCCcceeeecc------C------CCeEEEEEEcCCC-
Confidence 000 01111222222222 2222333333322221110 0 0112335666664
Q ss_pred EEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeC-CCCeEEeccCcceeEEE
Q 037120 397 IYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHP-LNNTIVAGTKNSSLLVV 475 (489)
Q Consensus 397 ~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p-~~~~i~sgs~dg~i~v~ 475 (489)
.++++|+.||.|++||+.+. +.+.... .+ -....+.| ......+++.++.+.+|
T Consensus 347 ~~l~s~~~dg~i~iw~~~~~----------~~~~~~~------------~~---~~~~~~~~~~~~~~~~~~~~~~~~~W 401 (408)
T 4a11_B 347 QELYSGSRDCNILAWVPSLY----------EPVPDDD------------ET---TTKSQLNPAFEDAWSSSDEEGGTSAW 401 (408)
T ss_dssp TEEEEEETTSCEEEEEECC-------------------------------------------------------------
T ss_pred CEEEEECCCCeEEEEeCCCC----------CccCCCC------------ce---EeccccccccceeecccCccCceeec
Confidence 56788899999999999988 5444332 11 12223344 33466778889999999
Q ss_pred eccc
Q 037120 476 SQKQ 479 (489)
Q Consensus 476 ~~~~ 479 (489)
+.++
T Consensus 402 ~~~~ 405 (408)
T 4a11_B 402 SHPQ 405 (408)
T ss_dssp ----
T ss_pred CCcc
Confidence 8664
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-26 Score=220.09 Aligned_cols=269 Identities=13% Similarity=0.055 Sum_probs=174.6
Q ss_pred ccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecC----C-
Q 037120 149 LLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAV----N- 223 (489)
Q Consensus 149 ~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~----~- 223 (489)
.+|... |++++|+| .+|++++.| |+|++||+....... ... ....+.+|...|++++|+|+ +
T Consensus 13 ~~h~~~---i~~~~~~~---~~l~s~~~d-g~i~iw~~~~~~~~~--~~~----~~~~~~~h~~~v~~~~~~~~~~~~g~ 79 (397)
T 1sq9_A 13 KAHDAD---IFSVSACN---SFTVSCSGD-GYLKVWDNKLLDNEN--PKD----KSYSHFVHKSGLHHVDVLQAIERDAF 79 (397)
T ss_dssp SCSSSC---EEEEEECS---SEEEEEETT-SEEEEEESBCCTTCC--GGG----GEEEEECCTTCEEEEEEEEEEETTTE
T ss_pred hhhhcC---eEEEEecC---CeEEEEcCC-CEEEEEECCCccccc--CCC----cceEEecCCCcEEEEEEecccccCCc
Confidence 456666 99999998 488888888 999999995443111 111 12223679999999999999 8
Q ss_pred --CcEEEEEeCCCcEEEEECCCCCcC---ceeeccCC-----CCceeEEEEe----ecCCE-EEEEeCCCeEEEEEcCC-
Q 037120 224 --TSRLIASDTHGVVNIWDRRVGVLP---SLELSTGS-----HGTLNSIQLH----AENQI-IFAAGKHGSIYLWDLRG- 287 (489)
Q Consensus 224 --~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~h-----~~~v~~~~~~----p~~~~-l~~~~~dg~i~lwd~~~- 287 (489)
. +|++++.||.|++||+.+++.+ .+..+..| ...|.+++|+ |++++ +++++.||.|++||+++
T Consensus 80 ~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 158 (397)
T 1sq9_A 80 ELC-LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPF 158 (397)
T ss_dssp EEE-EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESS
T ss_pred ccc-EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcc
Confidence 7 9999999999999999987621 15566677 5899999999 99999 99999999999999998
Q ss_pred -----Ccccc-----eeec-------CCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecC
Q 037120 288 -----GRTSA-----PFHN-------HKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDD 350 (489)
Q Consensus 288 -----~~~~~-----~~~~-------~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~ 350 (489)
++.+. .+.+ |... |.+++|+|++ .++. ++.+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~~~~~~~~-~l~~--------------------------~~~d- 206 (397)
T 1sq9_A 159 ADESNSLTLNWSPTLELQGTVESPMTPSQF----ATSVDISERG-LIAT--------------------------GFNN- 206 (397)
T ss_dssp SSHHHHTTTCCCCEEEEEEEECCSSSSCCC----CCEEEECTTS-EEEE--------------------------ECTT-
T ss_pred ccccccceeeccCcceeeeeeccccCCCCC----ceEEEECCCc-eEEE--------------------------EeCC-
Confidence 65555 4432 3333 5666665555 4332 2211
Q ss_pred CceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCC---CcEEEEeccCCCCCCeeeccCc
Q 037120 351 GWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSD---HGIHLLDFFPGSSSPSHVDYNE 427 (489)
Q Consensus 351 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d---~~i~vwd~~~~~~~~~~~~~~~ 427 (489)
+-..+++...+............... ...+..++|+|+ +.++++|+.| +.|++||+.++ +
T Consensus 207 g~i~i~d~~~~~~~~~~~~~~~h~~~------~~~i~~i~~~~~-~~~l~~~~~d~~~g~i~i~d~~~~----------~ 269 (397)
T 1sq9_A 207 GTVQISELSTLRPLYNFESQHSMINN------SNSIRSVKFSPQ-GSLLAIAHDSNSFGCITLYETEFG----------E 269 (397)
T ss_dssp SEEEEEETTTTEEEEEEECCC---CC------CCCEEEEEECSS-TTEEEEEEEETTEEEEEEEETTTC----------C
T ss_pred CcEEEEECCCCceeEEEecccccccc------CCccceEEECCC-CCEEEEEecCCCCceEEEEECCCC----------c
Confidence 11122222222111110000000000 012234566666 4567778889 99999999988 6
Q ss_pred ccchhhHhhhhcc-cCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccc
Q 037120 428 DIESLSERTKLKK-ENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 428 ~~~~~~~~~~~~~-~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
.+..+..+..... ......|...|.+++|+|++.+|++|+.||.|.||..+..
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 323 (397)
T 1sq9_A 270 RIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 323 (397)
T ss_dssp EEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT
T ss_pred ccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 6655550000000 0000119999999999999999999999999999986543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.3e-25 Score=214.87 Aligned_cols=263 Identities=14% Similarity=0.145 Sum_probs=175.4
Q ss_pred cCCCceeEEEECCC---CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEe------e
Q 037120 94 FGKPGISALDFDCK---GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRW------N 164 (489)
Q Consensus 94 ~~~~~V~~~~fs~~---g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~------~ 164 (489)
.+...|.+++|+|+ |.+|++|+.||.|++||+.+... ....+.+|... |.+++| +
T Consensus 63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------------~~~~~~~~~~~---v~~~~~~~~~~~s 126 (357)
T 3i2n_A 63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEM-------------PVYSVKGHKEI---INAIDGIGGLGIG 126 (357)
T ss_dssp EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSS-------------CSEEECCCSSC---EEEEEEESGGGCC
T ss_pred cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCc-------------cEEEEEecccc---eEEEeeccccccC
Confidence 45667999999999 79999999999999999987431 11223456666 888965 5
Q ss_pred CCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEE----EecCCCcEEEEEeCCCcEEEEE
Q 037120 165 LANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLA----FSAVNTSRLIASDTHGVVNIWD 240 (489)
Q Consensus 165 ~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~----~~~~~~~~l~s~s~dg~i~iwd 240 (489)
|++. .|++++.| |.|++||+...... ...+.... ..+...|.+++ |+|++. +|++++.||.|++||
T Consensus 127 ~~~~-~l~~~~~d-~~i~vwd~~~~~~~-~~~~~~~~------~~~~~~v~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d 196 (357)
T 3i2n_A 127 EGAP-EIVTGSRD-GTVKVWDPRQKDDP-VANMEPVQ------GENKRDCWTVAFGNAYNQEER-VVCAGYDNGDIKLFD 196 (357)
T ss_dssp -CCC-EEEEEETT-SCEEEECTTSCSSC-SEEECCCT------TSCCCCEEEEEEECCCC-CCC-EEEEEETTSEEEEEE
T ss_pred CCcc-EEEEEeCC-CeEEEEeCCCCCCc-ceeccccC------CCCCCceEEEEEEeccCCCCC-EEEEEccCCeEEEEE
Confidence 6665 78888888 99999999543211 11111100 22244899998 678888 999999999999999
Q ss_pred CCCCCcCceeeccCCCCceeEEEEee---cCCEEEEEeCCCeEEEEEcCCCcccceee-----cCCccCCCCeeEEEeCC
Q 037120 241 RRVGVLPSLELSTGSHGTLNSIQLHA---ENQIIFAAGKHGSIYLWDLRGGRTSAPFH-----NHKEVCHLPLTSLKLAS 312 (489)
Q Consensus 241 ~~~~~~~~~~~~~~h~~~v~~~~~~p---~~~~l~~~~~dg~i~lwd~~~~~~~~~~~-----~~~~~~~~~v~~l~~~~ 312 (489)
+++++ .. ....|...|.+++|+| ++.++++++.||.|++||+++++.+..+. .|... |++++|+|
T Consensus 197 ~~~~~--~~-~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~----v~~~~~~~ 269 (357)
T 3i2n_A 197 LRNMA--LR-WETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKST----VWQVRHLP 269 (357)
T ss_dssp TTTTE--EE-EEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSC----EEEEEEET
T ss_pred CccCc--ee-eecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCC----EEEEEECC
Confidence 99876 33 3457889999999999 99999999999999999999887766655 77766 88888888
Q ss_pred CCc-ceeeccccceeeccceeEEEeC-------CCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCcccccc
Q 037120 313 MLE-KIGTLKAQSKIVSQEIHSIDLD-------PSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQL 384 (489)
Q Consensus 313 ~~~-~i~~~~~~~~~~~~~i~~~~~~-------p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (489)
++. ++++......+. ++.+... +++.... ..+.+ ..+....+|. .
T Consensus 270 ~~~~~l~~~~~dg~i~---iwd~~~~~~~~~~~~~g~~~~---~~~~~-~~~~~~~~~~--------------------~ 322 (357)
T 3i2n_A 270 QNRELFLTAGGAGGLH---LWKYEYPIQRSKKDSEGIEMG---VAGSV-SLLQNVTLST--------------------Q 322 (357)
T ss_dssp TEEEEEEEEETTSEEE---EEEEECCSCC--CCTTSCCCC---CCCEE-EEEEEEECCS--------------------S
T ss_pred CCCcEEEEEeCCCcEE---EeecCCCcccccccCCCCccc---ccccc-ceeeccccCC--------------------C
Confidence 876 454322111111 1111100 0000000 00000 1111222221 1
Q ss_pred CCCcceeecCCcEEEEeecCCCcEEEEeccCC
Q 037120 385 HLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPG 416 (489)
Q Consensus 385 ~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~ 416 (489)
.+..++|+|++..++++|+.|+.|+|||+.+.
T Consensus 323 ~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 323 PISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred CeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 23446788887777779999999999999865
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=219.42 Aligned_cols=286 Identities=10% Similarity=0.041 Sum_probs=194.3
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..+.+++|+|++.++++++.|+.|++||+.+.+.... .....+.+|... |.+++|++++. ++++++.
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~---------~~~~~~~~~~~~---v~~~~~~~~~~-~~~s~~~ 189 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRL---------SPPEKYKKKLGF---VETISIPEHNE-LWVSQMQ 189 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEE---------CCCHHHHTTCCE---EEEEEEGGGTE-EEEEEGG
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeee---------cCcccccccCCc---eeEEEEcCCCE-EEEEECC
Confidence 4477999999888888888999999999988554431 111122345555 99999998874 8888887
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~ 256 (489)
| +.|++||+... .. .. .+..|...+.+++|+|++..++++++.|+.|++||+++++ .+..+.. .
T Consensus 190 d-~~v~~~d~~~~-----~~---~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~--~~~~~~~-~ 253 (433)
T 3bws_A 190 A-NAVHVFDLKTL-----AY---KA----TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKL--EIRKTDK-I 253 (433)
T ss_dssp G-TEEEEEETTTC-----CE---EE----EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTE--EEEECCC-C
T ss_pred C-CEEEEEECCCc-----eE---EE----EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCc--EEEEecC-C
Confidence 7 99999999432 11 11 1245778999999999999344566689999999999875 4444433 4
Q ss_pred CceeEEEEeecCCEEEEEe--------CCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeec
Q 037120 257 GTLNSIQLHAENQIIFAAG--------KHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVS 328 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~--------~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~ 328 (489)
..+.+++|+|+++++++++ .||.|++||+++++.+..+. +... +.+++|+|+++.+
T Consensus 254 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~----~~~~~~~~~g~~l----------- 317 (433)
T 3bws_A 254 GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGN----KRHIVSGNTENKI----------- 317 (433)
T ss_dssp SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEEC----EEEEEECSSTTEE-----------
T ss_pred CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-CCCC----cceEEECCCCCEE-----------
Confidence 5699999999999999988 48899999999887655442 2333 6677777766533
Q ss_pred cceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecC----
Q 037120 329 QEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSS---- 404 (489)
Q Consensus 329 ~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~---- 404 (489)
++....++-..+++...+........ . .....++|+|++..+++++..
T Consensus 318 ---------------~~~~~~~~~v~v~d~~~~~~~~~~~~------~-------~~~~~~~~s~dg~~l~~~~~~~~~~ 369 (433)
T 3bws_A 318 ---------------YVSDMCCSKIEVYDLKEKKVQKSIPV------F-------DKPNTIALSPDGKYLYVSCRGPNHP 369 (433)
T ss_dssp ---------------EEEETTTTEEEEEETTTTEEEEEEEC------S-------SSEEEEEECTTSSEEEEEECCCCCT
T ss_pred ---------------EEEecCCCEEEEEECCCCcEEEEecC------C-------CCCCeEEEcCCCCEEEEEecCCCcc
Confidence 22211111111222222211111000 0 012335677776655555443
Q ss_pred ----------CCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEecc-CcceeE
Q 037120 405 ----------DHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGT-KNSSLL 473 (489)
Q Consensus 405 ----------d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs-~dg~i~ 473 (489)
||.|++||+.++ +.+..+. . ...+.+++|+|+++.|++++ .|+.|.
T Consensus 370 ~~~~~~~g~~dg~v~~~d~~~~----------~~~~~~~------------~-~~~~~~~~~s~dg~~l~~~~~~d~~i~ 426 (433)
T 3bws_A 370 TEGYLKKGLVLGKVYVIDTTTD----------TVKEFWE------------A-GNQPTGLDVSPDNRYLVISDFLDHQIR 426 (433)
T ss_dssp TTCTTSCCSSCCEEEEEETTTT----------EEEEEEE------------C-SSSEEEEEECTTSCEEEEEETTTTEEE
T ss_pred ccccccccccceEEEEEECCCC----------cEEEEec------------C-CCCCceEEEcCCCCEEEEEECCCCeEE
Confidence 679999999888 6665554 3 45789999999999888776 599999
Q ss_pred EEecc
Q 037120 474 VVSQK 478 (489)
Q Consensus 474 v~~~~ 478 (489)
+|..+
T Consensus 427 v~~~~ 431 (433)
T 3bws_A 427 VYRRD 431 (433)
T ss_dssp EEEET
T ss_pred EEEec
Confidence 99754
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=206.40 Aligned_cols=302 Identities=13% Similarity=0.051 Sum_probs=179.5
Q ss_pred eeEEEECCCCc---EEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 99 ISALDFDCKGI---YLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 99 V~~~~fs~~g~---~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
+.++.|-..|- .+++++. ..|++|+..+.. ..+....+.+|... |..+.|.|+..+++..+-
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~-----------~~~~~~~~~~~~~~---v~~~~~~~~~~~~~~~~~ 106 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITACE-DVVSLWKALDAW-----------QWEKLYTWHFAEVP---VLQIVPVPDVYNLVCVAL 106 (356)
T ss_dssp EEEEEEC----CEEEEEEEES-SEEEEEEESSSS-----------BEEEEEEEECCSSC---EEEECCCTTCCSCEEEEE
T ss_pred EeeeeeccCCCCccEEEEecc-ceEEEcccCCCc-----------cceeeEEEeccCce---eEEEEEcCcccceeeeee
Confidence 66777766553 5666665 589999998841 12223334555555 888999998877776665
Q ss_pred cCCCEEEEEEeccCCCCCc-eeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe--CCCcEEEEECCC-CCcCceee
Q 037120 176 TRSNVVSIYDIGYISDEPV-EVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD--THGVVNIWDRRV-GVLPSLEL 251 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s--~dg~i~iwd~~~-~~~~~~~~ 251 (489)
|.+.+=+++.-...+. ..+...... .+|...|.++ ++++ ++.+++ .|+.|++|++.. ++ .+..
T Consensus 107 ---~~~~~~~v~sla~spd~~~~~~~l~s----~g~~~~v~~l---~~g~-lv~ss~~g~d~~V~~~~~s~dG~--~~~s 173 (356)
T 2w18_A 107 ---GNLEIREIRALFCSSDDESEKQVLLK----SGNIKAVLGL---TKRR-LVSSSGTLSDQQVEVMTFAEDGG--GKEN 173 (356)
T ss_dssp ---CSSSEEEEEEECC------CCEEEEE----EEEEEEEEEE---TTTE-EEEEESSSTTCEEEEEEECTTSC--EEEE
T ss_pred ---ccccccceEEEEECCCccccccEEEe----CCCeEEEEec---CCCc-EEEecccCCCCcEEEEEECCCCc--eeee
Confidence 3333222221110110 000000000 3355556554 4554 555543 599999999955 44 4555
Q ss_pred ccCCCCceeEEEEee---cCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeec
Q 037120 252 STGSHGTLNSIQLHA---ENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVS 328 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p---~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~ 328 (489)
...|...++.++|+| ++.+|++++.|++|+|||++++++++++.+|... ...+.+++|+|+|..+.....
T Consensus 174 ~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~-v~~v~~vafSpdG~~lvs~s~------ 246 (356)
T 2w18_A 174 QFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY-QASVCHKAYSEMGLLFIVLSH------ 246 (356)
T ss_dssp EEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC----CCCEEEEEEETTEEEEEEC-------
T ss_pred eccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc-eeeeEEEEECCCCCEEEEecc------
Confidence 668999999999999 7899999999999999999999999999865421 123778899999887754221
Q ss_pred cceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcE
Q 037120 329 QEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGI 408 (489)
Q Consensus 329 ~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i 408 (489)
+.+...++.+..+.-.++++..++....+... .+ ++... ....+... .+.++++|+.|++|
T Consensus 247 ---------~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~--~~-p~Gh~------~~~lsg~~-sg~~lASgS~DgTI 307 (356)
T 2w18_A 247 ---------PCAKESESLRSPVFQLIVINPKTTLSVGVMLY--CL-PPGQA------GRFLEGDV-KDHCAAAILTSGTI 307 (356)
T ss_dssp --------------------CCEEEEEEETTTTEEEEEEEE--CC-CTTCC------CCEEEEEE-ETTEEEEEETTSCE
T ss_pred ---------CCCcceeeccCCCcEEEEEECCCCEEEEEEEe--ec-cCCCc------ceeEcccc-CCCEEEEEcCCCcE
Confidence 00001111111111112223222222111100 00 00000 00000000 04478999999999
Q ss_pred EEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceE-EEEeeCCCCeEEeccCcceeEEEe
Q 037120 409 HLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVT-ACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 409 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
+|||+.++ +.+..+. +|.+.|. +++|+|++++|+||+.|++|+||.
T Consensus 308 kIWDl~tG----------k~l~tL~------------gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 308 AIWDLLLG----------QCTALLP------------PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp EEEETTTC----------SEEEEEC------------CC--CCCCEEEECSSSSEEEEECTTSCEEEEE
T ss_pred EEEECCCC----------cEEEEec------------CCCCCeEEEEEECCCCCEEEEEECCCcEEEec
Confidence 99999999 8888888 8988765 589999999999999999999996
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-25 Score=216.41 Aligned_cols=196 Identities=13% Similarity=0.102 Sum_probs=150.6
Q ss_pred cccCCCceeEEEECC-CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDC-KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~-~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..|...|.+++|+| ++++||+|+.||.|+|||+.+...... .......+.+|... |.+++|+|++..+
T Consensus 77 ~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~-------~~~~~~~~~~h~~~---v~~~~~~p~~~~~ 146 (402)
T 2aq5_A 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLP-------LREPVITLEGHTKR---VGIVAWHPTAQNV 146 (402)
T ss_dssp BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSC-------BCSCSEEEECCSSC---EEEEEECSSBTTE
T ss_pred EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccc-------cCCceEEecCCCCe---EEEEEECcCCCCE
Confidence 455777899999999 999999999999999999988432211 01222334567766 9999999998779
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeec--CCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCc
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVG--SDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPS 248 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 248 (489)
|++++.| |+|++||+... .. ...+ .+|...|.+++|+|++. +|++++.|+.|++||+++++ .
T Consensus 147 l~s~~~d-g~i~iwd~~~~-----~~-------~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~--~ 210 (402)
T 2aq5_A 147 LLSAGCD-NVILVWDVGTG-----AA-------VLTLGPDVHPDTIYSVDWSRDGA-LICTSCRDKRVRVIEPRKGT--V 210 (402)
T ss_dssp EEEEETT-SCEEEEETTTT-----EE-------EEEECTTTCCSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTE--E
T ss_pred EEEEcCC-CEEEEEECCCC-----Cc-------cEEEecCCCCCceEEEEECCCCC-EEEEEecCCcEEEEeCCCCc--e
Confidence 9999988 99999999432 11 1223 56899999999999998 99999999999999999876 4
Q ss_pred eeec-cCCCCc-eeEEEEeecCCEEEEE---eCCCeEEEEEcCCCcc-cceee-cCCccCCCCeeEEEeCCCCcce
Q 037120 249 LELS-TGSHGT-LNSIQLHAENQIIFAA---GKHGSIYLWDLRGGRT-SAPFH-NHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 249 ~~~~-~~h~~~-v~~~~~~p~~~~l~~~---~~dg~i~lwd~~~~~~-~~~~~-~~~~~~~~~v~~l~~~~~~~~i 317 (489)
+..+ ..|.+. +.+++|+|++.++++| +.|+.|++||+++++. +.... .+... +.+++|+|++..+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l 282 (402)
T 2aq5_A 211 VAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSG----VLLPFFDPDTNIV 282 (402)
T ss_dssp EEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSS----CEEEEEETTTTEE
T ss_pred eeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCc----eeEEEEcCCCCEE
Confidence 5555 577766 8999999999999888 6799999999998765 22222 23333 6666666665544
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-25 Score=214.46 Aligned_cols=225 Identities=14% Similarity=0.175 Sum_probs=170.3
Q ss_pred ccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecC--CCcE
Q 037120 149 LLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAV--NTSR 226 (489)
Q Consensus 149 ~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~ 226 (489)
.+|... |++++|+|++. +|++++.| |.|+|||+... ... ....+.+|...|++++|+++ +. +
T Consensus 8 ~~h~~~---v~~~~~s~~~~-~l~~~~~d-g~i~iw~~~~~------~~~----~~~~~~~h~~~v~~~~~~~~~~~~-~ 71 (379)
T 3jrp_A 8 NAHNEL---IHDAVLDYYGK-RLATCSSD-KTIKIFEVEGE------THK----LIDTLTGHEGPVWRVDWAHPKFGT-I 71 (379)
T ss_dssp EECCCC---EEEEEECSSSS-EEEEEETT-SCEEEEEEETT------EEE----EEEEECCCSSCEEEEEECCGGGCS-E
T ss_pred cCCccc---EEEEEEcCCCC-EEEEEECC-CcEEEEecCCC------cce----eeeEecCCCCcEEEEEeCCCCCCC-E
Confidence 557666 99999999986 78888877 99999999421 111 22234789999999999877 77 9
Q ss_pred EEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeec--CCEEEEEeCCCeEEEEEcCCCcc--cceeecCCccCC
Q 037120 227 LIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAE--NQIIFAAGKHGSIYLWDLRGGRT--SAPFHNHKEVCH 302 (489)
Q Consensus 227 l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~~ 302 (489)
|++++.||.|++||+++++......+..|...|.+++|+|+ +.++++++.||.|++||++++.. ...+..|...
T Consensus 72 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~-- 149 (379)
T 3jrp_A 72 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG-- 149 (379)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTC--
T ss_pred EEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCc--
Confidence 99999999999999998753345566689999999999999 99999999999999999998754 3345566655
Q ss_pred CCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCcccc
Q 037120 303 LPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSAD 382 (489)
Q Consensus 303 ~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (489)
|.+++|+|........ . ....+
T Consensus 150 --v~~~~~~~~~~~~~~~--------------------------~------------------------~~~~~------ 171 (379)
T 3jrp_A 150 --VNSASWAPATIEEDGE--------------------------H------------------------NGTKE------ 171 (379)
T ss_dssp --EEEEEECCCC------------------------------------------------------------CT------
T ss_pred --eEEEEEcCcccccccc--------------------------c------------------------cCCCC------
Confidence 7777777653211100 0 00111
Q ss_pred ccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCC---
Q 037120 383 QLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPL--- 459 (489)
Q Consensus 383 ~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~--- 459 (489)
+.++++|+.|+.|++||+...... ......+. +|...|++++|+|+
T Consensus 172 -------------~~~l~~~~~dg~i~i~d~~~~~~~------~~~~~~~~------------~h~~~v~~~~~sp~~~~ 220 (379)
T 3jrp_A 172 -------------SRKFVTGGADNLVKIWKYNSDAQT------YVLESTLE------------GHSDWVRDVAWSPTVLL 220 (379)
T ss_dssp -------------TCEEEEEETTSCEEEEEEETTTTE------EEEEEEEC------------CCSSCEEEEEECCCCSS
T ss_pred -------------CCEEEEEeCCCeEEEEEecCCCcc------eeeEEEEe------------cccCcEeEEEECCCCCC
Confidence 678889999999999999876100 01222334 89999999999999
Q ss_pred CCeEEeccCcceeEEEecccc
Q 037120 460 NNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 460 ~~~i~sgs~dg~i~v~~~~~~ 480 (489)
+.+|++|+.||.|.||..+..
T Consensus 221 ~~~l~s~~~dg~i~iwd~~~~ 241 (379)
T 3jrp_A 221 RSYLASVSQDRTCIIWTQDNE 241 (379)
T ss_dssp SEEEEEEETTSCEEEEEESST
T ss_pred CCeEEEEeCCCEEEEEeCCCC
Confidence 899999999999999987653
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-24 Score=204.47 Aligned_cols=242 Identities=15% Similarity=0.129 Sum_probs=176.3
Q ss_pred ccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcE
Q 037120 147 KHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSR 226 (489)
Q Consensus 147 ~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 226 (489)
.+.+|... |.+++| |++. .|++++.| |.|++||+... ... ..+..|...|.+++|+|++. +
T Consensus 13 ~l~~h~~~---v~~~~~-~~~~-~l~s~~~d-g~v~vw~~~~~-----~~~-------~~~~~~~~~v~~~~~~~~~~-~ 73 (313)
T 3odt_A 13 TLKGHDQD---VRDVVA-VDDS-KVASVSRD-GTVRLWSKDDQ-----WLG-------TVVYTGQGFLNSVCYDSEKE-L 73 (313)
T ss_dssp EECCCSSC---EEEEEE-EETT-EEEEEETT-SEEEEEEESSS-----EEE-------EEEEECSSCEEEEEEETTTT-E
T ss_pred HhhCCCCC---cEEEEe-cCCC-EEEEEEcC-CcEEEEECCCC-----EEE-------EEeecCCccEEEEEECCCCC-E
Confidence 34567776 999999 7765 78888888 99999999321 111 11256888999999999999 9
Q ss_pred EEEEeCCCcEEEEECCCCCcC-ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCe
Q 037120 227 LIASDTHGVVNIWDRRVGVLP-SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPL 305 (489)
Q Consensus 227 l~s~s~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v 305 (489)
|++++.||.|++||+...... .+..+.+|...|.+++| ++.++++++.||.|++|| .++.+..+..|... +
T Consensus 74 l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~----v 145 (313)
T 3odt_A 74 LLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNAS----V 145 (313)
T ss_dssp EEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSC----E
T ss_pred EEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCc----e
Confidence 999999999999999875422 45566789999999999 678999999999999999 55667777777766 8
Q ss_pred eEEEeCC-CCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCcccccc
Q 037120 306 TSLKLAS-MLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQL 384 (489)
Q Consensus 306 ~~l~~~~-~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (489)
.++.|.| ++..+.+ ++.++. ..+++ .+........ . ...
T Consensus 146 ~~~~~~~~~~~~l~~--------------------------~~~d~~-i~i~d--~~~~~~~~~~------~-----~~~ 185 (313)
T 3odt_A 146 WDAKVVSFSENKFLT--------------------------ASADKT-IKLWQ--NDKVIKTFSG------I-----HND 185 (313)
T ss_dssp EEEEEEETTTTEEEE--------------------------EETTSC-EEEEE--TTEEEEEECS------S-----CSS
T ss_pred eEEEEccCCCCEEEE--------------------------EECCCC-EEEEe--cCceEEEEec------c-----Ccc
Confidence 8888776 5444432 222221 01111 0000000000 0 001
Q ss_pred CCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEE
Q 037120 385 HLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIV 464 (489)
Q Consensus 385 ~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~ 464 (489)
.+..++|+|++. +++|+.|+.|++||+.++ +.+..+. +|.+.|++++|+|++ .|+
T Consensus 186 ~i~~~~~~~~~~--~~~~~~dg~i~i~d~~~~----------~~~~~~~------------~~~~~i~~~~~~~~~-~l~ 240 (313)
T 3odt_A 186 VVRHLAVVDDGH--FISCSNDGLIKLVDMHTG----------DVLRTYE------------GHESFVYCIKLLPNG-DIV 240 (313)
T ss_dssp CEEEEEEEETTE--EEEEETTSEEEEEETTTC----------CEEEEEE------------CCSSCEEEEEECTTS-CEE
T ss_pred cEEEEEEcCCCe--EEEccCCCeEEEEECCch----------hhhhhhh------------cCCceEEEEEEecCC-CEE
Confidence 123456667655 778899999999999988 7777777 899999999999999 699
Q ss_pred eccCcceeEEEecccc
Q 037120 465 AGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 465 sgs~dg~i~v~~~~~~ 480 (489)
+|+.||.|.+|..+..
T Consensus 241 ~~~~dg~v~iwd~~~~ 256 (313)
T 3odt_A 241 SCGEDRTVRIWSKENG 256 (313)
T ss_dssp EEETTSEEEEECTTTC
T ss_pred EEecCCEEEEEECCCC
Confidence 9999999999986544
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=213.43 Aligned_cols=174 Identities=7% Similarity=0.001 Sum_probs=126.3
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeC--CCCCEEEEE
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNL--ANQDEVACA 174 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~--~~~~~l~s~ 174 (489)
..|.++.|+|+ +++|+.|++|++|+........... . +... ......|... |.+++|+| ++. +++++
T Consensus 77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~-~--~~~~-~~~~~~~~~~---v~~~~~~~~~~~~-~l~s~ 145 (343)
T 3lrv_A 77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSK-T--NKVL-REIEVDSANE---IIYMYGHNEVNTE-YFIWA 145 (343)
T ss_dssp ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETT-T--CCEE-EEEECCCSSC---EEEEECCC---CC-EEEEE
T ss_pred CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecC-C--ccee-EEeecCCCCC---EEEEEcCCCCCCC-EEEEE
Confidence 45778889988 9999999999999887532111100 0 0000 0001134344 99999999 775 88888
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccC
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 254 (489)
+.| |+|++||++... .+... ...|...|++++|+|++. +|++|+.||.|++||+++++... ..+..
T Consensus 146 s~d-g~i~~wd~~~~~-----~~~~~------~~~~~~~i~~~~~~pdg~-~lasg~~dg~i~iwd~~~~~~~~-~~~~~ 211 (343)
T 3lrv_A 146 DNR-GTIGFQSYEDDS-----QYIVH------SAKSDVEYSSGVLHKDSL-LLALYSPDGILDVYNLSSPDQAS-SRFPV 211 (343)
T ss_dssp ETT-CCEEEEESSSSC-----EEEEE------CCCSSCCCCEEEECTTSC-EEEEECTTSCEEEEESSCTTSCC-EECCC
T ss_pred eCC-CcEEEEECCCCc-----EEEEE------ecCCCCceEEEEECCCCC-EEEEEcCCCEEEEEECCCCCCCc-cEEec
Confidence 888 999999995331 11111 134566899999999999 99999999999999999876321 34555
Q ss_pred -CCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeec
Q 037120 255 -SHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 255 -h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
|...|++++|+|++.+|++++ |+.|++||+++++.+..+..
T Consensus 212 ~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~ 253 (343)
T 3lrv_A 212 DEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPT 253 (343)
T ss_dssp CTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCC
T ss_pred cCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecc
Confidence 999999999999999999999 55999999999876555443
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=9.2e-25 Score=215.24 Aligned_cols=176 Identities=13% Similarity=0.302 Sum_probs=144.0
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..+...|.+++| ++++|++|+.||.|+|||+.+.+... .+.+|... |.+++|+++ .+
T Consensus 169 ~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~--------------~~~~h~~~---v~~l~~~~~---~l 226 (435)
T 1p22_A 169 LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN--------------TLIHHCEA---VLHLRFNNG---MM 226 (435)
T ss_dssp ECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE--------------EECCCCSC---EEEEECCTT---EE
T ss_pred EcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE--------------EEcCCCCc---EEEEEEcCC---EE
Confidence 4557778999999 78899999999999999998854433 12345555 999999753 88
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++.| |.|++||+..... ..... .+.+|...|.+++| +++ +|++++.||.|++||+++++ ++..
T Consensus 227 ~s~s~d-g~i~vwd~~~~~~-----~~~~~----~~~~~~~~v~~~~~--~~~-~l~s~~~dg~i~vwd~~~~~--~~~~ 291 (435)
T 1p22_A 227 VTCSKD-RSIAVWDMASPTD-----ITLRR----VLVGHRAAVNVVDF--DDK-YIVSASGDRTIKVWNTSTCE--FVRT 291 (435)
T ss_dssp EEEETT-SCEEEEECSSSSC-----CEEEE----EECCCSSCEEEEEE--ETT-EEEEEETTSEEEEEETTTCC--EEEE
T ss_pred EEeeCC-CcEEEEeCCCCCC-----ceeee----EecCCCCcEEEEEe--CCC-EEEEEeCCCeEEEEECCcCc--EEEE
Confidence 888888 9999999954321 11112 23789999999999 566 99999999999999999877 6777
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEe
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKL 310 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~ 310 (489)
+.+|...|.++++ ++.++++|+.||.|++||+++++.+..+.+|... |.+++|
T Consensus 292 ~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~----v~~~~~ 344 (435)
T 1p22_A 292 LNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEEL----VRCIRF 344 (435)
T ss_dssp EECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSC----EEEEEC
T ss_pred EcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCc----EEEEEe
Confidence 7799999999998 4789999999999999999999999999988877 888877
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=222.38 Aligned_cols=265 Identities=12% Similarity=0.143 Sum_probs=166.0
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcc------------cCeeEEEEecCCC-
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQ------------KGLSDLAFSAVNT- 224 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~~~~~~~~~- 224 (489)
|++++|+|++. +|++|+.| |.|+|||+.......... .........+.+|. ..|++++|+|++.
T Consensus 31 V~~v~~s~~g~-~la~g~~d-g~v~iw~~~~~~~~~~~~-~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~ 107 (447)
T 3dw8_B 31 ISTVEFNHSGE-LLATGDKG-GRVVIFQQEQENKIQSHS-RGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA 107 (447)
T ss_dssp EEEEEECSSSS-EEEEEETT-SEEEEEEECC-----CCC-CCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred EEEEEECCCCC-EEEEEcCC-CeEEEEEecCCCCCCccc-ccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence 99999999985 88888888 999999995432100000 00111233347787 8899999999982
Q ss_pred cEEEEEeCCCcEEEEECCCCCcC-------------------------------------ce-eeccCCCCceeEEEEee
Q 037120 225 SRLIASDTHGVVNIWDRRVGVLP-------------------------------------SL-ELSTGSHGTLNSIQLHA 266 (489)
Q Consensus 225 ~~l~s~s~dg~i~iwd~~~~~~~-------------------------------------~~-~~~~~h~~~v~~~~~~p 266 (489)
..|++++.|+.|++||+.++... +. ....+|...|.+++|+|
T Consensus 108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 187 (447)
T 3dw8_B 108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS 187 (447)
T ss_dssp SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence 28999999999999998763210 00 12358999999999999
Q ss_pred cCCEEEEEeCCCeEEEEEcCCC-cccc-------eeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCC
Q 037120 267 ENQIIFAAGKHGSIYLWDLRGG-RTSA-------PFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDP 338 (489)
Q Consensus 267 ~~~~l~~~~~dg~i~lwd~~~~-~~~~-------~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p 338 (489)
+++++++| .||.|++||+++. +.+. .+..|... |++++|+|++.
T Consensus 188 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~~p~~~----------------------- 239 (447)
T 3dw8_B 188 DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEV----ITAAEFHPNSC----------------------- 239 (447)
T ss_dssp TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCC----EEEEEECSSCT-----------------------
T ss_pred CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcc----eEEEEECCCCC-----------------------
Confidence 99999998 8999999999943 3333 23344444 55555555540
Q ss_pred CCCeEEEEEecCCceEEEEeeccce----eeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEecc
Q 037120 339 SCSYQLAFHLDDGWSGVLDVYNSRV----SHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFF 414 (489)
Q Consensus 339 ~~~~~~~~~~~~~w~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~ 414 (489)
..+++++.++ ...++++..+.. ......................+..++|+|++ .++++++. +.|+|||+.
T Consensus 240 --~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~-~~v~iwd~~ 314 (447)
T 3dw8_B 240 --NTFVYSSSKG-TIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG-RYMMTRDY-LSVKVWDLN 314 (447)
T ss_dssp --TEEEEEETTS-CEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS-SEEEEEES-SEEEEEETT
T ss_pred --cEEEEEeCCC-eEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCC-CEEEEeeC-CeEEEEeCC
Confidence 3333333222 223444433322 11111000000000000000134456777765 45667777 999999998
Q ss_pred C-CCCCCeeeccCcccchhhHhhhhcccCCcccCCC---------------ceEEEEeeCCCCeEEeccCcceeEEEecc
Q 037120 415 P-GSSSPSHVDYNEDIESLSERTKLKKENRFVPLSE---------------GVTACVTHPLNNTIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 415 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------------~V~~va~~p~~~~i~sgs~dg~i~v~~~~ 478 (489)
. + +.+..+. +|.. .+..++|+|++.+|++|+.||.|.||..+
T Consensus 315 ~~~----------~~~~~~~------------~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~ 372 (447)
T 3dw8_B 315 MEN----------RPVETYQ------------VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRN 372 (447)
T ss_dssp CCS----------SCSCCEE------------SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETT
T ss_pred CCc----------cccceee------------ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcC
Confidence 6 5 4444444 4432 13459999999999999999999999876
Q ss_pred cc
Q 037120 479 QQ 480 (489)
Q Consensus 479 ~~ 480 (489)
..
T Consensus 373 ~~ 374 (447)
T 3dw8_B 373 TK 374 (447)
T ss_dssp TC
T ss_pred CC
Confidence 54
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-24 Score=207.61 Aligned_cols=269 Identities=10% Similarity=0.013 Sum_probs=182.9
Q ss_pred cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEecc
Q 037120 109 IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGY 188 (489)
Q Consensus 109 ~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~ 188 (489)
.++++++.|+.|++||+.+.+.... +..|. . +.+++|+|++..++++++.| ++|++||+..
T Consensus 3 ~l~vs~~~d~~v~v~d~~~~~~~~~--------------~~~~~-~---~~~~~~s~dg~~l~~~~~~d-~~i~v~d~~~ 63 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTSNKVTAT--------------IPVGS-N---PMGAVISPDGTKVYVANAHS-NDVSIIDTAT 63 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE--------------EECSS-S---EEEEEECTTSSEEEEEEGGG-TEEEEEETTT
T ss_pred EEEEEcCCCCEEEEEECCCCeEEEE--------------eecCC-C---cceEEECCCCCEEEEECCCC-CeEEEEECCC
Confidence 4688899999999999988544431 11222 2 88999999998666788777 9999999943
Q ss_pred CCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecC
Q 037120 189 ISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAEN 268 (489)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 268 (489)
+ +.+... . +...+.+++|+|+++.++++++.|+.|++||+.+++ .+..+.. ...+.+++|+|++
T Consensus 64 ~-----~~~~~~-------~-~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~--~~~~~~~-~~~~~~~~~s~dg 127 (391)
T 1l0q_A 64 N-----NVIATV-------P-AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT--VAGTVKT-GKSPLGLALSPDG 127 (391)
T ss_dssp T-----EEEEEE-------E-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEEEC-SSSEEEEEECTTS
T ss_pred C-----eEEEEE-------E-CCCCccceEECCCCCEEEEEECCCCEEEEEECCCCe--EEEEEeC-CCCcceEEECCCC
Confidence 2 222211 2 223899999999999344566678999999999876 4444433 4578999999999
Q ss_pred CEE-EEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEE
Q 037120 269 QII-FAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFH 347 (489)
Q Consensus 269 ~~l-~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~ 347 (489)
+.+ ++++.|+.|++||+++++.+..+..+ .. +.+++|+|++..+. +..
T Consensus 128 ~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~----~~~~~~~~dg~~l~--------------------------~~~ 176 (391)
T 1l0q_A 128 KKLYVTNNGDKTVSVINTVTKAVINTVSVG-RS----PKGIAVTPDGTKVY--------------------------VAN 176 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEECC-SS----EEEEEECTTSSEEE--------------------------EEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcEEEEEecC-CC----cceEEECCCCCEEE--------------------------EEe
Confidence 988 56666999999999998877776653 23 67777777776542 111
Q ss_pred ecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeec--CCCcEEEEeccCCCCCCeeecc
Q 037120 348 LDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSS--SDHGIHLLDFFPGSSSPSHVDY 425 (489)
Q Consensus 348 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs--~d~~i~vwd~~~~~~~~~~~~~ 425 (489)
..++...+++...+........ . .....++|+|++..+++++. .|+.|++||+.++
T Consensus 177 ~~~~~v~~~d~~~~~~~~~~~~------~-------~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~--------- 234 (391)
T 1l0q_A 177 FDSMSISVIDTVTNSVIDTVKV------E-------AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN--------- 234 (391)
T ss_dssp TTTTEEEEEETTTTEEEEEEEC------S-------SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---------
T ss_pred CCCCEEEEEECCCCeEEEEEec------C-------CCccceEECCCCCEEEEEecCcCCCcEEEEECCCC---------
Confidence 1111111222222211111000 0 01123567777677666665 7899999999988
Q ss_pred CcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeE-EeccCcceeEEEeccc
Q 037120 426 NEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTI-VAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i-~sgs~dg~i~v~~~~~ 479 (489)
+.+..+. .| ..+.+++|+|+++.| ++++.|+.|.+|..+.
T Consensus 235 -~~~~~~~------------~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~ 275 (391)
T 1l0q_A 235 -KITARIP------------VG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTAT 275 (391)
T ss_dssp -EEEEEEE------------CC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred -eEEEEEe------------cC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCC
Confidence 6665555 44 357999999999866 7889999999998664
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.94 E-value=7.5e-25 Score=215.47 Aligned_cols=176 Identities=16% Similarity=0.239 Sum_probs=137.6
Q ss_pred cccCCCceeEEEECCCCc-EEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDCKGI-YLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~-~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..+...|.+++|+|++. +|++|+.||.|+|||+........ .......+.+|... |.+++|+|++..+
T Consensus 177 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~-------~~~~~~~~~~h~~~---v~~v~~~p~~~~~ 246 (430)
T 2xyi_A 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHR-------VIDAKNIFTGHTAV---VEDVAWHLLHESL 246 (430)
T ss_dssp EECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGG-------EEECSEEECCCSSC---EEEEEECSSCTTE
T ss_pred ecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCc-------eeccceeecCCCCC---EeeeEEeCCCCCE
Confidence 345666799999999998 999999999999999987322110 11112233456666 9999999977779
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
|++++.| |.|++||++..... ..... +..|...|++++|+|+++.+|++|+.||.|++||+++... .+.
T Consensus 247 l~s~~~d-g~i~i~d~~~~~~~-----~~~~~----~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~-~~~ 315 (430)
T 2xyi_A 247 FGSVADD-QKLMIWDTRNNNTS-----KPSHT----VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL-KLH 315 (430)
T ss_dssp EEEEETT-SEEEEEETTCSCSS-----SCSEE----EECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS-CSE
T ss_pred EEEEeCC-CeEEEEECCCCCCC-----cceeE----eecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC-CeE
Confidence 9999888 99999999643211 11111 2568899999999999987899999999999999998543 355
Q ss_pred eccCCCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCCC
Q 037120 251 LSTGSHGTLNSIQLHAENQ-IIFAAGKHGSIYLWDLRGG 288 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~-~l~~~~~dg~i~lwd~~~~ 288 (489)
.+..|...|.+++|+|+++ ++++++.||.|++||++..
T Consensus 316 ~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 316 SFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp EEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred EeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence 6668999999999999996 5788888999999999873
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=7e-24 Score=210.72 Aligned_cols=276 Identities=14% Similarity=0.134 Sum_probs=196.9
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC-CCCE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA-NQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~-~~~~ 170 (489)
+..|...|.+++|++++ +|++|+.||+|+|||+.+..... .+.+|... |.+++|++. ....
T Consensus 158 ~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~--------------~~~~h~~~---v~~l~~~~~~~~~~ 219 (464)
T 3v7d_B 158 LSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTH--------------VFEGHNST---VRCLDIVEYKNIKY 219 (464)
T ss_dssp ECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEE--------------EECCCSSC---EEEEEEEESSSCEE
T ss_pred EeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEE--------------EECCCCCc---cEEEEEecCCCCCE
Confidence 45677889999999998 99999999999999999854443 12345555 999999953 2357
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeee-----------eceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEE
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLK-----------TRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIW 239 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~-----------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iw 239 (489)
+++++.| |+|++||+............ ....+...+.+|...|.++ ++++. ++++++.|+.|++|
T Consensus 220 l~s~s~d-~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~-~l~~~~~d~~i~vw 295 (464)
T 3v7d_B 220 IVTGSRD-NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGN-IVVSGSYDNTLIVW 295 (464)
T ss_dssp EEEEETT-SCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETT-EEEEEETTSCEEEE
T ss_pred EEEEcCC-CcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCC-EEEEEeCCCeEEEE
Confidence 8888888 99999999654322100000 0000133457899999887 56677 99999999999999
Q ss_pred ECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceee
Q 037120 240 DRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 240 d~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
|+++++ ++..+.+|...|.+++|+|+++++++|+.||.|++||+++++.+..+.+|... |.+++|++ ..+++
T Consensus 296 d~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~----v~~~~~~~--~~l~s 367 (464)
T 3v7d_B 296 DVAQMK--CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL----VGLLRLSD--KFLVS 367 (464)
T ss_dssp ETTTTE--EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEEECS--SEEEE
T ss_pred ECCCCc--EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCc----EEEEEEcC--CEEEE
Confidence 999876 66677799999999999999999999999999999999999999999999877 99999984 44432
Q ss_pred cccc---------------ceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCcccccc
Q 037120 320 LKAQ---------------SKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQL 384 (489)
Q Consensus 320 ~~~~---------------~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (489)
.... ...+...+..+.+++++..+++++ + +-..+++..++......... .. .
T Consensus 368 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-d-g~i~iwd~~~g~~~~~~~~~-----~~------~ 434 (464)
T 3v7d_B 368 AAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-E-NQFNIYNLRSGKLVHANILK-----DA------D 434 (464)
T ss_dssp EETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-T-TEEEEEETTTCCEEESCTTT-----TC------S
T ss_pred EeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-C-CeEEEEECCCCcEEehhhcc-----CC------C
Confidence 1111 111234566778899998887766 4 33456666666554321110 00 1
Q ss_pred CCCcceeecCCcEEEEeecCCCcEEEEe
Q 037120 385 HLRKPSWLSTNSIYAVGSSSDHGIHLLD 412 (489)
Q Consensus 385 ~~~~~~~~~~~~~~l~sgs~d~~i~vwd 412 (489)
.+..++|. +..++++++.|+.+.+|-
T Consensus 435 ~v~~v~~~--~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 435 QIWSVNFK--GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEEEEEEE--TTEEEEEEEETTEEEEEE
T ss_pred cEEEEEec--CCEEEEEEEeCCeEEEEE
Confidence 12334453 678888888888665543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=206.46 Aligned_cols=261 Identities=10% Similarity=-0.018 Sum_probs=170.8
Q ss_pred cCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEE
Q 037120 150 LHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIA 229 (489)
Q Consensus 150 ~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 229 (489)
+|... |.+++|+|++. +|++++.| |.|++||+...... .. ... ..+|...|++++|+|++..+|++
T Consensus 9 ~h~~~---v~~~~~s~~~~-~l~~~~~d-~~v~iw~~~~~~~~--~~---~~~----~~~~~~~v~~~~~~~~~~~~l~~ 74 (342)
T 1yfq_A 9 APKDY---ISDIKIIPSKS-LLLITSWD-GSLTVYKFDIQAKN--VD---LLQ----SLRYKHPLLCCNFIDNTDLQIYV 74 (342)
T ss_dssp CCSSC---EEEEEEEGGGT-EEEEEETT-SEEEEEEEETTTTE--EE---EEE----EEECSSCEEEEEEEESSSEEEEE
T ss_pred CCCCc---EEEEEEcCCCC-EEEEEcCC-CeEEEEEeCCCCcc--cc---cee----eeecCCceEEEEECCCCCcEEEE
Confidence 35555 99999999976 77778877 99999999543211 11 111 24688999999999986436899
Q ss_pred EeCCCcEEEEEC-CCCCcCceeeccC--CCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC---------CcccceeecC
Q 037120 230 SDTHGVVNIWDR-RVGVLPSLELSTG--SHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRG---------GRTSAPFHNH 297 (489)
Q Consensus 230 ~s~dg~i~iwd~-~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~---------~~~~~~~~~~ 297 (489)
++.||.|++||+ .+++ ...+.+ |...|.+++|+| +.++++++.|+.|++||+++ ++.+..+. |
T Consensus 75 ~~~dg~i~~wd~~~~~~---~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~ 149 (342)
T 1yfq_A 75 GTVQGEILKVDLIGSPS---FQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-V 149 (342)
T ss_dssp EETTSCEEEECSSSSSS---EEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-S
T ss_pred EcCCCeEEEEEeccCCc---eEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-e
Confidence 999999999999 7765 245567 999999999999 99999999999999999997 66666665 5
Q ss_pred CccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeec-cceeeecCCCCCCcCC
Q 037120 298 KEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYN-SRVSHVHCPPPAWLSD 376 (489)
Q Consensus 298 ~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~-~~~~~~~~~~~~~~~~ 376 (489)
... |.+++|++++ +.. ++.+ +-..+++... +...... ....
T Consensus 150 ~~~----v~~~~~~~~~--l~~--------------------------~~~d-~~i~i~d~~~~~~~~~~~-----~~~~ 191 (342)
T 1yfq_A 150 KNK----IFTMDTNSSR--LIV--------------------------GMNN-SQVQWFRLPLCEDDNGTI-----EESG 191 (342)
T ss_dssp CCC----EEEEEECSSE--EEE--------------------------EEST-TEEEEEESSCCTTCCCEE-----EECS
T ss_pred CCc----eEEEEecCCc--EEE--------------------------EeCC-CeEEEEECCcccccccee-----eecC
Confidence 555 8888887765 221 1111 1111222221 1100000 0000
Q ss_pred CCccccccCCCcceeec-CCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEE
Q 037120 377 SNNSADQLHLRKPSWLS-TNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACV 455 (489)
Q Consensus 377 ~~~~~~~~~~~~~~~~~-~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va 455 (489)
....+..++|+| + +.++++|+.|+.|++||+....... ..+....+... . ....-.+|...|++++
T Consensus 192 -----~~~~i~~i~~~~~~-~~~l~~~~~dg~i~i~~~~~~~~~~----~~~~~~~~~~~--~-~~~~~~~~~~~i~~~~ 258 (342)
T 1yfq_A 192 -----LKYQIRDVALLPKE-QEGYACSSIDGRVAVEFFDDQGDDY----NSSKRFAFRCH--R-LNLKDTNLAYPVNSIE 258 (342)
T ss_dssp -----CSSCEEEEEECSGG-GCEEEEEETTSEEEEEECCTTCCST----TCTTCEEEECC--C-CCTTCCSSCCCEEEEE
T ss_pred -----CCCceeEEEECCCC-CCEEEEEecCCcEEEEEEcCCCccc----ccccceeeecc--c-ccccccccceeEEEEE
Confidence 001223456666 4 5677888899999999997640000 00112222200 0 0000013556999999
Q ss_pred eeCCCCeEEeccCcceeEEEecccc
Q 037120 456 THPLNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 456 ~~p~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
|+|++.+|++|+.||.|.||..+..
T Consensus 259 ~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 259 FSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp ECTTTCCEEEEETTSCEEEEETTTT
T ss_pred EcCCCCEEEEecCCceEEEEcCccH
Confidence 9999999999999999999987643
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-24 Score=205.47 Aligned_cols=262 Identities=8% Similarity=0.095 Sum_probs=168.2
Q ss_pred ccCCCCCCceeEEEeeCCC--CCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcE
Q 037120 149 LLHIPLPQQLDAVRWNLAN--QDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSR 226 (489)
Q Consensus 149 ~~h~~~~~~V~~v~~~~~~--~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 226 (489)
.+|... |++++|+|++ ..+|++++.| |.|++||+.... ..+ ...+.+|...|++++|+|++. +
T Consensus 36 ~~h~~~---v~~~~~~~~~~~g~~l~~~~~d-g~i~iw~~~~~~----~~~------~~~~~~h~~~v~~~~~~~~~~-~ 100 (368)
T 3mmy_A 36 SSPDDS---IGCLSFSPPTLPGNFLIAGSWA-NDVRCWEVQDSG----QTI------PKAQQMHTGPVLDVCWSDDGS-K 100 (368)
T ss_dssp SCCSSC---EEEEEECCTTSSSEEEEEEETT-SEEEEEEECTTS----CEE------EEEEEECSSCEEEEEECTTSS-E
T ss_pred cCCCCc---eEEEEEcCCCCCceEEEEECCC-CcEEEEEcCCCC----cee------EEEeccccCCEEEEEECcCCC-E
Confidence 456666 9999999995 3588888888 999999994311 111 122367999999999999999 9
Q ss_pred EEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEE--eecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCC
Q 037120 227 LIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQL--HAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLP 304 (489)
Q Consensus 227 l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~--~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~ 304 (489)
|++++.||.|++||+++++ +.. ...|...|.+++| +|++.++++++.||.|++||+++++.+..+..+. .
T Consensus 101 l~s~~~dg~v~iwd~~~~~--~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~---- 172 (368)
T 3mmy_A 101 VFTASCDKTAKMWDLSSNQ--AIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-R---- 172 (368)
T ss_dssp EEEEETTSEEEEEETTTTE--EEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-C----
T ss_pred EEEEcCCCcEEEEEcCCCC--cee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-C----
Confidence 9999999999999999876 443 4579999999999 8899999999999999999999998888877653 3
Q ss_pred eeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCcccccc
Q 037120 305 LTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQL 384 (489)
Q Consensus 305 v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (489)
+.++.+.++...++... + .+..+..+..-..............
T Consensus 173 ~~~~~~~~~~~~~~~~~------------------~-~i~~~~~~~~~~~~~~~~~~~~~~~------------------ 215 (368)
T 3mmy_A 173 CYCADVIYPMAVVATAE------------------R-GLIVYQLENQPSEFRRIESPLKHQH------------------ 215 (368)
T ss_dssp EEEEEEETTEEEEEEGG------------------G-CEEEEECSSSCEEEEECCCSCSSCE------------------
T ss_pred ceEEEecCCeeEEEeCC------------------C-cEEEEEeccccchhhhccccccCCC------------------
Confidence 55555554322211100 0 0111111100000000000000000
Q ss_pred CCCcceeecC---CcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCC
Q 037120 385 HLRKPSWLST---NSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN 461 (489)
Q Consensus 385 ~~~~~~~~~~---~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~ 461 (489)
....+.+. ....+++|+.|+.|++||+...... ..+..+.............+|...|++++|+|++.
T Consensus 216 --~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 286 (368)
T 3mmy_A 216 --RCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA-------KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG 286 (368)
T ss_dssp --EEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH-------HHSEEEECSEEC----CCCEEECCEEEEEECTTTC
T ss_pred --ceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc-------ccceeeeeeecccccccccccccceEEEEEecCCC
Confidence 00111111 1344888999999999999876100 01111220000000000113444899999999999
Q ss_pred eEEeccCcceeEEEeccc
Q 037120 462 TIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 462 ~i~sgs~dg~i~v~~~~~ 479 (489)
+|++|+.||.|.||..+.
T Consensus 287 ~l~s~~~dg~i~iwd~~~ 304 (368)
T 3mmy_A 287 TLATVGSDGRFSFWDKDA 304 (368)
T ss_dssp CEEEEETTSCEEEEETTT
T ss_pred EEEEEccCCeEEEEECCC
Confidence 999999999999998764
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-24 Score=204.09 Aligned_cols=226 Identities=13% Similarity=0.147 Sum_probs=166.2
Q ss_pred ccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEec--CCCcE
Q 037120 149 LLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSA--VNTSR 226 (489)
Q Consensus 149 ~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~~ 226 (489)
.+|... |++++|+|++. +|++++.| |.|++||+...... . .....+.+|...|++++|+| ++. +
T Consensus 8 ~gH~~~---v~~~~~~~~~~-~l~~~~~d-g~i~iw~~~~~~~~----~----~~~~~~~~~~~~v~~~~~~~~~d~~-~ 73 (351)
T 3f3f_A 8 SGHDDL---VHDVVYDFYGR-HVATCSSD-QHIKVFKLDKDTSN----W----ELSDSWRAHDSSIVAIDWASPEYGR-I 73 (351)
T ss_dssp CCCSSC---EEEEEECSSSS-EEEEEETT-SEEEEEEECSSSCC----E----EEEEEEECCSSCEEEEEECCGGGCS-E
T ss_pred cccccc---eeEEEEcCCCC-EEEEeeCC-CeEEEEECCCCCCc----c----eecceeccCCCcEEEEEEcCCCCCC-E
Confidence 457666 99999999986 78888888 99999999543211 1 12233478999999999999 477 9
Q ss_pred EEEEeCCCcEEEEECCCCCc-------CceeeccCCCCceeEEEEeec--CCEEEEEeCCCeEEEEEcCCCcccceeecC
Q 037120 227 LIASDTHGVVNIWDRRVGVL-------PSLELSTGSHGTLNSIQLHAE--NQIIFAAGKHGSIYLWDLRGGRTSAPFHNH 297 (489)
Q Consensus 227 l~s~s~dg~i~iwd~~~~~~-------~~~~~~~~h~~~v~~~~~~p~--~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~ 297 (489)
|++++.||.|++||+++++. ..+..+..|...|.+++|+|+ +.++++++.||.|++||+++++.+..+...
T Consensus 74 l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 153 (351)
T 3f3f_A 74 IASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLT 153 (351)
T ss_dssp EEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEE
T ss_pred EEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccc
Confidence 99999999999999998642 135566689999999999999 999999999999999999998765554421
Q ss_pred CccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCC
Q 037120 298 KEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDS 377 (489)
Q Consensus 298 ~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (489)
. . +..+.+.+ ..+...+..+.++|+..
T Consensus 154 ~-~----~~~~~~~~------------~~~~~~~~~~~~~p~~~------------------------------------ 180 (351)
T 3f3f_A 154 S-E----MKVLSIPP------------ANHLQSDFCLSWCPSRF------------------------------------ 180 (351)
T ss_dssp E-E----EESCSCCC------------SSCSCCCEEEEECCCSS------------------------------------
T ss_pred c-c----cccccccc------------CCcccceeEEEeccCCC------------------------------------
Confidence 1 0 11111111 11222334444443310
Q ss_pred CccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcc--cchhhHhhhhcccCCcccCCCceEEEE
Q 037120 378 NNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNED--IESLSERTKLKKENRFVPLSEGVTACV 455 (489)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~h~~~V~~va 455 (489)
.+.++++++.|+.+.+|+...+ +. +..+. +|...|++++
T Consensus 181 -----------------~~~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~------------~h~~~i~~~~ 221 (351)
T 3f3f_A 181 -----------------SPEKLAVSALEQAIIYQRGKDG----------KLHVAAKLP------------GHKSLIRSIS 221 (351)
T ss_dssp -----------------SCCEEEEEETTEEEEEEECTTS----------CEEEEEECC------------CCCSCEEEEE
T ss_pred -----------------CCcEEEEecCCCcEEEEccCCC----------ceeeeeecC------------CCCcceeEEE
Confidence 1456777889999988877665 32 33444 8999999999
Q ss_pred eeCCC----CeEEeccCcceeEEEecccc
Q 037120 456 THPLN----NTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 456 ~~p~~----~~i~sgs~dg~i~v~~~~~~ 480 (489)
|+|++ .+|++|+.||.|.||..+..
T Consensus 222 ~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 222 WAPSIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp ECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred ECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 99998 89999999999999987654
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=217.41 Aligned_cols=118 Identities=13% Similarity=0.134 Sum_probs=90.1
Q ss_pred CCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEec--------CCCcEEEEEeCCCcEEEE
Q 037120 168 QDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSA--------VNTSRLIASDTHGVVNIW 239 (489)
Q Consensus 168 ~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--------~~~~~l~s~s~dg~i~iw 239 (489)
..++++++.| ++|+|||+.... .. .......+.+|.+.|++++|+| +++ +|++++.|++|+||
T Consensus 101 ~~~las~~~d-~~v~lw~~~~~~-----~~--~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~-~las~s~D~tv~~W 171 (393)
T 4gq1_A 101 SLFLACVCQD-NTVRLIITKNET-----II--TQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ-VIASVGDDCTLIIW 171 (393)
T ss_dssp EEEEEEEETT-SCEEEEEEETTE-----EE--EEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE-EEEEEETTSEEEEE
T ss_pred CCEEEEEeCC-CcEEEEECCCCc-----cc--eeeeecccCCCCCceEEEEEccccccccCCCCC-EEEEEECCCeEEEE
Confidence 3478899988 999999994331 11 1112344689999999999998 677 99999999999999
Q ss_pred ECCCCCcCceeeccCCCCceeEEEEeecCC-EEEEEeCCCeEEEEEcCCCcccceeec
Q 037120 240 DRRVGVLPSLELSTGSHGTLNSIQLHAENQ-IIFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 240 d~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
|++++. .......|...|.+++|+|++. +|++++.||+|++||+++++.......
T Consensus 172 d~~~~~--~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~ 227 (393)
T 4gq1_A 172 RLTDEG--PILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQ 227 (393)
T ss_dssp EEETTE--EEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC-------
T ss_pred ECCCCc--eeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccc
Confidence 998765 4445568889999999999875 788888999999999999876544443
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.9e-24 Score=198.64 Aligned_cols=248 Identities=13% Similarity=0.155 Sum_probs=169.4
Q ss_pred ccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 93 SFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
..+...|++++|+|+|++||+|+.||+|+|||+++.+.... +.+|... +.++.+.+ .+++
T Consensus 64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~--------------~~~h~~~---~~~~~~~~---~~l~ 123 (318)
T 4ggc_A 64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN--------------MTSHSAR---VGSLSWNS---YILS 123 (318)
T ss_dssp CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE--------------EECCSSC---EEEEEEET---TEEE
T ss_pred cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE--------------ecCccce---EEEeecCC---CEEE
Confidence 34556699999999999999999999999999998655441 2345544 66666654 3888
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC--cee
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP--SLE 250 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~ 250 (489)
+++.+ +.+++|+...... ....+.+|...+..+.|.+++. +|++++.|+.|++||+++++.. ...
T Consensus 124 s~~~~-~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~ 190 (318)
T 4ggc_A 124 SGSRS-GHIHHHDVRVAEH-----------HVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVNVWPSAPGEGGWVPLQ 190 (318)
T ss_dssp EEETT-SEEEEEETTSSSC-----------EEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEESSCBTTBSCCSE
T ss_pred EEecC-CceEeeecCCCce-----------eEEEEcCccCceEEEEEcCCCC-EEEEEecCcceeEEECCCCccccccee
Confidence 88888 9999999843211 1222377999999999999999 9999999999999999986533 233
Q ss_pred eccCCCCceeEEEEeecCCEEE---EEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceee
Q 037120 251 LSTGSHGTLNSIQLHAENQIIF---AAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIV 327 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~---~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~ 327 (489)
....|.+.|.+++++|++..++ +++.+++|++||.+......... +... +..+.|++++..+....
T Consensus 191 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~----v~~~~~~~~~~~~~~~s------ 259 (318)
T 4ggc_A 191 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQ----VCSILWSPHYKELISGH------ 259 (318)
T ss_dssp EECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSC----EEEEEEETTTTEEEEEE------
T ss_pred eecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceee----eeeeeecccccceEEEE------
Confidence 4457788999999999877544 33459999999999876544433 3333 77777777665543210
Q ss_pred ccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCc
Q 037120 328 SQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHG 407 (489)
Q Consensus 328 ~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~ 407 (489)
-+.++ .+..+..... ..+..+.+|...+.+ ++|+|+ +.+|++||.|++
T Consensus 260 --------g~~d~-~i~iwd~~~~--~~~~~l~gH~~~V~~--------------------l~~spd-g~~l~S~s~D~~ 307 (318)
T 4ggc_A 260 --------GFAQN-QLVIWKYPTM--AKVAELKGHTSRVLS--------------------LTMSPD-GATVASAAADET 307 (318)
T ss_dssp --------CTTTC-CEEEEETTTC--CEEEEECCCSSCEEE--------------------EEECTT-SSCEEEEETTTE
T ss_pred --------EcCCC-EEEEEECCCC--cEEEEEcCCCCCEEE--------------------EEEcCC-CCEEEEEecCCe
Confidence 00011 1111111110 123333444433333 455555 567889999999
Q ss_pred EEEEeccCC
Q 037120 408 IHLLDFFPG 416 (489)
Q Consensus 408 i~vwd~~~~ 416 (489)
|+|||+...
T Consensus 308 v~iWd~~~~ 316 (318)
T 4ggc_A 308 LRLWRCFEL 316 (318)
T ss_dssp EEEECCSCC
T ss_pred EEEEECCCC
Confidence 999999754
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-23 Score=206.95 Aligned_cols=277 Identities=14% Similarity=0.109 Sum_probs=180.8
Q ss_pred cccCCCceeEEEECCCCcEE-EEEecCCeEEEEeCC--CcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCC
Q 037120 92 RSFGKPGISALDFDCKGIYL-VSATRSGCLTVHDFE--SLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQ 168 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~l-a~g~~dg~i~vwd~~--~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~ 168 (489)
...+...|.+++|+|+|++| |+|+.||.|+|||+. +..... .+. ...|... |.+++|+|++.
T Consensus 98 ~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~--------~~~----~~~~~~~---v~~~~~sp~~~ 162 (450)
T 2vdu_B 98 APPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLK--------LRK----RFCFSKR---PNAISIAEDDT 162 (450)
T ss_dssp --CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEE--------EEE----EEECSSC---EEEEEECTTSS
T ss_pred CCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceee--------eee----cccCCCC---ceEEEEcCCCC
Confidence 44556679999999999996 899999999999998 533322 111 0123334 99999999986
Q ss_pred CEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecC---CCcEEEEEeCCCcEEEEECCCCC
Q 037120 169 DEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAV---NTSRLIASDTHGVVNIWDRRVGV 245 (489)
Q Consensus 169 ~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~l~s~s~dg~i~iwd~~~~~ 245 (489)
.|++++.+ |.|++|++...... . .....+.+|...|++++|+|+ +. +|++++.|+.|++||+++++
T Consensus 163 -~l~~~~~~-g~v~~~~~~~~~~~-----~---~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~~~ 231 (450)
T 2vdu_B 163 -TVIIADKF-GDVYSIDINSIPEE-----K---FTQEPILGHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQCF 231 (450)
T ss_dssp -EEEEEETT-SEEEEEETTSCCCS-----S---CCCCCSEECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESCTT
T ss_pred -EEEEEeCC-CcEEEEecCCcccc-----c---ccceeeecccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCCCc
Confidence 77788877 99999999543211 0 011123678999999999999 77 99999999999999999876
Q ss_pred cCceee-ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCC--Ccceeeccc
Q 037120 246 LPSLEL-STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASM--LEKIGTLKA 322 (489)
Q Consensus 246 ~~~~~~-~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~--~~~i~~~~~ 322 (489)
++.. ..+|...|.+++|+ ++.+|++++.|+.|++||+++++.+..+..+.. +..+.+... ...+ ...
T Consensus 232 --~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~ 301 (450)
T 2vdu_B 232 --IVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSL-----IKPYLNDQHLAPPRF--QNE 301 (450)
T ss_dssp --CEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHH-----HGGGCCTTSBC---------
T ss_pred --eeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhh-----hhhhhhhcccccccc--ccc
Confidence 4444 55899999999999 999999999999999999999988777654321 110000000 0000 001
Q ss_pred cceeeccceeEEEeCCCCCeEEEEEecCCceEEEEe--eccc-eeeecCCCCCCcCCCCccccccCCCcceeecCCcEEE
Q 037120 323 QSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDV--YNSR-VSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYA 399 (489)
Q Consensus 323 ~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 399 (489)
........|..+.++|++.++++.+..++-..++++ ..+. ...+.... .. ..+..++|.| ++.++
T Consensus 302 ~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~----~~-------~~v~~~~~~~-~~~~v 369 (450)
T 2vdu_B 302 NNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIIT----FP-------YNVISLSAHN-DEFQV 369 (450)
T ss_dssp ---CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEE----CS-------SCEEEEEEET-TEEEE
T ss_pred ccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEec----cC-------CceEEEEecC-CcEEE
Confidence 111223456778888888877777644443445555 2221 11110000 00 1124467777 45666
Q ss_pred EeecC------CCcEEEEeccCC
Q 037120 400 VGSSS------DHGIHLLDFFPG 416 (489)
Q Consensus 400 ~sgs~------d~~i~vwd~~~~ 416 (489)
+.++. ++.|.+|.+...
T Consensus 370 ~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 370 TLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp EECCTTCCSSCCCSEEEEEEETT
T ss_pred EEecccCCCCCCcceEEEEEEcC
Confidence 65553 556899988654
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-23 Score=206.25 Aligned_cols=264 Identities=12% Similarity=0.183 Sum_probs=190.6
Q ss_pred ccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcE
Q 037120 147 KHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSR 226 (489)
Q Consensus 147 ~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 226 (489)
.+.+|.... +.++.++ + ..+++++.| |+|++||+..+ . ....+.+|...|.+++|+ +. .
T Consensus 113 ~l~~h~~~v--~~~~~~~--g-~~l~sg~~d-g~i~vwd~~~~-----~-------~~~~~~~h~~~v~~~~~~--~~-~ 171 (445)
T 2ovr_B 113 VLKGHDDHV--ITCLQFC--G-NRIVSGSDD-NTLKVWSAVTG-----K-------CLRTLVGHTGGVWSSQMR--DN-I 171 (445)
T ss_dssp EEECSTTSC--EEEEEEE--T-TEEEEEETT-SCEEEEETTTC-----C-------EEEECCCCSSCEEEEEEE--TT-E
T ss_pred EecccCCCc--EEEEEEc--C-CEEEEEECC-CcEEEEECCCC-----c-------EEEEEcCCCCCEEEEEec--CC-E
Confidence 345676642 4666665 4 388888888 99999999432 1 122347899999999997 45 8
Q ss_pred EEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCee
Q 037120 227 LIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLT 306 (489)
Q Consensus 227 l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 306 (489)
+++++.||.|++||+.+++ ++..+.+|...|.+++|+ +..+++++.||.|++||+++++.+..+.+|... |.
T Consensus 172 l~s~~~dg~i~vwd~~~~~--~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~----v~ 243 (445)
T 2ovr_B 172 IISGSTDRTLKVWNAETGE--CIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA----VR 243 (445)
T ss_dssp EEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSC----EE
T ss_pred EEEEeCCCeEEEEECCcCc--EEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCccc----EE
Confidence 9999999999999999876 666777999999999995 678999999999999999999999999998877 99
Q ss_pred EEEeCCCCcceeecc----------------ccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCC
Q 037120 307 SLKLASMLEKIGTLK----------------AQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPP 370 (489)
Q Consensus 307 ~l~~~~~~~~i~~~~----------------~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 370 (489)
+++| ++..+++.. .....+...|.++.+ ++.++++++.++. ..+++...+.........
T Consensus 244 ~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~ 318 (445)
T 2ovr_B 244 CVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS-IRVWDVETGNCIHTLTGH 318 (445)
T ss_dssp EEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSC-EEEEETTTCCEEEEECCC
T ss_pred EEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCe-EEEEECCCCCEEEEEcCC
Confidence 9999 455553211 112234567888888 6777777776654 234444444332221110
Q ss_pred CCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCc
Q 037120 371 PAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEG 450 (489)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 450 (489)
.. ...++.++ +.++++|+.|+.|++||+.++ +.+..+.. ...|...
T Consensus 319 ~~--------------~v~~~~~~-~~~l~~~~~dg~i~vwd~~~~----------~~~~~~~~---------~~~~~~~ 364 (445)
T 2ovr_B 319 QS--------------LTSGMELK-DNILVSGNADSTVKIWDIKTG----------QCLQTLQG---------PNKHQSA 364 (445)
T ss_dssp CS--------------CEEEEEEE-TTEEEEEETTSCEEEEETTTC----------CEEEEECS---------TTSCSSC
T ss_pred cc--------------cEEEEEEe-CCEEEEEeCCCeEEEEECCCC----------cEEEEEcc---------CCCCCCC
Confidence 00 00111222 558889999999999999888 66655540 0138899
Q ss_pred eEEEEeeCCCCeEEeccCcceeEEEecccc
Q 037120 451 VTACVTHPLNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 451 V~~va~~p~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
|++++|+ +.+|++|+.||.|.||..+..
T Consensus 365 v~~~~~~--~~~l~s~~~dg~v~iwd~~~~ 392 (445)
T 2ovr_B 365 VTCLQFN--KNFVITSSDDGTVKLWDLKTG 392 (445)
T ss_dssp EEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred EEEEEEC--CCEEEEEeCCCeEEEEECCCC
Confidence 9999996 579999999999999986543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=7.5e-23 Score=198.43 Aligned_cols=242 Identities=10% Similarity=0.010 Sum_probs=164.3
Q ss_pred CCceeEEEECCCCcEE-EEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 96 KPGISALDFDCKGIYL-VSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~l-a~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
...+.+++|+|+|++| ++++.|+.|++||+.+.+.... . ..+. .|.+++|+|++..+++++
T Consensus 31 ~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~--------~------~~~~----~v~~~~~spdg~~l~~~~ 92 (391)
T 1l0q_A 31 GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT--------V------PAGS----SPQGVAVSPDGKQVYVTN 92 (391)
T ss_dssp SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE--------E------ECSS----SEEEEEECTTSSEEEEEE
T ss_pred CCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE--------E------ECCC----CccceEECCCCCEEEEEE
Confidence 3458999999999977 6777899999999988554431 1 1111 289999999998666777
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccC
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 254 (489)
+.+ +.|++||+... +.+... . +...+.+++|+|+++.++++++.|+.|++||+++++ ....+..
T Consensus 93 ~~~-~~v~v~d~~~~-----~~~~~~-------~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~--~~~~~~~ 156 (391)
T 1l0q_A 93 MAS-STLSVIDTTSN-----TVAGTV-------K-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA--VINTVSV 156 (391)
T ss_dssp TTT-TEEEEEETTTT-----EEEEEE-------E-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEEEC
T ss_pred CCC-CEEEEEECCCC-----eEEEEE-------e-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc--EEEEEec
Confidence 666 99999999432 222111 1 334789999999998344788899999999999876 4444444
Q ss_pred CCCceeEEEEeecCCEEE-EEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeE
Q 037120 255 SHGTLNSIQLHAENQIIF-AAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHS 333 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~-~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~ 333 (489)
+ ..+.+++|+|++++++ +++.|+.|++||+++++.+..+.. ... +.+++|+|++..+..
T Consensus 157 ~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~----~~~~~~~~~g~~l~~-------------- 216 (391)
T 1l0q_A 157 G-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAA----PSGIAVNPEGTKAYV-------------- 216 (391)
T ss_dssp C-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSE----EEEEEECTTSSEEEE--------------
T ss_pred C-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEec-CCC----ccceEECCCCCEEEE--------------
Confidence 4 5679999999999885 555699999999999876655553 333 667777776655532
Q ss_pred EEeCCCCCeEEEEEe--cCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEE
Q 037120 334 IDLDPSCSYQLAFHL--DDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLL 411 (489)
Q Consensus 334 ~~~~p~~~~~~~~~~--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vw 411 (489)
... .++-..+++...+........ . .....+.|+|++..++++++.|+.|++|
T Consensus 217 ------------~~~~~~~~~v~~~d~~~~~~~~~~~~------~-------~~~~~~~~s~dg~~l~~s~~~d~~v~v~ 271 (391)
T 1l0q_A 217 ------------TNVDKYFNTVSMIDTGTNKITARIPV------G-------PDPAGIAVTPDGKKVYVALSFXNTVSVI 271 (391)
T ss_dssp ------------EEECSSCCEEEEEETTTTEEEEEEEC------C-------SSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred ------------EecCcCCCcEEEEECCCCeEEEEEec------C-------CCccEEEEccCCCEEEEEcCCCCEEEEE
Confidence 221 111111222222221111100 0 0112357788878888899999999999
Q ss_pred eccCC
Q 037120 412 DFFPG 416 (489)
Q Consensus 412 d~~~~ 416 (489)
|+.++
T Consensus 272 d~~~~ 276 (391)
T 1l0q_A 272 DTATN 276 (391)
T ss_dssp ETTTT
T ss_pred ECCCC
Confidence 99987
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.92 E-value=7.7e-24 Score=194.69 Aligned_cols=171 Identities=16% Similarity=0.167 Sum_probs=111.3
Q ss_pred ceeEEEECCC----CcEEEEEec--------------------CCeEEEEeCCC-cccccCCCCCCCCCcccccccccCC
Q 037120 98 GISALDFDCK----GIYLVSATR--------------------SGCLTVHDFES-LYYQCNGTLPGVGLKEDQSKHLLHI 152 (489)
Q Consensus 98 ~V~~~~fs~~----g~~la~g~~--------------------dg~i~vwd~~~-~~~~~~~~~~~~g~~~~~~~~~~h~ 152 (489)
.|++++|+|+ ++++++++. |+.|++|++.. ++. .....+|.
T Consensus 113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~--------------~~s~~~~~ 178 (356)
T 2w18_A 113 EIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGG--------------KENQFLMP 178 (356)
T ss_dssp EEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCE--------------EEEEEECC
T ss_pred ceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCce--------------eeeeccCC
Confidence 5889999999 899988774 55555555532 111 11224566
Q ss_pred CCCCceeEEEeeC--CCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEE---
Q 037120 153 PLPQQLDAVRWNL--ANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRL--- 227 (489)
Q Consensus 153 ~~~~~V~~v~~~~--~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l--- 227 (489)
.. ++.++|++ +...+|++++.| ++|+|||+..+ +.+..... ...|...+.+++|+|++. ++
T Consensus 179 ~~---v~~l~fs~~~g~~~~LaSgS~D-~TIkIWDl~TG-----k~l~tL~g----~~~~v~~v~~vafSpdG~-~lvs~ 244 (356)
T 2w18_A 179 PE---ETILTFAEVQGMQEALLGTTIM-NNIVIWNLKTG-----QLLKKMHI----DDSYQASVCHKAYSEMGL-LFIVL 244 (356)
T ss_dssp CS---SCEEEEEEEETSTTEEEEEETT-SEEEEEETTTC-----CEEEEEEC----CC---CCCEEEEEEETTE-EEEEE
T ss_pred Cc---eeeEEeeccCCCCceEEEecCC-CcEEEEECCCC-----cEEEEEcC----CCcceeeeEEEEECCCCC-EEEEe
Confidence 66 67788887 223588999988 99999999433 22222110 011335788889999998 55
Q ss_pred ---------EEEeCCCcEEEEECCCCCcCceeec-----cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccce
Q 037120 228 ---------IASDTHGVVNIWDRRVGVLPSLELS-----TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAP 293 (489)
Q Consensus 228 ---------~s~s~dg~i~iwd~~~~~~~~~~~~-----~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~ 293 (489)
++|+.|++|++||..+++ ++..+ .+|...+.+. +.++.++++++.|++|+|||+.+++++.+
T Consensus 245 s~~~~~w~laSGs~D~tIklWd~~tgk--~l~v~~~~~p~Gh~~~~lsg--~~sg~~lASgS~DgTIkIWDl~tGk~l~t 320 (356)
T 2w18_A 245 SHPCAKESESLRSPVFQLIVINPKTTL--SVGVMLYCLPPGQAGRFLEG--DVKDHCAAAILTSGTIAIWDLLLGQCTAL 320 (356)
T ss_dssp C------------CCEEEEEEETTTTE--EEEEEEECCCTTCCCCEEEE--EEETTEEEEEETTSCEEEEETTTCSEEEE
T ss_pred ccCCCcceeeccCCCcEEEEEECCCCE--EEEEEEeeccCCCcceeEcc--ccCCCEEEEEcCCCcEEEEECCCCcEEEE
Confidence 678899999999999876 33322 3666655444 44488999999999999999999999999
Q ss_pred eecCCcc
Q 037120 294 FHNHKEV 300 (489)
Q Consensus 294 ~~~~~~~ 300 (489)
+.+|...
T Consensus 321 L~gH~~~ 327 (356)
T 2w18_A 321 LPPVSDQ 327 (356)
T ss_dssp ECCC--C
T ss_pred ecCCCCC
Confidence 9887654
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.1e-24 Score=222.96 Aligned_cols=225 Identities=13% Similarity=0.166 Sum_probs=169.3
Q ss_pred ccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecC--CCcE
Q 037120 149 LLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAV--NTSR 226 (489)
Q Consensus 149 ~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~ 226 (489)
.+|... |++++|+|++. .+++++.| |+|+|||+... ... ....+.+|...|++++|+|+ +. +
T Consensus 6 ~gH~~~---V~~l~~s~dg~-~latg~~d-g~I~vwd~~~~------~~~----~~~~l~~h~~~V~~l~~s~~~~~~-~ 69 (753)
T 3jro_A 6 NAHNEL---IHDAVLDYYGK-RLATCSSD-KTIKIFEVEGE------THK----LIDTLTGHEGPVWRVDWAHPKFGT-I 69 (753)
T ss_dssp --CCCC---EEEECCCSSSC-CEEEEETT-TEEEEEEEETT------EEE----EEEEECCCSSCEEEEEECCTTSCS-E
T ss_pred ccCcce---eEEEEECCCCC-eEEEEECC-CcEEEEecCCC------CCc----cceeccCCcCceEEEEecCCCCCC-E
Confidence 456666 99999999986 77788877 99999999421 111 22334889999999999988 77 9
Q ss_pred EEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeec--CCEEEEEeCCCeEEEEEcCCCcc--cceeecCCccCC
Q 037120 227 LIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAE--NQIIFAAGKHGSIYLWDLRGGRT--SAPFHNHKEVCH 302 (489)
Q Consensus 227 l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~~ 302 (489)
|++|+.||.|++||+++++........+|...|++++|+|+ +..+++|+.||.|++||++++.. ...+..|...
T Consensus 70 l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~-- 147 (753)
T 3jro_A 70 LASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG-- 147 (753)
T ss_dssp EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSC--
T ss_pred EEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCc--
Confidence 99999999999999998754345566789999999999999 99999999999999999998744 3445566655
Q ss_pred CCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCcccc
Q 037120 303 LPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSAD 382 (489)
Q Consensus 303 ~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (489)
|.+++|+|...... +.. ....+
T Consensus 148 --v~~l~~~p~~~~~~---------------------~~~-----------------------------~~~~d------ 169 (753)
T 3jro_A 148 --VNSASWAPATIEED---------------------GEH-----------------------------NGTKE------ 169 (753)
T ss_dssp --EEEEEECCCC-----------------------------------------------------------CGG------
T ss_pred --eEEEEecCcccccc---------------------ccc-----------------------------ccCCC------
Confidence 77777776421100 000 00111
Q ss_pred ccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCC---
Q 037120 383 QLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPL--- 459 (489)
Q Consensus 383 ~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~--- 459 (489)
+.++++|+.||.|++||+.++... ......+. +|.+.|++++|+|+
T Consensus 170 -------------~~~l~sgs~dg~I~iwd~~~~~~~------~~~~~~~~------------~h~~~V~~l~~sp~~~~ 218 (753)
T 3jro_A 170 -------------SRKFVTGGADNLVKIWKYNSDAQT------YVLESTLE------------GHSDWVRDVAWSPTVLL 218 (753)
T ss_dssp -------------GCCEEEEETTSCEEEEEEETTTTE------EEEEEEEC------------CCSSCEEEEEECCCCSS
T ss_pred -------------CCEEEEEECCCeEEEEeccCCccc------ceeeeeec------------CCCCcEEEEEeccCCCC
Confidence 667889999999999999876100 01122334 89999999999999
Q ss_pred CCeEEeccCcceeEEEecccc
Q 037120 460 NNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 460 ~~~i~sgs~dg~i~v~~~~~~ 480 (489)
+..|++|+.||.|.||.....
T Consensus 219 ~~~l~s~s~Dg~I~iwd~~~~ 239 (753)
T 3jro_A 219 RSYLASVSQDRTCIIWTQDNE 239 (753)
T ss_dssp SEEEEEEESSSCEEEEEESSS
T ss_pred CCEEEEEecCCEEEEecCCCC
Confidence 899999999999999987654
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-22 Score=197.00 Aligned_cols=250 Identities=9% Similarity=0.021 Sum_probs=171.1
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
+.+++|+| +..++++++.+ +.|++||+..+ ....... ...+.+|...|.+++|++++. ++++++.|+.|+
T Consensus 125 ~~~~~~s~-~~~~~~~~~~~-~~i~~~d~~~g-----~~~~~~~--~~~~~~~~~~v~~~~~~~~~~-~~~s~~~d~~v~ 194 (433)
T 3bws_A 125 PKSVRFID-NTRLAIPLLED-EGMDVLDINSG-----QTVRLSP--PEKYKKKLGFVETISIPEHNE-LWVSQMQANAVH 194 (433)
T ss_dssp BCCCEESS-SSEEEEEBTTS-SSEEEEETTTC-----CEEEECC--CHHHHTTCCEEEEEEEGGGTE-EEEEEGGGTEEE
T ss_pred ceEEEEeC-CCeEEEEeCCC-CeEEEEECCCC-----eEeeecC--cccccccCCceeEEEEcCCCE-EEEEECCCCEEE
Confidence 56799999 44577777766 89999999433 1111111 002257889999999999988 999999999999
Q ss_pred EEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEe-CCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcc
Q 037120 238 IWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAG-KHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEK 316 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~-~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 316 (489)
+||+++++ .+..+..|...+.+++|+|+++.+++++ .|+.|++||+++++.+..+..+ .. +.+++|+|++..
T Consensus 195 ~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~----~~~~~~~~~g~~ 267 (433)
T 3bws_A 195 VFDLKTLA--YKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI-GL----PRGLLLSKDGKE 267 (433)
T ss_dssp EEETTTCC--EEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC-SE----EEEEEECTTSSE
T ss_pred EEECCCce--EEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC-CC----ceEEEEcCCCCE
Confidence 99999876 5556668889999999999999987666 5999999999998876666543 23 778888887766
Q ss_pred eeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCc
Q 037120 317 IGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNS 396 (489)
Q Consensus 317 i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (489)
+........ .+. . .+..+. +++..++........ . .....++|.|++.
T Consensus 268 l~~~~~~~~----~~~----~-~dg~i~----------~~d~~~~~~~~~~~~------~-------~~~~~~~~~~~g~ 315 (433)
T 3bws_A 268 LYIAQFSAS----NQE----S-GGGRLG----------IYSMDKEKLIDTIGP------P-------GNKRHIVSGNTEN 315 (433)
T ss_dssp EEEEEEESC----TTC----S-CCEEEE----------EEETTTTEEEEEEEE------E-------ECEEEEEECSSTT
T ss_pred EEEEECCCC----ccc----c-CCCeEE----------EEECCCCcEEeeccC------C-------CCcceEEECCCCC
Confidence 543111000 000 0 000111 122111111110000 0 0113356777778
Q ss_pred EEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccC--------
Q 037120 397 IYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTK-------- 468 (489)
Q Consensus 397 ~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~-------- 468 (489)
.++++++.|+.|++||+.++ +.+..+ .+...+.+++|+|++..+++++.
T Consensus 316 ~l~~~~~~~~~v~v~d~~~~----------~~~~~~-------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~ 372 (433)
T 3bws_A 316 KIYVSDMCCSKIEVYDLKEK----------KVQKSI-------------PVFDKPNTIALSPDGKYLYVSCRGPNHPTEG 372 (433)
T ss_dssp EEEEEETTTTEEEEEETTTT----------EEEEEE-------------ECSSSEEEEEECTTSSEEEEEECCCCCTTTC
T ss_pred EEEEEecCCCEEEEEECCCC----------cEEEEe-------------cCCCCCCeEEEcCCCCEEEEEecCCCccccc
Confidence 88899999999999999987 555443 36678999999999998877766
Q ss_pred -------cceeEEEeccc
Q 037120 469 -------NSSLLVVSQKQ 479 (489)
Q Consensus 469 -------dg~i~v~~~~~ 479 (489)
||.|.+|..+.
T Consensus 373 ~~~~g~~dg~v~~~d~~~ 390 (433)
T 3bws_A 373 YLKKGLVLGKVYVIDTTT 390 (433)
T ss_dssp TTSCCSSCCEEEEEETTT
T ss_pred cccccccceEEEEEECCC
Confidence 57999997654
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-22 Score=195.76 Aligned_cols=290 Identities=12% Similarity=0.058 Sum_probs=194.7
Q ss_pred ceeEEEECCCC-cEEEEEe----cCC----eEEEEeC--CCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeC-
Q 037120 98 GISALDFDCKG-IYLVSAT----RSG----CLTVHDF--ESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNL- 165 (489)
Q Consensus 98 ~V~~~~fs~~g-~~la~g~----~dg----~i~vwd~--~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~- 165 (489)
.|...+|++.| +++++|+ .|| .|+|||+ .+.+.... ..+.+|... +..+++++
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~------------~~~~~~~~~---~~~~~~~~~ 128 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ------------NSYKVNKQW---LRYAGHTAS 128 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEE------------EEEEECGGG---HHHHHHHHH
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEee------------eEEEcChhH---HHHHHHHHH
Confidence 46666788877 4666876 467 8999999 77443321 112334333 44455543
Q ss_pred -------------CCCCEEEEEecC-C---CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEE
Q 037120 166 -------------ANQDEVACASTR-S---NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLI 228 (489)
Q Consensus 166 -------------~~~~~l~s~~~d-~---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 228 (489)
.+..+++++..+ + +.|++||+... . ... +.+|...|.+++|+|+++ .|+
T Consensus 129 d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~--~-------~~~----l~~~~~~v~~~~~Spdg~-~la 194 (415)
T 2hqs_A 129 DEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY--N-------QFV----VHRSPQPLMSPAWSPDGS-KLA 194 (415)
T ss_dssp HHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC--S-------CEE----EEEESSCEEEEEECTTSS-EEE
T ss_pred HHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC--C-------CEE----EeCCCCcceeeEEcCCCC-EEE
Confidence 133344444321 1 69999999421 1 111 255778999999999999 899
Q ss_pred EEeCCC---cEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEE-EEeCCC--eEEEEEcCCCcccceeecCCccCC
Q 037120 229 ASDTHG---VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIF-AAGKHG--SIYLWDLRGGRTSAPFHNHKEVCH 302 (489)
Q Consensus 229 s~s~dg---~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~-~~~~dg--~i~lwd~~~~~~~~~~~~~~~~~~ 302 (489)
+++.|+ .|++||+++++ +. .+..|...+.+++|+|+|+.|+ +++.|+ .|++||+++++. ..+..|...
T Consensus 195 ~~s~~~~~~~i~~~d~~tg~--~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~-- 268 (415)
T 2hqs_A 195 YVTFESGRSALVIQTLANGA--VR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSN-- 268 (415)
T ss_dssp EEECTTSSCEEEEEETTTCC--EE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSC--
T ss_pred EEEecCCCcEEEEEECCCCc--EE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCc--
Confidence 998775 99999999876 33 3456788999999999999888 555455 599999998765 556666666
Q ss_pred CCeeEEEeCCCCcceeeccc-----c-------------ceeeccceeEEEeCCCCCeEEEEEecCCc--eEEEEeeccc
Q 037120 303 LPLTSLKLASMLEKIGTLKA-----Q-------------SKIVSQEIHSIDLDPSCSYQLAFHLDDGW--SGVLDVYNSR 362 (489)
Q Consensus 303 ~~v~~l~~~~~~~~i~~~~~-----~-------------~~~~~~~i~~~~~~p~~~~~~~~~~~~~w--~~~~~~~~~~ 362 (489)
+.+++|+|+|+.++.... . ...+...+..+.|+|++++++....+++. ..+++..++.
T Consensus 269 --~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 269 --NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp --EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCC
T ss_pred --ccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCC
Confidence 999999999987632110 0 00123457789999999999888876542 2445554444
Q ss_pred eeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCC--cEEEEeccCCCCCCeeeccCcccchhhHhhhhcc
Q 037120 363 VSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDH--GIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKK 440 (489)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (489)
...+... .....++|+|+|..+++++..++ .|++||+..+ ....+.
T Consensus 347 ~~~l~~~--------------~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~-----------~~~~l~------- 394 (415)
T 2hqs_A 347 VQVLSST--------------FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR-----------FKARLP------- 394 (415)
T ss_dssp EEECCCS--------------SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC-----------CEEECC-------
T ss_pred EEEecCC--------------CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC-----------cEEEee-------
Confidence 4322111 02345789999877666655444 7999998754 455666
Q ss_pred cCCcccCCCceEEEEeeCCCC
Q 037120 441 ENRFVPLSEGVTACVTHPLNN 461 (489)
Q Consensus 441 ~~~~~~h~~~V~~va~~p~~~ 461 (489)
+|.+.|.+++|+|...
T Consensus 395 -----~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 395 -----ATDGQVKFPAWSPYLH 410 (415)
T ss_dssp -----CSSSEEEEEEECCCCC
T ss_pred -----CCCCCCcCCccccccc
Confidence 8999999999999764
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.89 E-value=4e-21 Score=202.29 Aligned_cols=318 Identities=10% Similarity=0.013 Sum_probs=201.4
Q ss_pred CceeEEEECCCCcEEEEEec-CC-----eEEEEeCCCcccccCCCCCCCCCccccc----------c-c--ccCCCCCCc
Q 037120 97 PGISALDFDCKGIYLVSATR-SG-----CLTVHDFESLYYQCNGTLPGVGLKEDQS----------K-H--LLHIPLPQQ 157 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~-dg-----~i~vwd~~~~~~~~~~~~~~~g~~~~~~----------~-~--~~h~~~~~~ 157 (489)
..|.+++|+|||++|++++. |+ .|++||+.+.+...... ..... . . ..+......
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVD------SKVVLPGTETLSDEEKARRERQRIAAMTG 110 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEEC------GGGTC--------------------CCEE
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccc------hhhcccccccccchhhhhhhhhhhccccC
Confidence 45899999999999999998 88 99999998854332100 00000 0 0 000000022
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
|.+++|+|+++ .|++++ .+.|.+||+..+... . .. .+..|...+..++|+|||+ .|+.++ ++.|+
T Consensus 111 v~~~~~SpDg~-~l~~~~--~~~i~~~d~~~~~~~---~---~~----~l~~~~~~~~~~~~SPDG~-~la~~~-~~~i~ 175 (741)
T 2ecf_A 111 IVDYQWSPDAQ-RLLFPL--GGELYLYDLKQEGKA---A---VR----QLTHGEGFATDAKLSPKGG-FVSFIR-GRNLW 175 (741)
T ss_dssp SCCCEECTTSS-EEEEEE--TTEEEEEESSSCSTT---S---CC----BCCCSSSCEEEEEECTTSS-EEEEEE-TTEEE
T ss_pred cceeEECCCCC-EEEEEe--CCcEEEEECCCCCcc---e---EE----EcccCCcccccccCCCCCC-EEEEEe-CCcEE
Confidence 67799999997 566666 389999999543100 0 11 1255677899999999999 888887 56999
Q ss_pred EEECCCCCcCceeeccCCCCc----------------eeEEEEeecCCEEEEEeCCC-----------------------
Q 037120 238 IWDRRVGVLPSLELSTGSHGT----------------LNSIQLHAENQIIFAAGKHG----------------------- 278 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~----------------v~~~~~~p~~~~l~~~~~dg----------------------- 278 (489)
+||+.+++ ..+....+... +.+++|+|||++|++++.|+
T Consensus 176 ~~d~~~g~--~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~ 253 (741)
T 2ecf_A 176 VIDLASGR--QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRY 253 (741)
T ss_dssp EEETTTTE--EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEEC
T ss_pred EEecCCCC--EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeec
Confidence 99998865 33333333322 47899999999999987765
Q ss_pred ----------eEEEEEcCC-Ccccceee--cCCccCCCCeeEEEeCCCCcceeeccc---------------------cc
Q 037120 279 ----------SIYLWDLRG-GRTSAPFH--NHKEVCHLPLTSLKLASMLEKIGTLKA---------------------QS 324 (489)
Q Consensus 279 ----------~i~lwd~~~-~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~i~~~~~---------------------~~ 324 (489)
.|++||+.+ ++...... .|... +..++| |||+.++.... ..
T Consensus 254 ~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~ 328 (741)
T 2ecf_A 254 PAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIY----LARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLA 328 (741)
T ss_dssp CBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEE----EEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEE
T ss_pred CCCCCCCCeeEEEEEECCCCCceEEecCCCCcceE----EEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEE
Confidence 899999988 77533322 35555 999999 99987752110 00
Q ss_pred eeecc----ceeEEEeCCCCCeEEEEEecCCceEEEEee-ccceeeecCCCCCCcCCCCccccccCCCcc-eeecCCcEE
Q 037120 325 KIVSQ----EIHSIDLDPSCSYQLAFHLDDGWSGVLDVY-NSRVSHVHCPPPAWLSDSNNSADQLHLRKP-SWLSTNSIY 398 (489)
Q Consensus 325 ~~~~~----~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 398 (489)
..... .+..+.|+|+++.+++ ...+++..++... .+....+... . ..+..+ .|+|++..+
T Consensus 329 ~~~~~~~~~~~~~~~~spdg~~~~~-~~~~g~~~l~~~~~~~~~~~l~~~--~-----------~~v~~~~~~s~dg~~l 394 (741)
T 2ecf_A 329 HETSPTWVPLHNSLRFLDDGSILWS-SERTGFQHLYRIDSKGKAAALTHG--N-----------WSVDELLAVDEKAGLA 394 (741)
T ss_dssp EEECSSCCCCCSCCEECTTSCEEEE-ECTTSSCEEEEECSSSCEEESCCS--S-----------SCEEEEEEEETTTTEE
T ss_pred EcCCCCcCCcCCceEECCCCeEEEE-ecCCCccEEEEEcCCCCeeeeeec--c-----------eEEEeEeEEeCCCCEE
Confidence 01111 3457899999994444 4444443344332 2221111100 0 111223 588998888
Q ss_pred EEeecCCC--cEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCc----cee
Q 037120 399 AVGSSSDH--GIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKN----SSL 472 (489)
Q Consensus 399 l~sgs~d~--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~d----g~i 472 (489)
+++++.|+ .++||++.... .....+. + ...+.+++|+|+++.|+....+ +.+
T Consensus 395 ~~~~~~~~~~~~~l~~~~~~g---------~~~~~l~------------~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~ 452 (741)
T 2ecf_A 395 YFRAGIESARESQIYAVPLQG---------GQPQRLS------------K-APGMHSASFARNASVYVDSWSNNSTPPQI 452 (741)
T ss_dssp EEEECSSCTTCBEEEEEETTC---------CCCEECC------------C-SCSEEEEEECTTSSEEEEEEEETTEEEEE
T ss_pred EEEEeCCCCceEEEEEEEcCC---------CCeeecc------------c-CCCceEEEECCCCCEEEEEecCCCCCCeE
Confidence 88888877 89999987530 3333343 3 5668899999999977765443 567
Q ss_pred EEEecc
Q 037120 473 LVVSQK 478 (489)
Q Consensus 473 ~v~~~~ 478 (489)
.++..+
T Consensus 453 ~l~~~~ 458 (741)
T 2ecf_A 453 ELFRAN 458 (741)
T ss_dssp EEEETT
T ss_pred EEEEcC
Confidence 777543
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-21 Score=187.13 Aligned_cols=229 Identities=10% Similarity=0.062 Sum_probs=153.5
Q ss_pred ccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEE
Q 037120 149 LLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLI 228 (489)
Q Consensus 149 ~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 228 (489)
..|... |.+++|+|++. +|++|+. ..++|||+... ..... .+...+..+++.++++.+++
T Consensus 16 ~~h~~~---V~~v~fs~dg~-~la~g~~--~~~~iw~~~~~-----~~~~~---------~~~~~~~~~~~~~~~~~~~~ 75 (355)
T 3vu4_A 16 NHVSNP---VTDYEFNQDQS-CLILSTL--KSFEIYNVHPV-----AHIMS---------QEMRHLSKVRMLHRTNYVAF 75 (355)
T ss_dssp ---CCC---CCEEEECTTSS-EEEEECS--SEEEEEEETTE-----EEEEE---------EECSCCCEEEECTTSSEEEE
T ss_pred ccCCCc---eEEEEECCCCC-EEEEEcC--CEEEEEecCCc-----ceeee---------eecCCeEEEEEcCCCCEEEE
Confidence 345555 99999999986 7888874 46899998321 11111 11225788899998884446
Q ss_pred EEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC-cccceeecCCccCCCCeeE
Q 037120 229 ASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGG-RTSAPFHNHKEVCHLPLTS 307 (489)
Q Consensus 229 s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~-~~~~~~~~~~~~~~~~v~~ 307 (489)
+++.|++|++||+++++ ++..+ .|...|.+++|+++. +++ +.|+.|++||+.++ +.+..+.. . ...
T Consensus 76 ~~~~d~~v~iWd~~~~~--~~~~~-~~~~~v~~v~~~~~~--~~~-~~~~~i~i~d~~~~~~~~~~~~~---~----~~~ 142 (355)
T 3vu4_A 76 VTGVKEVVHIWDDVKKQ--DVSRI-KVDAPVKDLFLSREF--IVV-SYGDVISVFKFGNPWKRITDDIR---F----GGV 142 (355)
T ss_dssp ECSSTTEEEEEETTTTE--EEEEE-ECSSCEEEEEECSSE--EEE-EETTEEEEEESSTTCCBSSCCEE---E----EEE
T ss_pred EECCccEEEEEECCCCc--EEEEE-ECCCceEEEEEcCCE--EEE-EEcCEEEEEECCCCceeeEEecc---C----Cce
Confidence 77889999999999876 44444 366799999998764 333 35889999999987 66655554 2 333
Q ss_pred EEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEE-EecCCceEEEEee------------------------ccc
Q 037120 308 LKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAF-HLDDGWSGVLDVY------------------------NSR 362 (489)
Q Consensus 308 l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~-~~~~~w~~~~~~~------------------------~~~ 362 (489)
+++++ ..+ +.. +..++-..+++.. .+|
T Consensus 143 ~~~s~--~~l--------------------------a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h 194 (355)
T 3vu4_A 143 CEFSN--GLL--------------------------VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH 194 (355)
T ss_dssp EEEET--TEE--------------------------EEEESSCTTCEEEEECCC------------------CCEEECCC
T ss_pred EEEEc--cEE--------------------------EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc
Confidence 33333 111 111 1111111222222 222
Q ss_pred eeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCc-EEEEeccCCCCCCeeeccCcccchhhHhhhhccc
Q 037120 363 VSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHG-IHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKE 441 (489)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (489)
... +..++|+|+ +.++++|+.|++ |+|||+.++ +.+..+.
T Consensus 195 ~~~--------------------v~~~~~s~~-g~~l~s~s~d~~~v~iwd~~~~----------~~~~~~~-------- 235 (355)
T 3vu4_A 195 TNP--------------------IKMVRLNRK-SDMVATCSQDGTIIRVFKTEDG----------VLVREFR-------- 235 (355)
T ss_dssp SSC--------------------EEEEEECTT-SSEEEEEETTCSEEEEEETTTC----------CEEEEEE--------
T ss_pred CCc--------------------eEEEEECCC-CCEEEEEeCCCCEEEEEECCCC----------cEEEEEE--------
Confidence 222 234566665 578899999998 999999988 6666554
Q ss_pred CCccc-CCCceEEEEeeCCCCeEEeccCcceeEEEecccc
Q 037120 442 NRFVP-LSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 442 ~~~~~-h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
.+ |.+.|++++|+|++.+|++|+.||+|.||.-+..
T Consensus 236 ---~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 236 ---RGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp ---CTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred ---cCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 03 9999999999999999999999999999986543
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.5e-20 Score=186.69 Aligned_cols=289 Identities=15% Similarity=0.099 Sum_probs=188.4
Q ss_pred EECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEE
Q 037120 103 DFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVS 182 (489)
Q Consensus 103 ~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~ 182 (489)
+|+|++.++++++.|++|.+||..+.+.... +. .++ .+..++|+|++. .|++++.| ++|.
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~--------i~-----~g~-----~~~~v~~spdg~-~l~v~~~d-~~V~ 203 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKV--------ID-----TGY-----AVHISRMSASGR-YLLVIGRD-ARID 203 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTCCEEEE--------EE-----CST-----TEEEEEECTTSC-EEEEEETT-SEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCceEEEE--------Ee-----cCc-----ccceEEECCCCC-EEEEECCC-CeEE
Confidence 4899999999999999999999988554431 11 011 167799999997 66667777 9999
Q ss_pred EEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEec----CCCcEEEEEe-CCCcEEEEECCCCCcCceeeccC---
Q 037120 183 IYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSA----VNTSRLIASD-THGVVNIWDRRVGVLPSLELSTG--- 254 (489)
Q Consensus 183 vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~--- 254 (489)
+||+... ....+... . +...+..++|+| +++ ++++++ .+++|.+||..+.+ +++.+..
T Consensus 204 v~D~~~~---t~~~~~~i-------~-~g~~p~~va~sp~~~~dg~-~l~v~~~~~~~v~v~D~~t~~--~~~~i~~~g~ 269 (543)
T 1nir_A 204 MIDLWAK---EPTKVAEI-------K-IGIEARSVESSKFKGYEDR-YTIAGAYWPPQFAIMDGETLE--PKQIVSTRGM 269 (543)
T ss_dssp EEETTSS---SCEEEEEE-------E-CCSEEEEEEECCSTTCTTT-EEEEEEEESSEEEEEETTTCC--EEEEEECCEE
T ss_pred EEECcCC---CCcEEEEE-------e-cCCCcceEEeCCCcCCCCC-EEEEEEccCCeEEEEeccccc--cceeecccCc
Confidence 9999311 11222211 2 234679999999 999 777777 58999999998876 4544432
Q ss_pred -------C-CCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcccc--eeecCCccCCCCeeEEEeCCCCcceeecccc
Q 037120 255 -------S-HGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTSA--PFHNHKEVCHLPLTSLKLASMLEKIGTLKAQ 323 (489)
Q Consensus 255 -------h-~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~--~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~ 323 (489)
| ...+.++.++|++..+++... ++.|.+||+.+++.+. .+. +... +..+
T Consensus 270 ~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~----~~~~--------------- 329 (543)
T 1nir_A 270 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPF----LHDG--------------- 329 (543)
T ss_dssp CSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSS----CCCE---------------
T ss_pred ccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcC----ccCc---------------
Confidence 2 236889999998877666654 9999999998866433 222 1222 3344
Q ss_pred ceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCccee-ecCCcEEEEee
Q 037120 324 SKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSW-LSTNSIYAVGS 402 (489)
Q Consensus 324 ~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~sg 402 (489)
.|+|+++++++....++-..+++..++........ ...+.. -+...| .|+++.+++++
T Consensus 330 -----------~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~--g~~ph~--------g~g~~~~~p~~g~~~~s~ 388 (543)
T 1nir_A 330 -----------GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV--GKTPHP--------GRGANFVHPKYGPVWSTS 388 (543)
T ss_dssp -----------EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC--SSSBCC--------TTCEEEEETTTEEEEEEE
T ss_pred -----------eECCCCCEEEEEecCCCeEEEEECCCCeEEEeecc--CCCCCC--------CCCcccCCCCCccEEEec
Confidence 45555555554443333223444444433322111 000000 011233 46667777877
Q ss_pred c-CCCcEEEEeccCCCCCCeeecc-CcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEecc-------CcceeE
Q 037120 403 S-SDHGIHLLDFFPGSSSPSHVDY-NEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGT-------KNSSLL 473 (489)
Q Consensus 403 s-~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs-------~dg~i~ 473 (489)
+ .|++|.|||+.+.... +. -+.++.+. +|.+.+..+++||+++.|.+++ .+++|.
T Consensus 389 ~~~d~~V~v~d~~~~~~~----~~~~~~v~~l~------------~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~ 452 (543)
T 1nir_A 389 HLGDGSISLIGTDPKNHP----QYAWKKVAELQ------------GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVA 452 (543)
T ss_dssp BSSSSEEEEEECCTTTCT----TTBTSEEEEEE------------CSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEE
T ss_pred cCCCceEEEEEeCCCCCc----hhcCeEEEEEE------------cCCCCceEEEcCCCCCcEEEecCCCCCcccCceEE
Confidence 5 6899999999872000 00 05666777 8888999999999999999987 378999
Q ss_pred EEecccccc
Q 037120 474 VVSQKQQCT 482 (489)
Q Consensus 474 v~~~~~~~~ 482 (489)
||..+....
T Consensus 453 v~d~~~~~~ 461 (543)
T 1nir_A 453 VFDLKNLDA 461 (543)
T ss_dssp EEETTCTTS
T ss_pred EEECCCCCC
Confidence 998875543
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-19 Score=172.42 Aligned_cols=283 Identities=11% Similarity=-0.010 Sum_probs=181.7
Q ss_pred CceeEEEECCCCcEEEEEec-------CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCC
Q 037120 97 PGISALDFDCKGIYLVSATR-------SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQD 169 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~-------dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~ 169 (489)
.++..++|+|+|++|++++. ++.|.+||..+.+.... .. .... +..++|+|++..
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~--------~~-------~~~~---~~~~~~s~dg~~ 102 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA--------IH-------NDLK---PFGATINNTTQT 102 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE--------EE-------ESSC---CCSEEEETTTTE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE--------Ee-------cCCC---cceEEECCCCCE
Confidence 45789999999998888774 56899999988544331 10 1112 455999999976
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceee--eeecCCcccCeeEEEEecCCCcEEEEEe--CCCcEEEEECCCCC
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSV--TVVGSDVQKGLSDLAFSAVNTSRLIASD--THGVVNIWDRRVGV 245 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~l~s~s--~dg~i~iwd~~~~~ 245 (489)
++++...+ +.|.+||+... +.+.....- ..........+.+++|+|+++ .++.++ .++.|.+||..+++
T Consensus 103 l~v~~~~~-~~v~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~i~~~d~~~~~ 175 (353)
T 3vgz_A 103 LWFGNTVN-SAVTAIDAKTG-----EVKGRLVLDDRKRTEEVRPLQPRELVADDATN-TVYISGIGKESVIWVVDGGNIK 175 (353)
T ss_dssp EEEEETTT-TEEEEEETTTC-----CEEEEEESCCCCCCSSCCCCEEEEEEEETTTT-EEEEEEESSSCEEEEEETTTTE
T ss_pred EEEEecCC-CEEEEEeCCCC-----eeEEEEecCCCccccccCCCCCceEEECCCCC-EEEEEecCCCceEEEEcCCCCc
Confidence 66766666 99999999433 221111100 000000011268899999999 555554 58899999999876
Q ss_pred cCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccce
Q 037120 246 LPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSK 325 (489)
Q Consensus 246 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~ 325 (489)
....+..+...+.+++|+|+++++++++.++.|.+||+.+++.+..+..........+..++|+|+++.+.
T Consensus 176 --~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~------- 246 (353)
T 3vgz_A 176 --LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAF------- 246 (353)
T ss_dssp --EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEE-------
T ss_pred --eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEE-------
Confidence 44444435566889999999999999999999999999998876665531111011255666666665442
Q ss_pred eeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCC
Q 037120 326 IVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSD 405 (489)
Q Consensus 326 ~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d 405 (489)
+...+++...+++..++......... ....+.|+|++..++++...+
T Consensus 247 -------------------~~~~~~~~v~~~d~~~~~~~~~~~~~--------------~~~~~~~s~dg~~l~v~~~~~ 293 (353)
T 3vgz_A 247 -------------------ITDSKAAEVLVVDTRNGNILAKVAAP--------------ESLAVLFNPARNEAYVTHRQA 293 (353)
T ss_dssp -------------------EEESSSSEEEEEETTTCCEEEEEECS--------------SCCCEEEETTTTEEEEEETTT
T ss_pred -------------------EEeCCCCEEEEEECCCCcEEEEEEcC--------------CCceEEECCCCCEEEEEECCC
Confidence 22222121122232222222111110 012367888888888888889
Q ss_pred CcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCc
Q 037120 406 HGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKN 469 (489)
Q Consensus 406 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~d 469 (489)
+.|.+||..++ +.+..+. ....+.+++|+|+++.|..+..+
T Consensus 294 ~~v~~~d~~~~----------~~~~~~~-------------~~~~~~~~~~s~dg~~l~v~~~~ 334 (353)
T 3vgz_A 294 GKVSVIDAKSY----------KVVKTFD-------------TPTHPNSLALSADGKTLYVSVKQ 334 (353)
T ss_dssp TEEEEEETTTT----------EEEEEEE-------------CCSEEEEEEECTTSCEEEEEEEC
T ss_pred CeEEEEECCCC----------eEEEEEe-------------cCCCCCeEEEcCCCCEEEEEEcc
Confidence 99999999888 6665544 33468999999999966655554
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-20 Score=196.69 Aligned_cols=307 Identities=7% Similarity=-0.066 Sum_probs=192.7
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC-
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR- 177 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d- 177 (489)
+.+++|+|||+++++ +.||+|++||+.+.+.... . ..|......|.+++|+|+++ .|++++.+
T Consensus 19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~--------~------~~~~~~~~~v~~~~~SpDg~-~l~~~~~~~ 82 (723)
T 1xfd_A 19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVL--------I------EGKKIESLRAIRYEISPDRE-YALFSYNVE 82 (723)
T ss_dssp CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEE--------E------CTTTTTTTTCSEEEECTTSS-EEEEEESCC
T ss_pred ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEE--------e------ccccccccccceEEECCCCC-EEEEEecCc
Confidence 677899999998776 7899999999988443321 1 11222112388899999997 55555532
Q ss_pred -------CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 178 -------SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 178 -------~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
++.|.+||+..+.. .. . ....+|...+..++|+|||+ .|+.++. +.|++||+.+++ ..+
T Consensus 83 ~~~~~~~~~~i~~~d~~~~~~---~~---l----~~~~~~~~~~~~~~~SPdG~-~la~~~~-~~i~~~~~~~g~--~~~ 148 (723)
T 1xfd_A 83 PIYQHSYTGYYVLSKIPHGDP---QS---L----DPPEVSNAKLQYAGWGPKGQ-QLIFIFE-NNIYYCAHVGKQ--AIR 148 (723)
T ss_dssp CCSSSCCCSEEEEEESSSCCC---EE---C----CCTTCCSCCCSBCCBCSSTT-CEEEEET-TEEEEESSSSSC--CEE
T ss_pred cceeecceeeEEEEECCCCce---Ee---c----cCCccccccccccEECCCCC-EEEEEEC-CeEEEEECCCCc--eEE
Confidence 17899999954321 11 1 11245666789999999999 8888875 899999999876 333
Q ss_pred eccCCCCc------------------eeEEEEeecCCEEEEEeCCC----------------------------------
Q 037120 251 LSTGSHGT------------------LNSIQLHAENQIIFAAGKHG---------------------------------- 278 (489)
Q Consensus 251 ~~~~h~~~------------------v~~~~~~p~~~~l~~~~~dg---------------------------------- 278 (489)
....+... +.+++|+|||+.|++++.|+
T Consensus 149 ~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 228 (723)
T 1xfd_A 149 VVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSI 228 (723)
T ss_dssp EECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEE
T ss_pred EecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCee
Confidence 33333332 37899999999999887543
Q ss_pred eEEEEEcCCCcccceeecC------CccCCCCeeEEEeCCCCcceeecc-c-----cc-----------e---ee-ccce
Q 037120 279 SIYLWDLRGGRTSAPFHNH------KEVCHLPLTSLKLASMLEKIGTLK-A-----QS-----------K---IV-SQEI 331 (489)
Q Consensus 279 ~i~lwd~~~~~~~~~~~~~------~~~~~~~v~~l~~~~~~~~i~~~~-~-----~~-----------~---~~-~~~i 331 (489)
.|++||+.+++....+..+ ... +.+++|+|||+.++... . .. . .. ...+
T Consensus 229 ~l~~~d~~~~~~~~~l~~~~~~~~~~~~----~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~ 304 (723)
T 1xfd_A 229 SLHVIGLNGPTHDLEMMPPDDPRMREYY----ITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWL 304 (723)
T ss_dssp EEEEEESSSSCCCEECCCCCCGGGSSEE----EEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCC
T ss_pred EEEEEECCCCceeEEeeCCccCCCccce----eEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEE
Confidence 8999999988765555543 334 89999999998773211 0 00 0 00 1112
Q ss_pred ----eEEEeCCCCCeEEEE-EecCC----ceEEEEee--cccee-eecCCCCCCcCCCCccccccCC-CcceeecCCcEE
Q 037120 332 ----HSIDLDPSCSYQLAF-HLDDG----WSGVLDVY--NSRVS-HVHCPPPAWLSDSNNSADQLHL-RKPSWLSTNSIY 398 (489)
Q Consensus 332 ----~~~~~~p~~~~~~~~-~~~~~----w~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 398 (489)
..+.|+|+++.++.. ...++ +..++... .+... ... ..... . ... ..+.|+|+|..+
T Consensus 305 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~----~l~~~-~-----~~~~~~~~~spdg~~l 374 (723)
T 1xfd_A 305 HRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQ----SITSG-D-----WDVTKILAYDEKGNKI 374 (723)
T ss_dssp CCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCC----BSCCS-S-----SCEEEEEEEETTTTEE
T ss_pred eccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcccee----EeecC-C-----eEEEeeeEEcCCCCEE
Confidence 267899999988765 44443 33332221 11110 000 00000 0 011 125799999888
Q ss_pred EEeecCC--CcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEec
Q 037120 399 AVGSSSD--HGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAG 466 (489)
Q Consensus 399 l~sgs~d--~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sg 466 (489)
++++..+ +.++||++..... .....+. ....|...+..++|+|+++.|+..
T Consensus 375 ~~~~~~~~~~~~~l~~~~~~~~--------~~~~~l~---------~~~~~~~~~~~~~~spdg~~l~~~ 427 (723)
T 1xfd_A 375 YFLSTEDLPRRRQLYSANTVGN--------FNRQCLS---------CDLVENCTYFSASFSHSMDFFLLK 427 (723)
T ss_dssp EEEESSSCTTCCEEEEECSSTT--------CCCBCSS---------TTSSSSCCCCEEEECTTSSEEEEE
T ss_pred EEEEcCCCCcceEEEEEeCCCC--------CCcceec---------ccccCCCCeEEEEECCCCCEEEEE
Confidence 8777777 8899999875400 0111222 000266778999999999876653
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-20 Score=181.29 Aligned_cols=187 Identities=12% Similarity=0.074 Sum_probs=129.1
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCccc-ccc-cccCCCCCCceeEEEeeCCCCCEEE--
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKED-QSK-HLLHIPLPQQLDAVRWNLANQDEVA-- 172 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~-~~~-~~~h~~~~~~V~~v~~~~~~~~~l~-- 172 (489)
..++.+++++++.+|++|+.|+ ++||+........... ........ ... ...+.. .|.+++|+|++..+++
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~v~~l~~spdg~~lav~~ 111 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPG-DDPNKIVDKVQGLLVPMKF---PIHHLALSCDNLTLSACM 111 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTT-CCTTCEEECCCCEEECCSS---CEEEEEECTTSCEEEEEE
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccc-cCcccccccCccccccCCC---cccEEEEcCCCCEEEEEE
Confidence 4589999999999999999998 8998765421111000 00000000 000 011222 3999999999874443
Q ss_pred -EEecCCCEEEEEEeccCCCC---CceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCc
Q 037120 173 -CASTRSNVVSIYDIGYISDE---PVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPS 248 (489)
Q Consensus 173 -s~~~d~g~i~vwd~~~~~~~---~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 248 (489)
+++.| ++|+|||+...... ....+.. ...+.+|...|++++|+|++.++|++++.||+|++||++++. .
T Consensus 112 ~sgs~d-~~v~iwd~~~~~~~~~~~~~~~~~----~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~--~ 184 (434)
T 2oit_A 112 MSSEYG-SIIAFFDVRTFSNEAKQQKRPFAY----HKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETV--K 184 (434)
T ss_dssp EETTTE-EEEEEEEHHHHHCTTCSSCCCSEE----EECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSE--E
T ss_pred eccCCC-ceEEEEEccccccCCcCCcceeee----eeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCc--c
Confidence 67777 99999999543110 0011111 223478999999999999854499999999999999999874 3
Q ss_pred eeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeec
Q 037120 249 LELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
.....+|...|.+++|+|+|++|++|+.||+|++||++ ++....+..
T Consensus 185 ~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~ 231 (434)
T 2oit_A 185 VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPC 231 (434)
T ss_dssp EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECC
T ss_pred eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccC
Confidence 33445788999999999999999999999999999998 554444443
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-18 Score=175.86 Aligned_cols=310 Identities=12% Similarity=0.044 Sum_probs=184.1
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeC--CCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeC----CCCCEEE
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDF--ESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNL----ANQDEVA 172 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~--~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~----~~~~~l~ 172 (489)
+.+++|+|+|++|++++.|+.|++||+ .+.+.... + . + +..+..++|+| +++.+++
T Consensus 181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~--------i------~-~---g~~p~~va~sp~~~~dg~~l~v 242 (543)
T 1nir_A 181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE--------I------K-I---GIEARSVESSKFKGYEDRYTIA 242 (543)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE--------E------E-C---CSEEEEEEECCSTTCTTTEEEE
T ss_pred cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEE--------E------e-c---CCCcceEEeCCCcCCCCCEEEE
Confidence 889999999999999999999999999 55433321 1 1 1 12278899999 9874444
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecC---Ccc-cCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCc
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGS---DVQ-KGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPS 248 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~h~-~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 248 (489)
+...+ ++|.+||.... +.+......-.... -|. ..+.++.++|++..++++...++.|.+||+.+.+...
T Consensus 243 ~~~~~-~~v~v~D~~t~-----~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~ 316 (543)
T 1nir_A 243 GAYWP-PQFAIMDGETL-----EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT 316 (543)
T ss_dssp EEEES-SEEEEEETTTC-----CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE
T ss_pred EEccC-CeEEEEecccc-----ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce
Confidence 44345 99999998432 22221111000000 133 3789999999988677888899999999998865322
Q ss_pred eeeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCC-Ccceeecccccee
Q 037120 249 LELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASM-LEKIGTLKAQSKI 326 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~-~~~i~~~~~~~~~ 326 (489)
+..+ .+...+..++|+|+|+++++++. +++|.+||+.+++++..+......+......+ ++|+ +..+++...
T Consensus 317 ~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~---- 390 (543)
T 1nir_A 317 VTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHL---- 390 (543)
T ss_dssp EEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBS----
T ss_pred eEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccC----
Confidence 2122 45567889999999998887765 89999999999998777764221100002222 3555 333332100
Q ss_pred eccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEee--c-
Q 037120 327 VSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGS--S- 403 (489)
Q Consensus 327 ~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg--s- 403 (489)
....|.-+...+.+. .+..|. ++....++... ...+.++|++..+.++. .
T Consensus 391 ~d~~V~v~d~~~~~~------~~~~~~-~v~~l~~~g~~--------------------~~~v~~~pdg~~l~v~~~~~~ 443 (543)
T 1nir_A 391 GDGSISLIGTDPKNH------PQYAWK-KVAELQGQGGG--------------------SLFIKTHPKSSHLYVDTTFNP 443 (543)
T ss_dssp SSSEEEEEECCTTTC------TTTBTS-EEEEEECSCSC--------------------CCCEECCTTCCEEEECCTTCS
T ss_pred CCceEEEEEeCCCCC------chhcCe-EEEEEEcCCCC--------------------ceEEEcCCCCCcEEEecCCCC
Confidence 001112222211100 000132 11111111111 12244556655555442 1
Q ss_pred ---CCCcEEEEeccCCCCCCeeeccCccc-chhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEec-----cCcceeEE
Q 037120 404 ---SDHGIHLLDFFPGSSSPSHVDYNEDI-ESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAG-----TKNSSLLV 474 (489)
Q Consensus 404 ---~d~~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sg-----s~dg~i~v 474 (489)
.+++|.|||+.+. +.. ..+... .+.. .-.+...|..++|+|++..+..+ +.++.|.|
T Consensus 444 ~~~~~~~v~v~d~~~~----------~~~~~~~~v~-~~~~---~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v 509 (543)
T 1nir_A 444 DARISQSVAVFDLKNL----------DAKYQVLPIA-EWAD---LGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVV 509 (543)
T ss_dssp SHHHHTCEEEEETTCT----------TSCCEEECHH-HHHC---CCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEE
T ss_pred CcccCceEEEEECCCC----------CCCeEEeech-hhcc---cCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEE
Confidence 2679999999988 443 222110 0000 00456789999999999977755 35899999
Q ss_pred Eeccc
Q 037120 475 VSQKQ 479 (489)
Q Consensus 475 ~~~~~ 479 (489)
|..+.
T Consensus 510 ~D~~t 514 (543)
T 1nir_A 510 VDDKT 514 (543)
T ss_dssp EETTT
T ss_pred EECCC
Confidence 98765
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.5e-19 Score=170.01 Aligned_cols=288 Identities=8% Similarity=0.018 Sum_probs=165.6
Q ss_pred cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEecc
Q 037120 109 IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGY 188 (489)
Q Consensus 109 ~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~ 188 (489)
.++++++.|+.|++||+.... .... .....|... +.+++|+|++..+++++..+ +.|.+|++..
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~-----------~~~~-~~~~~~~~~---~~~~~~spdg~~l~~~~~~~-~~v~~~~~~~ 69 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEG-----------ALTL-TQVVDVPGQ---VQPMVVSPDKRYLYVGVRPE-FRVLAYRIAP 69 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTS-----------CEEE-EEEEECSSC---CCCEEECTTSSEEEEEETTT-TEEEEEEECT
T ss_pred EEEEeCCCCCeEEEEEECCCC-----------cEEE-eeeEecCCC---CceEEECCCCCEEEEeecCC-CeEEEEEecC
Confidence 344555789999999996311 0000 001123333 67799999987555555533 8999999952
Q ss_pred CCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCc-CceeeccCCCCceeEEEEee
Q 037120 189 ISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THGVVNIWDRRVGVL-PSLELSTGSHGTLNSIQLHA 266 (489)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~-~~~~~~~~h~~~v~~~~~~p 266 (489)
.... +.....+ ..+. .+..++|+|+++ .|++++ .++.|.+||+..+.. ....... ....+.+++|+|
T Consensus 70 ~~~~----~~~~~~~----~~~~-~~~~~~~s~dg~-~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~ 138 (343)
T 1ri6_A 70 DDGA----LTFAAES----ALPG-SLTHISTDHQGQ-FVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISP 138 (343)
T ss_dssp TTCC----EEEEEEE----ECSS-CCSEEEECTTSS-EEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECT
T ss_pred CCCc----eeecccc----ccCC-CCcEEEEcCCCC-EEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECC
Confidence 2111 1111111 2222 788999999999 665555 588999999953221 1333332 334688999999
Q ss_pred cCCEEEEEe-CCCeEEEEEcCC-Ccccc----eeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCC
Q 037120 267 ENQIIFAAG-KHGSIYLWDLRG-GRTSA----PFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSC 340 (489)
Q Consensus 267 ~~~~l~~~~-~dg~i~lwd~~~-~~~~~----~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~ 340 (489)
+++++++++ .++.|++||+.+ ++... .+..+.+ ..+..++|+|+++.+.
T Consensus 139 dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~pdg~~l~---------------------- 193 (343)
T 1ri6_A 139 DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG---AGPRHMVFHPNEQYAY---------------------- 193 (343)
T ss_dssp TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT---CCEEEEEECTTSSEEE----------------------
T ss_pred CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC---CCcceEEECCCCCEEE----------------------
Confidence 999988888 699999999987 54321 2222111 1255666666665442
Q ss_pred CeEEEEEecCCceEEEEee--cccee---eecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccC
Q 037120 341 SYQLAFHLDDGWSGVLDVY--NSRVS---HVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFP 415 (489)
Q Consensus 341 ~~~~~~~~~~~w~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~ 415 (489)
+....++-..+++.. .+... .....+..+... .....++|+|++..+++++..|+.|++||+..
T Consensus 194 ----~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~-------~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 194 ----CVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDT-------RWAADIHITPDGRHLYACDRTASLITVFSVSE 262 (343)
T ss_dssp ----EEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSC-------CCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred ----EEeCCCCEEEEEEecCCCCcEEEEeeccccCcccccc-------CCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence 222111111122211 01000 000010011000 11124678888888888888999999999983
Q ss_pred CCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEecc-CcceeEEEecc
Q 037120 416 GSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGT-KNSSLLVVSQK 478 (489)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs-~dg~i~v~~~~ 478 (489)
..... +.+..+. .+. .+.+++|+|+++.|++++ .++.+.||...
T Consensus 263 ~~~~~------~~~~~~~------------~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 263 DGSVL------SKEGFQP------------TET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp TSCCE------EEEEEEE------------CSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CCCce------EEeeeec------------CCC-ccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 20000 2222222 233 388999999999777666 68999999543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-19 Score=167.86 Aligned_cols=174 Identities=12% Similarity=0.072 Sum_probs=115.5
Q ss_pred CCCceeEEEECCCCcEEEEEecCCeEEEEeCCC-cccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFES-LYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~-~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
+...|.+++|+|+|++|++++ ++.|.+||+.+ ...... . ..|. ...|.+++|+|++..++++
T Consensus 40 ~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~--------~------~~~~--~~~~~~~~~spdg~~l~~~ 102 (297)
T 2ojh_A 40 TPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV--------D------TGFA--TICNNDHGISPDGALYAIS 102 (297)
T ss_dssp ESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC--------C------CTTC--CCBCSCCEECTTSSEEEEE
T ss_pred CCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe--------c------cccc--cccccceEECCCCCEEEEE
Confidence 456699999999999999987 78999999987 544331 1 1111 1127789999999744444
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST 253 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 253 (489)
....++.+.||.+....... .. +. +...+..++|+|+++.++++++.|+.++||++..... ....+.
T Consensus 103 ~~~~~~~~~l~~~~~~~~~~-------~~----~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~-~~~~~~ 169 (297)
T 2ojh_A 103 DKVEFGKSAIYLLPSTGGTP-------RL----MT-KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSG-VETRLT 169 (297)
T ss_dssp ECTTTSSCEEEEEETTCCCC-------EE----CC-SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTC-CEEECC
T ss_pred EeCCCCcceEEEEECCCCce-------EE----ee-cCCCccceEECCCCCEEEEEECCCCceEEEEEECCCC-cceEcc
Confidence 42212456666653222111 11 12 2224888999999993444788899999998654222 233455
Q ss_pred CCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcC-CCcccceeecCC
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLR-GGRTSAPFHNHK 298 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~-~~~~~~~~~~~~ 298 (489)
.|...+.+++|+|+++++++++. ++.+++|++. .+..+..+..+.
T Consensus 170 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 216 (297)
T 2ojh_A 170 HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSA 216 (297)
T ss_dssp CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCS
T ss_pred cCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCC
Confidence 67788999999999998887775 9999999986 344444444443
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.84 E-value=7.5e-19 Score=166.12 Aligned_cols=292 Identities=8% Similarity=0.029 Sum_probs=172.4
Q ss_pred EECCCCc-EEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEE
Q 037120 103 DFDCKGI-YLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVV 181 (489)
Q Consensus 103 ~fs~~g~-~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i 181 (489)
.|++++. .+++++.++.|.+||..+.+.... . ..+... + +++|+|++..+++++..+ +.|
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~--------~------~~~~~~---~-~~~~s~dg~~l~~~~~~~-~~i 64 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ--------I------TLGYDF---V-DTAITSDCSNVVVTSDFC-QTL 64 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTCCEEEE--------E------ECCCCE---E-EEEECSSSCEEEEEESTT-CEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcccceeee--------E------EccCCc---c-eEEEcCCCCEEEEEeCCC-CeE
Confidence 3566554 477888899999999988544331 1 111122 5 799999997555555556 899
Q ss_pred EEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCC---cEEEEECCCCCcCceeeccCCCCc
Q 037120 182 SIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG---VVNIWDRRVGVLPSLELSTGSHGT 258 (489)
Q Consensus 182 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~h~~~ 258 (489)
.+||+..... .... +..+.....+++|+|+++ +++++..++ .|.+||+.+++ .+..+.. ...
T Consensus 65 ~~~d~~~~~~----~~~~-------~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~i~v~d~~~~~--~~~~~~~-~~~ 129 (331)
T 3u4y_A 65 VQIETQLEPP----KVVA-------IQEGQSSMADVDITPDDQ-FAVTVTGLNHPFNMQSYSFLKNK--FISTIPI-PYD 129 (331)
T ss_dssp EEEECSSSSC----EEEE-------EEECSSCCCCEEECTTSS-EEEECCCSSSSCEEEEEETTTTE--EEEEEEC-CTT
T ss_pred EEEECCCCce----eEEe-------cccCCCCccceEECCCCC-EEEEecCCCCcccEEEEECCCCC--eEEEEEC-CCC
Confidence 9999953321 0111 122444555599999999 777555443 89999998876 4444433 345
Q ss_pred eeEEEEeecCCEEEEEeC-CCe-EEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEe
Q 037120 259 LNSIQLHAENQIIFAAGK-HGS-IYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDL 336 (489)
Q Consensus 259 v~~~~~~p~~~~l~~~~~-dg~-i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 336 (489)
..+++|+|+|+++++++. ++. |.+|++.....+..... . . + ........+.|
T Consensus 130 ~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~-~-~----------------~--------~~~~~~~~~~~ 183 (331)
T 3u4y_A 130 AVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQ-E-F----------------I--------SGGTRPFNITF 183 (331)
T ss_dssp EEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEE-E-E----------------E--------CSSSSEEEEEE
T ss_pred ccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCC-c-c----------------c--------cCCCCccceEE
Confidence 689999999997776654 677 99999986433211110 0 0 0 00112244556
Q ss_pred CCCCCeEEEEEecCCceEEEEeeccce---eeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEec
Q 037120 337 DPSCSYQLAFHLDDGWSGVLDVYNSRV---SHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDF 413 (489)
Q Consensus 337 ~p~~~~~~~~~~~~~w~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~ 413 (489)
+|+++++++....++...+++...+.. ...... . .....++|+|+|..++++...++.|.+||.
T Consensus 184 spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~------~-------~~~~~~~~spdg~~l~v~~~~~~~i~~~d~ 250 (331)
T 3u4y_A 184 TPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT------N-------NLPGTIVVSRDGSTVYVLTESTVDVFNFNQ 250 (331)
T ss_dssp CTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC------S-------SCCCCEEECTTSSEEEEECSSEEEEEEEET
T ss_pred CCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC------C-------CCCceEEECCCCCEEEEEEcCCCEEEEEEC
Confidence 666655555444333333444443332 111100 0 122457888998878788778889999999
Q ss_pred cCCCCCCeeeccCcc--cchhhHhhhhcccCCcccCCCceEEEEeeCCCCeE-EeccCcceeEEEecccccc
Q 037120 414 FPGSSSPSHVDYNED--IESLSERTKLKKENRFVPLSEGVTACVTHPLNNTI-VAGTKNSSLLVVSQKQQCT 482 (489)
Q Consensus 414 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i-~sgs~dg~i~v~~~~~~~~ 482 (489)
.++ +. +..+. ....... .....+.+++|+|++..| +++..++.|.||..+.+.+
T Consensus 251 ~~~----------~~~~~~~~~--~~~~~~~---~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~ 307 (331)
T 3u4y_A 251 LSG----------TLSFVKSFG--HGLLIDP---RPLFGANQMALNKTETKLFISANISRELKVFTISGKVV 307 (331)
T ss_dssp TTT----------EEEEEEEEE--CCCCCCC---GGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred CCC----------ceeeecccc--cccccCC---CCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence 887 33 11111 0000000 111123679999999976 4556678999998766543
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4e-19 Score=193.72 Aligned_cols=325 Identities=11% Similarity=0.006 Sum_probs=206.5
Q ss_pred cccCCCceeEEEECCCCcEEEEEecC------CeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCC----CceeEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRS------GCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLP----QQLDAV 161 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~d------g~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~----~~V~~v 161 (489)
+..+...|.+++|||||++||.++.+ ..|.+||+.+..... + ..|.... ..+.++
T Consensus 48 lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~---------l------t~~~~~~~~~~~~~~~~ 112 (1045)
T 1k32_A 48 IVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR---------I------TYFSGKSTGRRMFTDVA 112 (1045)
T ss_dssp EECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE---------C------CCCCEEEETTEECSEEE
T ss_pred eeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEE---------c------ccCCCcccccccccccc
Confidence 34455669999999999999988654 479999998744222 1 2222220 013889
Q ss_pred EeeCCCCCEEEEEecC-----CCEEEEEEeccCCCCC-----ce-------------------------------ee-ee
Q 037120 162 RWNLANQDEVACASTR-----SNVVSIYDIGYISDEP-----VE-------------------------------VL-KT 199 (489)
Q Consensus 162 ~~~~~~~~~l~s~~~d-----~g~i~vwd~~~~~~~~-----~~-------------------------------~~-~~ 199 (489)
+|+|+++ ++++++.+ ...|.+||+..+.... .. +. ..
T Consensus 113 ~~SpDg~-ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~ 191 (1045)
T 1k32_A 113 GFDPDGN-LIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEV 191 (1045)
T ss_dssp EECTTCC-EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEE
T ss_pred cCCCCCE-EEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEEC
Confidence 9999997 77777632 1468888874321100 00 00 00
Q ss_pred ceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCe
Q 037120 200 RRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGS 279 (489)
Q Consensus 200 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~ 279 (489)
.......+.+|...+.++.|+++ . ++++++.|+.+.||++..... ..+.+..|. .+...+|+|+|+.++.+ .++.
T Consensus 192 ~~~~~~~l~~~~~~v~~~~~s~d-~-l~~~~~~dg~~~l~~~~~~g~-~~~~l~~~~-~~~~~~~SpDG~~la~~-~~~~ 266 (1045)
T 1k32_A 192 NSGAFKKIVDMSTHVSSPVIVGH-R-IYFITDIDGFGQIYSTDLDGK-DLRKHTSFT-DYYPRHLNTDGRRILFS-KGGS 266 (1045)
T ss_dssp ETTEEEEEECCSSCCEEEEEETT-E-EEEEECTTSSCEEEEEETTSC-SCEECCCCC-SSCEEEEEESSSCEEEE-ETTE
T ss_pred CCCCeEECcCCCCcccceEEeCC-E-EEEEEeccCceEEEEEeCCCC-cceEecCCC-CcceeeEcCCCCEEEEE-eCCE
Confidence 00011223678889999999987 4 778888899999998764221 223333444 46778999999988877 5899
Q ss_pred EEEEEcCCCcccceeecC-----------CccCCCCeeEEEeC-CCCcceeecccc--------------ceeecc-cee
Q 037120 280 IYLWDLRGGRTSAPFHNH-----------KEVCHLPLTSLKLA-SMLEKIGTLKAQ--------------SKIVSQ-EIH 332 (489)
Q Consensus 280 i~lwd~~~~~~~~~~~~~-----------~~~~~~~v~~l~~~-~~~~~i~~~~~~--------------~~~~~~-~i~ 332 (489)
|++||+.. ..+..+..+ ... +.+++|+ |+|+.++..... ...+.. .+.
T Consensus 267 i~~~d~~~-~~l~~l~~~~~~~~~~~~~~~~~----v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 341 (1045)
T 1k32_A 267 IYIFNPDT-EKIEKIEIGDLESPEDRIISIPS----KFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYV 341 (1045)
T ss_dssp EEEECTTT-CCEEECCCCCCCBCCSEEEECGG----GGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEE
T ss_pred EEEecCCc-eEeeeeccCcccccccccccccc----cceeeecCCCCCEEEEEEcCEEEEEcCCCCceEEccCCCcceEE
Confidence 99999944 334344432 223 8999999 999877532210 111223 677
Q ss_pred EEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEe
Q 037120 333 SIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLD 412 (489)
Q Consensus 333 ~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd 412 (489)
.+.|+ ++..++....+...-.+++...+....+. . . ......++|+|+|.. ++.++.++.|++||
T Consensus 342 ~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~-~------~------~~~~~~~~~SpDG~~-la~~~~~~~v~~~d 406 (1045)
T 1k32_A 342 RRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFE-E------N------LGNVFAMGVDRNGKF-AVVANDRFEIMTVD 406 (1045)
T ss_dssp EECSS-SEEEEEEEETTEEEEEEEETTTCCEEECC-C------C------CCSEEEEEECTTSSE-EEEEETTSEEEEEE
T ss_pred eeeEc-CCCeEEEEECCCceEEEEECCCCCceEec-C------C------ccceeeeEECCCCCE-EEEECCCCeEEEEE
Confidence 88898 88777765542110002232222222211 0 0 012345788888654 55667899999999
Q ss_pred ccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcc----------eeEEEeccc
Q 037120 413 FFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNS----------SLLVVSQKQ 479 (489)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg----------~i~v~~~~~ 479 (489)
+.++ +....+. +|.+.|.+++|+|++++|++++.++ .|.+|..+.
T Consensus 407 ~~tg----------~~~~~~~------------~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~ 461 (1045)
T 1k32_A 407 LETG----------KPTVIER------------SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG 461 (1045)
T ss_dssp TTTC----------CEEEEEE------------CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT
T ss_pred CCCC----------ceEEecc------------CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCC
Confidence 9988 6655555 7888999999999999999887654 899997654
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3.2e-18 Score=179.10 Aligned_cols=293 Identities=14% Similarity=0.095 Sum_probs=173.5
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..|.+++|+|| ..++.+. ++.|++||+.+.+... ...+... +.+++|+|+++ .|+.+.
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~---------------l~~~~~~---~~~~~~SpdG~-~la~~~- 139 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTY---------------LFDTNEE---TASLDFSPVGD-RVAYVR- 139 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEE---------------EECCTTC---CTTCEECTTSS-EEEEEE-
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEE---------------ccCCccc---ccCCcCCCCCC-EEEEEE-
Confidence 45999999999 5555553 5999999998743322 1112223 66699999997 555554
Q ss_pred CCCEEEEEEecc-----CCCCCceeeeeceeeee----ecCCcccCeeEEEEecCCCcEEEEEe----------------
Q 037120 177 RSNVVSIYDIGY-----ISDEPVEVLKTRRSVTV----VGSDVQKGLSDLAFSAVNTSRLIASD---------------- 231 (489)
Q Consensus 177 d~g~i~vwd~~~-----~~~~~~~~~~~~~~~~~----~~~~h~~~v~~~~~~~~~~~~l~s~s---------------- 231 (489)
+ +.|.+||+.. +. ............. ....+...+.+++|+|||+ .|++++
T Consensus 140 ~-~~i~v~~~~~~~~~~g~--~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~-~la~~~~d~~~~~~~~~~~~~~ 215 (706)
T 2z3z_A 140 N-HNLYIARGGKLGEGMSR--AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGS-CLAFYRMDQSMVKPTPIVDYHP 215 (706)
T ss_dssp T-TEEEEEECBCTTSCCCC--CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSS-EEEEEEEECTTSCCEEEEECCS
T ss_pred C-CeEEEEecCcccccCCC--cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCC-EEEEEEECCCCCceEEeeccCC
Confidence 4 9999999954 21 1111100000000 0011122358899999999 888877
Q ss_pred -----------------CCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCC-----eEEEEEcCCCc
Q 037120 232 -----------------THGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHG-----SIYLWDLRGGR 289 (489)
Q Consensus 232 -----------------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg-----~i~lwd~~~~~ 289 (489)
.+..|++||+.+++...+.....|...+.+++|+|+|+.|++++.++ .|++||+.+++
T Consensus 216 ~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~ 295 (706)
T 2z3z_A 216 LEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGR 295 (706)
T ss_dssp SSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCC
T ss_pred CCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCc
Confidence 44689999998875222211225677899999999999999887765 99999999884
Q ss_pred ccceee-c-CCccCCCCeeEEEeCC--CCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEee-cccee
Q 037120 290 TSAPFH-N-HKEVCHLPLTSLKLAS--MLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVY-NSRVS 364 (489)
Q Consensus 290 ~~~~~~-~-~~~~~~~~v~~l~~~~--~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~-~~~~~ 364 (489)
....+. . +... ..++.++.|+| +|+++. +.. .+++..++... .+...
T Consensus 296 ~~~~~~~~~~~~~-~~~~~~~~~sp~~dg~~l~--------------------------~~~-~~g~~~l~~~~~~~~~~ 347 (706)
T 2z3z_A 296 FVRTLFVETDKHY-VEPLHPLTFLPGSNNQFIW--------------------------QSR-RDGWNHLYLYDTTGRLI 347 (706)
T ss_dssp EEEEEEEEECSSC-CCCCSCCEECTTCSSEEEE--------------------------EEC-TTSSCEEEEEETTSCEE
T ss_pred eeeEEEEccCCCe-ECccCCceeecCCCCEEEE--------------------------EEc-cCCccEEEEEECCCCEE
Confidence 333322 1 1111 01134455555 554332 211 11222222221 11111
Q ss_pred eecCCCCCCcCCCCccccccCCCc-ceeecCCcEEEEeecCCC----cEEEEeccCCCCCCeeeccCcccchhhHhhhhc
Q 037120 365 HVHCPPPAWLSDSNNSADQLHLRK-PSWLSTNSIYAVGSSSDH----GIHLLDFFPGSSSPSHVDYNEDIESLSERTKLK 439 (489)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~sgs~d~----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (489)
..... .. ..+.. +.|+|++..++++++.++ .|+.||+.++ + ...+
T Consensus 348 ~~l~~-~~-----------~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~----------~-~~~l------- 397 (706)
T 2z3z_A 348 RQVTK-GE-----------WEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG----------K-TKDL------- 397 (706)
T ss_dssp EECCC-SS-----------SCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC----------C-CEES-------
T ss_pred EecCC-CC-----------eEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC----------C-ceec-------
Confidence 10000 00 01111 578888888888887776 6677776665 3 2222
Q ss_pred ccCCcccCCCceEEEEeeCCCCeEEeccCc----ceeEEEeccc
Q 037120 440 KENRFVPLSEGVTACVTHPLNNTIVAGTKN----SSLLVVSQKQ 479 (489)
Q Consensus 440 ~~~~~~~h~~~V~~va~~p~~~~i~sgs~d----g~i~v~~~~~ 479 (489)
.|...+.+++|+|+++.|+....+ +.|.+|..+.
T Consensus 398 ------~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 398 ------TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp ------CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred ------cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence 366779999999999988766433 5688886544
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.8e-18 Score=160.73 Aligned_cols=168 Identities=13% Similarity=0.079 Sum_probs=108.5
Q ss_pred CceeEEEECCCCcEEEEEec---CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 97 PGISALDFDCKGIYLVSATR---SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~---dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
..+..++|+|+|+ |++++. ++.|.+|++.+..... ......+... +..++|+|+++.++++
T Consensus 40 ~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~------------~~~~~~~~~~---p~~~a~spdg~~l~~~ 103 (347)
T 3hfq_A 40 QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHK------------LNTVVAPGTP---PAYVAVDEARQLVYSA 103 (347)
T ss_dssp SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEE------------EEEEEEESCC---CSEEEEETTTTEEEEE
T ss_pred CCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEE------------eeeeecCCCC---CEEEEECCCCCEEEEE
Confidence 4577899999999 554443 6899999996533211 0111122333 6779999999745544
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecC-----CcccCeeEEEEecCCCcEEEEEeCCCcEEEEECC-CCCcC
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGS-----DVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRR-VGVLP 247 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~ 247 (489)
...+ +.|.+||+.... ....+.... .... .+...+.+++|+|+++ ++++...++.|.+||+. .++..
T Consensus 104 ~~~~-~~v~v~~~~~~g--~~~~~~~~~---~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~ 176 (347)
T 3hfq_A 104 NYHK-GTAEVMKIAADG--ALTLTDTVQ---HSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLS 176 (347)
T ss_dssp ETTT-TEEEEEEECTTS--CEEEEEEEE---CCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEE
T ss_pred eCCC-CEEEEEEeCCCC--Ceeecceee---cCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEE
Confidence 4355 999999994321 111111111 0000 1234588999999999 88888889999999998 33321
Q ss_pred ceeecc-CCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCC
Q 037120 248 SLELST-GSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRG 287 (489)
Q Consensus 248 ~~~~~~-~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~ 287 (489)
...... .....+..++|+|+|+++++++. ++.|++||+..
T Consensus 177 ~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~ 218 (347)
T 3hfq_A 177 EQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDT 218 (347)
T ss_dssp EEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 111111 22346788999999997777655 89999999874
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-17 Score=156.55 Aligned_cols=254 Identities=8% Similarity=0.022 Sum_probs=152.5
Q ss_pred CceeEEEECCCCcEEEEEec-CCeEEEEeCCCccc-ccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 97 PGISALDFDCKGIYLVSATR-SGCLTVHDFESLYY-QCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~-dg~i~vwd~~~~~~-~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
..+ +++|+|+|++|++++. ++.|.+||..+... .. ....+... +.+++|+|++..++ ++
T Consensus 41 ~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~--------------~~~~~~~~---~~~~~~s~dg~~l~-~~ 101 (331)
T 3u4y_A 41 DFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVV--------------AIQEGQSS---MADVDITPDDQFAV-TV 101 (331)
T ss_dssp CEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEE--------------EEEECSSC---CCCEEECTTSSEEE-EC
T ss_pred Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEE--------------ecccCCCC---ccceEECCCCCEEE-Ee
Confidence 346 9999999997766665 89999999987443 11 11122222 33499999987444 44
Q ss_pred ecCCC--EEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCc-EEEEECCCCCcCc-e-
Q 037120 175 STRSN--VVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGV-VNIWDRRVGVLPS-L- 249 (489)
Q Consensus 175 ~~d~g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~-~- 249 (489)
..+++ .|.+||+... ..+... . +.....+++|+|+++.++++...++. |.+|++....... .
T Consensus 102 ~~~~~~~~i~v~d~~~~-----~~~~~~-------~-~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~ 168 (331)
T 3u4y_A 102 TGLNHPFNMQSYSFLKN-----KFISTI-------P-IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG 168 (331)
T ss_dssp CCSSSSCEEEEEETTTT-----EEEEEE-------E-CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE
T ss_pred cCCCCcccEEEEECCCC-----CeEEEE-------E-CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC
Confidence 43313 9999999432 222211 1 22356899999999855566667788 9999998643210 0
Q ss_pred eeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcc---cceeecCCccCCCCeeEEEeCCCCcceeeccccce
Q 037120 250 ELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRT---SAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSK 325 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~---~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~ 325 (489)
............++|+|+|+++++++. ++.|++||+.+++. +..+... .. +..++|+|+|+.+......
T Consensus 169 ~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~----~~~~~~spdg~~l~v~~~~-- 241 (331)
T 3u4y_A 169 QEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NL----PGTIVVSRDGSTVYVLTES-- 241 (331)
T ss_dssp EEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SC----CCCEEECTTSSEEEEECSS--
T ss_pred CccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CC----CceEEECCCCCEEEEEEcC--
Confidence 111133456789999999997777665 89999999999887 5555542 23 6677788877754321100
Q ss_pred eeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCC
Q 037120 326 IVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSD 405 (489)
Q Consensus 326 ~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d 405 (489)
...|. +++..++....+......+..... .......++|+|++..+++++..+
T Consensus 242 --~~~i~----------------------~~d~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~spdg~~l~v~~~~~ 294 (331)
T 3u4y_A 242 --TVDVF----------------------NFNQLSGTLSFVKSFGHGLLIDPR---PLFGANQMALNKTETKLFISANIS 294 (331)
T ss_dssp --EEEEE----------------------EEETTTTEEEEEEEEECCCCCCCG---GGTTCCCEEECTTSSEEEEEETTT
T ss_pred --CCEEE----------------------EEECCCCceeeecccccccccCCC---CcccccceEECCCCCEEEEecCCC
Confidence 00011 111111111000000000000000 000012368899988888888888
Q ss_pred CcEEEEeccCC
Q 037120 406 HGIHLLDFFPG 416 (489)
Q Consensus 406 ~~i~vwd~~~~ 416 (489)
+.|.|||+...
T Consensus 295 ~~v~v~d~~~~ 305 (331)
T 3u4y_A 295 RELKVFTISGK 305 (331)
T ss_dssp TEEEEEETTSC
T ss_pred CcEEEEEecCC
Confidence 99999999876
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-18 Score=164.20 Aligned_cols=296 Identities=9% Similarity=-0.023 Sum_probs=174.9
Q ss_pred cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCC-CCCceeEEEeeCCCCCEEEEEecCCCEEEEEEec
Q 037120 109 IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIP-LPQQLDAVRWNLANQDEVACASTRSNVVSIYDIG 187 (489)
Q Consensus 109 ~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~-~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~ 187 (489)
++|++++.++.|.+||..+.+.... .. ..+.. . +..++|+|++..+++++..+ +.|.+||+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~--------~~-----~~~~~~~---~~~~~~s~dg~~l~v~~~~~-~~v~~~d~~ 64 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKV--------IT-----IADAGPT---PMVPMVAPGGRIAYATVNKS-ESLVKIDLV 64 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEE--------EE-----CTTCTTC---CCCEEECTTSSEEEEEETTT-TEEEEEETT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEE--------EE-----cCCCCCC---ccceEEcCCCCEEEEEeCCC-CeEEEEECC
Confidence 5789999999999999988544331 00 01100 1 55699999997666777666 999999994
Q ss_pred cCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe------------CCCcEEEEECCCCCcCceeeccCC
Q 037120 188 YISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD------------THGVVNIWDRRVGVLPSLELSTGS 255 (489)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~~~h 255 (489)
.. ..+...... ....|...+..++|+|+++ .+++++ .++.|.+||+.+++ ....+..
T Consensus 65 ~~-----~~~~~~~~~--~~~~~~~~~~~~~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~--~~~~~~~- 133 (337)
T 1pby_B 65 TG-----ETLGRIDLS--TPEERVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLS--RRKAFEA- 133 (337)
T ss_dssp TC-----CEEEEEECC--BTTEEEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTE--EEEEEEC-
T ss_pred CC-----CeEeeEEcC--CcccccccccceEECCCCC-EEEEEecccccccccccccCceEEEEECCCCc--EEEEEeC-
Confidence 32 221111100 0011233677899999998 777775 57999999998765 3333322
Q ss_pred CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEE
Q 037120 256 HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSID 335 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~ 335 (489)
...+.+++|+|++++++++ ++.|++||+.+++.+..+..+... . .+.|+|++..+.......... ..+....
T Consensus 134 ~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~--~---~~~~s~dg~~l~~~~~~~~~~-~~~~~~~ 205 (337)
T 1pby_B 134 PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE--A---ETYAQPDVLAVWNQHESSGVM-ATPFYTA 205 (337)
T ss_dssp CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT--T---TTBCCCBCCCCCCCCTTTTEE-EEEEEEE
T ss_pred CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC--C---CceeCCCccEEeeeccCCCce-eeeeecc
Confidence 4567889999999988888 689999999998877666543311 1 226788887653211000000 0001111
Q ss_pred eCCCCCeEEEEEecCCce-EEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEecc
Q 037120 336 LDPSCSYQLAFHLDDGWS-GVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFF 414 (489)
Q Consensus 336 ~~p~~~~~~~~~~~~~w~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~ 414 (489)
...++..... ...+. .+++...+...... +.... .....++|+|++..++++ ++.|++||+.
T Consensus 206 ~~~~~~~~~~---~~~~~v~~~d~~~~~~~~~~-----~~~~~------~~~~~~~~s~dg~~l~~~---~~~v~~~d~~ 268 (337)
T 1pby_B 206 RKDIDPADPT---AYRTGLLTMDLETGEMAMRE-----VRIMD------VFYFSTAVNPAKTRAFGA---YNVLESFDLE 268 (337)
T ss_dssp BTTSCTTSGG---GEEEEEEEEETTTCCEEEEE-----EEECS------SCEEEEEECTTSSEEEEE---ESEEEEEETT
T ss_pred cccccccccc---ccccceEEEeCCCCCceEee-----cCCCC------CceeeEEECCCCCEEEEe---CCeEEEEECC
Confidence 1111000000 00000 12222222111000 00000 011235677776665555 7999999998
Q ss_pred CCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccc
Q 037120 415 PGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
++ +.+..+. ....+.+++|+|+++.|++++.++.|.+|..+..
T Consensus 269 ~~----------~~~~~~~-------------~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 269 KN----------ASIKRVP-------------LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp TT----------EEEEEEE-------------CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred CC----------cCcceec-------------CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence 87 5554443 3346789999999998888899999999986543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.81 E-value=4.3e-18 Score=166.15 Aligned_cols=186 Identities=11% Similarity=0.005 Sum_probs=138.7
Q ss_pred ccCCCceeEEEECCCCcEEEEEecCC---eEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCC
Q 037120 93 SFGKPGISALDFDCKGIYLVSATRSG---CLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQD 169 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~~la~g~~dg---~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~ 169 (489)
..+...|.+++|+|+|++||+++.++ .|++||+.+.+... +..|... +.+++|+|+++.
T Consensus 175 ~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~---------------l~~~~~~---~~~~~~spdg~~ 236 (415)
T 2hqs_A 175 HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ---------------VASFPRH---NGAPAFSPDGSK 236 (415)
T ss_dssp EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE---------------EECCSSC---EEEEEECTTSSE
T ss_pred eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE---------------eecCCCc---ccCEEEcCCCCE
Confidence 34556799999999999999999885 99999998744322 1223333 889999999986
Q ss_pred EEEEEecC-CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeC-CC--cEEEEECCCCC
Q 037120 170 EVACASTR-SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT-HG--VVNIWDRRVGV 245 (489)
Q Consensus 170 ~l~s~~~d-~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~-dg--~i~iwd~~~~~ 245 (489)
++++++.+ +..|.+||+... .. ..+..|...+.+++|+|+++ .|++++. ++ .|++||+.+++
T Consensus 237 la~~~~~~g~~~i~~~d~~~~-----~~--------~~l~~~~~~~~~~~~spdg~-~l~~~s~~~g~~~i~~~d~~~~~ 302 (415)
T 2hqs_A 237 LAFALSKTGSLNLYVMDLASG-----QI--------RQVTDGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGGA 302 (415)
T ss_dssp EEEEECTTSSCEEEEEETTTC-----CE--------EECCCCSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSC
T ss_pred EEEEEecCCCceEEEEECCCC-----CE--------EeCcCCCCcccceEECCCCC-EEEEEECCCCCcEEEEEECCCCC
Confidence 66577654 145999998432 11 12356778999999999999 7777775 45 67788988765
Q ss_pred cCceeeccCCCCceeEEEEeecCCEEEEEeCC---CeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceee
Q 037120 246 LPSLELSTGSHGTLNSIQLHAENQIIFAAGKH---GSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 246 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~d---g~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
.. .+..+...+.+++|+|+|++|++++.+ ..|++||+.+++. ..+..+. . +.+++|+|+|+.+..
T Consensus 303 --~~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~----~~~~~~spdg~~l~~ 370 (415)
T 2hqs_A 303 --PQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-L----DETPSLAPNGTMVIY 370 (415)
T ss_dssp --CE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-S----CEEEEECTTSSEEEE
T ss_pred --EE-EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-C----cCCeEEcCCCCEEEE
Confidence 22 344567789999999999999988764 6899999998775 3444433 4 899999999987754
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-17 Score=156.86 Aligned_cols=165 Identities=13% Similarity=0.090 Sum_probs=112.3
Q ss_pred CCCceeEEEECCCCcEEEEEecC-CeEEEEeCC--CcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRS-GCLTVHDFE--SLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~d-g~i~vwd~~--~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+...+.+++|+|+|++|++++.+ +.|.+|++. +..... ......+. . +..++|+|++..++
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~------------~~~~~~~~-~---~~~~~~s~dg~~l~ 99 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTF------------AAESALPG-S---LTHISTDHQGQFVF 99 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE------------EEEEECSS-C---CSEEEECTTSSEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceee------------ccccccCC-C---CcEEEEcCCCCEEE
Confidence 34468899999999999988886 999999997 321111 00111111 2 77899999997555
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCCcEEEEECCC-CCcCce
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THGVVNIWDRRV-GVLPSL 249 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~-~~~~~~ 249 (489)
+++..+ +.|.+||+..+ ......... . ....+.+++|+|+++ .+++++ .++.|++||+.+ ++....
T Consensus 100 ~~~~~~-~~i~~~d~~~~-----~~~~~~~~~----~-~~~~~~~~~~s~dg~-~l~~~~~~~~~v~~~d~~~~~~~~~~ 167 (343)
T 1ri6_A 100 VGSYNA-GNVSVTRLEDG-----LPVGVVDVV----E-GLDGCHSANISPDNR-TLWVPALKQDRICLFTVSDDGHLVAQ 167 (343)
T ss_dssp EEETTT-TEEEEEEEETT-----EEEEEEEEE----C-CCTTBCCCEECTTSS-EEEEEEGGGTEEEEEEECTTSCEEEE
T ss_pred EEecCC-CeEEEEECCCC-----ccccccccc----c-CCCCceEEEECCCCC-EEEEecCCCCEEEEEEecCCCceeee
Confidence 555555 99999999411 111111111 2 223588999999998 666666 899999999987 442111
Q ss_pred ---eeccCCCCceeEEEEeecCCEEEEEe-CCCeEEEEEcCC
Q 037120 250 ---ELSTGSHGTLNSIQLHAENQIIFAAG-KHGSIYLWDLRG 287 (489)
Q Consensus 250 ---~~~~~h~~~v~~~~~~p~~~~l~~~~-~dg~i~lwd~~~ 287 (489)
.........+..++|+|+++++++++ .++.|++||+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~ 209 (343)
T 1ri6_A 168 DPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD 209 (343)
T ss_dssp EEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred cccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 11222345788999999999887776 599999999964
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.4e-18 Score=186.44 Aligned_cols=180 Identities=9% Similarity=0.032 Sum_probs=138.9
Q ss_pred ceeEEEEC-CCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 98 GISALDFD-CKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 98 ~V~~~~fs-~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
.|.+++|+ |+|++||+++ ++.|.+|+........ ...|.. ..+..++|+ ++. .++.++.
T Consensus 297 ~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~---------------~~~~~~--~~~~~~~~s-dg~-~l~~~s~ 356 (1045)
T 1k32_A 297 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK---------------VPEPLR--IRYVRRGGD-TKV-AFIHGTR 356 (1045)
T ss_dssp GGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE---------------CSCCSC--EEEEEECSS-SEE-EEEEEET
T ss_pred ccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE---------------ccCCCc--ceEEeeeEc-CCC-eEEEEEC
Confidence 58999999 9999999988 8899999988743222 112222 028889999 876 5555565
Q ss_pred CCCEEE-EEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCC
Q 037120 177 RSNVVS-IYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGS 255 (489)
Q Consensus 177 d~g~i~-vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h 255 (489)
+ +.+. +||+... . .. .+.+|...+..++|+|+++ .|++++.++.|++||+.+++ .......|
T Consensus 357 ~-~~l~~~~d~~~~--~-------~~----~l~~~~~~~~~~~~SpDG~-~la~~~~~~~v~~~d~~tg~--~~~~~~~~ 419 (1045)
T 1k32_A 357 E-GDFLGIYDYRTG--K-------AE----KFEENLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLETGK--PTVIERSR 419 (1045)
T ss_dssp T-EEEEEEEETTTC--C-------EE----ECCCCCCSEEEEEECTTSS-EEEEEETTSEEEEEETTTCC--EEEEEECS
T ss_pred C-CceEEEEECCCC--C-------ce----EecCCccceeeeEECCCCC-EEEEECCCCeEEEEECCCCc--eEEeccCC
Confidence 5 7888 8888322 1 11 1235777899999999999 99999999999999999877 44445578
Q ss_pred CCceeEEEEeecCCEEEEEeCC----------CeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceee
Q 037120 256 HGTLNSIQLHAENQIIFAAGKH----------GSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~~d----------g~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
...+.+++|+|+|++|++++.+ +.|++||+.+++ +..+..|... +..++|+|+|+.+..
T Consensus 420 ~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~----~~~~~~spdG~~l~~ 488 (1045)
T 1k32_A 420 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSH----DYAPAFDADSKNLYY 488 (1045)
T ss_dssp SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSB----EEEEEECTTSCEEEE
T ss_pred CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcc----cCCceEcCCCCEEEE
Confidence 8899999999999999888764 499999999877 6666666666 889999999987753
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-17 Score=158.70 Aligned_cols=292 Identities=10% Similarity=0.003 Sum_probs=169.1
Q ss_pred EEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCC-CCCCceeEEEeeCCCCCEEEEEecCCC
Q 037120 101 ALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHI-PLPQQLDAVRWNLANQDEVACASTRSN 179 (489)
Q Consensus 101 ~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~-~~~~~V~~v~~~~~~~~~l~s~~~d~g 179 (489)
.+++++++.++++++.++.|++||..+.+.... . ..+. .. +..++|+|++..++++...+ +
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~--------~------~~~~~~~---~~~~~~s~dg~~~~v~~~~~-~ 65 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKS--------C------VMPDKFG---PGTAMMAPDNRTAYVLNNHY-G 65 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEE--------E------ECSSCCS---SCEEEECTTSSEEEEEETTT-T
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEE--------E------ecCCCCC---CceeEECCCCCEEEEEeCCC-C
Confidence 346889999999999999999999988544331 1 1111 12 56799999987566666656 9
Q ss_pred EEEEEEeccCCCCCceeeeeceeeeeecCCc-----ccCeeEEEEecCCCcEEEEEeCC------------CcEEEEECC
Q 037120 180 VVSIYDIGYISDEPVEVLKTRRSVTVVGSDV-----QKGLSDLAFSAVNTSRLIASDTH------------GVVNIWDRR 242 (489)
Q Consensus 180 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~l~s~s~d------------g~i~iwd~~ 242 (489)
.|.+||+... ....... .++ ...+..++|+|+++ ++++++.+ +.|.+||+.
T Consensus 66 ~i~~~d~~t~-----~~~~~~~------~~~~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~i~~~d~~ 133 (349)
T 1jmx_B 66 DIYGIDLDTC-----KNTFHAN------LSSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTA 133 (349)
T ss_dssp EEEEEETTTT-----EEEEEEE------SCCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGG
T ss_pred cEEEEeCCCC-----cEEEEEE------cccccccccccccceEECCCCC-EEEEEcccccccccccccCCCeEEEEECC
Confidence 9999999432 2221111 111 23478899999999 77777755 899999998
Q ss_pred CCCcC-ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeecc
Q 037120 243 VGVLP-SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLK 321 (489)
Q Consensus 243 ~~~~~-~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~ 321 (489)
+++.. .+... .+...+.+++|+|+|+ +++++. .|++||+.+++.+..+..+... .+. .+.++...+-...
T Consensus 134 ~~~~~~~~~~~-~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~ 204 (349)
T 1jmx_B 134 DGLEAKPVRTF-PMPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWN--RKG---YSAPDVLYFWPHQ 204 (349)
T ss_dssp GGGGBCCSEEE-ECCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCC--CTT---BCCCBCCCCCCCC
T ss_pred Cccccceeeec-cCCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccC--Ccc---ccCccceeeecCC
Confidence 75421 22222 2334688999999999 666544 4999999998876665532210 000 0001100000000
Q ss_pred ccceeeccceeEEEeCCCCCeE----------EEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCccee
Q 037120 322 AQSKIVSQEIHSIDLDPSCSYQ----------LAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSW 391 (489)
Q Consensus 322 ~~~~~~~~~i~~~~~~p~~~~~----------~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (489)
... ........+.+++++... +......+-...++... . . .....+++
T Consensus 205 ~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------~-------~~~~~~~~ 262 (349)
T 1jmx_B 205 SPR-HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD-L-------------T-------ELYFTGLR 262 (349)
T ss_dssp CTT-CEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE-C-------------S-------SCEEEEEE
T ss_pred Ccc-eeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccccc-C-------------C-------CcceeeEe
Confidence 000 000011233444333111 00111111111111100 0 0 01123456
Q ss_pred ec-CCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcc
Q 037120 392 LS-TNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNS 470 (489)
Q Consensus 392 ~~-~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg 470 (489)
+| ++..++++ ++.|++||+.++ +.+..+. ....+.+++|+|+++.|++++.++
T Consensus 263 sp~dg~~l~~~---~~~v~~~d~~~~----------~~~~~~~-------------~~~~~~~~~~s~dg~~l~~~~~~~ 316 (349)
T 1jmx_B 263 SPKDPNQIYGV---LNRLAKYDLKQR----------KLIKAAN-------------LDHTYYCVAFDKKGDKLYLGGTFN 316 (349)
T ss_dssp CSSCTTEEEEE---ESEEEEEETTTT----------EEEEEEE-------------CSSCCCEEEECSSSSCEEEESBSS
T ss_pred cCCCCCEEEEE---cCeEEEEECccC----------eEEEEEc-------------CCCCccceEECCCCCEEEEecCCC
Confidence 67 65555444 889999999888 5554443 234578999999999888888899
Q ss_pred eeEEEeccc
Q 037120 471 SLLVVSQKQ 479 (489)
Q Consensus 471 ~i~v~~~~~ 479 (489)
.|.+|..+.
T Consensus 317 ~v~v~d~~~ 325 (349)
T 1jmx_B 317 DLAVFNPDT 325 (349)
T ss_dssp EEEEEETTT
T ss_pred eEEEEeccc
Confidence 999998754
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-18 Score=174.67 Aligned_cols=232 Identities=13% Similarity=0.085 Sum_probs=155.3
Q ss_pred ceeEEEECCCCcEEEEEec-CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 98 GISALDFDCKGIYLVSATR-SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~-dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
.|.+++|+|||++||.++. ||+++||++++..... +..|. ...|.+++|+|+ .+++++..
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~---------------lt~~~--~~~~~~~~~spd--~~l~~~~~ 83 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK---------------LNREP--INSVLDPHYGVG--RVILVRDV 83 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE---------------CCSSC--CSEECEECTTCS--EEEEEEEC
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe---------------eeccc--ccccccccCCCC--eEEEEecc
Confidence 4899999999999999887 9999999986533222 11121 112888999998 47776664
Q ss_pred ---CCCEEEEEEecc--CCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 177 ---RSNVVSIYDIGY--ISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 177 ---d~g~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
+ ....+|.+.. .... ..+ . ....+...+|+|+++..+++.+.++.+.+||+.+++ ..+.
T Consensus 84 ~~g~-~~~~l~~~~~~~~g~~--~~l----------~-~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~--~~~l 147 (582)
T 3o4h_A 84 SKGA-EQHALFKVNTSRPGEE--QRL----------E-AVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGG--LREL 147 (582)
T ss_dssp STTS-CCEEEEEEETTSTTCC--EEC----------T-TSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTE--EEEE
T ss_pred CCCC-cceEEEEEeccCCCcc--ccc----------c-CCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCc--EEEe
Confidence 3 5677877743 2111 111 1 111344668899987555555555566699998875 3322
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCC----CeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceee
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKH----GSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIV 327 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~d----g~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~ 327 (489)
.. +.. .+++|+|||+++++++.| +.|++||+.+++. ..+..+... +..++|+|||+
T Consensus 148 ~~-~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~-~~l~~~~~~----~~~~~~SpDG~------------ 207 (582)
T 3o4h_A 148 AR-LPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL-RVFDSGEGS----FSSASISPGMK------------ 207 (582)
T ss_dssp EE-ESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC-EEECCSSCE----EEEEEECTTSC------------
T ss_pred ec-CCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc-eEeecCCCc----cccceECCCCC------------
Confidence 22 222 889999999999988776 7899999988764 344554444 44444444433
Q ss_pred ccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCC-
Q 037120 328 SQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDH- 406 (489)
Q Consensus 328 ~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~- 406 (489)
.++ ++..++
T Consensus 208 --------------~l~--------------------------------------------------------~~~~~~~ 217 (582)
T 3o4h_A 208 --------------VTA--------------------------------------------------------GLETARE 217 (582)
T ss_dssp --------------EEE--------------------------------------------------------EEECSSC
T ss_pred --------------EEE--------------------------------------------------------EccCCCe
Confidence 222 223444
Q ss_pred -cEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEE--------eeCCCCeEEeccCcceeEEEec
Q 037120 407 -GIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACV--------THPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 407 -~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va--------~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
.|++||+.++ +.. .+. +|...|.+++ |+|++..+++++.||.+.||..
T Consensus 218 ~~i~~~d~~~~----------~~~-~~~------------~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 218 ARLVTVDPRDG----------SVE-DLE------------LPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EEEEEECTTTC----------CEE-ECC------------CSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred eEEEEEcCCCC----------cEE-Ecc------------CCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 7889999877 444 444 5666666666 9999998999999999999986
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-17 Score=173.73 Aligned_cols=288 Identities=14% Similarity=0.059 Sum_probs=166.2
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccc-cCCCCCCCCCcccccccc--------cCCCCCCceeEEEeeCCCCC
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQ-CNGTLPGVGLKEDQSKHL--------LHIPLPQQLDAVRWNLANQD 169 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~-~~~~~~~~g~~~~~~~~~--------~h~~~~~~V~~v~~~~~~~~ 169 (489)
+..+.|. |..+++++.|+ | +||+.+++.. .. +..+.... ........|.+++|+|+ .
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~--------l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~- 93 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT--------RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G- 93 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CE--------EEEHHHHHTTC-----------CCCEEEEETTT-T-
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE--------eechhHhhhhccchhccccccccCceeEEECCC-C-
Confidence 5566787 66777778888 8 9999885541 10 11110000 00001123899999999 5
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCC-----C
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRV-----G 244 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-----~ 244 (489)
.++.+. ++.|++||+..+ .... +..+...+.+++|+|+|+ .|+++ .|+.|++||+.+ +
T Consensus 94 ~~~~~~--~~~i~~~d~~~~-----~~~~--------l~~~~~~~~~~~~SpdG~-~la~~-~~~~i~v~~~~~~~~~~g 156 (706)
T 2z3z_A 94 LVVLFT--QGGLVGFDMLAR-----KVTY--------LFDTNEETASLDFSPVGD-RVAYV-RNHNLYIARGGKLGEGMS 156 (706)
T ss_dssp EEEEEE--TTEEEEEETTTT-----EEEE--------EECCTTCCTTCEECTTSS-EEEEE-ETTEEEEEECBCTTSCCC
T ss_pred eEEEEE--CCEEEEEECCCC-----ceEE--------ccCCcccccCCcCCCCCC-EEEEE-ECCeEEEEecCcccccCC
Confidence 444444 499999999432 1111 133456788899999999 77775 589999999988 6
Q ss_pred CcCceeeccCCCCc--------------eeEEEEeecCCEEEEEe---------------------------------CC
Q 037120 245 VLPSLELSTGSHGT--------------LNSIQLHAENQIIFAAG---------------------------------KH 277 (489)
Q Consensus 245 ~~~~~~~~~~h~~~--------------v~~~~~~p~~~~l~~~~---------------------------------~d 277 (489)
+ ..+....+... +.+++|+|||++|++++ .+
T Consensus 157 ~--~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~ 234 (706)
T 2z3z_A 157 R--AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHH 234 (706)
T ss_dssp C--CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCE
T ss_pred C--cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCe
Confidence 5 33333333332 48999999999999987 35
Q ss_pred CeEEEEEcCCCcccceee--cCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEE
Q 037120 278 GSIYLWDLRGGRTSAPFH--NHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGV 355 (489)
Q Consensus 278 g~i~lwd~~~~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~ 355 (489)
..|++||+.+++...... .+... +.+++|+|||+.++............| .+
T Consensus 235 ~~l~~~d~~~~~~~~~~~~~~~~~~----~~~~~~spdg~~l~~~~~~~~~~~~~v----------------------~~ 288 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTGEPKEKF----LTNLSWSPDENILYVAEVNRAQNECKV----------------------NA 288 (706)
T ss_dssp EEEEEEETTTTEEEECCCCSCTTCE----EEEEEECTTSSEEEEEEECTTSCEEEE----------------------EE
T ss_pred eEEEEEECCCCceEeeccCCCCcee----EeeEEEECCCCEEEEEEeCCCCCeeEE----------------------EE
Confidence 789999998876533222 33434 788888888876653111000000011 11
Q ss_pred EEeecc-ceeeecC-CCCCCcCCCCccccccCCCcceeec--CCcEEEEeecCCCcEEEEecc-CCCCCCeeeccCcccc
Q 037120 356 LDVYNS-RVSHVHC-PPPAWLSDSNNSADQLHLRKPSWLS--TNSIYAVGSSSDHGIHLLDFF-PGSSSPSHVDYNEDIE 430 (489)
Q Consensus 356 ~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~sgs~d~~i~vwd~~-~~~~~~~~~~~~~~~~ 430 (489)
++..++ ....+.. ....|.. ....+.|+| +| .++++++.|+.++||++. .+ ..+.
T Consensus 289 ~d~~~g~~~~~~~~~~~~~~~~---------~~~~~~~sp~~dg-~~l~~~~~~g~~~l~~~~~~~----------~~~~ 348 (706)
T 2z3z_A 289 YDAETGRFVRTLFVETDKHYVE---------PLHPLTFLPGSNN-QFIWQSRRDGWNHLYLYDTTG----------RLIR 348 (706)
T ss_dssp EETTTCCEEEEEEEEECSSCCC---------CCSCCEECTTCSS-EEEEEECTTSSCEEEEEETTS----------CEEE
T ss_pred EECCCCceeeEEEEccCCCeEC---------ccCCceeecCCCC-EEEEEEccCCccEEEEEECCC----------CEEE
Confidence 121111 1100000 0001110 012357777 65 477888889999999886 44 3444
Q ss_pred hhhHhhhhcccCCcccCCCceEE-EEeeCCCCeEEec-cCcc----eeEEEec
Q 037120 431 SLSERTKLKKENRFVPLSEGVTA-CVTHPLNNTIVAG-TKNS----SLLVVSQ 477 (489)
Q Consensus 431 ~~~~~~~~~~~~~~~~h~~~V~~-va~~p~~~~i~sg-s~dg----~i~v~~~ 477 (489)
.+. +|...|.+ ++|+|+++.|+.+ +.++ .|..|..
T Consensus 349 ~l~------------~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~ 389 (706)
T 2z3z_A 349 QVT------------KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDI 389 (706)
T ss_dssp ECC------------CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEET
T ss_pred ecC------------CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEc
Confidence 454 67777876 8999999876554 4444 4555543
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.9e-17 Score=170.45 Aligned_cols=272 Identities=13% Similarity=0.078 Sum_probs=176.2
Q ss_pred eeEEEeeCCCCCEEEEEec-CCC-----EEEEEEeccCCCCCceeeeeceeeeeecCCcc--------------------
Q 037120 158 LDAVRWNLANQDEVACAST-RSN-----VVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQ-------------------- 211 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~-d~g-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~-------------------- 211 (489)
|.+++|+|+++ .|++++. | + .|++||+..+. ....+.. ..+.
T Consensus 39 ~~~~~~SpdG~-~la~~~~~d-~~~~~~~i~~~d~~~g~--~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 106 (741)
T 2ecf_A 39 LMKPKVAPDGS-RVTFLRGKD-SDRNQLDLWSYDIGSGQ--TRLLVDS--------KVVLPGTETLSDEEKARRERQRIA 106 (741)
T ss_dssp CEEEEECTTSS-EEEEEECCS-SCTTEEEEEEEETTTCC--EEEEECG--------GGTC--------------------
T ss_pred CCCceEecCCC-EEEEEeccC-CCCcccEEEEEECCCCc--eeEccch--------hhcccccccccchhhhhhhhhhhc
Confidence 88999999997 6666665 6 7 99999995432 1111110 1111
Q ss_pred --cCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCc
Q 037120 212 --KGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGR 289 (489)
Q Consensus 212 --~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~ 289 (489)
..|.+++|+|||+ .|++++. +.|++||+.++..+....+..|...+.+++|+|||++|+.++ ++.|++||+.+++
T Consensus 107 ~~~~v~~~~~SpDg~-~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~ 183 (741)
T 2ecf_A 107 AMTGIVDYQWSPDAQ-RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGR 183 (741)
T ss_dssp CCEESCCCEECTTSS-EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTE
T ss_pred cccCcceeEECCCCC-EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCC
Confidence 3478999999999 8888885 999999999872111223456778899999999999988876 5699999999877
Q ss_pred ccceeecCCccC------------CCCeeEEEeCCCCcceeeccccc---------------------------------
Q 037120 290 TSAPFHNHKEVC------------HLPLTSLKLASMLEKIGTLKAQS--------------------------------- 324 (489)
Q Consensus 290 ~~~~~~~~~~~~------------~~~v~~l~~~~~~~~i~~~~~~~--------------------------------- 324 (489)
.......+.... ...+.+++|+|||+.++......
T Consensus 184 ~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~ 263 (741)
T 2ecf_A 184 QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQV 263 (741)
T ss_dssp EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEE
T ss_pred EEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCee
Confidence 644333322210 00147899999998774421100
Q ss_pred e-------------------eeccceeEEEeCCCCCeEEEEEecCC---ce-EEEEeeccceeeecCCC-CCCcCCCCcc
Q 037120 325 K-------------------IVSQEIHSIDLDPSCSYQLAFHLDDG---WS-GVLDVYNSRVSHVHCPP-PAWLSDSNNS 380 (489)
Q Consensus 325 ~-------------------~~~~~i~~~~~~p~~~~~~~~~~~~~---w~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 380 (489)
. .+...+..+.| |++++++....+.. +. .+++..++....+.... ..|..
T Consensus 264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~----- 337 (741)
T 2ecf_A 264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVP----- 337 (741)
T ss_dssp EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCC-----
T ss_pred EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCC-----
Confidence 0 01234678889 99998887765332 11 34444444433222110 01110
Q ss_pred ccccCCCcceeecCCcEEEEeecCCCcEEEEeccC-CCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEE-EeeC
Q 037120 381 ADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFP-GSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTAC-VTHP 458 (489)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v-a~~p 458 (489)
....+.|+|+|. ++++++.|+.++||.+.. + . ...+. .|...|..+ +|+|
T Consensus 338 ----~~~~~~~spdg~-~~~~~~~~g~~~l~~~~~~~----------~-~~~l~------------~~~~~v~~~~~~s~ 389 (741)
T 2ecf_A 338 ----LHNSLRFLDDGS-ILWSSERTGFQHLYRIDSKG----------K-AAALT------------HGNWSVDELLAVDE 389 (741)
T ss_dssp ----CCSCCEECTTSC-EEEEECTTSSCEEEEECSSS----------C-EEESC------------CSSSCEEEEEEEET
T ss_pred ----cCCceEECCCCe-EEEEecCCCccEEEEEcCCC----------C-eeeee------------ecceEEEeEeEEeC
Confidence 123578999877 777888899888888763 3 3 44444 677788887 5999
Q ss_pred CCCeEE-eccCcc--eeEEEecc
Q 037120 459 LNNTIV-AGTKNS--SLLVVSQK 478 (489)
Q Consensus 459 ~~~~i~-sgs~dg--~i~v~~~~ 478 (489)
+++.|+ +++.++ .+.||...
T Consensus 390 dg~~l~~~~~~~~~~~~~l~~~~ 412 (741)
T 2ecf_A 390 KAGLAYFRAGIESARESQIYAVP 412 (741)
T ss_dssp TTTEEEEEECSSCTTCBEEEEEE
T ss_pred CCCEEEEEEeCCCCceEEEEEEE
Confidence 998664 555565 78888653
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.8e-18 Score=167.23 Aligned_cols=170 Identities=10% Similarity=0.069 Sum_probs=121.5
Q ss_pred CCceeEEEECCCCcEEE----EEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 96 KPGISALDFDCKGIYLV----SATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la----~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
...|.+++|+|+|++|| +|+.|+.|+|||+.+......... ........+.+|... |.+++|+|+...+|
T Consensus 92 ~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~---~~~~~~~~~~~h~~~---V~~v~~~p~~~~~l 165 (434)
T 2oit_A 92 KFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQK---RPFAYHKLLKDAGGM---VIDMKWNPTVPSMV 165 (434)
T ss_dssp SSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSC---CCSEEEECCCSGGGS---EEEEEECSSCTTEE
T ss_pred CCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCc---ceeeeeeccCCCCCc---eEEEEECCCCCCEE
Confidence 34699999999999999 788899999999876311000000 000111122345555 99999999866799
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++++.| |+|++||++.. .. .. ...+|...|++++|+|++. +|++|+.||.|++||++ ++ ....
T Consensus 166 as~s~D-g~v~iwD~~~~-----~~---~~----~~~~~~~~v~~v~wspdg~-~lasgs~dg~v~iwd~~-~~--~~~~ 228 (434)
T 2oit_A 166 AVCLAD-GSIAVLQVTET-----VK---VC----ATLPSTVAVTSVCWSPKGK-QLAVGKQNGTVVQYLPT-LQ--EKKV 228 (434)
T ss_dssp EEEETT-SCEEEEEESSS-----EE---EE----EEECGGGCEEEEEECTTSS-CEEEEETTSCEEEECTT-CC--EEEE
T ss_pred EEEECC-CeEEEEEcCCC-----cc---ee----eccCCCCceeEEEEcCCCC-EEEEEcCCCcEEEEccC-Cc--cccc
Confidence 999988 99999999432 11 11 1255888999999999998 99999999999999998 33 1222
Q ss_pred cc-------CCCCceeEEEEeecCCEEEEEeC-CC------eEEEEEcCCC
Q 037120 252 ST-------GSHGTLNSIQLHAENQIIFAAGK-HG------SIYLWDLRGG 288 (489)
Q Consensus 252 ~~-------~h~~~v~~~~~~p~~~~l~~~~~-dg------~i~lwd~~~~ 288 (489)
+. .|...|.+++|++++.++++.+. || .+++||+++.
T Consensus 229 ~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 229 IPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp ECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 21 23448999999998887766543 53 3899999875
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.77 E-value=9.3e-17 Score=148.47 Aligned_cols=135 Identities=12% Similarity=0.107 Sum_probs=92.3
Q ss_pred EecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEecc-CCCC
Q 037120 114 ATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGY-ISDE 192 (489)
Q Consensus 114 g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~-~~~~ 192 (489)
++.|+.|++||+.+.+... +..|... |.+++|+|++. .|++++ ++.|.+||+.. ..
T Consensus 18 ~~~~~~i~~~d~~~~~~~~---------------~~~~~~~---v~~~~~spdg~-~l~~~~--~~~i~~~d~~~~~~-- 74 (297)
T 2ojh_A 18 GSMRSSIEIFNIRTRKMRV---------------VWQTPEL---FEAPNWSPDGK-YLLLNS--EGLLYRLSLAGDPS-- 74 (297)
T ss_dssp CCCCEEEEEEETTTTEEEE---------------EEEESSC---CEEEEECTTSS-EEEEEE--TTEEEEEESSSCCS--
T ss_pred CCcceeEEEEeCCCCceee---------------eccCCcc---eEeeEECCCCC-EEEEEc--CCeEEEEeCCCCCC--
Confidence 4578999999998744332 1224333 89999999987 666666 48999999944 21
Q ss_pred CceeeeeceeeeeecCCc-ccCeeEEEEecCCCcEEEEEe--CCCcEEEEE--CCCCCcCceeeccCCCCceeEEEEeec
Q 037120 193 PVEVLKTRRSVTVVGSDV-QKGLSDLAFSAVNTSRLIASD--THGVVNIWD--RRVGVLPSLELSTGSHGTLNSIQLHAE 267 (489)
Q Consensus 193 ~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~s--~dg~i~iwd--~~~~~~~~~~~~~~h~~~v~~~~~~p~ 267 (489)
.... ..+| ...+.+++|+|+++ .|++++ .++.+.||. +.++. .. .+.. ...+.+++|+|+
T Consensus 75 ~~~~----------~~~~~~~~~~~~~~spdg~-~l~~~~~~~~~~~~l~~~~~~~~~--~~-~~~~-~~~~~~~~~spd 139 (297)
T 2ojh_A 75 PEKV----------DTGFATICNNDHGISPDGA-LYAISDKVEFGKSAIYLLPSTGGT--PR-LMTK-NLPSYWHGWSPD 139 (297)
T ss_dssp CEEC----------CCTTCCCBCSCCEECTTSS-EEEEEECTTTSSCEEEEEETTCCC--CE-ECCS-SSSEEEEEECTT
T ss_pred ceEe----------ccccccccccceEECCCCC-EEEEEEeCCCCcceEEEEECCCCc--eE-Eeec-CCCccceEECCC
Confidence 1010 1223 46789999999999 888888 334555554 44433 22 2323 335889999999
Q ss_pred CCEEE-EEeCCCeEEEEEcC
Q 037120 268 NQIIF-AAGKHGSIYLWDLR 286 (489)
Q Consensus 268 ~~~l~-~~~~dg~i~lwd~~ 286 (489)
++.++ +++.|+.++||+++
T Consensus 140 g~~l~~~~~~~~~~~l~~~~ 159 (297)
T 2ojh_A 140 GKSFTYCGIRDQVFDIYSMD 159 (297)
T ss_dssp SSEEEEEEEETTEEEEEEEE
T ss_pred CCEEEEEECCCCceEEEEEE
Confidence 99887 56679999999865
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.5e-17 Score=169.55 Aligned_cols=143 Identities=11% Similarity=0.093 Sum_probs=95.7
Q ss_pred EEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec----
Q 037120 101 ALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST---- 176 (489)
Q Consensus 101 ~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~---- 176 (489)
+++|+|+|++++++ .|+.|++||+.+...... .. .|......|.+++|+|+++ .|+.++.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~--------~~------~~~~~~~~~~~~~~SpDg~-~la~~~~~~~~ 83 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTI--------LS------NRTMKSVNASNYGLSPDRQ-FVYLESDYSKL 83 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEE--------EC------HHHHHTTTCSEEEECTTSS-EEEEEEEEEEC
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEE--------Ec------cccccccceeeEEECCCCC-eEEEEecCcee
Confidence 66899999766554 699999999988544331 11 1111011277899999997 5555543
Q ss_pred -----CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 177 -----RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 177 -----d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
+ +.|++||+..+. .+.... ....+..++|+|||+ .|+.+. |+.|++||+.+++ ..+.
T Consensus 84 ~~~s~~-~~i~~~d~~~g~-----~~~~~~--------l~~~~~~~~~SPDG~-~la~~~-~~~i~~~~~~~g~--~~~l 145 (719)
T 1z68_A 84 WRYSYT-ATYYIYDLSNGE-----FVRGNE--------LPRPIQYLCWSPVGS-KLAYVY-QNNIYLKQRPGDP--PFQI 145 (719)
T ss_dssp SSSCEE-EEEEEEETTTTE-----ECCSSC--------CCSSBCCEEECSSTT-CEEEEE-TTEEEEESSTTSC--CEEC
T ss_pred EEeecc-eEEEEEECCCCc-----ccccee--------cCcccccceECCCCC-EEEEEE-CCeEEEEeCCCCC--cEEE
Confidence 4 899999994332 110011 113688899999999 788776 7899999998876 2222
Q ss_pred c-cCCCCce-----------------eEEEEeecCCEEEEEeCC
Q 037120 252 S-TGSHGTL-----------------NSIQLHAENQIIFAAGKH 277 (489)
Q Consensus 252 ~-~~h~~~v-----------------~~~~~~p~~~~l~~~~~d 277 (489)
. .++...| .+++|+|||+.|++++.|
T Consensus 146 ~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d 189 (719)
T 1z68_A 146 TFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFN 189 (719)
T ss_dssp CCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEE
T ss_pred ecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEEC
Confidence 2 2322222 489999999999998764
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-17 Score=171.80 Aligned_cols=274 Identities=12% Similarity=0.043 Sum_probs=170.6
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCccc---CeeEEEEecCCCcEEEEEeCC-
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQK---GLSDLAFSAVNTSRLIASDTH- 233 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~l~s~s~d- 233 (489)
+.+++|+|+++ ++++ +.| |+|++||+..+... .. +.+|.. .|.+++|+|||+ .|++++.+
T Consensus 19 ~~~~~~spdg~-~~~~-~~d-g~i~~~d~~~g~~~--~~----------~~~~~~~~~~v~~~~~SpDg~-~l~~~~~~~ 82 (723)
T 1xfd_A 19 DPEAKWISDTE-FIYR-EQK-GTVRLWNVETNTST--VL----------IEGKKIESLRAIRYEISPDRE-YALFSYNVE 82 (723)
T ss_dssp CCCCCBSSSSC-BCCC-CSS-SCEEEBCGGGCCCE--EE----------ECTTTTTTTTCSEEEECTTSS-EEEEEESCC
T ss_pred ccccEEcCCCc-EEEE-eCC-CCEEEEECCCCcEE--EE----------eccccccccccceEEECCCCC-EEEEEecCc
Confidence 56699999997 5555 555 99999999543211 11 133433 499999999999 88888764
Q ss_pred --------CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccC----
Q 037120 234 --------GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVC---- 301 (489)
Q Consensus 234 --------g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~---- 301 (489)
+.|++||+.+++...+.....|...+..++|+|||+.|+.++. +.|++||+.+++.......+....
T Consensus 83 ~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g 161 (723)
T 1xfd_A 83 PIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNG 161 (723)
T ss_dssp CCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEE
T ss_pred cceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECc
Confidence 7888999998763223223345556899999999999988875 799999999887654444332220
Q ss_pred ----------CCCeeEEEeCCCCcceeecccc------------------------------------ce----------
Q 037120 302 ----------HLPLTSLKLASMLEKIGTLKAQ------------------------------------SK---------- 325 (489)
Q Consensus 302 ----------~~~v~~l~~~~~~~~i~~~~~~------------------------------------~~---------- 325 (489)
...+.+++|+|||+.++..... ..
T Consensus 162 ~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~ 241 (723)
T 1xfd_A 162 LSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHD 241 (723)
T ss_dssp ECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCC
T ss_pred ccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCcee
Confidence 0013789999999877432110 00
Q ss_pred --e--e------ccceeEEEeCCCCCeEEEEEecCCc---eEEEEeeccceeeecCC-CCCCcCCCCccccccCCCccee
Q 037120 326 --I--V------SQEIHSIDLDPSCSYQLAFHLDDGW---SGVLDVYNSRVSHVHCP-PPAWLSDSNNSADQLHLRKPSW 391 (489)
Q Consensus 326 --~--~------~~~i~~~~~~p~~~~~~~~~~~~~w---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 391 (489)
. . ...+..+.|+|+++.++.....+.. ..+++..++....+... ...|... ....+.|
T Consensus 242 ~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~--------~~~~~~~ 313 (723)
T 1xfd_A 242 LEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHR--------QNEEPVF 313 (723)
T ss_dssp EECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCC--------CCCCCEE
T ss_pred EEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEec--------cCCCceE
Confidence 0 0 2246678999999877665544321 23444444443332110 0011110 0124789
Q ss_pred ecCCcEEEEe-ecCCC------cEEEEec-cCCCCCCeeeccCcc--cchhhHhhhhcccCCcccCCCceE-EEEeeCCC
Q 037120 392 LSTNSIYAVG-SSSDH------GIHLLDF-FPGSSSPSHVDYNED--IESLSERTKLKKENRFVPLSEGVT-ACVTHPLN 460 (489)
Q Consensus 392 ~~~~~~~l~s-gs~d~------~i~vwd~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~h~~~V~-~va~~p~~ 460 (489)
+|+|..+++. +..|+ .|++||+ ..+ +. ...+. .+...+. .++|+|++
T Consensus 314 spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~----------~~~~~~~l~------------~~~~~~~~~~~~spdg 371 (723)
T 1xfd_A 314 SKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNS----------SNDNIQSIT------------SGDWDVTKILAYDEKG 371 (723)
T ss_dssp CTTSCSEEEEEEECCSSSSCEEEEEEECSSCCS----------SSCCCCBSC------------CSSSCEEEEEEEETTT
T ss_pred cCCCCeEEEEEecccCCCcceeEEEEEeccCCC----------CccceeEee------------cCCeEEEeeeEEcCCC
Confidence 9998877765 56676 5777773 433 20 22232 2333444 47999999
Q ss_pred CeEEeccCc---ceeEEEecc
Q 037120 461 NTIVAGTKN---SSLLVVSQK 478 (489)
Q Consensus 461 ~~i~sgs~d---g~i~v~~~~ 478 (489)
+.|+..+.+ +.+.||...
T Consensus 372 ~~l~~~~~~~~~~~~~l~~~~ 392 (723)
T 1xfd_A 372 NKIYFLSTEDLPRRRQLYSAN 392 (723)
T ss_dssp TEEEEEESSSCTTCCEEEEEC
T ss_pred CEEEEEEcCCCCcceEEEEEe
Confidence 988765544 788888753
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-16 Score=164.85 Aligned_cols=191 Identities=7% Similarity=0.007 Sum_probs=123.1
Q ss_pred ceeEEEECCCCcEEEEEec---------CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCC
Q 037120 98 GISALDFDCKGIYLVSATR---------SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQ 168 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~---------dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~ 168 (489)
.|.+++|||||++||.++. ++.|++||+.+.+..... .+ . .. +.+++|+|+++
T Consensus 61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~------~l---~------~~---~~~~~~SPDG~ 122 (719)
T 1z68_A 61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGN------EL---P------RP---IQYLCWSPVGS 122 (719)
T ss_dssp TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSS------CC---C------SS---BCCEEECSSTT
T ss_pred ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccce------ec---C------cc---cccceECCCCC
Confidence 4889999999999999887 789999999885542100 01 0 11 77799999997
Q ss_pred CEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccC---------eeEEEEecCCCcEEEEEeCCC-----
Q 037120 169 DEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKG---------LSDLAFSAVNTSRLIASDTHG----- 234 (489)
Q Consensus 169 ~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~---------v~~~~~~~~~~~~l~s~s~dg----- 234 (489)
.|+.+. ++.|++||+..+.. ..+..... ....+.+|... ..+++|+|||+ .|++++.|.
T Consensus 123 -~la~~~--~~~i~~~~~~~g~~--~~l~~~~~-~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~-~la~~~~d~~~~~~ 195 (719)
T 1z68_A 123 -KLAYVY--QNNIYLKQRPGDPP--FQITFNGR-ENKIFNGIPDWVYEEEMLATKYALWWSPNGK-FLAYAEFNDTDIPV 195 (719)
T ss_dssp -CEEEEE--TTEEEEESSTTSCC--EECCCCCB-TTTEEESSCCHHHHHHTTCSSCCEEECTTSS-EEEEEEEECTTSCE
T ss_pred -EEEEEE--CCeEEEEeCCCCCc--EEEecCCC-cCCeEcccccceeeeecccCcccEEECCCCC-EEEEEEECCCCCce
Confidence 555555 48999999954321 11110000 00000223222 25899999999 888877552
Q ss_pred -----------------------------cEEEEECCCCCcC---ce---eeccCCCCceeEEEEeecCCEEEEEeCC--
Q 037120 235 -----------------------------VVNIWDRRVGVLP---SL---ELSTGSHGTLNSIQLHAENQIIFAAGKH-- 277 (489)
Q Consensus 235 -----------------------------~i~iwd~~~~~~~---~~---~~~~~h~~~v~~~~~~p~~~~l~~~~~d-- 277 (489)
.|++||+.+++.. .+ ..+.+|...+.+++|+||++++++....
T Consensus 196 ~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~ 275 (719)
T 1z68_A 196 IAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQ 275 (719)
T ss_dssp EEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESST
T ss_pred EEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEecccc
Confidence 7889999876520 01 1233678889999999998877764432
Q ss_pred --CeEEEEE----cCCCccccee----ecCCccCCCCee-----EEEeCCCCcce
Q 037120 278 --GSIYLWD----LRGGRTSAPF----HNHKEVCHLPLT-----SLKLASMLEKI 317 (489)
Q Consensus 278 --g~i~lwd----~~~~~~~~~~----~~~~~~~~~~v~-----~l~~~~~~~~i 317 (489)
..|.+|| +.+++....+ ..|... +. .+.|+|||+.+
T Consensus 276 ~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~spdg~~l 326 (719)
T 1z68_A 276 NVSVLSICDFREDWQTWDCPKTQEHIEESRTGW----AGGFFVSTPVFSYDAISY 326 (719)
T ss_dssp TEEEEEEEEECSSSSSEECCGGGEEEEECSSSC----SSSSSCCCCEECTTSSCE
T ss_pred CeEEEEEEcccCCCCCCceEEEEecccccCCce----EccccCCccEECCCCCeE
Confidence 3588999 8777765555 344444 43 55666666543
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-15 Score=142.59 Aligned_cols=173 Identities=7% Similarity=0.038 Sum_probs=108.1
Q ss_pred CCceeEEEECCCCcEEEEEecC----CeEEEEeCCCc--ccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCC
Q 037120 96 KPGISALDFDCKGIYLVSATRS----GCLTVHDFESL--YYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQD 169 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~~d----g~i~vwd~~~~--~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~ 169 (489)
...+..++|+|+|++|++++.+ +.|.+|++... .... ......+... ...+++ ++..
T Consensus 49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~------------~~~~~~~~~~---p~~~~~--dg~~ 111 (361)
T 3scy_A 49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHL------------LNTQKTMGAD---PCYLTT--NGKN 111 (361)
T ss_dssp CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEE------------EEEEECSSSC---EEEEEE--CSSE
T ss_pred CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEE------------eeEeccCCCC---cEEEEE--CCCE
Confidence 3457789999999999999886 89999988752 1111 0000111112 566777 6654
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeee------cCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCC
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVV------GSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRV 243 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~------~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 243 (489)
++++...+ +.|.+|++...... ..+ ....... ...+...+.+++|+|+++.++++...++.|.+|++..
T Consensus 112 l~~~~~~~-~~v~~~~~~~~g~~--~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~ 186 (361)
T 3scy_A 112 IVTANYSG-GSITVFPIGQDGAL--LPA--SDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINP 186 (361)
T ss_dssp EEEEETTT-TEEEEEEBCTTSCB--CSC--SEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred EEEEECCC-CEEEEEEeCCCCcC--ccc--ceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcC
Confidence 44444444 99999999532111 000 0000000 0112345688999999993444444689999999876
Q ss_pred CCc----C-c------eeeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcc
Q 037120 244 GVL----P-S------LELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRT 290 (489)
Q Consensus 244 ~~~----~-~------~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~ 290 (489)
... . . ......+......++|+|+|+++++++. ++.|.+||+.+++.
T Consensus 187 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~ 245 (361)
T 3scy_A 187 NANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML 245 (361)
T ss_dssp TCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE
T ss_pred CCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce
Confidence 442 1 0 1112244556789999999999888874 99999999987643
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.7e-15 Score=143.19 Aligned_cols=286 Identities=9% Similarity=-0.033 Sum_probs=161.8
Q ss_pred EEECCCCcEEEEEec-CCe--EEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 102 LDFDCKGIYLVSATR-SGC--LTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 102 ~~fs~~g~~la~g~~-dg~--i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
.+|+|||++||.++. +|. |.+||+.+.+.... . .++... +..++|+|+++ .|+.++.+
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l--------t------~~~~~~---~~~~~~spdg~-~l~~~~~~- 101 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL--------T------EGRGDN---TFGGFLSPDDD-ALFYVKDG- 101 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC--------C------CSSCBC---SSSCEECTTSS-EEEEEETT-
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe--------e------eCCCCC---ccceEEcCCCC-EEEEEeCC-
Confidence 789999999999988 674 77888877444331 1 112222 33478999997 55555555
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEE--EecCCCcEEEEE----------------------eCCC
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLA--FSAVNTSRLIAS----------------------DTHG 234 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~~~~~~~~l~s~----------------------s~dg 234 (489)
+.|.+||+..+... .+. ..+...+.... ++|++. +++.. ..+.
T Consensus 102 ~~l~~~d~~~g~~~--~~~----------~~~~~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (388)
T 3pe7_A 102 RNLMRVDLATLEEN--VVY----------QVPAEWVGYGTWVANSDCT-KLVGIEIRREDWVPLTDWKKFHEFYFTKPCC 168 (388)
T ss_dssp TEEEEEETTTCCEE--EEE----------ECCTTEEEEEEEEECTTSS-EEEEEEEEGGGCCCCCSHHHHHHHGGGCCCE
T ss_pred CeEEEEECCCCcce--eee----------echhhcccccceeECCCCC-eeccccccCcccccccccchhhhhhccCCcc
Confidence 89999999543111 111 11223333333 478888 66532 2447
Q ss_pred cEEEEECCCCCcCceeeccCCCCceeEEEEee-cCCEEEEEeCC------CeEEEEEcCCCcccceeecCCccCCCCeeE
Q 037120 235 VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHA-ENQIIFAAGKH------GSIYLWDLRGGRTSAPFHNHKEVCHLPLTS 307 (489)
Q Consensus 235 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~~~~~d------g~i~lwd~~~~~~~~~~~~~~~~~~~~v~~ 307 (489)
.|.+||+.+++. . .+..+...+..++|+| +|+.|+.+..+ ..|.++|+..++. ..+..+... ..+..
T Consensus 169 ~l~~~d~~~g~~--~-~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~--~~~~~ 242 (388)
T 3pe7_A 169 RLMRVDLKTGES--T-VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEG--ESCTH 242 (388)
T ss_dssp EEEEEETTTCCE--E-EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTT--EEEEE
T ss_pred eEEEEECCCCce--E-EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCC--ccccc
Confidence 899999998762 2 3334566789999999 99988877653 3788888776543 333332210 12677
Q ss_pred EEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCC
Q 037120 308 LKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLR 387 (489)
Q Consensus 308 l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (489)
+.|+|||+.++....... ... ..+.....+.+-...+....+.... .+ ...
T Consensus 243 ~~~spdg~~l~~~~~~~~--~~~----------~~l~~~d~~~g~~~~l~~~~~~~~~------~~-----------~~~ 293 (388)
T 3pe7_A 243 EFWVPDGSALVYVSYLKG--SPD----------RFIYSADPETLENRQLTSMPACSHL------MS-----------NYD 293 (388)
T ss_dssp EEECTTSSCEEEEEEETT--CCC----------EEEEEECTTTCCEEEEEEECCEEEE------EE-----------CTT
T ss_pred ceECCCCCEEEEEecCCC--CCc----------ceEEEEecCCCceEEEEcCCCceee------ee-----------cCC
Confidence 888888876643211000 000 0011111111100011111110000 00 011
Q ss_pred cceeecCCcEEEEee--------cCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCC----------
Q 037120 388 KPSWLSTNSIYAVGS--------SSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSE---------- 449 (489)
Q Consensus 388 ~~~~~~~~~~~l~sg--------s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---------- 449 (489)
...|+|+|..++++. ..+..|++||+.++ +. ..+. .|..
T Consensus 294 ~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~----------~~-~~l~------------~~~~~~~~~~~~~~ 350 (388)
T 3pe7_A 294 GSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG----------TQ-HRVA------------RHDTSWKVFEGDRQ 350 (388)
T ss_dssp SSEEEEEECCC------------CCCCEEEEEETTTT----------EE-EEEE------------ECCCCCCCBTTBSS
T ss_pred CCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC----------ce-EEec------------cccCcccccccccc
Confidence 236788877666543 45679999999877 33 2222 2333
Q ss_pred -ceEEEEeeCCCCeEEecc-CcceeEEEec
Q 037120 450 -GVTACVTHPLNNTIVAGT-KNSSLLVVSQ 477 (489)
Q Consensus 450 -~V~~va~~p~~~~i~sgs-~dg~i~v~~~ 477 (489)
.+.+++|+|+++.|+..+ .+|...||.-
T Consensus 351 ~~~~~~~~spDg~~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 351 VTHPHPSFTPDDKQILFTSDVHGKPALYLA 380 (388)
T ss_dssp TTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred cCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence 578899999998777554 5787777754
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.71 E-value=8e-15 Score=140.24 Aligned_cols=290 Identities=7% Similarity=0.046 Sum_probs=157.1
Q ss_pred CCCcEEEEEe----cCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC---C
Q 037120 106 CKGIYLVSAT----RSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR---S 178 (489)
Q Consensus 106 ~~g~~la~g~----~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d---~ 178 (489)
+...++..|+ .++.|.+|+++... |.+...... +... +..++|+|+++ .|++++.+ +
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~----------g~~~~~~~~--~~~~---p~~l~~spdg~-~l~~~~~~~~~~ 74 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEET----------GESLPLSDA--EVAN---PSYLIPSADGK-FVYSVNEFSKDQ 74 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTT----------CCEEEEEEE--ECSC---CCSEEECTTSS-EEEEEECCSSTT
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCC----------CCEEEeecc--cCCC---CceEEECCCCC-EEEEEEccCCCC
Confidence 3444566664 35689999875411 011111111 3333 55699999987 45555532 2
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCcC-ce-eec--c
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THGVVNIWDRRVGVLP-SL-ELS--T 253 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~-~~-~~~--~ 253 (489)
+.|.+|++...... +...... ..+......+++ +++ .|++++ .++.|.+||+...... .+ ... .
T Consensus 75 ~~v~~~~~~~~~g~----~~~~~~~----~~~~~~p~~~~~--dg~-~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~ 143 (361)
T 3scy_A 75 AAVSAFAFDKEKGT----LHLLNTQ----KTMGADPCYLTT--NGK-NIVTANYSGGSITVFPIGQDGALLPASDVIEFK 143 (361)
T ss_dssp CEEEEEEEETTTTE----EEEEEEE----ECSSSCEEEEEE--CSS-EEEEEETTTTEEEEEEBCTTSCBCSCSEEEECC
T ss_pred CcEEEEEEeCCCCc----EEEeeEe----ccCCCCcEEEEE--CCC-EEEEEECCCCEEEEEEeCCCCcCcccceeEEcc
Confidence 79999999532111 1111111 223446677777 777 555555 7899999999754321 11 100 0
Q ss_pred --------CCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcc------cc------eee-cCCccCCCCeeEEEeC
Q 037120 254 --------GSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRT------SA------PFH-NHKEVCHLPLTSLKLA 311 (489)
Q Consensus 254 --------~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~------~~------~~~-~~~~~~~~~v~~l~~~ 311 (489)
.+...+.+++|+|+|+++++++. ++.|++|++..... +. .+. ..... ...++|+
T Consensus 144 g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~s 219 (361)
T 3scy_A 144 GSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSG----PRHLIFN 219 (361)
T ss_dssp CCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCC----EEEEEEC
T ss_pred CCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCC----CeEEEEc
Confidence 11234578999999998877765 89999999876431 11 111 11111 4445555
Q ss_pred CCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCccee
Q 037120 312 SMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSW 391 (489)
Q Consensus 312 ~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (489)
|+| +++++....++-..+++...+....+.... ...... .....++|
T Consensus 220 pdg--------------------------~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~-~~~~~~------~~~~~i~~ 266 (361)
T 3scy_A 220 SDG--------------------------KFAYLINEIGGTVIAFRYADGMLDEIQTVA-ADTVNA------QGSGDIHL 266 (361)
T ss_dssp TTS--------------------------SEEEEEETTTCEEEEEEEETTEEEEEEEEE-SCSSCC------CCEEEEEE
T ss_pred CCC--------------------------CEEEEEcCCCCeEEEEEecCCceEEeEEEe-cCCCCC------CCcccEEE
Confidence 554 444433322222223333332221111100 000000 01134678
Q ss_pred ecCCcEEEEeecC-CCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEecc-Cc
Q 037120 392 LSTNSIYAVGSSS-DHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGT-KN 469 (489)
Q Consensus 392 ~~~~~~~l~sgs~-d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs-~d 469 (489)
+|+|..++++... ++.|.+|++....... +.+..+. . ...+.+++|+|++++|++++ .+
T Consensus 267 spdg~~l~v~~~~~~~~i~v~~~~~~~g~~------~~~~~~~------------~-g~~~~~~~~spdg~~l~~~~~~~ 327 (361)
T 3scy_A 267 SPDGKYLYASNRLKADGVAIFKVDETNGTL------TKVGYQL------------T-GIHPRNFIITPNGKYLLVACRDT 327 (361)
T ss_dssp CTTSSEEEEEECSSSCEEEEEEECTTTCCE------EEEEEEE------------C-SSCCCEEEECTTSCEEEEEETTT
T ss_pred CCCCCEEEEECCCCCCEEEEEEEcCCCCcE------EEeeEec------------C-CCCCceEEECCCCCEEEEEECCC
Confidence 8888877777776 7899999996320000 1122222 2 34678999999999777776 67
Q ss_pred ceeEEEecc
Q 037120 470 SSLLVVSQK 478 (489)
Q Consensus 470 g~i~v~~~~ 478 (489)
+.|.+|...
T Consensus 328 ~~v~v~~~d 336 (361)
T 3scy_A 328 NVIQIFERD 336 (361)
T ss_dssp TEEEEEEEC
T ss_pred CCEEEEEEE
Confidence 999997543
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=3.3e-15 Score=142.18 Aligned_cols=243 Identities=13% Similarity=0.097 Sum_probs=155.6
Q ss_pred eeEEEeeCCCCCEEEEEec------CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe
Q 037120 158 LDAVRWNLANQDEVACAST------RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD 231 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~------d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s 231 (489)
+..++|+|++..++++... + +.|.+||.... +.+.... ....+..++|+|+++.++++..
T Consensus 43 ~~~~~~s~dg~~l~~~~~~~~~~~~~-~~v~~~d~~~~-----~~~~~~~--------~~~~~~~~~~s~dg~~l~v~~~ 108 (353)
T 3vgz_A 43 AYEMAYSQQENALWLATSQSRKLDKG-GVVYRLDPVTL-----EVTQAIH--------NDLKPFGATINNTTQTLWFGNT 108 (353)
T ss_dssp EEEEEEETTTTEEEEEECCCTTTEES-EEEEEECTTTC-----CEEEEEE--------ESSCCCSEEEETTTTEEEEEET
T ss_pred ccceEECCCCCEEEEEcCCCcCCCCC-ccEEEEcCCCC-----eEEEEEe--------cCCCcceEEECCCCCEEEEEec
Confidence 7789999998756555533 4 79999998432 2222111 1234678999999984555666
Q ss_pred CCCcEEEEECCCCCcCceeeccCCCC---------ceeEEEEeecCCEEEEEe--CCCeEEEEEcCCCcccceeecCCcc
Q 037120 232 THGVVNIWDRRVGVLPSLELSTGSHG---------TLNSIQLHAENQIIFAAG--KHGSIYLWDLRGGRTSAPFHNHKEV 300 (489)
Q Consensus 232 ~dg~i~iwd~~~~~~~~~~~~~~h~~---------~v~~~~~~p~~~~l~~~~--~dg~i~lwd~~~~~~~~~~~~~~~~ 300 (489)
.++.|.+||..+++ .+..+..+.. .+.+++|+|+++++++++ .++.|.+||+.+++.+..+..+...
T Consensus 109 ~~~~v~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~ 186 (353)
T 3vgz_A 109 VNSAVTAIDAKTGE--VKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKM 186 (353)
T ss_dssp TTTEEEEEETTTCC--EEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTT
T ss_pred CCCEEEEEeCCCCe--eEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCc
Confidence 78999999999876 4333333221 268899999999888876 3889999999998877777644433
Q ss_pred CCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCcc
Q 037120 301 CHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNS 380 (489)
Q Consensus 301 ~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (489)
+..++|+|+++.+..... + ..+. +++..++........... ...
T Consensus 187 ----~~~~~~s~dg~~l~~~~~----------------~-~~i~----------~~d~~~~~~~~~~~~~~~-~~~---- 230 (353)
T 3vgz_A 187 ----STGLALDSEGKRLYTTNA----------------D-GELI----------TIDTADNKILSRKKLLDD-GKE---- 230 (353)
T ss_dssp ----CCCCEEETTTTEEEEECT----------------T-SEEE----------EEETTTTEEEEEEECCCS-SSC----
T ss_pred ----cceEEECCCCCEEEEEcC----------------C-CeEE----------EEECCCCeEEEEEEcCCC-CCC----
Confidence 667777777765542110 0 0111 122212211111100000 000
Q ss_pred ccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCC
Q 037120 381 ADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLN 460 (489)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~ 460 (489)
.....++|.|++..++++...++.|++||..++ +.+..+. ... ..+++|+|++
T Consensus 231 ---~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~----------~~~~~~~------------~~~--~~~~~~s~dg 283 (353)
T 3vgz_A 231 ---HFFINISLDTARQRAFITDSKAAEVLVVDTRNG----------NILAKVA------------APE--SLAVLFNPAR 283 (353)
T ss_dssp ---CCEEEEEEETTTTEEEEEESSSSEEEEEETTTC----------CEEEEEE------------CSS--CCCEEEETTT
T ss_pred ---cccceEEECCCCCEEEEEeCCCCEEEEEECCCC----------cEEEEEE------------cCC--CceEEECCCC
Confidence 011236788888888888878899999999888 5555444 111 2569999999
Q ss_pred C-eEEeccCcceeEEEeccc
Q 037120 461 N-TIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 461 ~-~i~sgs~dg~i~v~~~~~ 479 (489)
+ .++++..++.|.+|..+.
T Consensus 284 ~~l~v~~~~~~~v~~~d~~~ 303 (353)
T 3vgz_A 284 NEAYVTHRQAGKVSVIDAKS 303 (353)
T ss_dssp TEEEEEETTTTEEEEEETTT
T ss_pred CEEEEEECCCCeEEEEECCC
Confidence 8 556666799999998654
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=7.2e-15 Score=154.30 Aligned_cols=181 Identities=10% Similarity=0.007 Sum_probs=121.9
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCce--eEEEeeCCCCCEEEEEec
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQL--DAVRWNLANQDEVACAST 176 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V--~~v~~~~~~~~~l~s~~~ 176 (489)
..+++|+|||++|+++ ||.|++||+.++.+... +.+|......+ ..++|+|+++.+ +.++.
T Consensus 19 ~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~Spdg~~l-~~~~~ 81 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVF--------------LENSTFDEFGHSINDYSISPDGQFI-LLEYN 81 (740)
T ss_dssp CCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEE--------------ECTTTTTTCCSCCCEEEECTTSSEE-EEEEE
T ss_pred ccccEECCCCcEEEEc--CCcEEEEECCCCceEEE--------------EechhhhhhcccccceEECCCCCEE-EEEEC
Confidence 5578999999999987 99999999988554321 12222222222 448999999744 44443
Q ss_pred C--------CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCc
Q 037120 177 R--------SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPS 248 (489)
Q Consensus 177 d--------~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 248 (489)
+ .+.+.+||+..+. . ..+..|...+...+|+|||+ .|+.+. |+.|++||+.+++ .
T Consensus 82 ~~~~~r~~~~~~~~~~d~~~~~-----~--------~~l~~~~~~~~~~~~SPdG~-~la~~~-~~~i~~~~~~~~~--~ 144 (740)
T 4a5s_A 82 YVKQWRHSYTASYDIYDLNKRQ-----L--------ITEERIPNNTQWVTWSPVGH-KLAYVW-NNDIYVKIEPNLP--S 144 (740)
T ss_dssp EEECSSSCEEEEEEEEETTTTE-----E--------CCSSCCCTTEEEEEECSSTT-CEEEEE-TTEEEEESSTTSC--C
T ss_pred CeeeEEEccceEEEEEECCCCc-----E--------EEcccCCCcceeeEECCCCC-EEEEEE-CCeEEEEECCCCc--e
Confidence 2 0456799994331 1 11255667899999999999 777775 7899999998876 2
Q ss_pred eee-ccCCCCce-----------------eEEEEeecCCEEEEEeCC-C-------------------------------
Q 037120 249 LEL-STGSHGTL-----------------NSIQLHAENQIIFAAGKH-G------------------------------- 278 (489)
Q Consensus 249 ~~~-~~~h~~~v-----------------~~~~~~p~~~~l~~~~~d-g------------------------------- 278 (489)
.+. ..++...+ ..+.|+|||+.|+.++.| +
T Consensus 145 ~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~ 224 (740)
T 4a5s_A 145 YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAV 224 (740)
T ss_dssp EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSC
T ss_pred EEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCc
Confidence 222 12332222 358999999999887532 1
Q ss_pred ----eEEEEEcCC---Ccc--cceee------cCCccCCCCeeEEEeCCCCcce
Q 037120 279 ----SIYLWDLRG---GRT--SAPFH------NHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 279 ----~i~lwd~~~---~~~--~~~~~------~~~~~~~~~v~~l~~~~~~~~i 317 (489)
.|++||+.+ ++. ...+. ++... +..++|+|||+.+
T Consensus 225 ~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~wspdg~~~ 274 (740)
T 4a5s_A 225 NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHY----LCDVTWATQERIS 274 (740)
T ss_dssp CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEE----EEEEEEEETTEEE
T ss_pred CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeE----EEEEEEeCCCeEE
Confidence 588899988 732 22332 25555 9999999999854
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-15 Score=143.46 Aligned_cols=164 Identities=12% Similarity=0.112 Sum_probs=109.0
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCC-CcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE-EEEE
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFE-SLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE-VACA 174 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~-~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~-l~s~ 174 (489)
..+..++|+|+|++|++++.+ .|.+|++. +++.... .. ...+ .. +.+++|+|++..+ ++++
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~---------~~---~~~~-g~---~~~~~~spdg~~l~~~~~ 102 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHE---------AS---HPIG-GH---PRANDADTNTRAIFLLAA 102 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEE---------EE---EECC-SS---GGGGCTTSCCEEEEEEEC
T ss_pred CCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEe---------eE---eecC-CC---CccEEECCCCCEEEEEEe
Confidence 357889999999999999988 99999986 4322110 00 0000 11 3448899998642 3344
Q ss_pred e-------------cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCCcEEEEE
Q 037120 175 S-------------TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THGVVNIWD 240 (489)
Q Consensus 175 ~-------------~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg~i~iwd 240 (489)
. .+ |++.+|++.... ........+ ...+...+.+++|+|+|+ ++++++ .++.|++||
T Consensus 103 ~~~~~~~~~~~~~~~~-g~v~v~~~~~~g----~~~~~~~~~---~~~~~~~~~~~~~spdG~-~l~~~~~~~~~v~~~~ 173 (365)
T 1jof_A 103 KQPPYAVYANPFYKFA-GYGNVFSVSETG----KLEKNVQNY---EYQENTGIHGMVFDPTET-YLYSADLTANKLWTHR 173 (365)
T ss_dssp SSTTCCEEEEEESSSC-CEEEEEEECTTC----CEEEEEEEE---ECCTTCCEEEEEECTTSS-EEEEEETTTTEEEEEE
T ss_pred cCCcceeccceeecCC-ceEEEEccCCCC----cCcceEeeE---EeCCCCcceEEEECCCCC-EEEEEcCCCCEEEEEE
Confidence 2 45 999999994211 111111111 012456789999999998 676665 468999999
Q ss_pred CC-CCCcCceeecc--CCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcC
Q 037120 241 RR-VGVLPSLELST--GSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLR 286 (489)
Q Consensus 241 ~~-~~~~~~~~~~~--~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~ 286 (489)
+. +++...+.... .|...+..++|+|+|+++++++. ++.|.+|++.
T Consensus 174 ~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~ 223 (365)
T 1jof_A 174 KLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp ECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred ECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEe
Confidence 98 66522222222 24567899999999999988876 7899999876
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-14 Score=136.15 Aligned_cols=263 Identities=10% Similarity=0.060 Sum_probs=168.4
Q ss_pred CceeEEEECCCCcEEEEEecC------------------------CeEEEEeCCCcccccCCCCCCCCCcccccccccCC
Q 037120 97 PGISALDFDCKGIYLVSATRS------------------------GCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHI 152 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~d------------------------g~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~ 152 (489)
..+.+++|+|+|+++++...+ +.|.+||..++...... . ..+.
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-------~------~~~~ 90 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS-------G------KNLF 90 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE-------C------TTTC
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc-------C------CCcc
Confidence 459999999999999988877 47999998764433210 0 1122
Q ss_pred CCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEec-CCCcEEEEEe
Q 037120 153 PLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSA-VNTSRLIASD 231 (489)
Q Consensus 153 ~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~s 231 (489)
.. ...+++++++. ++++...+ +.|++||..... .....+...... ....++......|+++| ++. ++++.+
T Consensus 91 ~~---p~gia~d~~g~-l~v~d~~~-~~v~~~~~~g~~-~~~~~~~~~~~~-g~~~~~~~~P~~ia~~~~~g~-lyv~d~ 162 (329)
T 3fvz_A 91 YL---PHGLSIDTDGN-YWVTDVAL-HQVFKLDPHSKE-GPLLILGRSMQP-GSDQNHFCQPTDVAVEPSTGA-VFVSDG 162 (329)
T ss_dssp SS---EEEEEECTTSC-EEEEETTT-TEEEEECTTCSS-CCSEEESBTTBC-CCSTTCCSSEEEEEECTTTCC-EEEEEC
T ss_pred CC---ceEEEECCCCC-EEEEECCC-CEEEEEeCCCCe-EEEEEecccCCC-CCCccccCCCcEEEEeCCCCe-EEEEeC
Confidence 22 67799999986 77777766 899999973221 011111100000 00023455789999999 666 778776
Q ss_pred -CCCcEEEEECCCCCcCceeecc----------CCCCceeEEEEeec-CCEEEEEeCCCeEEEEEcCCCcccceeecCCc
Q 037120 232 -THGVVNIWDRRVGVLPSLELST----------GSHGTLNSIQLHAE-NQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKE 299 (489)
Q Consensus 232 -~dg~i~iwd~~~~~~~~~~~~~----------~h~~~v~~~~~~p~-~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~ 299 (489)
.++.|++||. .++ .+..+. ++-.....++++|+ +.++++...++.|++||..+++.+..+.....
T Consensus 163 ~~~~~I~~~~~-~g~--~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~ 239 (329)
T 3fvz_A 163 YCNSRIVQFSP-SGK--FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASF 239 (329)
T ss_dssp SSCCEEEEECT-TSC--EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTT
T ss_pred CCCCeEEEEcC-CCC--EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecccc
Confidence 6999999994 444 333332 12234789999999 55555556699999999998877666643211
Q ss_pred cCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCc
Q 037120 300 VCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNN 379 (489)
Q Consensus 300 ~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (489)
. ..+.+++|+| + .++.. +
T Consensus 240 ~--~~~~~~~~~p-g---------------------------~~~~~--~------------------------------ 257 (329)
T 3fvz_A 240 G--RNVFAISYIP-G---------------------------FLFAV--N------------------------------ 257 (329)
T ss_dssp T--TCEEEEEEET-T---------------------------EEEEE--E------------------------------
T ss_pred C--CCcceeeecC-C---------------------------EEEEe--C------------------------------
Confidence 1 1144444443 1 11100 0
Q ss_pred cccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCC
Q 037120 380 SADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPL 459 (489)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~ 459 (489)
+...++.+.+..|++||..++ +.+..+.. ..++...+.+++++|+
T Consensus 258 ----------------g~~~v~~~~~~~v~~~~~~~g----------~~~~~~~~---------~~~~~~~p~~ia~~~d 302 (329)
T 3fvz_A 258 ----------------GKPYFGDQEPVQGFVMNFSSG----------EIIDVFKP---------VRKHFDMPHDIVASED 302 (329)
T ss_dssp ----------------CCCCTTCSCCCCEEEEETTTC----------CEEEEECC---------SSSCCSSEEEEEECTT
T ss_pred ----------------CCEEeccCCCcEEEEEEcCCC----------eEEEEEcC---------CCCccCCeeEEEECCC
Confidence 122333446778999999888 55554420 0156677899999999
Q ss_pred CCeEEeccCcceeEEEecccc
Q 037120 460 NNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 460 ~~~i~sgs~dg~i~v~~~~~~ 480 (489)
+..+++...++.|.+|..+.+
T Consensus 303 G~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 303 GTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp SEEEEEESSSCCEEEEEEEEC
T ss_pred CCEEEEECCCCEEEEEeCCcc
Confidence 999999999999999987654
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.64 E-value=8.9e-15 Score=149.36 Aligned_cols=161 Identities=6% Similarity=0.000 Sum_probs=108.9
Q ss_pred CceeEEEECCCCcEEEEEec---CCeEEEEeCCC--cccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 97 PGISALDFDCKGIYLVSATR---SGCLTVHDFES--LYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~---dg~i~vwd~~~--~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
..|.+++|+|| +++++++. +...+||.+.. ..... .+. .... +...+|+|++..++
T Consensus 65 ~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~--------------~l~-~~~~---~~~~~~s~dg~~~~ 125 (582)
T 3o4h_A 65 NSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ--------------RLE-AVKP---MRILSGVDTGEAVV 125 (582)
T ss_dssp SEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE--------------ECT-TSCS---BEEEEEEECSSCEE
T ss_pred cccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc--------------ccc-CCCC---ceeeeeCCCCCeEE
Confidence 46999999999 78887775 45566765533 11000 000 0111 44578899887766
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC----CcEEEEECCCCCcC
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH----GVVNIWDRRVGVLP 247 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~ 247 (489)
++...+ +.+.+||+..+ .. ... ..+.. .+++|+|||+ .|++++.| +.|++||+.+++
T Consensus 126 ~~s~~~-~~~~l~d~~~g-----~~-~~l-------~~~~~--~~~~~spDG~-~la~~~~~~~~~~~i~~~d~~~g~-- 186 (582)
T 3o4h_A 126 FTGATE-DRVALYALDGG-----GL-REL-------ARLPG--FGFVSDIRGD-LIAGLGFFGGGRVSLFTSNLSSGG-- 186 (582)
T ss_dssp EEEECS-SCEEEEEEETT-----EE-EEE-------EEESS--CEEEEEEETT-EEEEEEEEETTEEEEEEEETTTCC--
T ss_pred EEecCC-CCceEEEccCC-----cE-EEe-------ecCCC--ceEEECCCCC-EEEEEEEcCCCCeEEEEEcCCCCC--
Confidence 655555 45559999432 11 101 11122 7899999999 88877766 789999999876
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEEeCCC--eEEEEEcCCCcccceeecC
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAAGKHG--SIYLWDLRGGRTSAPFHNH 297 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg--~i~lwd~~~~~~~~~~~~~ 297 (489)
.. .+..|...+..++|+|||+.|+++..++ .|++||+.+++.. .+..+
T Consensus 187 ~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~ 236 (582)
T 3o4h_A 187 LR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP 236 (582)
T ss_dssp CE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS
T ss_pred ce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC
Confidence 33 4557888899999999999999777788 8999999887654 44433
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.1e-14 Score=133.77 Aligned_cols=200 Identities=11% Similarity=0.112 Sum_probs=120.7
Q ss_pred CCceeEEEECCCCcEEEEEe-cCCeEEEEeCCCc---ccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 96 KPGISALDFDCKGIYLVSAT-RSGCLTVHDFESL---YYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~-~dg~i~vwd~~~~---~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
...+..++|+|+|++|++++ .++.|.+|++... .........+ . .+. .. .....+.+++|+|++. ++
T Consensus 85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~--~-~p~--~~---~~~~~~~~~~~spdg~-l~ 155 (347)
T 3hfq_A 85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSG--H-GPR--PE---QDGSHIHYTDLTPDNR-LA 155 (347)
T ss_dssp SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCC--C-CSS--TT---CSSCCEEEEEECTTSC-EE
T ss_pred CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCC--C-CCC--cc---ccCCCceEEEECCCCc-EE
Confidence 44588999999999998888 6899999999631 1111000000 0 000 00 0112278899999998 77
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCC--CCcCce
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRV--GVLPSL 249 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~~~~ 249 (489)
++...+ +.|.+||+... ..+....... .........++|+|+|+.+++++..++.|.+||+.. ++...+
T Consensus 156 v~~~~~-~~v~~~~~~~~-----g~~~~~~~~~---~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~ 226 (347)
T 3hfq_A 156 VIDLGS-DKVYVYNVSDA-----GQLSEQSVLT---MEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQL 226 (347)
T ss_dssp EEETTT-TEEEEEEECTT-----SCEEEEEEEE---CCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred EEeCCC-CEEEEEEECCC-----CcEEEeeeEE---cCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEe
Confidence 777666 89999999521 1111111110 112236778999999984444556789999999875 321112
Q ss_pred eeccCCC------CceeEEEEeecCCEEEEEe-CCCeEEEEEcCCC---cccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 250 ELSTGSH------GTLNSIQLHAENQIIFAAG-KHGSIYLWDLRGG---RTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 250 ~~~~~h~------~~v~~~~~~p~~~~l~~~~-~dg~i~lwd~~~~---~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
....... ..+..++|+|+|++|++++ .++.|.+||+... +.+..+..+... +..++|+|+|+.+
T Consensus 227 ~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~----~~~~~~spdg~~l 300 (347)
T 3hfq_A 227 GIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDF----PRDFDLDPTEAFV 300 (347)
T ss_dssp EEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSC----CCEEEECTTSSEE
T ss_pred eeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCC----cCeEEECCCCCEE
Confidence 2222111 4588999999999886654 4899999999732 223333333323 4555555555443
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-12 Score=120.70 Aligned_cols=160 Identities=10% Similarity=0.092 Sum_probs=108.0
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEee-CCCCCEEEEEe
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWN-LANQDEVACAS 175 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~-~~~~~~l~s~~ 175 (489)
..+.+++++++|+++++...++.|.+||.+...... ........+|... +..+++. +++ .++++..
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~---------~~~~~~~~~~~~~---p~~i~~~~~~g-~l~v~~~ 96 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQ---------FGECGKRDSQLLY---PNRVAVVRNSG-DIIVTER 96 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEE---------ECCBSSSTTCBSS---EEEEEEETTTT-EEEEEEC
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEE---------ecccCCCcccccC---ceEEEEEcCCC-eEEEEcC
Confidence 458899999999999998899999999987422111 0000000112222 7789995 554 4666654
Q ss_pred c-CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc-
Q 037120 176 T-RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST- 253 (489)
Q Consensus 176 ~-d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~- 253 (489)
. + +.|.+||.. + ..+.... ..+...+.++++.+++. ++++...++.|.+||... + .+..+.
T Consensus 97 ~~~-~~i~~~d~~-g-----~~~~~~~------~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~g-~--~~~~~~~ 159 (286)
T 1q7f_A 97 SPT-HQIQIYNQY-G-----QFVRKFG------ATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNG-N--VLHKFGC 159 (286)
T ss_dssp GGG-CEEEEECTT-S-----CEEEEEC------TTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTS-C--EEEEEEC
T ss_pred CCC-CEEEEECCC-C-----cEEEEec------CccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCCC-C--EEEEeCC
Confidence 3 5 899999952 1 1111111 23445789999999998 888888889999999653 3 232222
Q ss_pred -CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcC
Q 037120 254 -GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLR 286 (489)
Q Consensus 254 -~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~ 286 (489)
.+...+..++++|+|+++++...++.|++||..
T Consensus 160 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~ 193 (286)
T 1q7f_A 160 SKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE 193 (286)
T ss_dssp TTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT
T ss_pred CCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC
Confidence 344568999999999877766779999999974
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-13 Score=130.06 Aligned_cols=130 Identities=12% Similarity=0.022 Sum_probs=91.0
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCccc-CeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCc
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQK-GLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPS 248 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 248 (489)
++++++.+ +.|.+||+... +.+.... .++.. .+..++|+|+++.++++++.++.|.+||+.+++ .
T Consensus 3 ~~v~~~~~-~~v~~~d~~~~-----~~~~~~~------~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~--~ 68 (337)
T 1pby_B 3 YILAPARP-DKLVVIDTEKM-----AVDKVIT------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE--T 68 (337)
T ss_dssp EEEEEETT-TEEEEEETTTT-----EEEEEEE------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC--E
T ss_pred EEEEcCCC-CeEEEEECCCC-----cEEEEEE------cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC--e
Confidence 67777777 99999999432 2222211 22222 378899999998455667778999999998876 3
Q ss_pred eeecc-CC----CCceeEEEEeecCCEEEEEe------------CCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeC
Q 037120 249 LELST-GS----HGTLNSIQLHAENQIIFAAG------------KHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLA 311 (489)
Q Consensus 249 ~~~~~-~h----~~~v~~~~~~p~~~~l~~~~------------~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~ 311 (489)
+..+. .+ ...+.+++|+|+|+++++++ .++.|.+||+.+++.+..+.. ... +.+++|+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~----~~~~~~s 143 (337)
T 1pby_B 69 LGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQ----ITMLAWA 143 (337)
T ss_dssp EEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSS----CCCEEEC
T ss_pred EeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCC----cceeEEC
Confidence 33222 22 22677899999999998886 579999999998877666654 223 6677788
Q ss_pred CCCccee
Q 037120 312 SMLEKIG 318 (489)
Q Consensus 312 ~~~~~i~ 318 (489)
|+++.+.
T Consensus 144 ~dg~~l~ 150 (337)
T 1pby_B 144 RDGSKLY 150 (337)
T ss_dssp TTSSCEE
T ss_pred CCCCEEE
Confidence 8777554
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.58 E-value=5.5e-13 Score=138.25 Aligned_cols=200 Identities=7% Similarity=-0.071 Sum_probs=120.5
Q ss_pred ccCCCceeEEEECCCCcEEEEE--ecCCeEEEEeCCCcccccCCCCCCCCCcccccc---cccCCCCCCceeEEEee--C
Q 037120 93 SFGKPGISALDFDCKGIYLVSA--TRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSK---HLLHIPLPQQLDAVRWN--L 165 (489)
Q Consensus 93 ~~~~~~V~~~~fs~~g~~la~g--~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~---~~~h~~~~~~V~~v~~~--~ 165 (489)
..+...|..++|++++.+++.. +.++...||.......... +..+.. ...|...+. ...|+ |
T Consensus 20 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------l~~~~~~~~~~~~~~~~~---~~~~~~SP 88 (662)
T 3azo_A 20 ASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEES--------ALPAPWNVRNRVFEYSGF---PWAGVPRP 88 (662)
T ss_dssp HHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEE--------SSCTTCCBCCCGGGTCCC---CEEEECCS
T ss_pred hhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcce--------eCCCCccccccccccCCc---cceeeeec
Confidence 3355679999999988777877 5688999998633111110 111000 011111111 36666 9
Q ss_pred CCCCEEEEEecCCCEEEEEEeccCC-CCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC----------C
Q 037120 166 ANQDEVACASTRSNVVSIYDIGYIS-DEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH----------G 234 (489)
Q Consensus 166 ~~~~~l~s~~~d~g~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d----------g 234 (489)
+++.+|+.++..+..|.+|++.... ... ..+.... ...|...+.+++|+|||+ .|++++.| .
T Consensus 89 Dg~~~la~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~-----~~~~~~~~~~~~~spDg~-~l~~~~~~~~~~~~~~~~~ 161 (662)
T 3azo_A 89 AGGPLLVFTHFGDQRLYAFEPDAPGGAVP-RPLTPVS-----AVGGGLRWADPVLLPERG-EVWCMAEEFTGEGPSDVRR 161 (662)
T ss_dssp SSSCEEEEEBTTTCCEEEECTTSTTCCCC-EECSCCC-----CSTTCEEEEEEEEETTTT-EEEEEEEEECSSSTTCEEE
T ss_pred CCCeEEEEEECCCCeEEEEcCCCCCCCCC-EeccCCc-----cCCCCccccCcEECCCCC-EEEEEEecccCCCCCCcee
Confidence 9876244444222566666552001 111 1111100 011566789999999999 88888766 5
Q ss_pred cEEEEECCC------CCcCceeecc-CCCCceeEEEEeecCCEEEEEeCC--------CeEEEEEcC-CC---cccceee
Q 037120 235 VVNIWDRRV------GVLPSLELST-GSHGTLNSIQLHAENQIIFAAGKH--------GSIYLWDLR-GG---RTSAPFH 295 (489)
Q Consensus 235 ~i~iwd~~~------~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~~~~~d--------g~i~lwd~~-~~---~~~~~~~ 295 (489)
.|++||+.+ ++ .. .+. .+...+..++|+|||++|+.++.+ ..|++||+. ++ +......
T Consensus 162 ~i~~~~~~~~~~~~~~~--~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~ 238 (662)
T 3azo_A 162 FLAAVPLDGSAAADRSA--VR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLG 238 (662)
T ss_dssp EEEEEETTSTTTTCGGG--SE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEE
T ss_pred EEEEEECCCCccccCCc--ee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCC
Confidence 899999987 43 22 333 455678889999999999888754 489999999 56 3222333
Q ss_pred cCCccCCCCeeEEEeCCCCcce
Q 037120 296 NHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 296 ~~~~~~~~~v~~l~~~~~~~~i 317 (489)
.+... +..+.|+|||+.+
T Consensus 239 ~~~~~----~~~~~~spdg~l~ 256 (662)
T 3azo_A 239 GPEEA----IAQAEWAPDGSLI 256 (662)
T ss_dssp ETTBC----EEEEEECTTSCEE
T ss_pred CCCce----EcceEECCCCeEE
Confidence 34445 7778888877733
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-13 Score=145.13 Aligned_cols=146 Identities=9% Similarity=0.092 Sum_probs=96.5
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC----
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH---- 233 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d---- 233 (489)
..+++|+|+++ +++++ | ++|++||+..+... ..+. ... +..+.....+++|+|||+ .|+.++.+
T Consensus 19 ~~~~~w~~dg~-~~~~~--~-~~i~~~~~~~~~~~--~~~~-~~~----~~~~~~~~~~~~~Spdg~-~l~~~~~~~~~~ 86 (740)
T 4a5s_A 19 LYSLRWISDHE-YLYKQ--E-NNILVFNAEYGNSS--VFLE-NST----FDEFGHSINDYSISPDGQ-FILLEYNYVKQW 86 (740)
T ss_dssp CCCEEECSSSE-EEEEE--T-TEEEEEETTTCCEE--EEEC-TTT----TTTCCSCCCEEEECTTSS-EEEEEEEEEECS
T ss_pred ccccEECCCCc-EEEEc--C-CcEEEEECCCCceE--EEEe-chh----hhhhcccccceEECCCCC-EEEEEECCeeeE
Confidence 44599999985 55554 6 99999999544211 1111 000 011222345689999999 88888865
Q ss_pred -----CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccc-eeecCCccC------
Q 037120 234 -----GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSA-PFHNHKEVC------ 301 (489)
Q Consensus 234 -----g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~-~~~~~~~~~------ 301 (489)
+.+.+||+.+++ +. .+..|...+...+|+|||+.|+.+ .|+.|++||+.+++... +..++....
T Consensus 87 r~~~~~~~~~~d~~~~~--~~-~l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~ 162 (740)
T 4a5s_A 87 RHSYTASYDIYDLNKRQ--LI-TEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITD 162 (740)
T ss_dssp SSCEEEEEEEEETTTTE--EC-CSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCC
T ss_pred EEccceEEEEEECCCCc--EE-EcccCCCcceeeEECCCCCEEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCccc
Confidence 567799999876 33 345667789999999999998877 57899999998876532 122222110
Q ss_pred -------CCCeeEEEeCCCCcceee
Q 037120 302 -------HLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 302 -------~~~v~~l~~~~~~~~i~~ 319 (489)
.....++.|+|||+.|+.
T Consensus 163 ~v~~ee~~~~~~~~~wSpDg~~la~ 187 (740)
T 4a5s_A 163 WVYEEEVFSAYSALWWSPNGTFLAY 187 (740)
T ss_dssp HHHHHHTSSSSBCEEECTTSSEEEE
T ss_pred ccccchhcCCCcceEECCCCCEEEE
Confidence 001235889999988865
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-11 Score=112.39 Aligned_cols=156 Identities=11% Similarity=-0.011 Sum_probs=103.0
Q ss_pred ceeEEEECCCCcEEE-EEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 98 GISALDFDCKGIYLV-SATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 98 ~V~~~~fs~~g~~la-~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
...+++++++|++++ +.+.++.|.+||..+...... . ..+... +.++++.+++. ++++..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~--------~------~~~~~~---p~~i~~~~~g~-l~v~~~- 85 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL--------P------FNGLYQ---PQGLAVDGAGT-VYVTDF- 85 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC--------C------CCSCCS---CCCEEECTTCC-EEEEET-
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE--------e------eCCcCC---cceeEECCCCC-EEEEcC-
Confidence 578899999999777 557789999998765322110 0 011122 56699999875 666666
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~ 256 (489)
+ +.|.+||..... ..... ......+..+++.+++. ++++...++.|.+||..+.. .........
T Consensus 86 ~-~~i~~~d~~~~~------~~~~~------~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~--~~~~~~~~~ 149 (270)
T 1rwi_B 86 N-NRVVTLAAGSNN------QTVLP------FDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKT--QTVLPFTGL 149 (270)
T ss_dssp T-TEEEEECTTCSC------CEECC------CCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCS--CEECCCCSC
T ss_pred C-CEEEEEeCCCce------Eeeee------cCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCce--eEeeccccC
Confidence 5 899999973221 11000 12224688999999988 88877778999999866543 221122223
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEEcCCC
Q 037120 257 GTLNSIQLHAENQIIFAAGKHGSIYLWDLRGG 288 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~ 288 (489)
..+..++++|+|++.++...++.|.+||....
T Consensus 150 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~ 181 (270)
T 1rwi_B 150 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 181 (270)
T ss_dssp CSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred CCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence 46788999999986666666889999998754
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.2e-13 Score=129.66 Aligned_cols=182 Identities=8% Similarity=-0.086 Sum_probs=108.4
Q ss_pred eeEEEECCCCcEEEEEecC---CeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 99 ISALDFDCKGIYLVSATRS---GCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~d---g~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
+.+++|+|||++||..... ..|.+||+.+.+..... ..+... ...+.|+|+++ .|+.++
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~--------------~~~~~~---~~~~~~spdg~-~l~~~~ 99 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLT--------------EGKGDN---TFGGFISTDER-AFFYVK 99 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECC--------------CSSCBC---TTTCEECTTSS-EEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEee--------------cCCCCc---cccceECCCCC-EEEEEE
Confidence 6778999999998877653 36888888774432210 011111 22378999997 555555
Q ss_pred cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeE-------------------EEEecCCCcEEEEE-----e
Q 037120 176 TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSD-------------------LAFSAVNTSRLIAS-----D 231 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-------------------~~~~~~~~~~l~s~-----s 231 (489)
.+ +.|.+||+..+. ...+.. .+...... +.|+|+++ .++.. .
T Consensus 100 ~~-~~l~~~d~~~~~--~~~~~~----------~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~-~~~~~~~~~~~ 165 (396)
T 3c5m_A 100 NE-LNLMKVDLETLE--EQVIYT----------VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS-WEKFAEFYHTN 165 (396)
T ss_dssp TT-TEEEEEETTTCC--EEEEEE----------CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS-HHHHHHHHHTC
T ss_pred cC-CcEEEEECCCCC--cEEEEe----------cccccCCCCCEEEeccCCccccccccccccCCCCc-ceeeeeeccCC
Confidence 55 799999984331 111111 01111111 34677777 44433 4
Q ss_pred CCCcEEEEECCCCCcCceeeccCCCCceeEEEEee-cCCEEEEEeCC------CeEEEEEcCCCcccceeecCCccCCCC
Q 037120 232 THGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHA-ENQIIFAAGKH------GSIYLWDLRGGRTSAPFHNHKEVCHLP 304 (489)
Q Consensus 232 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~~~~~d------g~i~lwd~~~~~~~~~~~~~~~~~~~~ 304 (489)
.+..|++||+.+++. .. ...+...+..+.|+| ++..++..+.+ ..|.+||+.+++. ..+..+... ..
T Consensus 166 ~~~~l~~~d~~~g~~--~~-~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~--~~ 239 (396)
T 3c5m_A 166 PTCRLIKVDIETGEL--EV-IHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEG--ES 239 (396)
T ss_dssp CCEEEEEEETTTCCE--EE-EEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTT--EE
T ss_pred CcceEEEEECCCCcE--Ee-eccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCC--cc
Confidence 567899999988762 22 224567789999999 78877666542 4688899876543 222222100 11
Q ss_pred eeEEEeCCCCccee
Q 037120 305 LTSLKLASMLEKIG 318 (489)
Q Consensus 305 v~~l~~~~~~~~i~ 318 (489)
+..+.|+|+|+.++
T Consensus 240 ~~~~~~spdg~~l~ 253 (396)
T 3c5m_A 240 CTHEFWIPDGSAMA 253 (396)
T ss_dssp EEEEEECTTSSCEE
T ss_pred ccceEECCCCCEEE
Confidence 66677777776654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-12 Score=123.66 Aligned_cols=122 Identities=7% Similarity=-0.039 Sum_probs=76.6
Q ss_pred ceeEEEECCCCcEEE-EEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 98 GISALDFDCKGIYLV-SATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 98 ~V~~~~fs~~g~~la-~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
.+..++|+|+|++++ ++..++.|.+||+.+.+..... ..... ...+... +.+++|+|+++.++++...
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~-------~~~~~-~~~~~~~---~~~~~~spdg~~l~~~~~~ 112 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA-------NLSSV-PGEVGRS---MYSFAISPDGKEVYATVNP 112 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE-------ESCCS-TTEEEEC---SSCEEECTTSSEEEEEEEE
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE-------Ecccc-ccccccc---ccceEECCCCCEEEEEccc
Confidence 477899999998664 5556899999999875443210 00000 0000111 5669999999755555542
Q ss_pred -----------CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCC
Q 037120 177 -----------RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGV 245 (489)
Q Consensus 177 -----------d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 245 (489)
+ +.|.+||+.... .......+ . +...+.+++|+|+++ +++ ++ +.|.+||+.+++
T Consensus 113 ~~~~~~~~~~~~-~~i~~~d~~~~~-----~~~~~~~~----~-~~~~~~~~~~s~dg~-l~~-~~--~~i~~~d~~~~~ 177 (349)
T 1jmx_B 113 TQRLNDHYVVKP-PRLEVFSTADGL-----EAKPVRTF----P-MPRQVYLMRAADDGS-LYV-AG--PDIYKMDVKTGK 177 (349)
T ss_dssp EEECSSCEEECC-CEEEEEEGGGGG-----GBCCSEEE----E-CCSSCCCEEECTTSC-EEE-ES--SSEEEECTTTCC
T ss_pred ccccccccccCC-CeEEEEECCCcc-----ccceeeec----c-CCCcccceeECCCCc-EEE-cc--CcEEEEeCCCCc
Confidence 3 899999995421 11111111 1 233688999999998 555 43 349999998876
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-11 Score=129.60 Aligned_cols=161 Identities=11% Similarity=0.059 Sum_probs=106.1
Q ss_pred ceeEEEECCCCcEEEEEecCC-----eEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 98 GISALDFDCKGIYLVSATRSG-----CLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg-----~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
.+..++|||||++||.+..++ .|+|||+.+++.... . ..+ .. +..++|+|+++.+++
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--------~------~~~-~~---~~~~~wspDg~~l~~ 187 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--------V------LER-VK---FSCMAWTHDGKGMFY 187 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--------E------EEE-EC---SCCEEECTTSSEEEE
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--------c------ccC-cc---cceEEEEeCCCEEEE
Confidence 488999999999999877644 899999998554331 0 001 11 455999999975555
Q ss_pred EEecCCCE----------------EEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeC----
Q 037120 173 CASTRSNV----------------VSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT---- 232 (489)
Q Consensus 173 s~~~d~g~----------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~---- 232 (489)
+.. + +. |++|++....... . .+.....|...+..+.|+|+|+ .|+.++.
T Consensus 188 ~~~-~-~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~--~------~v~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~ 256 (710)
T 2xdw_A 188 NAY-P-QQDGKSDGTETSTNLHQKLYYHVLGTDQSED--I------LCAEFPDEPKWMGGAELSDDGR-YVLLSIREGCD 256 (710)
T ss_dssp EEC-C-CCSSCCSSSCCCCCCCCEEEEEETTSCGGGC--E------EEECCTTCTTCEEEEEECTTSC-EEEEEEECSSS
T ss_pred EEE-C-CccccccccccccCCCCEEEEEECCCCcccc--e------EEeccCCCCeEEEEEEEcCCCC-EEEEEEEccCC
Confidence 544 3 33 9999994432111 1 1111233556688999999999 6665553
Q ss_pred -CCcEEEEECCC------CCcCceeeccCCCCceeEEEEeecCCEEEEEeC----CCeEEEEEcCCCc
Q 037120 233 -HGVVNIWDRRV------GVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK----HGSIYLWDLRGGR 289 (489)
Q Consensus 233 -dg~i~iwd~~~------~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~----dg~i~lwd~~~~~ 289 (489)
+..|++||+.+ +... .+.+..+...+.. .|+|+|..++..+. .+.|.+||+.++.
T Consensus 257 ~~~~l~~~d~~~~~~~~~~~~~-~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 322 (710)
T 2xdw_A 257 PVNRLWYCDLQQESNGITGILK-WVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE 322 (710)
T ss_dssp SCCEEEEEEGGGSSSSSCSSCC-CEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred CccEEEEEECcccccccCCccc-eEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 57899999986 4211 2234455555554 58899998877765 3369999988753
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.47 E-value=8.4e-12 Score=115.59 Aligned_cols=156 Identities=8% Similarity=-0.018 Sum_probs=104.8
Q ss_pred CceeEEEECCCCc-EEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 97 PGISALDFDCKGI-YLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 97 ~~V~~~~fs~~g~-~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
....+++|+|+|+ +++++..++.|.+||..+. ... + ..+... +.+++|++++. ++++..
T Consensus 28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~~---------~------~~~~~~---~~~l~~~~dg~-l~v~~~ 87 (296)
T 3e5z_A 28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LSP---------E------MHPSHH---QNGHCLNKQGH-LIACSH 87 (296)
T ss_dssp SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EEE---------E------ESSCSS---EEEEEECTTCC-EEEEET
T ss_pred ccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eEE---------E------ECCCCC---cceeeECCCCc-EEEEec
Confidence 3467899999998 7888889999999999874 111 1 112222 78899999986 666666
Q ss_pred cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeC-----------------CCcEEE
Q 037120 176 TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT-----------------HGVVNI 238 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~-----------------dg~i~i 238 (489)
.+ +.|.+||...+.. ..+... . .......++++++.|+|. ++++.+. .+.|..
T Consensus 88 ~~-~~i~~~d~~~g~~---~~~~~~--~---~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~ 157 (296)
T 3e5z_A 88 GL-RRLERQREPGGEW---ESIADS--F---EGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFR 157 (296)
T ss_dssp TT-TEEEEECSTTCCE---EEEECE--E---TTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEE
T ss_pred CC-CeEEEEcCCCCcE---EEEeec--c---CCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEE
Confidence 55 8999999843311 111100 0 011223577899999998 7776321 345666
Q ss_pred EECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcC
Q 037120 239 WDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLR 286 (489)
Q Consensus 239 wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~ 286 (489)
+|.. ++ +.....+....+.++|+|+++.+++.+.++.|++||+.
T Consensus 158 ~~~~-g~---~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~ 201 (296)
T 3e5z_A 158 LAPD-GT---LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLN 201 (296)
T ss_dssp ECTT-SC---EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred ECCC-CC---EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEEC
Confidence 6654 33 22334555677899999999998666668999999987
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.44 E-value=7.1e-12 Score=129.90 Aligned_cols=164 Identities=11% Similarity=-0.027 Sum_probs=101.1
Q ss_pred EEEEC--CCCcE-EEEEec-CCeEEEEeCC--C-cccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 101 ALDFD--CKGIY-LVSATR-SGCLTVHDFE--S-LYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 101 ~~~fs--~~g~~-la~g~~-dg~i~vwd~~--~-~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
...|+ |||+. ||.++. +..|.++++. . ..... +.... ...|... +.+++|+|+++.++++
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~---------l~~~~-~~~~~~~---~~~~~~spDg~~l~~~ 147 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRP---------LTPVS-AVGGGLR---WADPVLLPERGEVWCM 147 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEE---------CSCCC-CSTTCEE---EEEEEEETTTTEEEEE
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEe---------ccCCc-cCCCCcc---ccCcEECCCCCEEEEE
Confidence 44454 99998 776654 5566666665 1 22111 11100 0002222 7889999999755544
Q ss_pred EecCC---------CEEEEEEeccCC----CCCceeeeeceeeeeecC-CcccCeeEEEEecCCCcEEEEEeCC------
Q 037120 174 ASTRS---------NVVSIYDIGYIS----DEPVEVLKTRRSVTVVGS-DVQKGLSDLAFSAVNTSRLIASDTH------ 233 (489)
Q Consensus 174 ~~~d~---------g~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~s~d------ 233 (489)
.. +. ..|.+||+.... ... .. +. .+...+..++|+|||+ .|+.++.+
T Consensus 148 ~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------~~----l~~~~~~~~~~~~~SpDG~-~la~~~~~~~~~~~ 214 (662)
T 3azo_A 148 AE-EFTGEGPSDVRRFLAAVPLDGSAAADRSAV-------RE----LSDDAHRFVTGPRLSPDGR-QAVWLAWDHPRMPW 214 (662)
T ss_dssp EE-EECSSSTTCEEEEEEEEETTSTTTTCGGGS-------EE----SSCSCSSEECCCEECTTSS-EEEEEEECTTCCTT
T ss_pred Ee-cccCCCCCCceeEEEEEECCCCccccCCce-------eE----EEecCCCcccCceECCCCC-EEEEEECCCCCCCC
Confidence 43 20 478999984310 111 11 13 3445788899999999 77777644
Q ss_pred --CcEEEEECC-CCCc-CceeeccCCCCceeEEEEeecCCEEEEEeCCC--eEEEEEcCCCcc
Q 037120 234 --GVVNIWDRR-VGVL-PSLELSTGSHGTLNSIQLHAENQIIFAAGKHG--SIYLWDLRGGRT 290 (489)
Q Consensus 234 --g~i~iwd~~-~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg--~i~lwd~~~~~~ 290 (489)
..|++||+. ++.. ........|...+..++|+|+|++++++..++ .|.+||+.+++.
T Consensus 215 ~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~ 277 (662)
T 3azo_A 215 EGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAA 277 (662)
T ss_dssp TCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCE
T ss_pred CCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCce
Confidence 379999998 4521 13333345578899999999999777776688 677777766654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-11 Score=129.28 Aligned_cols=159 Identities=11% Similarity=0.055 Sum_probs=100.3
Q ss_pred ceeEEEECCCCcEEE-----EEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 98 GISALDFDCKGIYLV-----SATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 98 ~V~~~~fs~~g~~la-----~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
.+.+++|||||++|| .|+.+..|++||+.+++.... . +.... ....++|+|+++ .|+
T Consensus 122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~----------~------~~~~~-~~~~~~wspDg~-~l~ 183 (695)
T 2bkl_A 122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV----------D------VIEGG-KYATPKWTPDSK-GFY 183 (695)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS----------C------CBSCC-TTCCCEECTTSS-EEE
T ss_pred EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC----------c------ccCcc-cccceEEecCCC-EEE
Confidence 488999999999999 444457899999998544310 0 00010 014589999997 455
Q ss_pred EEecCCCE-------------EEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCC----c
Q 037120 173 CASTRSNV-------------VSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG----V 235 (489)
Q Consensus 173 s~~~d~g~-------------i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg----~ 235 (489)
.++.| .. |++|++....... ..+....+|...+..+.|+|+|+ .|+.++.++ .
T Consensus 184 ~~~~d-~~~~~~~~~~~~~~~v~~~~l~t~~~~~--------~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~ 253 (695)
T 2bkl_A 184 YEWLP-TDPSIKVDERPGYTTIRYHTLGTEPSKD--------TVVHERTGDPTTFLQSDLSRDGK-YLFVYILRGWSEND 253 (695)
T ss_dssp EEECC-CCTTSCGGGGGGGCEEEEEETTSCGGGC--------EEEECCCCCTTCEEEEEECTTSC-CEEEEEEETTTEEE
T ss_pred EEEec-CCCCCccccCCCCCEEEEEECCCCchhc--------eEEEecCCCCEEEEEEEECCCCC-EEEEEEeCCCCceE
Confidence 55544 44 9999995432211 11122244666889999999999 666555454 6
Q ss_pred EEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC----CCeEEEEEcCCCc
Q 037120 236 VNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK----HGSIYLWDLRGGR 289 (489)
Q Consensus 236 i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~----dg~i~lwd~~~~~ 289 (489)
|++||..+++ .. .+..+...+....+ ++|. ++..+. ++.|.+||+.+++
T Consensus 254 l~~~~~~~~~--~~-~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 254 VYWKRPGEKD--FR-LLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp EEEECTTCSS--CE-EEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCS
T ss_pred EEEEcCCCCc--eE-EeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCC
Confidence 7777665443 22 33344555666666 6666 555443 5889999987654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.7e-11 Score=115.54 Aligned_cols=180 Identities=9% Similarity=0.024 Sum_probs=116.2
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
.|.+++|++++..++..+.++.+++|.-.. .. .+. .+... +.+++|++++. +++++..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--------~~~------~~~~~---~~~~~~~~~g~-l~~~~~~~ 65 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTITAEP---WL--------EIS------KKGLQ---LEGLNFDRQGQ-LFLLDVFE 65 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEEECEE---EE--------EEE------SSCCC---EEEEEECTTSC-EEEEETTT
T ss_pred ccceeeecCCccceeEEeecccCcccccce---eE--------EEe------ccCcc---ccCcEECCCCC-EEEEECCC
Confidence 477888999988888778888899993221 11 011 11122 77899999886 77777766
Q ss_pred CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC----CcEEEEECCCCCcCceeecc
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH----GVVNIWDRRVGVLPSLELST 253 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~ 253 (489)
+.|.+||..... . . .+. ..+...+.+++|++++. ++++...+ +.|.+||..++....+....
T Consensus 66 -~~i~~~d~~~~~-----~-~---~~~---~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~ 131 (333)
T 2dg1_A 66 -GNIFKINPETKE-----I-K---RPF---VSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIEDL 131 (333)
T ss_dssp -CEEEEECTTTCC-----E-E---EEE---ECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECSS
T ss_pred -CEEEEEeCCCCc-----E-E---EEe---eCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEccC
Confidence 899999984221 1 1 010 12446799999999998 77777666 68999998876522111111
Q ss_pred CCCCceeEEEEeecCCEEEEEeC------CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGK------HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~------dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
.+...+..++++|+|+++++... .+.|..||..+++. ..+...... +..++|+|+++.+
T Consensus 132 ~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~----~~~i~~~~dg~~l 196 (333)
T 2dg1_A 132 STAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV-TPIIQNISV----ANGIALSTDEKVL 196 (333)
T ss_dssp SSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCE-EEEEEEESS----EEEEEECTTSSEE
T ss_pred ccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEE-EEeecCCCc----ccceEECCCCCEE
Confidence 23467899999999987776653 35677777665443 222222223 6778888887644
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-11 Score=116.91 Aligned_cols=161 Identities=12% Similarity=0.093 Sum_probs=100.4
Q ss_pred EEEECCCCcEEEEEe----------cCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 101 ALDFDCKGIYLVSAT----------RSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 101 ~~~fs~~g~~la~g~----------~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
.++|+|||++|.+++ .++.|.+||..+.+.... .........+... ...++|+|+++.+
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~--------i~~~~~~~~~g~~---p~~i~~spdg~~l 122 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKE--------ISLPPKRVQGLNY---DGLFRQTTDGKFI 122 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEE--------EEECTTBCCBCCC---GGGEEECTTSSEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEE--------EEcCccccccCCC---cceEEECCCCCEE
Confidence 889999999998886 367899999987544431 1000000001112 4459999999855
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeee-ceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKT-RRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
+++....+++|.+||+... +.+.. ... .....+.+.|++...+++.+.||.+.+|++..... ..
T Consensus 123 ~v~n~~~~~~v~v~d~~~~-----~~~~~~i~~---------~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~-~~ 187 (361)
T 2oiz_A 123 VLQNASPATSIGIVDVAKG-----DYVEDVTAA---------AGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGK-VA 187 (361)
T ss_dssp EEEEESSSEEEEEEETTTT-----EEEEEEGGG---------TTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSS-EE
T ss_pred EEECCCCCCeEEEEECCCC-----cEEEEEecC---------CCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCc-Ee
Confidence 5554431389999999432 33322 211 12233567888755888999999999999875321 11
Q ss_pred ------eeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCC
Q 037120 250 ------ELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGG 288 (489)
Q Consensus 250 ------~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~ 288 (489)
..+..+..++ .+.+.|++..++..+.++.|.++|+...
T Consensus 188 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~ 231 (361)
T 2oiz_A 188 SQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGD 231 (361)
T ss_dssp EEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSS
T ss_pred eeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCC
Confidence 1112222222 3344678888888888999999998754
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-11 Score=115.11 Aligned_cols=136 Identities=10% Similarity=0.102 Sum_probs=86.4
Q ss_pred ceeEEEECCCCcEEEEEe---------cCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCC
Q 037120 98 GISALDFDCKGIYLVSAT---------RSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQ 168 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~---------~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~ 168 (489)
.+...++ ||+.+|... .++.|.+||+.+..... + .. +..++|+|+++
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~---------l----------~~---~~~~~~SpDg~ 71 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF---------I----------EN---ATMPRISPDGK 71 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE---------E----------ES---CEEEEECTTSS
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE---------c----------cc---CCCeEECCCCC
Confidence 4677778 888887653 26678999988733211 1 11 77899999997
Q ss_pred CEEEEEecC-CC--EEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeC-------------
Q 037120 169 DEVACASTR-SN--VVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT------------- 232 (489)
Q Consensus 169 ~~l~s~~~d-~g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~------------- 232 (489)
.++++...+ ++ .|.+||+..+ .... . ..+.. +..++|+|+++ .|+.++.
T Consensus 72 ~la~~~~~~~~~~~~l~~~~~~~g-----~~~~----l----~~~~~-~~~~~wspdg~-~l~~~~~~~~~~~~~~~~~~ 136 (347)
T 2gop_A 72 KIAFMRANEEKKVSEIWVADLETL-----SSKK----I----LEAKN-IRSLEWNEDSR-KLLIVGFKRREDEDFIFEDD 136 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEETTTT-----EEEE----E----EEESE-EEEEEECTTSS-EEEEEEECCCC---------
T ss_pred EEEEEEeccCCCcceEEEEECCCC-----ceEE----E----EcCCC-ccceeECCCCC-EEEEEEccCCCcCCcEEEcc
Confidence 555444321 03 4667776321 1111 1 11223 88999999999 6766653
Q ss_pred --------------CCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCC
Q 037120 233 --------------HGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKH 277 (489)
Q Consensus 233 --------------dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~d 277 (489)
...|++||+.+++ .++.+.. . .+..++|+|+| +++++..+
T Consensus 137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~--~~~~l~~-~-~~~~~~~spdg-~~~~~~~~ 190 (347)
T 2gop_A 137 VPAWFDDLGFFDGEKTTFWIFDTESEE--VIEEFEK-P-RFSSGIWHRDK-IVVNVPHR 190 (347)
T ss_dssp CCCC---------CEEEEEEEETTTTE--EEEEEEE-E-TTCEEEEETTE-EEEEEECC
T ss_pred cceeecCcccccCccceEEEEECCCCe--EEeeecC-C-CcccccCCCCe-EEEEEecc
Confidence 2579999998876 3122222 3 78899999999 77777553
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.40 E-value=4.6e-11 Score=115.03 Aligned_cols=156 Identities=8% Similarity=-0.077 Sum_probs=101.3
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEE--eeCCCCCEEEEE--
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVR--WNLANQDEVACA-- 174 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~--~~~~~~~~l~s~-- 174 (489)
+..++|+|||+.|+.++.++.|++||+.+.+.... . ..+... +.... ++|++. +++..
T Consensus 83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~--------~------~~~~~~---~~~~~~~~~~dg~-~l~~~~~ 144 (388)
T 3pe7_A 83 TFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVV--------Y------QVPAEW---VGYGTWVANSDCT-KLVGIEI 144 (388)
T ss_dssp SSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEE--------E------ECCTTE---EEEEEEEECTTSS-EEEEEEE
T ss_pred ccceEEcCCCCEEEEEeCCCeEEEEECCCCcceee--------e------echhhc---ccccceeECCCCC-eeccccc
Confidence 44678999999999999999999999988543321 0 111111 33333 478876 44422
Q ss_pred --------------------ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEec-CCCcEEEEEeCC
Q 037120 175 --------------------STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSA-VNTSRLIASDTH 233 (489)
Q Consensus 175 --------------------~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~s~d 233 (489)
..+ ..|.+||+..+ +. .. . ..+...+..++|+| ++. .|+.+..+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~d~~~g--~~-~~------l----~~~~~~~~~~~~sp~dg~-~l~~~~~~ 209 (388)
T 3pe7_A 145 RREDWVPLTDWKKFHEFYFTKPC-CRLMRVDLKTG--ES-TV------I----LQENQWLGHPIYRPYDDS-TVAFCHEG 209 (388)
T ss_dssp EGGGCCCCCSHHHHHHHGGGCCC-EEEEEEETTTC--CE-EE------E----EEESSCEEEEEEETTEEE-EEEEEECS
T ss_pred cCcccccccccchhhhhhccCCc-ceEEEEECCCC--ce-EE------e----ecCCccccccEECCCCCC-EEEEEEec
Confidence 122 68999998433 11 11 1 22445788999999 998 77766643
Q ss_pred ------CcEEEEECCCCCcCceeeccCCC--CceeEEEEeecCCEEEEEeC-CC----eEEEEEcCCCcc
Q 037120 234 ------GVVNIWDRRVGVLPSLELSTGSH--GTLNSIQLHAENQIIFAAGK-HG----SIYLWDLRGGRT 290 (489)
Q Consensus 234 ------g~i~iwd~~~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~~~~~-dg----~i~lwd~~~~~~ 290 (489)
..|.++|...++ .. .+..+. ..+..++|+|+|+.|+..+. ++ .|++||+.+++.
T Consensus 210 ~~~~~~~~l~~~d~~~~~--~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~ 276 (388)
T 3pe7_A 210 PHDLVDARMWLINEDGTN--MR-KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLEN 276 (388)
T ss_dssp CTTTSSCSEEEEETTSCC--CE-ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCE
T ss_pred CCCCCcceEEEEeCCCCc--eE-EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCce
Confidence 378888887654 22 222333 35778999999998766544 22 499999998864
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=6.4e-09 Score=95.84 Aligned_cols=185 Identities=7% Similarity=-0.036 Sum_probs=120.4
Q ss_pred CCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
....+.+++++++|+++++...++.|.+||.. ....... .. .+.. .+.++++.+++. ++++.
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~-------~~------~~~~---~~~~i~~~~~g~-l~v~~ 74 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYP-------LP------TPDA---KVMCLTISSDGE-VWFTE 74 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEE-------CS------STTC---CEEEEEECTTSC-EEEEE
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEec-------CC------cccC---ceeeEEECCCCC-EEEeC
Confidence 34569999999999988877768899999987 3222100 00 0111 288899999875 66665
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccC
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 254 (489)
..+ +.|..||.. + . +. .+. +......+.++++.+++. ++++...++.|..||. +++.... ....
T Consensus 75 ~~~-~~i~~~~~~-g--~----~~---~~~--~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~-~~~~ 138 (299)
T 2z2n_A 75 NAA-NKIGRITKK-G--I----IK---EYT--LPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREY-ELPN 138 (299)
T ss_dssp TTT-TEEEEECTT-S--C----EE---EEE--CSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEE-ECSS
T ss_pred CCC-CeEEEECCC-C--c----EE---EEe--CCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEe-cCCC
Confidence 545 899999873 1 1 11 110 122345788999999887 7777777889999998 5442211 1122
Q ss_pred CCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccce-eecCCccCCCCeeEEEeCCCCccee
Q 037120 255 SHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAP-FHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~-~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
+...+..++++++|...++...++.|..||. +++.... +...... +.+++++++|....
T Consensus 139 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~----~~~i~~~~~g~l~v 198 (299)
T 2z2n_A 139 KGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASG----PVGITKGNDDALWF 198 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCC----EEEEEECTTSSEEE
T ss_pred CCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCc----ceeEEECCCCCEEE
Confidence 3456889999999987776666889999998 6553221 1222222 66777777766443
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-09 Score=108.85 Aligned_cols=290 Identities=13% Similarity=0.092 Sum_probs=163.1
Q ss_pred ECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEE
Q 037120 104 FDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSI 183 (489)
Q Consensus 104 fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~v 183 (489)
.++.+.++++...++.|.|+|..+.+.... +. .+..+..+.|+|++..++ +++.| +.|.+
T Consensus 163 ~d~~~~~~V~~~~~~~V~viD~~t~~v~~~--------i~----------~g~~p~~v~~SpDGr~ly-v~~~d-g~V~v 222 (567)
T 1qks_A 163 WDLENLFSVTLRDAGQIALIDGSTYEIKTV--------LD----------TGYAVHISRLSASGRYLF-VIGRD-GKVNM 222 (567)
T ss_dssp CCGGGEEEEEETTTTEEEEEETTTCCEEEE--------EE----------CSSCEEEEEECTTSCEEE-EEETT-SEEEE
T ss_pred cCCCceEEEEeCCCCeEEEEECCCCeEEEE--------Ee----------CCCCccceEECCCCCEEE-EEcCC-CeEEE
Confidence 445566777788899999999998544431 10 011156799999997544 45556 99999
Q ss_pred EEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEe----cCCCcEEEEEeCCCcEEEEECCCCCcCceeeccC-----
Q 037120 184 YDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFS----AVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTG----- 254 (489)
Q Consensus 184 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~----~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----- 254 (489)
||+..... ..+.... .+ .....++|+ |+|+..+++...+++|.++|..+.+ .++.+..
T Consensus 223 iD~~~~t~---~~v~~i~------~G--~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~--~~~~i~~~~~~~ 289 (567)
T 1qks_A 223 IDLWMKEP---TTVAEIK------IG--SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE--PKKIQSTRGMTY 289 (567)
T ss_dssp EETTSSSC---CEEEEEE------CC--SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC--EEEEEECCEECT
T ss_pred EECCCCCC---cEeEEEe------cC--CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCc--EEEEEecccccc
Confidence 99841111 2222211 11 135689999 6999444444577999999988866 4433321
Q ss_pred -----C-CCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceee
Q 037120 255 -----S-HGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIV 327 (489)
Q Consensus 255 -----h-~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~ 327 (489)
| ...+..+..++++..++..-. +|.|.++|....+.+.. +.+. .
T Consensus 290 ~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v------------~~i~-----------------~ 340 (567)
T 1qks_A 290 DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKT------------TEIS-----------------A 340 (567)
T ss_dssp TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEE------------EEEE-----------------C
T ss_pred ccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcccee------------eeee-----------------c
Confidence 1 125778888888776555544 89999999876542111 1110 0
Q ss_pred ccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCC-CCCCcCCCCccccccCCCccee-ecCCcEEEEeec-C
Q 037120 328 SQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCP-PPAWLSDSNNSADQLHLRKPSW-LSTNSIYAVGSS-S 404 (489)
Q Consensus 328 ~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~sgs-~ 404 (489)
......+.|+|+++++++.....+-..+++..++.+...... .....+ -+...| .|+++.+.+++. .
T Consensus 341 ~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Php----------g~g~~~~~p~~g~v~~t~~~g 410 (567)
T 1qks_A 341 ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHP----------GRGANFVHPTFGPVWATSHMG 410 (567)
T ss_dssp CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCC----------TTCEEEEETTTEEEEEEEBSS
T ss_pred cccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCC----------ccceeeECCCCCcEEEeCCCC
Confidence 011234456666666655554433223444444433221111 000000 022333 456566665543 5
Q ss_pred CCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccC-------cceeEEEec
Q 037120 405 DHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTK-------NSSLLVVSQ 477 (489)
Q Consensus 405 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~-------dg~i~v~~~ 477 (489)
++.|.|+|..+....... -+.++.+. .....-..+.+||+++.+.+... ..+|.||..
T Consensus 411 ~~~Vsvid~~~~~~~~~~---~kvv~~i~------------~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~ 475 (567)
T 1qks_A 411 DDSVALIGTDPEGHPDNA---WKILDSFP------------ALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDI 475 (567)
T ss_dssp SSEEEEEECCTTTCTTTB---TSEEEEEE------------CSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEG
T ss_pred CCeEEEecCCCCCCcccc---CEEEEEEe------------cCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEEC
Confidence 689999998873100000 02333333 22233355789999986666442 468999887
Q ss_pred ccc
Q 037120 478 KQQ 480 (489)
Q Consensus 478 ~~~ 480 (489)
+..
T Consensus 476 ~~~ 478 (567)
T 1qks_A 476 KAM 478 (567)
T ss_dssp GGC
T ss_pred Ccc
Confidence 654
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=3.6e-11 Score=114.99 Aligned_cols=178 Identities=16% Similarity=0.078 Sum_probs=109.9
Q ss_pred CCceeEEEECCCCcEEEEEec-CCeEEEEeCC-CcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 96 KPGISALDFDCKGIYLVSATR-SGCLTVHDFE-SLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~~-dg~i~vwd~~-~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
...+.+++|+|+|++|+++.. ++.|++|++. +++... ........ .+..+..++|+|+++.++++
T Consensus 144 ~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~------------~~~~~~~~-~g~~p~~~~~spdg~~l~v~ 210 (365)
T 1jof_A 144 NTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVEL------------VGSVDAPD-PGDHPRWVAMHPTGNYLYAL 210 (365)
T ss_dssp TCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEE------------EEEEECSS-TTCCEEEEEECTTSSEEEEE
T ss_pred CCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEE------------eeeEecCC-CCCCCCEeEECCCCCEEEEE
Confidence 345899999999998887764 6899999997 432211 00011000 01227889999999745444
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCccc------CeeEEE-EecCCCcEEEEEeC-CC-----cEEEEE
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQK------GLSDLA-FSAVNTSRLIASDT-HG-----VVNIWD 240 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~------~v~~~~-~~~~~~~~l~s~s~-dg-----~i~iwd 240 (489)
...+ +.|.+|++....................+.+|.. .+..++ |+|+|+ +|+++.. +. .|.+||
T Consensus 211 ~~~~-~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~-~l~v~~~~~~~~~~~~i~v~~ 288 (365)
T 1jof_A 211 MEAG-NRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK-YMFASSRANKFELQGYIAGFK 288 (365)
T ss_dssp ETTT-TEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS-EEEEEEEESSTTSCCEEEEEE
T ss_pred ECCC-CeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCC-EEEEECCCCCCCCCCeEEEEE
Confidence 4444 8999999843211110000111100000123333 588999 999999 6665553 23 899999
Q ss_pred CC-CCCcCcee-eccCCCCceeEEEEee---cCCEEEEEeC-CCeEEEEEcCCC
Q 037120 241 RR-VGVLPSLE-LSTGSHGTLNSIQLHA---ENQIIFAAGK-HGSIYLWDLRGG 288 (489)
Q Consensus 241 ~~-~~~~~~~~-~~~~h~~~v~~~~~~p---~~~~l~~~~~-dg~i~lwd~~~~ 288 (489)
+. +++...+. ....+...+..++|+| +|++|++++. ++.|++|++...
T Consensus 289 ~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 289 LRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred ECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 96 44411111 1223445677899999 8999999987 599999998764
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.34 E-value=4.8e-10 Score=104.46 Aligned_cols=160 Identities=14% Similarity=0.133 Sum_probs=100.5
Q ss_pred CceeEEEECCCCcEEEE-------EecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC-CC
Q 037120 97 PGISALDFDCKGIYLVS-------ATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA-NQ 168 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~-------g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~-~~ 168 (489)
....+++|+++|.++++ ++.++.|.+||..+.+.... ..+ ...++... +.+++++++ +
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~--------~~~--~~~~~~~~---~~~i~~~~~~g- 83 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVI--------CKP--EVNGYGGI---PAGCQCDRDAN- 83 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEE--------ECC--EETTEECC---EEEEEECSSSS-
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEE--------Eec--ccCCCCCC---CceEEEecCCC-
Confidence 34678999999998888 67789999999876433221 000 00011122 788999998 5
Q ss_pred CEEEEEecCCCEEEEEEeccCCCCCceee-eeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC--------------
Q 037120 169 DEVACASTRSNVVSIYDIGYISDEPVEVL-KTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH-------------- 233 (489)
Q Consensus 169 ~~l~s~~~d~g~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d-------------- 233 (489)
.++++.. . +.|.+||.. + .. ..+ .... .......++++++.+++. ++++...+
T Consensus 84 ~l~v~~~-~-~~l~~~d~~-g--~~-~~~~~~~~-----~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~ 151 (314)
T 1pjx_A 84 QLFVADM-R-LGLLVVQTD-G--TF-EEIAKKDS-----EGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEK 151 (314)
T ss_dssp EEEEEET-T-TEEEEEETT-S--CE-EECCSBCT-----TSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSS
T ss_pred cEEEEEC-C-CCEEEEeCC-C--CE-EEEEeccC-----CCccccCCcCEEECCCCC-EEEEecCcccccccccccccCC
Confidence 3555555 3 589999984 2 11 111 0000 011234688999999998 77766554
Q ss_pred -CcEEEEECCCCCcCceeeccCCCCceeEEEEe----ecCCEEEEEe-CCCeEEEEEcC
Q 037120 234 -GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLH----AENQIIFAAG-KHGSIYLWDLR 286 (489)
Q Consensus 234 -g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~----p~~~~l~~~~-~dg~i~lwd~~ 286 (489)
+.|..||.. ++ .. ....+......++|+ |+++.++++. .++.|.+||+.
T Consensus 152 ~~~l~~~~~~-g~--~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~ 206 (314)
T 1pjx_A 152 FGSIYCFTTD-GQ--MI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIK 206 (314)
T ss_dssp CEEEEEECTT-SC--EE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEE
T ss_pred CCeEEEECCC-CC--EE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECC
Confidence 567777765 43 22 222233456889999 9997776665 48899999976
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.33 E-value=2.3e-11 Score=115.29 Aligned_cols=183 Identities=16% Similarity=0.149 Sum_probs=125.3
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
.++.+++++...+|++|+.++ +.||+++.......+.. +..++. ....... |+.|+| ++. .|+.+ .+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~~---~~~~~~--~~~~lp~---V~~l~f--d~~-~L~v~-~~ 105 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDS---TPLTFK--WEKEIPD---VIFVCF--HGD-QVLVS-TR 105 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSS---CCCCCS--EEEECTT---EEEEEE--ETT-EEEEE-ES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhcccc---ccccce--EEeeCCC---eeEEEE--CCC-EEEEE-cC
Confidence 589999999999999999985 66699876441110000 011110 0111111 889999 654 66666 55
Q ss_pred CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCC
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHG 257 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~ 257 (489)
+.|++||+...... . .. ..|...+.++.+.+ + .++.++.||.|.+||+..+. ... +..
T Consensus 106 -~~l~v~dv~sl~~~--~------~~----~~~~~~v~~i~~~~--p-~~av~~~dG~L~v~dl~~~~--~~~----~~~ 163 (388)
T 1xip_A 106 -NALYSLDLEELSEF--R------TV----TSFEKPVFQLKNVN--N-TLVILNSVNDLSALDLRTKS--TKQ----LAQ 163 (388)
T ss_dssp -SEEEEEESSSTTCE--E------EE----EECSSCEEEEEECS--S-EEEEEETTSEEEEEETTTCC--EEE----EEE
T ss_pred -CcEEEEEchhhhcc--C------cc----ceeecceeeEEecC--C-CEEEEECCCCEEEEEccCCc--ccc----ccC
Confidence 99999999543211 1 11 23455788877664 3 38888999999999999765 332 346
Q ss_pred ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc--ccee------e---cCCccCCCCeeEEEeCCCCcceeecc
Q 037120 258 TLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT--SAPF------H---NHKEVCHLPLTSLKLASMLEKIGTLK 321 (489)
Q Consensus 258 ~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~--~~~~------~---~~~~~~~~~v~~l~~~~~~~~i~~~~ 321 (489)
.|+|++|+|+| ++.|..||+|++|+...+.. ..++ . +|... |.++.|.+++.++....
T Consensus 164 ~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~----V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 164 NVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYS----PLSVTILSPQDFLAVFG 232 (388)
T ss_dssp SEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSE----EEEEEESSSSEEEEEEE
T ss_pred CceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCee----EEEEEEecCCeEEEEEc
Confidence 89999999999 67888899999999887764 4455 2 24444 99999999998886543
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=3.8e-09 Score=106.10 Aligned_cols=174 Identities=12% Similarity=0.066 Sum_probs=117.9
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCC--CcccccCCCCCCCCCcccccccccCCCCCCceeEEEee----CCCCCEE
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFE--SLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWN----LANQDEV 171 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~--~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~----~~~~~~l 171 (489)
.+..++|+|||++|.+++.|+.|.+||+. +.+.... . . .+.....++|+ |+++.++
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~--------i------~----~G~~P~~ia~s~~~~pDGk~l~ 259 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE--------I------K----IGSEARSIETSKMEGWEDKYAI 259 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE--------E------E----CCSEEEEEEECCSTTCTTTEEE
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEE--------E------e----cCCCCceeEEccccCCCCCEEE
Confidence 46789999999999999999999999995 4322221 0 0 01115569999 6988666
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecC---Cccc-CeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGS---DVQK-GLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP 247 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~h~~-~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 247 (489)
++...+ ++|.|+|.... +.+........... .|.. .+..+..+++++..+++...+|.|.++|....+..
T Consensus 260 v~n~~~-~~v~ViD~~t~-----~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~ 333 (567)
T 1qks_A 260 AGAYWP-PQYVIMDGETL-----EPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL 333 (567)
T ss_dssp EEEEET-TEEEEEETTTC-----CEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE
T ss_pred EEEccC-CeEEEEECCCC-----cEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccc
Confidence 666655 99999997332 22222111000001 1222 67889999988856666678899999999875422
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcccceeec
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~ 296 (489)
.+..+ ........+.|+|++++++++.. ++.|.++|+.+++.+..+..
T Consensus 334 ~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~v 382 (567)
T 1qks_A 334 KTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT 382 (567)
T ss_dssp EEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred eeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEec
Confidence 22222 22345668899999999988875 88999999999887665543
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.5e-10 Score=117.77 Aligned_cols=161 Identities=9% Similarity=0.049 Sum_probs=101.3
Q ss_pred ceeEEEECCCCcEEEEEecC-----CeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 98 GISALDFDCKGIYLVSATRS-----GCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~d-----g~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
.+..++|||||++||.++.+ ..|++||+.+++.... ..+... +..++|+|+ +.+++
T Consensus 164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~---------------~~~~~~---~~~~~wspD-~~l~~ 224 (741)
T 1yr2_A 164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD---------------ELKWVK---FSGLAWLGN-DALLY 224 (741)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE---------------EEEEEE---SCCCEESTT-SEEEE
T ss_pred EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc---------------cCCCce---eccEEEECC-CEEEE
Confidence 48899999999999988764 4699999998544321 000000 245899999 75555
Q ss_pred EEecCCC-------------EEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC-----C
Q 037120 173 CASTRSN-------------VVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH-----G 234 (489)
Q Consensus 173 s~~~d~g-------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d-----g 234 (489)
+.. +.. .|.+|++....... . .+.....|...+..+.|+|+|+ .|+..+.+ .
T Consensus 225 ~~~-~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~--~------lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~ 294 (741)
T 1yr2_A 225 SRF-AEPKEGQAFQALNYNQTVWLHRLGTPQSAD--Q------PVFATPELPKRGHGASVSSDGR-WVVITSSEGTDPVN 294 (741)
T ss_dssp EEC-CCC--------CCCCCEEEEEETTSCGGGC--E------EEECCTTCTTCEEEEEECTTSC-EEEEEEECTTCSCC
T ss_pred EEe-cCcccccccccCCCCCEEEEEECCCCchhC--E------EEeccCCCCeEEEEEEECCCCC-EEEEEEEccCCCcc
Confidence 543 312 48899984332111 1 1111233444688999999999 66666543 3
Q ss_pred cEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC----CCeEEEEEcCCC
Q 037120 235 VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK----HGSIYLWDLRGG 288 (489)
Q Consensus 235 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~----dg~i~lwd~~~~ 288 (489)
.|++||+.++...+...+..+...+... ++|+|+.|+..+. ++.|.+||+.++
T Consensus 295 ~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~ 351 (741)
T 1yr2_A 295 TVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGS 351 (741)
T ss_dssp EEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred eEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence 8999999876211122333444444444 3589998888776 345888998764
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=3.8e-10 Score=106.17 Aligned_cols=198 Identities=10% Similarity=-0.000 Sum_probs=121.8
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcc-cccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLY-YQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~-~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
.....++|+++|+++++...++.|++||..... ..... +.......-..+... ...++++|++..++++.+
T Consensus 91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~-----~~~~~~g~~~~~~~~---P~~ia~~~~~g~lyv~d~ 162 (329)
T 3fvz_A 91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLIL-----GRSMQPGSDQNHFCQ---PTDVAVEPSTGAVFVSDG 162 (329)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEE-----SBTTBCCCSTTCCSS---EEEEEECTTTCCEEEEEC
T ss_pred CCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEe-----cccCCCCCCccccCC---CcEEEEeCCCCeEEEEeC
Confidence 458899999999999999999999999987531 11100 000000000112222 778999994345777775
Q ss_pred -cCCCEEEEEEeccCCCCCceeeeeceeeee---ecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 176 -TRSNVVSIYDIGYISDEPVEVLKTRRSVTV---VGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 176 -~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
.+ +.|++||.. + ..+......-. ...++......|++.|++..++++...++.|++||..+++ .+..
T Consensus 163 ~~~-~~I~~~~~~-g-----~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~--~~~~ 233 (329)
T 3fvz_A 163 YCN-SRIVQFSPS-G-----KFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKE--FVRE 233 (329)
T ss_dssp SSC-CEEEEECTT-S-----CEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCC--EEEE
T ss_pred CCC-CeEEEEcCC-C-----CEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCc--EEEE
Confidence 46 899999952 1 11111110000 0012334588999999944377888889999999998766 4444
Q ss_pred c--cCCCCceeEEEEee------cCCEEEEEeCCCeEEEEEcCCCcccceee---cCCccCCCCeeEEEeCCCCc
Q 037120 252 S--TGSHGTLNSIQLHA------ENQIIFAAGKHGSIYLWDLRGGRTSAPFH---NHKEVCHLPLTSLKLASMLE 315 (489)
Q Consensus 252 ~--~~h~~~v~~~~~~p------~~~~l~~~~~dg~i~lwd~~~~~~~~~~~---~~~~~~~~~v~~l~~~~~~~ 315 (489)
+ ..+...+..++|+| +++..++...+..|++||+.+++.+..+. .+... ...|+++|+|.
T Consensus 234 ~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~----p~~ia~~~dG~ 304 (329)
T 3fvz_A 234 IKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDM----PHDIVASEDGT 304 (329)
T ss_dssp ECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSS----EEEEEECTTSE
T ss_pred EeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCC----eeEEEECCCCC
Confidence 3 24556788999999 33333333335689999999988776663 22222 55555555553
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.9e-10 Score=110.89 Aligned_cols=193 Identities=8% Similarity=-0.082 Sum_probs=110.5
Q ss_pred eEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCc----eeEEEeeCCCCCEEEEE-
Q 037120 100 SALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQ----LDAVRWNLANQDEVACA- 174 (489)
Q Consensus 100 ~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~----V~~v~~~~~~~~~l~s~- 174 (489)
..+.|+|||++|+.++.++.|.+||+.+.+.......+. ...+......-...... ...++|+|++..+++..
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~--~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~ 161 (396)
T 3c5m_A 84 FGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDE--EWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEF 161 (396)
T ss_dssp TTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCT--TEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred ccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEeccc--ccCCCCCEEEeccCCccccccccccccCCCCcceeeeee
Confidence 347899999999999999999999998754322100000 00000000000000000 00035678776444332
Q ss_pred ---ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEec-CCCcEEEEEeCC------CcEEEEECCCC
Q 037120 175 ---STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSA-VNTSRLIASDTH------GVVNIWDRRVG 244 (489)
Q Consensus 175 ---~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~s~d------g~i~iwd~~~~ 244 (489)
..+ ..|.+||+..+ +. .. . ..+...+..+.|+| ++. .|+..+.+ ..|.+||+..+
T Consensus 162 ~~~~~~-~~l~~~d~~~g--~~-~~------~----~~~~~~~~~~~~sp~dg~-~l~~~~~~~~~~~~~~l~~~d~~~~ 226 (396)
T 3c5m_A 162 YHTNPT-CRLIKVDIETG--EL-EV------I----HQDTAWLGHPIYRPFDDS-TVGFCHEGPHDLVDARMWLVNEDGS 226 (396)
T ss_dssp HHTCCC-EEEEEEETTTC--CE-EE------E----EEESSCEEEEEEETTEEE-EEEEEECSCSSSCSCCCEEEETTSC
T ss_pred ccCCCc-ceEEEEECCCC--cE-Ee------e----ccCCcccccceECCCCCC-EEEEEecCCCCCCCceEEEEECCCC
Confidence 333 78999998432 11 11 1 12445788999999 676 66665543 46888998765
Q ss_pred CcCceeeccCC-CCceeEEEEeecCCEEEEEeCC-----CeEEEEEcCCCcccceeecCCccCCCCeeEEEeCC-CCcce
Q 037120 245 VLPSLELSTGS-HGTLNSIQLHAENQIIFAAGKH-----GSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLAS-MLEKI 317 (489)
Q Consensus 245 ~~~~~~~~~~h-~~~v~~~~~~p~~~~l~~~~~d-----g~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~i 317 (489)
+ ........ ...+..++|+|+|+.|+.++.+ +.|++||+.+++... +.... . .. +.|+| +|+.+
T Consensus 227 ~--~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-l~~~~-~----~~-~~~s~~dg~~l 297 (396)
T 3c5m_A 227 N--VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEE-VMVMP-P----CS-HLMSNFDGSLM 297 (396)
T ss_dssp C--CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEE-EEECC-S----EE-EEEECSSSSEE
T ss_pred c--eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEE-eeeCC-C----CC-CCccCCCCceE
Confidence 4 22222211 2357889999999988777553 559999998876422 22111 1 33 77777 77755
Q ss_pred e
Q 037120 318 G 318 (489)
Q Consensus 318 ~ 318 (489)
+
T Consensus 298 ~ 298 (396)
T 3c5m_A 298 V 298 (396)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.1e-09 Score=99.78 Aligned_cols=278 Identities=8% Similarity=-0.056 Sum_probs=155.2
Q ss_pred cCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCce
Q 037120 116 RSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVE 195 (489)
Q Consensus 116 ~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~ 195 (489)
.+++|.++|.++.+.... ...... +. .-+.....+.+.. ..++++...+ +.|.+||.... +
T Consensus 15 ~~~~l~~~d~~t~~~~~~--------i~~~~n--~~-~lg~~~~~i~~~~--~~lyv~~~~~-~~v~viD~~t~-----~ 75 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENE--------VFYRAN--GF-KLGDVAQSMVIRD--GIGWIVVNNS-HVIFAIDINTF-----K 75 (328)
T ss_dssp CCBEEEEEETTTTEEECS--------HHHHHH--SS-CCBSCEEEEEEET--TEEEEEEGGG-TEEEEEETTTC-----C
T ss_pred CCceEEEEECCCCEEhhh--------hHhhhc--Cc-ccCccceEEEEEC--CEEEEEEcCC-CEEEEEECccc-----E
Confidence 488999999998654431 100000 00 0001145577753 3466666655 99999999433 2
Q ss_pred eeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC-----CceeEEEEeecCCE
Q 037120 196 VLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH-----GTLNSIQLHAENQI 270 (489)
Q Consensus 196 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~-----~~v~~~~~~p~~~~ 270 (489)
.+.... .......+++++++. ++++...++.|.+||..+++ ....+.... .....+++ ++..
T Consensus 76 ~~~~i~--------~~~~p~~i~~~~~g~-lyv~~~~~~~v~~iD~~t~~--~~~~i~~g~~~~~~~~p~~i~~--~~~~ 142 (328)
T 3dsm_A 76 EVGRIT--------GFTSPRYIHFLSDEK-AYVTQIWDYRIFIINPKTYE--ITGYIECPDMDMESGSTEQMVQ--YGKY 142 (328)
T ss_dssp EEEEEE--------CCSSEEEEEEEETTE-EEEEEBSCSEEEEEETTTTE--EEEEEECTTCCTTTCBCCCEEE--ETTE
T ss_pred EEEEcC--------CCCCCcEEEEeCCCe-EEEEECCCCeEEEEECCCCe--EEEEEEcCCccccCCCcceEEE--ECCE
Confidence 222111 124678899988885 66666589999999999875 332222111 14556777 4555
Q ss_pred EEEEe--CCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEe
Q 037120 271 IFAAG--KHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHL 348 (489)
Q Consensus 271 l~~~~--~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~ 348 (489)
++++. .++.|.+||+.+++.+..+... .. ...+.++++|+.+........... +..+...+..
T Consensus 143 lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~----p~~i~~~~dG~l~v~~~~~~~~~~-------~~~~~~~v~~--- 207 (328)
T 3dsm_A 143 VYVNCWSYQNRILKIDTETDKVVDELTIG-IQ----PTSLVMDKYNKMWTITDGGYEGSP-------YGYEAPSLYR--- 207 (328)
T ss_dssp EEEEECTTCCEEEEEETTTTEEEEEEECS-SC----BCCCEECTTSEEEEEBCCBCTTCS-------SCBCCCEEEE---
T ss_pred EEEEcCCCCCEEEEEECCCCeEEEEEEcC-CC----ccceEEcCCCCEEEEECCCccCCc-------cccCCceEEE---
Confidence 55554 4899999999998877666542 22 456777777765543111000000 0000111111
Q ss_pred cCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcc
Q 037120 349 DDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNED 428 (489)
Q Consensus 349 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~ 428 (489)
++..++.+......+. . .....+++.|++..+.++.+ .|++||..++ +.
T Consensus 208 -------id~~t~~v~~~~~~~~----g-------~~p~~la~~~d~~~lyv~~~---~v~~~d~~t~----------~~ 256 (328)
T 3dsm_A 208 -------IDAETFTVEKQFKFKL----G-------DWPSEVQLNGTRDTLYWINN---DIWRMPVEAD----------RV 256 (328)
T ss_dssp -------EETTTTEEEEEEECCT----T-------CCCEEEEECTTSCEEEEESS---SEEEEETTCS----------SC
T ss_pred -------EECCCCeEEEEEecCC----C-------CCceeEEEecCCCEEEEEcc---EEEEEECCCC----------ce
Confidence 1111111111110000 0 01234667777777666533 8999999877 33
Q ss_pred cchhhHhhhhcccCCccc-CCCceEEEEeeC-CCCeEEec----cCcceeEEEecccccc
Q 037120 429 IESLSERTKLKKENRFVP-LSEGVTACVTHP-LNNTIVAG----TKNSSLLVVSQKQQCT 482 (489)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~-h~~~V~~va~~p-~~~~i~sg----s~dg~i~v~~~~~~~~ 482 (489)
... . ++. ......+++++| .+..+++. ..++.|.+|..+.+-+
T Consensus 257 ~~~-~----------~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~g~~~ 305 (328)
T 3dsm_A 257 PVR-P----------FLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQGKLI 305 (328)
T ss_dssp CSS-C----------SBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTTCCEE
T ss_pred eee-e----------eecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCCCCEE
Confidence 211 0 001 245688999999 55677776 7899999998775544
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.25 E-value=8.8e-10 Score=104.98 Aligned_cols=90 Identities=7% Similarity=0.161 Sum_probs=70.1
Q ss_pred EEEecCCCcEEEEEe----------CCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcC
Q 037120 217 LAFSAVNTSRLIASD----------THGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLR 286 (489)
Q Consensus 217 ~~~~~~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~ 286 (489)
++|+|++...+++.. .++.|.+||+.+.+ .+..+..+. +.+++|+|+|++|++++. +.|.+||..
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~--~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~ 333 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQ--RVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDIS 333 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTE--EEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECS
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCc--EEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECC
Confidence 789999883444433 13589999999876 566665555 899999999999998886 999999999
Q ss_pred CC--cccceeecCCccCCCCeeEEEeCCCCc
Q 037120 287 GG--RTSAPFHNHKEVCHLPLTSLKLASMLE 315 (489)
Q Consensus 287 ~~--~~~~~~~~~~~~~~~~v~~l~~~~~~~ 315 (489)
++ +.+..+...... ...+.++|+|.
T Consensus 334 t~~l~~~~~i~~~G~~----P~~~~~~p~G~ 360 (361)
T 2oiz_A 334 QPEPKLLRTIEGAAEA----SLQVQFHPVGG 360 (361)
T ss_dssp SSSCEEEEEETTSCSS----EEEEEECCCSC
T ss_pred CCcceeeEEeccCCCC----cEEEEecCCCC
Confidence 99 878777544444 77888888875
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.6e-10 Score=104.72 Aligned_cols=129 Identities=9% Similarity=0.087 Sum_probs=87.0
Q ss_pred eeEEEeeCCCCCEEEEEe--------cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEE
Q 037120 158 LDAVRWNLANQDEVACAS--------TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIA 229 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~--------~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 229 (489)
+..+++ ++..++++.. .+ +.|.+||+..+ .. ..+ ..+..++|+|+|+ .|+.
T Consensus 17 ~~~~~~--dG~~i~~~~~~~~~~~~~~~-~~l~~~d~~~~--~~-~~l--------------~~~~~~~~SpDg~-~la~ 75 (347)
T 2gop_A 17 LSDPRT--KGELVAYVLTKANLKDNKYE-NTIVIENLKNN--AR-RFI--------------ENATMPRISPDGK-KIAF 75 (347)
T ss_dssp EEEEEE--ETTEEEEEEEEEETTTTEEE-EEEEEEETTTC--CE-EEE--------------ESCEEEEECTTSS-EEEE
T ss_pred cccceE--CCcEEEEEEeecCcccCCcc-ceEEEEeCCCC--ce-EEc--------------ccCCCeEECCCCC-EEEE
Confidence 677788 7765555432 13 68899998432 11 111 2678899999999 7776
Q ss_pred EeCC---C--cEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCC---------------------------
Q 037120 230 SDTH---G--VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKH--------------------------- 277 (489)
Q Consensus 230 ~s~d---g--~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~d--------------------------- 277 (489)
++.+ + .|.+||+.+++ ...... +.. +..++|+|+|+.|+.++.+
T Consensus 76 ~~~~~~~~~~~l~~~~~~~g~--~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 151 (347)
T 2gop_A 76 MRANEEKKVSEIWVADLETLS--SKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEK 151 (347)
T ss_dssp EEEETTTTEEEEEEEETTTTE--EEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CE
T ss_pred EEeccCCCcceEEEEECCCCc--eEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCcc
Confidence 6643 3 48888888765 232222 233 8999999999988888642
Q ss_pred CeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCccee
Q 037120 278 GSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 278 g~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
..|++||+.+++.+..+.. . . +..+.|+|+| .+.
T Consensus 152 ~~l~~~d~~~~~~~~~l~~-~-~----~~~~~~spdg-~~~ 185 (347)
T 2gop_A 152 TTFWIFDTESEEVIEEFEK-P-R----FSSGIWHRDK-IVV 185 (347)
T ss_dssp EEEEEEETTTTEEEEEEEE-E-T----TCEEEEETTE-EEE
T ss_pred ceEEEEECCCCeEEeeecC-C-C----cccccCCCCe-EEE
Confidence 5799999988775344544 2 4 7888899988 443
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=2.1e-09 Score=98.72 Aligned_cols=183 Identities=9% Similarity=0.058 Sum_probs=118.4
Q ss_pred CceeEEEE-CCCCcEEEEEec-CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 97 PGISALDF-DCKGIYLVSATR-SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 97 ~~V~~~~f-s~~g~~la~g~~-dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
..+.++++ +++|.++++... ++.|.+||... ..... .. ..+... +.++++++++. ++++.
T Consensus 77 ~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g-~~~~~--------~~-----~~~~~~---~~~i~~~~~g~-l~v~~ 138 (286)
T 1q7f_A 77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG-QFVRK--------FG-----ATILQH---PRGVTVDNKGR-IIVVE 138 (286)
T ss_dssp SSEEEEEEETTTTEEEEEECGGGCEEEEECTTS-CEEEE--------EC-----TTTCSC---EEEEEECTTSC-EEEEE
T ss_pred cCceEEEEEcCCCeEEEEcCCCCCEEEEECCCC-cEEEE--------ec-----CccCCC---ceEEEEeCCCC-EEEEE
Confidence 35889999 578887777754 88999999543 22110 00 011122 78899999985 77776
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc-
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST- 253 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~- 253 (489)
..+ +.|.+||... ..+.... ..++...+..+++.+++. ++++...++.|++||... + .+..+.
T Consensus 139 ~~~-~~i~~~~~~g------~~~~~~~-----~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~g-~--~~~~~~~ 202 (286)
T 1q7f_A 139 CKV-MRVIIFDQNG------NVLHKFG-----CSKHLEFPNGVVVNDKQE-IFISDNRAHCVKVFNYEG-Q--YLRQIGG 202 (286)
T ss_dssp TTT-TEEEEECTTS------CEEEEEE-----CTTTCSSEEEEEECSSSE-EEEEEGGGTEEEEEETTC-C--EEEEESC
T ss_pred CCC-CEEEEEcCCC------CEEEEeC-----CCCccCCcEEEEECCCCC-EEEEECCCCEEEEEcCCC-C--EEEEEcc
Confidence 656 8999999621 1111111 123445789999999988 888878899999999753 3 233332
Q ss_pred -CCCCceeEEEEeecCCEEEEEeCCC-eEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcc
Q 037120 254 -GSHGTLNSIQLHAENQIIFAAGKHG-SIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEK 316 (489)
Q Consensus 254 -~h~~~v~~~~~~p~~~~l~~~~~dg-~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~ 316 (489)
++...+..++++|+|+++++...++ .|++||. +++.+..+..+... ..+.+++++|+|..
T Consensus 203 ~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~--~~~~~i~~~~~g~l 264 (286)
T 1q7f_A 203 EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKH--AQCFDVALMDDGSV 264 (286)
T ss_dssp TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCC--SCEEEEEEETTTEE
T ss_pred CCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCC--CcceeEEECCCCcE
Confidence 2235788999999998877777776 9999995 45555555433211 11445555555543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.21 E-value=3e-09 Score=100.01 Aligned_cols=187 Identities=13% Similarity=0.093 Sum_probs=119.3
Q ss_pred CCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
....+.+++|+++|++++++..++.|.+||..+.+.... . ..+... +.+++|++++. ++++.
T Consensus 43 ~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~--------~------~~~~~~---~~~i~~~~dg~-l~v~~ 104 (333)
T 2dg1_A 43 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP--------F------VSHKAN---PAAIKIHKDGR-LFVCY 104 (333)
T ss_dssp SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE--------E------ECSSSS---EEEEEECTTSC-EEEEE
T ss_pred cCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE--------e------eCCCCC---cceEEECCCCc-EEEEe
Confidence 344578999999999888899999999999887433220 0 011122 88999999985 65555
Q ss_pred ecC---CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeC------CCcEEEEECCCCC
Q 037120 175 STR---SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT------HGVVNIWDRRVGV 245 (489)
Q Consensus 175 ~~d---~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~------dg~i~iwd~~~~~ 245 (489)
..+ .+.|.+||....... ..+. ...+...++++++.|++. ++++... .+.|..+|..+++
T Consensus 105 ~~~~~~~~~i~~~d~~~~~~~--~~~~--------~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~ 173 (333)
T 2dg1_A 105 LGDFKSTGGIFAATENGDNLQ--DIIE--------DLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRT 173 (333)
T ss_dssp CTTSSSCCEEEEECTTSCSCE--EEEC--------SSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCC
T ss_pred CCCCCCCceEEEEeCCCCEEE--EEEc--------cCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCE
Confidence 421 048999998432110 0111 012345789999999998 7666553 3566667765543
Q ss_pred cCceeeccCCCCceeEEEEeecCCEEEEEe-CCCeEEEEEcCC-Cccccee--------ecCCccCCCCeeEEEeCCCCc
Q 037120 246 LPSLELSTGSHGTLNSIQLHAENQIIFAAG-KHGSIYLWDLRG-GRTSAPF--------HNHKEVCHLPLTSLKLASMLE 315 (489)
Q Consensus 246 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~-~dg~i~lwd~~~-~~~~~~~--------~~~~~~~~~~v~~l~~~~~~~ 315 (489)
.. .+..+...+..++|+|+++.++.+. .++.|++||+.+ +..+..+ .++ .. +..++++++|.
T Consensus 174 --~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~----~~~i~~d~~G~ 245 (333)
T 2dg1_A 174 --VT-PIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EG----PDSCCIDSDDN 245 (333)
T ss_dssp --EE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SE----EEEEEEBTTCC
T ss_pred --EE-EeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CC----CCceEECCCCC
Confidence 22 2222234578999999999766654 488999999974 3333221 111 23 77899999887
Q ss_pred cee
Q 037120 316 KIG 318 (489)
Q Consensus 316 ~i~ 318 (489)
.+.
T Consensus 246 l~v 248 (333)
T 2dg1_A 246 LYV 248 (333)
T ss_dssp EEE
T ss_pred EEE
Confidence 653
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=8.7e-10 Score=115.10 Aligned_cols=202 Identities=9% Similarity=0.003 Sum_probs=118.9
Q ss_pred CCcccCeeEEEEecCCCcEEEEEeCC-C----cEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCe---
Q 037120 208 SDVQKGLSDLAFSAVNTSRLIASDTH-G----VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGS--- 279 (489)
Q Consensus 208 ~~h~~~v~~~~~~~~~~~~l~s~s~d-g----~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~--- 279 (489)
.+|...+..++|+|||+ +|+.++.+ | .|++||+.+++ ....... ...+..++|+|||+.|+.++.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~-~la~~~~~~G~~~~~i~v~d~~tg~--~~~~~~~-~~~~~~~~wspDg~~l~~~~~~~~~~~ 196 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGE-YFAYGLSASGSDWVTIKFMKVDGAK--ELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGK 196 (710)
T ss_dssp TTSCEEEEEEEECTTSS-EEEEEEEETTCSCEEEEEEETTTTE--EEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSC
T ss_pred cCCCEEEEEEEECCCCC-EEEEEEcCCCCceEEEEEEECCCCC--CCccccc-CcccceEEEEeCCCEEEEEEECCcccc
Confidence 34555788999999999 77665533 3 89999999876 3322211 223678999999999999988665
Q ss_pred -------------EEEEEcCCCccc--ceeec--CCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCe
Q 037120 280 -------------IYLWDLRGGRTS--APFHN--HKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSY 342 (489)
Q Consensus 280 -------------i~lwd~~~~~~~--~~~~~--~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~ 342 (489)
|++|++.+++.. ..+.. +... +..+.|+|||+.+.......... ...
T Consensus 197 ~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~----~~~~~~SpDg~~l~~~~~~~~~~------------~~~ 260 (710)
T 2xdw_A 197 SDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKW----MGGAELSDDGRYVLLSIREGCDP------------VNR 260 (710)
T ss_dssp CSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTC----EEEEEECTTSCEEEEEEECSSSS------------CCE
T ss_pred ccccccccCCCCEEEEEECCCCcccceEEeccCCCCeE----EEEEEEcCCCCEEEEEEEccCCC------------ccE
Confidence 999999887632 11222 2223 56777777776654311100000 011
Q ss_pred EEEEEecCCceEEEEeec------c--ceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCC---CcEEEE
Q 037120 343 QLAFHLDDGWSGVLDVYN------S--RVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSD---HGIHLL 411 (489)
Q Consensus 343 ~~~~~~~~~w~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d---~~i~vw 411 (489)
+ .+++... + ....+.. ... .....|.++|+.+++.+..+ ..|++|
T Consensus 261 l----------~~~d~~~~~~~~~~~~~~~~l~~---~~~-----------~~~~~~s~dg~~l~~~s~~~~~~~~l~~~ 316 (710)
T 2xdw_A 261 L----------WYCDLQQESNGITGILKWVKLID---NFE-----------GEYDYVTNEGTVFTFKTNRHSPNYRLINI 316 (710)
T ss_dssp E----------EEEEGGGSSSSSCSSCCCEEEEC---SSS-----------SCEEEEEEETTEEEEEECTTCTTCEEEEE
T ss_pred E----------EEEECcccccccCCccceEEeeC---CCC-----------cEEEEEeccCCEEEEEECCCCCCCEEEEE
Confidence 1 1122211 1 0111100 000 01124677777777765544 379999
Q ss_pred eccCCCCCCeeeccCcc--cchhhHhhhhcccCCcccCCC--ceEEEEeeCCCCeEEeccCcceeEEE
Q 037120 412 DFFPGSSSPSHVDYNED--IESLSERTKLKKENRFVPLSE--GVTACVTHPLNNTIVAGTKNSSLLVV 475 (489)
Q Consensus 412 d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~h~~--~V~~va~~p~~~~i~sgs~dg~i~v~ 475 (489)
|+.++ .. ...+. +|.. .|.+++|++.+..+++...||...||
T Consensus 317 d~~~~----------~~~~~~~l~------------~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~ 362 (710)
T 2xdw_A 317 DFTDP----------EESKWKVLV------------PEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQ 362 (710)
T ss_dssp ETTSC----------CGGGCEEEE------------CCCSSCEEEEEEEETTTEEEEEEEETTEEEEE
T ss_pred eCCCC----------Ccccceecc------------CCCCCCeEEEEEEEcCCEEEEEEEECCEEEEE
Confidence 98766 21 22222 4443 68889999888888999889865554
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.20 E-value=4e-09 Score=96.23 Aligned_cols=153 Identities=8% Similarity=-0.031 Sum_probs=102.5
Q ss_pred CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEe
Q 037120 107 KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDI 186 (489)
Q Consensus 107 ~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~ 186 (489)
.+++|++++.|+.|.+||.++++..-. +. .+. ...+.++.+.|++. ++++ . + +.|..||.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~--------~~------~~~--~~~~~~~~~~pdG~-ilvs-~-~-~~V~~~d~ 63 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWE--------YP------LEK--GWECNSVAATKAGE-ILFS-Y-S-KGAKMITR 63 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEE--------EE------CCT--TCCCCEEEECTTSC-EEEE-C-B-SEEEEECT
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEE--------eC------CCc--cCCCcCeEECCCCC-EEEe-C-C-CCEEEECC
Confidence 467899999999999999977555432 11 111 01267799999985 6663 3 3 78999987
Q ss_pred ccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeC-CCcEEEEECCCCCcCceeecc------CCCCce
Q 037120 187 GYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT-HGVVNIWDRRVGVLPSLELST------GSHGTL 259 (489)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~------~h~~~v 259 (489)
.+ +.+-... .+....+.++.+.++|+ ++++.+. ++.|..+|. .++ .+..+. .+....
T Consensus 64 -~G-----~~~W~~~------~~~~~~~~~~~~~~dG~-~lv~~~~~~~~v~~vd~-~Gk--~l~~~~~~~~~~~~~~~~ 127 (276)
T 3no2_A 64 -DG-----RELWNIA------APAGCEMQTARILPDGN-ALVAWCGHPSTILEVNM-KGE--VLSKTEFETGIERPHAQF 127 (276)
T ss_dssp -TS-----CEEEEEE------CCTTCEEEEEEECTTSC-EEEEEESTTEEEEEECT-TSC--EEEEEEECCSCSSGGGSC
T ss_pred -CC-----CEEEEEc------CCCCccccccEECCCCC-EEEEecCCCCEEEEEeC-CCC--EEEEEeccCCCCcccccc
Confidence 22 2221111 11224678899999999 8888776 777877875 444 221211 122345
Q ss_pred eEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeec
Q 037120 260 NSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 260 ~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
..+++.++|+++++...++.|..||.. |+.+..+..
T Consensus 128 ~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~ 163 (276)
T 3no2_A 128 RQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL 163 (276)
T ss_dssp SCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC
T ss_pred cCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC
Confidence 567789999999998889999999987 877666554
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-09 Score=113.27 Aligned_cols=104 Identities=11% Similarity=0.060 Sum_probs=71.8
Q ss_pred CCcccCeeEEEEecCCCcEEE-----EEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCe---
Q 037120 208 SDVQKGLSDLAFSAVNTSRLI-----ASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGS--- 279 (489)
Q Consensus 208 ~~h~~~v~~~~~~~~~~~~l~-----s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~--- 279 (489)
.+|...+.+++|+|||+ +|+ .|+.+..|++||+.+++........ ......++|+|||+.|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~-~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~~~~~~~~wspDg~~l~~~~~d~~~~~ 193 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGK-KVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIE--GGKYATPKWTPDSKGFYYEWLPTDPSI 193 (695)
T ss_dssp SSSCEEEEEEEECTTSS-EEEEEEEETTCSCCEEEEEETTTCCBCSSCCBS--CCTTCCCEECTTSSEEEEEECCCCTTS
T ss_pred cCCCEEEEEEEECCCCC-EEEEEECCCCCceEEEEEEECCCCCCcCCcccC--cccccceEEecCCCEEEEEEecCCCCC
Confidence 45666899999999999 666 3334568999999987622010111 111268999999999999988766
Q ss_pred ----------EEEEEcCCCcc----cceeecCCccCCCCeeEEEeCCCCccee
Q 037120 280 ----------IYLWDLRGGRT----SAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 280 ----------i~lwd~~~~~~----~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
|++|++.++.. +.....+... +.++.|+|||+.++
T Consensus 194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~----~~~~~~SpDG~~l~ 242 (695)
T 2bkl_A 194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTT----FLQSDLSRDGKYLF 242 (695)
T ss_dssp CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTC----EEEEEECTTSCCEE
T ss_pred ccccCCCCCEEEEEECCCCchhceEEEecCCCCEE----EEEEEECCCCCEEE
Confidence 99999998763 2222233334 77788888887664
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-07 Score=85.98 Aligned_cols=183 Identities=7% Similarity=-0.066 Sum_probs=118.4
Q ss_pred CCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 96 KPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
...+.+++++++|+++++...++.|.+||.. ....... . ..+... +.++++.+++. ++++..
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~-------~------~~~~~~---~~~i~~~~~g~-l~v~~~ 80 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFE-------V------PTPDAK---VMCLIVSSLGD-IWFTEN 80 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEE-------C------SSTTCC---EEEEEECTTSC-EEEEET
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEE-------C------CCCCCc---ceeEEECCCCC-EEEEec
Confidence 4568899999999988887788999999987 2222100 0 001112 78899998875 666655
Q ss_pred cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCC
Q 037120 176 TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGS 255 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h 255 (489)
.+ +.|..||.. + .. . .+ ........+.++++.+++. ++++...++.|..||.. ++.... .....
T Consensus 81 ~~-~~v~~~d~~-g-----~~-~---~~--~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~-~~~~~ 144 (300)
T 2qc5_A 81 GA-NKIGKLSKK-G-----GF-T---EY--PLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEY-DLPNK 144 (300)
T ss_dssp TT-TEEEEECTT-S-----CE-E---EE--ECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEE-ECSST
T ss_pred CC-CeEEEECCC-C-----Ce-E---Ee--cCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEc-cCCCC
Confidence 45 899999873 1 11 1 01 0122335788999999888 77777778899999987 542211 12223
Q ss_pred CCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceee--cCCccCCCCeeEEEeCCCCccee
Q 037120 256 HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH--NHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
...+..+++++++++.++...++.|..||. +++.. .+. ..... +..++++++|....
T Consensus 145 ~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~----~~~i~~d~~g~l~v 203 (300)
T 2qc5_A 145 GSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLE-EYPLPTNAAA----PVGITSGNDGALWF 203 (300)
T ss_dssp TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EEECSSTTCC----EEEEEECTTSSEEE
T ss_pred CCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEE-EeeCCCCCCC----cceEEECCCCCEEE
Confidence 456889999999996666555889999998 54432 222 12222 66777777765443
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-08 Score=95.95 Aligned_cols=183 Identities=8% Similarity=-0.043 Sum_probs=112.5
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
...+.++ ++.++++...++.|.+||..+.+.... + + .... ...+++++++ .++++...+
T Consensus 46 ~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~--------i-~------~~~~---p~~i~~~~~g-~lyv~~~~~- 104 (328)
T 3dsm_A 46 AQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR--------I-T------GFTS---PRYIHFLSDE-KAYVTQIWD- 104 (328)
T ss_dssp EEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE--------E-E------CCSS---EEEEEEEETT-EEEEEEBSC-
T ss_pred ceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE--------c-C------CCCC---CcEEEEeCCC-eEEEEECCC-
Confidence 5667774 456666677789999999998554331 1 0 1112 6779998887 466666455
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCcCceeeccCCCC
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THGVVNIWDRRVGVLPSLELSTGSHG 257 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~h~~ 257 (489)
+.|.+||.... ........- ...++......+++ .++. ++++.. .++.|.++|..+++ ....+.. ..
T Consensus 105 ~~v~~iD~~t~-----~~~~~i~~g--~~~~~~~~p~~i~~-~~~~-lyv~~~~~~~~v~viD~~t~~--~~~~i~~-g~ 172 (328)
T 3dsm_A 105 YRIFIINPKTY-----EITGYIECP--DMDMESGSTEQMVQ-YGKY-VYVNCWSYQNRILKIDTETDK--VVDELTI-GI 172 (328)
T ss_dssp SEEEEEETTTT-----EEEEEEECT--TCCTTTCBCCCEEE-ETTE-EEEEECTTCCEEEEEETTTTE--EEEEEEC-SS
T ss_pred CeEEEEECCCC-----eEEEEEEcC--CccccCCCcceEEE-ECCE-EEEEcCCCCCEEEEEECCCCe--EEEEEEc-CC
Confidence 99999998432 222211100 00111224556777 3333 455443 48999999999876 3333322 23
Q ss_pred ceeEEEEeecCCEEEEEeCC----------CeEEEEEcCCCcccceeecCC-ccCCCCeeEEEeCCCCccee
Q 037120 258 TLNSIQLHAENQIIFAAGKH----------GSIYLWDLRGGRTSAPFHNHK-EVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 258 ~v~~~~~~p~~~~l~~~~~d----------g~i~lwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~i~ 318 (489)
....++++|+|++++++..+ +.|.+||..+++....+.... .. ...++|+|+++.+.
T Consensus 173 ~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~----p~~la~~~d~~~ly 240 (328)
T 3dsm_A 173 QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDW----PSEVQLNGTRDTLY 240 (328)
T ss_dssp CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCC----CEEEEECTTSCEEE
T ss_pred CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCC----ceeEEEecCCCEEE
Confidence 45688999999876666544 799999999887665554221 12 56777777665543
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.7e-09 Score=96.94 Aligned_cols=138 Identities=8% Similarity=-0.014 Sum_probs=89.5
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
..+++|+|++..+++++..+ +.|..||.... . ..+ ..+...+.++++++++. ++++...++.|.
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~-~~i~~~~~~~~-------~---~~~----~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~ 93 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQ-NRTWAWSDDGQ-------L---SPE----MHPSHHQNGHCLNKQGH-LIACSHGLRRLE 93 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGG-TEEEEEETTSC-------E---EEE----ESSCSSEEEEEECTTCC-EEEEETTTTEEE
T ss_pred ccCCeEeCCCCEEEEEeCCC-CEEEEEECCCC-------e---EEE----ECCCCCcceeeECCCCc-EEEEecCCCeEE
Confidence 67799999986678888777 99999998321 1 111 23456789999999998 777777778999
Q ss_pred EEECCCCCcCceee-cc-CCCCceeEEEEeecCCEEEEEeC-----------------CCeEEEEEcCCCcccceeecCC
Q 037120 238 IWDRRVGVLPSLEL-ST-GSHGTLNSIQLHAENQIIFAAGK-----------------HGSIYLWDLRGGRTSAPFHNHK 298 (489)
Q Consensus 238 iwd~~~~~~~~~~~-~~-~h~~~v~~~~~~p~~~~l~~~~~-----------------dg~i~lwd~~~~~~~~~~~~~~ 298 (489)
+||..+++...+.. .. .....++.++++|+|+++++.+. .+.|..+|.. ++ +..+..+.
T Consensus 94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~ 171 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDR 171 (296)
T ss_dssp EECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCC
T ss_pred EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCC
Confidence 99998776221110 01 11234678999999998776321 2455555554 33 33333333
Q ss_pred ccCCCCeeEEEeCCCCcce
Q 037120 299 EVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 299 ~~~~~~v~~l~~~~~~~~i 317 (489)
.. ...++|+|+++.+
T Consensus 172 ~~----~~gi~~s~dg~~l 186 (296)
T 3e5z_A 172 VK----PNGLAFLPSGNLL 186 (296)
T ss_dssp SS----EEEEEECTTSCEE
T ss_pred CC----CccEEECCCCCEE
Confidence 33 5667777776654
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.5e-08 Score=94.65 Aligned_cols=162 Identities=10% Similarity=0.024 Sum_probs=100.6
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
.....|+|+++|+++++...++.|++||..+...... ... .. ... ++|++++. .|+.+..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~---------~~~-------~~--~~~-ia~~~~g~-~l~~~d~ 190 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTV---------HPG-------FK--GGK-PAVTKDKQ-RVYSIGW 190 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEE---------EET-------CC--BCB-CEECTTSS-EEEEEBS
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEe---------ecc-------CC--CCc-eeEecCCC-cEEEEec
Confidence 3578999999999888888889999999987433321 000 11 033 89999986 5555554
Q ss_pred CCC-EEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee--cc
Q 037120 177 RSN-VVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL--ST 253 (489)
Q Consensus 177 d~g-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~ 253 (489)
+.+ .|.+||...... ...+.. . .......+.+++++|++. .|+.+..++.|+.||..++....+.. ..
T Consensus 191 ~~~~~I~~~d~~~~~~--~~~~g~---~---~~~~~~~p~~iav~p~~g-~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~ 261 (409)
T 3hrp_A 191 EGTHTVYVYMKASGWA--PTRIGQ---L---GSTFSGKIGAVALDETEE-WLYFVDSNKNFGRFNVKTQEVTLIKQLELS 261 (409)
T ss_dssp STTCEEEEEEGGGTTC--EEEEEE---C---CTTSCSCCCBCEECTTSS-EEEEECTTCEEEEEETTTCCEEEEEECCCC
T ss_pred CCCceEEEEEcCCCce--eEEeee---c---cchhcCCcEEEEEeCCCC-eEEEEECCCcEEEEECCCCCEEEEeccccc
Confidence 413 888888743211 011100 0 011335678899999655 45557778899999998765221100 11
Q ss_pred CCCCce--eEEEEeecCCEEEEE-eCCCeEEEEEcCC
Q 037120 254 GSHGTL--NSIQLHAENQIIFAA-GKHGSIYLWDLRG 287 (489)
Q Consensus 254 ~h~~~v--~~~~~~p~~~~l~~~-~~dg~i~lwd~~~ 287 (489)
++...- +.++|+|++..|+.+ ..++.|+.||...
T Consensus 262 g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g 298 (409)
T 3hrp_A 262 GSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDG 298 (409)
T ss_dssp SCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTC
T ss_pred CCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCC
Confidence 222222 389999965555555 4488999998764
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.12 E-value=7.4e-09 Score=98.14 Aligned_cols=115 Identities=11% Similarity=0.117 Sum_probs=79.6
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCC----CCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYIS----DEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH 233 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d 233 (489)
+..+++++... ++++|+.+ .+.+|++.... ... ..+.+... ..+.. |+.++| ++. .|+.+ .+
T Consensus 40 ~nlLais~~~g-ll~a~~~~--~l~v~~~~~l~~~~~~~~-~~~~~~~~-----~~lp~-V~~l~f--d~~-~L~v~-~~ 105 (388)
T 1xip_A 40 LQNLDISNSKS-LFVAASGS--KAVVGELQLLRDHITSDS-TPLTFKWE-----KEIPD-VIFVCF--HGD-QVLVS-TR 105 (388)
T ss_dssp CBCEEEETTTT-EEEEEETT--EEEEEEHHHHHHHHHSSS-CCCCCSEE-----EECTT-EEEEEE--ETT-EEEEE-ES
T ss_pred ccEEEEcCCCC-EEEEeCCC--EEEEEEhhHhhhhhcccc-ccccceEE-----eeCCC-eeEEEE--CCC-EEEEE-cC
Confidence 77799999875 78888844 77789984221 000 00111111 23455 999999 777 78877 88
Q ss_pred CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc
Q 037120 234 GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT 290 (489)
Q Consensus 234 g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~ 290 (489)
+.|++||+++.. .......|+..+.++.+.+. .+++++.||.|.+||+.++..
T Consensus 106 ~~l~v~dv~sl~--~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~ 158 (388)
T 1xip_A 106 NALYSLDLEELS--EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKST 158 (388)
T ss_dssp SEEEEEESSSTT--CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCE
T ss_pred CcEEEEEchhhh--ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcc
Confidence 999999998765 23334466777887776554 388888999999999997654
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-08 Score=92.22 Aligned_cols=158 Identities=8% Similarity=-0.035 Sum_probs=106.8
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..+.+++++++|+++++.. ++.|.+||.......... ..... .+..+++.+++. ++++...
T Consensus 67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~--------------~~~~~---~p~~i~~~~~g~-l~v~~~~ 127 (270)
T 1rwi_B 67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLP--------------FDGLN---YPEGLAVDTQGA-VYVADRG 127 (270)
T ss_dssp CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECC--------------CCSCS---SEEEEEECTTCC-EEEEEGG
T ss_pred CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeee--------------cCCcC---CCcceEECCCCC-EEEEECC
Confidence 3578899999999777666 889999998763222100 00111 277899999875 7776665
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~ 256 (489)
+ +.|.+|+.... . .... .......+.++++.+++. ++++...++.|.+||..... .......+.
T Consensus 128 ~-~~i~~~~~~~~--~--~~~~--------~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~--~~~~~~~~~ 191 (270)
T 1rwi_B 128 N-NRVVKLAAGSK--T--QTVL--------PFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNN--QVVLPFTDI 191 (270)
T ss_dssp G-TEEEEECTTCC--S--CEEC--------CCCSCCSCCCEEECTTCC-EEEEEGGGTEEEEECTTTCC--EEECCCSSC
T ss_pred C-CEEEEEECCCc--e--eEee--------ccccCCCceeEEEeCCCC-EEEEECCCCEEEEEecCCCc--eEeecccCC
Confidence 5 89999975221 1 1100 012233678899999998 88877778999999987654 222222333
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCc
Q 037120 257 GTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGR 289 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~ 289 (489)
..+..++++++|.+.++...++.|.+||.....
T Consensus 192 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~ 224 (270)
T 1rwi_B 192 TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT 224 (270)
T ss_dssp CSEEEEEECTTCCEEEEETTTSCEEEECTTCSC
T ss_pred CCceEEEECCCCCEEEEECCCCcEEEEcCCCCc
Confidence 668899999999766666668899999987543
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.08 E-value=3.9e-08 Score=90.80 Aligned_cols=154 Identities=10% Similarity=-0.038 Sum_probs=93.7
Q ss_pred eeEEEECCC-CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 99 ISALDFDCK-GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 99 V~~~~fs~~-g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
--+..|+++ +.++++...++.|..||..+...... ..... +.++++++++. ++++ . +
T Consensus 15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~----------------~~~~~---~~~i~~~~dG~-l~v~-~-~ 72 (297)
T 3g4e_A 15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV----------------TMDAP---VSSVALRQSGG-YVAT-I-G 72 (297)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE----------------ECSSC---EEEEEEBTTSS-EEEE-E-T
T ss_pred ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE----------------eCCCc---eEEEEECCCCC-EEEE-E-C
Confidence 457789985 56677777789999999987332110 01112 88899999986 5554 3 3
Q ss_pred CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC---------CcEEEEECCCCCcCc
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH---------GVVNIWDRRVGVLPS 248 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d---------g~i~iwd~~~~~~~~ 248 (489)
+.|.+||...+.. ..+.... .......++++++.|+|. ++++...+ ..-.||.+..... .
T Consensus 73 -~~l~~~d~~~g~~---~~~~~~~-----~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~-~ 141 (297)
T 3g4e_A 73 -TKFCALNWKEQSA---VVLATVD-----NDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDHH-V 141 (297)
T ss_dssp -TEEEEEETTTTEE---EEEEECC-----TTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTSC-E
T ss_pred -CeEEEEECCCCcE---EEEEecC-----CCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCCC-E
Confidence 6899999843210 1111100 011234588999999998 66654321 2334554443221 1
Q ss_pred eeeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcC
Q 037120 249 LELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLR 286 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~ 286 (489)
. ....+....+.++|+|+++.++.+.. ++.|.+||+.
T Consensus 142 ~-~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d 179 (297)
T 3g4e_A 142 K-KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYD 179 (297)
T ss_dssp E-EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEEC
T ss_pred E-EEeeccccccceEEcCCCCEEEEecCCCCcEEEEecc
Confidence 1 22223345678999999998766654 8899999974
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-08 Score=105.28 Aligned_cols=164 Identities=12% Similarity=0.099 Sum_probs=101.3
Q ss_pred ceeEEEECCCCcEEEEEe-----cCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 98 GISALDFDCKGIYLVSAT-----RSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~-----~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
.+..++|||||++||-+. ....|+|||+.+++.... .... .. ...++|+ |++.+++
T Consensus 130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-----------~~~~----~k---~~~~~Ws-Dg~~l~y 190 (693)
T 3iuj_A 130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-----------PLKD----VK---FSGISWL-GNEGFFY 190 (693)
T ss_dssp EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-----------EEEE----EE---SCCCEEE-TTTEEEE
T ss_pred EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-----------ccCC----ce---eccEEEe-CCCEEEE
Confidence 488999999999998543 335799999998543321 0111 00 1348999 9876665
Q ss_pred EEecC-----------CCEEEEEEeccCCCCCceeeeeceeeeeecCC-cccCeeEEEEecCCCcEEEEEeC---CCcEE
Q 037120 173 CASTR-----------SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSD-VQKGLSDLAFSAVNTSRLIASDT---HGVVN 237 (489)
Q Consensus 173 s~~~d-----------~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~s~---dg~i~ 237 (489)
+...+ ...|++|++......... +..... |...+.++.|+|+++.++++.+. +..|+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~--------v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~ 262 (693)
T 3iuj_A 191 SSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRL--------VFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLY 262 (693)
T ss_dssp EESSCCC-------CCCCEEEEEETTSCGGGCEE--------EESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEE
T ss_pred EEecCcccccccccCCCcEEEEEECCCCcccceE--------EEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEE
Confidence 55421 135999998543222111 111133 45567889999999944455542 35899
Q ss_pred EEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-C---CeEEEEEcCCCcc
Q 037120 238 IWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-H---GSIYLWDLRGGRT 290 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-d---g~i~lwd~~~~~~ 290 (489)
++|+.++..... .+..+....... ++++|..++..+. + +.|..+|+.++..
T Consensus 263 ~~d~~~~~~~~~-~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~ 317 (693)
T 3iuj_A 263 VKDLSQENAPLL-TVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP 317 (693)
T ss_dssp EEETTSTTCCCE-EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG
T ss_pred EEECCCCCCceE-EEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc
Confidence 999987642222 334455555554 6777776665554 3 6799999887643
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.8e-07 Score=89.15 Aligned_cols=261 Identities=13% Similarity=-0.000 Sum_probs=148.9
Q ss_pred EEEECCCCcEEEEEe----------cCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 101 ALDFDCKGIYLVSAT----------RSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 101 ~~~fs~~g~~la~g~----------~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
.++|+|||++|.++. .++.|.+||..+.+.....+ ........ +... -..++|+|+++.+
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~------~~~~~~~~-~g~~---p~~~~~spDG~~l 139 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIE------LPDAPRFD-VGPY---SWMNANTPNNADL 139 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEE------CCCccccc-cCCC---ccceEECCCCCEE
Confidence 889999999998886 36789999998754443210 00000000 0011 2349999999866
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeee-ceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKT-RRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
+++....++.|.++| .... .+.. ... . .++.+.|+++..+++.+.||.+.++|. +++. .
T Consensus 140 ~v~n~~~~~~v~viD-~t~~-----~~~~~i~~-----~------~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~--~ 199 (373)
T 2mad_H 140 LFFQFAAGPAVGLVV-QGGS-----SDDQLLSS-----P------TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGA--A 199 (373)
T ss_pred EEEecCCCCeEEEEE-CCCC-----EEeEEcCC-----C------ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcE--E
Confidence 665533237899999 6442 2211 110 1 124566777667788889999999999 6652 2
Q ss_pred eecc-----CCCCc-eeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc--cceeecCCccCCCCeeEEEeCCCCcceeecc
Q 037120 250 ELST-----GSHGT-LNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT--SAPFHNHKEVCHLPLTSLKLASMLEKIGTLK 321 (489)
Q Consensus 250 ~~~~-----~h~~~-v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~ 321 (489)
.... ....+ .....+.+++..++..+..+.+.+.|+.+... +..+...... .....|.|.+.
T Consensus 200 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~----~~~~~~~p~g~------ 269 (373)
T 2mad_H 200 GAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGG----RKADTWRPGGW------ 269 (373)
T ss_pred EEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCc----ccccceecCce------
Confidence 1110 11112 12355677766656556788999999976432 2222211111 11222333321
Q ss_pred ccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEe
Q 037120 322 AQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVG 401 (489)
Q Consensus 322 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 401 (489)
..+.++|++.++++...... .+..
T Consensus 270 ----------~~~~~s~d~~~lyV~~~~~~--------------------~~~~-------------------------- 293 (373)
T 2mad_H 270 ----------QQVAYLKSSDGIYLLTSEQS--------------------AWKL-------------------------- 293 (373)
T ss_pred ----------EeEEECCCCCEEEEEeccCC--------------------cccc--------------------------
Confidence 22345555554433221100 0000
Q ss_pred ecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCC-eEEecc-CcceeEEEeccc
Q 037120 402 SSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN-TIVAGT-KNSSLLVVSQKQ 479 (489)
Q Consensus 402 gs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~-~i~sgs-~dg~i~v~~~~~ 479 (489)
...++.|.++|..+. +.+..+. ......+++|+|+++ .++++. .++.|.||..+.
T Consensus 294 ~~~~~~V~VID~~t~----------~vv~~i~-------------~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t 350 (373)
T 2mad_H 294 HAAAKEVTSVTGLVG----------QTSSQIS-------------LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGA 350 (373)
T ss_pred cCCCCeEEEEECCCC----------EEEEEEE-------------CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 002457999999888 6666554 233578999999998 777776 589999997654
Q ss_pred c
Q 037120 480 Q 480 (489)
Q Consensus 480 ~ 480 (489)
.
T Consensus 351 ~ 351 (373)
T 2mad_H 351 G 351 (373)
T ss_pred C
Confidence 3
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.4e-08 Score=91.07 Aligned_cols=186 Identities=10% Similarity=0.053 Sum_probs=126.1
Q ss_pred EEEEEeCCCcEEEEECCCCCcCceeeccCCC-CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCC-ccCCC
Q 037120 226 RLIASDTHGVVNIWDRRVGVLPSLELSTGSH-GTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHK-EVCHL 303 (489)
Q Consensus 226 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~-~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~-~~~~~ 303 (489)
+|++++.|+.|.+||..+++ .+-.+..+. ..+.++.+.|+|++++ +.++.|+.||. +++.+..+.... ..
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~--~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~--- 78 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKE--IVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCE--- 78 (276)
T ss_dssp EEEECTTCSEEEEEETTTTE--EEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCE---
T ss_pred EEEeeCCCCEEEEEECCCCe--EEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcc---
Confidence 89999999999999998887 443444443 4688999999999887 45788999999 888888887642 23
Q ss_pred CeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccc
Q 037120 304 PLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQ 383 (489)
Q Consensus 304 ~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (489)
+.++.+.++|..+..... ....-+.++++++.+-.+..+.. ....+
T Consensus 79 -~~~~~~~~dG~~lv~~~~------~~~~v~~vd~~Gk~l~~~~~~~~-----------~~~~~---------------- 124 (276)
T 3no2_A 79 -MQTARILPDGNALVAWCG------HPSTILEVNMKGEVLSKTEFETG-----------IERPH---------------- 124 (276)
T ss_dssp -EEEEEECTTSCEEEEEES------TTEEEEEECTTSCEEEEEEECCS-----------CSSGG----------------
T ss_pred -ccccEECCCCCEEEEecC------CCCEEEEEeCCCCEEEEEeccCC-----------CCccc----------------
Confidence 888899999988764211 01123456677665433322110 00000
Q ss_pred cCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeE
Q 037120 384 LHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTI 463 (489)
Q Consensus 384 ~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i 463 (489)
...+.++..++ +.++++.+.++.|.+||.. + +.+..+. . ...+.++.+.|+++.+
T Consensus 125 ~~~~~v~~~~~-G~~lv~~~~~~~v~~~d~~-G----------~~~w~~~------------~-~~~~~~~~~~~~g~~~ 179 (276)
T 3no2_A 125 AQFRQINKNKK-GNYLVPLFATSEVREIAPN-G----------QLLNSVK------------L-SGTPFSSAFLDNGDCL 179 (276)
T ss_dssp GSCSCCEECTT-SCEEEEETTTTEEEEECTT-S----------CEEEEEE------------C-SSCCCEEEECTTSCEE
T ss_pred ccccCceECCC-CCEEEEecCCCEEEEECCC-C----------CEEEEEE------------C-CCCccceeEcCCCCEE
Confidence 00112233333 5677888899999999988 7 6665554 2 2345678888999999
Q ss_pred EeccCcceeEEEecc
Q 037120 464 VAGTKNSSLLVVSQK 478 (489)
Q Consensus 464 ~sgs~dg~i~v~~~~ 478 (489)
++++.++.|..+..+
T Consensus 180 v~~~~~~~v~~~d~~ 194 (276)
T 3no2_A 180 VACGDAHCFVQLNLE 194 (276)
T ss_dssp EECBTTSEEEEECTT
T ss_pred EEeCCCCeEEEEeCc
Confidence 999988888887665
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-07 Score=88.59 Aligned_cols=151 Identities=11% Similarity=-0.067 Sum_probs=93.6
Q ss_pred eeEEEECCC-CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 99 ISALDFDCK-GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 99 V~~~~fs~~-g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
..+.+|+|+ +.+++++..++.|.+||..+..... . .... .+.+++|++++. ++++ ..
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~---------~-------~~~~---~v~~i~~~~dg~-l~v~-~~- 108 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV---------H-------ALPF---MGSALAKISDSK-QLIA-SD- 108 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE---------E-------ECSS---CEEEEEEEETTE-EEEE-ET-
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE---------E-------ECCC---cceEEEEeCCCe-EEEE-EC-
Confidence 457789997 5566777778999999988733221 0 0111 288899999975 5544 32
Q ss_pred CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeC------CCcEEEEECCCCCcCceee
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT------HGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~ 251 (489)
..|.+||...+. . ..+.... .......++++++.|+|. ++++... .+.|..+| +++ +..
T Consensus 109 -~gl~~~d~~~g~--~-~~~~~~~-----~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~---~~~ 173 (326)
T 2ghs_A 109 -DGLFLRDTATGV--L-TLHAELE-----SDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGK---VTK 173 (326)
T ss_dssp -TEEEEEETTTCC--E-EEEECSS-----TTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTE---EEE
T ss_pred -CCEEEEECCCCc--E-EEEeeCC-----CCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCc---EEE
Confidence 459999974321 0 1111100 011124688999999998 6655432 24566666 333 212
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcC
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLR 286 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~ 286 (489)
+..+....+.++|+|+++.++.+.. ++.|.+||+.
T Consensus 174 ~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~ 209 (326)
T 2ghs_A 174 LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD 209 (326)
T ss_dssp EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred eeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcc
Confidence 2222345678999999998766654 7899999986
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.2e-07 Score=89.45 Aligned_cols=278 Identities=6% Similarity=-0.041 Sum_probs=152.6
Q ss_pred eeEEEeeCCCCCEEEEEec-CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeC----
Q 037120 158 LDAVRWNLANQDEVACAST-RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT---- 232 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~-d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~---- 232 (489)
...+++++++. ++++... +++.++||.+.. . . +.+.........+|...+..+++.+++. ++++-..
T Consensus 19 p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~---g--~-~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~ 90 (343)
T 2qe8_A 19 PGNITLTPDGR-LFLSLHQFYQPEMQVAELTQ---D--G-LIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSK 90 (343)
T ss_dssp EEEEEECTTSC-EEEEECGGGCCSCSEEEEET---T--E-EEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHT
T ss_pred cceEEECCCCC-EEEEeCCCCCCceEEEEECC---C--C-eecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcC
Confidence 77899999985 6766531 114377777741 1 1 1111100011245667899999999987 5554433
Q ss_pred -CCcEEEEECCCCCcCceeecc------CCCCceeEEEEeecCCEEEEE-e---CCCeEEEEEcCCCcccceeecCCccC
Q 037120 233 -HGVVNIWDRRVGVLPSLELST------GSHGTLNSIQLHAENQIIFAA-G---KHGSIYLWDLRGGRTSAPFHNHKEVC 301 (489)
Q Consensus 233 -dg~i~iwd~~~~~~~~~~~~~------~h~~~v~~~~~~p~~~~l~~~-~---~dg~i~lwd~~~~~~~~~~~~~~~~~ 301 (489)
++.|.+||+.+++ .++.+. .+...+..++++|++..++.+ . .++.|.+||+.+++....+..|....
T Consensus 91 ~~~~i~~~d~~tg~--~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~ 168 (343)
T 2qe8_A 91 SVPKLVAWDTLNNQ--LSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIA 168 (343)
T ss_dssp SCCEEEEEETTTTE--EEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTS
T ss_pred CCCeEEEEECCCCe--EEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccc
Confidence 5789999998876 222221 223456899999876555544 4 57899999999887655554432220
Q ss_pred CCCeeEEEeCCCCcceeecccccee--eccceeEEEeCCCCCeEEEEEecCCceEEEEee---cccee--eecCCCCCCc
Q 037120 302 HLPLTSLKLASMLEKIGTLKAQSKI--VSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVY---NSRVS--HVHCPPPAWL 374 (489)
Q Consensus 302 ~~~v~~l~~~~~~~~i~~~~~~~~~--~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~---~~~~~--~~~~~~~~~~ 374 (489)
..+ ..+.++|..+......... ....+..++++|+++.++.....+...-.++.. .+... .+.. .+.
T Consensus 169 ~~~---~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~ 242 (343)
T 2qe8_A 169 PED---IDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGS---KIE 242 (343)
T ss_dssp CCS---CCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHT---TCE
T ss_pred ccc---cceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhc---ceE
Confidence 001 2233344333211111000 112457899999998888776655411111110 00000 0000 000
Q ss_pred CCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEE
Q 037120 375 SDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTAC 454 (489)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 454 (489)
.. ...-....+++.++ +.+.++...++.|.+||..++ +...... .++...+.++
T Consensus 243 ~~----g~~g~pdgia~d~~-G~l~va~~~~~~V~~~d~~~G----------~~~~~~~-----------~~~~~~p~~v 296 (343)
T 2qe8_A 243 RY----SEKPICDGISIDKD-HNIYVGDLAHSAIGVITSADR----------AYKLLVT-----------DEKLSWTDSF 296 (343)
T ss_dssp EE----EECCSCSCEEECTT-CCEEEEEGGGTEEEEEETTTT----------EEEEEEE-----------CGGGSCEEEE
T ss_pred ec----ccCCCCceEEECCC-CCEEEEccCCCeEEEEECCCC----------CEEEEEE-----------CCceecCCee
Confidence 00 00001233556666 456667788899999998445 2211111 0223458999
Q ss_pred EeeCCCCeEEeccCcceeEEEec
Q 037120 455 VTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 455 a~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
+|.|++..+++.+..+.+.+|..
T Consensus 297 a~~~~g~l~v~~~~~~~~~~f~~ 319 (343)
T 2qe8_A 297 NFGSDGYLYFDCNQLHHSAPLNA 319 (343)
T ss_dssp EECTTSCEEEEECCGGGSGGGBT
T ss_pred EECCCCcEEEEeCcccccccccc
Confidence 99999988888877776655543
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=3.8e-06 Score=77.01 Aligned_cols=237 Identities=9% Similarity=-0.009 Sum_probs=138.4
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
+.++++.+++. ++++...+ +.|.+||.. . . . . .+. ...+...+.++++.+++. ++++...++.|.
T Consensus 17 ~~~i~~d~~g~-l~v~~~~~-~~v~~~d~~-~--~---~-~---~~~--~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~ 81 (299)
T 2z2n_A 17 PYGITVSDKGK-VWITQHKA-NMISCINLD-G--K---I-T---EYP--LPTPDAKVMCLTISSDGE-VWFTENAANKIG 81 (299)
T ss_dssp EEEEEECTTSC-EEEEETTT-TEEEEECTT-C--C---E-E---EEE--CSSTTCCEEEEEECTTSC-EEEEETTTTEEE
T ss_pred ccceEECCCCC-EEEEecCC-CcEEEEcCC-C--C---e-E---Eec--CCcccCceeeEEECCCCC-EEEeCCCCCeEE
Confidence 88899999985 66655545 899999983 1 1 1 1 110 122345789999999988 777777788999
Q ss_pred EEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccc-eeecCCccCCCCeeEEEeCCCCcc
Q 037120 238 IWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSA-PFHNHKEVCHLPLTSLKLASMLEK 316 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~ 316 (489)
.||.. ++...+ ........+..+++++++.+.++...++.|..||. +++... ........ +..+++.++|..
T Consensus 82 ~~~~~-g~~~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~----~~~i~~~~~g~l 154 (299)
T 2z2n_A 82 RITKK-GIIKEY-TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSY----PSFITLGSDNAL 154 (299)
T ss_dssp EECTT-SCEEEE-ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCC----EEEEEECTTSCE
T ss_pred EECCC-CcEEEE-eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCC----CceEEEcCCCCE
Confidence 99976 331111 11123457889999999987777767889999998 544321 11112222 677777777654
Q ss_pred eeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCc
Q 037120 317 IGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNS 396 (489)
Q Consensus 317 i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (489)
...... ...|. .+++++.. ...... ... .....+++.+++.
T Consensus 155 ~v~~~~-----~~~i~--~~~~~g~~---------------------~~~~~~-~~~----------~~~~~i~~~~~g~ 195 (299)
T 2z2n_A 155 WFTENQ-----NNAIG--RITESGDI---------------------TEFKIP-TPA----------SGPVGITKGNDDA 195 (299)
T ss_dssp EEEETT-----TTEEE--EECTTCCE---------------------EEEECS-STT----------CCEEEEEECTTSS
T ss_pred EEEeCC-----CCEEE--EEcCCCcE---------------------EEeeCC-CCC----------CcceeEEECCCCC
Confidence 432100 00111 12222111 100000 000 0011234444544
Q ss_pred EEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 397 IYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 397 ~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
+.++...++.|.+||. ++ +.. .+..+ .+...+.+++++|++...++...++.|.+|.
T Consensus 196 -l~v~~~~~~~i~~~~~-~g----------~~~-~~~~~----------~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d 252 (299)
T 2z2n_A 196 -LWFVEIIGNKIGRITT-SG----------EIT-EFKIP----------TPNARPHAITAGAGIDLWFTEWGANKIGRLT 252 (299)
T ss_dssp -EEEEETTTTEEEEECT-TC----------CEE-EEECS----------STTCCEEEEEECSTTCEEEEETTTTEEEEEE
T ss_pred -EEEEccCCceEEEECC-CC----------cEE-EEECC----------CCCCCceeEEECCCCCEEEeccCCceEEEEC
Confidence 4555556788999998 55 221 11100 3446789999999999777776778888887
Q ss_pred cc
Q 037120 477 QK 478 (489)
Q Consensus 477 ~~ 478 (489)
.+
T Consensus 253 ~~ 254 (299)
T 2z2n_A 253 SN 254 (299)
T ss_dssp TT
T ss_pred CC
Confidence 53
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.90 E-value=2.1e-07 Score=85.87 Aligned_cols=189 Identities=11% Similarity=0.062 Sum_probs=119.0
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..+.+++++++|+++++ . ++.|.+||.++....... .... ......+..++++|++. ++++...
T Consensus 54 ~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~------~~~~-------~~~~~~~~di~~d~dG~-l~~~~~~ 117 (297)
T 3g4e_A 54 APVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLA------TVDN-------DKKNNRFNDGKVDPAGR-YFAGTMA 117 (297)
T ss_dssp SCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEE------ECCT-------TCSSEEEEEEEECTTSC-EEEEEEE
T ss_pred CceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEE------ecCC-------CCCCCCCCCEEECCCCC-EEEecCC
Confidence 45899999999996555 3 567999998874332210 0000 00112277899999986 5554432
Q ss_pred C--------CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECC--CCCc
Q 037120 177 R--------SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRR--VGVL 246 (489)
Q Consensus 177 d--------~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~--~~~~ 246 (489)
. ...-.||.+.... .. ..+ ..+....+.++|+|+++.++++.+.++.|.+||+. ++..
T Consensus 118 ~~~~~~~~~~~~~~l~~~d~~g-~~-~~~----------~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~ 185 (297)
T 3g4e_A 118 EETAPAVLERHQGALYSLFPDH-HV-KKY----------FDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQI 185 (297)
T ss_dssp CCSBTTBCCTTCEEEEEECTTS-CE-EEE----------EEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCE
T ss_pred cccccccccCCCcEEEEEECCC-CE-EEE----------eeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcc
Confidence 1 0234566653221 10 111 11123567899999998455666678999999973 4431
Q ss_pred C---ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeC-CCCcce
Q 037120 247 P---SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLA-SMLEKI 317 (489)
Q Consensus 247 ~---~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~~i 317 (489)
. .+..+..+......++++++|.+.++....+.|..||..+++.+..+..+... +++++|. |+++.+
T Consensus 186 ~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~----~t~~~f~g~d~~~L 256 (297)
T 3g4e_A 186 SNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDK----TTSCCFGGKNYSEM 256 (297)
T ss_dssp EEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSB----EEEEEEESGGGCEE
T ss_pred cCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCC----ceEEEEeCCCCCEE
Confidence 1 11122223456789999999987777777889999999988888777765545 8888887 666544
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.87 E-value=5.3e-08 Score=102.07 Aligned_cols=141 Identities=10% Similarity=-0.039 Sum_probs=79.8
Q ss_pred eCCCCCEEEEEecCCC--EEEEEEeccC---CCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC-----
Q 037120 164 NLANQDEVACASTRSN--VVSIYDIGYI---SDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH----- 233 (489)
Q Consensus 164 ~~~~~~~l~s~~~d~g--~i~vwd~~~~---~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d----- 233 (489)
.|++..++.+.... + .-.+|-.... .......+.... + -.+|...+..++|+|||+ +|+.++.+
T Consensus 115 ~pdG~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~lld~~~-l---~~~~~~~~~~~~~SPDG~-~la~~~~~~G~e~ 188 (741)
T 1yr2_A 115 QRRGASVFYSWNSG-LMNQSQLLVRPADAPVGTKGRVLLDPNT-W---AKDGATALDAWAASDDGR-LLAYSVQDGGSDW 188 (741)
T ss_dssp EEETTEEEEEEECS-SCSSCEEEEEETTSCTTCCCEEEECGGG-C---C----EEEEEEEECTTSS-EEEEEEEETTCSE
T ss_pred EEECCEEEEEEEcC-CCeEEEEEEEcCCccCCCCCEEEECHHH-h---ccCCCEEEEeEEECCCCC-EEEEEEcCCCCce
Confidence 47887555555433 3 3556655322 222212222111 1 033445788999999999 66665533
Q ss_pred CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCe--------------EEEEEcCCCccc--ceeec-
Q 037120 234 GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGS--------------IYLWDLRGGRTS--APFHN- 296 (489)
Q Consensus 234 g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~--------------i~lwd~~~~~~~--~~~~~- 296 (489)
..|++||+.+++ .+.. ..+...+..++|+|| +.|+.++.|+. |++|++.++... ..+..
T Consensus 189 ~~i~v~dl~tg~--~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~ 264 (741)
T 1yr2_A 189 RTVKFVGVADGK--PLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATP 264 (741)
T ss_dssp EEEEEEETTTCC--EEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCT
T ss_pred EEEEEEECCCCC--CCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccC
Confidence 359999999987 3322 111222367899999 98888877543 889998876531 12221
Q ss_pred -CCccCCCCeeEEEeCCCCccee
Q 037120 297 -HKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 297 -~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
+... +..+.|+|||+.+.
T Consensus 265 ~~~~~----~~~~~~SpDG~~l~ 283 (741)
T 1yr2_A 265 ELPKR----GHGASVSSDGRWVV 283 (741)
T ss_dssp TCTTC----EEEEEECTTSCEEE
T ss_pred CCCeE----EEEEEECCCCCEEE
Confidence 1112 56666666666554
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.3e-07 Score=84.09 Aligned_cols=155 Identities=12% Similarity=0.067 Sum_probs=99.6
Q ss_pred eeEEEECCCCc-EEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 99 ISALDFDCKGI-YLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 99 V~~~~fs~~g~-~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
.....|+|+|+ +++++..++.|..|+.... ... + ..+... +..+++++++. ++++...+
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~-~~~---------~------~~~~~~---~~gl~~d~dG~-l~v~~~~~ 106 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWREDGT-VDV---------L------LDATAF---TNGNAVDAQQR-LVHCEHGR 106 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTSC-EEE---------E------EESCSC---EEEEEECTTSC-EEEEETTT
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeCCCC-EEE---------E------eCCCCc---cceeeECCCCC-EEEEECCC
Confidence 56788999998 6677778899999987431 111 1 111222 77899999985 66665544
Q ss_pred CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEE----EeC-------------CCcEEEEE
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIA----SDT-------------HGVVNIWD 240 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s----~s~-------------dg~i~iwd 240 (489)
+.|.+||.. + . ...+... . .......++++++.++|. +++| |.. .+.|..||
T Consensus 107 -~~v~~~~~~-g--~-~~~~~~~--~---~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d 175 (305)
T 3dr2_A 107 -RAITRSDAD-G--Q-AHLLVGR--Y---AGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLP 175 (305)
T ss_dssp -TEEEEECTT-S--C-EEEEECE--E---TTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred -CEEEEECCC-C--C-EEEEEec--c---CCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEc
Confidence 789999873 1 1 1111110 0 011123578899999998 7775 331 25688888
Q ss_pred CCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCC------CeEEEEEcCCC
Q 037120 241 RRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKH------GSIYLWDLRGG 288 (489)
Q Consensus 241 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~d------g~i~lwd~~~~ 288 (489)
..+++...+ . .....+.++|+|+++.|+.+... +.|++||+..+
T Consensus 176 ~~~g~~~~~--~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~ 225 (305)
T 3dr2_A 176 PDGSPLQRM--A--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG 225 (305)
T ss_dssp SSSCCCEEE--E--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred CCCCcEEEE--e--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence 766652222 1 23456789999999988887664 68888887653
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.85 E-value=1.3e-06 Score=82.40 Aligned_cols=154 Identities=8% Similarity=-0.109 Sum_probs=97.1
Q ss_pred EEECCCCcEEEEEec-----CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe-
Q 037120 102 LDFDCKGIYLVSATR-----SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS- 175 (489)
Q Consensus 102 ~~fs~~g~~la~g~~-----dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~- 175 (489)
....|+++.+.+... ++.|.+.|..+.+.... ...... - .++++|+++.++++..
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~----------------I~vG~~--P-~va~spDG~~lyVan~~ 98 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM----------------IDGGFL--P-NPVVADDGSFIAHASTV 98 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE----------------EEECSS--C-EEEECTTSSCEEEEEEE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEE----------------EECCCC--C-cEEECCCCCEEEEEccc
Confidence 456799988877765 68999999998554431 111111 1 2999999987777652
Q ss_pred --------cCCCEEEEEEeccCCCCCceeeeeceeeeeecCC----cccCeeEEEEecCCCcEEEEEe--CCCcEEEEEC
Q 037120 176 --------TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSD----VQKGLSDLAFSAVNTSRLIASD--THGVVNIWDR 241 (489)
Q Consensus 176 --------~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~----h~~~v~~~~~~~~~~~~l~s~s--~dg~i~iwd~ 241 (489)
.+ +.|.+||.... +.+...... .+ ....-..++|+|||+ +++.+. .++.|.++|+
T Consensus 99 ~~r~~~G~~~-~~VsviD~~t~-----~v~~~I~v~----~g~r~~~g~~P~~~a~spDGk-~lyVan~~~~~~VsVID~ 167 (386)
T 3sjl_D 99 FSRIARGERT-DYVEVFDPVTL-----LPTADIELP----DAPRFLVGTYPWMTSLTPDGK-TLLFYQFSPAPAVGVVDL 167 (386)
T ss_dssp EEETTEEEEE-EEEEEECTTTC-----CEEEEEEET----TCCCCCBSCCGGGEEECTTSS-EEEEEECSSSCEEEEEET
T ss_pred ccccccCCCC-CEEEEEECCCC-----eEEEEEECC----CccccccCCCCceEEEcCCCC-EEEEEEcCCCCeEEEEEC
Confidence 23 78999999432 222222110 00 012345689999999 666555 3689999999
Q ss_pred CCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC-Ccc
Q 037120 242 RVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRG-GRT 290 (489)
Q Consensus 242 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~-~~~ 290 (489)
.+.+ .+..+.-. + . ...+....+.+++.+.||.+.+.++.+ ++.
T Consensus 168 ~t~~--vv~tI~v~-g-~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v 212 (386)
T 3sjl_D 168 EGKA--FKRMLDVP-D-C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTP 212 (386)
T ss_dssp TTTE--EEEEEECC-S-E-EEEEEEETTEEEEEETTSCEEEEECCSSSCC
T ss_pred CCCc--EEEEEECC-C-c-ceeecCCCceeEEECCCCCEEEEECCCCCeE
Confidence 9876 44444211 1 1 223333455667778899999999976 543
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.80 E-value=2.7e-07 Score=85.64 Aligned_cols=161 Identities=11% Similarity=0.178 Sum_probs=106.8
Q ss_pred ceeEEEECCCCcEEEEEecC---------------CeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEE
Q 037120 98 GISALDFDCKGIYLVSATRS---------------GCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVR 162 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~d---------------g~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~ 162 (489)
.+.+++++++|+++++...+ +.|..||... .... ... +... ...++
T Consensus 118 ~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~~---------~~~------~~~~---~~~i~ 178 (314)
T 1pjx_A 118 GCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQ---------VDT------AFQF---PNGIA 178 (314)
T ss_dssp CCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEE---------EEE------EESS---EEEEE
T ss_pred CCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCC-CEEE---------ecc------CCCC---cceEE
Confidence 48899999999988877655 4566666542 1111 111 1111 56789
Q ss_pred ee----CCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcc-cCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 163 WN----LANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQ-KGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 163 ~~----~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
|+ |++..++++...+ +.|.+||+... ..+.... ....+.++. .....+++.++|. ++++...++.|.
T Consensus 179 ~~~~~d~dg~~l~v~~~~~-~~i~~~~~~~~-----g~~~~~~-~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~ 250 (314)
T 1pjx_A 179 VRHMNDGRPYQLIVAETPT-KKLWSYDIKGP-----AKIENKK-VWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIE 250 (314)
T ss_dssp EEECTTSCEEEEEEEETTT-TEEEEEEEEET-----TEEEEEE-EEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEE
T ss_pred EecccCCCCCEEEEEECCC-CeEEEEECCCC-----Cccccce-EEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEE
Confidence 99 9876566666555 89999998411 0111111 111223343 5678899999998 777777789999
Q ss_pred EEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCC
Q 037120 238 IWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRG 287 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~ 287 (489)
+||..+++ .+..+..+...+.+++|+|+++.|++++. ++.|..||+..
T Consensus 251 ~~d~~~g~--~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 251 VFGPDGGQ--PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EECTTCBS--CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEcCCCCc--EeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99988655 33344455577899999999996666654 78999999875
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.73 E-value=1.8e-06 Score=81.46 Aligned_cols=162 Identities=12% Similarity=0.060 Sum_probs=94.0
Q ss_pred EEEECCCCcEEEEEe----------cCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 101 ALDFDCKGIYLVSAT----------RSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 101 ~~~fs~~g~~la~g~----------~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
.++++|||++|.+++ .++.|.+||..+.+...... .+.......-.. -..++|+|+++.+
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~-------v~~g~r~~~g~~---P~~~a~spDGk~l 151 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIE-------LPDAPRFLVGTY---PWMTSLTPDGKTL 151 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEE-------ETTCCCCCBSCC---GGGEEECTTSSEE
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEE-------CCCccccccCCC---CceEEEcCCCCEE
Confidence 389999999887765 36789999999865544210 000000000012 2339999999866
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCC-CCcCce
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRV-GVLPSL 249 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~ 249 (489)
+++....++.|.++|+... +++..... .+ . ....|.+...+++.+.||.+.+.++.. ++....
T Consensus 152 yVan~~~~~~VsVID~~t~-----~vv~tI~v-----~g----~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~ 215 (386)
T 3sjl_D 152 LFYQFSPAPAVGVVDLEGK-----AFKRMLDV-----PD----C--YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEIT 215 (386)
T ss_dssp EEEECSSSCEEEEEETTTT-----EEEEEEEC-----CS----E--EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEE
T ss_pred EEEEcCCCCeEEEEECCCC-----cEEEEEEC-----CC----c--ceeecCCCceeEEECCCCCEEEEECCCCCeEEEe
Confidence 6665432389999999332 34333321 11 1 122355544777888899999999876 332100
Q ss_pred --eeccCCCCcee-EEEEe-ecCCEEEEEeCCCeEEEEEcCCCc
Q 037120 250 --ELSTGSHGTLN-SIQLH-AENQIIFAAGKHGSIYLWDLRGGR 289 (489)
Q Consensus 250 --~~~~~h~~~v~-~~~~~-p~~~~l~~~~~dg~i~lwd~~~~~ 289 (489)
..+..-..++. ...|. ++|++++ .+.+|.|++.|+.+..
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~ 258 (386)
T 3sjl_D 216 HTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGD 258 (386)
T ss_dssp ECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSS
T ss_pred ecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCc
Confidence 01111112222 24664 6776655 5568999999997654
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.8e-05 Score=72.46 Aligned_cols=236 Identities=10% Similarity=-0.025 Sum_probs=137.4
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
+.++++.+++. ++++...+ +.|.+||.. . . . .. + .+..+...+.++++.+++. ++++...++.|.
T Consensus 22 p~~i~~d~~g~-l~v~~~~~-~~v~~~~~~-~--~---~-~~---~--~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~v~ 86 (300)
T 2qc5_A 22 PYGITSSEDGK-VWFTQHKA-NKISSLDQS-G--R---I-KE---F--EVPTPDAKVMCLIVSSLGD-IWFTENGANKIG 86 (300)
T ss_dssp EEEEEECTTSC-EEEEETTT-TEEEEECTT-S--C---E-EE---E--ECSSTTCCEEEEEECTTSC-EEEEETTTTEEE
T ss_pred cceeeECCCCC-EEEEcCCC-CeEEEECCC-C--c---e-EE---E--ECCCCCCcceeEEECCCCC-EEEEecCCCeEE
Confidence 78899999875 66666555 899999973 1 1 1 10 1 0122345789999999888 777766688999
Q ss_pred EEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccc-eeecCCccCCCCeeEEEeCCCCcc
Q 037120 238 IWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSA-PFHNHKEVCHLPLTSLKLASMLEK 316 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~ 316 (489)
.||.. ++.... ........+.++++++++.+.++...++.|..||.. ++... .+...... +..+++.+++..
T Consensus 87 ~~d~~-g~~~~~-~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~----~~~i~~d~~g~l 159 (300)
T 2qc5_A 87 KLSKK-GGFTEY-PLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSY----PAFITLGSDNAL 159 (300)
T ss_dssp EECTT-SCEEEE-ECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCC----EEEEEECTTSSE
T ss_pred EECCC-CCeEEe-cCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCC----ceeEEECCCCCE
Confidence 99987 542211 111234678899999999877776668899999987 54321 12212223 677777777764
Q ss_pred eeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCc
Q 037120 317 IGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNS 396 (489)
Q Consensus 317 i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (489)
...... ...|. .+++++.... .... . .. .....+++.+++
T Consensus 160 ~v~~~~-----~~~i~--~~~~~g~~~~-~~~~-----------~----------~~----------~~~~~i~~d~~g- 199 (300)
T 2qc5_A 160 WFTENQ-----NNSIG--RITNTGKLEE-YPLP-----------T----------NA----------AAPVGITSGNDG- 199 (300)
T ss_dssp EEEETT-----TTEEE--EECTTCCEEE-EECS-----------S----------TT----------CCEEEEEECTTS-
T ss_pred EEEecC-----CCeEE--EECCCCcEEE-eeCC-----------C----------CC----------CCcceEEECCCC-
Confidence 432110 01111 1222221110 0000 0 00 001123334444
Q ss_pred EEEEeecCCCcEEEEeccCCCCCCeeeccCcccch-hhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEE
Q 037120 397 IYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIES-LSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVV 475 (489)
Q Consensus 397 ~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~ 475 (489)
.+.++....+.|.+||. .+ +.... +. .+...+.+++++|++...++...++.|..|
T Consensus 200 ~l~v~~~~~~~i~~~~~-~g----------~~~~~~~~------------~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~ 256 (300)
T 2qc5_A 200 ALWFVEIMGNKIGRITT-TG----------EISEYDIP------------TPNARPHAITAGKNSEIWFTEWGANQIGRI 256 (300)
T ss_dssp SEEEEETTTTEEEEECT-TC----------CEEEEECS------------STTCCEEEEEECSTTCEEEEETTTTEEEEE
T ss_pred CEEEEccCCCEEEEEcC-CC----------cEEEEECC------------CCCCCceEEEECCCCCEEEeccCCCeEEEE
Confidence 44455455678999987 33 22111 11 234568899999999877777777888888
Q ss_pred ecc
Q 037120 476 SQK 478 (489)
Q Consensus 476 ~~~ 478 (489)
..+
T Consensus 257 ~~~ 259 (300)
T 2qc5_A 257 TND 259 (300)
T ss_dssp CTT
T ss_pred CCC
Confidence 753
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.70 E-value=2.9e-06 Score=79.27 Aligned_cols=186 Identities=16% Similarity=0.038 Sum_probs=111.4
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..+.+++|+++|+++++. .+ .|.+||..+....... ... .......+.+++++|++. ++++...
T Consensus 90 ~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~------~~~-------~~~~~~~~~~i~~d~~G~-l~v~~~~ 153 (326)
T 2ghs_A 90 FMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA------ELE-------SDLPGNRSNDGRMHPSGA-LWIGTMG 153 (326)
T ss_dssp SCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE------CSS-------TTCTTEEEEEEEECTTSC-EEEEEEE
T ss_pred CcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe------eCC-------CCCCCCCCCCEEECCCCC-EEEEeCC
Confidence 468999999999877754 44 4899998764332110 000 000111278899999986 5554432
Q ss_pred C---CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECC--CC-CcC---
Q 037120 177 R---SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRR--VG-VLP--- 247 (489)
Q Consensus 177 d---~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~--~~-~~~--- 247 (489)
+ .+...||.+..+ .. ..+ ..+....+.++|+|+++.++++.+.++.|.+||+. ++ +..
T Consensus 154 ~~~~~~~~~l~~~~~g--~~-~~~----------~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~ 220 (326)
T 2ghs_A 154 RKAETGAGSIYHVAKG--KV-TKL----------FADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAE 220 (326)
T ss_dssp TTCCTTCEEEEEEETT--EE-EEE----------EEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCE
T ss_pred CcCCCCceEEEEEeCC--cE-EEe----------eCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCce
Confidence 1 023445554311 10 111 11123567899999998344555567899999986 44 211
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeC-CCCcc
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLA-SMLEK 316 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~~ 316 (489)
.+..+.........++++++|.+.++...++.|.+||. +++.+..+..+... +++++|. +++..
T Consensus 221 ~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~----~~~~af~g~d~~~ 285 (326)
T 2ghs_A 221 VFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQ----TTCPAFIGPDASR 285 (326)
T ss_dssp EEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSB----EEEEEEESTTSCE
T ss_pred EEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCC----cEEEEEecCCCCE
Confidence 12122223456778999999987777666789999998 56655566544434 7777776 55543
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.3e-06 Score=80.33 Aligned_cols=258 Identities=9% Similarity=-0.039 Sum_probs=147.7
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe---------CCCcEEEEECCCCCcCce
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD---------THGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s---------~dg~i~iwd~~~~~~~~~ 249 (489)
+.|.++|.. ..+++..... +. .+ .++++||++.++++.. .++.|.++|..+.+ .+
T Consensus 99 ~~VsVID~~-----t~~vv~~I~v------G~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~--vv 162 (426)
T 3c75_H 99 TQQFVIDGS-----TGRILGMTDG------GF-LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL--PI 162 (426)
T ss_dssp EEEEEEETT-----TTEEEEEEEE------CS-SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC--EE
T ss_pred CeEEEEECC-----CCEEEEEEEC------CC-CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc--EE
Confidence 699999993 2244433331 11 23 7999999994444432 46799999999876 33
Q ss_pred eecc-C------CCCceeEEEEeecCCEEEEEeC--CCeEEEEEcCCCcccceeecCCccC---CCCeeEEEeCCCCcce
Q 037120 250 ELST-G------SHGTLNSIQLHAENQIIFAAGK--HGSIYLWDLRGGRTSAPFHNHKEVC---HLPLTSLKLASMLEKI 317 (489)
Q Consensus 250 ~~~~-~------h~~~v~~~~~~p~~~~l~~~~~--dg~i~lwd~~~~~~~~~~~~~~~~~---~~~v~~l~~~~~~~~i 317 (489)
..+. + .......++|+|+|++++++.. ++.|.+.|+.+++.+..+....... ...-..+.++++|+.+
T Consensus 163 ~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~ 242 (426)
T 3c75_H 163 ADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLA 242 (426)
T ss_dssp EEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEE
T ss_pred EEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEE
Confidence 3322 1 0123457899999999999874 6899999999998877776421100 0001235677888655
Q ss_pred e-eccccceee----------ccc-eeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccc----
Q 037120 318 G-TLKAQSKIV----------SQE-IHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSA---- 381 (489)
Q Consensus 318 ~-~~~~~~~~~----------~~~-i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 381 (489)
. .+ ...+.. ..+ ...+.+.+++..++..... +...+++.......-.. .|........
T Consensus 243 ~V~~-~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~-g~V~ViD~~~~~~~v~~----~~~~~~~~~i~~g~ 316 (426)
T 3c75_H 243 RVDF-ADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYT-GKIFQADLTAEGATFRA----PIEALTEAERADDW 316 (426)
T ss_dssp EEEC-CTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTT-SEEEEEEECSSCEEECC----CEESSCTTTGGGTE
T ss_pred EEEC-CCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCC-CcEEEEeccCCceEEee----eeeecccccccccc
Confidence 2 22 111110 001 1123457777666555433 22234444322211100 1110000000
Q ss_pred cccCCCcceeecCCcEEEEeec---------CCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceE
Q 037120 382 DQLHLRKPSWLSTNSIYAVGSS---------SDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVT 452 (489)
Q Consensus 382 ~~~~~~~~~~~~~~~~~l~sgs---------~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 452 (489)
.-.....+.+.+++..+.++.. .++.|.++|..+. +.+..+. -.....
T Consensus 317 ~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~----------kvv~~I~-------------vg~~P~ 373 (426)
T 3c75_H 317 RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETG----------ERINKIE-------------LGHEID 373 (426)
T ss_dssp EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTC----------CEEEEEE-------------EEEEEC
T ss_pred ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCC----------eEEEEEE-------------CCCCcC
Confidence 0001123567777777666542 1357999999998 7776665 223588
Q ss_pred EEEeeCCCC-eEEecc-CcceeEEEeccccc
Q 037120 453 ACVTHPLNN-TIVAGT-KNSSLLVVSQKQQC 481 (489)
Q Consensus 453 ~va~~p~~~-~i~sgs-~dg~i~v~~~~~~~ 481 (489)
+++|+|+++ .+++.. .++.|.|+.-+...
T Consensus 374 gia~spDg~~~lyv~n~~s~~VsVID~~t~k 404 (426)
T 3c75_H 374 SINVSQDAEPLLYALSAGTQTLHIYDAATGE 404 (426)
T ss_dssp EEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred eEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence 999999998 777766 59999998765443
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.60 E-value=5.2e-06 Score=80.11 Aligned_cols=113 Identities=12% Similarity=0.121 Sum_probs=76.3
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCC--c
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG--V 235 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg--~ 235 (489)
...|+|++++. ++++...+ +.|++||.... .+..... . ..... ++|++++. .|+.+..++ .
T Consensus 133 P~~la~d~~g~-lyv~d~~~-~~I~~id~~~g-----~~~~~~~------~--~~~~~-ia~~~~g~-~l~~~d~~~~~~ 195 (409)
T 3hrp_A 133 MWGIAAVGNNT-VLAYQRDD-PRVRLISVDDN-----KVTTVHP------G--FKGGK-PAVTKDKQ-RVYSIGWEGTHT 195 (409)
T ss_dssp EEEEEECSTTE-EEEEETTT-TEEEEEETTTT-----EEEEEEE------T--CCBCB-CEECTTSS-EEEEEBSSTTCE
T ss_pred ceEEEEeCCCC-EEEEecCC-CcEEEEECCCC-----EEEEeec------c--CCCCc-eeEecCCC-cEEEEecCCCce
Confidence 67899999875 66666655 89999998322 1111111 1 11233 89999998 788777665 7
Q ss_pred EEEEECCCCCcCceeec----cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCc
Q 037120 236 VNIWDRRVGVLPSLELS----TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGR 289 (489)
Q Consensus 236 i~iwd~~~~~~~~~~~~----~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~ 289 (489)
|.+||...+.. .... ......+.+++++|++..|+++..++.|+.||..++.
T Consensus 196 I~~~d~~~~~~--~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~ 251 (409)
T 3hrp_A 196 VYVYMKASGWA--PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQE 251 (409)
T ss_dssp EEEEEGGGTTC--EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCC
T ss_pred EEEEEcCCCce--eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCC
Confidence 99999876542 1122 1144667899999965566666668899999988654
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.59 E-value=2.6e-06 Score=80.22 Aligned_cols=204 Identities=11% Similarity=0.000 Sum_probs=113.3
Q ss_pred CCceeEEEECCCCcEEEEEec-----CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 96 KPGISALDFDCKGIYLVSATR-----SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~~-----dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
...+.+++|+++|+++++-.. ++.|.+||+.+.+.... +........+... +..+++++++..+
T Consensus 66 ~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~--------~~~~~~~~~~~~~---~~~v~vd~~~g~~ 134 (343)
T 2qe8_A 66 FDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRV--------IYLPPPITLSNSF---VNDLAVDLIHNFV 134 (343)
T ss_dssp CSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEE--------EECCTTTSCTTCC---CCEEEEETTTTEE
T ss_pred eeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEE--------EECChhhcccccc---cceEEEecCCCEE
Confidence 346999999999988777654 57899999987553321 0000000011112 5679999875556
Q ss_pred EEEEe---cCCCEEEEEEeccCCCCCceeeee--c-----eeeee---ec-----CC----cccCeeEEEEecCCCcEEE
Q 037120 171 VACAS---TRSNVVSIYDIGYISDEPVEVLKT--R-----RSVTV---VG-----SD----VQKGLSDLAFSAVNTSRLI 228 (489)
Q Consensus 171 l~s~~---~d~g~i~vwd~~~~~~~~~~~~~~--~-----~~~~~---~~-----~~----h~~~v~~~~~~~~~~~~l~ 228 (489)
+++.. .+ +.|.+||+..+.. ...+.. . ..+.. .+ .+ -...++.|+|+|++. .|+
T Consensus 135 yvtd~~~~~~-~~i~v~d~~~g~~--~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~-~ly 210 (343)
T 2qe8_A 135 YISDPAPDDK-AALIRVDLQTGLA--ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENE-WLY 210 (343)
T ss_dssp EEEECCSGGG-CEEEEEETTTCCE--EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSC-EEE
T ss_pred EEEcCccCCC-CeEEEEECCCCCE--EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCC-EEE
Confidence 66655 45 8999999853311 011100 0 00000 00 00 013478999999998 677
Q ss_pred EEeCCC-cEEEEECC---CCCcC---cee--eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCc
Q 037120 229 ASDTHG-VVNIWDRR---VGVLP---SLE--LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKE 299 (489)
Q Consensus 229 s~s~dg-~i~iwd~~---~~~~~---~~~--~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~ 299 (489)
.+..++ .+..+|.. .+... ... ...++......++++++|.+.++...++.|.+||..+++. ..+.....
T Consensus 211 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~-~~~~~~~~ 289 (343)
T 2qe8_A 211 LSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY-KLLVTDEK 289 (343)
T ss_dssp EEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE-EEEEECGG
T ss_pred EEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE-EEEEECCc
Confidence 666555 55555532 11100 000 0112344567899999998877777799999999855543 22211110
Q ss_pred cCCCCeeEEEeCCCCcce
Q 037120 300 VCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 300 ~~~~~v~~l~~~~~~~~i 317 (489)
. ...++++|.+++..+
T Consensus 290 ~--~~p~~va~~~~g~l~ 305 (343)
T 2qe8_A 290 L--SWTDSFNFGSDGYLY 305 (343)
T ss_dssp G--SCEEEEEECTTSCEE
T ss_pred e--ecCCeeEECCCCcEE
Confidence 1 115666666665443
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.56 E-value=6.8e-06 Score=78.96 Aligned_cols=163 Identities=12% Similarity=0.033 Sum_probs=98.1
Q ss_pred EEEECCCCcEEEEEe----------cCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 101 ALDFDCKGIYLVSAT----------RSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 101 ~~~fs~~g~~la~g~----------~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
.++++|||++|.++. .++.|.++|..+.+...... ......+ ..... -..+.|+|+++.+
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~------v~g~~r~-~~g~~---P~~~~~spDGk~l 191 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIE------LPDAPRF-LVGTY---QWMNALTPDNKNL 191 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEE------ETTCCCC-CBSCC---GGGSEECTTSSEE
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEE------CCCcccc-ccCCC---cceEEEcCCCCEE
Confidence 789999999887776 46799999999865543210 0000000 00112 2238999999866
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce-
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL- 249 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~- 249 (489)
+++...+++.|.+.|+... +++..... . . +....|++...+++.+.||.+.+.|..+++....
T Consensus 192 yV~n~~~~~~VsVID~~t~-----kvv~~I~v-----~----g--~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~ 255 (426)
T 3c75_H 192 LFYQFSPAPAVGVVDLEGK-----TFDRMLDV-----P----D--CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTN 255 (426)
T ss_dssp EEEECSSSCEEEEEETTTT-----EEEEEEEC-----C----S--EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred EEEecCCCCeEEEEECCCC-----eEEEEEEc-----C----C--ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence 6665432389999999332 33333221 1 1 1334566655777788889888888854431100
Q ss_pred -eeccCCCCce-eEEEEeecCCEEEEEeCCCeEEEEEcCCCc
Q 037120 250 -ELSTGSHGTL-NSIQLHAENQIIFAAGKHGSIYLWDLRGGR 289 (489)
Q Consensus 250 -~~~~~h~~~v-~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~ 289 (489)
..+.....++ ..+.+.+++..++.....+.|.+.|+....
T Consensus 256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~ 297 (426)
T 3c75_H 256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEG 297 (426)
T ss_dssp CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSC
T ss_pred eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCc
Confidence 0111111121 245788999888888888999999997643
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.2e-05 Score=74.64 Aligned_cols=182 Identities=8% Similarity=-0.103 Sum_probs=107.0
Q ss_pred eeEEEECCCCcEEEEEec--CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 99 ISALDFDCKGIYLVSATR--SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~--dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
-..++|+|||++|+++.. ++.|.++| .+.+.... . ... -.++.+.|.+...+++.+.
T Consensus 127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~--------~---i~~---------~~~~~~~~~~~~~~~~~~~ 185 (373)
T 2mad_H 127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQ--------L---LSS---------PTCYHIHPGAPSTFYLLCA 185 (373)
T ss_pred ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeE--------E---cCC---------CceEEEEeCCCceEEEEcC
Confidence 457899999999998874 57899999 87543321 0 000 0124556666666777776
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccC--
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTG-- 254 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-- 254 (489)
| |.+.++|. .+... ........+ .+.........+.+++. .++..+.++.+.+.|+.......+..+.-
T Consensus 186 d-g~~~~vd~-~g~~~--~~~~~~~~~----~~~~p~~~~~~~~~~~~-~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~ 256 (373)
T 2mad_H 186 Q-GGLAKTDH-AGGAA--GAGLVGAML----TAAQNLLTQPAQANKSG-RIVWPVYSGKILQADISAAGATNKAPIDALS 256 (373)
T ss_pred C-CCEEEEEC-CCcEE--EEEeccccc----cCCcceeecceeEecCC-EEEEEcCCceEEEEeccCCcceEeeeeeecC
Confidence 6 99999998 43211 111100000 11111123345677766 44444468899999997653222221110
Q ss_pred --------CCCceeEEEEeecCCEEEEEeC----------CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCc
Q 037120 255 --------SHGTLNSIQLHAENQIIFAAGK----------HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLE 315 (489)
Q Consensus 255 --------h~~~v~~~~~~p~~~~l~~~~~----------dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 315 (489)
.......+.++|+++.++++.. .+.|.++|+.+++.+..+... .. ...+.|+|||+
T Consensus 257 ~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g-~~----p~~i~~s~Dg~ 330 (373)
T 2mad_H 257 GGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG-HD----VDAISVAQDGG 330 (373)
T ss_pred CcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC-CC----cCeEEECCCCC
Confidence 1123445789999998888753 357999999998877777532 12 45555555554
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=8e-08 Score=91.62 Aligned_cols=145 Identities=9% Similarity=0.014 Sum_probs=70.7
Q ss_pred CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEe
Q 037120 107 KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDI 186 (489)
Q Consensus 107 ~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~ 186 (489)
++..+++++.||.|+.||..+++..-. ... .. +.+..+..++. ++++++.| |.|..||.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~--------~~~--------~~---~~s~p~~~~g~-~~v~~s~d-g~l~a~d~ 66 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT--------LKE--------DP---VLQVPTHVEEP-AFLPDPND-GSLYTLGS 66 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE--------EEC--------CC---SCCCC-----C-CEEECTTT-CCEEEC--
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE--------ecC--------CC---ceecceEcCCC-EEEEeCCC-CEEEEEEC
Confidence 567899999999999999988554431 110 11 22233344443 66666666 99999998
Q ss_pred ccCCCCCceeeeeceeeeeecCCcc-cCee-EEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEE
Q 037120 187 GYISDEPVEVLKTRRSVTVVGSDVQ-KGLS-DLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQL 264 (489)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~-~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~ 264 (489)
..+... ..+ ..+. ..+. +..+. .+. .+++++.|+.|+.||.++++. +..+..+. ...+
T Consensus 67 ~tG~~~--w~~----------~~~~~~~~~~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~--~w~~~~~~----~~~~ 126 (369)
T 2hz6_A 67 KNNEGL--TKL----------PFTIPELVQASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEK--QQTLSSAF----ADSL 126 (369)
T ss_dssp ---CCS--EEC----------SCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC----------------------
T ss_pred CCCcee--eee----------eccCccccccCceEe-cCC-EEEEEeCCCEEEEEECCCCcE--EEEecCCC----cccc
Confidence 543211 111 0000 0000 00111 234 677788899999999999873 32222222 2455
Q ss_pred eecCCEEEEEeCCCeEEEEEcCCCcccc
Q 037120 265 HAENQIIFAAGKHGSIYLWDLRGGRTSA 292 (489)
Q Consensus 265 ~p~~~~l~~~~~dg~i~lwd~~~~~~~~ 292 (489)
+|++..+++++.|+.|+.||.++|+.+.
T Consensus 127 ~p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 127 SPSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp ------EEEEEEEEEEECCCSSSSSCCC
T ss_pred cccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 6788899999999999999999887543
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1e-05 Score=83.87 Aligned_cols=185 Identities=8% Similarity=-0.040 Sum_probs=113.8
Q ss_pred eEEEECCCCcEEEEEecCCe-------------EEEEeCCCcccccCCCCCCCCCccc-ccccccCCCCCCceeEEEeeC
Q 037120 100 SALDFDCKGIYLVSATRSGC-------------LTVHDFESLYYQCNGTLPGVGLKED-QSKHLLHIPLPQQLDAVRWNL 165 (489)
Q Consensus 100 ~~~~fs~~g~~la~g~~dg~-------------i~vwd~~~~~~~~~~~~~~~g~~~~-~~~~~~h~~~~~~V~~v~~~~ 165 (489)
..++|+ ||+.|+.++.+.. |++|++.+........ -.... +..+ +..+.|+|
T Consensus 178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v----~~~~~~~~~~---------~~~~~~Sp 243 (693)
T 3iuj_A 178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLV----FGAIPAQHHR---------YVGATVTE 243 (693)
T ss_dssp CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEE----ESCSGGGCCS---------EEEEEECT
T ss_pred ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEE----EecCCCCCeE---------EEEEEEcC
Confidence 577899 9999999988743 8999987743211100 00011 1112 67799999
Q ss_pred CCCCEEEEEecC--CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC---CcEEEEE
Q 037120 166 ANQDEVACASTR--SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH---GVVNIWD 240 (489)
Q Consensus 166 ~~~~~l~s~~~d--~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d---g~i~iwd 240 (489)
+++.++++.+.+ .+.|.++|+....... ..+ ..+....... |.+++..+++....+ +.|..+|
T Consensus 244 Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~-~~l----------~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d 311 (693)
T 3iuj_A 244 DDRFLLISAANSTSGNRLYVKDLSQENAPL-LTV----------QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVD 311 (693)
T ss_dssp TSCEEEEEEESSSSCCEEEEEETTSTTCCC-EEE----------ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEE
T ss_pred CCCEEEEEEccCCCCcEEEEEECCCCCCce-EEE----------eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEe
Confidence 998776665522 1589999985432221 111 2233344444 666777355555443 6799999
Q ss_pred CCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-CC--eEEEEEcCCCcccceeec-CCccCCCCeeEEEeCCCCcc
Q 037120 241 RRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HG--SIYLWDLRGGRTSAPFHN-HKEVCHLPLTSLKLASMLEK 316 (489)
Q Consensus 241 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg--~i~lwd~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~ 316 (489)
+.++....++.+..|...+. .|+++++.|+.... ++ .|++||+..+. ...+.. .... +..+.+++++..
T Consensus 312 ~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l~~p~~~~----~~~~~~~~d~~~ 384 (693)
T 3iuj_A 312 AANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREVALPGLGS----VSGFNGKHDDPA 384 (693)
T ss_dssp TTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEECCSSSSE----EEECCCCTTCSC
T ss_pred CCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEeecCCCce----EEeeecCCCCCE
Confidence 98875322334455666555 89999998888766 54 68999987543 333332 2233 667777777765
Q ss_pred e
Q 037120 317 I 317 (489)
Q Consensus 317 i 317 (489)
+
T Consensus 385 l 385 (693)
T 3iuj_A 385 L 385 (693)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=4.7e-06 Score=78.68 Aligned_cols=256 Identities=9% Similarity=-0.012 Sum_probs=136.4
Q ss_pred EEEECCCCcEEEEEe----------cCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 101 ALDFDCKGIYLVSAT----------RSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 101 ~~~fs~~g~~la~g~----------~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
.++|+|||+++.++. .++.|.+||..+.+...... ......+. ....... ++++|+++.+
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~------v~~~~~~~-~g~~P~~---ia~SpDGk~l 138 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIE------LPDAPRFS-VGPRVHI---IGNCASSACL 138 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEE------ETTSCSCC-BSCCTTS---EEECTTSSCE
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEE------CCCccccc-cCCCcce---EEEcCCCCEE
Confidence 689999999888886 37899999999966554210 00000000 0012223 9999999877
Q ss_pred EEEEecCCCEEEE--EEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCC-----
Q 037120 171 VACASTRSNVVSI--YDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRV----- 243 (489)
Q Consensus 171 l~s~~~d~g~i~v--wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~----- 243 (489)
+++...+++.|.+ +|+.. +.... ..+ . ..+.|++...+++.+.||.+.+.|+.+
T Consensus 139 yVan~~~~~~v~V~~iD~~t--------v~~i~-----v~~---~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 139 LFFLFGSSAAAGLSVPGASD--------DQLTK-----SAS---C---FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp EEEECSSSCEEEEEETTTEE--------EEEEE-----CSS---C---CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred EEEccCCCCeEEEEEEchhh--------ceEEE-----CCC---c---eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 7765433368888 88832 11111 011 1 123466665677777899988889876
Q ss_pred CCcCce--eeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc--cceeecCCccCCCCeeEEEeCCCCcceee
Q 037120 244 GVLPSL--ELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT--SAPFHNHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 244 ~~~~~~--~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
++.... ..+.-...+. . .+++..++..+. +.|.+.|+.+... +..+...... ..
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~---------------~~-- 257 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESG---------------RK-- 257 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTH---------------HH--
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccc---------------cc--
Confidence 221000 0011112233 3 666777666666 9999999865321 2222110000 00
Q ss_pred ccccceeeccceeEEEeCCCCCeEEEEEe-c-C------CceEEEEeeccceeeecCCCCCCcCCCCccccccCCCccee
Q 037120 320 LKAQSKIVSQEIHSIDLDPSCSYQLAFHL-D-D------GWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSW 391 (489)
Q Consensus 320 ~~~~~~~~~~~i~~~~~~p~~~~~~~~~~-~-~------~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (489)
. ..........+.++|++.+++.... . + ....+++..+..+...... . .....+.+
T Consensus 258 --~-~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v------g-------~~p~gi~~ 321 (368)
T 1mda_H 258 --A-DNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN------G-------HDSDAIIA 321 (368)
T ss_dssp --H-TTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE------E-------EEECEEEE
T ss_pred --c-cccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC------C-------CCcceEEE
Confidence 0 0000001111345566655554332 1 1 1223555444433221100 0 01234677
Q ss_pred ecCCcEEEEeec-CCCcEEEEeccCCCCCCeeeccCcccchhh
Q 037120 392 LSTNSIYAVGSS-SDHGIHLLDFFPGSSSPSHVDYNEDIESLS 433 (489)
Q Consensus 392 ~~~~~~~l~sgs-~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 433 (489)
.+++..++++.. .++.|.|+|+.+. +.+..+.
T Consensus 322 s~Dg~~l~va~~~~~~~VsVID~~t~----------kvv~~I~ 354 (368)
T 1mda_H 322 AQDGASDNYANSAGTEVLDIYDAASD----------QDQSSVE 354 (368)
T ss_dssp CCSSSCEEEEEETTTTEEEEEESSSC----------EEEEECC
T ss_pred CCCCCEEEEEccCCCCeEEEEECCCC----------cEEEEEE
Confidence 788777777777 6999999999999 7776654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1.9e-05 Score=69.69 Aligned_cols=158 Identities=15% Similarity=0.095 Sum_probs=97.1
Q ss_pred eeEEEECCCCcEEEEEecCC--eEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 99 ISALDFDCKGIYLVSATRSG--CLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg--~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
...+.|+ ++.++.+.+.+| .|+++|+.+++..... .+. ...+ --.++.. +..+.+....
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~------------~l~---~~~F-geGit~~--g~~ly~ltw~ 105 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQI------------ELG---KRYF-GEGISDW--KDKIVGLTWK 105 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEE------------ECC---TTCC-EEEEEEE--TTEEEEEESS
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEE------------ecC---Cccc-eeEEEEe--CCEEEEEEee
Confidence 6888998 778888888876 9999999996655431 000 0101 1113443 4446666655
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccC--
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTG-- 254 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-- 254 (489)
+ +.+.+||.... +.+..... .+ ....+++++. .|+.+..++.|.++|..+.+ .+..+.-
T Consensus 106 ~-~~v~v~D~~t~-----~~~~ti~~-----~~-----eG~glt~dg~-~L~~SdGs~~i~~iDp~T~~--v~~~I~V~~ 166 (262)
T 3nol_A 106 N-GLGFVWNIRNL-----RQVRSFNY-----DG-----EGWGLTHNDQ-YLIMSDGTPVLRFLDPESLT--PVRTITVTA 166 (262)
T ss_dssp S-SEEEEEETTTC-----CEEEEEEC-----SS-----CCCCEEECSS-CEEECCSSSEEEEECTTTCS--EEEEEECEE
T ss_pred C-CEEEEEECccC-----cEEEEEEC-----CC-----CceEEecCCC-EEEEECCCCeEEEEcCCCCe--EEEEEEecc
Confidence 5 99999999332 33322221 11 1123345777 55555557889999999866 3333221
Q ss_pred CC---CceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcccceeec
Q 037120 255 SH---GTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 255 h~---~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~ 296 (489)
.. ..++.+.|. +|. +++... ++.|.+.|.++++.+..+..
T Consensus 167 ~g~~~~~lNELe~~-~G~-lyan~w~~~~I~vIDp~tG~V~~~Id~ 210 (262)
T 3nol_A 167 HGEELPELNELEWV-DGE-IFANVWQTNKIVRIDPETGKVTGIIDL 210 (262)
T ss_dssp TTEECCCEEEEEEE-TTE-EEEEETTSSEEEEECTTTCBEEEEEEC
T ss_pred CCccccccceeEEE-CCE-EEEEEccCCeEEEEECCCCcEEEEEEC
Confidence 11 335567776 665 555554 88999999999998766653
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00022 Score=67.96 Aligned_cols=270 Identities=11% Similarity=0.022 Sum_probs=137.8
Q ss_pred Eee--CCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeece--eeeeecCCcccCeeEEEEecCCCcEEEEEeCC----
Q 037120 162 RWN--LANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRR--SVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH---- 233 (489)
Q Consensus 162 ~~~--~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d---- 233 (489)
.++ ++...+++.+..+ +.|.|+|+......+ ++.+... .... -.+ ...-..+...|++ +++++..+
T Consensus 88 ~~~~~~~r~~l~v~~l~s-~~I~viD~~t~p~~p-~~~k~ie~~~~~~-~~g-~s~Ph~~~~~pdG--i~Vs~~g~~~g~ 161 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRS-SRIYIIDTKPNPREP-KIIKVIEPEEVKK-VSG-YSRLHTVHCGPDA--IYISALGNEEGE 161 (462)
T ss_dssp TCCTTCCSCEEEEEBTTT-CCEEEEECCSCTTSC-EEEEEECHHHHHH-HHC-EEEEEEEEECSSC--EEEEEEEETTSC
T ss_pred ccCCCccCCEEEEccCCC-CeEEEEECCCCCCCc-eeeeeechhhccc-ccC-CCcccceeECCCe--EEEEcCCCcCCC
Confidence 446 7777677767666 999999995443332 2222110 0000 001 0123457788988 56666655
Q ss_pred --CcEEEEECCCCCcCceeeccC--CC-CceeEEEEeecCCEEEEEe-------------------CCCeEEEEEcCCCc
Q 037120 234 --GVVNIWDRRVGVLPSLELSTG--SH-GTLNSIQLHAENQIIFAAG-------------------KHGSIYLWDLRGGR 289 (489)
Q Consensus 234 --g~i~iwd~~~~~~~~~~~~~~--h~-~~v~~~~~~p~~~~l~~~~-------------------~dg~i~lwd~~~~~ 289 (489)
|.|.++|..+.+ ++..... .. ..-..+-|+|+++.+++.. .+.+|.+||+.+++
T Consensus 162 ~~g~v~vlD~~T~~--v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k 239 (462)
T 2ece_A 162 GPGGILMLDHYSFE--PLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRK 239 (462)
T ss_dssp SCCEEEEECTTTCC--EEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTE
T ss_pred CCCeEEEEECCCCe--EEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCc
Confidence 789999999877 4544431 11 1233588899999888874 37899999999987
Q ss_pred ccceeecCCccCCCCeeEEEe--CCCCcceeeccc-cceeeccceeEEEeCCCCCeEEEEEecCCce--EEEEeecccee
Q 037120 290 TSAPFHNHKEVCHLPLTSLKL--ASMLEKIGTLKA-QSKIVSQEIHSIDLDPSCSYQLAFHLDDGWS--GVLDVYNSRVS 364 (489)
Q Consensus 290 ~~~~~~~~~~~~~~~v~~l~~--~~~~~~i~~~~~-~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~--~~~~~~~~~~~ 364 (489)
.+.++...... .....+.| +|++++..-... ..+.....|..+.+. ++.|. .++++......
T Consensus 240 ~~~tI~vg~~g--~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d-----------~g~~~~~~vIdi~~~~v~ 306 (462)
T 2ece_A 240 RIHSLTLGEEN--RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYE-----------DGKWNAEKVIEIPAEPLE 306 (462)
T ss_dssp EEEEEESCTTE--EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEE-----------TTEEEEEEEEEECCEECC
T ss_pred EeeEEecCCCC--CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEec-----------CCceeEEEEEeCCCcccc
Confidence 77777642111 11344544 777765432110 000011222222221 11132 23332211111
Q ss_pred eecCCC---CCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhccc
Q 037120 365 HVHCPP---PAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKE 441 (489)
Q Consensus 365 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (489)
. .++ ..|.... .....+..+++|..+.++.-..+.|.++|+.... .+ +.+..+...+.....
T Consensus 307 ~--~lp~~~~~f~~~~------~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~-~~------~lv~~I~tGG~~~~~ 371 (462)
T 2ece_A 307 G--NLPEILKPFKAVP------PLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPF-KP------VLTGKVKLGGIFHRA 371 (462)
T ss_dssp S--SCCGGGGGGTEEC------CCCCCEEECTTSCEEEEEETTTTEEEEEECSSTT-SC------EEEEEEECBTTTTCB
T ss_pred c--cccccccccccCC------CceeEEEECCCCCEEEEEeCCCCEEEEEEecCCC-Cc------EEEEEEEeCCeeccc
Confidence 1 000 0000000 0123356778888888888888999999996330 11 122222100000000
Q ss_pred CCc--ccCCCceEEEEeeCCCCeEEecc
Q 037120 442 NRF--VPLSEGVTACVTHPLNNTIVAGT 467 (489)
Q Consensus 442 ~~~--~~h~~~V~~va~~p~~~~i~sgs 467 (489)
... ....+.-..++++|+++++.++.
T Consensus 372 ~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 372 DHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred cccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 000 00112357789999999777776
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.9e-05 Score=69.25 Aligned_cols=159 Identities=12% Similarity=0.029 Sum_probs=97.8
Q ss_pred eeEEEECCCCcEEEEEec--CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 99 ISALDFDCKGIYLVSATR--SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~--dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
...++|+++|.++++.+. ++.|+++|..+++..... ....+ .. ...+++. +..+.++...
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i------------~l~~~-~f---geGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIH------------KMDDS-YF---GEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEE------------ECCTT-CC---EEEEEEE--TTEEEEEETT
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEE------------ecCCC-cc---eEEEEEe--CCEEEEEEec
Confidence 678899999866666554 689999999986655421 00001 01 2235555 3345566555
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc-C-
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST-G- 254 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~- 254 (489)
+ +.+.++|... .+++.... .+ ... ...++++++ .++.+..++.|.++|..+.+ ....+. +
T Consensus 85 ~-~~v~viD~~t-----~~v~~~i~------~g-~~~--g~glt~Dg~-~l~vs~gs~~l~viD~~t~~--v~~~I~Vg~ 146 (266)
T 2iwa_A 85 K-NIGFIYDRRT-----LSNIKNFT------HQ-MKD--GWGLATDGK-ILYGSDGTSILYEIDPHTFK--LIKKHNVKY 146 (266)
T ss_dssp C-SEEEEEETTT-----TEEEEEEE------CC-SSS--CCEEEECSS-SEEEECSSSEEEEECTTTCC--EEEEEECEE
T ss_pred C-CEEEEEECCC-----CcEEEEEE------CC-CCC--eEEEEECCC-EEEEECCCCeEEEEECCCCc--EEEEEEECC
Confidence 5 9999999832 23333222 11 011 133566888 45555578999999998865 332222 1
Q ss_pred CC---CceeEEEEeecCCEEEEEe-CCCeEEEEEcCCCcccceee
Q 037120 255 SH---GTLNSIQLHAENQIIFAAG-KHGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 255 h~---~~v~~~~~~p~~~~l~~~~-~dg~i~lwd~~~~~~~~~~~ 295 (489)
+. ..++.+.|. ++ .+++.. .++.|.+.|..+++.+..+.
T Consensus 147 ~~~p~~~~nele~~-dg-~lyvn~~~~~~V~vID~~tg~V~~~I~ 189 (266)
T 2iwa_A 147 NGHRVIRLNELEYI-NG-EVWANIWQTDCIARISAKDGTLLGWIL 189 (266)
T ss_dssp TTEECCCEEEEEEE-TT-EEEEEETTSSEEEEEETTTCCEEEEEE
T ss_pred CCcccccceeEEEE-CC-EEEEecCCCCeEEEEECCCCcEEEEEE
Confidence 11 236678887 66 455555 48899999999998766665
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.2e-05 Score=74.28 Aligned_cols=184 Identities=9% Similarity=0.025 Sum_probs=105.8
Q ss_pred CCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE--
Q 037120 96 KPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC-- 173 (489)
Q Consensus 96 ~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s-- 173 (489)
...+..++++++|+++++...++.|.+|+.+. .... +..... ...... +..+++.+++. ++++
T Consensus 85 ~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~g-~~~~---------~~~~~~-~~~~~~---~~~i~~d~dG~-l~~td~ 149 (305)
T 3dr2_A 85 TAFTNGNAVDAQQRLVHCEHGRRAITRSDADG-QAHL---------LVGRYA-GKRLNS---PNDLIVARDGA-IWFTDP 149 (305)
T ss_dssp CSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEE---------EECEET-TEECSC---CCCEEECTTSC-EEEECC
T ss_pred CCccceeeECCCCCEEEEECCCCEEEEECCCC-CEEE---------EEeccC-CCccCC---CCCEEECCCCC-EEEeCc
Confidence 34588999999999777666678899998763 2111 000000 000112 56699999985 6665
Q ss_pred --EecC------------CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC------
Q 037120 174 --ASTR------------SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH------ 233 (489)
Q Consensus 174 --~~~d------------~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d------ 233 (489)
+..+ .+.|..||...+ +. ..+. .....+.++|+|++. .|+.+...
T Consensus 150 ~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g--~~-~~~~-----------~~~~p~gl~~spdg~-~lyv~~~~~~~~~~ 214 (305)
T 3dr2_A 150 PFGLRKPSQGCPADPELAHHSVYRLPPDGS--PL-QRMA-----------DLDHPNGLAFSPDEQ-TLYVSQTPEQGHGS 214 (305)
T ss_dssp SGGGSCGGGSCCCCCSSSCEEEEEECSSSC--CC-EEEE-----------EESSEEEEEECTTSS-EEEEEECCC---CC
T ss_pred CCCccccccccccccccCCCeEEEEcCCCC--cE-EEEe-----------cCCCCcceEEcCCCC-EEEEEecCCcCCCC
Confidence 3211 145666665222 11 1111 112567899999998 66666544
Q ss_pred CcEEEEECCCCCcCceeec-cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCC
Q 037120 234 GVVNIWDRRVGVLPSLELS-TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLAS 312 (489)
Q Consensus 234 g~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 312 (489)
+.|.+||+..+.....+.+ .........++++++|++ .++..+ .|.+||. .++.+..+.... . +.+++|.+
T Consensus 215 ~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~-~g~~~~~~~~~~-~----~~~~~f~~ 286 (305)
T 3dr2_A 215 VEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL-WSSSGT-GVCVFDS-DGQLLGHIPTPG-T----ASNCTFDQ 286 (305)
T ss_dssp CEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE-EECCSS-EEEEECT-TSCEEEEEECSS-C----CCEEEECT
T ss_pred CEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE-EEecCC-cEEEECC-CCCEEEEEECCC-c----eeEEEEeC
Confidence 7899999875431101111 112344567899999994 444444 4999998 455555554332 3 56666666
Q ss_pred CCcce
Q 037120 313 MLEKI 317 (489)
Q Consensus 313 ~~~~i 317 (489)
+++.+
T Consensus 287 d~~~L 291 (305)
T 3dr2_A 287 AQQRL 291 (305)
T ss_dssp TSCEE
T ss_pred CCCEE
Confidence 55433
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=3.1e-05 Score=73.05 Aligned_cols=258 Identities=8% Similarity=-0.095 Sum_probs=137.0
Q ss_pred EEEEEecCCC----EEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe----------CCCc
Q 037120 170 EVACASTRSN----VVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD----------THGV 235 (489)
Q Consensus 170 ~l~s~~~d~g----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s----------~dg~ 235 (489)
++++...+ + +|.++|... .+++.... .+.. + .+.++|+++ .++.+. .++.
T Consensus 34 ~yV~~~~~-~~~~d~vsvID~~t-----~~v~~~i~------vG~~-P--~i~~spDg~-~lyVan~~~~r~~~G~~~~~ 97 (368)
T 1mda_H 34 SHITLPAY-FAGTTENWVSCAGC-----GVTLGHSL------GAFL-S--LAVAGHSGS-DFALASTSFARSAKGKRTDY 97 (368)
T ss_dssp EEEEECTT-TCSSEEEEEEETTT-----TEEEEEEE------ECTT-C--EEEECTTSS-CEEEEEEEETTTTSSSEEEE
T ss_pred EEEECCcc-CCccceEEEEECCC-----CeEEEEEe------CCCC-C--ceEECCCCC-EEEEEcccccccccCCCCCE
Confidence 44444433 5 888999832 24444333 2222 3 699999999 555554 4789
Q ss_pred EEEEECCCCCcCceeeccCC-------CCceeEEEEeecCCEEEEEeC--CCeEEE--EEcCCCcccceeecCCccC---
Q 037120 236 VNIWDRRVGVLPSLELSTGS-------HGTLNSIQLHAENQIIFAAGK--HGSIYL--WDLRGGRTSAPFHNHKEVC--- 301 (489)
Q Consensus 236 i~iwd~~~~~~~~~~~~~~h-------~~~v~~~~~~p~~~~l~~~~~--dg~i~l--wd~~~~~~~~~~~~~~~~~--- 301 (489)
|.+||+.+.+ .+..+... ......++++|||++++++.. +..|.+ +|+.+ +..+.......
T Consensus 98 VsviD~~T~~--vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p 172 (368)
T 1mda_H 98 VEVFDPVTFL--PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHP 172 (368)
T ss_dssp EEEECTTTCC--EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEE
T ss_pred EEEEECCCCC--EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEcc
Confidence 9999999977 44443211 123457999999999999875 467888 99876 23332100000
Q ss_pred CCCeeEEEeCCCCccee-eccc----ccee----------eccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeee
Q 037120 302 HLPLTSLKLASMLEKIG-TLKA----QSKI----------VSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHV 366 (489)
Q Consensus 302 ~~~v~~l~~~~~~~~i~-~~~~----~~~~----------~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 366 (489)
...-.-+.++++++.+. .+.. ..+. ...+. . .+++..++..+. +. ..+++........+
T Consensus 173 ~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~-V~viD~~~~~~~v~ 246 (368)
T 1mda_H 173 GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SS-ILQGDIPAAGATMK 246 (368)
T ss_dssp EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SC-CEEEECCSSCCEEE
T ss_pred CCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CE-EEEEECCCCcceEE
Confidence 00011244555554432 1111 0000 01111 1 344444333333 21 12333322111000
Q ss_pred cCCCCCCcCCCCc----cccccCCCcceeecCCcEEEEeec---C-----CCcEEEEeccCCCCCCeeeccCcccchhhH
Q 037120 367 HCPPPAWLSDSNN----SADQLHLRKPSWLSTNSIYAVGSS---S-----DHGIHLLDFFPGSSSPSHVDYNEDIESLSE 434 (489)
Q Consensus 367 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~sgs---~-----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 434 (489)
. .|...... ...-...+...+.+++..+.++.. . ++.+.++|+.+. +.+..+.
T Consensus 247 ~----~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~----------~vv~~i~- 311 (368)
T 1mda_H 247 A----AIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVG----------QTSGPIS- 311 (368)
T ss_dssp C----CCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSC----------CEEECCE-
T ss_pred E----EEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCC----------eEEEEEE-
Confidence 0 01110000 000011122567888877777643 2 235669999998 7776665
Q ss_pred hhhhcccCCcccCCCceEEEEeeCCCC-eEEecc-CcceeEEEeccccc
Q 037120 435 RTKLKKENRFVPLSEGVTACVTHPLNN-TIVAGT-KNSSLLVVSQKQQC 481 (489)
Q Consensus 435 ~~~~~~~~~~~~h~~~V~~va~~p~~~-~i~sgs-~dg~i~v~~~~~~~ 481 (489)
-.....+++|+|+++ .+++.. .++.|.|+.-+...
T Consensus 312 ------------vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~k 348 (368)
T 1mda_H 312 ------------NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQ 348 (368)
T ss_dssp ------------EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCE
T ss_pred ------------CCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCc
Confidence 223589999999997 566766 59999998765543
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00062 Score=61.19 Aligned_cols=158 Identities=8% Similarity=-0.017 Sum_probs=97.4
Q ss_pred ceeEEEECCCCcE-EEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 98 GISALDFDCKGIY-LVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 98 ~V~~~~fs~~g~~-la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
.+.+++|++++.. +++-..++.|.+++........ .... .... ...+++.+++..++++-..
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~--------~~~~------~~~~---p~~ia~d~~~~~lyv~d~~ 99 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT--------IIRQ------DLGS---PEGIALDHLGRTIFWTDSQ 99 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE--------EECT------TCCC---EEEEEEETTTTEEEEEETT
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE--------EEEC------CCCC---ccEEEEEecCCeEEEEECC
Confidence 4678999996554 4555557899999987632111 0000 0112 6779999976656666665
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeC--CCcEEEEECCCCCcCceeeccC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT--HGVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~ 254 (489)
. +.|.++++.... ...+. .........+++.|++..++++... .+.|..+++.......+ ...
T Consensus 100 ~-~~I~~~~~~g~~---~~~~~---------~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~--~~~ 164 (267)
T 1npe_A 100 L-DRIEVAKMDGTQ---RRVLF---------DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRIL--AQD 164 (267)
T ss_dssp T-TEEEEEETTSCS---CEEEE---------CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEE--ECT
T ss_pred C-CEEEEEEcCCCC---EEEEE---------ECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcEEE--EEC
Confidence 5 899999984211 11111 1111356889999976624444433 46888888764331111 112
Q ss_pred CCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCC
Q 037120 255 SHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRG 287 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~ 287 (489)
.-.....++++|++..|+.+.. .+.|.++|+..
T Consensus 165 ~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g 198 (267)
T 1npe_A 165 NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ 198 (267)
T ss_dssp TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC
Confidence 2245688999998887777765 78899998864
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.29 E-value=2.2e-05 Score=77.44 Aligned_cols=218 Identities=9% Similarity=-0.057 Sum_probs=122.3
Q ss_pred CCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEE-e-cCCCcEEEEEe------------
Q 037120 166 ANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAF-S-AVNTSRLIASD------------ 231 (489)
Q Consensus 166 ~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-~-~~~~~~l~s~s------------ 231 (489)
|+..++++...+ +.|.+.|+... ++.+... .........+++ . |++. +++.++
T Consensus 100 DG~~lfVnd~~~-~rVavIdl~t~-----~~~~ii~------ip~g~~phg~~~~~~p~~~-~v~~~~~~~~p~~~dg~~ 166 (595)
T 1fwx_A 100 DGRFLFMNDKAN-TRVARVRCDVM-----KCDAILE------IPNAKGIHGLRPQKWPRSN-YVFCNGEDETPLVNDGTN 166 (595)
T ss_dssp EEEEEEEEETTT-TEEEEEETTTT-----EEEEEEE------CSSCCSEEEEEECCSSBCS-EEEEEECSCEESSCSSSS
T ss_pred CCCEEEEEcCCC-CEEEEEECCCc-----eEeeEEe------CCCCCCCcceeeeecCCCc-EEEEecccccccCCCCcc
Confidence 777677766655 89999999433 2222111 111235778887 4 8898 666663
Q ss_pred ------CCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCC---------------CeEEEEEcCCCcc
Q 037120 232 ------THGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKH---------------GSIYLWDLRGGRT 290 (489)
Q Consensus 232 ------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~d---------------g~i~lwd~~~~~~ 290 (489)
.++.+.+.|..+.+ ......- .+...-++++|+|+++++++.+ ..|.+.|......
T Consensus 167 l~~~~~~~~~vtvID~~t~~--v~~qI~V-gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~ 243 (595)
T 1fwx_A 167 MEDVANYVNVFTAVDADKWE--VAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEK 243 (595)
T ss_dssp TTCGGGEEEEEEEEETTTTE--EEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHH
T ss_pred cccccccCceEEEEECCCCe--EEEEEEe-CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeE
Confidence 34689999999754 2222211 1134568899999999999874 3577777654322
Q ss_pred cceee-cCCccCCCCeeEEEeCCC-Ccc-eeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccce----
Q 037120 291 SAPFH-NHKEVCHLPLTSLKLASM-LEK-IGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRV---- 363 (489)
Q Consensus 291 ~~~~~-~~~~~~~~~v~~l~~~~~-~~~-i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~---- 363 (489)
... +.... ...|.-+..... +.. +.. .........+.++|||+++++......-..+++..+...
T Consensus 244 --~v~~Gk~~~-i~~V~VID~~~~~~~~~~~~-----Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~ 315 (595)
T 1fwx_A 244 --AIAAGDYQE-LNGVKVVDGRKEASSLFTRY-----IPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYE 315 (595)
T ss_dssp --HHHHTCSEE-ETTEEEEECSGGGCCSSEEE-----EEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHS
T ss_pred --eccCCCeeE-ECcEEEEeCcccCCceeEEE-----EecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccc
Confidence 000 00000 000222221110 111 111 112345678999999999998877766545555543210
Q ss_pred --eeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccC
Q 037120 364 --SHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFP 415 (489)
Q Consensus 364 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~ 415 (489)
.....+....... ...+..+|.++| ...++.--|+.|-+||+..
T Consensus 316 ~l~~~~~v~~~v~vG-------~gP~h~aF~~dG-~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 316 NADPRSAVVAEPELG-------LGPLHTAFDGRG-NAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp CCCGGGGEEECCBCC-------SCEEEEEECTTS-EEEEEETTTTEEEEEEHHH
T ss_pred ccCcccceEEEcCCC-------CCcceEEECCCC-eEEEEEecCCcEEEEEhhH
Confidence 0000000000011 234667889998 6667778999999999976
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.28 E-value=4.7e-05 Score=72.52 Aligned_cols=162 Identities=12% Similarity=0.144 Sum_probs=96.6
Q ss_pred eEEEECCCCcEEEEEecC------CeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 100 SALDFDCKGIYLVSATRS------GCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 100 ~~~~fs~~g~~la~g~~d------g~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
..+...|+| +++++..+ |.|.++|..+.+....- ... ..-..-.++ +.|+|++. .+++
T Consensus 141 h~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~--------~~~---~~~~~~~Yd---~~~~p~~~-~mvs 204 (462)
T 2ece_A 141 HTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKW--------EID---RGDQYLAYD---FWWNLPNE-VLVS 204 (462)
T ss_dssp EEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEEC--------CSB---CTTCCCCCC---EEEETTTT-EEEE
T ss_pred cceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEE--------ccC---CCCccccce---EEECCCCC-EEEE
Confidence 345678999 66655555 78999999986655431 100 001112233 88899986 5555
Q ss_pred Ee------------------cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEE--ecCCCcEEEEEe--
Q 037120 174 AS------------------TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAF--SAVNTSRLIASD-- 231 (489)
Q Consensus 174 ~~------------------~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~~~~~l~s~s-- 231 (489)
.. ..+.+|.+||+... +.+.... +.........+.| +|+++..++++-
T Consensus 205 S~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-----k~~~tI~-----vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~ 274 (462)
T 2ece_A 205 SEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-----KRIHSLT-----LGEENRMALELRPLHDPTKLMGFINMVVS 274 (462)
T ss_dssp CBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-----EEEEEEE-----SCTTEEEEEEEEECSSTTCCEEEEEEEEE
T ss_pred ccCcCccccccccchhhhhhccCCEEEEEECCCC-----cEeeEEe-----cCCCCCccceeEeeECCCCCEEEEEEeee
Confidence 53 12379999999432 2222221 1101123445656 999994455555
Q ss_pred ---CCCcEEEEECCCCCcCceeec--cC----------------CCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCC
Q 037120 232 ---THGVVNIWDRRVGVLPSLELS--TG----------------SHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRG 287 (489)
Q Consensus 232 ---~dg~i~iwd~~~~~~~~~~~~--~~----------------h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~ 287 (489)
.+++|.+|....++....+.+ .. -......|.++|||++|+++.. .+.|.+||+..
T Consensus 275 ~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 275 LKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp TTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred ccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 677887765543321111110 00 0234678999999999999977 88999999863
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.27 E-value=7.5e-05 Score=65.86 Aligned_cols=156 Identities=15% Similarity=0.068 Sum_probs=97.9
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
...+.|+ ++.++.+.+.+|.|+++|+++++.... . +. ...+ --.+++ ++..+.+....+
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~--------~-----l~---~~~F-geGit~--~g~~Ly~ltw~~- 115 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWM--------E-----RL---GNIF-AEGLAS--DGERLYQLTWTE- 115 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEE--------E-----EC---TTCC-EEEEEE--CSSCEEEEESSS-
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeE--------E-----CC---CCcc-eeEEEE--eCCEEEEEEccC-
Confidence 6788887 467888888899999999998554441 1 10 0101 112444 344566666666
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc--CCC
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST--GSH 256 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~h~ 256 (489)
+.+.+||.... +.+..... .+ .=..++ ++++ .|+.+..++.|.++|..+.+ .+..+. .+.
T Consensus 116 ~~v~V~D~~Tl-----~~~~ti~~-----~~---eGwGLt--~Dg~-~L~vSdGs~~l~~iDp~T~~--v~~~I~V~~~g 177 (268)
T 3nok_A 116 GLLFTWSGMPP-----QRERTTRY-----SG---EGWGLC--YWNG-KLVRSDGGTMLTFHEPDGFA--LVGAVQVKLRG 177 (268)
T ss_dssp CEEEEEETTTT-----EEEEEEEC-----SS---CCCCEE--EETT-EEEEECSSSEEEEECTTTCC--EEEEEECEETT
T ss_pred CEEEEEECCcC-----cEEEEEeC-----CC---ceeEEe--cCCC-EEEEECCCCEEEEEcCCCCe--EEEEEEeCCCC
Confidence 99999999322 33333221 11 113343 5677 66666678999999999876 333322 111
Q ss_pred ---CceeEEEEeecCCEEEEEe-CCCeEEEEEcCCCcccceee
Q 037120 257 ---GTLNSIQLHAENQIIFAAG-KHGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 257 ---~~v~~~~~~p~~~~l~~~~-~dg~i~lwd~~~~~~~~~~~ 295 (489)
..++.+.|. +|. +++.. .++.|.+.|.++++.+..+.
T Consensus 178 ~~v~~lNeLe~~-dG~-lyanvw~s~~I~vIDp~TG~V~~~Id 218 (268)
T 3nok_A 178 QPVELINELECA-NGV-IYANIWHSSDVLEIDPATGTVVGVID 218 (268)
T ss_dssp EECCCEEEEEEE-TTE-EEEEETTCSEEEEECTTTCBEEEEEE
T ss_pred cccccccccEEe-CCE-EEEEECCCCeEEEEeCCCCcEEEEEE
Confidence 235677776 665 55555 48899999999998766665
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00013 Score=67.72 Aligned_cols=168 Identities=7% Similarity=-0.012 Sum_probs=94.6
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
+.++.+.++|.+++ ++.+ |..+|. +....... .... .. ....... + ..+..++.+
T Consensus 62 ~~~~~~~~~g~l~v-~t~~--l~~~d~-~g~~~~~~--------~~~~------~~---~~~~~~~-~--~~l~v~t~~- 116 (330)
T 3hxj_A 62 ECRPSIGKDGTIYF-GSDK--VYAINP-DGTEKWRF--------DTKK------AI---VSDFTIF-E--DILYVTSMD- 116 (330)
T ss_dssp EECCEETTTTEECC-SSCE--EEEECC-CGGGGGGS--------CC--------------CCEEEE-T--TEEEEECTT-
T ss_pred ccceEEecCCcEEE-ecCc--EEEECC-CCcEEEEE--------ECCC------Cc---ccCceEE-C--CEEEEEecC-
Confidence 57778888886544 4444 888886 32222110 0000 00 1122333 3 355666666
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCc
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGT 258 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~ 258 (489)
+.|..+|.. + . .... . ..+...+.++...+++. ++.++.++.|..+|.. ++ ...........
T Consensus 117 ~~l~~~d~~-g--~--~~~~----~----~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~--~~~~~~~~~~~ 178 (330)
T 3hxj_A 117 GHLYAINTD-G--T--EKWR----F----KTKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-GT--EKWRFKTNDAI 178 (330)
T ss_dssp SEEEEECTT-S--C--EEEE----E----ECSSCCCSCCEECTTSC--EEEECTTSEEEEECTT-SC--EEEEEECSSCC
T ss_pred CEEEEEcCC-C--C--EEEE----E----cCCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-CC--EeEEEecCCCc
Confidence 899999873 2 1 1111 1 11223456666666665 6667788999999988 55 22223333456
Q ss_pred eeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 259 LNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 259 v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
+.++.+.+++... +++ +.|..|| .+++.+..+...... +.++...++|...
T Consensus 179 ~~~~~~d~~g~l~-v~t--~~l~~~d-~~g~~~~~~~~~~~~----~~~~~~~~~g~l~ 229 (330)
T 3hxj_A 179 TSAASIGKDGTIY-FGS--DKVYAIN-PDGTEKWNFYAGYWT----VTRPAISEDGTIY 229 (330)
T ss_dssp CSCCEECTTCCEE-EES--SSEEEEC-TTSCEEEEECCSSCC----CSCCEECTTSCEE
T ss_pred eeeeEEcCCCEEE-EEe--CEEEEEC-CCCcEEEEEccCCcc----eeceEECCCCeEE
Confidence 7778887787754 444 8899999 676665554433333 6666677666544
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00023 Score=62.22 Aligned_cols=157 Identities=14% Similarity=0.055 Sum_probs=95.1
Q ss_pred eeEEEECCCCcEEEEEecCC--eEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 99 ISALDFDCKGIYLVSATRSG--CLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg--~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
+..+.|+. +.++.+.+.+| .|+++|+.+++..... .+.. ..++ -.++.. +..+......
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~------------~l~~---~~fg-eGi~~~--~~~ly~ltw~ 83 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA------------EVPP---PYFG-AGIVAW--RDRLIQLTWR 83 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE------------ECCT---TCCE-EEEEEE--TTEEEEEESS
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE------------eCCC---Ccce-eEEEEe--CCEEEEEEee
Confidence 77889987 67777777754 8999999996655421 0000 0011 113443 3446666666
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc--C
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST--G 254 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~ 254 (489)
+ +.+.+||.... +.+.... . .+ .=..+ .+++. .|+.+..++.|.++|..+.+ .+..+. .
T Consensus 84 ~-~~v~v~D~~tl-----~~~~ti~---~--~~---~Gwgl--t~dg~-~L~vSdgs~~l~~iDp~t~~--~~~~I~V~~ 144 (243)
T 3mbr_X 84 N-HEGFVYDLATL-----TPRARFR---Y--PG---EGWAL--TSDDS-HLYMSDGTAVIRKLDPDTLQ--QVGSIKVTA 144 (243)
T ss_dssp S-SEEEEEETTTT-----EEEEEEE---C--SS---CCCEE--EECSS-CEEEECSSSEEEEECTTTCC--EEEEEECEE
T ss_pred C-CEEEEEECCcC-----cEEEEEe---C--CC---CceEE--eeCCC-EEEEECCCCeEEEEeCCCCe--EEEEEEEcc
Confidence 6 99999999322 3333222 1 11 11344 45677 55555668999999999876 333322 1
Q ss_pred CC---CceeEEEEeecCCEEEEEe-CCCeEEEEEcCCCcccceee
Q 037120 255 SH---GTLNSIQLHAENQIIFAAG-KHGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 255 h~---~~v~~~~~~p~~~~l~~~~-~dg~i~lwd~~~~~~~~~~~ 295 (489)
+. ..++.+.+. +|. +++.. .+..|.+.|.++++.+..+.
T Consensus 145 ~g~~~~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~id 187 (243)
T 3mbr_X 145 GGRPLDNLNELEWV-NGE-LLANVWLTSRIARIDPASGKVVAWID 187 (243)
T ss_dssp TTEECCCEEEEEEE-TTE-EEEEETTTTEEEEECTTTCBEEEEEE
T ss_pred CCcccccceeeEEe-CCE-EEEEECCCCeEEEEECCCCCEEEEEE
Confidence 11 245566665 555 55555 47899999999999866665
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00065 Score=60.51 Aligned_cols=211 Identities=11% Similarity=0.045 Sum_probs=112.6
Q ss_pred CeeEEEEecCCCcEEEEEeC--CCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCc
Q 037120 213 GLSDLAFSAVNTSRLIASDT--HGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGR 289 (489)
Q Consensus 213 ~v~~~~~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~ 289 (489)
....++|++++. ++++.+. ++.|.++|+.+++ .+....- ........+..++..++.+.. ++.+.++|..+++
T Consensus 22 f~~Gl~~~~dg~-Lyvstg~~~~s~v~~iD~~tg~--v~~~i~l-~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~ 97 (266)
T 2iwa_A 22 FTQGLVYAENDT-LFESTGLYGRSSVRQVALQTGK--VENIHKM-DDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLS 97 (266)
T ss_dssp CEEEEEECSTTE-EEEEECSTTTCEEEEEETTTCC--EEEEEEC-CTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTE
T ss_pred CcccEEEeCCCe-EEEECCCCCCCEEEEEECCCCC--EEEEEec-CCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCc
Confidence 457899999865 5565553 6899999999987 4443321 111222233345667777766 9999999999988
Q ss_pred ccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCC
Q 037120 290 TSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCP 369 (489)
Q Consensus 290 ~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~ 369 (489)
.+.++...... ...+++||+.+..... ...+.- ++|....+. ..+.+.... ..+
T Consensus 98 v~~~i~~g~~~------g~glt~Dg~~l~vs~g-----s~~l~v--iD~~t~~v~---------~~I~Vg~~~-~p~--- 151 (266)
T 2iwa_A 98 NIKNFTHQMKD------GWGLATDGKILYGSDG-----TSILYE--IDPHTFKLI---------KKHNVKYNG-HRV--- 151 (266)
T ss_dssp EEEEEECCSSS------CCEEEECSSSEEEECS-----SSEEEE--ECTTTCCEE---------EEEECEETT-EEC---
T ss_pred EEEEEECCCCC------eEEEEECCCEEEEECC-----CCeEEE--EECCCCcEE---------EEEEECCCC-ccc---
Confidence 87777632111 1123334433321000 111111 122211111 011111000 000
Q ss_pred CCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcc--cCCcccC
Q 037120 370 PPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKK--ENRFVPL 447 (489)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~h 447 (489)
.....+.|. + +.+.+....++.|.+.|..++ +.+..+...+..+. ... .+-
T Consensus 152 --------------~~~nele~~-d-g~lyvn~~~~~~V~vID~~tg----------~V~~~I~~~g~~~~~~~~~-~~~ 204 (266)
T 2iwa_A 152 --------------IRLNELEYI-N-GEVWANIWQTDCIARISAKDG----------TLLGWILLPNLRKKLIDEG-FRD 204 (266)
T ss_dssp --------------CCEEEEEEE-T-TEEEEEETTSSEEEEEETTTC----------CEEEEEECHHHHHHHHHTT-CTT
T ss_pred --------------ccceeEEEE-C-CEEEEecCCCCeEEEEECCCC----------cEEEEEECCCccccccccc-ccc
Confidence 000112333 3 455566667889999999998 66655542211100 000 011
Q ss_pred CCceEEEEeeCCCC-eEEeccCcceeEEEecccc
Q 037120 448 SEGVTACVTHPLNN-TIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 448 ~~~V~~va~~p~~~-~i~sgs~dg~i~v~~~~~~ 480 (489)
....+.++|+|+++ .++++...+.|.++.-...
T Consensus 205 ~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 205 IDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp CCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred cCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 24679999999985 7888888888888755443
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=0.0016 Score=67.03 Aligned_cols=79 Identities=14% Similarity=0.245 Sum_probs=53.9
Q ss_pred eEEEEecCCCcEEEEEeCCC-------------------cEEEEECCCCCcCceeecc-CCC-------CceeEEEEeec
Q 037120 215 SDLAFSAVNTSRLIASDTHG-------------------VVNIWDRRVGVLPSLELST-GSH-------GTLNSIQLHAE 267 (489)
Q Consensus 215 ~~~~~~~~~~~~l~s~s~dg-------------------~i~iwd~~~~~~~~~~~~~-~h~-------~~v~~~~~~p~ 267 (489)
..+++.|++. +++.+..++ .|..+|.++++.. .+... .|. .....+....+
T Consensus 246 ~~~~~d~~~~-~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~-W~~~~~~~d~wd~~~~~~p~l~~~~~d 323 (677)
T 1kb0_A 246 DSMTFDAELN-TMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYK-WHYQETPGDNWDYTSTQPMILADIKIA 323 (677)
T ss_dssp SCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE-EEEESSTTCCSCCCCCSCCEEEEEEET
T ss_pred cceeEcCCCC-EEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEE-EEEecCCCcccccccCCCcEEEecccC
Confidence 4678888888 777776554 5999999998743 21111 221 12233344457
Q ss_pred C---CEEEEEeCCCeEEEEEcCCCcccceee
Q 037120 268 N---QIIFAAGKHGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 268 ~---~~l~~~~~dg~i~lwd~~~~~~~~~~~ 295 (489)
| ..++.++.+|.|+++|.++|+.+..+.
T Consensus 324 G~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~ 354 (677)
T 1kb0_A 324 GKPRKVILHAPKNGFFFVLDRTNGKFISAKN 354 (677)
T ss_dssp TEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred CcEeeEEEEECCCCEEEEEECCCCCEecccc
Confidence 7 678888889999999999999866554
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0079 Score=53.81 Aligned_cols=96 Identities=13% Similarity=0.070 Sum_probs=61.7
Q ss_pred CeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCccc
Q 037120 213 GLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTS 291 (489)
Q Consensus 213 ~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~ 291 (489)
.+..++|.+++..++++-...+.|..+|...... .............++++|++..++.+.. .+.|.++|+.... .
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~--~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~-~ 113 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP--TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQ-R 113 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC--EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-C
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc--EEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCC-E
Confidence 5678999997774566666788999999976542 2222222246789999998777776655 7899999987432 2
Q ss_pred ceee-cCCccCCCCeeEEEeCCCCc
Q 037120 292 APFH-NHKEVCHLPLTSLKLASMLE 315 (489)
Q Consensus 292 ~~~~-~~~~~~~~~v~~l~~~~~~~ 315 (489)
..+. ..... ...++++|++.
T Consensus 114 ~~~~~~~~~~----P~~i~vd~~~g 134 (267)
T 1npe_A 114 RVLFDTGLVN----PRGIVTDPVRG 134 (267)
T ss_dssp EEEECSSCSS----EEEEEEETTTT
T ss_pred EEEEECCCCC----ccEEEEeeCCC
Confidence 2221 11122 56777777543
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=0.0019 Score=59.79 Aligned_cols=197 Identities=11% Similarity=-0.011 Sum_probs=106.7
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCC---cccc--cccccCCCCCCceeEEEeeC-CCCCEE
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGL---KEDQ--SKHLLHIPLPQQLDAVRWNL-ANQDEV 171 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~---~~~~--~~~~~h~~~~~~V~~v~~~~-~~~~~l 171 (489)
...+++++++|+++.++..++.|..|+..+............+. .... ......... ...+++.+ ++ .++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---p~gi~~~~~~g-~l~ 95 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGR---TYDISYNLQNN-QLY 95 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCC---EEEEEEETTTT-EEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCC---CceEEEcCCCC-cEE
Confidence 35678899999978888889999999887632211000000000 0000 000000112 67799997 54 355
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCC-cccCeeEEEEec-CCCcEEEEEeC-----------------
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSD-VQKGLSDLAFSA-VNTSRLIASDT----------------- 232 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~-~~~~~l~s~s~----------------- 232 (489)
++.. . +.|..+|..... ...+... ..+ .....+.+++.+ +|. ++++-..
T Consensus 96 v~d~-~-~~i~~~d~~~g~---~~~~~~~------~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~ 163 (322)
T 2fp8_A 96 IVDC-Y-YHLSVVGSEGGH---ATQLATS------VDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDK 163 (322)
T ss_dssp EEET-T-TEEEEECTTCEE---CEEEESE------ETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCC
T ss_pred EEEC-C-CCEEEEeCCCCE---EEEeccc------CCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCC
Confidence 5544 3 557778763111 0111100 011 123578899999 887 6665432
Q ss_pred CCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEe-CCCeEEEEEcCCCcc--cceeecCCccCCCCeeEEE
Q 037120 233 HGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAG-KHGSIYLWDLRGGRT--SAPFHNHKEVCHLPLTSLK 309 (489)
Q Consensus 233 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~-~dg~i~lwd~~~~~~--~~~~~~~~~~~~~~v~~l~ 309 (489)
++.|..||..+++.. .....-...+.++++|+++.|+.+. ..+.|..||+..... ...+.. .. . ...++
T Consensus 164 ~g~v~~~d~~~~~~~---~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~---g-P~gi~ 235 (322)
T 2fp8_A 164 TGRLIKYDPSTKETT---LLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IP---N-PGNIK 235 (322)
T ss_dssp CEEEEEEETTTTEEE---EEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CS---S-EEEEE
T ss_pred CceEEEEeCCCCEEE---EeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CC---C-CCCeE
Confidence 367889998765421 1111113456799999999777764 478999999875321 111111 11 1 45566
Q ss_pred eCCCCccee
Q 037120 310 LASMLEKIG 318 (489)
Q Consensus 310 ~~~~~~~i~ 318 (489)
+.++|....
T Consensus 236 ~d~~G~l~v 244 (322)
T 2fp8_A 236 RNADGHFWV 244 (322)
T ss_dssp ECTTSCEEE
T ss_pred ECCCCCEEE
Confidence 777765443
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.2e-06 Score=83.40 Aligned_cols=158 Identities=9% Similarity=0.016 Sum_probs=75.9
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
+.+..+..++..+++++.||.|+.||..+++..-. ...+........ ..+..+ ..+++++.|
T Consensus 40 ~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~--------~~~~~~~~~~~s-------p~~~~~--~~v~~g~~d- 101 (369)
T 2hz6_A 40 VLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTK--------LPFTIPELVQAS-------PCRSSD--GILYMGKKQ- 101 (369)
T ss_dssp SCCCC-----CCEEECTTTCCEEEC-----CCSEE--------CSCCHHHHHTTC-------SCC-------CCCCEEE-
T ss_pred ceecceEcCCCEEEEeCCCCEEEEEECCCCceeee--------eeccCccccccC-------ceEecC--CEEEEEeCC-
Confidence 33444556777888888999999999987544321 100000000000 011112 245566666
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCc
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGT 258 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~ 258 (489)
+.|..||...+... ..+ ..+. ...++|++. .+++++.|+.|+.||.++++.. .+ +.. ..
T Consensus 102 g~v~a~D~~tG~~~--------w~~----~~~~----~~~~~p~~~-~v~~~~~dg~v~a~d~~tG~~~-W~-~~~--~~ 160 (369)
T 2hz6_A 102 DIWYVIDLLTGEKQ--------QTL----SSAF----ADSLSPSTS-LLYLGRTEYTITMYDTKTRELR-WN-ATY--FD 160 (369)
T ss_dssp EEEEEECCC---------------------------------------EEEEEEEEEEECCCSSSSSCC-CE-EEE--EE
T ss_pred CEEEEEECCCCcEE--------EEe----cCCC----cccccccCC-EEEEEecCCEEEEEECCCCCEE-Ee-Eec--cc
Confidence 89999999544211 111 1111 134566676 8888899999999999988632 21 111 11
Q ss_pred eeEEEEeecC---CEEEEEeCCCeEEEEEcCCCcccceee
Q 037120 259 LNSIQLHAEN---QIIFAAGKHGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 259 v~~~~~~p~~---~~l~~~~~dg~i~lwd~~~~~~~~~~~ 295 (489)
....+++++. ..+++++.||.|+.||.++|+.+..+.
T Consensus 161 ~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 161 YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 2223333332 567888889999999999998766555
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0031 Score=65.01 Aligned_cols=78 Identities=15% Similarity=0.196 Sum_probs=52.6
Q ss_pred eEEEEecCCCcEEEEEeCCCc-------------------EEEEECCCCCcCceeecc-CCC-------CceeEEEEeec
Q 037120 215 SDLAFSAVNTSRLIASDTHGV-------------------VNIWDRRVGVLPSLELST-GSH-------GTLNSIQLHAE 267 (489)
Q Consensus 215 ~~~~~~~~~~~~l~s~s~dg~-------------------i~iwd~~~~~~~~~~~~~-~h~-------~~v~~~~~~p~ 267 (489)
..+++.|++. +++.++.++. |..||.++++.. .+... .|. .++.......+
T Consensus 238 ~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~-W~~~~~~~d~wd~~~~~~~~l~d~~~~ 315 (689)
T 1yiq_A 238 DSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYV-WHYQTTPGDAWDYTATQHMILAELPID 315 (689)
T ss_dssp SCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEE-EEEESSTTCCSCCCCCSCEEEEEEEET
T ss_pred cceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCcee-EeeecCCcccccccCCCCcEEEeeccC
Confidence 3678888887 8888887763 999999998743 22211 221 12222233345
Q ss_pred CC---EEEEEeCCCeEEEEEcCCCccccee
Q 037120 268 NQ---IIFAAGKHGSIYLWDLRGGRTSAPF 294 (489)
Q Consensus 268 ~~---~l~~~~~dg~i~lwd~~~~~~~~~~ 294 (489)
|+ .++.++.+|.++++|.++|+.+...
T Consensus 316 G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 345 (689)
T 1yiq_A 316 GKPRKVLMQAPKNGFFYVIDRATGELLSAK 345 (689)
T ss_dssp TEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred CcEEEEEEEECCCCeEEEEECCCCCEeccc
Confidence 65 6788888999999999999886443
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00012 Score=72.18 Aligned_cols=73 Identities=5% Similarity=-0.013 Sum_probs=53.3
Q ss_pred CeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCc----------CceeeccCCCCceeEEEEeecCCEEEEEeC-CCeEE
Q 037120 213 GLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVL----------PSLELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIY 281 (489)
Q Consensus 213 ~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~----------~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~ 281 (489)
...++.++|||+..++++..+.+|.++|+.+.+. ...... .-......++|+|+| ++++... |++|.
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG-~aY~t~~ldsqV~ 355 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRG-NAYTSLFLDSQVV 355 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTS-EEEEEETTTTEEE
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc-CCCCCcceEEECCCC-eEEEEEecCCcEE
Confidence 4567899999995556666899999999985420 011111 223456789999999 7777766 99999
Q ss_pred EEEcCC
Q 037120 282 LWDLRG 287 (489)
Q Consensus 282 lwd~~~ 287 (489)
+||+.+
T Consensus 356 kwdi~~ 361 (595)
T 1fwx_A 356 KWNIED 361 (595)
T ss_dssp EEEHHH
T ss_pred EEEhhH
Confidence 999986
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.92 E-value=0.0097 Score=56.24 Aligned_cols=156 Identities=12% Similarity=0.055 Sum_probs=82.8
Q ss_pred CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCce-eEEEeeCCCCCEEEEEecCCCEEEEEEe
Q 037120 108 GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQL-DAVRWNLANQDEVACASTRSNVVSIYDI 186 (489)
Q Consensus 108 g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V-~~v~~~~~~~~~l~s~~~d~g~i~vwd~ 186 (489)
+..|.+++.++.|..+|..+++..-.. ........ .+.. ...+ ..+... + ..++.++.+ +.|..+|.
T Consensus 53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~------~~~~~~~~-~~~~-~~~~~~~~~~~--~-~~v~v~~~~-g~l~a~d~ 120 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNADDGKEIWSV------SLAEKDGW-FSKE-PALLSGGVTVS--G-GHVYIGSEK-AQVYALNT 120 (376)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEE------ECCC---C-CSCC-CCCEEEEEEEE--T-TEEEEEETT-SEEEEEET
T ss_pred CCEEEEEcCCCeEEEEEccCCceeeee------cCcccccc-cccc-CcccccCceEe--C-CEEEEEcCC-CEEEEEEC
Confidence 557777888899999999875543210 00000000 0000 0112 222222 2 256666666 99999998
Q ss_pred ccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCce------e
Q 037120 187 GYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTL------N 260 (489)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v------~ 260 (489)
..+. .+-... +.+. ........ +. .++.++.++.|..+|.++++.. . ..... ..+ .
T Consensus 121 ~tG~-----~~W~~~-----~~~~--~~~~p~~~--~~-~v~v~~~~g~l~~~d~~tG~~~-W-~~~~~-~~~~~~~~~~ 182 (376)
T 3q7m_A 121 SDGT-----VAWQTK-----VAGE--ALSRPVVS--DG-LVLIHTSNGQLQALNEADGAVK-W-TVNLD-MPSLSLRGES 182 (376)
T ss_dssp TTCC-----EEEEEE-----CSSC--CCSCCEEE--TT-EEEEECTTSEEEEEETTTCCEE-E-EEECC-C-----CCCC
T ss_pred CCCC-----EEEEEe-----CCCc--eEcCCEEE--CC-EEEEEcCCCeEEEEECCCCcEE-E-EEeCC-CCceeecCCC
Confidence 4432 111111 1111 11111122 34 6778888999999999988632 1 22111 111 1
Q ss_pred EEEEeecCCEEEEEeCCCeEEEEEcCCCcccceee
Q 037120 261 SIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 261 ~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~ 295 (489)
.... .+..+++++.++.|..+|..+++.+....
T Consensus 183 ~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~ 215 (376)
T 3q7m_A 183 APTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQR 215 (376)
T ss_dssp CCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEE
T ss_pred CcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEe
Confidence 2222 24567888889999999999998755544
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.001 Score=69.50 Aligned_cols=160 Identities=11% Similarity=0.060 Sum_probs=90.6
Q ss_pred ceeEEEEC-CCCcEEEEEec-CC----eEEEEeCCCc-ccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 98 GISALDFD-CKGIYLVSATR-SG----CLTVHDFESL-YYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 98 ~V~~~~fs-~~g~~la~g~~-dg----~i~vwd~~~~-~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
.+...+|| |||++||-+.. +| .|+++|+.++ +.... .+ ... ...++|+|+++.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-------~~---~~~---------~~~~~WspDg~~l 235 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-------KV---SGT---------NGEIVWGPDHTSL 235 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-------CE---EEE---------CSCCEECSSTTEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-------cc---cCc---------eeeEEEecCCCEE
Confidence 47889999 99999986654 23 5999999885 32110 00 001 2348999999866
Q ss_pred EEEEecCC---CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe---CCCcEEEEECCCC
Q 037120 171 VACASTRS---NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD---THGVVNIWDRRVG 244 (489)
Q Consensus 171 l~s~~~d~---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s---~dg~i~iwd~~~~ 244 (489)
+++...+. ..|.++++.........+.. ..+......+.|+||++ .|+..+ ....|+++|+.++
T Consensus 236 ~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~---------~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 236 FYVTKDETLRENKVWRHVMGKLQSEDVCLYE---------EHNPLFSAFMYKAADTN-TLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEEECTTCCEEEEEEEETTSCGGGCEEEEE---------CCCTTCEEEEEECTTSS-EEEEEEECSSCEEEEEEESSSC
T ss_pred EEEEECCCCCCCEEEEEECCCCchhcEEEEe---------cCCCceEEEEEECCCCC-EEEEEecCCCCceEEEEECCCC
Confidence 66654221 25777777432111111111 11223456789999999 554443 3446888999875
Q ss_pred CcCc--eeeccCCCCceeEEEEeecCCEEEEEeC-C----CeEEEEEcCC
Q 037120 245 VLPS--LELSTGSHGTLNSIQLHAENQIIFAAGK-H----GSIYLWDLRG 287 (489)
Q Consensus 245 ~~~~--~~~~~~h~~~v~~~~~~p~~~~l~~~~~-d----g~i~lwd~~~ 287 (489)
.... ............++.|+. |..|+..+. + ..|..+|+.+
T Consensus 306 ~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~ 354 (751)
T 2xe4_A 306 NAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQ 354 (751)
T ss_dssp TTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTS
T ss_pred CCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCC
Confidence 3222 222223344455555544 555444443 3 3677778765
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00037 Score=71.75 Aligned_cols=78 Identities=12% Similarity=0.124 Sum_probs=53.9
Q ss_pred CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCC
Q 037120 234 GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASM 313 (489)
Q Consensus 234 g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 313 (489)
|.|..||+.+++.. .+. .+..++....+...+..+++++.||.+++||.++++.+..+....... -.-+.|..+
T Consensus 457 g~l~A~D~~tG~~~-W~~--~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~---~~p~~y~~~ 530 (677)
T 1kb0_A 457 GRLLAWDPVAQKAA-WSV--EHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVV---AAPSTYMVD 530 (677)
T ss_dssp EEEEEEETTTTEEE-EEE--EESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC---SCCEEEEET
T ss_pred cEEEEEeCCCCcEE-eec--CCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcc---cCCEEEEeC
Confidence 78999999998632 222 233445556677888899999889999999999999988887433221 223445566
Q ss_pred Ccce
Q 037120 314 LEKI 317 (489)
Q Consensus 314 ~~~i 317 (489)
|+.+
T Consensus 531 G~~~ 534 (677)
T 1kb0_A 531 GRQY 534 (677)
T ss_dssp TEEE
T ss_pred CEEE
Confidence 6533
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00026 Score=73.11 Aligned_cols=79 Identities=14% Similarity=0.157 Sum_probs=53.9
Q ss_pred CCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCC
Q 037120 233 HGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLAS 312 (489)
Q Consensus 233 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~ 312 (489)
+|.|..||+.+++.. .+ .. +..++....+...+.++++++.||.|+.||.++|+.+..++...... -.-+.|..
T Consensus 454 ~g~l~A~D~~tG~~~-W~-~~-~~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~---~~p~ty~~ 527 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAA-WE-VP-YVTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVM---AAPVTYSV 527 (689)
T ss_dssp EEEEEEEETTTTEEE-EE-EE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC---SCCEEEEE
T ss_pred ceeEEEEECCCCCeE-eE-cc-CCCCccCccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCCcc---cCceEEEE
Confidence 378999999998632 22 21 22334444667788899999999999999999999988887543321 12345566
Q ss_pred CCcce
Q 037120 313 MLEKI 317 (489)
Q Consensus 313 ~~~~i 317 (489)
+|+..
T Consensus 528 ~G~qy 532 (689)
T 1yiq_A 528 DGEQY 532 (689)
T ss_dssp TTEEE
T ss_pred CCEEE
Confidence 77543
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0007 Score=62.70 Aligned_cols=168 Identities=8% Similarity=-0.007 Sum_probs=92.3
Q ss_pred EEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCE
Q 037120 101 ALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNV 180 (489)
Q Consensus 101 ~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~ 180 (489)
+..++.+|. |..|+.++.|..|| .+.+..-. ....... +.++...+++ .+..++ .+
T Consensus 24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~--------~~~~~~~---------~~~~~~~~~g--~l~v~t--~~- 79 (330)
T 3hxj_A 24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWF--------FKSGEII---------ECRPSIGKDG--TIYFGS--DK- 79 (330)
T ss_dssp CCEECTTSC-EECSSTTTTTEEEC-TTSCEEES--------SCGGGEE---------EECCEETTTT--EECCSS--CE-
T ss_pred CceEccCCe-EEEEcCCCEEEEEC-CCCcEEEE--------EecCCCc---------ccceEEecCC--cEEEec--Cc-
Confidence 345556664 55566788888899 65433221 1111111 4556666554 454454 35
Q ss_pred EEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCcee
Q 037120 181 VSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLN 260 (489)
Q Consensus 181 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~ 260 (489)
|..+|.. +. .+... ...........+. +. .+..++.++.|..+|.. ++. ......+...+.
T Consensus 80 l~~~d~~-g~-----~~~~~-------~~~~~~~~~~~~~--~~-~l~v~t~~~~l~~~d~~-g~~--~~~~~~~~~~~~ 140 (330)
T 3hxj_A 80 VYAINPD-GT-----EKWRF-------DTKKAIVSDFTIF--ED-ILYVTSMDGHLYAINTD-GTE--KWRFKTKKAIYA 140 (330)
T ss_dssp EEEECCC-GG-----GGGGS-------CC-----CCEEEE--TT-EEEEECTTSEEEEECTT-SCE--EEEEECSSCCCS
T ss_pred EEEECCC-Cc-----EEEEE-------ECCCCcccCceEE--CC-EEEEEecCCEEEEEcCC-CCE--EEEEcCCCceee
Confidence 7777751 11 11000 0011112223333 33 67778889999999988 552 222223344566
Q ss_pred EEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 261 SIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 261 ~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
++...+++. ++.++.++.|..||.. ++.+..+...... +.++...+++...
T Consensus 141 ~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~----~~~~~~d~~g~l~ 191 (330)
T 3hxj_A 141 TPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAI----TSAASIGKDGTIY 191 (330)
T ss_dssp CCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCC----CSCCEECTTCCEE
T ss_pred eeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCc----eeeeEEcCCCEEE
Confidence 777777776 5667778999999998 7665555433333 5556666665544
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0035 Score=55.22 Aligned_cols=79 Identities=13% Similarity=0.117 Sum_probs=56.5
Q ss_pred CeeEEEEecCCCcEEEEEeCCC--cEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCc
Q 037120 213 GLSDLAFSAVNTSRLIASDTHG--VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGR 289 (489)
Q Consensus 213 ~v~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~ 289 (489)
-...+.|+ ++. ++.+.+.+| .|+++|+.+++ .+....- ........+.+++..|+.... ++.+.+||..+++
T Consensus 44 ftqGL~~~-~~~-LyestG~~g~S~v~~vD~~Tgk--v~~~~~l-~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 44 FTEGFFYR-NGY-FYESTGLNGRSSIRKVDIESGK--TLQQIEL-GKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp EEEEEEEE-TTE-EEEEEEETTEEEEEEECTTTCC--EEEEEEC-CTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCC
T ss_pred ccceEEEE-CCE-EEEECCCCCCceEEEEECCCCc--EEEEEec-CCccceeEEEEeCCEEEEEEeeCCEEEEEECccCc
Confidence 34778888 565 777777766 89999999987 4433322 233444444456777777765 9999999999999
Q ss_pred ccceeec
Q 037120 290 TSAPFHN 296 (489)
Q Consensus 290 ~~~~~~~ 296 (489)
.+.++..
T Consensus 119 ~~~ti~~ 125 (262)
T 3nol_A 119 QVRSFNY 125 (262)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 8888774
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0021 Score=56.70 Aligned_cols=78 Identities=9% Similarity=0.129 Sum_probs=54.7
Q ss_pred CeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCccc
Q 037120 213 GLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTS 291 (489)
Q Consensus 213 ~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~ 291 (489)
-...+.|. ++. ++.+.+.+|.|+++|+.+++. ++... .......-..+++..|+.... ++.+.+||..+++.+
T Consensus 56 ftqGL~~~-~~~-Ly~stG~~g~v~~iD~~Tgkv--~~~~l--~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~ 129 (268)
T 3nok_A 56 FTQGLVFH-QGH-FFESTGHQGTLRQLSLESAQP--VWMER--LGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRE 129 (268)
T ss_dssp CEEEEEEE-TTE-EEEEETTTTEEEECCSSCSSC--SEEEE--CTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEE
T ss_pred ccceEEEE-CCE-EEEEcCCCCEEEEEECCCCcE--EeEEC--CCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEE
Confidence 44678887 344 788888999999999999873 33322 223333333445666666654 999999999999888
Q ss_pred ceeec
Q 037120 292 APFHN 296 (489)
Q Consensus 292 ~~~~~ 296 (489)
.++..
T Consensus 130 ~ti~~ 134 (268)
T 3nok_A 130 RTTRY 134 (268)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 77774
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.0013 Score=67.61 Aligned_cols=117 Identities=11% Similarity=0.003 Sum_probs=69.1
Q ss_pred EEEECC-CCcEEEEEecCC-----------eEEEEeCCCcccccCCCCCCCCCccccccc-ccCCCCCCceeEEEeeCCC
Q 037120 101 ALDFDC-KGIYLVSATRSG-----------CLTVHDFESLYYQCNGTLPGVGLKEDQSKH-LLHIPLPQQLDAVRWNLAN 167 (489)
Q Consensus 101 ~~~fs~-~g~~la~g~~dg-----------~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~-~~h~~~~~~V~~v~~~~~~ 167 (489)
++++.+ +|++++.|+.+. .+.+||..+..-... ... ..+... ..++++..++
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~------------~~~~~~~~~~---~~~~~~~~~g 254 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR------------TVTVTKHDMF---CPGISMDGNG 254 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC------------EEEECSCCCS---SCEEEECTTS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeC------------cccCCCCCCc---cccccCCCCC
Confidence 556677 899999988643 578899887433221 000 011111 3346777777
Q ss_pred CCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CC-----CcEEEEEC
Q 037120 168 QDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-TH-----GVVNIWDR 241 (489)
Q Consensus 168 ~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~d-----g~i~iwd~ 241 (489)
. +++.|+.++..+.+||..... ...... +.. ...-.+++..++++ +++.|+ .+ ..+.+||.
T Consensus 255 ~-lyv~GG~~~~~v~~yd~~t~~------W~~~~~----~~~-~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~ 321 (656)
T 1k3i_A 255 Q-IVVTGGNDAKKTSLYDSSSDS------WIPGPD----MQV-ARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSP 321 (656)
T ss_dssp C-EEEECSSSTTCEEEEEGGGTE------EEECCC----CSS-CCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEET
T ss_pred C-EEEeCCCCCCceEEecCcCCc------eeECCC----CCc-cccccceEEecCCe-EEEEeCcccCCcccccceEeCC
Confidence 5 777777554789999984321 111110 111 11223455667888 888888 44 57999999
Q ss_pred CCCC
Q 037120 242 RVGV 245 (489)
Q Consensus 242 ~~~~ 245 (489)
.+.+
T Consensus 322 ~t~~ 325 (656)
T 1k3i_A 322 SSKT 325 (656)
T ss_dssp TTTE
T ss_pred CCCc
Confidence 8765
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.70 E-value=0.029 Score=51.29 Aligned_cols=157 Identities=11% Similarity=-0.023 Sum_probs=88.7
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
.....++|+++|+++++-..++.|..||........ . .. ......+++.+++. ++++...
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~---------~-~~---------~~~p~gia~~~dG~-l~vad~~ 91 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIH---------A-TV---------EGKVSGLAFTSNGD-LVATGWN 91 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEE---------E-EC---------SSEEEEEEECTTSC-EEEEEEC
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEE---------E-eC---------CCCceeEEEcCCCc-EEEEecc
Confidence 346789999999988877788999999877521111 0 00 01277799999986 6655542
Q ss_pred CC-CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee-----
Q 037120 177 RS-NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE----- 250 (489)
Q Consensus 177 d~-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~----- 250 (489)
.+ ..|..+|...+ .. ..+... . .......++..+.+. .+++-..++.|..+|...+......
T Consensus 92 ~~~~~v~~~d~~~g--~~-~~~~~~-------~-~~~~~~g~~~~~~~~-~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~ 159 (306)
T 2p4o_A 92 ADSIPVVSLVKSDG--TV-ETLLTL-------P-DAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPML 159 (306)
T ss_dssp TTSCEEEEEECTTS--CE-EEEEEC-------T-TCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGG
T ss_pred CCcceEEEEcCCCC--eE-EEEEeC-------C-CccccCcccccCCCc-EEEEECCCCeEEEEeCCCCcEeEEEECCcc
Confidence 21 24666665322 11 111110 1 112234455444443 4555546889999998653211110
Q ss_pred ---eccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCC
Q 037120 251 ---LSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRG 287 (489)
Q Consensus 251 ---~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~ 287 (489)
.....-...+.+ +|++.+|+.+.. .+.|..||+..
T Consensus 160 ~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~ 198 (306)
T 2p4o_A 160 ARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDS 198 (306)
T ss_dssp SCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCT
T ss_pred ccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCC
Confidence 000111233455 889888777765 78999999874
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.039 Score=52.39 Aligned_cols=182 Identities=12% Similarity=-0.051 Sum_probs=103.9
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
.+..|.+..+.+ +|+.+. ...|+..++....... ..... .. ...++|.+....++++-..
T Consensus 77 d~~~C~~~~~~~-~l~~~~-~~~I~~i~~~~~~~~~---------~~~~~------~~---~~gl~~d~~~~~ly~~D~~ 136 (386)
T 3v65_B 77 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTL---------LLNNL------EN---AIALDFHHRRELVFWSDVT 136 (386)
T ss_dssp TSSCEEECSSCC-EEEEEC-BSCEEEECTTSCCCEE---------EECSC------SC---EEEEEEETTTTEEEEEETT
T ss_pred CCCeECCccccc-eeEeec-CccceeeccCCCcEEE---------EecCC------Cc---cEEEEEecCCCeEEEEeCC
Confidence 345677766755 343333 3568888877632211 11111 11 6779999877666666655
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~ 256 (489)
. +.|..+++.... . ..+. .........+++.+.+.+++++-...+.|.+.++..... .......-
T Consensus 137 ~-~~I~r~~~~g~~--~-~~~~---------~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~--~~l~~~~l 201 (386)
T 3v65_B 137 L-DRILRANLNGSN--V-EEVV---------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR--KVLLWQSL 201 (386)
T ss_dssp T-TEEEEEETTSCC--E-EEEE---------CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC--EEEECSSC
T ss_pred C-CcEEEEecCCCC--c-EEEE---------eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce--EEeecCCC
Confidence 5 899999984221 0 1110 111124567888887664666666778899998875431 11222223
Q ss_pred CceeEEEEeecCCEEEEEeC-C-CeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 257 GTLNSIQLHAENQIIFAAGK-H-GSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~-d-g~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
.....++++|.+..|+.+.. . +.|..+++............-.. .+.|+|+|++..+
T Consensus 202 ~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~----PnGlavd~~~~~l 260 (386)
T 3v65_B 202 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFW----PNGLTIDYAGRRM 260 (386)
T ss_dssp SCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSC----EEEEEEEGGGTEE
T ss_pred CCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCC----eeeEEEeCCCCEE
Confidence 55789999998877777654 4 78888888653221111111112 4666666655433
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.036 Score=48.94 Aligned_cols=174 Identities=11% Similarity=0.126 Sum_probs=100.4
Q ss_pred cccCCCceeEEEECCCCc-EEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPGISALDFDCKGI-YLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~-~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..-...+..++|+|++. ++++...++.|...|.. +...... .+.+. ...-.|++.+++. +
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i------------~l~g~----~D~EGIa~~~~g~-~ 83 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTI------------PLDFV----KDLETIEYIGDNQ-F 83 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEE------------ECSSC----SSEEEEEECSTTE-E
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEE------------ecCCC----CChHHeEEeCCCE-E
Confidence 444445699999999865 55557778888888887 3333311 11111 1155688887764 4
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCC--CCcCc
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRV--GVLPS 248 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~--~~~~~ 248 (489)
+++...+ +.+.++++..... ...+.... +.............|+|.|.++ .|+++.......+|.+.. ... .
T Consensus 84 ~vs~E~~-~~l~~~~v~~~~~--i~~~~~~~-~~~~~~~~N~g~EGLA~d~~~~-~L~va~E~~p~~i~~~~g~~~~~-~ 157 (255)
T 3qqz_A 84 VISDERD-YAIYVISLTPNSE--VKILKKIK-IPLQESPTNCGFEGLAYSRQDH-TFWFFKEKNPIEVYKVNGLLSSN-E 157 (255)
T ss_dssp EEEETTT-TEEEEEEECTTCC--EEEEEEEE-CCCSSCCCSSCCEEEEEETTTT-EEEEEEESSSEEEEEEESTTCSS-C
T ss_pred EEEECCC-CcEEEEEcCCCCe--eeeeeeec-cccccccccCCcceEEEeCCCC-EEEEEECcCCceEEEEcccccCC-c
Confidence 4444444 8999999854321 11111111 0000123456789999999998 566566444444444431 110 1
Q ss_pred eeec-------cCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcc
Q 037120 249 LELS-------TGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRT 290 (489)
Q Consensus 249 ~~~~-------~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~ 290 (489)
+... ..+...+.+++++|....+++.+. ...|..+|.. ++.
T Consensus 158 l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~ 206 (255)
T 3qqz_A 158 LHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEV 206 (255)
T ss_dssp CEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCE
T ss_pred eeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCE
Confidence 1111 112345789999997776666666 8889999966 444
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.036 Score=48.31 Aligned_cols=118 Identities=8% Similarity=-0.013 Sum_probs=71.2
Q ss_pred eeEEEeeCCCCCEEEEEecC-CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcE
Q 037120 158 LDAVRWNLANQDEVACASTR-SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVV 236 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d-~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i 236 (489)
...+.|+. + .++.+.+.+ ...|+++|+..+ +++.... +.. ........+.+..++...-.++.+
T Consensus 23 tqGL~~~~-~-~LyestG~~g~S~v~~vD~~tg-----kv~~~~~-----l~~---~~fgeGi~~~~~~ly~ltw~~~~v 87 (243)
T 3mbr_X 23 TEGLFYLR-G-HLYESTGETGRSSVRKVDLETG-----RILQRAE-----VPP---PYFGAGIVAWRDRLIQLTWRNHEG 87 (243)
T ss_dssp EEEEEEET-T-EEEEEECCTTSCEEEEEETTTC-----CEEEEEE-----CCT---TCCEEEEEEETTEEEEEESSSSEE
T ss_pred cccEEEEC-C-EEEEECCCCCCceEEEEECCCC-----CEEEEEe-----CCC---CcceeEEEEeCCEEEEEEeeCCEE
Confidence 55689987 3 466666654 149999999443 3333222 111 222222223345355555588999
Q ss_pred EEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceee
Q 037120 237 NIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 237 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~ 295 (489)
.+||..+.+ .+..+... .. ...+.+++..|+.+..++.|.++|..+.+.+..+.
T Consensus 88 ~v~D~~tl~--~~~ti~~~-~~--Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~ 141 (243)
T 3mbr_X 88 FVYDLATLT--PRARFRYP-GE--GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIK 141 (243)
T ss_dssp EEEETTTTE--EEEEEECS-SC--CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred EEEECCcCc--EEEEEeCC-CC--ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEE
Confidence 999999876 44444321 11 23344677777777668899999999877655554
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.058 Score=50.34 Aligned_cols=156 Identities=13% Similarity=-0.012 Sum_probs=94.5
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
.+..|.+..+++.+++ +. ...|+..++....... ... .... ...++|++....++.+-..
T Consensus 34 d~~~C~~~~~~~~ll~-~~-~~~I~~i~~~g~~~~~---------~~~------~~~~---~~~l~~d~~~~~ly~~D~~ 93 (349)
T 3v64_C 34 DRRSCKALGPEPVLLF-AN-RIDIRQVLPHRSEYTL---------LLN------NLEN---AIALDFHHRRELVFWSDVT 93 (349)
T ss_dssp TSSCEEESSSCCEEEE-EC-BSCEEEECTTSCCEEE---------EEC------SCSC---EEEEEEETTTTEEEEEETT
T ss_pred CCCcccccccCceeEe-ec-ccceEEEeCCCCeeEE---------eec------CCCc---eEEEEEeccccEEEEEecc
Confidence 4566777777554433 33 3457777776522211 001 1111 6779999877666666655
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~ 256 (489)
. +.|..+++.... ....+ .........+++.+.+.+++++-...+.|.+.++....... .....-
T Consensus 94 ~-~~I~r~~~~g~~--~~~~~----------~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~--l~~~~l 158 (349)
T 3v64_C 94 L-DRILRANLNGSN--VEEVV----------STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV--LLWQSL 158 (349)
T ss_dssp T-TEEEEEETTSCS--CEEEE----------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--EECTTC
T ss_pred C-CceEEEecCCCC--ceEEE----------eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE--EEeCCC
Confidence 5 899999984321 10111 11112457889988666466776678899999987543211 222223
Q ss_pred CceeEEEEeecCCEEEEEeC-C-CeEEEEEcCC
Q 037120 257 GTLNSIQLHAENQIIFAAGK-H-GSIYLWDLRG 287 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~-d-g~i~lwd~~~ 287 (489)
.....++++|.+..|+.+.. . +.|..+++..
T Consensus 159 ~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 159 EKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp SCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 45689999997777776654 4 7899888875
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.053 Score=50.64 Aligned_cols=159 Identities=9% Similarity=-0.011 Sum_probs=98.8
Q ss_pred CceeEEEECCCCc-EEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 97 PGISALDFDCKGI-YLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 97 ~~V~~~~fs~~g~-~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
.....++|++.+. ++.+-...+.|..++.+....... .. ..... ...+++.+.+..++++-.
T Consensus 73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~--------~~------~~~~~---p~glavd~~~g~ly~~d~ 135 (349)
T 3v64_C 73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV--------VS------TGLES---PGGLAVDWVHDKLYWTDS 135 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE--------EC------SSCSC---CCEEEEETTTTEEEEEET
T ss_pred CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEE--------Ee------CCCCC---ccEEEEecCCCeEEEEcC
Confidence 3478999997554 445555678899998876321110 00 00112 445888887666777766
Q ss_pred cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC-CcEEEEECCCCCcCceeeccC
Q 037120 176 TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH-GVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~ 254 (489)
.. +.|.+.++.... ...+. ...-...+.+++.|.+..++++-... +.|...++....... ....
T Consensus 136 ~~-~~I~~~~~dG~~---~~~l~---------~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~~~~ 200 (349)
T 3v64_C 136 GT-SRIEVANLDGAH---RKVLL---------WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI--IADT 200 (349)
T ss_dssp TT-TEEEEEETTSCS---CEEEE---------CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--SCCS
T ss_pred CC-CeEEEEcCCCCc---eEEEE---------eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEE--EEEC
Confidence 66 899999984221 11111 11223568899999776455665555 789999887533111 1112
Q ss_pred CCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCC
Q 037120 255 SHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRG 287 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~ 287 (489)
.-...+.++++|++..|+.+.. .+.|..+|+..
T Consensus 201 ~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 201 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 2345689999998887777755 78899999875
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.011 Score=61.70 Aligned_cols=72 Identities=10% Similarity=0.066 Sum_probs=49.3
Q ss_pred CeeEEEEe-cCCCcEEEE-EeCCC----cEEEEECCCC-CcCceeeccCCCCceeEEEEeecCCEEEEEeCC-----CeE
Q 037120 213 GLSDLAFS-AVNTSRLIA-SDTHG----VVNIWDRRVG-VLPSLELSTGSHGTLNSIQLHAENQIIFAAGKH-----GSI 280 (489)
Q Consensus 213 ~v~~~~~~-~~~~~~l~s-~s~dg----~i~iwd~~~~-~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~d-----g~i 280 (489)
.+...+|+ |||+ +|+. .+.+| .|+++|+.++ +.. ...+ ......++|+|||+.|+....| ..|
T Consensus 175 ~~~~~~~S~PDG~-~lAy~~~~~G~~~~~l~v~dl~~g~~~l-~~~~---~~~~~~~~WspDg~~l~y~~~d~~~~~~~v 249 (751)
T 2xe4_A 175 DVMEVKPAPPEHD-LVAFSVDMSGNEVYTIEFKRISDPSQTI-ADKV---SGTNGEIVWGPDHTSLFYVTKDETLRENKV 249 (751)
T ss_dssp EEEEEEECTTTTC-EEEEEEESSSSSCEEEEEEETTCTTCCC-CCCE---EEECSCCEECSSTTEEEEEEECTTCCEEEE
T ss_pred EEeeeEecCCCCC-EEEEEEeCCCCceEEEEEEECCCCCEeC-Cccc---cCceeeEEEecCCCEEEEEEECCCCCCCEE
Confidence 57788999 9999 5554 33333 4999999987 521 1111 1224578999999988887664 368
Q ss_pred EEEEcCCCc
Q 037120 281 YLWDLRGGR 289 (489)
Q Consensus 281 ~lwd~~~~~ 289 (489)
+++++.++.
T Consensus 250 ~~~~lgt~~ 258 (751)
T 2xe4_A 250 WRHVMGKLQ 258 (751)
T ss_dssp EEEETTSCG
T ss_pred EEEECCCCc
Confidence 888887764
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.21 Score=52.41 Aligned_cols=195 Identities=8% Similarity=0.056 Sum_probs=113.9
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..|.++..+++|.+.+ |+.+ -|.+||..+........ .+......... .|.++...+++. +-.|+.
T Consensus 263 ~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~-------~~~~~~~l~~~---~i~~i~~D~~g~--lWigt~ 328 (795)
T 4a2l_A 263 NYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSS-------NPVENGSLSQR---SVRSIFMDSQGG--MWLGTY 328 (795)
T ss_dssp SBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECC-------CTTSTTSCSSS---CEEEEEECTTSC--EEEEES
T ss_pred CeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEec-------CCCCCCCCCCC---cEEEEEEeCCcC--EEEEEC
Confidence 4599999999987655 4555 58889887644332110 00000011112 288898888764 444554
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc---
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST--- 253 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--- 253 (489)
+ +-|..|+.....- ..+..... ...-....|.++...++|. |..|+.++-|..||..++. ......
T Consensus 329 ~-~Gl~~~~~~~~~~---~~~~~~~~---~~~l~~~~V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~--~~~~~~~~~ 397 (795)
T 4a2l_A 329 F-GGLNYYHPIRNRF---KNIRNIPY---KNSLSDNVVSCIVEDKDKN--LWIGTNDGGLNLYNPITQR--FTSYTLQED 397 (795)
T ss_dssp S-SCEEEECGGGGSS---EEECCCTT---SSSCSCSSEEEEEECTTSC--EEEEESSSCEEEECTTTCC--EEEECCC--
T ss_pred C-CCeEEeCCCcccc---eEEcCCCC---CCCCCCCeeEEEEECCCCC--EEEEECCCCeEEEcCCCCc--EEEEecCCC
Confidence 4 6788888632210 01100000 0011235689998887776 6668878889999988754 221111
Q ss_pred -----CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeec-CCccCCCCeeEEEeCCCCcce
Q 037120 254 -----GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHN-HKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 254 -----~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~-~~~~~~~~v~~l~~~~~~~~i 317 (489)
-....|.++...+++..|.+|+.++-|.+||..+++. ..+.. ........|.++...++|...
T Consensus 398 ~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~-~~~~~~~~~l~~~~v~~i~~d~~g~lw 466 (795)
T 4a2l_A 398 ESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV-ENFNQRNSQLVNENVYAILPDGEGNLW 466 (795)
T ss_dssp ----CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE-EEECTTTSCCSCSCEEEEEECSSSCEE
T ss_pred CcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE-EEeecCCCCcCCCeeEEEEECCCCCEE
Confidence 1235789999998888567777777799999987653 22221 000001238888888887654
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.039 Score=52.36 Aligned_cols=159 Identities=9% Similarity=-0.003 Sum_probs=97.7
Q ss_pred CceeEEEECCCC-cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 97 PGISALDFDCKG-IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 97 ~~V~~~~fs~~g-~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
.....++|++.+ .++.+-...+.|..++.+....... . ...... ...+++.+.+..++++-.
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~--------~------~~~~~~---p~glavd~~~g~lY~~d~ 178 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEV--------V------STGLES---PGGLAVDWVHDKLYWTDS 178 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEE--------E------CSSCSC---CCCEEEETTTTEEEEEET
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEE--------E------eCCCCC---ccEEEEEeCCCeEEEEcC
Confidence 447889999754 4555555678899998876321110 0 000112 334888877666777766
Q ss_pred cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC-CcEEEEECCCCCcCceeeccC
Q 037120 176 TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH-GVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~ 254 (489)
.. +.|.+.++... . ...+. .........|++.|.+..++++-... +.|...++....... ....
T Consensus 179 ~~-~~I~~~~~dg~--~-~~~l~---------~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~~~~ 243 (386)
T 3v65_B 179 GT-SRIEVANLDGA--H-RKVLL---------WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRI--IADT 243 (386)
T ss_dssp TT-TEEEECBTTSC--S-CEEEE---------CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--EECS
T ss_pred CC-CeEEEEeCCCC--c-eEEee---------cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEE--EEEC
Confidence 55 78888887321 1 11111 11223568899999777455555555 788888887543211 2222
Q ss_pred CCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCC
Q 037120 255 SHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRG 287 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~ 287 (489)
.-...+.|+|+|++..|+.+.. .+.|..+|+..
T Consensus 244 ~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG 277 (386)
T 3v65_B 244 HLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDG 277 (386)
T ss_dssp SCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTS
T ss_pred CCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCC
Confidence 2344689999998887777755 78899999864
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.33 E-value=0.03 Score=57.39 Aligned_cols=79 Identities=15% Similarity=0.264 Sum_probs=53.3
Q ss_pred eEEEEecCCCcEEEEEeCCC-------------------cEEEEECCCCCcCceeecc-CCC-------CceeEEEEeec
Q 037120 215 SDLAFSAVNTSRLIASDTHG-------------------VVNIWDRRVGVLPSLELST-GSH-------GTLNSIQLHAE 267 (489)
Q Consensus 215 ~~~~~~~~~~~~l~s~s~dg-------------------~i~iwd~~~~~~~~~~~~~-~h~-------~~v~~~~~~p~ 267 (489)
..+++.|+.. +++.++.++ .|..+|.++++.. .+... .|. .+.....+..+
T Consensus 233 ~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~-W~~~~~~~~~wd~~~~~~~~~~d~~~~ 310 (668)
T 1kv9_A 233 DSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLA-WHYQVTPGDSWDFTATQQITLAELNID 310 (668)
T ss_dssp SCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEE-EEEESSTTCCSCCCCCSCEEEEEEEET
T ss_pred cceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCcee-eEeecCCCccccccCCCCcEEEEeccC
Confidence 3578888877 777777665 3999999998743 22211 222 23333334446
Q ss_pred CC---EEEEEeCCCeEEEEEcCCCcccceee
Q 037120 268 NQ---IIFAAGKHGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 268 ~~---~l~~~~~dg~i~lwd~~~~~~~~~~~ 295 (489)
|+ .++.++.+|.++++|..+|+.+..++
T Consensus 311 G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~ 341 (668)
T 1kv9_A 311 GKPRKVLMQAPKNGFFYVLDRTNGKLISAEK 341 (668)
T ss_dssp TEEEEEEEECCTTSEEEEEETTTCCEEEEEE
T ss_pred CcEEEEEEEECCCCEEEEEECCCCCEecccc
Confidence 65 67888889999999999998765544
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.013 Score=56.50 Aligned_cols=158 Identities=15% Similarity=0.055 Sum_probs=92.9
Q ss_pred ceeEEEECC-CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 98 GISALDFDC-KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 98 ~V~~~~fs~-~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
....++++| ++..|..+...+.|+++|........ +.. .... ...++|++++..++++...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~---------~~~------~~~~---P~~ia~d~~G~~lyvad~~ 199 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST---------VYS------GLSK---VRTICWTHEADSMIITNDQ 199 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE---------EEC------CCSC---EEEEEECTTSSEEEEEECC
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE---------Eec------CCCC---cceEEEeCCCCEEEEEeCC
Confidence 467889998 34455555555889999987733222 111 1111 6679999998756665542
Q ss_pred CC--C-EEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEec-CCCcEEEEEeCCCcEEEEECCCCCcCceeec
Q 037120 177 RS--N-VVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSA-VNTSRLIASDTHGVVNIWDRRVGVLPSLELS 252 (489)
Q Consensus 177 d~--g-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 252 (489)
+. . .+.+.+. .+.......+. . ......+++.| ++. ++++-..++.|..+|...+....+...
T Consensus 200 ~~~~~~~v~~~~~-~g~~~~~~~l~-------~----~~~p~giavdp~~g~-lyv~d~~~~~V~~~~~~~~~~~~~~~~ 266 (430)
T 3tc9_A 200 NNNDRPNNYILTR-ESGFKVITELT-------K----GQNCNGAETHPINGE-LYFNSWNAGQVFRYDFTTQETTPLFTI 266 (430)
T ss_dssp SCTTSEEEEEEEG-GGTSCSEEEEE-------E----CSSCCCEEECTTTCC-EEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred CCcccceEEEEeC-CCceeeeeeec-------c----CCCceEEEEeCCCCE-EEEEECCCCEEEEEECCCCcEEEEEEc
Confidence 20 1 3333443 22111111111 1 12456788999 555 666666788999999886542111111
Q ss_pred cCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCC
Q 037120 253 TGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRG 287 (489)
Q Consensus 253 ~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~ 287 (489)
........++|+|++++|+.+.. .+.|..+|...
T Consensus 267 -~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 267 -QDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp -SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred -CCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 12234678999999996666654 88999988763
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.078 Score=46.76 Aligned_cols=225 Identities=12% Similarity=0.111 Sum_probs=117.1
Q ss_pred cCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc-CCCCceeEEEEeecCCEEEEEeCCCeEEEEEc
Q 037120 207 GSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST-GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDL 285 (489)
Q Consensus 207 ~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~ 285 (489)
+.+-...+..++|.|++..+++....++.|...|.. ++ .++.+. .-......|++.+++.++++.-.++.+.++++
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~--v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GD--LIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CC--EEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CC--EEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 355556799999999877355556688899999987 55 343332 22245778899988887666545889999998
Q ss_pred CCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeecccee-
Q 037120 286 RGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVS- 364 (489)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~- 364 (489)
.....+.... .+.+. + ...........++++|.+..+.+....+. ..++... +...
T Consensus 99 ~~~~~i~~~~-----------~~~~~--------~--~~~~~N~g~EGLA~d~~~~~L~va~E~~p-~~i~~~~-g~~~~ 155 (255)
T 3qqz_A 99 TPNSEVKILK-----------KIKIP--------L--QESPTNCGFEGLAYSRQDHTFWFFKEKNP-IEVYKVN-GLLSS 155 (255)
T ss_dssp CTTCCEEEEE-----------EEECC--------C--SSCCCSSCCEEEEEETTTTEEEEEEESSS-EEEEEEE-STTCS
T ss_pred CCCCeeeeee-----------eeccc--------c--ccccccCCcceEEEeCCCCEEEEEECcCC-ceEEEEc-ccccC
Confidence 7643211111 11000 0 00011223455566666555555433322 1122211 1000
Q ss_pred ---eecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhccc
Q 037120 365 ---HVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKE 441 (489)
Q Consensus 365 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (489)
++... ..+.. .........+++.|..+.+++...+.+.|.++|.... .+..+.........
T Consensus 156 ~~l~i~~~-~~~~~----~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-----------~~~~~~L~~g~~~l 219 (255)
T 3qqz_A 156 NELHISKD-KALQR----QFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-----------VIGEMSLTKGSRGL 219 (255)
T ss_dssp SCCEEEEC-HHHHH----TCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-----------EEEEEECSTTGGGC
T ss_pred Cceeeecc-hhhcc----ccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-----------EEEEEEcCCccCCc
Confidence 00000 00000 0001123445666776788887788889999997643 22222211000000
Q ss_pred CCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 442 NRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 442 ~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
. .--..--.|+|.|+|+..++ ++-..+.+|..
T Consensus 220 ~---~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 220 S---HNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp S---SCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred c---cccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 0 00123478999999987666 55556666643
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.22 Score=51.75 Aligned_cols=145 Identities=10% Similarity=0.062 Sum_probs=87.7
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
+.+|+|.+....++++-... +.|+.+++....... .....+ .........|++.+.+.+++++-...+.|.
T Consensus 426 ~~gl~~d~~~~~lY~sD~~~-~~I~~~~l~g~~~~~-----~~~~vi---~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~ 496 (791)
T 3m0c_C 426 VVALDTEVASNRIYWSDLSQ-RMICSTQLDRAHGVS-----SYDTVI---SRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 496 (791)
T ss_dssp EEEEEEETTTTEEEEEETTT-TEEEEEEC-------------CEEEE---CSSCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred eEEEeecccCCeeEEeeccc-eeEEEEeccCCCCCc-----ceeEEE---ecCCCCcceeeeeecCCcEEEEecCCCeEE
Confidence 67899998766566666655 899999984321100 000010 112235678999988875777777889999
Q ss_pred EEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC--CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCc
Q 037120 238 IWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK--HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLE 315 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~--dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 315 (489)
+.++....... .....-.....|+++|.+.+|+.+.. .+.|...++........+...-.. .+.|++++.+.
T Consensus 497 v~~ldG~~~~~--l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~----P~GLavD~~~~ 570 (791)
T 3m0c_C 497 VADTKGVKRKT--LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW----PNGITLDLLSG 570 (791)
T ss_dssp EEETTSSSEEE--EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSC----EEEEEEETTTT
T ss_pred EEeCCCCeEEE--EEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCC----ceEEEEecCCC
Confidence 99997543211 22223345789999998777777653 378999988753322222222223 67777776554
Q ss_pred ce
Q 037120 316 KI 317 (489)
Q Consensus 316 ~i 317 (489)
.|
T Consensus 571 ~L 572 (791)
T 3m0c_C 571 RL 572 (791)
T ss_dssp EE
T ss_pred eE
Confidence 44
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.28 Score=51.40 Aligned_cols=184 Identities=11% Similarity=0.090 Sum_probs=103.1
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..|.+|..+++|.+.+ |+.+| +..||..+....... .... ..... |.++...+++. +.+ ++.
T Consensus 88 n~I~~i~~d~~g~lWi-gT~~G-l~~yd~~~~~f~~~~---------~~~~--~~~~~---i~~i~~d~~g~-lwi-~t~ 149 (795)
T 4a2l_A 88 DISRIVKTDSQGRVWI-GTRDG-LSRYDEEKDIFQNFF---------YEKN--GKHLQ---VNGIEEISPEQ-LLI-STP 149 (795)
T ss_dssp SCEEEEEECTTSCEEE-EESSC-EEEEETTTTEEEEEC---------CEET--TEECC---CCEEEEEETTE-EEE-EET
T ss_pred cceeEEEECCCCCEEE-EeCCc-hheeCCCCCeEEecc---------cccc--CCCce---EEEEEECCCCC-EEE-EEC
Confidence 4599999999997665 55555 788998764332210 0000 00001 67787777763 444 442
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCc-ccC-eeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee-cc
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDV-QKG-LSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL-ST 253 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h-~~~-v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~ 253 (489)
+-|..||.... .+.... .++ ... |.++...+++. +..++.++.|..||..+++. ... ..
T Consensus 150 --~gl~~~~~~~~------~~~~~~------~~~~~~~~i~~i~~d~~g~--lwigt~~~Gl~~~~~~~~~~--~~~~~~ 211 (795)
T 4a2l_A 150 --EGLIMFDIKES------KFIDDS------FSTAMHKTIASTLYRQGDQ--IYIGTSTDGLYTYSITQKTF--EKVIPI 211 (795)
T ss_dssp --TEEEEEETTTT------EEECSS------SCHHHHTCCEEEEEEETTE--EEEEESSSCEEEEETTTCCE--EECC--
T ss_pred --CceEEEECCCC------EEEecc------CCCCCCcceEEEEECCCCC--EEEEECCCCEEEEeCCCCeE--EEecCC
Confidence 46888987321 111110 011 123 88888877775 44466655689999877552 211 11
Q ss_pred CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecC---CccCCCCeeEEEeCCCCcce
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNH---KEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~---~~~~~~~v~~l~~~~~~~~i 317 (489)
.....|.++...+++.+.+ ++.++-|.+||..+++........ .......|.++...++|...
T Consensus 212 ~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW 277 (795)
T 4a2l_A 212 LGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW 277 (795)
T ss_dssp --CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEE
T ss_pred CCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEE
Confidence 2346788999888877554 444444888998775432111110 00001338999988888655
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.15 Score=49.12 Aligned_cols=137 Identities=11% Similarity=0.125 Sum_probs=74.7
Q ss_pred eeEEEeeC-CCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeC-CC-
Q 037120 158 LDAVRWNL-ANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT-HG- 234 (489)
Q Consensus 158 V~~v~~~~-~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~-dg- 234 (489)
...|+|+| +.. .|..+... +.|+.+|+... .+ .. + .........|+|.++++ .|+.+.. ++
T Consensus 139 P~~lavdp~~~g-~Lyv~d~~-~~I~~id~~~~-----~v-~~---~----~~~~~~P~~ia~d~~G~-~lyvad~~~~~ 202 (430)
T 3tc9_A 139 AVWLSFDPKNHN-HLYLVGEQ-HPTRLIDFEKE-----YV-ST---V----YSGLSKVRTICWTHEAD-SMIITNDQNNN 202 (430)
T ss_dssp CCEEEEETTEEE-EEEEEEBT-EEEEEEETTTT-----EE-EE---E----ECCCSCEEEEEECTTSS-EEEEEECCSCT
T ss_pred CCEEEECCCCCC-eEEEEeCC-CcEEEEECCCC-----EE-EE---E----ecCCCCcceEEEeCCCC-EEEEEeCCCCc
Confidence 45699998 343 45555544 78888988321 11 11 1 11223678899999998 5555543 22
Q ss_pred ---cEEEEECCCCCcCceeeccCCCCceeEEEEee-cCCEEEEEeCCCeEEEEEcCCCcccceeec-CCccCCCCeeEEE
Q 037120 235 ---VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHA-ENQIIFAAGKHGSIYLWDLRGGRTSAPFHN-HKEVCHLPLTSLK 309 (489)
Q Consensus 235 ---~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~-~~~~~~~~v~~l~ 309 (489)
.+.+.+. .+.......+. .......++++| ++.++++-..++.|..+|..++........ .... -..++
T Consensus 203 ~~~~v~~~~~-~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~----P~gia 276 (430)
T 3tc9_A 203 DRPNNYILTR-ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGW----EFHIQ 276 (430)
T ss_dssp TSEEEEEEEG-GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSC----CEEEE
T ss_pred ccceEEEEeC-CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCc----ceeEE
Confidence 2333443 33211111111 123456788999 565554545588999999986543111111 1112 46777
Q ss_pred eCCCCcc
Q 037120 310 LASMLEK 316 (489)
Q Consensus 310 ~~~~~~~ 316 (489)
|+|+|..
T Consensus 277 ~~pdG~~ 283 (430)
T 3tc9_A 277 FHPSGNY 283 (430)
T ss_dssp ECTTSSE
T ss_pred EcCCCCE
Confidence 7777763
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.15 E-value=0.18 Score=47.91 Aligned_cols=143 Identities=10% Similarity=0.052 Sum_probs=87.2
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCC--CCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCc
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYIS--DEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGV 235 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~ 235 (489)
+..++|++....++.+-... +.|..+++.... .....++ .........+++.+.+.+++++-...+.
T Consensus 114 ~~~l~~d~~~~~lywsD~~~-~~I~~~~~~g~~~~~~~~~~~----------~~~~~~p~glavD~~~~~lY~~d~~~~~ 182 (400)
T 3p5b_L 114 VVALDTEVASNRIYWSDLSQ-RMICSTQLDRAHGVSSYDTVI----------SRDIQAPDGLAVDWIHSNIYWTDSVLGT 182 (400)
T ss_dssp EEEEEEETTTTEEEEEETTT-TEEEEEEC------CCCEEEE----------CSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred ceEEeeeeccCceEEEecCC-CeEEEEEcccCCCCCcceEEE----------eCCCCCcccEEEEecCCceEEEECCCCe
Confidence 77899998776566666555 899999984321 0110111 1122357789998866646666667889
Q ss_pred EEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC--CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCC
Q 037120 236 VNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK--HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASM 313 (489)
Q Consensus 236 i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~--dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 313 (489)
|.+.|+..... .......-.....|+++|.+.+|+.+.. .+.|...++........+...-.. .+.|+++++
T Consensus 183 I~~~~~~g~~~--~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~----P~glavd~~ 256 (400)
T 3p5b_L 183 VSVADTKGVKR--KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW----PNGITLDLL 256 (400)
T ss_dssp EEEECTTTCSE--EEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSC----EEEEEEETT
T ss_pred EEEEeCCCCce--EEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCc----eEEEEEEeC
Confidence 99999875432 1122222345789999998777777653 478888888753322222221223 677888876
Q ss_pred Ccce
Q 037120 314 LEKI 317 (489)
Q Consensus 314 ~~~i 317 (489)
+..+
T Consensus 257 ~~~l 260 (400)
T 3p5b_L 257 SGRL 260 (400)
T ss_dssp TTEE
T ss_pred CCEE
Confidence 6544
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.037 Score=50.56 Aligned_cols=168 Identities=10% Similarity=0.003 Sum_probs=86.7
Q ss_pred ceeEEEECCCCcEEEEEecC-C-eEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 98 GISALDFDCKGIYLVSATRS-G-CLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~d-g-~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
....++++++|+++++.... + .|..+|..+....... .. +...+ ...++..+.+ .++++..
T Consensus 73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~------~~-~~~~~---------~~g~~~~~~~-~~~v~d~ 135 (306)
T 2p4o_A 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLL------TL-PDAIF---------LNGITPLSDT-QYLTADS 135 (306)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEE------EC-TTCSC---------EEEEEESSSS-EEEEEET
T ss_pred CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEE------eC-CCccc---------cCcccccCCC-cEEEEEC
Confidence 47899999999977665443 2 4666666553321100 00 00001 2234444443 3455444
Q ss_pred cCCCEEEEEEeccCCCCCceeeeeceeee-eecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCC-CCcCceeecc
Q 037120 176 TRSNVVSIYDIGYISDEPVEVLKTRRSVT-VVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRV-GVLPSLELST 253 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~ 253 (489)
.+ +.|.++|...... .+........ ....+.-...+.| ++++..++++-...+.|..+|+.. ++....+.+.
T Consensus 136 ~~-g~i~~~d~~~~~~---~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~ 209 (306)
T 2p4o_A 136 YR-GAIWLIDVVQPSG---SIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV 209 (306)
T ss_dssp TT-TEEEEEETTTTEE---EEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE
T ss_pred CC-CeEEEEeCCCCcE---eEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe
Confidence 45 8888888732100 1110000000 0001111234555 788874556666788999999875 3211111111
Q ss_pred CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT 290 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~ 290 (489)
. ......++++++|++.++....+.|.++|.. ++.
T Consensus 210 ~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~ 244 (306)
T 2p4o_A 210 E-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RST 244 (306)
T ss_dssp E-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCE
T ss_pred c-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCE
Confidence 1 1345678999999865555557889999875 443
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.16 Score=46.48 Aligned_cols=143 Identities=10% Similarity=0.073 Sum_probs=85.5
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCC-CCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISD-EPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVV 236 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i 236 (489)
..+++|++.+..++++-..+ +.|..+++..... .....+ . ...-.....+++.+.+.+++++-...+.|
T Consensus 32 p~g~~~d~~~~~ly~~D~~~-~~I~~~~~~g~~~~~~~~~~-----~----~~~~~~p~glavd~~~~~ly~~d~~~~~I 101 (316)
T 1ijq_A 32 VVALDTEVASNRIYWSDLSQ-RMICSTQLDRAHGVSSYDTV-----I----SRDIQAPDGLAVDWIHSNIYWTDSVLGTV 101 (316)
T ss_dssp EEEEEEETTTTEEEEEETTT-TEEEEEEC--------CEEE-----E----CSSCSCCCEEEEETTTTEEEEEETTTTEE
T ss_pred eEEEEEEeCCCEEEEEECCC-CcEEEEECCCCCCCcccEEE-----E----eCCCCCcCEEEEeecCCeEEEEECCCCEE
Confidence 67799998776677776655 8999999843100 000111 0 11112457889987666466666678899
Q ss_pred EEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-C-CeEEEEEcCCCcccceee-cCCccCCCCeeEEEeCCC
Q 037120 237 NIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-H-GSIYLWDLRGGRTSAPFH-NHKEVCHLPLTSLKLASM 313 (489)
Q Consensus 237 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-d-g~i~lwd~~~~~~~~~~~-~~~~~~~~~v~~l~~~~~ 313 (489)
.+.|+..... .......-.....++++|.+..++.+.. . +.|..+++.. .....+. ..-.. ...|+++++
T Consensus 102 ~~~~~~g~~~--~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG-~~~~~~~~~~~~~----P~gla~d~~ 174 (316)
T 1ijq_A 102 SVADTKGVKR--KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTENIQW----PNGITLDLL 174 (316)
T ss_dssp EEEETTSSSE--EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CCEEEEECSSCSC----EEEEEEETT
T ss_pred EEEeCCCCce--EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCC-CCeEEEEECCCCC----ceEEEEecc
Confidence 9999875331 1122222346789999997777776654 3 7888888764 3322222 11122 567888876
Q ss_pred Ccce
Q 037120 314 LEKI 317 (489)
Q Consensus 314 ~~~i 317 (489)
+..+
T Consensus 175 ~~~l 178 (316)
T 1ijq_A 175 SGRL 178 (316)
T ss_dssp TTEE
T ss_pred CCEE
Confidence 6544
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.14 Score=46.72 Aligned_cols=167 Identities=7% Similarity=0.061 Sum_probs=97.6
Q ss_pred eeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCcCceeeccC----CC--CceeEEEE---eecCCEEEEEe--------
Q 037120 214 LSDLAFSAVNTSRLIASD-THGVVNIWDRRVGVLPSLELSTG----SH--GTLNSIQL---HAENQIIFAAG-------- 275 (489)
Q Consensus 214 v~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~----h~--~~v~~~~~---~p~~~~l~~~~-------- 275 (489)
-.+++|++... .|+.++ ..++|..||...+....+ .+.. .. ..+..|.| .|+++++++..
T Consensus 15 PE~~~wd~~~g-~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 15 PEDTIYDRTRQ-VFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CSCEEEETTTT-EEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTT
T ss_pred CcCccCcCCCC-EEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccc
Confidence 34689998777 666666 899999999875542222 1211 11 13579999 68887777543
Q ss_pred -----CCCeEEEEEcC---CCcccceee--cCC-c------cCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCC
Q 037120 276 -----KHGSIYLWDLR---GGRTSAPFH--NHK-E------VCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDP 338 (489)
Q Consensus 276 -----~dg~i~lwd~~---~~~~~~~~~--~~~-~------~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p 338 (489)
.+..|..||+. +++.+.... ... + ........++..++|....+-.... .. -+.++|
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~----~~--I~rV~p 166 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGM----PA--IARVSA 166 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESS----CE--EEEECT
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCC----Ce--EEEEeC
Confidence 26789999999 777643332 100 0 0001267888888886554311110 11 235667
Q ss_pred CCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCC
Q 037120 339 SCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPG 416 (489)
Q Consensus 339 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~ 416 (489)
++..+..+..+.. +.. .......+.+.|++..+++..+ ++.|..+|+...
T Consensus 167 dG~~~~~~~~~~~---------------------~~~------~~~G~nGIv~~pdg~~Liv~~~-~g~L~~fD~~~p 216 (334)
T 2p9w_A 167 DGKTVSTFAWESG---------------------NGG------QRPGYSGITFDPHSNKLIAFGG-PRALTAFDVSKP 216 (334)
T ss_dssp TSCCEEEEEECCC---------------------CSS------SCCSCSEEEEETTTTEEEEESS-SSSEEEEECSSS
T ss_pred CCCEEeeeeecCC---------------------Ccc------cccCcceEEEeCCCCEEEEEcC-CCeEEEEcCCCC
Confidence 7764432221110 000 0122345788888888888877 999999998743
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.036 Score=51.03 Aligned_cols=155 Identities=12% Similarity=0.024 Sum_probs=90.2
Q ss_pred ceeEEEECC-CCcEEEEEec-----------------CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCcee
Q 037120 98 GISALDFDC-KGIYLVSATR-----------------SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLD 159 (489)
Q Consensus 98 ~V~~~~fs~-~g~~la~g~~-----------------dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~ 159 (489)
....+++++ +|++.++-.. +|.|..||..+..... ..... .. ..
T Consensus 127 ~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~---------~~~~~------~~---p~ 188 (322)
T 2fp8_A 127 WLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL---------LLKEL------HV---PG 188 (322)
T ss_dssp CEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE---------EEEEE------SC---CC
T ss_pred ccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE---------eccCC------cc---Cc
Confidence 367899999 9987776432 3678888876532211 00101 11 34
Q ss_pred EEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeC-------
Q 037120 160 AVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT------- 232 (489)
Q Consensus 160 ~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~------- 232 (489)
.++|+|++..++++-..+ +.|.+|++....... ...+. .+.+ ...+++.++|. +.++...
T Consensus 189 gia~~~dg~~lyv~d~~~-~~I~~~~~~~~~~~~------~~~~~-~~~g----P~gi~~d~~G~-l~va~~~~~~~~~~ 255 (322)
T 2fp8_A 189 GAEVSADSSFVLVAEFLS-HQIVKYWLEGPKKGT------AEVLV-KIPN----PGNIKRNADGH-FWVSSSEELDGNMH 255 (322)
T ss_dssp EEEECTTSSEEEEEEGGG-TEEEEEESSSTTTTC------EEEEE-ECSS----EEEEEECTTSC-EEEEEEEETTSSTT
T ss_pred ceEECCCCCEEEEEeCCC-CeEEEEECCCCcCCc------cceEE-eCCC----CCCeEECCCCC-EEEEecCccccccc
Confidence 599999987566665655 899999985321111 11111 1122 67789999998 6666544
Q ss_pred ---CCcEEEEECCCCCcCceeeccCC----CCceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 037120 233 ---HGVVNIWDRRVGVLPSLELSTGS----HGTLNSIQLHAENQIIFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 233 ---dg~i~iwd~~~~~~~~~~~~~~h----~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~ 287 (489)
.+.|..+|.. ++ .+..+... -..++++++ .++.+.++....+.|..+++..
T Consensus 256 ~~~~~~v~~~d~~-G~--~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 256 GRVDPKGIKFDEF-GN--ILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp SCEEEEEEEECTT-SC--EEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCCccEEEEECCC-CC--EEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 4678888864 34 23333221 234666766 4555444444588999999864
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.19 Score=46.05 Aligned_cols=163 Identities=13% Similarity=0.004 Sum_probs=95.5
Q ss_pred CceeEEEECCCC-cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 97 PGISALDFDCKG-IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 97 ~~V~~~~fs~~g-~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
....+++|++++ .++.+-...+.|..++........ .... ........ ...+++.+.+..++++-.
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~--------~~~~--~~~~~~~~---p~glavd~~~~~ly~~d~ 96 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS--------SYDT--VISRDIQA---PDGLAVDWIHSNIYWTDS 96 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC----------------CEE--EECSSCSC---CCEEEEETTTTEEEEEET
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCc--------ccEE--EEeCCCCC---cCEEEEeecCCeEEEEEC
Confidence 457899999865 455555567899999887511000 0000 00001112 455888876655766666
Q ss_pred cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC-CcEEEEECCCCCcCceeeccC
Q 037120 176 TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH-GVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~~ 254 (489)
.+ +.|.+.|+... . ...+. ...-.....+++.|.+..++++.... +.|...++....... ....
T Consensus 97 ~~-~~I~~~~~~g~--~-~~~~~---------~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~--~~~~ 161 (316)
T 1ijq_A 97 VL-GTVSVADTKGV--K-RKTLF---------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE 161 (316)
T ss_dssp TT-TEEEEEETTSS--S-EEEEE---------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--EECS
T ss_pred CC-CEEEEEeCCCC--c-eEEEE---------ECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE--EEEC
Confidence 55 89999998321 1 11111 11123568899999777355554443 788888876432111 1112
Q ss_pred CCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCC
Q 037120 255 SHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRG 287 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~ 287 (489)
.-...+.++++|++..|+.+.. .+.|..+|+..
T Consensus 162 ~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg 195 (316)
T 1ijq_A 162 NIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 195 (316)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCCceEEEEeccCCEEEEEECCCCeEEEEecCC
Confidence 2345679999998888877755 78999999874
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.28 Score=47.76 Aligned_cols=117 Identities=14% Similarity=0.233 Sum_probs=66.3
Q ss_pred eeEEEeeCC-CCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEE-------ecCCCcEEEE
Q 037120 158 LDAVRWNLA-NQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAF-------SAVNTSRLIA 229 (489)
Q Consensus 158 V~~v~~~~~-~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~-------~~~~~~~l~s 229 (489)
...|+|.|. ...++++.... +.|++.|+... .+..... ...........|+| .+++. .|+.
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~-~~i~~ID~~~~-----~v~~l~~----~~~~~~~~p~~ia~~~~~~~~d~~G~-~lyv 209 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGH-KAIQLIDLKNR-----MLSSPLN----INTIPTNRIRSIAFNKKIEGYADEAE-YMIV 209 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETE-EEEEEEETTTT-----EEEEEEC----CTTSSCSBEEEEEECCCBTTTBCTTC-EEEE
T ss_pred CCEEEEccCCCCEEEEEECCC-CeEEEEECCCC-----EEEEEEc----cCccccCCCcEEEEeecccccCCCCC-EEEE
Confidence 456999984 44466655543 67888887321 1111111 01112346889999 99998 5555
Q ss_pred EeCCC-------cEEEEECCC-CCcCc---eeeccCCCCceeEEEEeecCCEEEEEe-CCCeEEEEEcC
Q 037120 230 SDTHG-------VVNIWDRRV-GVLPS---LELSTGSHGTLNSIQLHAENQIIFAAG-KHGSIYLWDLR 286 (489)
Q Consensus 230 ~s~dg-------~i~iwd~~~-~~~~~---~~~~~~h~~~v~~~~~~p~~~~l~~~~-~dg~i~lwd~~ 286 (489)
+...+ .|.+.+... +.... ...... -.....++++|++..|+.+. .++.|..+|+.
T Consensus 210 ad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 210 AIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp EECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred EeCCCCCcccCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 55433 266776443 12110 011111 12345788999666666655 48899999997
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.22 Score=46.65 Aligned_cols=70 Identities=7% Similarity=0.110 Sum_probs=46.3
Q ss_pred CCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeec
Q 037120 222 VNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 222 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
++. .++.++.++.|..+|..+++.. .+ ............. .+..+++++.++.|..+|.++|+.+..+..
T Consensus 102 ~~~-~v~v~~~~g~l~a~d~~tG~~~-W~-~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~ 171 (376)
T 3q7m_A 102 SGG-HVYIGSEKAQVYALNTSDGTVA-WQ-TKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGAVKWTVNL 171 (376)
T ss_dssp ETT-EEEEEETTSEEEEEETTTCCEE-EE-EECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred eCC-EEEEEcCCCEEEEEECCCCCEE-EE-EeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCcEEEEEeC
Confidence 344 6788888999999999988732 21 1111111111222 245788888899999999999987655543
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.3 Score=47.02 Aligned_cols=155 Identities=16% Similarity=0.161 Sum_probs=89.1
Q ss_pred ceeEEEECCC---CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 98 GISALDFDCK---GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 98 ~V~~~~fs~~---g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
....++|+|+ |.++++ ...+.|+.+|..+...... ... ... ...++|++++. ++++.
T Consensus 140 ~P~gvavd~~s~~g~Lyv~-D~~~~I~~id~~~g~v~~~---------~~~------~~~---P~giavd~dG~-lyVad 199 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWV-GQRDAFRHVDFVNQYVDIK---------TTN------IGQ---CADVNFTLNGD-MVVVD 199 (433)
T ss_dssp CCCEEEECTTTTTCEEEEE-CBTSCEEEEETTTTEEEEE---------CCC------CSC---EEEEEECTTCC-EEEEE
T ss_pred CCceEEEccccCCCEEEEE-eCCCCEEEEECCCCEEEEe---------ecC------CCC---ccEEEECCCCC-EEEEc
Confidence 4678999985 555444 3338899999866433221 111 111 67799999987 66665
Q ss_pred ecC--CCE-EEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEec-CCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 175 STR--SNV-VSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSA-VNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 175 ~~d--~g~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
... ... +...+.... ......+. .-.....+++.| ++. ++++-..++.|+.+|..++... ..
T Consensus 200 ~~~~~~~~gv~~~~~~~~-~~~~~~~~-----------~~~~P~giavd~~~G~-lyv~d~~~~~V~~~d~~~g~~~-~~ 265 (433)
T 4hw6_A 200 DQSSDTNTGIYLFTRASG-FTERLSLC-----------NARGAKTCAVHPQNGK-IYYTRYHHAMISSYDPATGTLT-EE 265 (433)
T ss_dssp CCSCTTSEEEEEECGGGT-TCCEEEEE-----------ECSSBCCCEECTTTCC-EEECBTTCSEEEEECTTTCCEE-EE
T ss_pred CCCCcccceEEEEECCCC-eecccccc-----------ccCCCCEEEEeCCCCe-EEEEECCCCEEEEEECCCCeEE-EE
Confidence 411 012 333332111 01000111 112456688999 555 6666667789999998866520 11
Q ss_pred ecc-CCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcC
Q 037120 251 LST-GSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLR 286 (489)
Q Consensus 251 ~~~-~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~ 286 (489)
... +....-..++|+|+++.|+.+.. .+.|+.+|..
T Consensus 266 ~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 266 EVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp EEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred EeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 111 11222346999999997666655 7899998876
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.082 Score=49.82 Aligned_cols=122 Identities=7% Similarity=0.148 Sum_probs=79.0
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCce-----eeeeceeeeee-c-CCcccCeeEEEEecCCCc--EEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVE-----VLKTRRSVTVV-G-SDVQKGLSDLAFSAVNTS--RLI 228 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~-----~~~~~~~~~~~-~-~~h~~~v~~~~~~~~~~~--~l~ 228 (489)
|..+..||+|. +|+..+ +..|.|-.+......... .++. +.+... . .....+|..+.|||-+.+ .|+
T Consensus 68 i~qlvlSpsG~-lLAl~g--~~~V~Vv~LP~~~~~~~~~~~~~~~q~-~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LV 143 (452)
T 3pbp_A 68 TFHVISSTSGD-LLCLFN--DNEIFVMEVPWGYSNVEDVSIQDAFQI-FHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIV 143 (452)
T ss_dssp TCEEEECTTSS-EEEEEC--SSEEEEEECCTTCSCCCCHHHHHTTEE-EEEEGGGCC--CCCCEEEEEECTTBGGGCEEE
T ss_pred eeEEEECCCCC-EEEEec--CCeEEEEEecCccccCcccccccccce-eEEEcCCcccCCCCceeEEEeccccCCCCeEE
Confidence 67799999986 666666 479999999633211110 1111 111110 0 113568999999997753 899
Q ss_pred EEeCCCcEEEEECCCCC-cCc-eee------ccCCCCceeEEEEeecCCEEEEEe--CCCeEEEE
Q 037120 229 ASDTHGVVNIWDRRVGV-LPS-LEL------STGSHGTLNSIQLHAENQIIFAAG--KHGSIYLW 283 (489)
Q Consensus 229 s~s~dg~i~iwd~~~~~-~~~-~~~------~~~h~~~v~~~~~~p~~~~l~~~~--~dg~i~lw 283 (489)
+-..|+.|++||+.... .|. ++. .......|.+++|.+++-.|++.+ ..|.|+-.
T Consensus 144 VLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 144 VLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp EEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred EEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 99999999999998632 222 110 112236788999999888888866 67888754
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.34 Score=46.58 Aligned_cols=140 Identities=11% Similarity=0.062 Sum_probs=74.6
Q ss_pred eeEEEeeCC-CCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC---
Q 037120 158 LDAVRWNLA-NQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH--- 233 (489)
Q Consensus 158 V~~v~~~~~-~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d--- 233 (489)
-..|+|+|+ ....|..+... +.|+.+|...+ .+.. + .........++|.+++. ++++....
T Consensus 141 P~gvavd~~s~~g~Lyv~D~~-~~I~~id~~~g-----~v~~----~----~~~~~~P~giavd~dG~-lyVad~~~~~~ 205 (433)
T 4hw6_A 141 IWRMMFDPNSNYDDLYWVGQR-DAFRHVDFVNQ-----YVDI----K----TTNIGQCADVNFTLNGD-MVVVDDQSSDT 205 (433)
T ss_dssp CCEEEECTTTTTCEEEEECBT-SCEEEEETTTT-----EEEE----E----CCCCSCEEEEEECTTCC-EEEEECCSCTT
T ss_pred CceEEEccccCCCEEEEEeCC-CCEEEEECCCC-----EEEE----e----ecCCCCccEEEECCCCC-EEEEcCCCCcc
Confidence 456999985 22345555544 78888987322 1111 1 11223678999999998 66665422
Q ss_pred C-cEEEEECCCCCcCceeeccCCCCceeEEEEee-cCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeC
Q 037120 234 G-VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHA-ENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLA 311 (489)
Q Consensus 234 g-~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~ 311 (489)
. .+...+...+... .... ..-.....++++| ++.+.++-..++.|+.+|..++.....+...... ..-..++|+
T Consensus 206 ~~gv~~~~~~~~~~~-~~~~-~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~--~~~~~ia~d 281 (433)
T 4hw6_A 206 NTGIYLFTRASGFTE-RLSL-CNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTK--GSNFHIVWH 281 (433)
T ss_dssp SEEEEEECGGGTTCC-EEEE-EECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCC--SSCEEEEEC
T ss_pred cceEEEEECCCCeec-cccc-cccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCC--CCcccEEEe
Confidence 1 2333333221110 0111 1123456788999 5555444445889999999876542222211111 112357788
Q ss_pred CCCcc
Q 037120 312 SMLEK 316 (489)
Q Consensus 312 ~~~~~ 316 (489)
|++..
T Consensus 282 pdG~~ 286 (433)
T 4hw6_A 282 PTGDW 286 (433)
T ss_dssp TTSSE
T ss_pred CCCCE
Confidence 87763
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.86 E-value=0.27 Score=45.04 Aligned_cols=159 Identities=13% Similarity=0.009 Sum_probs=96.6
Q ss_pred ceeEEEECCC-CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 98 GISALDFDCK-GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 98 ~V~~~~fs~~-g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
...+++|++. +.++.+-...+.|..++........ ......... ...+++.+.+..++++-..
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~-------------~~~~~~l~~---p~glavd~~~g~ly~~d~~ 99 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ-------------NVVVSGLLS---PDGLACDWLGEKLYWTDSE 99 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCC-------------EEEEECCSC---CCEEEEETTTTEEEEEETT
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceE-------------EEEcCCCCC---ccEEEEEcCCCeEEEEECC
Confidence 3668899985 5555665667889999887631100 000001112 4458888766667777665
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCcCceeeccCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THGVVNIWDRRVGVLPSLELSTGS 255 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~h 255 (489)
. +.|.++++... . ...+. .........+++.|.+..++++-. ..+.|...++....... .....
T Consensus 100 ~-~~I~~~~~dG~--~-~~~l~---------~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~--~~~~~ 164 (318)
T 3sov_A 100 T-NRIEVSNLDGS--L-RKVLF---------WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFI--IINSE 164 (318)
T ss_dssp T-TEEEEEETTSC--S-CEEEE---------CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEE--EECSS
T ss_pred C-CEEEEEECCCC--c-EEEEE---------eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEE--EEECC
Confidence 5 89999998421 1 11111 112235688999987663444442 35788888876432111 11112
Q ss_pred CCceeEEEEeecCCEEEEEeC-CCeEEEEEcCC
Q 037120 256 HGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRG 287 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~ 287 (489)
-..-+.++++|++..|+.+.. .+.|..+|+..
T Consensus 165 l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG 197 (318)
T 3sov_A 165 IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG 197 (318)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCccEEEEeccCCEEEEEECCCCEEEEEcCCC
Confidence 234579999998887777755 78999999874
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.085 Score=48.11 Aligned_cols=172 Identities=10% Similarity=0.048 Sum_probs=97.0
Q ss_pred eEEEECCCCcEEEEEe-cCCeEEEEeCCCcccccCCCCCCCCCcccccccccC-CCCCCceeEEEe---eCCCCCEEEEE
Q 037120 100 SALDFDCKGIYLVSAT-RSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLH-IPLPQQLDAVRW---NLANQDEVACA 174 (489)
Q Consensus 100 ~~~~fs~~g~~la~g~-~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h-~~~~~~V~~v~~---~~~~~~~l~s~ 174 (489)
-+++|++....|..++ ..|+|..||.......... .. . ..| -.....+..|.| .|++. ++++.
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~-------~~-~---~s~~g~~~~~~sGl~~~~~D~~gr-L~vv~ 83 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVV-------ID-G---ASSNGDGEQQMSGLSLLTHDNSKR-LFAVM 83 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEEC-------CT-T---TCCSSCCSEEEEEEEESSSSSCCE-EEEEE
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEe-------cC-C---ccccCCCcceeeEEEEeccCCCCc-EEEEE
Confidence 4678987555555555 6999999998753221110 00 0 000 001112567999 57753 55543
Q ss_pred ec-------------CCCEEEEEEec---cCCCCCceeeeeceeee--eecCC-cccCeeEEEEecCCCcEEEEEeCC-C
Q 037120 175 ST-------------RSNVVSIYDIG---YISDEPVEVLKTRRSVT--VVGSD-VQKGLSDLAFSAVNTSRLIASDTH-G 234 (489)
Q Consensus 175 ~~-------------d~g~i~vwd~~---~~~~~~~~~~~~~~~~~--~~~~~-h~~~v~~~~~~~~~~~~l~s~s~d-g 234 (489)
.. + +.|..||+. ++ +............ ....+ -....++++..++|+ ..++++.. +
T Consensus 84 ~~~~af~~~g~~~~g~-~~v~~~Dl~~~~tg--~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~ 159 (334)
T 2p9w_A 84 KNAKSFNFADQSSHGA-SSFHSFNLPLSENS--KPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMP 159 (334)
T ss_dssp EETTTTCTTSCCSSSC-CEEEEEESSCCTTC--CCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSC
T ss_pred cccccccccccccCCC-CEEEEEcCCcCCCC--CEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCC
Confidence 31 4 789999995 22 1111111000000 00000 112488999999999 78888877 7
Q ss_pred cEEEEECCCCCcCceee-c--cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 037120 235 VVNIWDRRVGVLPSLEL-S--TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 235 ~i~iwd~~~~~~~~~~~-~--~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~ 287 (489)
.|...|........+.. . .......+.|+++|+|..|++....|.|..+|+++
T Consensus 160 ~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 160 AIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred eEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 77666655321111100 0 11223467999999999999997799999999984
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=96.82 E-value=0.3 Score=46.39 Aligned_cols=168 Identities=8% Similarity=-0.019 Sum_probs=97.7
Q ss_pred ceeEEEECC-CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 98 GISALDFDC-KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 98 ~V~~~~fs~-~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
....+++++ .+++..+-...+.|.+.+++...... .... .... ...+++.|.+..++.+-..
T Consensus 160 ~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~--------l~~~------~~~~---P~~iavdp~~g~ly~td~~ 222 (400)
T 3p5b_L 160 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT--------LFRE------NGSK---PRAIVVDPVHGFMYWTDWG 222 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEE--------EEEC------SSCC---EEEEEEETTTTEEEEEECS
T ss_pred CcccEEEEecCCceEEEECCCCeEEEEeCCCCceEE--------EEeC------CCCC---cceEEEecccCeEEEEeCC
Confidence 467889987 45555666667889988887632111 0000 1111 5679999976656666543
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~ 256 (489)
+.+.|...++... .. ..+. ...-...+.|++.+++..++++-...+.|..+|+.......+......-
T Consensus 223 ~~~~I~~~~~dG~--~~-~~~~---------~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l 290 (400)
T 3p5b_L 223 TPAKIKKGGLNGV--DI-YSLV---------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRL 290 (400)
T ss_dssp SSCCEEEEETTSC--SC-EEEE---------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTT
T ss_pred CCCEEEEEeCCCC--cc-EEEE---------ECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCC
Confidence 2267888877321 11 1111 1112356889999888734555456788999998754322221111112
Q ss_pred CceeEEEEeecCCEEEEE-eCCCeEEEEEcCCCcccceeec
Q 037120 257 GTLNSIQLHAENQIIFAA-GKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~-~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
.....+++ ++..++.+ ...+.|..+|..+|+.+..+..
T Consensus 291 ~~P~gl~v--~~~~lywtd~~~~~V~~~~~~~G~~~~~i~~ 329 (400)
T 3p5b_L 291 AHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNLLAE 329 (400)
T ss_dssp SSEEEEEE--ETTEEEEEESSSCSEEEEESSSCCCCEEEEC
T ss_pred CCCEEEEE--eCCEEEEecCCCCeEEEEEcCCCCceEEEec
Confidence 33456666 34455554 4478899999888877666653
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.25 Score=51.45 Aligned_cols=167 Identities=13% Similarity=0.018 Sum_probs=99.2
Q ss_pred CCceeEEEECCC-CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 96 KPGISALDFDCK-GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 96 ~~~V~~~~fs~~-g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
...+.+|+|++. +.++.+-...+.|+.+++....... ... ......... ...|++.+.+..++++-
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~--------~~~--~vi~~~l~~---P~GLAvD~~~~~LY~tD 489 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS--------SYD--TVISRDIQA---PDGLAVDWIHSNIYWTD 489 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------------CE--EEECSSCSC---CCEEEEETTTTEEEEEE
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCc--------cee--EEEecCCCC---cceeeeeecCCcEEEEe
Confidence 345788999985 4555555567888888887521100 000 000001122 45588888876677777
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC-CcEEEEECCCCCcCceeecc
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH-GVVNIWDRRVGVLPSLELST 253 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d-g~i~iwd~~~~~~~~~~~~~ 253 (489)
... +.|.+.++... . ..++. .........|++.|.+..++++-... +.|...++..... .....
T Consensus 490 ~~~-~~I~v~~ldG~--~-~~~l~---------~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~--~~lv~ 554 (791)
T 3m0c_C 490 SVL-GTVSVADTKGV--K-RKTLF---------RENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI--YSLVT 554 (791)
T ss_dssp TTT-TEEEEEETTSS--S-EEEEE---------ECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE--EEEEC
T ss_pred cCC-CeEEEEeCCCC--e-EEEEE---------eCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCce--EEEEe
Confidence 766 89999998422 1 11111 11223578999999866355544333 7888888875432 11222
Q ss_pred CCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcc
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRT 290 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~ 290 (489)
..-...+.|++++.+..|+.+-. .+.|..+|+.....
T Consensus 555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~ 592 (791)
T 3m0c_C 555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR 592 (791)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce
Confidence 22356789999988888887755 77899999875443
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.057 Score=55.38 Aligned_cols=62 Identities=15% Similarity=0.253 Sum_probs=45.2
Q ss_pred CCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecC
Q 037120 233 HGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNH 297 (489)
Q Consensus 233 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~ 297 (489)
+|.|..||+.+++.. .+.. +........+...+.++++++.||.|++||.++++.+..++..
T Consensus 437 ~g~l~A~D~~tG~~~-W~~~--~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~ 498 (668)
T 1kv9_A 437 SGALLAWDPVKQKAA-WKVP--YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQ 498 (668)
T ss_dssp EEEEEEEETTTTEEE-EEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cceEEEEeCCCCcEE-EEcc--CCCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCC
Confidence 478999999998632 2221 1233444455667889999988999999999999988777654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.02 Score=58.93 Aligned_cols=117 Identities=12% Similarity=0.066 Sum_probs=67.9
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCC--CCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCc
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYIS--DEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGV 235 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~ 235 (489)
+..|+|.+....++++-... +.|+.+++.... ......+ .........|++.+.+.+++++-...+.
T Consensus 408 p~gla~d~~~~~Ly~sD~~~-~~I~~~~~~g~~~~~~~~~~i----------~~~~~~P~glavD~~~g~LY~tD~~~~~ 476 (699)
T 1n7d_A 408 VVALDTEVASNRIYWSDLSQ-RMICSTQLDRAHGVSSYDTVI----------SRDIQAPDGLAVDWIHSNIYWTDSVLGT 476 (699)
T ss_dssp CCCCEEETTTTEEEECCTTT-TSBEEEESCCCCC-CCCCCBC----------CSCC--CCCEECCCSSSBCEECCTTTSC
T ss_pred eEEEccccccCeEEEEecCC-CeEEEEecCCCCCCcceEEEE----------eCCCCCcceEEEEeeCCcEEEEeccCCe
Confidence 45589998766555555544 889999984310 0100110 0011134567887655546666567789
Q ss_pred EEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC--CCeEEEEEcCC
Q 037120 236 VNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK--HGSIYLWDLRG 287 (489)
Q Consensus 236 i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~--dg~i~lwd~~~ 287 (489)
|.++|+.... ..............++++|.+.+|+.+.. .+.|..+++..
T Consensus 477 I~v~d~dg~~--~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG 528 (699)
T 1n7d_A 477 VSVADTKGVK--RKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG 528 (699)
T ss_dssp EEEEBSSSCC--EEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS
T ss_pred EEEEecCCCc--eEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC
Confidence 9999987543 12122222244578899997766666543 36788777754
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.53 Score=47.11 Aligned_cols=77 Identities=9% Similarity=0.090 Sum_probs=46.5
Q ss_pred EEEecCCCcEEEEEeCC----------------CcEEEEECCCCCcCceeecc-CCCC----cee---EEEEeecCC---
Q 037120 217 LAFSAVNTSRLIASDTH----------------GVVNIWDRRVGVLPSLELST-GSHG----TLN---SIQLHAENQ--- 269 (489)
Q Consensus 217 ~~~~~~~~~~l~s~s~d----------------g~i~iwd~~~~~~~~~~~~~-~h~~----~v~---~~~~~p~~~--- 269 (489)
+++.+... .++.+..+ +.|..+|.++++.. .+... .|.. .+. -+...++|+
T Consensus 240 ~a~d~~~g-~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~-W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~ 317 (571)
T 2ad6_A 240 YAYDPKLN-LFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAK-WGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTP 317 (571)
T ss_dssp CEEETTTT-EEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEE-EEEESSTTCSSCCCCCCCCEEEEEEETTEEEE
T ss_pred EEEcCCCC-eEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEE-EEecCCCCcccccccCCCCEEEecccCCcEEE
Confidence 55666666 55555422 35999999998743 22211 2211 111 122334674
Q ss_pred EEEEEeCCCeEEEEEcCCCcccceee
Q 037120 270 IIFAAGKHGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 270 ~l~~~~~dg~i~lwd~~~~~~~~~~~ 295 (489)
.++.++.+|.++++|..+|+.+..++
T Consensus 318 ~v~~~~~~G~l~~lD~~tG~~~w~~~ 343 (571)
T 2ad6_A 318 LLSHIDRNGILYTLNRENGNLIVAEK 343 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEeCCCcEEEEEECCCCCEEeeec
Confidence 56777789999999999998865554
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.38 Score=44.68 Aligned_cols=167 Identities=11% Similarity=0.126 Sum_probs=91.2
Q ss_pred ceeEEEECCCCcEEEEE------------ecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeC
Q 037120 98 GISALDFDCKGIYLVSA------------TRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNL 165 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g------------~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~ 165 (489)
+.-.++..|+|..++++ ..+|.|.++|..+........ ..... .+...... ...+.+.+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-----~~~g~-~~~~~~f~---PhGi~~~~ 121 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-----EIIGN-TLDISSFN---PHGISTFI 121 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-----EEECS-SCCGGGCC---EEEEEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-----EccCC-CCCcCcee---eeeeEEEE
Confidence 45566778888665554 268999999987421111000 00000 00001112 34466655
Q ss_pred --CCC-CEEEEEec-CCCEEEEEEeccCCCCCceeeeeceeeeeecCC-cccCeeEEEEecCCCcEEEEEe---C-----
Q 037120 166 --ANQ-DEVACAST-RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSD-VQKGLSDLAFSAVNTSRLIASD---T----- 232 (489)
Q Consensus 166 --~~~-~~l~s~~~-d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~s~s---~----- 232 (489)
++. .++++-.. .+.+|.+|++..... .+.....+ .+ .-...+++.+.++|. ++++.. .
T Consensus 122 d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~----~~~~~~~~----~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~ 192 (355)
T 3sre_A 122 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEK----SLLHLKTI----RHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLK 192 (355)
T ss_dssp CTTCCEEEEEEECSTTCCEEEEEEEETTTT----EEEEEEEE----CCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHH
T ss_pred CCCCcEEEEEEECCCCCCeEEEEEEECCCC----EEEEEecc----ccCCCCCCceEEEeCCCC-EEecCCcEeCCcccc
Confidence 343 24444332 137899999854321 11111111 21 234689999999997 666554 1
Q ss_pred ---------CCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCC
Q 037120 233 ---------HGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRG 287 (489)
Q Consensus 233 ---------dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~ 287 (489)
.|.|.-+|.. + +. .....-..-+.++|+|+++.++.+.. .+.|..||+..
T Consensus 193 ~~e~~~~~~~g~vyr~d~~--~--~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 193 SWEMHLGLAWSFVTYYSPN--D--VR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp HHHHHTTCCCEEEEEECTT--C--CE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred cchhhccCCccEEEEEECC--e--EE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 2455556542 2 11 12112245689999999999888865 88999999874
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.58 Score=42.96 Aligned_cols=155 Identities=14% Similarity=0.133 Sum_probs=85.2
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..+..+++.+++.+++.+...+..+-+|-... ...... .... ..+..+.+.+++. +++.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~------------tW~~~~--~~~~---~~~~~~~~~~~g~-~~~~~~- 223 (327)
T 2xbg_A 163 GVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQT------------AWEPHN--RTTS---RRLHNMGFTPDGR-LWMIVN- 223 (327)
T ss_dssp CCEEEEEECTTSCEEEEETTSSEEEEECTTCS------------SCEEEE--CCSS---SCEEEEEECTTSC-EEEEET-
T ss_pred cceEEEEEcCCCcEEEEECCCcEEEEeCCCCC------------ceeECC--CCCC---CccceeEECCCCC-EEEEeC-
Confidence 45889999999988887765544444443110 011100 0111 1277889988874 554444
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc---
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST--- 253 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--- 253 (489)
+ |.+.+.+...+ ........ .-..+...+.++.+.+++. +++. +.++.| ++....++ ......
T Consensus 224 ~-G~~~~s~~D~G-----~tW~~~~~---~~~~~~~~~~~v~~~~~~~-~~~~-g~~g~i-~~S~DgG~--tW~~~~~~~ 289 (327)
T 2xbg_A 224 G-GKIAFSDPDNS-----ENWGELLS---PLRRNSVGFLDLAYRTPNE-VWLA-GGAGAL-LCSQDGGQ--TWQQDVDVK 289 (327)
T ss_dssp T-TEEEEEETTEE-----EEECCCBC---TTSSCCSCEEEEEESSSSC-EEEE-ESTTCE-EEESSTTS--SCEECGGGT
T ss_pred C-ceEEEecCCCC-----CeeEeccC---CcccCCcceEEEEecCCCE-EEEE-eCCCeE-EEeCCCCc--ccEEcCccC
Confidence 4 88877642101 11111110 0001223588899988766 5554 447777 34444443 232222
Q ss_pred CCCCceeEEEEeecCCEEEEEeCCCeEEEEEc
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDL 285 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~ 285 (489)
.....+.++.|.+++ .+++++.+|.|.-++-
T Consensus 290 ~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 290 KVPSNFYKILFFSPD-QGFILGQKGILLRYVT 320 (327)
T ss_dssp TSSSCCCEEEEEETT-EEEEECSTTEEEEECC
T ss_pred CCCCCeEEEEEECCC-ceEEEcCCceEEEEcC
Confidence 234568889997554 5778888998877764
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.17 Score=49.15 Aligned_cols=164 Identities=10% Similarity=0.061 Sum_probs=93.3
Q ss_pred ceeEEEECCC--CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEe-------eCCCC
Q 037120 98 GISALDFDCK--GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRW-------NLANQ 168 (489)
Q Consensus 98 ~V~~~~fs~~--g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~-------~~~~~ 168 (489)
....|+|+|. ++++++-...+.|++.|.......... ... ..... ....++| ++++.
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~---------~~~--~~~~~---~p~~ia~~~~~~~~d~~G~ 205 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPL---------NIN--TIPTN---RIRSIAFNKKIEGYADEAE 205 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEE---------CCT--TSSCS---BEEEEEECCCBTTTBCTTC
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEE---------ccC--ccccC---CCcEEEEeecccccCCCCC
Confidence 4678999983 555555555577888998874333210 000 00111 2677999 99987
Q ss_pred CEEEEEecCC-----CEEEEEEecc-CCCC--C-ceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEE
Q 037120 169 DEVACASTRS-----NVVSIYDIGY-ISDE--P-VEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIW 239 (489)
Q Consensus 169 ~~l~s~~~d~-----g~i~vwd~~~-~~~~--~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iw 239 (489)
.++++...+. ..|.+++... +.-. + ...+. .+. ....++++|++..++++-..++.|..+
T Consensus 206 ~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-------~~~----~p~giavdp~~g~LYvtd~~~g~V~r~ 274 (496)
T 3kya_A 206 YMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-------AYK----QCNGATIHPINGELYFNSYEKGQVFRL 274 (496)
T ss_dssp EEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-------EES----CCCCEEECTTTCCEEEEETTTTEEEEE
T ss_pred EEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec-------cCC----CceEEEEcCCCCeEEEEECCCCEEEEE
Confidence 5555544320 1355555322 0000 0 01111 112 345678899666467777788899999
Q ss_pred ECC-------CCCc--C---c----e-eec-cCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcC
Q 037120 240 DRR-------VGVL--P---S----L-ELS-TGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLR 286 (489)
Q Consensus 240 d~~-------~~~~--~---~----~-~~~-~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~ 286 (489)
|+. ++.. + . . +.. .+.......++|+|+|++|+.+.. ...|+.+|..
T Consensus 275 d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 275 DLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp CHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 997 5442 0 0 1 111 122344578999999997666644 7889987654
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.33 Score=48.67 Aligned_cols=62 Identities=19% Similarity=0.258 Sum_probs=43.0
Q ss_pred CCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecC
Q 037120 233 HGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNH 297 (489)
Q Consensus 233 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~ 297 (489)
+|.|..||+.+++.. .+... ..++..-.+...+.+++.++.||.++.||.++|+.+-.++..
T Consensus 465 ~G~l~A~D~~tG~~~-W~~~~--~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~ 526 (582)
T 1flg_A 465 VGSLRAMDPVSGKVV-WEHKE--HLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTG 526 (582)
T ss_dssp SEEEEEECTTTCCEE-EEEEE--SSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred cceEEEEECCCCCEE-EEecC--CCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCC
Confidence 688999999998732 22211 122222223345778888988999999999999998777653
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.17 Score=50.73 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=42.6
Q ss_pred CCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeec
Q 037120 233 HGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 233 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
+|.|..||+.+++.. .+.. +...+.+..+...+..+++++.||.|+.||.++|+.+..++.
T Consensus 443 ~g~l~a~D~~tG~~~-W~~~--~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 443 MGQIRAFDLTTGKAK-WTKW--EKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp CEEEEEECTTTCCEE-EEEE--ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCEE-EEec--CCCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 578999999988732 2221 122333333444577888888899999999999998777764
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.75 Score=42.75 Aligned_cols=107 Identities=8% Similarity=-0.023 Sum_probs=59.3
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecC---CCcEEEEEeCC-
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAV---NTSRLIASDTH- 233 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~l~s~s~d- 233 (489)
-..++|.|++. ++++- .+ |.|.+++ . +. ...+.....+ ..-......|+|+|+ +..++++-...
T Consensus 33 P~~ia~~pdG~-l~V~e-~~-g~I~~i~-~-g~---~~~~~~~~v~----~~g~~~p~gia~~pdf~~~g~lYv~~~~~~ 100 (352)
T 2ism_A 33 PWALAFLPDGG-MLIAE-RP-GRIRLFR-E-GR---LSTYAELSVY----HRGESGLLGLALHPRFPQEPYVYAYRTVAE 100 (352)
T ss_dssp EEEEEECTTSC-EEEEE-TT-TEEEEEE-T-TE---EEEEEECCCC----CSTTCSEEEEEECTTTTTSCEEEEEEEECT
T ss_pred ceEEEEcCCCe-EEEEe-CC-CeEEEEE-C-CC---ccEeecceEe----ecCCCCceeEEECCCCCCCCEEEEEEecCC
Confidence 56699999985 55554 44 8999998 1 21 1111111111 222346889999998 45244444432
Q ss_pred ----CcEEEEECCCCCc----Cceeecc---CCCCceeEEEEeecCCEEEEEeC
Q 037120 234 ----GVVNIWDRRVGVL----PSLELST---GSHGTLNSIQLHAENQIIFAAGK 276 (489)
Q Consensus 234 ----g~i~iwd~~~~~~----~~~~~~~---~h~~~v~~~~~~p~~~~l~~~~~ 276 (489)
+.|..|+...+.. ..+..+. ........++|.|+|.+.++.+.
T Consensus 101 ~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~ 154 (352)
T 2ism_A 101 GGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGE 154 (352)
T ss_dssp TSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCC
T ss_pred CCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECC
Confidence 6788888764311 1121111 11122368999999976555443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=96.24 E-value=0.69 Score=42.28 Aligned_cols=116 Identities=9% Similarity=-0.002 Sum_probs=74.9
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
..+++|.+....++.+-... +.|..+++...... ...+. ..-.....+++.+.+.+++++-...+.|.
T Consensus 37 ~~~ld~d~~~~~lyw~D~~~-~~I~r~~~~g~~~~-~~~~~----------~~l~~p~glavd~~~g~ly~~d~~~~~I~ 104 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWSDVSE-EAIKRTEFNKTESV-QNVVV----------SGLLSPDGLACDWLGEKLYWTDSETNRIE 104 (318)
T ss_dssp EEEEEEEGGGTEEEEEETTT-TEEEEEETTSSSCC-CEEEE----------ECCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred cEEEEEEeCCCEEEEEECCC-CcEEEEEccCCCce-EEEEc----------CCCCCccEEEEEcCCCeEEEEECCCCEEE
Confidence 66799998766566666655 89999998433111 01111 01124667899876664666666788999
Q ss_pred EEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC--CCeEEEEEcCC
Q 037120 238 IWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK--HGSIYLWDLRG 287 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~--dg~i~lwd~~~ 287 (489)
++++....... ...........++++|.+..|+.+.. .+.|...++..
T Consensus 105 ~~~~dG~~~~~--l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG 154 (318)
T 3sov_A 105 VSNLDGSLRKV--LFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDG 154 (318)
T ss_dssp EEETTSCSCEE--EECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTS
T ss_pred EEECCCCcEEE--EEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCC
Confidence 99987543111 22223355689999998777777653 57888888764
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.47 Score=47.69 Aligned_cols=76 Identities=9% Similarity=0.116 Sum_probs=47.7
Q ss_pred EEEecCCCcEEEEEeCC----------------CcEEEEECCCCCcCceeecc-CCC--------CceeEEEEe-ecC--
Q 037120 217 LAFSAVNTSRLIASDTH----------------GVVNIWDRRVGVLPSLELST-GSH--------GTLNSIQLH-AEN-- 268 (489)
Q Consensus 217 ~~~~~~~~~~l~s~s~d----------------g~i~iwd~~~~~~~~~~~~~-~h~--------~~v~~~~~~-p~~-- 268 (489)
+++.+... +++.+..+ +.|..+|.++++.. .+... .|. .++. +... .+|
T Consensus 246 ~a~d~~~g-~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~-W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~ 322 (599)
T 1w6s_A 246 YAYDPGTN-LIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAK-FGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA 322 (599)
T ss_dssp CEEETTTT-EEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEE-EEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred eeEeCCCC-EEEEeCCCCccccCcccCCCccccceEEEEeCCCCcee-eEeecCCCccccccCCCccEE-EeccccCCcE
Confidence 45566666 66666644 47999999998743 22222 221 1111 2222 467
Q ss_pred -CEEEEEeCCCeEEEEEcCCCcccceee
Q 037120 269 -QIIFAAGKHGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 269 -~~l~~~~~dg~i~lwd~~~~~~~~~~~ 295 (489)
..++.++.+|.++++|.++|+.+....
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~ 350 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVSANK 350 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEEECCCcEEEEEECCCCCEeeccc
Confidence 456677889999999999998865554
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.10 E-value=0.16 Score=47.96 Aligned_cols=136 Identities=12% Similarity=0.074 Sum_probs=79.9
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCccccccccc-CC--CCCCceeEEEeeCCCCC--EEE
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLL-HI--PLPQQLDAVRWNLANQD--EVA 172 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~-h~--~~~~~V~~v~~~~~~~~--~l~ 172 (489)
.|..+..||+|++||..+. ..|.|-.+........+..-. +.... ..+.. .. ....+|..+.|+|-+.. .|+
T Consensus 67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~-~~~q~-~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LV 143 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ-DAFQI-FHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIV 143 (452)
T ss_dssp TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH-HTTEE-EEEEGGGCC--CCCCEEEEEECTTBGGGCEEE
T ss_pred ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc-cccce-eEEEcCCcccCCCCceeEEEeccccCCCCeEE
Confidence 4677899999999999875 479999887422111100000 00000 00111 00 01234999999997643 566
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe--CCCcEEEEE
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD--THGVVNIWD 240 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s--~dg~i~iwd 240 (489)
+-..| ++|++||+.....+|. .+...... ..+......|.+++|.+++- .|...+ ..|.|+-.-
T Consensus 144 VLtsD-~~Ir~yDl~~s~~~P~-~L~k~~~~-fg~d~~~~ev~S~~Fg~~~l-TLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 144 VLKED-DTITMFDILNSQEKPI-VLNKPNNS-FGLDARVNDITDLEFSKDGL-TLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp EEETT-SCEEEEETTCTTSCCE-EESCCCSE-EESCSSCCCEEEEEECTTSS-CEEEEECTTSCEEEEES
T ss_pred EEecC-CEEEEEEcccCCCCCc-chhccccc-cCCCcccceEEEEEEcCCCc-EEEEEecCCCCCEEEEC
Confidence 66666 9999999976555554 44322111 12234447899999998665 555544 778887543
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.05 E-value=1.8 Score=45.19 Aligned_cols=194 Identities=7% Similarity=-0.020 Sum_probs=108.5
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..|.++..+++|.+. .|+.++-|..++.......... ..+... ....-....|.++...+++. + -.|+.
T Consensus 313 ~~v~~i~~D~~g~lW-igt~~~Gl~~~~~~~~~~~~~~-------~~~~~~-~~~~l~~~~v~~i~~d~~g~-l-Wigt~ 381 (781)
T 3v9f_A 313 ASARYIFQDSFNNIW-IGTWGGGINFISNAPPTFHTWS-------YSPTQM-NESSLSNKVVSSVCDDGQGK-L-WIGTD 381 (781)
T ss_dssp SCEEEEEECSSCCEE-EEEBSSCEEEECSSCCSCEEEC-----------CC-CSSCCSSSCEEEEEECTTSC-E-EEEEB
T ss_pred CeEEEEEEeCCCCEE-EEecCCeEEEeCCCCCcceeec-------cCcccc-ccCCCCCcceEEEEEcCCCC-E-EEEeC
Confidence 459999999998754 5776777888887753322110 000000 00000112288888877764 4 44444
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeec--cC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELS--TG 254 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~ 254 (489)
+ +-|..||.... .+.... .........|.++...+++. |..|+.++-|..+|.++++ ..... ..
T Consensus 382 ~-~Gl~~~~~~~~------~~~~~~---~~~~~~~~~v~~i~~d~~g~--lWigt~~~Gl~~~~~~~~~--~~~~~~~~~ 447 (781)
T 3v9f_A 382 G-GGINVFENGKR------VAIYNK---ENRELLSNSVLCSLKDSEGN--LWFGTYLGNISYYNTRLKK--FQIIELEKN 447 (781)
T ss_dssp S-SCEEEEETTEE------EEECC--------CCCSBEEEEEECTTSC--EEEEETTEEEEEECSSSCE--EEECCSTTT
T ss_pred C-CcEEEEECCCC------eEEEcc---CCCCCCCcceEEEEECCCCC--EEEEeccCCEEEEcCCCCc--EEEeccCCC
Confidence 4 56888887321 111100 00012345788988877776 5557777789999987654 22111 11
Q ss_pred CCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCC-ccCCCCeeEEEeCCCCcce
Q 037120 255 SHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHK-EVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~-~~~~~~v~~l~~~~~~~~i 317 (489)
....|.++...+++.+.+ |+. +-|..||..+++......... ......|.++...++|...
T Consensus 448 ~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lW 509 (781)
T 3v9f_A 448 ELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFW 509 (781)
T ss_dssp CCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEE
T ss_pred CCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEE
Confidence 346789999888887544 444 568899988765422111110 0001338899888888655
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.026 Score=58.15 Aligned_cols=166 Identities=8% Similarity=-0.026 Sum_probs=92.6
Q ss_pred eeEEEECCC-CcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 99 ISALDFDCK-GIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 99 V~~~~fs~~-g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
...|++++. +.++++-...+.|.++++........ .. ..... ...+++.|.+..++++-...
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l--------~~------~~~~~---P~giavDp~~g~ly~td~~~ 517 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL--------FR------EQGSK---PRAIVVDPVHGFMYWTDWGT 517 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEE--------CC------CSSCC---CCCEECCSSSSCCEECCCSS
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEE--------Ee------CCCCC---cceEEEccCCCcEEEcccCC
Confidence 567888854 45555555678899998876322110 00 00112 34488998766566655322
Q ss_pred CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCC
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHG 257 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~ 257 (489)
.+.|.++++... . ..++. ...-...+.|+|.|++..++++-+..+.|..+|+.......+........
T Consensus 518 ~~~I~~~~~dG~--~-~~~l~---------~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~ 585 (699)
T 1n7d_A 518 PAKIKKGGLNGV--D-IYSLV---------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLA 585 (699)
T ss_dssp SCCEEBCCSSSC--C-CCEES---------CSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCS
T ss_pred CCeEEEEeCCCC--C-eeEEE---------eCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCC
Confidence 257777776321 1 01111 01112456799999877466666677899999987533222211111112
Q ss_pred ceeEEEEeecCCEEEEEe-CCCeEEEEEcCCCcccceee
Q 037120 258 TLNSIQLHAENQIIFAAG-KHGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 258 ~v~~~~~~p~~~~l~~~~-~dg~i~lwd~~~~~~~~~~~ 295 (489)
....|++.. ..|+.+. ..+.|..+|..+++.+..+.
T Consensus 586 ~P~glavd~--~~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 586 HPFSLAVFE--DKVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp SCCCCEEET--TEEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred CceEeEEEC--CEEEEEeCCCCeEEEEEccCCCceEEee
Confidence 234555543 3555554 47899999988877655554
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=95.79 E-value=1.2 Score=41.31 Aligned_cols=111 Identities=11% Similarity=0.027 Sum_probs=57.1
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecC---CCcEEEEEeC--
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAV---NTSRLIASDT-- 232 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~l~s~s~-- 232 (489)
-..++|.|++..++++- .. |.|++++...... ..+...... ..........|+|+|+ +..++++-+.
T Consensus 20 P~~i~~~pdG~~l~V~e-~~-G~i~~~~~~g~~~---~~~~~~~~v---~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~ 91 (353)
T 2g8s_A 20 PWALAFLPDNHGMLITL-RG-GELRHWQAGKGLS---APLSGVPDV---WAHGQGGLLDVVLAPDFAQSRRIWLSYSEVG 91 (353)
T ss_dssp EEEEEECSTTCCEEEEE-TT-TEEEEEETTTEEC---CCCBSCCCC---CCSTTCSEEEEEECTTHHHHCEEEEEEEEEC
T ss_pred cEEEEEcCCCCEEEEEe-CC-ceEEEEeCCCcee---eEecCCccc---ccCCCCCceeEEECCCCCCCCEEEEEEeCCC
Confidence 56799999985455544 45 8999998521100 111111000 0122346789999996 4424444332
Q ss_pred -----CCcEEEEECCCCCc-----C-ceeecc---CCCCceeEEEEeecCCEEEEEeC
Q 037120 233 -----HGVVNIWDRRVGVL-----P-SLELST---GSHGTLNSIQLHAENQIIFAAGK 276 (489)
Q Consensus 233 -----dg~i~iwd~~~~~~-----~-~~~~~~---~h~~~v~~~~~~p~~~~l~~~~~ 276 (489)
...|..|++..... . .+..+. .....-..++|.|+|.+.++.+.
T Consensus 92 ~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd 149 (353)
T 2g8s_A 92 DDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGE 149 (353)
T ss_dssp SSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECC
T ss_pred CCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECC
Confidence 23566666653310 0 111111 01112357999999966666544
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.52 E-value=2.8 Score=43.63 Aligned_cols=199 Identities=11% Similarity=0.009 Sum_probs=107.1
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..|.++..+++|.+.+ |+.+ -+.+||..+........ .......... ..|.++...+++ .+..|..
T Consensus 211 ~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~-------~~~~~~~l~~---~~i~~i~~d~~g--~lWigt~ 276 (781)
T 3v9f_A 211 NDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHN-------NPGNIHGALS---SYIFSIKQLKDN--KLWIATE 276 (781)
T ss_dssp SSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC------------------CC---CCEEEEEECTTS--EEEEEES
T ss_pred CceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEc-------CCCccccccC---ceEEEEEECCCC--CEEEEeC
Confidence 4599999999987665 4445 58889987643332110 0000000011 128888887775 4555554
Q ss_pred CCCEEEEEEeccCCCCCceeeee--ce---eeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKT--RR---SVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~--~~---~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
. +-|.++|.....-. .+.. .. .......-....|.++...++|. |..|+.++-|..++...........
T Consensus 277 ~-~Gl~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~ 350 (781)
T 3v9f_A 277 L-NGIMILDLQQNQFL---LPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN--IWIGTWGGGINFISNAPPTFHTWSY 350 (781)
T ss_dssp S-SCEEEEETTCC------------CEEECBCSSTTSBSSSCEEEEEECSSCC--EEEEEBSSCEEEECSSCCSCEEEC-
T ss_pred C-CCeEEECCCCCeee---eeeccccccccCCCCCCCCCCCeEEEEEEeCCCC--EEEEecCCeEEEeCCCCCcceeecc
Confidence 3 56788887432111 0000 00 00000012345789998887776 6677778889999987654211110
Q ss_pred -------ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 252 -------STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 252 -------~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
.......|.++...++|.+ ..|+.++-|..||..++... .+..........|.++...+++...
T Consensus 351 ~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~~v~~i~~d~~g~lW 421 (781)
T 3v9f_A 351 SPTQMNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVAI-YNKENRELLSNSVLCSLKDSEGNLW 421 (781)
T ss_dssp ---CCCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEEE-CC-----CCCSBEEEEEECTTSCEE
T ss_pred CccccccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeEE-EccCCCCCCCcceEEEEECCCCCEE
Confidence 0012356889998888775 55665666888998764321 1110000001238888888777654
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.77 Score=46.10 Aligned_cols=62 Identities=13% Similarity=0.113 Sum_probs=42.1
Q ss_pred CCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeec
Q 037120 232 THGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 232 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
.+|.|..||+.+++.. .+... ..++..-.+...+.+++.++.||.|+.||.++|+.+-.++.
T Consensus 451 ~~G~l~A~D~~tG~~~-W~~~~--~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYK-WEKME--RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp CCEEEEEECTTTCCEE-EEEEE--SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CcCeEEEEECCCCCEE-eEecC--CCCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeC
Confidence 3478999999988632 22211 12222222334677888888899999999999998777764
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=2.8 Score=42.26 Aligned_cols=166 Identities=9% Similarity=-0.009 Sum_probs=95.5
Q ss_pred CceeEEEECCCC-cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 97 PGISALDFDCKG-IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 97 ~~V~~~~fs~~g-~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
.....+++++.+ ++..+-...+.|.+.+++...... +. ...... -..|++.|.+..++++-.
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~---------l~-----~~~l~~---P~~Iavdp~~g~ly~tD~ 146 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV---------LF-----WQELDQ---PRAIALDPSSGFMYWTDW 146 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE---------EE-----CSSCSC---CCCEEEETTTTEEEEEEC
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEE---------EE-----eCCCCC---CceEEEecCCCeEEEecc
Confidence 357889999955 455555668899999988632211 00 011122 344999998665666654
Q ss_pred cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCC
Q 037120 176 TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGS 255 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h 255 (489)
.+.+.|...++... .. ..+.. ..-...+.|++.+++..++++-...+.|...|+.......+ ..+.
T Consensus 147 g~~~~I~r~~~dG~--~~-~~l~~---------~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~--~~~~ 212 (619)
T 3s94_A 147 GEVPKIERAGMDGS--SR-FIIIN---------SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAV--VKGS 212 (619)
T ss_dssp SSSCEEEEEETTSC--SC-EEEEC---------SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--------
T ss_pred CCCCEEEEEECCCC--ce-EEEEe---------CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEE--EeCC
Confidence 32257766666321 11 11111 11235688999998773555555778899999875432211 1111
Q ss_pred CCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcccceee
Q 037120 256 HGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~ 295 (489)
......+++..+ .++.+.. .+.|...|..+++....+.
T Consensus 213 ~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~ 251 (619)
T 3s94_A 213 LPHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIH 251 (619)
T ss_dssp ---CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEECC
T ss_pred CCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEEe
Confidence 122345666544 6666654 7889999998887655544
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=2.1 Score=39.68 Aligned_cols=107 Identities=7% Similarity=-0.050 Sum_probs=58.5
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecC---CCcEEEEEeC--
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAV---NTSRLIASDT-- 232 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~l~s~s~-- 232 (489)
-..++|.|++. ++++ ..+ |.|+++|. .+ . ..+.....+ ..-......|+++|+ +..++++-+.
T Consensus 31 P~~ia~~pdG~-l~V~-e~~-g~I~~~d~-~G--~--~~~~~~~v~----~~g~~g~~gia~~pdf~~~g~lyv~~~~~~ 98 (354)
T 3a9g_A 31 PWSIAPLGGGR-YLVT-ERP-GRLVLISP-SG--K--KLVASFDVA----NVGEAGLLGLALHPEFPKKSWVYLYASYFA 98 (354)
T ss_dssp EEEEEEEETTE-EEEE-ETT-TEEEEECS-SC--E--EEEEECCCC----CSTTCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred CeEEEEcCCCe-EEEE-eCC-CEEEEEeC-CC--c--eEeecccee----ecCCCceeeEEeCCCCCcCCEEEEEEeccC
Confidence 56799999975 5555 444 89998863 11 1 122111111 222346889999998 4424444432
Q ss_pred -C----CcEEEEECCCCC-----cC-ceeecc-CCCCceeEEEEeecCCEEEEEeC
Q 037120 233 -H----GVVNIWDRRVGV-----LP-SLELST-GSHGTLNSIQLHAENQIIFAAGK 276 (489)
Q Consensus 233 -d----g~i~iwd~~~~~-----~~-~~~~~~-~h~~~v~~~~~~p~~~~l~~~~~ 276 (489)
+ ..|..|+..... .. .+..+. ........++|.|+|.+.++.+.
T Consensus 99 ~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~ 154 (354)
T 3a9g_A 99 EGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGD 154 (354)
T ss_dssp GGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCC
T ss_pred CCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECC
Confidence 3 567778766431 11 111111 11123467999999986666543
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=95.01 E-value=2.4 Score=40.86 Aligned_cols=120 Identities=10% Similarity=-0.018 Sum_probs=60.7
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC---CCCEEEEE
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA---NQDEVACA 174 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~---~~~~l~s~ 174 (489)
.-..|+|.|+|+++++-...+.|++++........ ...............++..|+|+|+ +..+.++-
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~---------~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKT---------VFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE---------EEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeE---------EecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 46799999999977765544578888764322111 0000000000011233778999996 54566665
Q ss_pred ec------C-----CCEEEEEEeccCCCCCceeeeeceeeeeec-CCcccCeeEEEEecCCCcEEEEEe
Q 037120 175 ST------R-----SNVVSIYDIGYISDEPVEVLKTRRSVTVVG-SDVQKGLSDLAFSAVNTSRLIASD 231 (489)
Q Consensus 175 ~~------d-----~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~s 231 (489)
+. + ...|.-|++..... .+...+.....+ .........|+|.|+|. ++++.+
T Consensus 99 s~~~~~~~~~~~~~~~~v~r~~~~~~~~----~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~G 162 (454)
T 1cru_A 99 TFKNPKSTDKELPNQTIIRRYTYNKSTD----TLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIG 162 (454)
T ss_dssp EEECTTC--CCSCEEEEEEEEEEETTTT----EEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEEC
T ss_pred eccccCCCccccccccEEEEEEECCCCC----CcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEEC
Confidence 43 1 03555555532110 111111111111 11122478999999998 666655
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=94.90 E-value=3.5 Score=41.23 Aligned_cols=62 Identities=16% Similarity=0.155 Sum_probs=39.8
Q ss_pred CcEEEEECCCCCcCceeec-cCCCC----ceeE-EEEe---ecCC---EEEEEeCCCeEEEEEcCCCcccceeec
Q 037120 234 GVVNIWDRRVGVLPSLELS-TGSHG----TLNS-IQLH---AENQ---IIFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 234 g~i~iwd~~~~~~~~~~~~-~~h~~----~v~~-~~~~---p~~~---~l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
+.|..+|.++++.. .+.. ..|.. .+.. +.+. .+|+ .++.++.+|.++++|.++|+.+..+..
T Consensus 291 ~~v~AlD~~TG~~~-W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 291 SGQVGVDPSSGEVK-WFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp SEEEEECTTTCCEE-EEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred ceEEEEeCCCCCEE-EEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence 58999999998743 2221 12321 1111 2222 4674 677888899999999999998666553
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=94.87 E-value=2.3 Score=38.92 Aligned_cols=76 Identities=11% Similarity=0.137 Sum_probs=45.1
Q ss_pred cccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCc
Q 037120 210 VQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGR 289 (489)
Q Consensus 210 h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~ 289 (489)
+...+..+++.+++. +++.+...+..+-+|-.-.....+ .......+..+.+.+++..+ +++.+|.+++.+...++
T Consensus 161 ~~~~~~~~~~~~~~~-~~~~g~~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~ 236 (327)
T 2xbg_A 161 AIGVMRNLNRSPSGE-YVAVSSRGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSE 236 (327)
T ss_dssp CCCCEEEEEECTTSC-EEEEETTSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEE
T ss_pred CCcceEEEEEcCCCc-EEEEECCCcEEEEeCCCCCceeEC--CCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCC
Confidence 445788999999877 665554433334444311111122 12345678899999988754 55668888877533333
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=94.59 E-value=2.1 Score=39.47 Aligned_cols=116 Identities=13% Similarity=-0.042 Sum_probs=61.9
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC---CCCEEEE
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA---NQDEVAC 173 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~---~~~~l~s 173 (489)
..-..|+|.|+|.++++--..|.|++++........ ..... ........+...|+|+|+ +..+.++
T Consensus 32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~---------v~~~~--~v~~~g~~GllGia~~Pdf~~~g~lYv~ 100 (347)
T 3das_A 32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTE---------LGEVP--GVSPSGEGGLLGIALSPDYASDHMVYAY 100 (347)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE---------EEECT--TCCCBTTBSEEEEEECTTHHHHCEEEEE
T ss_pred CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEee---------ecccC--ceeecCCCCceeeEeccccccCCEEEEE
Confidence 346899999999987776658999999765422111 00000 000111223778999995 3335554
Q ss_pred Ee--cCCCEEEEEEeccCCC------CCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe
Q 037120 174 AS--TRSNVVSIYDIGYISD------EPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD 231 (489)
Q Consensus 174 ~~--~d~g~i~vwd~~~~~~------~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s 231 (489)
-+ .+ +.|.-|.+..... ....++.... ....| .-..|+|.|+|. ++++.+
T Consensus 101 yt~~~~-~~v~R~~~~~~~~~~~~~~~~~~i~~~~p----~~~~H--~g~~l~fgpDG~-Lyvt~G 158 (347)
T 3das_A 101 FTSASD-NRIVRMLYDEKKPSGEQLGAPDTVFRGIP----KGVIH--NGGRIAFGPDKM-LYAGTG 158 (347)
T ss_dssp EECSSS-EEEEEEEBCTTSCTTCCBCCCEEEEEEEC----CCSSC--CCCCEEECTTSC-EEEECB
T ss_pred EecCCC-CEEEEEEeCCCCcccccCCCcEEEEEcCC----CCCCc--cCccccCCCCCC-EEEEEC
Confidence 32 23 5666666643110 1111111111 01234 346799999998 666654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=94.12 E-value=0.38 Score=49.14 Aligned_cols=118 Identities=8% Similarity=-0.009 Sum_probs=70.5
Q ss_pred EEEeeC-CCCCEEEEEecCC----------CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEE
Q 037120 160 AVRWNL-ANQDEVACASTRS----------NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLI 228 (489)
Q Consensus 160 ~v~~~~-~~~~~l~s~~~d~----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 228 (489)
++++.+ ++ .+++.|+.+. ..+.+||.....-.....+. ..+.....++++..++. +++
T Consensus 190 ~~av~~~~g-~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~---------~~~~~~~~~~~~~~~g~-lyv 258 (656)
T 1k3i_A 190 AAAIEPTSG-RVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV---------TKHDMFCPGISMDGNGQ-IVV 258 (656)
T ss_dssp EEEEETTTT-EEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE---------CSCCCSSCEEEECTTSC-EEE
T ss_pred eEEEEecCC-EEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC---------CCCCCccccccCCCCCC-EEE
Confidence 466777 55 4666665431 16888988544322211111 12223344567778888 888
Q ss_pred EEe-CCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEe-CC-----CeEEEEEcCCCc
Q 037120 229 ASD-THGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAG-KH-----GSIYLWDLRGGR 289 (489)
Q Consensus 229 s~s-~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~-~d-----g~i~lwd~~~~~ 289 (489)
.|+ .+..+.+||..+.+...+..+... ..-.+++..++++.++.|| .+ ..+.+||..+.+
T Consensus 259 ~GG~~~~~v~~yd~~t~~W~~~~~~~~~-R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~ 325 (656)
T 1k3i_A 259 TGGNDAKKTSLYDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT 325 (656)
T ss_dssp ECSSSTTCEEEEEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred eCCCCCCceEEecCcCCceeECCCCCcc-ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence 888 556899999987653222111111 1123556667999999998 34 579999998754
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=94.00 E-value=3 Score=38.65 Aligned_cols=157 Identities=12% Similarity=-0.019 Sum_probs=78.0
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC---CCCEEEEE
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA---NQDEVACA 174 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~---~~~~l~s~ 174 (489)
.-..|+|.|+|+.|.++...|.|++++........ ...... . ......+...++|+|+ +..+.++-
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~---------~~~~~~-v-~~~g~~g~~gia~~pdf~~~g~lYv~~ 87 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAP---------LSGVPD-V-WAHGQGGLLDVVLAPDFAQSRRIWLSY 87 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCC---------CBSCCC-C-CCSTTCSEEEEEECTTHHHHCEEEEEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeE---------ecCCcc-c-ccCCCCCceeEEECCCCCCCCEEEEEE
Confidence 36789999999833445567999999854321100 000000 0 0011123677999996 44466654
Q ss_pred ecC------CCEEEEEEeccCCCCCceeeeeceeeeeec-----CCcccCeeEEEEecCCCcEEEEEeC-----------
Q 037120 175 STR------SNVVSIYDIGYISDEPVEVLKTRRSVTVVG-----SDVQKGLSDLAFSAVNTSRLIASDT----------- 232 (489)
Q Consensus 175 ~~d------~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~l~s~s~----------- 232 (489)
... ...|..|++..... .+...+.....+ ..|. -..|+|.|+|. ++++.+.
T Consensus 88 ~~~~~~g~~~~~v~r~~~~~~~~----~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~ 160 (353)
T 2g8s_A 88 SEVGDDGKAGTAVGYGRLSDDLS----KVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGY-LFIALGENNQRPTAQDLD 160 (353)
T ss_dssp EEECSSSCEEEEEEEEEECTTSS----BEEEEEEEEECSSCCBSSSCC--CCCEEECSSSE-EEEEECCTTCGGGGGCTT
T ss_pred eCCCCCCCceeEEEEEEECCCCC----CCCceEEEEEECCCCCCCccc--CccEEECCCCc-EEEEECCCCCCCccCCCC
Confidence 431 13566666632211 111111111111 1232 35799999997 6666543
Q ss_pred --CCcEEEEECCCCC------------cCceeeccCCCCceeEEEEeecCCEEEEE
Q 037120 233 --HGVVNIWDRRVGV------------LPSLELSTGSHGTLNSIQLHAENQIIFAA 274 (489)
Q Consensus 233 --dg~i~iwd~~~~~------------~~~~~~~~~h~~~v~~~~~~p~~~~l~~~ 274 (489)
.|.|.-+|....- ...+ ...+|. ....++|+|....|+++
T Consensus 161 ~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i-~a~G~r-np~gl~~d~~~g~l~~~ 214 (353)
T 2g8s_A 161 KLQGKLVRLTDQGEIPDDNPFIKESGVRAEI-WSYGIR-NPQGMAMNPWSNALWLN 214 (353)
T ss_dssp SCTTEEEEEETTSCCCTTCTTTTSTTSCTTE-EEECCS-EEEEEEEETTTTEEEEE
T ss_pred CCCeEEEEECCCCCCCCCCCCcCCCCCCccE-EEEcCc-CccceEEECCCCCEEEE
Confidence 2456666665320 0111 112343 35678999943344444
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.96 E-value=1.9 Score=39.90 Aligned_cols=110 Identities=15% Similarity=-0.033 Sum_probs=59.0
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC---CCCEEEEE
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA---NQDEVACA 174 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~---~~~~l~s~ 174 (489)
.-..++|.|+|+++++ ..+|.|.+++ .. .... ... .. . ..........|+|+|+ +..++++-
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~-~g-~~~~---------~~~-~~-v-~~~g~~~p~gia~~pdf~~~g~lYv~~ 96 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR-EG-RLST---------YAE-LS-V-YHRGESGLLGLALHPRFPQEPYVYAYR 96 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE-TT-EEEE---------EEE-CC-C-CCSTTCSEEEEEECTTTTTSCEEEEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE-CC-CccE---------eec-ce-E-eecCCCCceeEEECCCCCCCCEEEEEE
Confidence 4678999999986555 5679999998 32 1110 000 00 0 0011122677999998 54466655
Q ss_pred ecCC----CEEEEEEeccCCCCCceeeeeceeeeeec-----CCcccCeeEEEEecCCCcEEEEEe
Q 037120 175 STRS----NVVSIYDIGYISDEPVEVLKTRRSVTVVG-----SDVQKGLSDLAFSAVNTSRLIASD 231 (489)
Q Consensus 175 ~~d~----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~l~s~s 231 (489)
..+. +.|..|+.... . +...+.....+ ..|. ...++|.|+|. ++++.+
T Consensus 97 ~~~~~~~~~~v~r~~~~~~--~----~~~~~~l~~~~p~~~~~~h~--~~~l~~~pdG~-Lyv~~G 153 (352)
T 2ism_A 97 TVAEGGLRNQVVRLRHLGE--R----GVLDRVVLDGIPARPHGLHS--GGRIAFGPDGM-LYVTTG 153 (352)
T ss_dssp EECTTSSEEEEEEEEECSS--C----EEEEEEEEEEECCCTTCCCC--CCCEEECTTSC-EEEECC
T ss_pred ecCCCCCccEEEEEEeCCC--C----cCceEEEEEeCCCCCCCCcC--CceEEECCCCC-EEEEEC
Confidence 4210 46777777421 1 11111111111 1233 36899999997 666644
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=2.8 Score=35.67 Aligned_cols=158 Identities=11% Similarity=-0.043 Sum_probs=76.5
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
.+..++|+|+|.+.|+ .+|.+.-.+..+..... ........+...- ....++.|.|++. +.++ + |
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~---------W~~s~t~IG~~Gw-~~F~a~~fD~~G~-LYav-~-d 106 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDN---------WMGRAKKIGNGGW-NQFQFLFFDPNGY-LYAV-S-K 106 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCC---------HHHHCEEEECSCG-GGCSEEEECTTSC-EEEE-E-T
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCccc---------ccccccEeccccc-ccceEEEECCCCC-EEEe-C-C
Confidence 5779999999998777 67766555543311110 1111111111110 0136789999874 4444 4 4
Q ss_pred CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC----ceeecc
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP----SLELST 253 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~~ 253 (489)
|.|.-++-...... ..+...... . .+-=..+..|.|.|+|. + .+.. |+.++-+-.-+.... ....+.
T Consensus 107 -G~iyr~~pP~~~~~--~Wl~~a~~v-g--~~gw~~~~~lff~p~G~-L-yav~-dg~lyr~~~P~~~~~~wl~~~~~~g 177 (236)
T 1tl2_A 107 -DKLYKASPPQSDTD--NWIARATEV-G--SGGWSGFKFLFFHPNGY-L-YAVH-GQQFYKALPPVSNQDNWLARATKIG 177 (236)
T ss_dssp -TEEEEESCCCSTTC--CHHHHSEEE-E--CSSGGGEEEEEECTTSC-E-EEEE-TTEEEEECCCSSTTCCHHHHCEEEE
T ss_pred -CEEEEeCCCcCCCC--ceeccccEe-c--cCCCCceEEEEECCCce-E-EEEe-CCcEEecCCCCCCCcccccccceec
Confidence 88877765221111 111111110 0 11114678999999998 4 4444 777543322211100 000111
Q ss_pred -CCCCceeEEEEeecCCEEEEEeCCCeEE
Q 037120 254 -GSHGTLNSIQLHAENQIIFAAGKHGSIY 281 (489)
Q Consensus 254 -~h~~~v~~~~~~p~~~~l~~~~~dg~i~ 281 (489)
..-....-+.|.|++.+..+. +|.++
T Consensus 178 ~~g~~~yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 178 QGGWDTFKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp SSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred cCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence 112233446678887765554 66443
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=93.76 E-value=4.7 Score=38.19 Aligned_cols=129 Identities=12% Similarity=0.154 Sum_probs=80.2
Q ss_pred EEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEE
Q 037120 102 LDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVV 181 (489)
Q Consensus 102 ~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i 181 (489)
.-.+|..+.||.-. ..++.|||+++....... .+. .. |.--.|-.+. .|+-.. +..|
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~------~~~---------e~---VvfWkWis~~--~l~lVT--~taV 127 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH------TMT---------DD---VTFWKWISLN--TVALVT--DNAV 127 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEE------ECS---------SC---CCEEEEEETT--EEEEEC--SSEE
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcce------ecC---------CC---ceEEEecCCC--eEEEEc--CCee
Confidence 34688888887775 779999999985444321 011 11 6668887653 566666 4799
Q ss_pred EEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-------CCCcEEEEECCCCCcCceeeccC
Q 037120 182 SIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-------THGVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 182 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-------~dg~i~iwd~~~~~~~~~~~~~~ 254 (489)
.-|++.. ...|.+.+.....+ . ...|..-..+++.+ .++-.+ -.|.+.+|..+... -+.+.+
T Consensus 128 yHWsi~~-~s~P~kvFdR~~~L----~--~~QIInY~~d~~~k-W~~l~GI~~~~~~v~G~mQLYS~er~~---sQ~ieG 196 (494)
T 1bpo_A 128 YHWSMEG-ESQPVKMFDRHSSL----A--GCQIINYRTDAKQK-WLLLTGISAQQNRVVGAMQLYSVDRKV---SQPIEG 196 (494)
T ss_dssp EEEESSS-SCCCEEEEECCGGG----T--TCEEEEEEECTTSS-EEEEEEEEEETTEEEEEEEEEESTTCC---EEEECC
T ss_pred EEecccC-CCCchhheecchhc----c--cceEEEEEECCCCC-eEEEEeecccCCcccceEEEeeccccc---cchhee
Confidence 9999954 44555554433322 2 35677777788887 544333 24678899887643 456668
Q ss_pred CCCceeEEEE
Q 037120 255 SHGTLNSIQL 264 (489)
Q Consensus 255 h~~~v~~~~~ 264 (489)
|-+....+.+
T Consensus 197 haa~F~~~~~ 206 (494)
T 1bpo_A 197 HAASFAQFKM 206 (494)
T ss_dssp SEEEEEEEEC
T ss_pred eeeeeEEEec
Confidence 8655544433
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=7.2 Score=39.23 Aligned_cols=159 Identities=10% Similarity=0.011 Sum_probs=94.9
Q ss_pred ceeEEEECCCC-cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 98 GISALDFDCKG-IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 98 ~V~~~~fs~~g-~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
.+.+++|++.+ .++.+-...+.|..++.+...... .. ...... ...+++...+.+++.+-..
T Consensus 350 ~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~--------v~------~~~~~~---p~GlAvD~~~~~lY~tD~~ 412 (619)
T 3s94_A 350 HAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQF--------VV------TAQIAH---PDGIAVDWVARNLYWTDTG 412 (619)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--------EE------CSSCSC---CCEEEEETTTTEEEEEETT
T ss_pred ccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEE--------EE------ECCCCC---cCceEEecccCcEEEEeCC
Confidence 47789999854 444454557888888887521111 00 001112 4458888766667777666
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCcCceeeccCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THGVVNIWDRRVGVLPSLELSTGS 255 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~h 255 (489)
. +.|.+.++... ...++. ...-....+|++.|....++++-. ....|...++.-..... .....
T Consensus 413 ~-~~I~v~~~~G~---~~~~l~---------~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~--l~~~~ 477 (619)
T 3s94_A 413 T-DRIEVTRLNGT---MRKILI---------SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVV--LVNTS 477 (619)
T ss_dssp T-TEEEEEETTSC---SCEEEE---------CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--EECSS
T ss_pred C-CcEEEEeCCCC---eEEEEE---------ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEE--EEeCC
Confidence 6 89999988422 111211 112236789999997552555442 23667777765432111 12222
Q ss_pred CCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCC
Q 037120 256 HGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGG 288 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~ 288 (489)
-...+.|++++++..|+.+-. .+.|..+|+...
T Consensus 478 l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~ 511 (619)
T 3s94_A 478 LGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGT 511 (619)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred CCCCeeeEEcccCCEEEEEECCCCEEEEEecCCC
Confidence 346778999998887777755 678999998643
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=93.34 E-value=4.3 Score=37.55 Aligned_cols=113 Identities=14% Similarity=-0.024 Sum_probs=59.5
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC---CCCEEEE
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA---NQDEVAC 173 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~---~~~~l~s 173 (489)
..-..++|.|+|+++++ ..+|.|++++... . .. ..... . ......+...|+|+|+ +..++++
T Consensus 29 ~~P~~ia~~pdG~l~V~-e~~g~I~~~d~~G-~-~~---------~~~~~--v-~~~g~~g~~gia~~pdf~~~g~lyv~ 93 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVT-ERPGRLVLISPSG-K-KL---------VASFD--V-ANVGEAGLLGLALHPEFPKKSWVYLY 93 (354)
T ss_dssp SCEEEEEEEETTEEEEE-ETTTEEEEECSSC-E-EE---------EEECC--C-CCSTTCSEEEEEECTTTTTSCEEEEE
T ss_pred CCCeEEEEcCCCeEEEE-eCCCEEEEEeCCC-c-eE---------eeccc--e-eecCCCceeeEEeCCCCCcCCEEEEE
Confidence 34678999999985554 5569999997432 2 11 00000 0 0011122677999997 5456666
Q ss_pred Eec--CC----CEEEEEEeccCCCCCceeeeeceeee---eecCCcccCeeEEEEecCCCcEEEEEe
Q 037120 174 AST--RS----NVVSIYDIGYISDEPVEVLKTRRSVT---VVGSDVQKGLSDLAFSAVNTSRLIASD 231 (489)
Q Consensus 174 ~~~--d~----g~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~~l~s~s 231 (489)
-+. .+ +.|..|+....... +...+... .....|. ...|+|.|+|. ++++.+
T Consensus 94 ~~~~~~~~~~~~~v~r~~~~~~~~~----~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~-Lyvt~G 153 (354)
T 3a9g_A 94 ASYFAEGGHIRNRVIRGRLDGSTFK----LKEVKTLIDGIPGAYIHN--GGRIRFGPDGM-LYITTG 153 (354)
T ss_dssp EEEECGGGCEEEEEEEEEECSSSCC----EEEEEEEEEEEECCSSCC--CCCEEECTTSC-EEEECC
T ss_pred EeccCCCCCcceEEEEEEECCCCcC----cCccEEEEEcCCCCCCcC--CceEEECCCCc-EEEEEC
Confidence 552 11 46777776422111 11111110 1112233 46799999998 666644
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=93.16 E-value=5.1 Score=36.79 Aligned_cols=155 Identities=11% Similarity=0.167 Sum_probs=86.6
Q ss_pred CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCC----CCC--EEEEEecC--C
Q 037120 107 KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLA----NQD--EVACASTR--S 178 (489)
Q Consensus 107 ~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~----~~~--~l~s~~~d--~ 178 (489)
...+++.....+-+.|||+.. +.... +. ... +..|..-|. +.. ++++...+ +
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G-~~l~~--------~~--------~g~---~nnVD~r~~~~l~g~~~dla~as~R~~~~ 98 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDG-KMLHS--------YN--------TGK---LNNVDIRYDFPLNGKKVDIAAASNRSEGK 98 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTS-CEEEE--------EC--------CSC---EEEEEEEEEEEETTEEEEEEEEEECSTTC
T ss_pred CccEEEEEcCCCCEEEEcCCC-cEEEE--------cc--------CCC---cccEEEecccccCCceEeEEEEeCCCCCC
Confidence 445666666788999999954 22221 00 011 444554442 111 33444433 3
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEE--ecC-CCcEEEEEeCCCcEEEEECCC---CCc--Ccee
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAF--SAV-NTSRLIASDTHGVVNIWDRRV---GVL--PSLE 250 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~--~~~-~~~~l~s~s~dg~i~iwd~~~---~~~--~~~~ 250 (489)
++|.+|++..... .+............-...+..+++ +|. +..+++....+|.+..|++.. +.. ..++
T Consensus 99 n~l~vf~iDp~~~----~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR 174 (355)
T 3amr_A 99 NTIEIYAIDGKNG----TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVR 174 (355)
T ss_dssp CEEEEEEECTTTC----CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEE
T ss_pred CeEEEEEECCCCC----ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEE
Confidence 8999998832111 122211000000000135667777 664 433577777889999998843 211 1333
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcC
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLR 286 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~ 286 (489)
.+. ..+.+..+..++....|+.+-.+.-|..+|.+
T Consensus 175 ~f~-lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~ 209 (355)
T 3amr_A 175 AFK-MNSQTEGMAADDEYGRLYIAEEDEAIWKFSAE 209 (355)
T ss_dssp EEE-CSSCEEEEEEETTTTEEEEEETTTEEEEEECS
T ss_pred Eec-CCCCcceEEEcCCCCeEEEecccceEEEEeCC
Confidence 332 34678899999999999999888767777755
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=8.2 Score=38.89 Aligned_cols=120 Identities=10% Similarity=-0.008 Sum_probs=72.5
Q ss_pred CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCC
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHG 257 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~ 257 (489)
...|+..|+.... . ....+ ...-..+..|+|.+.+..++++-..++.|..+++...... ........
T Consensus 14 ~~~I~~i~l~~~~--~-~~~~~--------~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~--~v~~~g~~ 80 (628)
T 4a0p_A 14 RADIRRISLETNN--N-NVAIP--------LTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALE--HVVEFGLD 80 (628)
T ss_dssp TTEEEEEESSCTT--C-EEECC--------CCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE--EEECSSCS
T ss_pred CCcEEEEECCCCC--c-ceEEE--------cCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcE--EEEeCCCC
Confidence 3799999994321 1 11111 1112357889999987745666667899999998754322 12221224
Q ss_pred ceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcccceee-cCCccCCCCeeEEEeCCCCc
Q 037120 258 TLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFH-NHKEVCHLPLTSLKLASMLE 315 (489)
Q Consensus 258 ~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~-~~~~~~~~~v~~l~~~~~~~ 315 (489)
....+++++.+..|+.+.. .+.|.+.++..... ..+. ..-.. ...|++.|...
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~-~~l~~~~l~~----P~~iavdp~~G 135 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHR-QVLVWKDLDS----PRALALDPAEG 135 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTC-EEEECSSCCC----EEEEEEETTTT
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcE-EEEEeCCCCC----cccEEEccCCC
Confidence 5678999988777776655 78999999875432 2222 11222 56777777443
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=92.76 E-value=13 Score=40.45 Aligned_cols=35 Identities=9% Similarity=-0.023 Sum_probs=28.5
Q ss_pred CceeEEEECCC------CcEEEEEec-CCeEEEEeCCCcccc
Q 037120 97 PGISALDFDCK------GIYLVSATR-SGCLTVHDFESLYYQ 131 (489)
Q Consensus 97 ~~V~~~~fs~~------g~~la~g~~-dg~i~vwd~~~~~~~ 131 (489)
..|.|+++.|. ++++|.|.. |++|+|+++...+..
T Consensus 554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~ 595 (1158)
T 3ei3_A 554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELL 595 (1158)
T ss_dssp SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEE
T ss_pred CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeE
Confidence 45999999864 479999997 999999999874433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=92.73 E-value=11 Score=41.42 Aligned_cols=151 Identities=14% Similarity=0.208 Sum_probs=85.9
Q ss_pred EECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEE
Q 037120 103 DFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVS 182 (489)
Q Consensus 103 ~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~ 182 (489)
-.+|..+.||.-. ..++.|||+++....... .+.. +|.--.|-... .|+-.+ +..|.
T Consensus 72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~------~~~e------------~VvfWkWis~~--~l~lVT--~~aVy 128 (1630)
T 1xi4_A 72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAH------TMTD------------DVTFWKWISLN--TVALVT--DNAVY 128 (1630)
T ss_pred ccCCCcceEEEec-CCeEEEeehHHhhhhccc------ccCC------------CceEEEecCCC--eeEEEc--CCeEE
Confidence 3678887777765 779999999884444321 1111 16667886654 455555 46999
Q ss_pred EEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-------CCCcEEEEECCCCCcCceeeccCC
Q 037120 183 IYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-------THGVVNIWDRRVGVLPSLELSTGS 255 (489)
Q Consensus 183 vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-------~dg~i~iwd~~~~~~~~~~~~~~h 255 (489)
.|++.. ...|.+++...... . ...|..-..+++.+ .++-.| -.|.+.+|..+... .+.+.+|
T Consensus 129 HW~~~~-~s~P~k~fdR~~~L----~--~~QIinY~~d~~~k-W~~l~gi~~~~~~v~G~mQLyS~er~~---sQ~iegh 197 (1630)
T 1xi4_A 129 HWSMEG-ESQPVKMFDRHSSL----A--GCQIINYRTDAKQK-WLLLTGISAQQNRVVGAMQLYSVDRKV---SQPIEGH 197 (1630)
T ss_pred EeccCC-CCccHHHHhcchhc----c--cCeeEEeeeCCCCC-eEEEEeeccCCCcccceeeeeeccccc---chhhhHh
Confidence 999943 34454444332222 2 34666667777777 544333 34788899887643 3345577
Q ss_pred CCceeEEEEe--ecCCEEEEEeC----CCeEEEEEcCC
Q 037120 256 HGTLNSIQLH--AENQIIFAAGK----HGSIYLWDLRG 287 (489)
Q Consensus 256 ~~~v~~~~~~--p~~~~l~~~~~----dg~i~lwd~~~ 287 (489)
-+....+.+. +....+++-.. .+.++|-++..
T Consensus 198 a~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~ 235 (1630)
T 1xi4_A 198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGT 235 (1630)
T ss_pred HhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCC
Confidence 6555444432 22222333222 25666666643
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=92.52 E-value=6.3 Score=36.19 Aligned_cols=129 Identities=9% Similarity=0.106 Sum_probs=76.0
Q ss_pred eeEEEe--eCCCC-CEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCC
Q 037120 158 LDAVRW--NLANQ-DEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG 234 (489)
Q Consensus 158 V~~v~~--~~~~~-~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg 234 (489)
+..++. +|... ..++....+ |.+..|++....... ..-+..+.+ . -...+..|...+... .|+.+-++.
T Consensus 130 pyGlcly~~~~~g~~yafV~~k~-G~~~q~~l~~~~~g~-~~~~lVR~f----~-lgsq~EgcvvDd~~g-~Lyv~eEd~ 201 (355)
T 3amr_A 130 VYGFTLYHSQKTGKYYAMVTGKE-GEFEQYELKADKNGY-ISGKKVRAF----K-MNSQTEGMAADDEYG-RLYIAEEDE 201 (355)
T ss_dssp CCCEEEEECTTTCCEEEEEECSS-SEEEEEEEEECTTSC-EEEEEEEEE----E-CSSCEEEEEEETTTT-EEEEEETTT
T ss_pred eeEEEEEecCCCCcEEEEEECCC-CeEEEEEEEeCCCCc-ccceEEEEe----c-CCCCcceEEEcCCCC-eEEEecccc
Confidence 333777 67543 345555556 999999995322110 111112222 1 123788888888777 888899887
Q ss_pred cEEEEECCCCC--cC-ceeecc-CC-CCceeEEEE--eecCC-EEEEEeC-CCeEEEEEcC-CCccccee
Q 037120 235 VVNIWDRRVGV--LP-SLELST-GS-HGTLNSIQL--HAENQ-IIFAAGK-HGSIYLWDLR-GGRTSAPF 294 (489)
Q Consensus 235 ~i~iwd~~~~~--~~-~~~~~~-~h-~~~v~~~~~--~p~~~-~l~~~~~-dg~i~lwd~~-~~~~~~~~ 294 (489)
-|..+|.+... .. .+.... ++ ...+..|++ .++++ +|++++. +++..+||.. +.+.+..|
T Consensus 202 GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 202 AIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred eEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 77777755221 11 232221 22 246788888 45666 7888775 8899999996 44434444
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=92.43 E-value=6.7 Score=36.25 Aligned_cols=102 Identities=12% Similarity=0.148 Sum_probs=55.7
Q ss_pred CeeEEEEecCCCcEEEEEe------------CCCcEEEEECCCC--CcCceeeccC----CCCceeEEEEee--cCC-EE
Q 037120 213 GLSDLAFSAVNTSRLIASD------------THGVVNIWDRRVG--VLPSLELSTG----SHGTLNSIQLHA--ENQ-II 271 (489)
Q Consensus 213 ~v~~~~~~~~~~~~l~s~s------------~dg~i~iwd~~~~--~~~~~~~~~~----h~~~v~~~~~~p--~~~-~l 271 (489)
...+++..|+|. .+++++ .+|.|.++|..+. +...+..... .......+.+.+ ++. +|
T Consensus 51 G~EDi~~~~~G~-~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGL-AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSE-EEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCe-EEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 455677777765 444441 6899999999843 2112221111 123455677766 344 45
Q ss_pred EEEe-C--CCeEEEEEcCCCcc----cceeecCCccCCCCeeEEEeCCCCccee
Q 037120 272 FAAG-K--HGSIYLWDLRGGRT----SAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 272 ~~~~-~--dg~i~lwd~~~~~~----~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
+++. . +.+|.+|++..... +..+.+.. -...+.+.+.++|.+..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~---~~~pND~~v~~~G~fyv 180 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKL---LPSVNDIVAVGPEHFYA 180 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTT---CSSEEEEEEEETTEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCC---CCCCceEEEeCCCCEEe
Confidence 5552 2 56788887765422 23333211 13367888888887544
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=91.62 E-value=12 Score=37.60 Aligned_cols=164 Identities=9% Similarity=-0.060 Sum_probs=98.4
Q ss_pred ceeEEEECCCCc-EEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 98 GISALDFDCKGI-YLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 98 ~V~~~~fs~~g~-~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
....+++++.+. +..+-...+.|.+.+++...... ... ..... -..+++.|....++.+-..
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~--------l~~------~~l~~---P~~iavdp~~G~lY~tD~g 143 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQV--------LVW------KDLDS---PRALALDPAEGFMYWTEWG 143 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEE--------EEC------SSCCC---EEEEEEETTTTEEEEEECS
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEE--------EEe------CCCCC---cccEEEccCCCeEEEeCCC
Confidence 467888987654 44555567889999987622111 000 01112 5679999876556666533
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~ 256 (489)
+.+.|...++... .. ..+.. .-...+.|++.+++..++++-...+.|...|+...... .+...-
T Consensus 144 ~~~~I~r~~~dG~--~~-~~l~~----------~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~---v~~~~l 207 (628)
T 4a0p_A 144 GKPKIDRAAMDGS--ER-TTLVP----------NVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE---VIADDL 207 (628)
T ss_dssp SSCEEEEEETTSC--SC-EEEEC----------SCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEEECC
T ss_pred CCCEEEEEeCCCC--ce-EEEEC----------CCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceE---EeeccC
Confidence 2267887777322 11 11111 12367889999987745555557789999999764422 222222
Q ss_pred CceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcccceeec
Q 037120 257 GTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~ 296 (489)
.....+++.. ..++.+.. .+.|...|..+++....+..
T Consensus 208 ~~P~glav~~--~~ly~tD~~~~~I~~~dk~tg~~~~~l~~ 246 (628)
T 4a0p_A 208 PHPFGLTQYQ--DYIYWTDWSRRSIERANKTSGQNRTIIQG 246 (628)
T ss_dssp SCEEEEEEET--TEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred CCceEEEEEC--CEEEEecCCCCEEEEEECCCCCceEEEec
Confidence 3345777754 45666654 88999999888876555543
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=90.75 E-value=5.1 Score=38.55 Aligned_cols=113 Identities=13% Similarity=0.137 Sum_probs=59.0
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecC---CCcEEEEEeC--
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAV---NTSRLIASDT-- 232 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~~~~l~s~s~-- 232 (489)
-..++|.|++. ++++-... +.|++++...+ .. ..+........ ..........|+|+|+ +..++++-+.
T Consensus 29 P~~~a~~pdG~-l~V~e~~g-g~I~~~~~~~g--~~-~~~~~~~~~~~-~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~ 102 (454)
T 1cru_A 29 PHALLWGPDNQ-IWLTERAT-GKILRVNPESG--SV-KTVFQVPEIVN-DADGQNGLLGFAFHPDFKNNPYIYISGTFKN 102 (454)
T ss_dssp EEEEEECTTSC-EEEEETTT-CEEEEECTTTC--CE-EEEEECTTCCC-CTTSSCSEEEEEECTTTTTSCEEEEEEEEEC
T ss_pred ceEEEEcCCCc-EEEEEcCC-CEEEEEECCCC--cE-eEEecCCcccc-ccCCCCceeEEEECCCcCcCCEEEEEEeccc
Confidence 56799999985 66665422 47888875321 11 11111110000 0012457789999995 4424444432
Q ss_pred ----------CCcEEEEECCCCC------cCceeecc-CCCCceeEEEEeecCCEEEEEeC
Q 037120 233 ----------HGVVNIWDRRVGV------LPSLELST-GSHGTLNSIQLHAENQIIFAAGK 276 (489)
Q Consensus 233 ----------dg~i~iwd~~~~~------~~~~~~~~-~h~~~v~~~~~~p~~~~l~~~~~ 276 (489)
...|.-|+..... ...+..+. ........|+|.|+|.+.++.+.
T Consensus 103 ~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 103 PKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp TTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 2345556553321 01121111 11234689999999987777665
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=89.60 E-value=1.5 Score=42.90 Aligned_cols=85 Identities=11% Similarity=0.069 Sum_probs=56.3
Q ss_pred CceeEEEECCCCcEEEEEec-CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 97 PGISALDFDCKGIYLVSATR-SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~-dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
...-.+.++|||+++++++. +.++.|+|+++....-.. +.+.+.....+...-+.+-...+|.+++ +...+-.
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~-----k~~~~~~~~~ae~e~GlGPlHt~Fd~~G-~aYTtlf 396 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAG-----KLADPRDVIVGEPELGLGPLHTTFDGRG-NAYTTLF 396 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTT-----CCSCGGGGEEECCBCCSCEEEEEECSSS-EEEEEET
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhc-----cccCcccceEeeccCCCcccEEEECCCC-ceEeeee
Confidence 34456789999999988776 899999999874332211 0112222222333344557779999987 4666666
Q ss_pred cCCCEEEEEEecc
Q 037120 176 TRSNVVSIYDIGY 188 (489)
Q Consensus 176 ~d~g~i~vwd~~~ 188 (489)
-| .+|..|++..
T Consensus 397 id-SqvvkWni~~ 408 (638)
T 3sbq_A 397 ID-SQVVKWNMEE 408 (638)
T ss_dssp TT-TEEEEEEHHH
T ss_pred ec-ceEEEEeccH
Confidence 77 8999999953
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=89.22 E-value=2.3 Score=36.19 Aligned_cols=67 Identities=6% Similarity=-0.064 Sum_probs=43.9
Q ss_pred CeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCc--------eeEEEEeecCCEEEEEeCCCeEEEEE
Q 037120 213 GLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGT--------LNSIQLHAENQIIFAAGKHGSIYLWD 284 (489)
Q Consensus 213 ~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~--------v~~~~~~p~~~~l~~~~~dg~i~lwd 284 (489)
.+..++|+|++. +.+. .+|.++-.+..+...... + +-... ..++.|+|+|.+.++ .||.|+-++
T Consensus 42 ~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W--~-~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~ 113 (236)
T 1tl2_A 42 NFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNW--M-GRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKAS 113 (236)
T ss_dssp TCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCH--H-HHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEES
T ss_pred cceeEEECCCcc-EEEE--eCCeEEEECCCCCCcccc--c-ccccEecccccccceEEEECCCCCEEEe--CCCEEEEeC
Confidence 677999999887 5444 677777666654321111 0 00112 478999999987666 679998887
Q ss_pred cCC
Q 037120 285 LRG 287 (489)
Q Consensus 285 ~~~ 287 (489)
-.+
T Consensus 114 pP~ 116 (236)
T 1tl2_A 114 PPQ 116 (236)
T ss_dssp CCC
T ss_pred CCc
Confidence 644
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.62 E-value=8.5 Score=34.30 Aligned_cols=65 Identities=9% Similarity=0.129 Sum_probs=36.5
Q ss_pred CCCcEEEEEeCC-----CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCC-----eEEEEEcCCCc
Q 037120 222 VNTSRLIASDTH-----GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHG-----SIYLWDLRGGR 289 (489)
Q Consensus 222 ~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg-----~i~lwd~~~~~ 289 (489)
++. +++.|+.+ ..+.+||+.+.+...+............+ .-++.+++.||.++ .+.+||+.+.+
T Consensus 204 ~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 204 NNL-LYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC--AVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp TTE-EEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCE-EEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE--EECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 455 77777754 46889999886533222111111111122 23677777777643 47888887643
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=88.55 E-value=17 Score=34.50 Aligned_cols=172 Identities=12% Similarity=0.088 Sum_probs=97.6
Q ss_pred CceeEEEECCCCcEEEEEec-------CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEee--CCC
Q 037120 97 PGISALDFDCKGIYLVSATR-------SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWN--LAN 167 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~-------dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~--~~~ 167 (489)
..|..-.-+++.++++..+- .|.+.+|..+....+. +++|... ...+... +..
T Consensus 151 ~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~---------ieGhaa~---------F~~~~~~g~~~~ 212 (494)
T 1bpo_A 151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP---------IEGHAAS---------FAQFKMEGNAEE 212 (494)
T ss_dssp CEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEE---------ECCSEEE---------EEEEECTTCSSE
T ss_pred ceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccch---------heeeeee---------eEEEecCCCCCC
Confidence 34777778899998875542 5788999998854443 2222221 1111111 111
Q ss_pred CCEEEEEecC--CCEEEEEEeccC-CCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 037120 168 QDEVACASTR--SNVVSIYDIGYI-SDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVG 244 (489)
Q Consensus 168 ~~~l~s~~~d--~g~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 244 (489)
..+++-+... .+.++|-++... ...+....+....+.. -..-.+--.++..++... .++--+.-|.|++||+.++
T Consensus 213 ~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fp-pe~~~DFPvamqvs~kyg-viyviTK~G~i~lyDleTg 290 (494)
T 1bpo_A 213 STLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFP-PEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETG 290 (494)
T ss_dssp EEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCC-TTSTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTC
T ss_pred ceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCC-cccccCceeEEEecccCC-EEEEEecCceEEEEecccc
Confidence 1233333321 279999999543 1111111111111101 122234456778888888 8888899999999999998
Q ss_pred CcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc
Q 037120 245 VLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT 290 (489)
Q Consensus 245 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~ 290 (489)
. ++....--...|...+-+....-++.....|.|.--.+.....
T Consensus 291 t--~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~i 334 (494)
T 1bpo_A 291 T--CIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENI 334 (494)
T ss_dssp C--EEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTH
T ss_pred e--eeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccccc
Confidence 8 5533333355666666655555566666777777666665443
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.57 E-value=9.3 Score=34.04 Aligned_cols=64 Identities=8% Similarity=0.037 Sum_probs=33.4
Q ss_pred CCCcEEEEEeCC-------CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCC-----CeEEEEEcCCC
Q 037120 222 VNTSRLIASDTH-------GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKH-----GSIYLWDLRGG 288 (489)
Q Consensus 222 ~~~~~l~s~s~d-------g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~d-----g~i~lwd~~~~ 288 (489)
++. +++.|+.+ ..+.+||+.+.+...+..+........++. -++.+++.||.+ ..+.+||+.+.
T Consensus 155 ~~~-iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 155 GGL-LYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp TTE-EEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred CCE-EEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCC
Confidence 455 66666632 358899998765332211111111112222 256667777654 35677777653
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.54 E-value=17 Score=33.26 Aligned_cols=97 Identities=7% Similarity=0.028 Sum_probs=45.6
Q ss_pred CEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecC-CcccCeeEEEEecCCCcEEEEEeC-C---------CcEE
Q 037120 169 DEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGS-DVQKGLSDLAFSAVNTSRLIASDT-H---------GVVN 237 (489)
Q Consensus 169 ~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~s~-d---------g~i~ 237 (489)
.+++.|+.+...+.+||+.... ......... . .....- +++.. ++. +++.|+. + ..+.
T Consensus 21 ~iyv~GG~~~~~~~~~d~~~~~----~~W~~~~~~----p~~~R~~~-~~~~~-~~~-lyv~GG~~~~~~~~~~~~~~v~ 89 (357)
T 2uvk_A 21 TVYIGLGSAGTAWYKLDTQAKD----KKWTALAAF----PGGPRDQA-TSAFI-DGN-LYVFGGIGKNSEGLTQVFNDVH 89 (357)
T ss_dssp EEEEECGGGTTCEEEEETTSSS----CCEEECCCC----TTCCCBSC-EEEEE-TTE-EEEECCEEECTTSCEEECCCEE
T ss_pred EEEEEeCcCCCeEEEEccccCC----CCeeECCCC----CCCcCccc-eEEEE-CCE-EEEEcCCCCCCCccceeeccEE
Confidence 4667776555788888884211 111111110 1 001111 12222 455 6676665 2 4688
Q ss_pred EEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCC
Q 037120 238 IWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKH 277 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~d 277 (489)
+||..+.+...+.... ........+...++.+++.||.+
T Consensus 90 ~yd~~~~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~GG~~ 128 (357)
T 2uvk_A 90 KYNPKTNSWVKLMSHA-PMGMAGHVTFVHNGKAYVTGGVN 128 (357)
T ss_dssp EEETTTTEEEECSCCC-SSCCSSEEEEEETTEEEEEECCC
T ss_pred EEeCCCCcEEECCCCC-CcccccceEEEECCEEEEEeCcC
Confidence 9999886533221111 01111121222577777788754
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.16 E-value=8.5 Score=34.26 Aligned_cols=64 Identities=11% Similarity=0.145 Sum_probs=35.0
Q ss_pred CCCcEEEEEeCC-----CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCC-----CeEEEEEcCCC
Q 037120 222 VNTSRLIASDTH-----GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKH-----GSIYLWDLRGG 288 (489)
Q Consensus 222 ~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~d-----g~i~lwd~~~~ 288 (489)
++. +++.|+.+ ..+.+||+.+.+...+...........++. -++.+++.||.+ ..+.+||+.+.
T Consensus 159 ~~~-iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 159 SGV-IYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp TTE-EEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCE-EEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCC
Confidence 555 77777654 468899998865332211111111112222 256666777653 35777887764
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=86.15 E-value=20 Score=34.45 Aligned_cols=29 Identities=14% Similarity=0.066 Sum_probs=22.3
Q ss_pred ceeEEEECCCCc-EEEEEecCCeEEEEeCC
Q 037120 98 GISALDFDCKGI-YLVSATRSGCLTVHDFE 126 (489)
Q Consensus 98 ~V~~~~fs~~g~-~la~g~~dg~i~vwd~~ 126 (489)
.-..|+|.|+|. .|+++...|.|++++..
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 357899999996 45556778999999754
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.46 E-value=19 Score=31.86 Aligned_cols=65 Identities=12% Similarity=0.094 Sum_probs=36.9
Q ss_pred CCCcEEEEEeCC-----CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCC-----CeEEEEEcCCCc
Q 037120 222 VNTSRLIASDTH-----GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKH-----GSIYLWDLRGGR 289 (489)
Q Consensus 222 ~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~d-----g~i~lwd~~~~~ 289 (489)
++. +++.|+.+ ..+.+||+.+.+...+...........++. -++.+++.||.+ ..|.+||+.+.+
T Consensus 206 ~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 206 NDH-IYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp TTE-EEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred CCE-EEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 455 77777754 468999998865332221111111112222 266777777664 467888887643
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.37 E-value=8.2 Score=34.71 Aligned_cols=64 Identities=8% Similarity=0.120 Sum_probs=35.4
Q ss_pred CCCcEEEEEeCCC-----cEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCC--------------CeEEE
Q 037120 222 VNTSRLIASDTHG-----VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKH--------------GSIYL 282 (489)
Q Consensus 222 ~~~~~l~s~s~dg-----~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~d--------------g~i~l 282 (489)
++. +++.|+.++ .+.+||+.+.+...+...........++. -++.+++.||.+ ..|.+
T Consensus 196 ~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~ 272 (315)
T 4asc_A 196 DGR-IIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWR 272 (315)
T ss_dssp TTE-EEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEE
T ss_pred CCE-EEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEE
Confidence 555 777777544 58889998865332221111111112222 366777777763 24677
Q ss_pred EEcCCC
Q 037120 283 WDLRGG 288 (489)
Q Consensus 283 wd~~~~ 288 (489)
||+.+.
T Consensus 273 yd~~~~ 278 (315)
T 4asc_A 273 YNEEEK 278 (315)
T ss_dssp EETTTT
T ss_pred ecCCCC
Confidence 887764
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.29 E-value=20 Score=31.89 Aligned_cols=65 Identities=11% Similarity=0.137 Sum_probs=37.0
Q ss_pred CCCcEEEEEeCC-----CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCC-----CeEEEEEcCCCc
Q 037120 222 VNTSRLIASDTH-----GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKH-----GSIYLWDLRGGR 289 (489)
Q Consensus 222 ~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~d-----g~i~lwd~~~~~ 289 (489)
++. +++.|+.+ ..+.+||+.+.+...+..+........++.+ ++.+++.||.+ ..+.+||+.+.+
T Consensus 200 ~~~-i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 200 KDK-IFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp TTE-EEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred CCE-EEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 455 67776643 4688999988653322111111122223333 67777778753 568888887643
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=84.48 E-value=6.9 Score=35.08 Aligned_cols=64 Identities=11% Similarity=0.023 Sum_probs=34.8
Q ss_pred CCCcEEEEEeCC-----CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCC-----CeEEEEEcCCC
Q 037120 222 VNTSRLIASDTH-----GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKH-----GSIYLWDLRGG 288 (489)
Q Consensus 222 ~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~d-----g~i~lwd~~~~ 288 (489)
++. +++.|+.+ ..+.+||+.+.+...+..+......-.++.+ ++.+++.||.+ ..+.+||+.+.
T Consensus 168 ~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 168 NRL-LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp TTE-EEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred CCE-EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 455 77777654 4688999987653322111111111122222 66666777654 45777887664
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.40 E-value=24 Score=31.32 Aligned_cols=65 Identities=15% Similarity=0.091 Sum_probs=37.1
Q ss_pred CCCcEEEEEeCC----CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCC------CeEEEEEcCCCc
Q 037120 222 VNTSRLIASDTH----GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKH------GSIYLWDLRGGR 289 (489)
Q Consensus 222 ~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~d------g~i~lwd~~~~~ 289 (489)
++. +++.|+.+ ..+.+||..+.+...+..+........++. -++.+++.||.+ ..+.+||+.+.+
T Consensus 55 ~~~-lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~ 129 (306)
T 3ii7_A 55 DNV-VYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTES 129 (306)
T ss_dssp TTE-EEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTE
T ss_pred CCE-EEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCc
Confidence 455 77777754 678899998865332211111111112222 266677777654 458888988754
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=82.48 E-value=30 Score=31.75 Aligned_cols=111 Identities=8% Similarity=-0.061 Sum_probs=60.0
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeec-eeeeeecCCcccCeeEEEEecC---CCcEEEEEe--
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTR-RSVTVVGSDVQKGLSDLAFSAV---NTSRLIASD-- 231 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~---~~~~l~s~s-- 231 (489)
-..++|.|++. ++++--.. |.|++++...+ .. ..+... ..+ .........|+++|+ +..++++-+
T Consensus 34 P~~ia~~pdG~-llVter~~-G~I~~v~~~~g--~~-~~v~~~~~v~----~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 34 PWGLAPLPGGD-LLVSSRDE-ATITRVDAKTG--RK-TELGEVPGVS----PSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EEEEEECTTSC-EEEEETTT-CEEEEECTTTC--CE-EEEEECTTCC----CBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred ceEEEEcCCCc-EEEEEecC-CEEEEEECCCC--cE-eeecccCcee----ecCCCCceeeEeccccccCCEEEEEEecC
Confidence 56799999985 66555435 89998875322 11 111111 111 223457899999996 331434322
Q ss_pred CCCcEEEEECCCCC--------cC-ceeecc-CCCCceeEEEEeecCCEEEEEeCC
Q 037120 232 THGVVNIWDRRVGV--------LP-SLELST-GSHGTLNSIQLHAENQIIFAAGKH 277 (489)
Q Consensus 232 ~dg~i~iwd~~~~~--------~~-~~~~~~-~h~~~v~~~~~~p~~~~l~~~~~d 277 (489)
.++.|.-|.+.... .. ++..+. .....-..|+|.|+|.+.++.+..
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~ 160 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGES 160 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCT
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCC
Confidence 45566666655411 11 111111 111234579999999877776653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=80.49 E-value=51 Score=36.58 Aligned_cols=170 Identities=11% Similarity=0.079 Sum_probs=93.1
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC-
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR- 177 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d- 177 (489)
|.--.|-.+ +.|+..+. ..|.-|++.......+ .+..+..+ .+.+|..-.-+++.+.++++|-..
T Consensus 108 VvfWkWis~-~~l~lVT~-~aVyHW~~~~~s~P~k-------~fdR~~~L-----~~~QIinY~~d~~~kW~~l~gi~~~ 173 (1630)
T 1xi4_A 108 VTFWKWISL-NTVALVTD-NAVYHWSMEGESQPVK-------MFDRHSSL-----AGCQIINYRTDAKQKWLLLTGISAQ 173 (1630)
T ss_pred ceEEEecCC-CeeEEEcC-CeEEEeccCCCCccHH-------HHhcchhc-----ccCeeEEeeeCCCCCeEEEEeeccC
Confidence 444444322 34555554 4688899965111110 11222222 234477778888888777776421
Q ss_pred ----CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEe--cCCCcEEEEEeC---CCcEEEEECCCC--Cc
Q 037120 178 ----SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFS--AVNTSRLIASDT---HGVVNIWDRRVG--VL 246 (489)
Q Consensus 178 ----~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~~l~s~s~---dg~i~iwd~~~~--~~ 246 (489)
.|.+.+|.+....+. .+.||......+... +....+|+.+.. .+.++|-++... ..
T Consensus 174 ~~~v~G~mQLyS~er~~sQ-------------~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~ 240 (1630)
T 1xi4_A 174 QNRVVGAMQLYSVDRKVSQ-------------PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN 240 (1630)
T ss_pred CCcccceeeeeecccccch-------------hhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCC
Confidence 278888888432211 125555444443332 111113333322 368999988653 11
Q ss_pred Cc-----eeeccC---CCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceee
Q 037120 247 PS-----LELSTG---SHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 247 ~~-----~~~~~~---h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~ 295 (489)
+. +..+.. -.+--.++..++.-..++.-+.-|.|.+||+.++.++..-.
T Consensus 241 ~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~r 297 (1630)
T 1xi4_A 241 QPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNR 297 (1630)
T ss_pred CCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhcc
Confidence 11 111111 12334478888888888999999999999999998855433
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 489 | ||||
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 6e-04 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 7e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.001 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 0.001 |
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.3 bits (90), Expect = 6e-04
Identities = 9/88 (10%), Positives = 24/88 (27%), Gaps = 1/88 (1%)
Query: 211 QKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQI 270
+ ++ + F N + ++D R + S+ ++
Sbjct: 226 ESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 271 IFAAGKHGSIYLWDLRGGRTSAPFHNHK 298
+ A + +WD + H
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHD 312
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 39.3 bits (90), Expect = 7e-04
Identities = 10/74 (13%), Positives = 27/74 (36%), Gaps = 3/74 (4%)
Query: 211 QKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQI 270
G++ ++FS + L+A N+WD + G ++ + + +
Sbjct: 270 ICGITSVSFSK-SGRLLLAGYDDFNCNVWDALKADR--AGVLAGHDNRVSCLGVTDDGMA 326
Query: 271 IFAAGKHGSIYLWD 284
+ + +W+
Sbjct: 327 VATGSWDSFLKIWN 340
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 0.001
Identities = 7/70 (10%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 216 DLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAG 275
L F+ +++ ++N W G + + ++ S + +++ I
Sbjct: 270 SLKFAY-CGKWFVSTGKDNLLNAWRTPYG---ASIFQSKESSSVLSCDISVDDKYIVTGS 325
Query: 276 KHGSIYLWDL 285
++++
Sbjct: 326 GDKKATVYEV 335
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 38.6 bits (88), Expect = 0.001
Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 2/87 (2%)
Query: 215 SDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAA 274
S+ S L++ + +WD G+ L G + + H+ + I +
Sbjct: 208 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC--LMTLVGHDNWVRGVLFHSGGKFILSC 265
Query: 275 GKHGSIYLWDLRGGRTSAPFHNHKEVC 301
++ +WD + R + H+
Sbjct: 266 ADDKTLRVWDYKNKRCMKTLNAHEHFV 292
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 489 | |||
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.98 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.97 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.97 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.96 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.96 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.96 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.95 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.93 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.93 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.92 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.91 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.9 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.87 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.86 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.86 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.86 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.84 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.83 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.83 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.82 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.82 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.82 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.79 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.77 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.76 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.66 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.61 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.57 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.55 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.48 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.47 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.46 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.29 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.23 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.19 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.14 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.08 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.94 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.88 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.77 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.68 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.63 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.62 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.56 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.46 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.43 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.39 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.35 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.34 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.26 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.25 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.14 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.1 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.05 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.83 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.58 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.31 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.31 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.22 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 95.71 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 95.08 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 94.68 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 94.64 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 93.69 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 93.12 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 92.81 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 92.29 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 90.52 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 90.39 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 88.43 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 86.85 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 86.55 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 86.15 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 85.39 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 85.0 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 80.46 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4e-36 Score=279.35 Aligned_cols=305 Identities=13% Similarity=0.185 Sum_probs=230.0
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|...|++|+|+|++++||+|+.||+|+|||+.+.+... .+.+|... |.+++|+|++. ++
T Consensus 13 L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~--------------~~~~h~~~---V~~~~~~~~~~-~~ 74 (317)
T d1vyhc1 13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER--------------TLKGHTDS---VQDISFDHSGK-LL 74 (317)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE--------------EECCCSSC---EEEEEECTTSS-EE
T ss_pred EcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEE--------------EEeCCCCc---EEEEeeecccc-cc
Confidence 55677889999999999999999999999999998844333 23456665 99999999985 77
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
+++..+ +.+.+|+..... ....+.+|...+.++.|+|+++ .+++++.|+.+++||+++++ ....
T Consensus 75 ~~~~~~-~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~--~~~~ 138 (317)
T d1vyhc1 75 ASCSAD-MTIKLWDFQGFE------------CIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGY--CVKT 138 (317)
T ss_dssp EEEETT-SCCCEEETTSSC------------EEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCC--EEEE
T ss_pred cccccc-cccccccccccc------------cccccccccccceeeeccCCCc-eEEeeccCcceeEeecccce--eeeE
Confidence 777777 899999983221 1112367888999999999999 99999999999999999877 6667
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccce
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEI 331 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i 331 (489)
+.+|...+.+++|+|++.++++++.|+.|++||+++++.+..+..|... +.++.|+|++........ ...
T Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~------~~~ 208 (317)
T d1vyhc1 139 FTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV----VECISWAPESSYSSISEA------TGS 208 (317)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC----EEEEEECCSCGGGGGGGC------CSC
T ss_pred EccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCC----ceEEEEeeccccceeecc------ccc
Confidence 7789999999999999999999999999999999999999899888877 999999999866532111 111
Q ss_pred eEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEE
Q 037120 332 HSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLL 411 (489)
Q Consensus 332 ~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vw 411 (489)
........+..+++++.++. ..+++...+........ . ...+..++|+|+ +.++++|+.||.|+||
T Consensus 209 ~~~~~~~~~~~~~~~~~d~~-i~~~~~~~~~~~~~~~~------~------~~~v~~~~~~~~-~~~l~s~~~dg~i~iw 274 (317)
T d1vyhc1 209 ETKKSGKPGPFLLSGSRDKT-IKMWDVSTGMCLMTLVG------H------DNWVRGVLFHSG-GKFILSCADDKTLRVW 274 (317)
T ss_dssp C-------CCEEEEEETTSE-EEEEETTTTEEEEEEEC------C------SSCEEEEEECSS-SSCEEEEETTTEEEEE
T ss_pred eeeeeccCCceeEeccCCCE-EEEEECCCCcEEEEEeC------C------CCCEEEEEECCC-CCEEEEEECCCeEEEE
Confidence 12223344555555554432 22333333222111100 0 011223455555 5677888999999999
Q ss_pred eccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 412 DFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 412 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
|+.++ +.+..+. +|.+.|++++|+|++++||+|+.||+|+||.
T Consensus 275 d~~~~----------~~~~~~~------------~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 275 DYKNK----------RCMKTLN------------AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CCTTS----------CCCEEEE------------CCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred ECCCC----------cEEEEEc------------CCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 99988 7788887 9999999999999999999999999999993
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.3e-36 Score=281.81 Aligned_cols=286 Identities=15% Similarity=0.163 Sum_probs=211.6
Q ss_pred cCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 94 FGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
.|...|.|++|+|+|++||+|+ ||.|+|||+....... .........|... |.+++|+|++. .|++
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~---------~~~~~~~~~h~~~---I~~v~~s~dg~-~l~s 114 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS---------PVSQLDCLNRDNY---IRSCKLLPDGC-TLIV 114 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS---------CSEEEECSCTTSB---EEEEEECTTSS-EEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccc---------eeEEeeecCCCCc---EEEEEEcCCCC-EEEE
Confidence 4667899999999999999998 8999999998743222 1112222345555 99999999986 7788
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST 253 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 253 (489)
++.| |+|++||+..... . ....+.+|...+..++|+|++. ++++++.|+.|++||+++++ +.....
T Consensus 115 ~~~d-g~i~iwd~~~~~~----~------~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~~~--~~~~~~ 180 (337)
T d1gxra_ 115 GGEA-STLSIWDLAAPTP----R------IKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQT--LVRQFQ 180 (337)
T ss_dssp EESS-SEEEEEECCCC------E------EEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTE--EEEEEC
T ss_pred eecc-ccccccccccccc----c------cccccccccccccccccccccc-cccccccccccccccccccc--cccccc
Confidence 8888 9999999843211 1 1222367888999999999998 99999999999999999876 566667
Q ss_pred CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeE
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHS 333 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~ 333 (489)
.|...|.+++|++++..+++++.||.|++||+++++.+..+. +... |.+++|+|++..++.
T Consensus 181 ~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~----i~~l~~~~~~~~l~~-------------- 241 (337)
T d1gxra_ 181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQ----IFSLGYCPTGEWLAV-------------- 241 (337)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSC----EEEEEECTTSSEEEE--------------
T ss_pred ccccccccccccccccccccccccccccccccccceeecccc-cccc----eEEEEEcccccccce--------------
Confidence 899999999999999999999999999999999988766554 3444 777777777665543
Q ss_pred EEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEec
Q 037120 334 IDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDF 413 (489)
Q Consensus 334 ~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~ 413 (489)
++.++. ..+++...+........ ...+..+.|+|++ .++++|+.|+.|++||+
T Consensus 242 ------------~~~d~~-i~i~d~~~~~~~~~~~~-------------~~~i~~v~~s~~g-~~l~s~s~Dg~i~iwd~ 294 (337)
T d1gxra_ 242 ------------GMESSN-VEVLHVNKPDKYQLHLH-------------ESCVLSLKFAYCG-KWFVSTGKDNLLNAWRT 294 (337)
T ss_dssp ------------EETTSC-EEEEETTSSCEEEECCC-------------SSCEEEEEECTTS-SEEEEEETTSEEEEEET
T ss_pred ------------eccccc-ccccccccccccccccc-------------ccccceEEECCCC-CEEEEEeCCCeEEEEEC
Confidence 222111 11222221111111000 0112335666664 57788899999999999
Q ss_pred cCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 414 FPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
.++ +.+..+ .|.+.|++++|+|++++||+|+.||+|+||.
T Consensus 295 ~~~----------~~~~~~-------------~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWd 334 (337)
T d1gxra_ 295 PYG----------ASIFQS-------------KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp TTC----------CEEEEE-------------ECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred CCC----------CEEEEc-------------cCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 988 666543 4889999999999999999999999999995
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.4e-34 Score=276.57 Aligned_cols=310 Identities=14% Similarity=0.178 Sum_probs=203.3
Q ss_pred cCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCC----cccccccccCCCCCCceeEEEeeCCCCC
Q 037120 94 FGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGL----KEDQSKHLLHIPLPQQLDAVRWNLANQD 169 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~----~~~~~~~~~h~~~~~~V~~v~~~~~~~~ 169 (489)
.|...|+||+|+|+|++||+|+ |++|+|||+.+.............. .........|... |.+++|+|++.
T Consensus 60 ~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---V~~l~~s~~~~- 134 (388)
T d1erja_ 60 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY---IRSVCFSPDGK- 134 (388)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCB---EEEEEECTTSS-
T ss_pred CCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCC---EEEEEECCCCC-
Confidence 4778899999999999999997 8999999998865543210000000 0000111223344 99999999985
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
+|++++.| |.|++||.... .. .....+|...|.+++|++++. .+++++.++.+++||.++.. ..
T Consensus 135 ~l~s~~~d-g~v~i~~~~~~-----~~-------~~~~~~h~~~v~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~--~~ 198 (388)
T d1erja_ 135 FLATGAED-RLIRIWDIENR-----KI-------VMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQ--CS 198 (388)
T ss_dssp EEEEEETT-SCEEEEETTTT-----EE-------EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTE--EE
T ss_pred cceecccc-ccccccccccc-----cc-------ccccccccccccccccccccc-cccccccceeeeeeeccccc--cc
Confidence 88888888 99999998322 11 122377999999999999998 99999999999999999765 34
Q ss_pred eeccCCCCceeEEEEe-ecCCEEEEEeCCCeEEEEEcCCCcccceee-------cCCccCCCCeeEEEeCCCCcceeecc
Q 037120 250 ELSTGSHGTLNSIQLH-AENQIIFAAGKHGSIYLWDLRGGRTSAPFH-------NHKEVCHLPLTSLKLASMLEKIGTLK 321 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~-p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~-------~~~~~~~~~v~~l~~~~~~~~i~~~~ 321 (489)
.....+. ...++.++ +++.++++++.||.|++||++++..+..+. +|... |++++|+|++..+++
T Consensus 199 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~----v~~l~~s~~~~~l~s-- 271 (388)
T d1erja_ 199 LTLSIED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS----VYSVVFTRDGQSVVS-- 271 (388)
T ss_dssp EEEECSS-CEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSC----EEEEEECTTSSEEEE--
T ss_pred ccccccc-ccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCC----EEEEEECCCCCEEEE--
Confidence 3343444 44555555 478899999999999999999987655443 23333 666666666555543
Q ss_pred ccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEe
Q 037120 322 AQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVG 401 (489)
Q Consensus 322 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 401 (489)
++.++. ..++++..+........+...............+..++|+|+ +.++++
T Consensus 272 ------------------------~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s 325 (388)
T d1erja_ 272 ------------------------GSLDRS-VKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN-DEYILS 325 (388)
T ss_dssp ------------------------EETTSE-EEEEEC---------------CEEEEEECCSSCEEEEEECGG-GCEEEE
T ss_pred ------------------------EECCCc-EEEEeccCCccccccccccccceeeecccccceEEEEEECCC-CCEEEE
Confidence 322221 111111111100000000000000000000011233556665 567889
Q ss_pred ecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEE------eeCCCCeEEeccCcceeEEE
Q 037120 402 SSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACV------THPLNNTIVAGTKNSSLLVV 475 (489)
Q Consensus 402 gs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va------~~p~~~~i~sgs~dg~i~v~ 475 (489)
|+.||.|++||+.++ +.+..+. +|.+.|++++ |+|++.+|||||.||+|+||
T Consensus 326 g~~dg~i~vwd~~~~----------~~~~~l~------------~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW 383 (388)
T d1erja_ 326 GSKDRGVLFWDKKSG----------NPLLMLQ------------GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 383 (388)
T ss_dssp EETTSEEEEEETTTC----------CEEEEEE------------CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEE
T ss_pred EeCCCEEEEEECCCC----------cEEEEEe------------CCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEE
Confidence 999999999999999 8888888 9999999997 46789999999999999999
Q ss_pred eccc
Q 037120 476 SQKQ 479 (489)
Q Consensus 476 ~~~~ 479 (489)
.-|+
T Consensus 384 ~~~k 387 (388)
T d1erja_ 384 KYKK 387 (388)
T ss_dssp EEEE
T ss_pred eeee
Confidence 8875
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=6.1e-34 Score=267.96 Aligned_cols=258 Identities=16% Similarity=0.207 Sum_probs=199.2
Q ss_pred ccccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 91 RRSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
++.+|...|++++|+|++++||+|+.||+|+|||+.+..... . +.+|... |.+++|+|++. .
T Consensus 50 tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~--------~------~~~~~~~---v~~v~~~~~~~-~ 111 (340)
T d1tbga_ 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH--------A------IPLRSSW---VMTCAYAPSGN-Y 111 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE--------E------EECSCSC---EEEEEECTTSS-E
T ss_pred EECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE--------E------Eeccccc---EEeeEeeccce-e
Confidence 467788899999999999999999999999999998855443 1 2345555 99999999986 7
Q ss_pred EEEEecCCCEEEEEEeccCCCCCcee--ee-------------------------------eceeeeeecCCcccCeeEE
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEV--LK-------------------------------TRRSVTVVGSDVQKGLSDL 217 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~--~~-------------------------------~~~~~~~~~~~h~~~v~~~ 217 (489)
+++++.| +.+++|+........... +. ...........+...+...
T Consensus 112 l~~~~~d-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (340)
T d1tbga_ 112 VACGGLD-NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSL 190 (340)
T ss_dssp EEEEETT-CCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEE
T ss_pred eeeeccc-ceeecccccccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeee
Confidence 7788877 999999975432211000 00 0000011123356677888
Q ss_pred EEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecC
Q 037120 218 AFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNH 297 (489)
Q Consensus 218 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~ 297 (489)
.+.+.+. ++++++.|+.|++||+++++ ++..+.+|...|++++|+|+++++++|+.||.|++||++..+.+..+...
T Consensus 191 ~~~~~~~-~~~~~~~d~~v~i~d~~~~~--~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~ 267 (340)
T d1tbga_ 191 SLAPDTR-LFVSGACDASAKLWDVREGM--CRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267 (340)
T ss_dssp EECTTSS-EEEEEETTTEEEEEETTTTE--EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCT
T ss_pred ccccccc-eeEEeecCceEEEEECCCCc--EEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccc
Confidence 8888888 99999999999999999876 66677899999999999999999999999999999999987655444322
Q ss_pred CccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCC
Q 037120 298 KEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDS 377 (489)
Q Consensus 298 ~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (489)
... .+|++ +.|+|+
T Consensus 268 ~~~--~~i~~--------------------------~~~s~~-------------------------------------- 281 (340)
T d1tbga_ 268 NII--CGITS--------------------------VSFSKS-------------------------------------- 281 (340)
T ss_dssp TCC--SCEEE--------------------------EEECSS--------------------------------------
T ss_pred ccc--CceEE--------------------------EEECCC--------------------------------------
Confidence 111 11333 333332
Q ss_pred CccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEee
Q 037120 378 NNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTH 457 (489)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~ 457 (489)
+.++++|+.||.|+|||+.++ +.+..+. +|.+.|++++|+
T Consensus 282 ------------------~~~l~~g~~dg~i~iwd~~~~----------~~~~~~~------------~H~~~V~~l~~s 321 (340)
T d1tbga_ 282 ------------------GRLLLAGYDDFNCNVWDALKA----------DRAGVLA------------GHDNRVSCLGVT 321 (340)
T ss_dssp ------------------SCEEEEEETTSCEEEEETTTC----------CEEEEEC------------CCSSCEEEEEEC
T ss_pred ------------------CCEEEEEECCCEEEEEECCCC----------cEEEEEc------------CCCCCEEEEEEe
Confidence 456778889999999999988 7888877 999999999999
Q ss_pred CCCCeEEeccCcceeEEEe
Q 037120 458 PLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 458 p~~~~i~sgs~dg~i~v~~ 476 (489)
|++.+|||||.||.|+||.
T Consensus 322 ~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 322 DDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TTSSCEEEEETTSCEEEEC
T ss_pred CCCCEEEEEccCCEEEEeC
Confidence 9999999999999999995
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=6.5e-34 Score=265.35 Aligned_cols=256 Identities=11% Similarity=0.125 Sum_probs=192.3
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..|...|+|++|+|+|++||+|+.||+|+|||+....... ...+.+|... |.+++|+|++. .+
T Consensus 54 ~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~------------~~~~~~~~~~---v~~v~~s~d~~-~l 117 (311)
T d1nr0a1 54 YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHIL------------KTTIPVFSGP---VKDISWDSESK-RI 117 (311)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCE------------EEEEECSSSC---EEEEEECTTSC-EE
T ss_pred EcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccccc------------ccccccccCc---ccccccccccc-cc
Confidence 45577789999999999999999999999999998833221 1223456655 99999999987 45
Q ss_pred EEEecC-CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee
Q 037120 172 ACASTR-SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE 250 (489)
Q Consensus 172 ~s~~~d-~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 250 (489)
++++.+ +..++||++.... ...++.+|...|++++|+|+++..|++|+.|+.|++||+++.+ +..
T Consensus 118 ~~~~~~~~~~~~v~~~~~~~------------~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~--~~~ 183 (311)
T d1nr0a1 118 AAVGEGRERFGHVFLFDTGT------------SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK--FKS 183 (311)
T ss_dssp EEEECCSSCSEEEEETTTCC------------BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE--EEE
T ss_pred cccccccccccccccccccc------------ccccccccccccccccccccceeeecccccccccccccccccc--ccc
Confidence 555432 3679999994321 1122478999999999999998678999999999999999876 666
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccc
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQE 330 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~ 330 (489)
....|...|++++|+|+++++++++.||.|++||++++..+..+..... ....+...
T Consensus 184 ~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~-----------------------~~~~h~~~ 240 (311)
T d1nr0a1 184 TFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSL-----------------------KNVAHSGS 240 (311)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTS-----------------------SSCSSSSC
T ss_pred ccccccccccccccCcccccccccccccccccccccccccccccccccc-----------------------cccccccc
Confidence 7779999999999999999999999999999999998776555542211 01123334
Q ss_pred eeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 331 IHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 331 i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
|.+++|+|+ +.++++|+.|+.|+|
T Consensus 241 V~~~~~s~~--------------------------------------------------------~~~l~tgs~Dg~v~i 264 (311)
T d1nr0a1 241 VFGLTWSPD--------------------------------------------------------GTKIASASADKTIKI 264 (311)
T ss_dssp EEEEEECTT--------------------------------------------------------SSEEEEEETTSEEEE
T ss_pred ccccccCCC--------------------------------------------------------CCEEEEEeCCCeEEE
Confidence 455555443 346777889999999
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCC-ceEEEEeeCCCCeEEeccCcceeEEEecc
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSE-GVTACVTHPLNNTIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~va~~p~~~~i~sgs~dg~i~v~~~~ 478 (489)
||+.++ +.+..+. .|.. ....+++.+++..|++++.||.|.+|..+
T Consensus 265 wd~~t~----------~~~~~l~------------~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 265 WNVATL----------KVEKTIP------------VGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EETTTT----------EEEEEEE------------CCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred EECCCC----------cEEEEEE------------CCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence 999988 7766665 3432 23334455566789999999999999753
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.2e-32 Score=253.82 Aligned_cols=249 Identities=13% Similarity=0.110 Sum_probs=193.9
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..+.+++++|+|+.||.++ ++.|.+||+++..... .+.+|... |++++|+|++. +|++|+.
T Consensus 18 ~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~--------------~~~~H~~~---v~~~~~sp~g~-~latg~~ 78 (311)
T d1nr0a1 18 GTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTE--------------IYTEHSHQ---TTVAKTSPSGY-YCASGDV 78 (311)
T ss_dssp TCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCE--------------EECCCSSC---EEEEEECTTSS-EEEEEET
T ss_pred CCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeE--------------EEcCCCCC---EEEEEEeCCCC-eEecccc
Confidence 3467889999999999986 5679999998733222 23567666 99999999985 8888888
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeC--CCcEEEEECCCCCcCceeeccC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT--HGVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~--dg~i~iwd~~~~~~~~~~~~~~ 254 (489)
| |+|+|||+...... + ...+.+|...|.+++|+|+++ +|++++. +..+++||+.+++ ....+.+
T Consensus 79 d-g~i~iwd~~~~~~~----~------~~~~~~~~~~v~~v~~s~d~~-~l~~~~~~~~~~~~v~~~~~~~--~~~~l~~ 144 (311)
T d1nr0a1 79 H-GNVRIWDTTQTTHI----L------KTTIPVFSGPVKDISWDSESK-RIAAVGEGRERFGHVFLFDTGT--SNGNLTG 144 (311)
T ss_dssp T-SEEEEEESSSTTCC----E------EEEEECSSSCEEEEEECTTSC-EEEEEECCSSCSEEEEETTTCC--BCBCCCC
T ss_pred C-ceEeeeeeeccccc----c------ccccccccCcccccccccccc-cccccccccccccccccccccc--ccccccc
Confidence 8 99999999543211 1 112367889999999999999 8888875 5669999999876 5566779
Q ss_pred CCCceeEEEEeecCCE-EEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeE
Q 037120 255 SHGTLNSIQLHAENQI-IFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHS 333 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~-l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~ 333 (489)
|...|++++|+|++++ +++|+.||.|++||+++++....+..|... |+++.|+|+
T Consensus 145 h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~----i~~v~~~p~-------------------- 200 (311)
T d1nr0a1 145 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKF----VHSVRYNPD-------------------- 200 (311)
T ss_dssp CSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSC----EEEEEECTT--------------------
T ss_pred cccccccccccccceeeeccccccccccccccccccccccccccccc----ccccccCcc--------------------
Confidence 9999999999999986 667788999999999998877777777655 666655543
Q ss_pred EEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEec
Q 037120 334 IDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDF 413 (489)
Q Consensus 334 ~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~ 413 (489)
+.++++|+.|+.|++||+
T Consensus 201 --------------------------------------------------------------~~~l~~~~~d~~v~~~d~ 218 (311)
T d1nr0a1 201 --------------------------------------------------------------GSLFASTGGDGTIVLYNG 218 (311)
T ss_dssp --------------------------------------------------------------SSEEEEEETTSCEEEEET
T ss_pred --------------------------------------------------------------cccccccccccccccccc
Confidence 335566788999999999
Q ss_pred cCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 414 FPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
..+ +.+..++ .......+|.+.|++++|+|++++|++|+.||.|+||..+.
T Consensus 219 ~~~----------~~~~~~~-----~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t 269 (311)
T d1nr0a1 219 VDG----------TKTGVFE-----DDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVAT 269 (311)
T ss_dssp TTC----------CEEEECB-----CTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred ccc----------ccccccc-----ccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence 877 4443332 11122348999999999999999999999999999997543
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=8.4e-33 Score=264.64 Aligned_cols=330 Identities=8% Similarity=0.018 Sum_probs=213.7
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
+.|+|++|+|+|++||+|+.||.|+|||+.+.+. .....+.+|... |.+++|+|++. +|++++.
T Consensus 8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~------------~~~~~l~gH~~~---V~~l~fsp~~~-~l~s~s~ 71 (371)
T d1k8kc_ 8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW------------VQVHELKEHNGQ---VTGVDWAPDSN-RIVTCGT 71 (371)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE------------EEEEEEECCSSC---EEEEEEETTTT-EEEEEET
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCE------------EEEEEecCCCCC---EEEEEECCCCC-EEEEEEC
Confidence 5699999999999999999999999999976332 222234567777 99999999985 7888888
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC--ceeeccC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP--SLELSTG 254 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~ 254 (489)
| ++|+|||+.... ... ...+.+|...|++++|+|+++ .|++++.|+.|++|++...... .......
T Consensus 72 D-~~i~vWd~~~~~------~~~----~~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~ 139 (371)
T d1k8kc_ 72 D-RNAYVWTLKGRT------WKP----TLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKP 139 (371)
T ss_dssp T-SCEEEEEEETTE------EEE----EEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTT
T ss_pred C-CeEEEEeecccc------ccc----ccccccccccccccccccccc-cceeecccCcceeeeeecccccccccccccc
Confidence 8 999999994321 111 122367889999999999999 9999999999999998875432 2334457
Q ss_pred CCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEE
Q 037120 255 SHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSI 334 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~ 334 (489)
|...|.+++|+|++++|++|+.||+|++||+............... . -.+.+..+ .....+...|.++
T Consensus 140 ~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~----~~~~~~~~~v~~~ 207 (371)
T d1k8kc_ 140 IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG-----S---KMPFGELM----FESSSSCGWVHGV 207 (371)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTB-----S---CCCTTCEE----EECCCCSSCEEEE
T ss_pred cccccccccccccccceeccccCcEEEEEeeccCcccccccccccc-----c---cccceeee----eeccCccCcEEEE
Confidence 8999999999999999999999999999999875432211110000 0 00111111 2223455678888
Q ss_pred EeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEecc
Q 037120 335 DLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFF 414 (489)
Q Consensus 335 ~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~ 414 (489)
+|+|++.++++++.|+. ..+++...+........ . ...+..++|++++ .++++|+ |+.+++|+..
T Consensus 208 ~~s~~g~~l~s~~~d~~-i~iwd~~~~~~~~~~~~------~------~~~v~s~~fs~d~-~~la~g~-d~~~~~~~~~ 272 (371)
T d1k8kc_ 208 CFSANGSRVAWVSHDST-VCLADADKKMAVATLAS------E------TLPLLAVTFITES-SLVAAGH-DCFPVLFTYD 272 (371)
T ss_dssp EECSSSSEEEEEETTTE-EEEEEGGGTTEEEEEEC------S------SCCEEEEEEEETT-EEEEEET-TSSCEEEEEE
T ss_pred EeecccccccccccCCc-ceEEeeecccceeeeec------c------cccceeeeecCCC-CEEEEEc-CCceEEEEee
Confidence 89998888777765543 33444444332221110 0 1223446777775 5666654 7777777665
Q ss_pred CCCCCCee---eccCccc-----chhh-Hh---------h-hhcccCCcccCCCceEEEEeeCCCC----eEEeccCcce
Q 037120 415 PGSSSPSH---VDYNEDI-----ESLS-ER---------T-KLKKENRFVPLSEGVTACVTHPLNN----TIVAGTKNSS 471 (489)
Q Consensus 415 ~~~~~~~~---~~~~~~~-----~~~~-~~---------~-~~~~~~~~~~h~~~V~~va~~p~~~----~i~sgs~dg~ 471 (489)
........ .+..... .... .. . ..........|.+.|++++++|.+. .|+|+|.||.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~ 352 (371)
T d1k8kc_ 273 SAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGG 352 (371)
T ss_dssp TTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSE
T ss_pred CCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCe
Confidence 43111000 0000000 0000 00 0 0001111235999999999988653 6999999999
Q ss_pred eEEEeccccc
Q 037120 472 LLVVSQKQQC 481 (489)
Q Consensus 472 i~v~~~~~~~ 481 (489)
|+||..+...
T Consensus 353 v~iW~~~~~~ 362 (371)
T d1k8kc_ 353 MSIWDVRSLE 362 (371)
T ss_dssp EEEEEHHHHH
T ss_pred EEEEeCCcCh
Confidence 9999876543
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.98 E-value=9.7e-31 Score=242.09 Aligned_cols=289 Identities=15% Similarity=0.124 Sum_probs=189.3
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+.+|...|++++|+|+|++||+|+.||+|+|||+++....... ..+|... |++++|+|++. ++
T Consensus 8 ~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~-------------~~~h~~~---v~~v~~~~~g~-~~ 70 (299)
T d1nr0a2 8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF-------------PDVHATM---ITGIKTTSKGD-LF 70 (299)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS-------------SCSCSSC---EEEEEECTTSC-EE
T ss_pred cCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEE-------------cCCCCCc---EEEEEeeccce-ee
Confidence 5668888999999999999999999999999999885544421 1235544 99999999974 55
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 251 (489)
++ +.| +.+++|++........ ... ...|...+.+++|++++. .+++++ ++.+++|+... ....
T Consensus 71 ~~-~~d-~~v~~~~~~~~~~~~~-----~~~----~~~~~~~~~~~~~s~~g~-~~~~~~-~~~i~~~~~~~----~~~~ 133 (299)
T d1nr0a2 71 TV-SWD-DHLKVVPAGGSGVDSS-----KAV----ANKLSSQPLGLAVSADGD-IAVAAC-YKHIAIYSHGK----LTEV 133 (299)
T ss_dssp EE-ETT-TEEEEECSSSSSSCTT-----SCC----EEECSSCEEEEEECTTSS-CEEEEE-SSEEEEEETTE----EEEE
T ss_pred cc-cce-eeEEEeccCCcccccc-----ccc----cccccccccccccccccc-cccccc-ccccccccccc----cccc
Confidence 44 445 9999999853321110 111 134667899999999998 655554 67999999653 2222
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccc-eeecCCccCCCCeeEEEeCCCCcceeeccccceeeccc
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSA-PFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQE 330 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~-~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~ 330 (489)
. ....+.+++|+|+++++++++.||.|++||+++++... ....|... |++++|+|++..++
T Consensus 134 ~--~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~------------ 195 (299)
T d1nr0a2 134 P--ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE----ITSVAFSNNGAFLV------------ 195 (299)
T ss_dssp E--CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSC----EEEEEECTTSSEEE------------
T ss_pred c--ccccccccccccccccccccccccccccccccccccccccccccccc----cccccccccccccc------------
Confidence 2 24567899999999999999999999999998766432 22344544 66666666655443
Q ss_pred eeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 331 IHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 331 i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
+++.++. ..+++...+....... .+.. ....+..++|+|+ +.++++|+.|+.|+|
T Consensus 196 --------------~~~~d~~-i~~~~~~~~~~~~~~~---~~~~------h~~~v~~l~~s~~-~~~l~sgs~dg~i~i 250 (299)
T d1nr0a2 196 --------------ATDQSRK-VIPYSVANNFELAHTN---SWTF------HTAKVACVSWSPD-NVRLATGSLDNSVIV 250 (299)
T ss_dssp --------------EEETTSC-EEEEEGGGTTEESCCC---CCCC------CSSCEEEEEECTT-SSEEEEEETTSCEEE
T ss_pred --------------ccccccc-cccccccccccccccc---cccc------ccccccccccccc-ccceEEEcCCCEEEE
Confidence 3322222 1233332222111000 0000 0112334567766 467788899999999
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEec
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQ 477 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~ 477 (489)
||+.+. ......... ..+...|.+++| |++.+|+|||.||.|+||.-
T Consensus 251 wd~~~~----------~~~~~~~~~---------~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl 297 (299)
T d1nr0a2 251 WNMNKP----------SDHPIIIKG---------AHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNV 297 (299)
T ss_dssp EETTCT----------TSCCEEETT---------SSTTSCEEEEEE-EETTEEEEEETTSCEEEEEC
T ss_pred EECCCC----------CcceEEEec---------CCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEec
Confidence 999876 222211100 034456776655 55789999999999999964
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.3e-28 Score=232.17 Aligned_cols=305 Identities=10% Similarity=0.095 Sum_probs=207.9
Q ss_pred cccCCCc-eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 92 RSFGKPG-ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 92 ~~~~~~~-V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
+..|... |+|++| +|++||+|+.||+|+|||+.+.+... .+.+|... |.+++|+|++ .
T Consensus 8 L~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~--------------~l~~H~~~---V~~l~~s~~~--~ 66 (355)
T d1nexb2 8 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL--------------QLSGHDGG---VWALKYAHGG--I 66 (355)
T ss_dssp EECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEE--------------EEECCSSC---EEEEEEETTT--E
T ss_pred ECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEE--------------EEECCCCC---EEEEEEcCCC--E
Confidence 4456666 567766 57899999999999999998855444 23556666 9999999864 7
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCc--
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPS-- 248 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-- 248 (489)
|++++.| ++|++|++... ....... ...+...+..+.+.+++. .+++++.|+.|++||+++.....
T Consensus 67 l~s~s~D-~~i~iw~~~~~-----~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~iw~~~~~~~~~~~ 134 (355)
T d1nexb2 67 LVSGSTD-RTVRVWDIKKG-----CCTHVFE-----GHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDH 134 (355)
T ss_dssp EEEEETT-CCEEEEETTTT-----EEEEEEC-----CCSSCEEEEEEEEETTEE-EEEEEETTSEEEEEECCC-------
T ss_pred EEEEecc-ccccccccccc-----ccccccc-----cccccccccccccccccc-eeeeecCCCcEEEEEccCCceeccc
Confidence 8888888 99999999432 1111111 133444566677888887 99999999999999998753210
Q ss_pred -------------------eeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEE
Q 037120 249 -------------------LELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLK 309 (489)
Q Consensus 249 -------------------~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~ 309 (489)
......|... ...+.++++++++++.|+.|++||+++++.+..+..+... +.++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~----~~~~~ 208 (355)
T d1nexb2 135 GEEHDYPLVFHTPEENPYFVGVLRGHMAS--VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR----IYSTI 208 (355)
T ss_dssp ----CCCEEESCTTTCTTEEEEEECCSSC--EEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEE
T ss_pred cccceeccceeccccccceeeeeeecccc--ccccccccceeeeecccceeeeeecccccceeeeeccccc----ccccc
Confidence 0011122222 3456678899999999999999999999888888877766 99999
Q ss_pred eCCCCcceeecc----------------ccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCC
Q 037120 310 LASMLEKIGTLK----------------AQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAW 373 (489)
Q Consensus 310 ~~~~~~~i~~~~----------------~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 373 (489)
|++++..+.... .....+...|.++.+++ .++++++.++. ..+++...+........
T Consensus 209 ~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~-i~iwd~~~~~~~~~~~~---- 281 (355)
T d1nexb2 209 YDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGS-IRGWDANDYSRKFSYHH---- 281 (355)
T ss_dssp EETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSE-EEEEETTTCCEEEEEEC----
T ss_pred ccccceeeecccccceEEeeecccccccccccccccccccccccc--ceeeeeecccc-cccccccccceeccccc----
Confidence 999987773311 11223456788888864 46666555443 34444433322111000
Q ss_pred cCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccc-hhhHhhhhcccCCcccCCCceE
Q 037120 374 LSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIE-SLSERTKLKKENRFVPLSEGVT 452 (489)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~V~ 452 (489)
.......+.+.++.++++|+ |+.|+|||+.++ +.+. .+. +|.+.|+
T Consensus 282 ----------~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg----------~~~~~~~~------------~~~~~V~ 328 (355)
T d1nexb2 282 ----------TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG----------KLVHANIL------------KDADQIW 328 (355)
T ss_dssp ----------TTCCCCCEEEECSSEEEEEE-TTEEEEEETTTC----------CBCCSCTT------------TTCSEEE
T ss_pred ----------CCceEEEEEcCCCCEEEEEe-CCEEEEEECCCC----------CEEEEEec------------CCCCCEE
Confidence 11122334444566777764 899999999998 6664 344 8999999
Q ss_pred EEEeeCCCCeEEeccCcceeEEEe
Q 037120 453 ACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 453 ~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
+++|+|+ ..+++++.||.++||-
T Consensus 329 ~v~~~~~-~~~~~~s~dg~~~l~~ 351 (355)
T d1nexb2 329 SVNFKGK-TLVAAVEKDGQSFLEI 351 (355)
T ss_dssp EEEEETT-EEEEEEESSSCEEEEE
T ss_pred EEEEcCC-eEEEEEECCCcEEEEE
Confidence 9999986 5788999999987764
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.1e-28 Score=227.32 Aligned_cols=293 Identities=12% Similarity=0.081 Sum_probs=187.9
Q ss_pred ceeEEEECCCCcEEEEEecCC-eEEEEeCCCcccccCCCCCCCCCcccccccccCC-CCCCceeEEEeeCCC-CCEEEEE
Q 037120 98 GISALDFDCKGIYLVSATRSG-CLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHI-PLPQQLDAVRWNLAN-QDEVACA 174 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg-~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~-~~~~~V~~v~~~~~~-~~~l~s~ 174 (489)
.+.+++|+|+|+.||.++.+. .|+.|+.... .......+.+|. .. |++++|+|+. ..+|++|
T Consensus 19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~------------~~~~~~~~~gh~~~~---v~~v~fsP~~~g~~lasg 83 (325)
T d1pgua1 19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDS------------KVPPVVQFTGHGSSV---VTTVKFSPIKGSQYLCSG 83 (325)
T ss_dssp CCCCCEEETTTTEEEEEETTEEEEEECCSSCC------------SSCSEEEECTTTTSC---EEEEEECSSTTCCEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCC------------CccceEEEeCCCCCC---EEEEEEeeCCCCCEEEEE
Confidence 478999999999999987654 3455554331 112222334553 34 9999999853 3478888
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe--CCCcEEEEECCCCCcCceeec
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD--THGVVNIWDRRVGVLPSLELS 252 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~ 252 (489)
+.| |+|+|||+................ +..|..+|.+++|++++. ++++++ .++.+++|+..+++ ++..+
T Consensus 84 s~D-g~i~iWd~~~~~~~~~~~~~~~~~----~~~~~~~v~~v~~s~~~~-~l~~~~~~~~~~~~~~~~~~~~--~~~~~ 155 (325)
T d1pgua1 84 DES-GKVIVWGWTFDKESNSVEVNVKSE----FQVLAGPISDISWDFEGR-RLCVVGEGRDNFGVFISWDSGN--SLGEV 155 (325)
T ss_dssp ETT-SEEEEEEEEEEGGGTEEEEEEEEE----EECCSSCEEEEEECTTSS-EEEEEECCSSCSEEEEETTTCC--EEEEC
T ss_pred eCC-CCEEEeeecCCcceeeeecccccc----cccccCcEEEEEECCCCC-ccceeeccccceEEEEeecccc--cceee
Confidence 888 999999996543222111111122 266888999999999999 776665 47789999999876 67777
Q ss_pred cCCCCceeEEEEeecCCE-EEEEeCCCeEEEEEcCCCcccceee---cCCccCCCCeeEEEeCCCC-cceeeccccceee
Q 037120 253 TGSHGTLNSIQLHAENQI-IFAAGKHGSIYLWDLRGGRTSAPFH---NHKEVCHLPLTSLKLASML-EKIGTLKAQSKIV 327 (489)
Q Consensus 253 ~~h~~~v~~~~~~p~~~~-l~~~~~dg~i~lwd~~~~~~~~~~~---~~~~~~~~~v~~l~~~~~~-~~i~~~~~~~~~~ 327 (489)
.+|...|++++|+|++++ +++++.|+.|++||++.++....+. .|... |++++|+|++ ..++
T Consensus 156 ~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~----v~~v~~~pd~~~~l~--------- 222 (325)
T d1pgua1 156 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSF----VRDVEFSPDSGEFVI--------- 222 (325)
T ss_dssp CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCC----EEEEEECSTTCCEEE---------
T ss_pred eecccccccccccccccceEEEeecccccccccccccccceecccccCCCCc----cEEeeeccccceecc---------
Confidence 899999999999999886 5677889999999998876644433 33333 6677666653 2222
Q ss_pred ccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeec--CCcEEEEeecCC
Q 037120 328 SQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLS--TNSIYAVGSSSD 405 (489)
Q Consensus 328 ~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~sgs~d 405 (489)
+++.|+. ..+++...+........ . ...+....|.. ..+.++++|+.|
T Consensus 223 -----------------s~~~d~~-i~iwd~~~~~~~~~l~~------~------~~~v~~~~~s~~~~dg~~l~s~s~D 272 (325)
T d1pgua1 223 -----------------TVGSDRK-ISCFDGKSGEFLKYIED------D------QEPVQGGIFALSWLDSQKFATVGAD 272 (325)
T ss_dssp -----------------EEETTCC-EEEEETTTCCEEEECCB------T------TBCCCSCEEEEEESSSSEEEEEETT
T ss_pred -----------------ccccccc-eeeeeeccccccccccc------c------ccccccceeeeeccCCCEEEEEeCC
Confidence 2222221 22333332222211110 0 00111122321 225678899999
Q ss_pred CcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCC-CCeEEeccCcceeEEEe
Q 037120 406 HGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPL-NNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 406 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~-~~~i~sgs~dg~i~v~~ 476 (489)
+.|+|||+.++ +.+..+... .|...+..+++.+. +..|++||.||.|+||.
T Consensus 273 ~~i~iwd~~~~----------~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwd 324 (325)
T d1pgua1 273 ATIRVWDVTTS----------KCVQKWTLD----------KQQLGNQQVGVVATGNGRIISLSLDGTLNFYE 324 (325)
T ss_dssp SEEEEEETTTT----------EEEEEEECC----------TTCGGGCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred CeEEEEECCCC----------CEEEEEEec----------CCcccCeEEEEEECCCCEEEEEECCCEEEEEE
Confidence 99999999988 666655411 23333444444443 34789999999999995
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=3.1e-29 Score=239.57 Aligned_cols=252 Identities=11% Similarity=0.094 Sum_probs=173.3
Q ss_pred ceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcE
Q 037120 157 QLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVV 236 (489)
Q Consensus 157 ~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i 236 (489)
+|+|++|+|++. +|++++.| |.|+|||+... .+. ....+.+|...|++++|+|+++ +|++++.|++|
T Consensus 9 pIt~~~~s~dg~-~la~~~~~-~~i~iw~~~~~------~~~----~~~~l~gH~~~V~~l~fsp~~~-~l~s~s~D~~i 75 (371)
T d1k8kc_ 9 PISCHAWNKDRT-QIAICPNN-HEVHIYEKSGN------KWV----QVHELKEHNGQVTGVDWAPDSN-RIVTCGTDRNA 75 (371)
T ss_dssp CCCEEEECTTSS-EEEEECSS-SEEEEEEEETT------EEE----EEEEEECCSSCEEEEEEETTTT-EEEEEETTSCE
T ss_pred CeEEEEECCCCC-EEEEEeCC-CEEEEEECCCC------CEE----EEEEecCCCCCEEEEEECCCCC-EEEEEECCCeE
Confidence 399999999986 77788877 99999999432 111 2233478999999999999998 99999999999
Q ss_pred EEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccce----eecCCccCCCCeeEEEeCC
Q 037120 237 NIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAP----FHNHKEVCHLPLTSLKLAS 312 (489)
Q Consensus 237 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~----~~~~~~~~~~~v~~l~~~~ 312 (489)
++||+.++.......+.+|...|.+++|+|+++.+++++.|++|++|++........ ...|... |.+++|+|
T Consensus 76 ~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~----v~~v~~~p 151 (371)
T d1k8kc_ 76 YVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRST----VLSLDWHP 151 (371)
T ss_dssp EEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSC----EEEEEECT
T ss_pred EEEeecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccc----cccccccc
Confidence 999998765333444568889999999999999999999999999999887654222 2344444 77777777
Q ss_pred CCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCC-------ccccccC
Q 037120 313 MLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSN-------NSADQLH 385 (489)
Q Consensus 313 ~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 385 (489)
++.++++ ++.|+. ..+++........... ...+..... .......
T Consensus 152 ~~~~l~s--------------------------~s~D~~-v~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 203 (371)
T d1k8kc_ 152 NSVLLAA--------------------------GSCDFK-CRIFSAYIKEVEERPA-PTPWGSKMPFGELMFESSSSCGW 203 (371)
T ss_dssp TSSEEEE--------------------------EETTSC-EEEEECCCTTTSCCCC-CBTTBSCCCTTCEEEECCCCSSC
T ss_pred cccceec--------------------------cccCcE-EEEEeeccCccccccc-cccccccccceeeeeeccCccCc
Confidence 7766643 222211 1122211111000000 000000000 0001112
Q ss_pred CCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEe
Q 037120 386 LRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVA 465 (489)
Q Consensus 386 ~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~s 465 (489)
+..++|+|++. ++++++.|+.|++||+..+ +.+..+. +|..+|++++|+|++.+|++
T Consensus 204 v~~~~~s~~g~-~l~s~~~d~~i~iwd~~~~----------~~~~~~~------------~~~~~v~s~~fs~d~~~la~ 260 (371)
T d1k8kc_ 204 VHGVCFSANGS-RVAWVSHDSTVCLADADKK----------MAVATLA------------SETLPLLAVTFITESSLVAA 260 (371)
T ss_dssp EEEEEECSSSS-EEEEEETTTEEEEEEGGGT----------TEEEEEE------------CSSCCEEEEEEEETTEEEEE
T ss_pred EEEEEeecccc-cccccccCCcceEEeeecc----------cceeeee------------cccccceeeeecCCCCEEEE
Confidence 23467777754 6778889999999999988 7777777 89999999999999988877
Q ss_pred ccCcceeEEEec
Q 037120 466 GTKNSSLLVVSQ 477 (489)
Q Consensus 466 gs~dg~i~v~~~ 477 (489)
|. |+.+.+|.-
T Consensus 261 g~-d~~~~~~~~ 271 (371)
T d1k8kc_ 261 GH-DCFPVLFTY 271 (371)
T ss_dssp ET-TSSCEEEEE
T ss_pred Ec-CCceEEEEe
Confidence 65 677666543
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.1e-27 Score=220.48 Aligned_cols=297 Identities=15% Similarity=0.133 Sum_probs=189.0
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+.+|...|.+ +++++|++||+|+.||+|+|||+.+.+... .+.+|... |.+++|+|+ +|
T Consensus 12 l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~--------------~~~~h~~~---V~~v~~~~~---~l 70 (342)
T d2ovrb2 12 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR--------------TLVGHTGG---VWSSQMRDN---II 70 (342)
T ss_dssp EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE--------------ECCCCSSC---EEEEEEETT---EE
T ss_pred ECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEE--------------EEeCCCCC---EEEEEeCCC---cc
Confidence 4557777754 356679999999999999999998855443 22456665 999999975 88
Q ss_pred EEEecCCCEEEEEEeccCCCCCc------ee--eee-ce-------------------eeeeecCCcccCeeEEEEecCC
Q 037120 172 ACASTRSNVVSIYDIGYISDEPV------EV--LKT-RR-------------------SVTVVGSDVQKGLSDLAFSAVN 223 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~------~~--~~~-~~-------------------~~~~~~~~h~~~v~~~~~~~~~ 223 (489)
++++.| +++++|+......... .. ... .. .....+..+ ......+.+..
T Consensus 71 ~s~s~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 147 (342)
T d2ovrb2 71 ISGSTD-RTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGH--VAAVRCVQYDG 147 (342)
T ss_dssp EEEETT-SCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECC--SSCEEEEEECS
T ss_pred ccceec-ccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecc--cccceeecccc
Confidence 889888 9999999853211000 00 000 00 000000001 11122233445
Q ss_pred CcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCC
Q 037120 224 TSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHL 303 (489)
Q Consensus 224 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~ 303 (489)
. .+++++.|+.|++||.+..+ ++..+.+|...+.. +.+++.++++++.||.|++||++.++.+..+..|...
T Consensus 148 ~-~~~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~--~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~--- 219 (342)
T d2ovrb2 148 R-RVVSGAYDFMVKVWDPETET--CLHTLQGHTNRVYS--LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL--- 219 (342)
T ss_dssp S-CEEEEETTSCEEEEEGGGTE--EEEEECCCSSCEEE--EEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSC---
T ss_pred c-eeeeecCCCeEEEeecccce--eeEEEcCccccccc--ccCCCCEEEEEeCCCeEEEeecccceeeeEecccccc---
Confidence 5 78889999999999998765 55566677665554 5567889999999999999999999988888888766
Q ss_pred CeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccc
Q 037120 304 PLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQ 383 (489)
Q Consensus 304 ~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (489)
+.++.++++ ++ ++++.++. ..+++............... .
T Consensus 220 -v~~~~~~~~--~l--------------------------~s~s~d~~-i~iwd~~~~~~~~~~~~~~~---~------- 259 (342)
T d2ovrb2 220 -TSGMELKDN--IL--------------------------VSGNADST-VKIWDIKTGQCLQTLQGPNK---H------- 259 (342)
T ss_dssp -EEEEEEETT--EE--------------------------EEEETTSC-EEEEETTTCCEEEEECSTTS---C-------
T ss_pred -eeEEecCCC--EE--------------------------EEEcCCCE-EEEEecccccccccccccce---e-------
Confidence 777765542 22 22222221 11222222111111100000 0
Q ss_pred cCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeE
Q 037120 384 LHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTI 463 (489)
Q Consensus 384 ~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i 463 (489)
..........+.++++|+.||+|+|||+.++ +.+..+... ...+|.+.|++++|+|++.++
T Consensus 260 --~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg----------~~i~~~~~~-------~~~~~~~~v~~v~~s~~~~~l 320 (342)
T d2ovrb2 260 --QSAVTCLQFNKNFVITSSDDGTVKLWDLKTG----------EFIRNLVTL-------ESGGSGGVVWRIRASNTKLVC 320 (342)
T ss_dssp --SSCEEEEEECSSEEEEEETTSEEEEEETTTC----------CEEEEEEEC-------TTGGGTCEEEEEEECSSEEEE
T ss_pred --eeceeecccCCCeeEEEcCCCEEEEEECCCC----------CEEEEEecc-------cCCCCCCCEEEEEECCCCCEE
Confidence 0001111112568889999999999999988 666554200 011688999999999999999
Q ss_pred EeccCcce----eEEEeccc
Q 037120 464 VAGTKNSS----LLVVSQKQ 479 (489)
Q Consensus 464 ~sgs~dg~----i~v~~~~~ 479 (489)
|+|+.||+ |.+|....
T Consensus 321 a~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 321 AVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp EEECSSSSSCCEEEEEECCC
T ss_pred EEEeCCCCCeeEEEEEeCCC
Confidence 99999996 88887653
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=3.3e-27 Score=222.29 Aligned_cols=248 Identities=14% Similarity=0.136 Sum_probs=180.9
Q ss_pred cCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEE
Q 037120 150 LHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIA 229 (489)
Q Consensus 150 ~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 229 (489)
.|... |++++|+|+++ +|++|+ | |.|+|||+...... ..+. .....+|...|.+++|+|+++ +|++
T Consensus 49 ~H~~~---V~~v~fs~~g~-~latg~-d-g~V~iWd~~~~~~~--~~~~-----~~~~~~h~~~I~~v~~s~dg~-~l~s 114 (337)
T d1gxra_ 49 NHGEV---VCAVTISNPTR-HVYTGG-K-GCVKVWDISHPGNK--SPVS-----QLDCLNRDNYIRSCKLLPDGC-TLIV 114 (337)
T ss_dssp CCSSC---CCEEEECSSSS-EEEEEC-B-SEEEEEETTSTTCC--SCSE-----EEECSCTTSBEEEEEECTTSS-EEEE
T ss_pred CCCCc---EEEEEECCCCC-EEEEEE-C-CEEEEEEccCCccc--ceeE-----EeeecCCCCcEEEEEEcCCCC-EEEE
Confidence 46655 99999999986 788887 5 89999999654322 1111 112367999999999999998 9999
Q ss_pred EeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEE
Q 037120 230 SDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLK 309 (489)
Q Consensus 230 ~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~ 309 (489)
++.||.|++||+..........+..|...+.+++|+|++.++++++.|+.|++||+++++.......|... |++++
T Consensus 115 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~----v~~l~ 190 (337)
T d1gxra_ 115 GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG----ASCID 190 (337)
T ss_dssp EESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEE
T ss_pred eeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccc
Confidence 99999999999987554455566689999999999999999999999999999999999888888888766 88888
Q ss_pred eCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcc
Q 037120 310 LASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKP 389 (489)
Q Consensus 310 ~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (489)
|++++..+....... .+ .+++...+.....+.. . ..+..+
T Consensus 191 ~s~~~~~~~~~~~d~-----------------~v----------~i~d~~~~~~~~~~~~------~-------~~i~~l 230 (337)
T d1gxra_ 191 ISNDGTKLWTGGLDN-----------------TV----------RSWDLREGRQLQQHDF------T-------SQIFSL 230 (337)
T ss_dssp ECTTSSEEEEEETTS-----------------EE----------EEEETTTTEEEEEEEC------S-------SCEEEE
T ss_pred ccccccccccccccc-----------------cc----------cccccccceeeccccc------c-------cceEEE
Confidence 888877664321110 01 1111111111111000 0 001123
Q ss_pred eeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCc
Q 037120 390 SWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKN 469 (489)
Q Consensus 390 ~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~d 469 (489)
+|.|+ +.++++|+.|+.|++||+... +.. ... .|.+.|++++|+|++++|++|+.|
T Consensus 231 ~~~~~-~~~l~~~~~d~~i~i~d~~~~----------~~~-~~~------------~~~~~i~~v~~s~~g~~l~s~s~D 286 (337)
T d1gxra_ 231 GYCPT-GEWLAVGMESSNVEVLHVNKP----------DKY-QLH------------LHESCVLSLKFAYCGKWFVSTGKD 286 (337)
T ss_dssp EECTT-SSEEEEEETTSCEEEEETTSS----------CEE-EEC------------CCSSCEEEEEECTTSSEEEEEETT
T ss_pred EEccc-ccccceecccccccccccccc----------ccc-ccc------------ccccccceEEECCCCCEEEEEeCC
Confidence 44444 556778899999999999877 443 223 799999999999999999999999
Q ss_pred ceeEEEeccc
Q 037120 470 SSLLVVSQKQ 479 (489)
Q Consensus 470 g~i~v~~~~~ 479 (489)
|.|.||..+.
T Consensus 287 g~i~iwd~~~ 296 (337)
T d1gxra_ 287 NLLNAWRTPY 296 (337)
T ss_dssp SEEEEEETTT
T ss_pred CeEEEEECCC
Confidence 9999996543
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=3e-28 Score=223.80 Aligned_cols=254 Identities=15% Similarity=0.139 Sum_probs=178.6
Q ss_pred ccccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 91 RRSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 91 ~~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
.+..|...|++++|+| |++|+.||+|++||+.+. . .+|... |.+++|+++. .
T Consensus 8 ~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-------------~------~~h~~~---V~~~~~~~~~--~ 59 (287)
T d1pgua2 8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-------------H------QDHSNL---IVSLDNSKAQ--E 59 (287)
T ss_dssp EECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-------------E------CCCCSC---EEEEECCSTT--C
T ss_pred EECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-------------C------CCCCCC---EEEEEecCCC--e
Confidence 3667888999999998 999999999999998761 1 235444 9999998764 5
Q ss_pred EEEEecCCCEEEEEEeccCCC--CCcee---------eee--ce---------eeeeecCCcccCeeEEEEecCCCcEEE
Q 037120 171 VACASTRSNVVSIYDIGYISD--EPVEV---------LKT--RR---------SVTVVGSDVQKGLSDLAFSAVNTSRLI 228 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~--~~~~~---------~~~--~~---------~~~~~~~~h~~~v~~~~~~~~~~~~l~ 228 (489)
+++++.| ++|++|++..... .+... +.. .. .....+. +. ....++++++. .++
T Consensus 60 ~~s~s~D-~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~-~~~ 134 (287)
T d1pgua2 60 YSSISWD-DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LN--SPGSAVSLSQN-YVA 134 (287)
T ss_dssp CEEEETT-TEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CS--SCEEEEEECSS-EEE
T ss_pred EEEEeec-cccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeecc-cc--ceeeeeeccCc-cee
Confidence 6778888 9999998853211 11000 000 00 0000001 11 22345677777 666
Q ss_pred EEeCC-CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCccc-ceeecCCccCCCCee
Q 037120 229 ASDTH-GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTS-APFHNHKEVCHLPLT 306 (489)
Q Consensus 229 s~s~d-g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~-~~~~~~~~~~~~~v~ 306 (489)
.++.| +.|++|++...+. .......|...+++++|+|++.+|++|+.||.|++||+.+++.. ..+..|... |.
T Consensus 135 v~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~----v~ 209 (287)
T d1pgua2 135 VGLEEGNTIQVFKLSDLEV-SFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSK----IN 209 (287)
T ss_dssp EEETTTSCEEEEETTEEEE-EEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSC----EE
T ss_pred eeccccceeeeeeccccce-eeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccc----cc
Confidence 66655 5799999876432 22233467889999999999999999999999999999988763 345566655 77
Q ss_pred EEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCC
Q 037120 307 SLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHL 386 (489)
Q Consensus 307 ~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (489)
+++|+|.+.... .+..+
T Consensus 210 ~~~~~p~~~~~~-----------------------------------------------------~~~~~---------- 226 (287)
T d1pgua2 210 AISWKPAEKGAN-----------------------------------------------------EEEIE---------- 226 (287)
T ss_dssp EEEECCCC-----------------------------------------------------------CCS----------
T ss_pred eeeecccccccc-----------------------------------------------------cccCC----------
Confidence 777776543221 11112
Q ss_pred CcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEec
Q 037120 387 RKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAG 466 (489)
Q Consensus 387 ~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sg 466 (489)
+.++++|+.|++|+|||+.... +.+..+. +|.+.|++++|+|++ .|+|+
T Consensus 227 ---------~~~l~sgs~D~~i~iw~~~~~~---------~~~~~~~------------~h~~~V~~v~~~~~~-~l~s~ 275 (287)
T d1pgua2 227 ---------EDLVATGSLDTNIFIYSVKRPM---------KIIKALN------------AHKDGVNNLLWETPS-TLVSS 275 (287)
T ss_dssp ---------CCEEEEEETTSCEEEEESSCTT---------CCEEETT------------SSTTCEEEEEEEETT-EEEEE
T ss_pred ---------CCeeEeecCCCeEEEEECCCCC---------eEEEEeC------------CCCCCeEEEEECCCC-EEEEE
Confidence 6688999999999999997640 4455556 899999999999976 58999
Q ss_pred cCcceeEEEe
Q 037120 467 TKNSSLLVVS 476 (489)
Q Consensus 467 s~dg~i~v~~ 476 (489)
|.||.|++|.
T Consensus 276 g~D~~v~iW~ 285 (287)
T d1pgua2 276 GADACIKRWN 285 (287)
T ss_dssp ETTSCEEEEE
T ss_pred ECCCeEEEEE
Confidence 9999999996
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=2.1e-27 Score=222.47 Aligned_cols=262 Identities=12% Similarity=0.093 Sum_probs=176.0
Q ss_pred ccCC-CceeEEEECC--CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCC
Q 037120 93 SFGK-PGISALDFDC--KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQD 169 (489)
Q Consensus 93 ~~~~-~~V~~~~fs~--~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~ 169 (489)
..|. ..|++++|+| +|.+||+|+.||+|+|||+......... .......+..|... |.+++|++++..
T Consensus 59 ~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~------~~~~~~~~~~~~~~---v~~v~~s~~~~~ 129 (325)
T d1pgua1 59 TGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSV------EVNVKSEFQVLAGP---ISDISWDFEGRR 129 (325)
T ss_dssp CTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEE------EEEEEEEEECCSSC---EEEEEECTTSSE
T ss_pred eCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeee------ecccccccccccCc---EEEEEECCCCCc
Confidence 3343 4599999998 5789999999999999999775443310 01111122345555 999999999986
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-c
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-S 248 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~ 248 (489)
+++++...++.+++|+...+ . ....+.+|...|++++|+|+++.++++++.|+.|++||.+..+.. .
T Consensus 130 l~~~~~~~~~~~~~~~~~~~-----~-------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~ 197 (325)
T d1pgua1 130 LCVVGEGRDNFGVFISWDSG-----N-------SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS 197 (325)
T ss_dssp EEEEECCSSCSEEEEETTTC-----C-------EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE
T ss_pred cceeeccccceEEEEeeccc-----c-------cceeeeecccccccccccccccceEEEeeccccccccccccccccee
Confidence 65555433478999998322 1 222347899999999999999867889999999999999876532 2
Q ss_pred eeeccCCCCceeEEEEeec-CCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceee
Q 037120 249 LELSTGSHGTLNSIQLHAE-NQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIV 327 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~-~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~ 327 (489)
......|...|.+++|+|+ +.++++++.||.|++||+++++.+..+.+|... +.++.|+
T Consensus 198 ~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~----v~~~~~s---------------- 257 (325)
T d1pgua1 198 DRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEP----VQGGIFA---------------- 257 (325)
T ss_dssp ECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBC----CCSCEEE----------------
T ss_pred cccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccc----cccceee----------------
Confidence 3334477889999999996 678888999999999999999998888888765 4433332
Q ss_pred ccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCc
Q 037120 328 SQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHG 407 (489)
Q Consensus 328 ~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~ 407 (489)
+.+ |++.++++++.|+. .+++++..+.....+.....- ......++.+.++.++++||.|+.
T Consensus 258 ------~~~-~dg~~l~s~s~D~~-i~iwd~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~l~s~s~dg~ 319 (325)
T d1pgua1 258 ------LSW-LDSQKFATVGADAT-IRVWDVTTSKCVQKWTLDKQQ----------LGNQQVGVVATGNGRIISLSLDGT 319 (325)
T ss_dssp ------EEE-SSSSEEEEEETTSE-EEEEETTTTEEEEEEECCTTC----------GGGCEEEEEEEETTEEEEEETTSC
T ss_pred ------eec-cCCCEEEEEeCCCe-EEEEECCCCCEEEEEEecCCc----------ccCeEEEEEECCCCEEEEEECCCE
Confidence 222 34555555554433 234444443332221110000 001122344444557889999999
Q ss_pred EEEEec
Q 037120 408 IHLLDF 413 (489)
Q Consensus 408 i~vwd~ 413 (489)
|+|||+
T Consensus 320 i~vwdl 325 (325)
T d1pgua1 320 LNFYEL 325 (325)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 999996
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=5.1e-27 Score=217.21 Aligned_cols=266 Identities=14% Similarity=0.204 Sum_probs=190.4
Q ss_pred ccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcE
Q 037120 147 KHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSR 226 (489)
Q Consensus 147 ~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 226 (489)
.+.+|... |++|+|+|+++ +|++|+.| |+|+|||+.... . . .++.+|...|.+++|+|++. .
T Consensus 12 ~L~GH~~~---I~~l~~sp~~~-~l~s~s~D-g~i~iWd~~~~~-----~---~----~~~~~h~~~V~~~~~~~~~~-~ 73 (317)
T d1vyhc1 12 ALSGHRSP---VTRVIFHPVFS-VMVSASED-ATIKVWDYETGD-----F---E----RTLKGHTDSVQDISFDHSGK-L 73 (317)
T ss_dssp EEECCSSC---EEEEEECSSSS-EEEEEESS-SCEEEEETTTCC-----C---C----EEECCCSSCEEEEEECTTSS-E
T ss_pred EEcCCCCC---eEEEEEcCCCC-EEEEEeCC-CeEEEEECCCCC-----E---E----EEEeCCCCcEEEEeeecccc-c
Confidence 45778887 99999999985 88899988 999999994321 1 1 22378999999999999999 9
Q ss_pred EEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCee
Q 037120 227 LIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLT 306 (489)
Q Consensus 227 l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 306 (489)
+++++.++.+.+|+....+ .......|...+.++.|+|+++.+++++.|+.+++||+++++.+..+..|... +.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~ 147 (317)
T d1vyhc1 74 LASCSADMTIKLWDFQGFE--CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW----VR 147 (317)
T ss_dssp EEEEETTSCCCEEETTSSC--EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC----EE
T ss_pred ccccccccccccccccccc--cccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCc----ce
Confidence 9999999999999998766 45556688999999999999999999999999999999999999999988877 99
Q ss_pred EEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCc-cccccC
Q 037120 307 SLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNN-SADQLH 385 (489)
Q Consensus 307 ~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 385 (489)
+++|++++..+++......+ .-... ..+..+... .++...+.+. .+.+.... ......
T Consensus 148 ~~~~~~~~~~l~~~~~d~~v-----~~~~~-~~~~~~~~~-------------~~~~~~i~~~--~~~~~~~~~~~~~~~ 206 (317)
T d1vyhc1 148 MVRPNQDGTLIASCSNDQTV-----RVWVV-ATKECKAEL-------------REHRHVVECI--SWAPESSYSSISEAT 206 (317)
T ss_dssp EEEECTTSSEEEEEETTSCE-----EEEET-TTCCEEEEE-------------CCCSSCEEEE--EECCSCGGGGGGGCC
T ss_pred eeecccCCCEEEEEeCCCeE-----EEEee-ccceeeEEE-------------ecCCCCceEE--EEeeccccceeeccc
Confidence 99999999887653211111 11111 111111110 0000000000 00000000 000000
Q ss_pred CCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEe
Q 037120 386 LRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVA 465 (489)
Q Consensus 386 ~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~s 465 (489)
..........+.++++|+.|+.|++||+.++ +.+..+. +|...|.+++|+|++.+|++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~----------~~~~~~~------------~~~~~v~~~~~~~~~~~l~s 264 (317)
T d1vyhc1 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTG----------MCLMTLV------------GHDNWVRGVLFHSGGKFILS 264 (317)
T ss_dssp SCC-------CCEEEEEETTSEEEEEETTTT----------EEEEEEE------------CCSSCEEEEEECSSSSCEEE
T ss_pred cceeeeeccCCceeEeccCCCEEEEEECCCC----------cEEEEEe------------CCCCCEEEEEECCCCCEEEE
Confidence 0011111223678889999999999999998 7777777 89999999999999999999
Q ss_pred ccCcceeEEEeccc
Q 037120 466 GTKNSSLLVVSQKQ 479 (489)
Q Consensus 466 gs~dg~i~v~~~~~ 479 (489)
|+.||.|.||..+.
T Consensus 265 ~~~dg~i~iwd~~~ 278 (317)
T d1vyhc1 265 CADDKTLRVWDYKN 278 (317)
T ss_dssp EETTTEEEEECCTT
T ss_pred EECCCeEEEEECCC
Confidence 99999999997654
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=5.8e-27 Score=219.07 Aligned_cols=307 Identities=10% Similarity=0.025 Sum_probs=190.0
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
..+|+.+|++|+|+|+|++||+|+.||+|+|||++...... ......+|... |.+++|+|++..+|
T Consensus 7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~-----------~~~~~~~h~~~---V~~v~f~~~~~~~l 72 (342)
T d1yfqa_ 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNV-----------DLLQSLRYKHP---LLCCNFIDNTDLQI 72 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEE-----------EEEEEEECSSC---EEEEEEEESSSEEE
T ss_pred CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcce-----------EEEEecCCCCC---EEEEEEeCCCCCEE
Confidence 45677889999999999999999999999999997632211 00111346666 99999999877789
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCc--e
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPS--L 249 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~ 249 (489)
++|+.| |+|++|++...... .... ..+........+.++.. .+++++.|+.+++||++...... .
T Consensus 73 ~sg~~d-~~v~~w~~~~~~~~-----~~~~------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~wd~~~~~~~~~~~ 139 (342)
T d1yfqa_ 73 YVGTVQ-GEILKVDLIGSPSF-----QALT------NNEANLGICRICKYGDD-KLIAASWDGLIEVIDPRNYGDGVIAV 139 (342)
T ss_dssp EEEETT-SCEEEECSSSSSSE-----EECB------SCCCCSCEEEEEEETTT-EEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred EEcccc-cceeeeeccccccc-----cccc------ccccccccccccccccc-cccccccccccceeeccccccceeee
Confidence 999988 99999999433211 1111 22333444455566666 99999999999999997654321 1
Q ss_pred eeccC--CCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCC-cceeecccccee
Q 037120 250 ELSTG--SHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASML-EKIGTLKAQSKI 326 (489)
Q Consensus 250 ~~~~~--h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~-~~i~~~~~~~~~ 326 (489)
..... .......+.+.+.+..+++++.|+.|++||++..+........... ...+.+..+.+.. ..+...
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~------ 212 (342)
T d1yfqa_ 140 KNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL-KYQIRDVALLPKEQEGYACS------ 212 (342)
T ss_dssp EESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSC-SSCEEEEEECSGGGCEEEEE------
T ss_pred cccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeeccc-ccceeeeEeecCCCCEEEee------
Confidence 11112 2334557788899999999999999999999987663333211111 0114444444332 222210
Q ss_pred eccceeEEEeCCCCCeEEEEEecCC---c----eEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEE
Q 037120 327 VSQEIHSIDLDPSCSYQLAFHLDDG---W----SGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYA 399 (489)
Q Consensus 327 ~~~~i~~~~~~p~~~~~~~~~~~~~---w----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 399 (489)
+.++. +.....+.. + ......... ..........+..++|+|++ .++
T Consensus 213 ----------s~dg~-~~v~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~v~~l~~sp~~-~~l 266 (342)
T d1yfqa_ 213 ----------SIDGR-VAVEFFDDQGDDYNSSKRFAFRCHRL--------------NLKDTNLAYPVNSIEFSPRH-KFL 266 (342)
T ss_dssp ----------ETTSE-EEEEECCTTCCSTTCTTCEEEECCCC--------------CTTCCSSCCCEEEEEECTTT-CCE
T ss_pred ----------cCCCe-EEEEEecCCcceeeccccceeeeeee--------------ccCCCcccccceeEEecCCc-cEE
Confidence 11111 111111111 0 000000000 00000011223346777775 468
Q ss_pred EeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 400 VGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 400 ~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
++|+.||.|+|||+.++ +.+..+. +...+..++|+|+++.+++++.|+.+.+|..-.
T Consensus 267 asg~~Dg~v~vWD~~~~----------~~l~~~~-------------~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~ 323 (342)
T d1yfqa_ 267 YTAGSDGIISCWNLQTR----------KKIKNFA-------------KFNEDSVVKIACSDNILCLATSDDTFKTNAAID 323 (342)
T ss_dssp EEEETTSCEEEEETTTT----------EEEEECC-------------CCSSSEEEEEEECSSEEEEEEECTHHHHCSSSC
T ss_pred EEECCCCEEEEEECCCC----------cEEEEec-------------CCCCCEEEEEEeCCCEEEEEEcCCcEEEeeeeC
Confidence 88999999999999988 6666554 234556678889999999999999888876544
Q ss_pred cc
Q 037120 480 QC 481 (489)
Q Consensus 480 ~~ 481 (489)
+.
T Consensus 324 ~~ 325 (342)
T d1yfqa_ 324 QT 325 (342)
T ss_dssp TT
T ss_pred CC
Confidence 43
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=3.2e-26 Score=219.36 Aligned_cols=300 Identities=14% Similarity=0.135 Sum_probs=184.3
Q ss_pred EEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCC
Q 037120 112 VSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISD 191 (489)
Q Consensus 112 a~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~ 191 (489)
+.+..++.+.+|+......... .......|... |+||+|+|+++ +|++|+ | ++|+|||+..+..
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~----------~l~~~~~H~~~---V~~l~fs~dg~-~lasg~-d-~~i~iW~~~~~~~ 95 (388)
T d1erja_ 32 LKKQTNDYYILYNPALPREIDV----------ELHKSLDHTSV---VCCVKFSNDGE-YLATGC-N-KTTQVYRVSDGSL 95 (388)
T ss_dssp SEEECSSCEEEECTTSCCCEEE----------EEEEEEECSSC---CCEEEECTTSS-EEEEEC-B-SCEEEEETTTCCE
T ss_pred cccCCCCcEEEeCCCCCcceee----------eeEeeCCCCCc---EEEEEECCCCC-EEEEEe-C-CeEEEEEecccce
Confidence 3456678888998765322211 11112357777 99999999986 788887 5 8999999954321
Q ss_pred CCceeeee--------ceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEE
Q 037120 192 EPVEVLKT--------RRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQ 263 (489)
Q Consensus 192 ~~~~~~~~--------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~ 263 (489)
. ..+.. .........+|...|++++|+|+++ +|++|+.||.|++||...++ .+....+|...|.+++
T Consensus 96 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~-~l~s~~~dg~v~i~~~~~~~--~~~~~~~h~~~v~~~~ 170 (388)
T d1erja_ 96 V--ARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK-FLATGAEDRLIRIWDIENRK--IVMILQGHEQDIYSLD 170 (388)
T ss_dssp E--EEECC-----------------CCCCBEEEEEECTTSS-EEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEEE
T ss_pred E--eeecccccccccccccccccccCCCCCEEEEEECCCCC-cceecccccccccccccccc--cccccccccccccccc
Confidence 1 11110 0001112356888999999999999 99999999999999999876 5666778999999999
Q ss_pred EeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeE
Q 037120 264 LHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQ 343 (489)
Q Consensus 264 ~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~ 343 (489)
+++++..+++++.++.|++||+++.........+... +....+.+++..++
T Consensus 171 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~------------------------- 221 (388)
T d1erja_ 171 YFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV----TTVAVSPGDGKYIA------------------------- 221 (388)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE----EEEEECSTTCCEEE-------------------------
T ss_pred cccccccccccccceeeeeeecccccccccccccccc----ccccccCCCCCeEE-------------------------
Confidence 9999999999999999999999987766555544322 33332233444433
Q ss_pred EEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeee
Q 037120 344 LAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHV 423 (489)
Q Consensus 344 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~ 423 (489)
+++.++. ..+++...+.............. .....+..+.|+|+ +.++++|+.|+.|++||+...
T Consensus 222 -~~~~d~~-i~i~~~~~~~~~~~~~~~~~~~~-----~h~~~v~~l~~s~~-~~~l~s~~~d~~i~iwd~~~~------- 286 (388)
T d1erja_ 222 -AGSLDRA-VRVWDSETGFLVERLDSENESGT-----GHKDSVYSVVFTRD-GQSVVSGSLDRSVKLWNLQNA------- 286 (388)
T ss_dssp -EEETTSC-EEEEETTTCCEEEEEC------C-----CCSSCEEEEEECTT-SSEEEEEETTSEEEEEEC----------
T ss_pred -EEcCCCe-EEEeecccCccceeecccccccc-----CCCCCEEEEEECCC-CCEEEEEECCCcEEEEeccCC-------
Confidence 2222221 11222222111111000000000 00012234556665 457788899999999999876
Q ss_pred ccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 424 DYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
+................+..|...|++++|+|++++|++|+.||.|+||..+.
T Consensus 287 ---~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~ 339 (388)
T d1erja_ 287 ---NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 339 (388)
T ss_dssp ---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred ---ccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 22222111111111112247899999999999999999999999999997553
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=5.3e-27 Score=225.77 Aligned_cols=309 Identities=15% Similarity=0.144 Sum_probs=178.7
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCc---eeEEEeeCCCC
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQ---LDAVRWNLANQ 168 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~---V~~v~~~~~~~ 168 (489)
...|...|.++++++ ++|++|+.|++|+|||..+...... .........|...... +..+..+....
T Consensus 10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (393)
T d1sq9a_ 10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENP--------KDKSYSHFVHKSGLHHVDVLQAIERDAFEL 79 (393)
T ss_dssp SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCG--------GGGEEEEECCTTCEEEEEEEEEEETTTEEE
T ss_pred CCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcc--------cceeEeeeeccCCceEeeeEeeeccCCCCC
Confidence 456778899999875 6899999999999999766332110 0000011112222000 12222232233
Q ss_pred CEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCC----cEEEEEeCCCcEEEEECCCC
Q 037120 169 DEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT----SRLIASDTHGVVNIWDRRVG 244 (489)
Q Consensus 169 ~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----~~l~s~s~dg~i~iwd~~~~ 244 (489)
.++++++.| |.|++|++....... .+............+...+..++|.++.. .++++++.||.+++||+...
T Consensus 80 ~~~~s~~~d-g~v~~w~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~ 156 (393)
T d1sq9a_ 80 CLVATTSFS-GDLLFYRITREDETK--KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPF 156 (393)
T ss_dssp EEEEEEETT-SCEEEEEEEECTTTC--CEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESS
T ss_pred cEEEEEeCC-CcEEEEEccCCCcee--eeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecC
Confidence 467788888 999999986543321 11111111111234666788889987653 37899999999999998543
Q ss_pred CcC----------------ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceee------cCCccCC
Q 037120 245 VLP----------------SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFH------NHKEVCH 302 (489)
Q Consensus 245 ~~~----------------~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~------~~~~~~~ 302 (489)
... .......+...+++++|+|++ ++++|+.||+|+|||+.+++.+..++ +|...
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~-- 233 (393)
T d1sq9a_ 157 ADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS-- 233 (393)
T ss_dssp SSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCC--
T ss_pred CcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccce--
Confidence 110 011122455678999999998 78899999999999999988765544 34444
Q ss_pred CCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCc--eEEEEeeccceeeecCCCC-CCcCCCCc
Q 037120 303 LPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGW--SGVLDVYNSRVSHVHCPPP-AWLSDSNN 379 (489)
Q Consensus 303 ~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w--~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 379 (489)
|++++|+|+|..+++ ++.|+.. .+++++..+.......... ........
T Consensus 234 --V~~l~~spdg~~l~s--------------------------gs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~ 285 (393)
T d1sq9a_ 234 --IRSVKFSPQGSLLAI--------------------------AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGE 285 (393)
T ss_dssp --EEEEEECSSTTEEEE--------------------------EEEETTEEEEEEEETTTCCEEEEECBC--------CC
T ss_pred --EEEcccccccceeee--------------------------ecCCCCcceeeecccccceeeeeeccccccccceeee
Confidence 777776666665543 3332220 1222222222111110000 00000000
Q ss_pred cccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceE----EEE
Q 037120 380 SADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVT----ACV 455 (489)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~----~va 455 (489)
..+...+..++|+|+ +.+|++||.|++|+|||+.++ +.+..+. +|.+.|. .++
T Consensus 286 ~gH~~~V~~l~fspd-~~~l~S~s~D~~v~vWd~~~g----------~~~~~l~------------gH~~~v~~~~~~~~ 342 (393)
T d1sq9a_ 286 FAHSSWVMSLSFNDS-GETLCSAGWDGKLRFWDVKTK----------ERITTLN------------MHCDDIEIEEDILA 342 (393)
T ss_dssp BSBSSCEEEEEECSS-SSEEEEEETTSEEEEEETTTT----------EEEEEEE------------CCGGGCSSGGGCCC
T ss_pred ecccCceeeeccCCC-CCeeEEECCCCEEEEEECCCC----------CEEEEEC------------CcCCcccCCccEEE
Confidence 001112334566665 568899999999999999999 7777776 6655553 355
Q ss_pred eeCCCCeEEecc
Q 037120 456 THPLNNTIVAGT 467 (489)
Q Consensus 456 ~~p~~~~i~sgs 467 (489)
|+|++..+++++
T Consensus 343 ~~~~~~~~~~~~ 354 (393)
T d1sq9a_ 343 VDEHGDSLAEPG 354 (393)
T ss_dssp BCTTSCBCSSCC
T ss_pred ECCCCCEEEEcc
Confidence 666655555444
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.6e-25 Score=204.61 Aligned_cols=282 Identities=15% Similarity=0.170 Sum_probs=183.9
Q ss_pred cccCCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 92 RSFGKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 92 ~~~~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
+..+..+|+|++| +|++||+|+.||+|+|||+.+.++.. .+.+|... |++++|++ .+|
T Consensus 11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~--------------~l~~H~~~---V~~v~~~~---~~l 68 (293)
T d1p22a2 11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR--------------ILTGHTGS---VLCLQYDE---RVI 68 (293)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE--------------EECCCSSC---EEEEECCS---SEE
T ss_pred cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEE--------------EEecCCCC---Eeeeeccc---cee
Confidence 5566778999765 78999999999999999998855443 23556666 99999854 388
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcC-cee
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLP-SLE 250 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~ 250 (489)
++++.| +.|++|++.... ..... ..+ ......+.+... .++++..++.+.+||....... ...
T Consensus 69 ~s~s~D-~~i~~~~~~~~~-----~~~~~-------~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (293)
T d1p22a2 69 ITGSSD-STVRVWDVNTGE-----MLNTL-------IHH--CEAVLHLRFNNG-MMVTCSKDRSIAVWDMASPTDITLRR 132 (293)
T ss_dssp EEEETT-SCEEEEESSSCC-----EEEEE-------CCC--CSCEEEEECCTT-EEEEEETTSCEEEEECSSSSCCEEEE
T ss_pred eccccc-cccccccccccc-----ccccc-------ccc--cccccccccccc-ceeecccccceeEeeccccccccccc
Confidence 899988 999999994332 11111 111 222334455566 8899999999999999876543 333
Q ss_pred eccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccc
Q 037120 251 LSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQE 330 (489)
Q Consensus 251 ~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~ 330 (489)
....|...+.++.+. ...+++++.|+.|++||+++++.+..+.++... +..+.+++.
T Consensus 133 ~~~~~~~~v~~~~~~--~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~----v~~~~~~~~----------------- 189 (293)
T d1p22a2 133 VLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG----IACLQYRDR----------------- 189 (293)
T ss_dssp EECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTTCCEEEEEECCSSC----EEEEEEETT-----------------
T ss_pred cccccccccccceec--ccccccccCCCceeeecCCCCcEEEEEcccccc----cccccCCCC-----------------
Confidence 445778888776664 567889999999999999999988888877755 666655432
Q ss_pred eeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEE
Q 037120 331 IHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHL 410 (489)
Q Consensus 331 i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~v 410 (489)
++++...|+. ..+++............ .. .........+.++++|+.|+.|++
T Consensus 190 -----------~l~~~~~dg~-i~i~d~~~~~~~~~~~~------~~---------~~v~~~~~~~~~l~sg~~dg~i~i 242 (293)
T d1p22a2 190 -----------LVVSGSSDNT-IRLWDIECGACLRVLEG------HE---------ELVRCIRFDNKRIVSGAYDGKIKV 242 (293)
T ss_dssp -----------EEEEEETTSC-EEEEETTTCCEEEEECC------CS---------SCEEEEECCSSEEEEEETTSCEEE
T ss_pred -----------eEEEecCCCE-EEEEecccceeeeeecc------cc---------eeeeeccccceEEEEEcCCCEEEE
Confidence 2222222222 11222222211111100 00 001112223668889999999999
Q ss_pred EeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEe
Q 037120 411 LDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVS 476 (489)
Q Consensus 411 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~ 476 (489)
||+....... .......+..+. +|.+.|++++|+ +.+|+|||.||+|+||.
T Consensus 243 wd~~~~~~~~-~~~~~~~~~~~~------------~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 243 WDLVAALDPR-APAGTLCLRTLV------------EHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp EEHHHHTSTT-SCTTTTEEEEEC------------CCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred EECCCCcccc-ccCCceeeEEec------------CCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 9987541000 000011222333 899999999996 46899999999999994
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.95 E-value=7.4e-27 Score=221.10 Aligned_cols=313 Identities=11% Similarity=0.033 Sum_probs=194.7
Q ss_pred eEEEECC-CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 100 SALDFDC-KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 100 ~~~~fs~-~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
..-.||| ||+++|+++ +|.|+|||+....... .+|... |.+++|+|+++.+++++..++
T Consensus 6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~----------------~~~~~~---v~~~~~spDg~~l~~~~~~~g 65 (360)
T d1k32a3 6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK----------------VPEPLR---IRYVRRGGDTKVAFIHGTREG 65 (360)
T ss_dssp GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE----------------CSCCSC---EEEEEECSSSEEEEEEEETTE
T ss_pred hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEE----------------ccCCCC---EEEEEECCCCCEEEEEEcCCC
Confidence 3457999 999999987 5799999998744332 245444 999999999975555565442
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCc
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGT 258 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~ 258 (489)
..|++||+..+. ...+.+|...|.+++|+|+++ +|++++.++.+++||+.+++ +......|...
T Consensus 66 ~~v~v~d~~~~~-------------~~~~~~~~~~v~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 129 (360)
T d1k32a3 66 DFLGIYDYRTGK-------------AEKFEENLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLETGK--PTVIERSREAM 129 (360)
T ss_dssp EEEEEEETTTCC-------------EEECCCCCCSEEEEEECTTSS-EEEEEETTSEEEEEETTTCC--EEEEEECSSSC
T ss_pred CEEEEEECCCCc-------------EEEeeCCCceEEeeeeccccc-ccceeccccccccccccccc--eeeeeeccccc
Confidence 489999994321 112367889999999999999 99999999999999999877 55566688889
Q ss_pred eeEEEEeecCCEEEEEe----------CCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceee-
Q 037120 259 LNSIQLHAENQIIFAAG----------KHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIV- 327 (489)
Q Consensus 259 v~~~~~~p~~~~l~~~~----------~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~- 327 (489)
+.+++|+|+|++|+.++ .++.+++||+.+++..... .+... +..+.|+|+|+.++.........
T Consensus 130 ~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~-~~~~~----~~~~~~spdg~~l~~~s~~~~~~~ 204 (360)
T d1k32a3 130 ITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT-TENSH----DYAPAFDADSKNLYYLSYRSLDPS 204 (360)
T ss_dssp CCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS-CSSSB----EEEEEECTTSCEEEEEESCCCCCE
T ss_pred ccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeec-ccccc----cccccccCCCCEEEEEeCCCceEc
Confidence 99999999999988654 2557999999987653333 33444 88899999998886432111110
Q ss_pred ------------ccceeEEEeCCCCCeEEEEEecCCce--EEEEeeccceeeecCCCCCCcCCCCccccc--cCCCccee
Q 037120 328 ------------SQEIHSIDLDPSCSYQLAFHLDDGWS--GVLDVYNSRVSHVHCPPPAWLSDSNNSADQ--LHLRKPSW 391 (489)
Q Consensus 328 ------------~~~i~~~~~~p~~~~~~~~~~~~~w~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 391 (489)
...+..+.+.++....+....+.... ..... .+....+... .........+.. -....+.+
T Consensus 205 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 281 (360)
T d1k32a3 205 PDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDL-NDMYKRSSPI--NVDPGDYRMIIPLESSILIYSV 281 (360)
T ss_dssp ECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCC-TTGGGGCEEC--SCCCBCEEEEEECSSEEEEEEC
T ss_pred ccccccceeeccccceEEEecccCccccceECCCcCcccccceee-cccccceeec--ccCcCceeEeeecCCCceEEEE
Confidence 01111222211111110000000000 00000 0000000000 000000000000 00000111
Q ss_pred ecC--CcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCc
Q 037120 392 LST--NSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKN 469 (489)
Q Consensus 392 ~~~--~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~d 469 (489)
... ...++++++.++.|++||+.++ +. . .|.+.|.+++|+|++++|++++.|
T Consensus 282 ~~~~~~~~~~~~~~~~~~i~~~d~~~~----------~~----~------------~~~~~v~~~~~SpDG~~l~~~~~D 335 (360)
T d1k32a3 282 PVHGEFAAYYQGAPEKGVLLKYDVKTR----------KV----T------------EVKNNLTDLRLSADRKTVMVRKDD 335 (360)
T ss_dssp CCCCSHHHHHHCCCCCEEEEEEETTTC----------CE----E------------EEEEEEEEEEECTTSCEEEEEETT
T ss_pred EecCCCeeEEEecCCCCEEEEEECCCC----------eE----E------------EecCCcCEEEECCCCCEEEEEECC
Confidence 111 1345667788899999999877 32 2 466779999999999999999999
Q ss_pred ceeEEEecccccc
Q 037120 470 SSLLVVSQKQQCT 482 (489)
Q Consensus 470 g~i~v~~~~~~~~ 482 (489)
|.|++|..++...
T Consensus 336 g~i~v~d~~~~~~ 348 (360)
T d1k32a3 336 GKIYTFPLEKPED 348 (360)
T ss_dssp SCEEEEESSCTTS
T ss_pred CeEEEEECCCCCc
Confidence 9999998766543
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.93 E-value=1.4e-24 Score=200.25 Aligned_cols=235 Identities=14% Similarity=0.152 Sum_probs=167.5
Q ss_pred ecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeec-cCCCCceeEEEEeecCCEEEEEeCCCeEEEEE
Q 037120 206 VGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELS-TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWD 284 (489)
Q Consensus 206 ~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd 284 (489)
.+.||...|++++|+|+++ +|+||+.||+|++||+++++ +.+.+ ..|...|++++|+|++.+ ++++.|+.+++|+
T Consensus 7 ~~~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~--~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~ 82 (299)
T d1nr0a2 7 VRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGI--SNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVP 82 (299)
T ss_dssp EECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCC--EEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEEC
T ss_pred EcCCCCCCcEEEEECCCCC-EEEEEcCCCeEEEEECCCCc--EEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEec
Confidence 3489999999999999999 99999999999999999876 44444 478999999999999974 6777899999999
Q ss_pred cCCCcc---cceeecCCccCCCCeeEEEeCCCCcceeeccc-----------cceeeccceeEEEeCCCCCeEEEEEecC
Q 037120 285 LRGGRT---SAPFHNHKEVCHLPLTSLKLASMLEKIGTLKA-----------QSKIVSQEIHSIDLDPSCSYQLAFHLDD 350 (489)
Q Consensus 285 ~~~~~~---~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~-----------~~~~~~~~i~~~~~~p~~~~~~~~~~~~ 350 (489)
...... ......+... +.+++|++++..+..... ........+..++++|++.++++++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~----~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 158 (299)
T d1nr0a2 83 AGGSGVDSSKAVANKLSSQ----PLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDS 158 (299)
T ss_dssp SSSSSSCTTSCCEEECSSC----EEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTS
T ss_pred cCCcccccccccccccccc----ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 876432 1222334444 899999999987632110 1111234678899999999888776655
Q ss_pred CceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccc
Q 037120 351 GWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIE 430 (489)
Q Consensus 351 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~ 430 (489)
. ..++++..+........ .. ...+..++|.|+ +.++++|+.|+.|++||+.++ ....
T Consensus 159 ~-i~~~d~~~~~~~~~~~~-----~~------~~~i~~~~~~~~-~~~l~~~~~d~~i~~~~~~~~----------~~~~ 215 (299)
T d1nr0a2 159 K-VHVYKLSGASVSEVKTI-----VH------PAEITSVAFSNN-GAFLVATDQSRKVIPYSVANN----------FELA 215 (299)
T ss_dssp E-EEEEEEETTEEEEEEEE-----EC------SSCEEEEEECTT-SSEEEEEETTSCEEEEEGGGT----------TEES
T ss_pred c-ccccccccccccccccc-----cc------cccccccccccc-ccccccccccccccccccccc----------cccc
Confidence 4 23444433332221110 00 011233566665 456778899999999999876 3322
Q ss_pred hhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEecccc
Q 037120 431 SLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 431 ~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~ 480 (489)
... .+.+|...|++++|+|++.+|++|+.||.|.||..+..
T Consensus 216 ~~~---------~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~ 256 (299)
T d1nr0a2 216 HTN---------SWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKP 256 (299)
T ss_dssp CCC---------CCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCT
T ss_pred ccc---------cccccccccccccccccccceEEEcCCCEEEEEECCCC
Confidence 211 12279999999999999999999999999999976543
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=2.4e-24 Score=206.94 Aligned_cols=208 Identities=13% Similarity=0.167 Sum_probs=143.7
Q ss_pred CceeEEEECCC-----CcEEEEEecCCeEEEEeCCCcccccCCCCCC-CCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 97 PGISALDFDCK-----GIYLVSATRSGCLTVHDFESLYYQCNGTLPG-VGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 97 ~~V~~~~fs~~-----g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~-~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
..+..++|.++ +.++++++.||.+++|++............. ...................+.+++|+|++ +
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg--~ 197 (393)
T d1sq9a_ 120 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--L 197 (393)
T ss_dssp SCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--E
T ss_pred CceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC--E
Confidence 34667777765 5789999999999999986422111100000 00000000011111222238899999986 8
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCc---EEEEECCCCCcC
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGV---VNIWDRRVGVLP 247 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~---i~iwd~~~~~~~ 247 (489)
|++|+.| |+|+|||+.... +...+.. ...+.+|...|++++|+|+++ +|++|+.|++ |++||+++++..
T Consensus 198 lasgs~D-g~i~iwd~~~~~--~~~~~~~----~~~l~~h~~~V~~l~~spdg~-~l~sgs~D~t~~~i~lwd~~~g~~~ 269 (393)
T d1sq9a_ 198 IATGFNN-GTVQISELSTLR--PLYNFES----QHSMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERI 269 (393)
T ss_dssp EEEECTT-SEEEEEETTTTE--EEEEEEC----CC---CCCCCEEEEEECSSTT-EEEEEEEETTEEEEEEEETTTCCEE
T ss_pred EEEEeCC-CcEEEEeecccc--ccccccc----ccccccccceEEEcccccccc-eeeeecCCCCcceeeecccccceee
Confidence 8899988 999999994331 1122222 223478999999999999999 9999998874 899999987521
Q ss_pred -----------ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCee----EEEeCC
Q 037120 248 -----------SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLT----SLKLAS 312 (489)
Q Consensus 248 -----------~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~----~l~~~~ 312 (489)
....+.+|.+.|++++|+|++++|++++.|++|+|||+++++++.++++|.+. |. .++|++
T Consensus 270 ~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~----v~~~~~~~~~~~ 345 (393)
T d1sq9a_ 270 GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDD----IEIEEDILAVDE 345 (393)
T ss_dssp EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGG----CSSGGGCCCBCT
T ss_pred eeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCc----ccCCccEEEECC
Confidence 11122489999999999999999999999999999999999999999999876 53 456666
Q ss_pred CCccee
Q 037120 313 MLEKIG 318 (489)
Q Consensus 313 ~~~~i~ 318 (489)
++..++
T Consensus 346 ~~~~~~ 351 (393)
T d1sq9a_ 346 HGDSLA 351 (393)
T ss_dssp TSCBCS
T ss_pred CCCEEE
Confidence 665543
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=1.4e-23 Score=196.27 Aligned_cols=233 Identities=11% Similarity=0.133 Sum_probs=165.5
Q ss_pred ecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEc
Q 037120 206 VGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDL 285 (489)
Q Consensus 206 ~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~ 285 (489)
++.||.+.|++|+|+|+++ +|+||+.||+|+|||+.+++ .+..+..|...|.+++|+|++.++++++.|+.+++|+.
T Consensus 50 tL~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~--~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~ 126 (340)
T d1tbga_ 50 TLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTN--KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL 126 (340)
T ss_dssp EECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTE--EEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEES
T ss_pred EECCCCCCEEEEEECCCCC-EEEEEECCCceeeeecccce--eEEEEecccccEEeeEeeccceeeeeecccceeecccc
Confidence 4589999999999999999 99999999999999999876 66677789999999999999999999999999999998
Q ss_pred CCCcc----cceeecCCccCCCCeeEEEeCCCCcceeec---------------cccceeeccceeEEEeCCCCCeEEEE
Q 037120 286 RGGRT----SAPFHNHKEVCHLPLTSLKLASMLEKIGTL---------------KAQSKIVSQEIHSIDLDPSCSYQLAF 346 (489)
Q Consensus 286 ~~~~~----~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~---------------~~~~~~~~~~i~~~~~~p~~~~~~~~ 346 (489)
..... ...+.+|... ........+....... ..........+....+.+....++++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (340)
T d1tbga_ 127 KTREGNVRVSRELAGHTGY----LSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp SSSCSCCCEEEEECCCSSC----EEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred cccccccccceeccccccc----ccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEe
Confidence 77543 3344555544 4444443333222110 01122234567778888888877776
Q ss_pred EecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccC
Q 037120 347 HLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYN 426 (489)
Q Consensus 347 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~ 426 (489)
..++. ..+++...+........ . ...+..++|+|++ .++++|+.|+.|++||+...
T Consensus 203 ~~d~~-v~i~d~~~~~~~~~~~~------h------~~~i~~v~~~p~~-~~l~s~s~d~~i~~~~~~~~---------- 258 (340)
T d1tbga_ 203 ACDAS-AKLWDVREGMCRQTFTG------H------ESDINAICFFPNG-NAFATGSDDATCRLFDLRAD---------- 258 (340)
T ss_dssp ETTTE-EEEEETTTTEEEEEECC------C------SSCEEEEEECTTS-SEEEEEETTSCEEEEETTTT----------
T ss_pred ecCce-EEEEECCCCcEEEEEeC------C------CCCeEEEEECCCC-CEEEEEeCCCeEEEEeeccc----------
Confidence 65543 23344333332221110 0 0112335666654 57788899999999999877
Q ss_pred cccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 427 EDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
..+..+.. ..|...|++++|+|++.+|++|+.||.|.||..+.
T Consensus 259 ~~~~~~~~----------~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~ 301 (340)
T d1tbga_ 259 QELMTYSH----------DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301 (340)
T ss_dssp EEEEEECC----------TTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTT
T ss_pred cccccccc----------ccccCceEEEEECCCCCEEEEEECCCEEEEEECCC
Confidence 44433321 15778899999999999999999999999997543
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=1.1e-22 Score=189.62 Aligned_cols=270 Identities=11% Similarity=-0.012 Sum_probs=164.0
Q ss_pred ccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEE
Q 037120 149 LLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLI 228 (489)
Q Consensus 149 ~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 228 (489)
.+|... |++|+|+|++. +|++++.| |+|+|||+...... ..+ . ...+|..+|.+++|+|++..+|+
T Consensus 8 ~~h~d~---I~~l~fsp~~~-~L~s~s~D-g~v~iwd~~~~~~~--~~~---~----~~~~h~~~V~~v~f~~~~~~~l~ 73 (342)
T d1yfqa_ 8 QAPKDY---ISDIKIIPSKS-LLLITSWD-GSLTVYKFDIQAKN--VDL---L----QSLRYKHPLLCCNFIDNTDLQIY 73 (342)
T ss_dssp SCCSSC---EEEEEEEGGGT-EEEEEETT-SEEEEEEEETTTTE--EEE---E----EEEECSSCEEEEEEEESSSEEEE
T ss_pred CCCCCC---EEEEEEeCCCC-EEEEEECC-CeEEEEEccCCCcc--eEE---E----EecCCCCCEEEEEEeCCCCCEEE
Confidence 345555 99999999986 88888888 99999999543211 111 1 11468999999999998766899
Q ss_pred EEeCCCcEEEEECCCCCcCceeecc-CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCcc--CCCCe
Q 037120 229 ASDTHGVVNIWDRRVGVLPSLELST-GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEV--CHLPL 305 (489)
Q Consensus 229 s~s~dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~--~~~~v 305 (489)
+|+.||.|++||+..... ..... .+........+.++...+++++.|+++++||++++........+... .....
T Consensus 74 sg~~d~~v~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~ 151 (342)
T d1yfqa_ 74 VGTVQGEILKVDLIGSPS--FQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKN 151 (342)
T ss_dssp EEETTSCEEEECSSSSSS--EEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCC
T ss_pred Ecccccceeeeecccccc--cccccccccccccccccccccccccccccccccceeeccccccceeeeccccccccccee
Confidence 999999999999988653 22222 33444556667788889999999999999999875543222211100 00111
Q ss_pred eEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccC
Q 037120 306 TSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLH 385 (489)
Q Consensus 306 ~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (489)
..+ .+.+.+..++.++.++. ..++++........... ... ....
T Consensus 152 ~~~--------------------------~~~~~~~~~~~~~~d~~-i~~~~~~~~~~~~~~~~----~~~-----~~~~ 195 (342)
T d1yfqa_ 152 KIF--------------------------TMDTNSSRLIVGMNNSQ-VQWFRLPLCEDDNGTIE----ESG-----LKYQ 195 (342)
T ss_dssp CEE--------------------------EEEECSSEEEEEESTTE-EEEEESSCCTTCCCEEE----ECS-----CSSC
T ss_pred eee--------------------------eeeccCCceeeecCCCc-EEEEecccCcccceeee----ecc-----cccc
Confidence 122 22233334444333322 12222221111100000 000 0001
Q ss_pred CCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhh---hcccCCcccCCCceEEEEeeCCCCe
Q 037120 386 LRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTK---LKKENRFVPLSEGVTACVTHPLNNT 462 (489)
Q Consensus 386 ~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~V~~va~~p~~~~ 462 (489)
.....+.+..+..+++++.|+.+.+|++.... .......... ........+|...|++++|||++++
T Consensus 196 ~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~ 265 (342)
T d1yfqa_ 196 IRDVALLPKEQEGYACSSIDGRVAVEFFDDQG----------DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF 265 (342)
T ss_dssp EEEEEECSGGGCEEEEEETTSEEEEEECCTTC----------CSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCC
T ss_pred eeeeEeecCCCCEEEeecCCCeEEEEEecCCc----------ceeeccccceeeeeeeccCCCcccccceeEEecCCccE
Confidence 12233445557788899999999999987662 1111000000 0001112378889999999999999
Q ss_pred EEeccCcceeEEEecccc
Q 037120 463 IVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 463 i~sgs~dg~i~v~~~~~~ 480 (489)
|||||.||.|+||..+.+
T Consensus 266 lasg~~Dg~v~vWD~~~~ 283 (342)
T d1yfqa_ 266 LYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp EEEEETTSCEEEEETTTT
T ss_pred EEEECCCCEEEEEECCCC
Confidence 999999999999976543
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=3.2e-22 Score=187.78 Aligned_cols=265 Identities=12% Similarity=0.106 Sum_probs=153.8
Q ss_pred cccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEE
Q 037120 148 HLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRL 227 (489)
Q Consensus 148 ~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l 227 (489)
+.||.... |+|++|+ + .+|++|+.| |+|+|||+... + ...++.+|...|++++|+|+ . +|
T Consensus 8 L~GH~~~v--itc~~~~--~-~~l~tgs~D-g~i~vWd~~~~-----~-------~~~~l~~H~~~V~~l~~s~~-~-~l 67 (355)
T d1nexb2 8 LRGHMTSV--ITCLQFE--D-NYVITGADD-KMIRVYDSINK-----K-------FLLQLSGHDGGVWALKYAHG-G-IL 67 (355)
T ss_dssp EECCSSSC--EEEEEEE--T-TEEEEEETT-TEEEEEETTTT-----E-------EEEEEECCSSCEEEEEEETT-T-EE
T ss_pred ECCcCCCc--EEEEEEC--C-CEEEEEeCC-CeEEEEECCCC-----c-------EEEEEECCCCCEEEEEEcCC-C-EE
Confidence 56787663 4777775 3 388999988 99999999322 1 22334789999999999985 4 79
Q ss_pred EEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeE
Q 037120 228 IASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTS 307 (489)
Q Consensus 228 ~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~ 307 (489)
++|+.|+.|++|+....+.........+........+.+++.++++++.|+.|++||+++...+........ ...
T Consensus 68 ~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~-----~~~ 142 (355)
T d1nexb2 68 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHD-----YPL 142 (355)
T ss_dssp EEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------C-----CCE
T ss_pred EEEecccccccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccce-----ecc
Confidence 999999999999998865322222223344456677888999999999999999999998765443332111 111
Q ss_pred EEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCC
Q 037120 308 LKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLR 387 (489)
Q Consensus 308 l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (489)
....+....... .....+...+. .+.+++..++....+.. ..+++...+.......... ....
T Consensus 143 ~~~~~~~~~~~~--~~~~~~~~~v~--~~~~~~~~~~~~~~d~~-i~~~d~~~~~~~~~~~~~~------------~~~~ 205 (355)
T d1nexb2 143 VFHTPEENPYFV--GVLRGHMASVR--TVSGHGNIVVSGSYDNT-LIVWDVAQMKCLYILSGHT------------DRIY 205 (355)
T ss_dssp EESCTTTCTTEE--EEEECCSSCEE--EEEEETTEEEEEETTSC-EEEEETTTTEEEEEECCCS------------SCEE
T ss_pred ceecccccccee--eeeeecccccc--ccccccceeeeecccce-eeeeecccccceeeeeccc------------cccc
Confidence 222222111100 00011111222 23344555555444432 1223332222211111000 0011
Q ss_pred cceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEecc
Q 037120 388 KPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGT 467 (489)
Q Consensus 388 ~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs 467 (489)
...+.+. +.++++++.|+.|++||+.++ ..+..+. +|...|++++++| ++|++|+
T Consensus 206 ~~~~~~~-~~~~~~~~~d~~i~i~d~~~~----------~~~~~~~------------~h~~~v~~~~~~~--~~l~~~~ 260 (355)
T d1nexb2 206 STIYDHE-RKRCISASMDTTIRIWDLENG----------ELMYTLQ------------GHTALVGLLRLSD--KFLVSAA 260 (355)
T ss_dssp EEEEETT-TTEEEEEETTSCEEEEETTTC----------CEEEEEC------------CCSSCCCEEEECS--SEEEEEC
T ss_pred ccccccc-ceeeecccccceEEeeecccc----------ccccccc------------ccccccccccccc--ceeeeee
Confidence 2233443 445666678888888888777 6666666 7888888887764 5788888
Q ss_pred CcceeEEEeccc
Q 037120 468 KNSSLLVVSQKQ 479 (489)
Q Consensus 468 ~dg~i~v~~~~~ 479 (489)
.||.|++|..+.
T Consensus 261 ~dg~i~iwd~~~ 272 (355)
T d1nexb2 261 ADGSIRGWDAND 272 (355)
T ss_dssp TTSEEEEEETTT
T ss_pred cccccccccccc
Confidence 888888886544
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.87 E-value=4.6e-21 Score=185.76 Aligned_cols=323 Identities=11% Similarity=-0.040 Sum_probs=198.3
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..+..++|||||++|++++.||.|++||+.+....... .. .....|... +.+..|+||++.+++++..
T Consensus 62 ~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~------~i---~~~~~~~~~---~~s~~~SpDG~~l~vs~~~ 129 (432)
T d1qksa2 62 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA------EI---KIGSEARSI---ETSKMEGWEDKYAIAGAYW 129 (432)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE------EE---ECCSEEEEE---EECCSTTCTTTEEEEEEEE
T ss_pred CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEE------EE---ecCCCCCCe---EEecccCCCCCEEEEEcCC
Confidence 46999999999999999999999999999874322100 00 000112222 6667888999877788887
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceee-eeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSV-TVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGS 255 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h 255 (489)
+ ++|++||..... ....+...... ......+......+.++|++..++++...++.|.+||..+.+...+..+ .+
T Consensus 130 ~-~~v~i~d~~t~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i-~~ 205 (432)
T d1qksa2 130 P-PQYVIMDGETLE--PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SA 205 (432)
T ss_dssp T-TEEEEEETTTCC--EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-EC
T ss_pred C-CeEEEEeCcccc--ceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEE-cc
Confidence 7 999999995432 11111110000 0000224567788999999995667778899999999987653222122 44
Q ss_pred CCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcccceeecCCcc-CCCCeeEEEeCCCCcceeecc------------
Q 037120 256 HGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFHNHKEV-CHLPLTSLKLASMLEKIGTLK------------ 321 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~i~~~~------------ 321 (489)
...+..++|+|+|+++++++. ++.+.++|..+++.+..+...... .........+...+.......
T Consensus 206 g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~ 285 (432)
T d1qksa2 206 ERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTD 285 (432)
T ss_dssp CSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECC
T ss_pred cCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccc
Confidence 567889999999999888877 779999999988775554421111 001133333333332221111
Q ss_pred -ccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEE
Q 037120 322 -AQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAV 400 (489)
Q Consensus 322 -~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 400 (489)
.....+...+....++|++..+++...++.- .++.......... ..+ ...+|+ +..++
T Consensus 286 ~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~-~lw~~~~~~~~~~------------------~~~-sv~vpD-g~~la 344 (432)
T d1qksa2 286 PEGHPDNAWKILDSFPALGGGSLFIKTHPNSQ-YLYVDATLNPEAE------------------ISG-SVAVFD-IKAMT 344 (432)
T ss_dssp TTTCTTTBTSEEEEEECSCSCCCCEECCTTCS-EEEEECTTCSSHH------------------HHT-CEEEEE-GGGCC
T ss_pred cccccccccEEEEEEEcCCCCeEEEEecCCcc-ceeecccCCCCCC------------------eee-EEEEEe-chhhc
Confidence 1111223456777788877776666655541 1222111110000 000 111233 56778
Q ss_pred eecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEec-----cCcceeEEE
Q 037120 401 GSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAG-----TKNSSLLVV 475 (489)
Q Consensus 401 sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sg-----s~dg~i~v~ 475 (489)
+++.|+.+++||+.+. . .+. .|...|.+++|+|+|+.++.+ ..+|.|.||
T Consensus 345 ~~s~d~~~k~w~~~~~----------~---~l~------------~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~ 399 (432)
T d1qksa2 345 GDGSDPEFKTLPIAEW----------A---GIT------------EGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVV 399 (432)
T ss_dssp CSSSCCCEEEECHHHH----------H---TCC------------SSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEE
T ss_pred ccccCCceEecccccc----------c---ccC------------CCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEE
Confidence 8899999999998654 2 223 577789999999999877444 357889999
Q ss_pred eccccc
Q 037120 476 SQKQQC 481 (489)
Q Consensus 476 ~~~~~~ 481 (489)
..+...
T Consensus 400 D~~T~k 405 (432)
T d1qksa2 400 DDKTLE 405 (432)
T ss_dssp ETTTTE
T ss_pred ECCCce
Confidence 766543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.86 E-value=2.5e-20 Score=180.66 Aligned_cols=320 Identities=12% Similarity=0.023 Sum_probs=187.0
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..+..++|||||++|++++.||+|++||+.+.+..... .. ....+|... +.+++|+|+++.+++++..
T Consensus 62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~------~i---~~~~~~~~~---~~s~~~spDG~~l~v~~~~ 129 (426)
T d1hzua2 62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVA------EI---KIGIEARSV---ESSKFKGYEDRYTIAGAYW 129 (426)
T ss_dssp SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEE------EE---ECCSEEEEE---EECCSTTCTTTEEEEEEEE
T ss_pred CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEE------EE---eCCCCCcce---EEeeeecCCCCEEEEeecC
Confidence 46899999999999999999999999999985432210 00 000122222 6678899999877777767
Q ss_pred CCCEEEEEEeccCCCCCceeeeecee-eeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRS-VTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGS 255 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h 255 (489)
+ +++++||..... ....+..... .......+......+.+++++...+.+....+.+.+++........+ ....+
T Consensus 130 ~-~~v~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~ 205 (426)
T d1hzua2 130 P-PQFAIMDGETLE--PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV-TSIGA 205 (426)
T ss_dssp S-SEEEEEETTTCC--EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEE-EEEEC
T ss_pred C-CeEEEEcCCccc--eeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceee-EEecc
Confidence 7 999999984331 1111110000 00000123345566777777773344444556676777665442222 23366
Q ss_pred CCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEE
Q 037120 256 HGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSI 334 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~ 334 (489)
...+..+.|+|++++++++.. +..+.++|..+++.+..+...... .+...+.+...+ ...+...
T Consensus 206 ~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-------------~~~~~~~ 270 (426)
T d1hzua2 206 APFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP--HPGRGANFVHPK-------------YGPVWST 270 (426)
T ss_dssp CSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCC--CCSCCEEEEETT-------------TEEEEEE
T ss_pred CCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcc--cccceeeeecCC-------------CCceEEe
Confidence 778899999999999999876 888999999998876666533222 112222222111 1122333
Q ss_pred EeCCCCCeEEEEEecCCc---e-EEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEE------eecC
Q 037120 335 DLDPSCSYQLAFHLDDGW---S-GVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAV------GSSS 404 (489)
Q Consensus 335 ~~~p~~~~~~~~~~~~~w---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------sgs~ 404 (489)
..++++...+.......| . .......+|... +..++++|++..+++ +++.
T Consensus 271 ~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~--------------------v~~v~~sPdg~~l~v~~~~~~s~~~ 330 (426)
T d1hzua2 271 SHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGG--------------------SLFIKTHPKSSHLYVDTTFNPDARI 330 (426)
T ss_dssp ECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSC--------------------CCCEECCTTCSEEEECCTTCSSHHH
T ss_pred ccCCCceEEEeeccccccccccceEeEEEecCCCc--------------------eeEEEcCCCCceEEEeecCCCCccc
Confidence 344444333333222221 1 122222333221 233566666666665 5677
Q ss_pred CCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeE-Ee----ccCcceeEEEeccc
Q 037120 405 DHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTI-VA----GTKNSSLLVVSQKQ 479 (489)
Q Consensus 405 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i-~s----gs~dg~i~v~~~~~ 479 (489)
|++|+|||+.++ +....+...... .....|...|.+++|+|+|+.| ++ ++.+|.|.||..+.
T Consensus 331 ~~tv~vwd~~t~----------~~~~~~~~~~~~---~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T 397 (426)
T d1hzua2 331 SQSVAVFDLKNL----------DAKYQVLPIAEW---ADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT 397 (426)
T ss_dssp HTCEEEEETTCT----------TSCCEEECHHHH---HCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTT
T ss_pred CCEEEEEECCCC----------CcCeEEeccchh---cccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCC
Confidence 899999999988 433322100000 0111466779999999999866 33 35789999997664
Q ss_pred c
Q 037120 480 Q 480 (489)
Q Consensus 480 ~ 480 (489)
.
T Consensus 398 ~ 398 (426)
T d1hzua2 398 L 398 (426)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.86 E-value=2.5e-19 Score=164.22 Aligned_cols=268 Identities=10% Similarity=0.029 Sum_probs=174.6
Q ss_pred EEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCC
Q 037120 111 LVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYIS 190 (489)
Q Consensus 111 la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~ 190 (489)
.++++.|++|.|||+++.+.... +. .... +..++|+|+++.++++++.+ +.|++||+...
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~--------i~-------~g~~---p~~va~spdG~~l~v~~~~~-~~i~v~d~~t~- 64 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTAT--------IP-------VGSN---PMGAVISPDGTKVYVANAHS-NDVSIIDTATN- 64 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEE--------EE-------CSSS---EEEEEECTTSSEEEEEEGGG-TEEEEEETTTT-
T ss_pred EEEECCCCEEEEEECCCCeEEEE--------EE-------CCCC---ceEEEEeCCCCEEEEEECCC-CEEEEEECCCC-
Confidence 35677899999999998654441 10 0111 67799999998777777777 99999999432
Q ss_pred CCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCE
Q 037120 191 DEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQI 270 (489)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 270 (489)
..+... ..| ..+..++|++++...++++..++.+.+||..+++ ....+ .+.....+++|+|++..
T Consensus 65 ----~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~dg~~ 129 (301)
T d1l0qa2 65 ----NVIATV-------PAG-SSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNT--VAGTV-KTGKSPLGLALSPDGKK 129 (301)
T ss_dssp ----EEEEEE-------ECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEE-ECSSSEEEEEECTTSSE
T ss_pred ----ceeeee-------ecc-ccccccccccccccccccccccceeeecccccce--eeeec-cccccceEEEeecCCCe
Confidence 222211 222 2568899999999666677788999999998865 44444 33456789999999999
Q ss_pred EEEEeC-CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEec
Q 037120 271 IFAAGK-HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLD 349 (489)
Q Consensus 271 l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~ 349 (489)
++.++. ++.+.+|+..+++.+..+..+. . +..+.++|++..+. ....+
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~--------------------------~~~~~ 178 (301)
T d1l0qa2 130 LYVTNNGDKTVSVINTVTKAVINTVSVGR-S----PKGIAVTPDGTKVY--------------------------VANFD 178 (301)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECCS-S----EEEEEECTTSSEEE--------------------------EEETT
T ss_pred eeeeeccccceeeeeccccceeeecccCC-C----ceEEEeecccccee--------------------------eeccc
Confidence 877765 8999999999988776666432 3 56677777665543 22222
Q ss_pred CCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEee--cCCCcEEEEeccCCCCCCeeeccCc
Q 037120 350 DGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGS--SSDHGIHLLDFFPGSSSPSHVDYNE 427 (489)
Q Consensus 350 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg--s~d~~i~vwd~~~~~~~~~~~~~~~ 427 (489)
.....+.............. . .......+.+++..+++++ ..++.|++||..++ +
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~----------~ 235 (301)
T d1l0qa2 179 SMSISVIDTVTNSVIDTVKV--E-----------AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN----------K 235 (301)
T ss_dssp TTEEEEEETTTTEEEEEEEC--S-----------SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT----------E
T ss_pred ccccccccccceeeeecccc--c-----------CCcceeeccccccccccccccceeeeeeeeecCCC----------e
Confidence 11100010000000000000 0 0001234555556655544 34578999999988 6
Q ss_pred ccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeE-EeccCcceeEEEecccc
Q 037120 428 DIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTI-VAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i-~sgs~dg~i~v~~~~~~ 480 (489)
.+..+. +...+.+++|+|++++| ++++.|+.|.||..+..
T Consensus 236 ~~~~~~-------------~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~ 276 (301)
T d1l0qa2 236 ITARIP-------------VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATN 276 (301)
T ss_dssp EEEEEE-------------CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred EEEEEc-------------CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence 665544 44568999999999865 78889999999976543
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.86 E-value=1.1e-20 Score=178.18 Aligned_cols=184 Identities=8% Similarity=-0.085 Sum_probs=132.9
Q ss_pred cCCCceeEEEECCCCcEEEEEecCC--eEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEE
Q 037120 94 FGKPGISALDFDCKGIYLVSATRSG--CLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEV 171 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~dg--~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l 171 (489)
.+...|.+++|+|||++|++++.+. .|++||+++.+... +..|... |.+++|+|++. .|
T Consensus 40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~---------------~~~~~~~---v~~~~~spdg~-~l 100 (360)
T d1k32a3 40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK---------------FEENLGN---VFAMGVDRNGK-FA 100 (360)
T ss_dssp SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEE---------------CCCCCCS---EEEEEECTTSS-EE
T ss_pred cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEE---------------eeCCCce---EEeeeeccccc-cc
Confidence 3556799999999999998877653 79999998844332 1334444 99999999987 66
Q ss_pred EEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe----------CCCcEEEEEC
Q 037120 172 ACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD----------THGVVNIWDR 241 (489)
Q Consensus 172 ~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s----------~dg~i~iwd~ 241 (489)
++++.+ +.+++|++.... . .. .+..|...+.+++|+|+++ +|+.++ .++.+++||+
T Consensus 101 ~~~~~~-~~~~~~~~~~~~-----~---~~----~~~~~~~~~~~~~~spdg~-~la~~~~~~~~~~~~~~~~~~~v~d~ 166 (360)
T d1k32a3 101 VVANDR-FEIMTVDLETGK-----P---TV----IERSREAMITDFTISDNSR-FIAYGFPLKHGETDGYVMQAIHVYDM 166 (360)
T ss_dssp EEEETT-SEEEEEETTTCC-----E---EE----EEECSSSCCCCEEECTTSC-EEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred ceeccc-cccccccccccc-----e---ee----eeecccccccchhhcccee-eeeeeccccccceeeccccceeeecc
Confidence 777777 999999994321 1 11 1255777899999999999 777543 3456999999
Q ss_pred CCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc-------cceeecCCccCCCCeeEEEeCCCC
Q 037120 242 RVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT-------SAPFHNHKEVCHLPLTSLKLASML 314 (489)
Q Consensus 242 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~-------~~~~~~~~~~~~~~v~~l~~~~~~ 314 (489)
.+++ .. ....|...+.+++|+|+|+.|++++.|+.+++||...... ...+..+... +..+.|++++
T Consensus 167 ~~~~--~~-~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~s~~~ 239 (360)
T d1k32a3 167 EGRK--IF-AATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGS----PNPTKLVPRS 239 (360)
T ss_dssp TTTE--EE-ECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTC----CCGGGCCCGG
T ss_pred ccCc--ee-eecccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCc----cccceECCCc
Confidence 8865 33 3346677889999999999999999999999999876543 1222233333 4455666666
Q ss_pred cce
Q 037120 315 EKI 317 (489)
Q Consensus 315 ~~i 317 (489)
..+
T Consensus 240 ~~~ 242 (360)
T d1k32a3 240 MTS 242 (360)
T ss_dssp GSC
T ss_pred Ccc
Confidence 554
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.84 E-value=2.3e-20 Score=170.43 Aligned_cols=228 Identities=11% Similarity=0.009 Sum_probs=152.1
Q ss_pred ccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcE
Q 037120 147 KHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSR 226 (489)
Q Consensus 147 ~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 226 (489)
.+.+|... |++++|+| |++|+.| |+|++||+.. .. .+|...|.+++++++. .
T Consensus 8 ~l~gH~~~---I~~l~~s~-----l~sgs~D-g~v~~Wd~~~-------------~~----~~h~~~V~~~~~~~~~--~ 59 (287)
T d1pgua2 8 TISGHNKG---ITALTVNP-----LISGSYD-GRIMEWSSSS-------------MH----QDHSNLIVSLDNSKAQ--E 59 (287)
T ss_dssp EECCCSSC---EEEEETTT-----TEEEETT-SCEEETTTTE-------------EE----CCCCSCEEEEECCSTT--C
T ss_pred EECCCCCc---eEEEEECc-----EEEEeCC-CeEEEEECCC-------------CC----CCCCCCEEEEEecCCC--e
Confidence 35678777 99999986 7888888 9999999821 11 5789999999998754 5
Q ss_pred EEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCee
Q 037120 227 LIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLT 306 (489)
Q Consensus 227 l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~ 306 (489)
+++++.|++|++||+...+ ....+.++++++++..+++ +.++.+.+|+..+++.+..+..+. . +.
T Consensus 60 ~~s~s~D~~v~~w~~~~~~---------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~----~~ 124 (287)
T d1pgua2 60 YSSISWDDTLKVNGITKHE---------FGSQPKVASANNDGFTAVL-TNDDDLLILQSFTGDIIKSVRLNS-P----GS 124 (287)
T ss_dssp CEEEETTTEEEETTEEEEE---------CSSCEEEEEECSSSEEEEE-ETTSEEEEEETTTCCEEEEEECSS-C----EE
T ss_pred EEEEeeccccccccccccc---------cccceeeeeeccCCceEEE-eecccceeeeccceeeeeeccccc-e----ee
Confidence 8999999999999876422 1345778889888876655 556678999999887766655322 1 22
Q ss_pred EEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCC
Q 037120 307 SLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHL 386 (489)
Q Consensus 307 ~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (489)
+++ +++..+++.+.++....+++............ . . ...+
T Consensus 125 --~~~--------------------------~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~--~---~------~~~v 165 (287)
T d1pgua2 125 --AVS--------------------------LSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKT--P---L------RAKP 165 (287)
T ss_dssp --EEE--------------------------ECSSEEEEEETTTSCEEEEETTEEEEEEECSS--C---C------SSCE
T ss_pred --eee--------------------------ccCcceeeeccccceeeeeeccccceeeeeee--c---c------CCce
Confidence 222 23333444333333222222211111110000 0 0 0112
Q ss_pred CcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccc-hhhHhhhhcccCCcccCCCceEEEEeeCCC-----
Q 037120 387 RKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIE-SLSERTKLKKENRFVPLSEGVTACVTHPLN----- 460 (489)
Q Consensus 387 ~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~V~~va~~p~~----- 460 (489)
..++|+|+ +.++++|+.|+.|++||+.+. +... .+. +|...|++++|+|.+
T Consensus 166 ~~~~~s~~-~~~l~~g~~dg~i~i~d~~~~----------~~~~~~~~------------~h~~~v~~~~~~p~~~~~~~ 222 (287)
T d1pgua2 166 SYISISPS-ETYIAAGDVMGKILLYDLQSR----------EVKTSRWA------------FRTSKINAISWKPAEKGANE 222 (287)
T ss_dssp EEEEECTT-SSEEEEEETTSCEEEEETTTT----------EEEECCSC------------CCSSCEEEEEECCCC-----
T ss_pred eEEEeccC-ccccccccccccccceeeccc----------cccccccc------------ccccccceeeeccccccccc
Confidence 33566666 457788899999999999877 4332 234 899999999999854
Q ss_pred -----CeEEeccCcceeEEEeccc
Q 037120 461 -----NTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 461 -----~~i~sgs~dg~i~v~~~~~ 479 (489)
.+||+|+.||.|+||..++
T Consensus 223 ~~~~~~~l~sgs~D~~i~iw~~~~ 246 (287)
T d1pgua2 223 EEIEEDLVATGSLDTNIFIYSVKR 246 (287)
T ss_dssp -CCSCCEEEEEETTSCEEEEESSC
T ss_pred ccCCCCeeEeecCCCeEEEEECCC
Confidence 5899999999999998654
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=1.7e-18 Score=161.01 Aligned_cols=271 Identities=12% Similarity=0.169 Sum_probs=163.8
Q ss_pred cccccccccCCCCCCcee-EEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEe
Q 037120 142 KEDQSKHLLHIPLPQQLD-AVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFS 220 (489)
Q Consensus 142 ~~~~~~~~~h~~~~~~V~-~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 220 (489)
......+.+|... |. |++| +++ +|++|+.| |+|+|||+..+ + ...++.+|...|.+++|+
T Consensus 6 ~~~~~~l~GH~~~---V~s~~~~--~g~-~l~sgs~D-g~i~vWd~~~~-----~-------~~~~~~~h~~~V~~v~~~ 66 (342)
T d2ovrb2 6 LKSPKVLKGHDDH---VITCLQF--CGN-RIVSGSDD-NTLKVWSAVTG-----K-------CLRTLVGHTGGVWSSQMR 66 (342)
T ss_dssp CCCCEEEECSTTS---CEEEEEE--ETT-EEEEEETT-SCEEEEETTTC-----C-------EEEECCCCSSCEEEEEEE
T ss_pred CCcCEEECCcCCc---eEEEEEE--CCC-EEEEEeCC-CeEEEEECCCC-----C-------EEEEEeCCCCCEEEEEeC
Confidence 3344446788887 54 4444 554 78899988 99999999432 1 223458899999999998
Q ss_pred cCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCcc
Q 037120 221 AVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEV 300 (489)
Q Consensus 221 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~ 300 (489)
| . +|++++.|+.+++|+..... .......+...+... ......++.+..|+.+.+||..+++....+......
T Consensus 67 ~--~-~l~s~s~D~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~ 139 (342)
T d2ovrb2 67 D--N-IIISGSTDRTLKVWNAETGE--CIHTLYGHTSTVRCM--HLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAA 139 (342)
T ss_dssp T--T-EEEEEETTSCEEEEETTTTE--EEEEECCCSSCEEEE--EEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSC
T ss_pred C--C-ccccceeccccccccccccc--ceecccccceeEeee--ecccccccccccceeEEEeecccccceeeeeccccc
Confidence 6 3 89999999999999998754 232333334444443 345567788888999999999988775555543322
Q ss_pred CCCCeeEEEeCCCCcceee---------cccc---ceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecC
Q 037120 301 CHLPLTSLKLASMLEKIGT---------LKAQ---SKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHC 368 (489)
Q Consensus 301 ~~~~v~~l~~~~~~~~i~~---------~~~~---~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 368 (489)
.............+. .... ............+.+++.++++++.++. ..+++...+.......
T Consensus 140 ----~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~-i~~~d~~~~~~~~~~~ 214 (342)
T d2ovrb2 140 ----VRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTS-IRVWDVETGNCIHTLT 214 (342)
T ss_dssp ----EEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSC-EEEEETTTCCEEEEEC
T ss_pred ----ceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCe-EEEeecccceeeeEec
Confidence 222211111111110 0000 0011112233444556777777776665 2334433333222111
Q ss_pred CCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCC
Q 037120 369 PPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLS 448 (489)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 448 (489)
.... ...++.++ +.++++|+.|+.|++||+... +....+. ....|.
T Consensus 215 ~~~~--------------~v~~~~~~-~~~l~s~s~d~~i~iwd~~~~----------~~~~~~~---------~~~~~~ 260 (342)
T d2ovrb2 215 GHQS--------------LTSGMELK-DNILVSGNADSTVKIWDIKTG----------QCLQTLQ---------GPNKHQ 260 (342)
T ss_dssp CCCS--------------CEEEEEEE-TTEEEEEETTSCEEEEETTTC----------CEEEEEC---------STTSCS
T ss_pred cccc--------------ceeEEecC-CCEEEEEcCCCEEEEEecccc----------ccccccc---------ccceee
Confidence 1000 00112222 458899999999999999877 4433332 011577
Q ss_pred CceEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 449 EGVTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 449 ~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
..+.+++++| +++++|+.||.|+||.-+.
T Consensus 261 ~~~~~~~~~~--~~~~s~s~Dg~i~iwd~~t 289 (342)
T d2ovrb2 261 SAVTCLQFNK--NFVITSSDDGTVKLWDLKT 289 (342)
T ss_dssp SCEEEEEECS--SEEEEEETTSEEEEEETTT
T ss_pred eceeecccCC--CeeEEEcCCCEEEEEECCC
Confidence 7788887764 6999999999999997653
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.83 E-value=4.6e-19 Score=171.56 Aligned_cols=301 Identities=12% Similarity=0.069 Sum_probs=175.3
Q ss_pred CCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEe
Q 037120 107 KGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDI 186 (489)
Q Consensus 107 ~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~ 186 (489)
.+.++++.+.||.|+|||+.+.+.+.. + ..|. . +..++|+||++ .+++++.| ++|++||+
T Consensus 31 ~~~~~V~~~~dg~v~vwD~~t~~~~~~--------l------~~g~-~---~~~vafSPDGk-~l~~~~~d-~~v~vwd~ 90 (426)
T d1hzua2 31 PNLFSVTLRDAGQIALVDGDSKKIVKV--------I------DTGY-A---VHISRMSASGR-YLLVIGRD-ARIDMIDL 90 (426)
T ss_dssp GGEEEEEETTTTEEEEEETTTCSEEEE--------E------ECCS-S---EEEEEECTTSC-EEEEEETT-SEEEEEET
T ss_pred CeEEEEEEcCCCEEEEEECCCCcEEEE--------E------eCCC-C---eeEEEECCCCC-EEEEEeCC-CCEEEEEc
Confidence 344567888899999999999655542 1 1221 2 88899999997 66677777 99999999
Q ss_pred ccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEee
Q 037120 187 GYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHA 266 (489)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p 266 (489)
...... ..... ....+|...+.+++|+|||+.+++++..++.+.+||..++. +......|...+..+++.+
T Consensus 91 ~t~~~~---~~~~i----~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~--~~~~~~~~~~~~~~~~~~~ 161 (426)
T d1hzua2 91 WAKEPT---KVAEI----KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE--PKQIVSTRGMTVDTQTYHP 161 (426)
T ss_dssp TSSSCE---EEEEE----ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC--EEEEEECCEECSSSCCEES
T ss_pred cCCcee---EEEEE----eCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccc--eeEEeeccCCCccceeecC
Confidence 544211 11111 12356777888899999999445666689999999999876 5555556666666666666
Q ss_pred cCCEEE-EEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEE
Q 037120 267 ENQIIF-AAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLA 345 (489)
Q Consensus 267 ~~~~l~-~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~ 345 (489)
++...+ +.+.|+...++.......+..+..+... ...+. .......+..+.++|+++++++
T Consensus 162 ~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~----~~~~~--------------~~~~~~~~~~~~~~~~g~~~~~ 223 (426)
T d1hzua2 162 EPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID----NLTVT--------------SIGAAPFLADGGWDSSHRYFMT 223 (426)
T ss_dssp CCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSS----SCEEE--------------EEECCSSEEEEEECTTSCEEEE
T ss_pred CCceeEEEECCCCCEEEEecCCCCeEEEEEecccc----ceeeE--------------EeccCCccEeeeECCCCcEEEe
Confidence 665433 3334555555544432222222111111 00000 0112334456667777776666
Q ss_pred EEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecC--CcEEEEeecCCCcEEEEeccCCCCCCeee
Q 037120 346 FHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLST--NSIYAVGSSSDHGIHLLDFFPGSSSPSHV 423 (489)
Q Consensus 346 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~sgs~d~~i~vwd~~~~~~~~~~~ 423 (489)
......-..+++...+............... +...+... +..+.++.+.|+.+.+|+........
T Consensus 224 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~--- 290 (426)
T d1hzua2 224 AANNSNKVAVIDSKDRRLSALVDVGKTPHPG----------RGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQ--- 290 (426)
T ss_dssp EETTCSEEEEEETTTTEEEEEEECSSCCCCS----------CCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTT---
T ss_pred eeecccceeeeecccccEEEEeccCCccccc----------ceeeeecCCCCceEEeccCCCceEEEeecccccccc---
Confidence 5544442233333333332221110000000 11122222 23445566778899999876551000
Q ss_pred ccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEE-------eccCcceeEEEeccc
Q 037120 424 DYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIV-------AGTKNSSLLVVSQKQ 479 (489)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~-------sgs~dg~i~v~~~~~ 479 (489)
..-+....+. +|...|..++|||++.+|+ +++.|++|+||..+.
T Consensus 291 ~~~~~~~~l~------------g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t 341 (426)
T d1hzua2 291 YAWKKVAELQ------------GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKN 341 (426)
T ss_dssp TBTSEEEEEE------------CSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTC
T ss_pred ccceEeEEEe------------cCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCC
Confidence 0002233344 8999999999999999999 577899999998654
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.82 E-value=3.2e-19 Score=166.14 Aligned_cols=297 Identities=10% Similarity=0.007 Sum_probs=171.0
Q ss_pred cEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEecc
Q 037120 109 IYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGY 188 (489)
Q Consensus 109 ~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~ 188 (489)
+||++++.|+.|+|||+.+.+..... ....+... +.+++|+|+++.++++++.+ +.|.+||+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i------------~~~~~~~~---~~~i~~spDg~~l~v~~~~~-~~v~v~D~~t 65 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVI------------TIADAGPT---PMVPMVAPGGRIAYATVNKS-ESLVKIDLVT 65 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEE------------ECTTCTTC---CCCEEECTTSSEEEEEETTT-TEEEEEETTT
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEE------------ECCCCCCC---ccEEEECCCCCEEEEEECCC-CeEEEEECCC
Confidence 58999999999999999996655421 00111122 56699999998677777777 9999999954
Q ss_pred CCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe------------CCCcEEEEECCCCCcCceeeccCCC
Q 037120 189 ISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD------------THGVVNIWDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s------------~dg~i~iwd~~~~~~~~~~~~~~h~ 256 (489)
+ +.+.... ......+...+..++|+|+++ .++++. .++.+.+||..+++ ....+. +.
T Consensus 66 ~-----~~~~~~~--~~~~~~~~~~~~~v~~s~dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~-~~ 134 (337)
T d1pbyb_ 66 G-----ETLGRID--LSTPEERVKSLFGAALSPDGK-TLAIYESPVRLELTHFEVQPTRVALYDAETLS--RRKAFE-AP 134 (337)
T ss_dssp C-----CEEEEEE--CCBTTEEEECTTCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEETTTTE--EEEEEE-CC
T ss_pred C-----cEEEEEe--cCCCcccccceeeEEEcCCCc-EEEEeecCCcceeeeccccccceeeccccCCe--EEEecc-cc
Confidence 3 2221111 001122344567899999999 666665 46788999999876 444443 34
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEe
Q 037120 257 GTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDL 336 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~ 336 (489)
..+..++|+|+|+++++++.+ +.+||..+++....+..+... ....+.+++..+.......... .......
T Consensus 135 ~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 205 (337)
T d1pbyb_ 135 RQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWE-----AETYAQPDVLAVWNQHESSGVM--ATPFYTA 205 (337)
T ss_dssp SSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTT-----TTTBCCCBCCCCCCCCTTTTEE--EEEEEEE
T ss_pred CCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCcc-----ccceecCCcceeecccccccee--eeeeeee
Confidence 668899999999999998754 678999998876666543321 1223344443321100000000 0000000
Q ss_pred CCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCC
Q 037120 337 DPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPG 416 (489)
Q Consensus 337 ~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~ 416 (489)
..+.........+. ...+++...+...... +.... .......+.+++. ++.+ .++.|++||+.++
T Consensus 206 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~------~~~~~~~~~~~~~-~~~~--~~~~i~v~d~~~~ 270 (337)
T d1pbyb_ 206 RKDIDPADPTAYRT-GLLTMDLETGEMAMRE-----VRIMD------VFYFSTAVNPAKT-RAFG--AYNVLESFDLEKN 270 (337)
T ss_dssp BTTSCTTSGGGEEE-EEEEEETTTCCEEEEE-----EEECS------SCEEEEEECTTSS-EEEE--EESEEEEEETTTT
T ss_pred eeccceeeecccCc-cEEEEEcCCCcEEEEE-----ecCCC------cceEEEEecccce-EEEE--ccccEEEEECCCC
Confidence 00000000000000 0011111111111100 00000 0001122333333 4444 3689999999998
Q ss_pred CCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 417 SSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
+.+..+. +...+.+++|+|+++.|++++.||.|.||..+.
T Consensus 271 ----------~~~~~~~-------------~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t 310 (337)
T d1pbyb_ 271 ----------ASIKRVP-------------LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET 310 (337)
T ss_dssp ----------EEEEEEE-------------CSSCCCEEEECTTSCEEEEESBSSEEEEEETTT
T ss_pred ----------cEEEEEc-------------CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 6665544 667789999999999999999999999998764
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=2.9e-18 Score=155.68 Aligned_cols=228 Identities=17% Similarity=0.222 Sum_probs=147.3
Q ss_pred CceeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCc
Q 037120 156 QQLDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGV 235 (489)
Q Consensus 156 ~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~ 235 (489)
.+|+|++| ++ .+|++|+.| |+|+|||+... + ...++.+|...|++++| +++ +|++|+.|+.
T Consensus 16 ~~V~c~~~--d~-~~l~sgs~D-g~i~vWd~~~~-----~-------~~~~l~~H~~~V~~v~~--~~~-~l~s~s~D~~ 76 (293)
T d1p22a2 16 KGVYCLQY--DD-QKIVSGLRD-NTIKIWDKNTL-----E-------CKRILTGHTGSVLCLQY--DER-VIITGSSDST 76 (293)
T ss_dssp CCEEEEEC--CS-SEEEEEESS-SCEEEEESSSC-----C-------EEEEECCCSSCEEEEEC--CSS-EEEEEETTSC
T ss_pred CCEEEEEE--cC-CEEEEEeCC-CeEEEEECCCC-----c-------EEEEEecCCCCEeeeec--ccc-eeeccccccc
Confidence 33998876 44 489999988 99999999322 1 22234889999999987 466 9999999999
Q ss_pred EEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc---cceeecCCccCCCCeeEEEeCC
Q 037120 236 VNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT---SAPFHNHKEVCHLPLTSLKLAS 312 (489)
Q Consensus 236 i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~---~~~~~~~~~~~~~~v~~l~~~~ 312 (489)
|++|++..+. .......+ ......+.+....++++..++.+++||..+... ...+..|... +..+.+.+
T Consensus 77 i~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~~~ 148 (293)
T d1p22a2 77 VRVWDVNTGE--MLNTLIHH--CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA----VNVVDFDD 148 (293)
T ss_dssp EEEEESSSCC--EEEEECCC--CSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSC----EEEEEEET
T ss_pred cccccccccc--cccccccc--ccccccccccccceeecccccceeEeeccccccccccccccccccc----cccceecc
Confidence 9999999876 33233222 233445667778889999999999999988654 3333445444 66665544
Q ss_pred CCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceee
Q 037120 313 MLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWL 392 (489)
Q Consensus 313 ~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (489)
......+ .+ +...+++...+........ .. ..+...
T Consensus 149 ~~~~~~s----------------------------~d-~~i~~~d~~~~~~~~~~~~------~~---------~~v~~~ 184 (293)
T d1p22a2 149 KYIVSAS----------------------------GD-RTIKVWNTSTCEFVRTLNG------HK---------RGIACL 184 (293)
T ss_dssp TEEEEEE----------------------------TT-SEEEEEETTTCCEEEEEEC------CS---------SCEEEE
T ss_pred ccccccc----------------------------CC-CceeeecCCCCcEEEEEcc------cc---------cccccc
Confidence 3222111 11 1011111111111110000 00 001111
Q ss_pred cCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCccee
Q 037120 393 STNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSL 472 (489)
Q Consensus 393 ~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i 472 (489)
+..+.++++|+.|+.|++||+.+. ..+.... +|...|.. +.+++..|++|+.||.|
T Consensus 185 ~~~~~~l~~~~~dg~i~i~d~~~~----------~~~~~~~------------~~~~~v~~--~~~~~~~l~sg~~dg~i 240 (293)
T d1p22a2 185 QYRDRLVVSGSSDNTIRLWDIECG----------ACLRVLE------------GHEELVRC--IRFDNKRIVSGAYDGKI 240 (293)
T ss_dssp EEETTEEEEEETTSCEEEEETTTC----------CEEEEEC------------CCSSCEEE--EECCSSEEEEEETTSCE
T ss_pred cCCCCeEEEecCCCEEEEEecccc----------eeeeeec------------ccceeeee--ccccceEEEEEcCCCEE
Confidence 112557889999999999999988 6666666 78888875 45577899999999999
Q ss_pred EEEecc
Q 037120 473 LVVSQK 478 (489)
Q Consensus 473 ~v~~~~ 478 (489)
.||...
T Consensus 241 ~iwd~~ 246 (293)
T d1p22a2 241 KVWDLV 246 (293)
T ss_dssp EEEEHH
T ss_pred EEEECC
Confidence 999643
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.82 E-value=1.4e-19 Score=169.23 Aligned_cols=308 Identities=10% Similarity=0.008 Sum_probs=177.4
Q ss_pred EEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEE
Q 037120 102 LDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVV 181 (489)
Q Consensus 102 ~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i 181 (489)
++|++++++|++++.|+.|.|||+.+.+.... .. ..|... +.+++|+||++.+++++..+ +.|
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t--------~~-----~~~~~~---p~~l~~spDG~~l~v~~~~~-~~v 64 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKS--------CV-----MPDKFG---PGTAMMAPDNRTAYVLNNHY-GDI 64 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEETTTTEEEEE--------EE-----CSSCCS---SCEEEECTTSSEEEEEETTT-TEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEE--------EE-----cCCCCC---cceEEECCCCCEEEEEECCC-CcE
Confidence 47899999999999999999999999655441 10 112222 66799999998777777777 999
Q ss_pred EEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe------------CCCcEEEEECCCCCcC-c
Q 037120 182 SIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD------------THGVVNIWDRRVGVLP-S 248 (489)
Q Consensus 182 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s------------~dg~i~iwd~~~~~~~-~ 248 (489)
.+||+... +.+..... ......+...+..++|+|||+ +++.++ .++.+.+||..+++.. .
T Consensus 65 ~~~d~~t~-----~~~~~~~~-~~~~~~~~~~~~~v~~s~DG~-~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 137 (346)
T d1jmxb_ 65 YGIDLDTC-----KNTFHANL-SSVPGEVGRSMYSFAISPDGK-EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKP 137 (346)
T ss_dssp EEEETTTT-----EEEEEEES-CCSTTEEEECSSCEEECTTSS-EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCC
T ss_pred EEEeCccC-----eeeeeecc-cccccccCCceEEEEEecCCC-EEEEEecCCcceeeeeccCcceEEEEecccceeeeE
Confidence 99999432 22221110 000122334567899999999 665554 4778999998876532 1
Q ss_pred eeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeec
Q 037120 249 LELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVS 328 (489)
Q Consensus 249 ~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~ 328 (489)
+... .....+..+.+++++..+++ + +.+.+||+.+++.+..+..+. . ...+.++|++..+...........
T Consensus 138 ~~~~-~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~ 208 (346)
T d1jmxb_ 138 VRTF-PMPRQVYLMRAADDGSLYVA-G--PDIYKMDVKTGKYTVALPLRN-W----NRKGYSAPDVLYFWPHQSPRHEFS 208 (346)
T ss_dssp SEEE-ECCSSCCCEEECTTSCEEEE-S--SSEEEECTTTCCEEEEECSTT-C----CCTTBCCCBCCCCCCCCCTTCEEE
T ss_pred EEee-eccCceEEEEecCCCEEEEe-C--CcceEEEccCCCEEEEEecCC-C----ccceEEeccccEEEEEecCCCceE
Confidence 1111 12344566777777765543 2 468999999988877776543 2 455667777765532111111100
Q ss_pred cceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcE
Q 037120 329 QEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGI 408 (489)
Q Consensus 329 ~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i 408 (489)
.......+.+....+........ ...++...+....... .... .......+.+++..++.. .++.|
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~------~~~~~~~~~~~~~~~~~~--~~~~v 274 (346)
T d1jmxb_ 209 MLYTIARFKDDKQDPATADLLYG-YLSVDLKTGKTHTQEF-----ADLT------ELYFTGLRSPKDPNQIYG--VLNRL 274 (346)
T ss_dssp EEEEEEEC-------CCCEEEEE-EEEEETTTCCEEEEEE-----EECS------SCEEEEEECSSCTTEEEE--EESEE
T ss_pred eeeeeeeeccCceeEeeccCCce-EEEEECCCCceEEEEe-----eccc------ceeEEEEEeCCCCEEEEe--cCCeE
Confidence 00011111111111110000000 0111221111111000 0000 011123444555555444 34679
Q ss_pred EEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEEeccc
Q 037120 409 HLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQ 479 (489)
Q Consensus 409 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~ 479 (489)
++||..++ +.+..+. +...+.+++|+|+++.+++++.||.|.||..+.
T Consensus 275 ~v~d~~~~----------~~~~~~~-------------~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t 322 (346)
T d1jmxb_ 275 AKYDLKQR----------KLIKAAN-------------LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT 322 (346)
T ss_dssp EEEETTTT----------EEEEEEE-------------CSSCCCEEEECSSSSCEEEESBSSEEEEEETTT
T ss_pred EEEECCCC----------cEEEEEc-------------CCCCEEEEEEcCCCCEEEEEeCCCcEEEEECcc
Confidence 99999988 6665544 455799999999999999999999999998764
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.79 E-value=2.3e-17 Score=159.39 Aligned_cols=180 Identities=11% Similarity=0.035 Sum_probs=124.9
Q ss_pred CCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEE
Q 037120 105 DCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIY 184 (489)
Q Consensus 105 s~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vw 184 (489)
+++.-++++.+.||+|.|||..+.+.... + ..+. . +..++|+||++ .+++++.| ++|++|
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~--------~------~~g~-~---~~~v~fSpDG~-~l~~~s~d-g~v~~~ 88 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGSTYEIKTV--------L------DTGY-A---VHISRLSASGR-YLFVIGRD-GKVNMI 88 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEE--------E------ECSS-C---EEEEEECTTSC-EEEEEETT-SEEEEE
T ss_pred CCCcEEEEEEcCCCEEEEEECCCCcEEEE--------E------eCCC-C---eeEEEECCCCC-EEEEEcCC-CCEEEE
Confidence 44444568899999999999999666552 1 1121 2 88899999997 55667777 999999
Q ss_pred EeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc-----------
Q 037120 185 DIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST----------- 253 (489)
Q Consensus 185 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~----------- 253 (489)
|+...... ...... .+.+|...+.+..|+|||+.++++++.+++|++||..+++ ++..+.
T Consensus 89 d~~t~~~~---~~~~i~----~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~--~~~~~~~~~~~~~~~~~ 159 (432)
T d1qksa2 89 DLWMKEPT---TVAEIK----IGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLE--PKKIQSTRGMTYDEQEY 159 (432)
T ss_dssp ETTSSSCC---EEEEEE----CCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCC--EEEEEECCEECTTTCCE
T ss_pred EeeCCCce---EEEEEe----cCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCcccc--ceeeeccCCccccceec
Confidence 99544322 111111 2255677788888999999456788899999999999876 333332
Q ss_pred CCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcccceee-cCCccCCCCeeEEEeCCCCcce
Q 037120 254 GSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFH-NHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 254 ~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~-~~~~~~~~~v~~l~~~~~~~~i 317 (489)
.+......+.++|++..++.+.. ++.|.+||..+++...... .+... +..++|+|+|+++
T Consensus 160 ~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~----~~~~~~spdg~~~ 221 (432)
T d1qksa2 160 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERF----LHDGGLDGSHRYF 221 (432)
T ss_dssp ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSS----EEEEEECTTSCEE
T ss_pred cCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCc----cccceECCCCCEE
Confidence 23455668899999998766544 8999999998876533322 12333 6677777777655
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.77 E-value=1.2e-16 Score=146.05 Aligned_cols=241 Identities=10% Similarity=0.027 Sum_probs=159.3
Q ss_pred CceeEEEECCCCcEE-EEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 97 PGISALDFDCKGIYL-VSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 97 ~~V~~~~fs~~g~~l-a~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
..+..++|+|||++| ++++.++.|++||+.+.+.... + ..+. .+..++|++++..+++++.
T Consensus 32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~--------~------~~~~----~~~~~~~~~~~~~~~~~~~ 93 (301)
T d1l0qa2 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT--------V------PAGS----SPQGVAVSPDGKQVYVTNM 93 (301)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE--------E------ECSS----SEEEEEECTTSSEEEEEET
T ss_pred CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee--------e------eccc----ccccccccccccccccccc
Confidence 347889999999987 5667799999999998555441 1 1121 1677999999986777766
Q ss_pred cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCC
Q 037120 176 TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGS 255 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h 255 (489)
.+ +.+.+|+.... ..... ..+......+.|+|++..+++++..++.+.+|+..+.. ..... .+
T Consensus 94 ~~-~~~~~~~~~~~-----~~~~~--------~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~ 156 (301)
T d1l0qa2 94 AS-STLSVIDTTSN-----TVAGT--------VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA--VINTV-SV 156 (301)
T ss_dssp TT-TEEEEEETTTT-----EEEEE--------EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--EEEEE-EC
T ss_pred cc-ceeeecccccc-----eeeee--------ccccccceEEEeecCCCeeeeeeccccceeeeeccccc--eeeec-cc
Confidence 66 99999998332 22211 12334678899999999556677788999999999875 44333 33
Q ss_pred CCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEE
Q 037120 256 HGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSI 334 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~ 334 (489)
...+..++++|++..+++++. ++.+.+|+....+....+..+ .. ...++|++++..
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~g~~------------------ 213 (301)
T d1l0qa2 157 GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AA----PSGIAVNPEGTK------------------ 213 (301)
T ss_dssp CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SE----EEEEEECTTSSE------------------
T ss_pred CCCceEEEeeccccceeeecccccccccccccceeeeeccccc-CC----cceeeccccccc------------------
Confidence 456789999999999988877 577888888776554444432 22 445555555543
Q ss_pred EeCCCCCeEEEEEecCC--ceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEe
Q 037120 335 DLDPSCSYQLAFHLDDG--WSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLD 412 (489)
Q Consensus 335 ~~~p~~~~~~~~~~~~~--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd 412 (489)
++....+.. -..+++..++........ . .....++|+|+|..++++++.|+.|++||
T Consensus 214 --------~~v~~~~~~~~~v~v~D~~t~~~~~~~~~------~-------~~~~~va~spdg~~l~va~~~~~~i~v~D 272 (301)
T d1l0qa2 214 --------AYVTNVDKYFNTVSMIDTGTNKITARIPV------G-------PDPAGIAVTPDGKKVYVALSFCNTVSVID 272 (301)
T ss_dssp --------EEEEEECSSCCEEEEEETTTTEEEEEEEC------C-------SSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred --------cccccccceeeeeeeeecCCCeEEEEEcC------C-------CCEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence 333322221 112333333322221100 0 01234678888888888999999999999
Q ss_pred ccCC
Q 037120 413 FFPG 416 (489)
Q Consensus 413 ~~~~ 416 (489)
+.++
T Consensus 273 ~~t~ 276 (301)
T d1l0qa2 273 TATN 276 (301)
T ss_dssp TTTT
T ss_pred CCCC
Confidence 9998
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=6.3e-17 Score=150.28 Aligned_cols=291 Identities=9% Similarity=0.034 Sum_probs=168.9
Q ss_pred EEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEEEEEEeccC
Q 037120 110 YLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVVSIYDIGYI 189 (489)
Q Consensus 110 ~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~ 189 (489)
.+++++.|++|+||+++...... ......|... |..++|+|+++.+++++..| +.|.+|++...
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~------------~~~~~~~~~~---v~~la~spDG~~L~v~~~~d-~~i~~~~i~~~ 69 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALT------------LTQVVDVPGQ---VQPMVVSPDKRYLYVGVRPE-FRVLAYRIAPD 69 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEE------------EEEEEECSSC---CCCEEECTTSSEEEEEETTT-TEEEEEEECTT
T ss_pred EEEECCCCCcEEEEEEcCCCCeE------------EEEEEcCCCC---EeEEEEeCCCCEEEEEECCC-CeEEEEEEeCC
Confidence 45778899999999997632211 0111223444 77799999998666666656 99999999543
Q ss_pred CCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecC
Q 037120 190 SDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAEN 268 (489)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 268 (489)
... +..... ..+...+..++|+|+|+ +|++++ .++.|.+|+..............+...+.++.++|++
T Consensus 70 ~~~----~~~~~~-----~~~~~~p~~l~~spDg~-~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~ 139 (333)
T d1ri6a_ 70 DGA----LTFAAE-----SALPGSLTHISTDHQGQ-FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN 139 (333)
T ss_dssp TCC----EEEEEE-----EECSSCCSEEEECTTSS-EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS
T ss_pred CCc----EEEeee-----cccCCCceEEEEcCCCC-EEeecccCCCceeeeccccccceecccccCCCccceEEEeeecc
Confidence 222 111110 12334677899999999 666666 5778999988765422222333566778899999999
Q ss_pred CEEEEEeC-CCeEEEEEcCCCcccceeecC--CccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEE
Q 037120 269 QIIFAAGK-HGSIYLWDLRGGRTSAPFHNH--KEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLA 345 (489)
Q Consensus 269 ~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~--~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~ 345 (489)
+++++++. +..|.+|+............. ..........++|++++..+ +.
T Consensus 140 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~--------------------------~~ 193 (333)
T d1ri6a_ 140 RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYA--------------------------YC 193 (333)
T ss_dssp SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEE--------------------------EE
T ss_pred eeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeE--------------------------Ee
Confidence 99998876 778999998875432211100 00000113455555555443 22
Q ss_pred EEecCCceEEEEeec--cce---eeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCC
Q 037120 346 FHLDDGWSGVLDVYN--SRV---SHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSP 420 (489)
Q Consensus 346 ~~~~~~w~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~ 420 (489)
.........+..... ... ..+...+...... .......+.+++..+++++..++.+.+|++...
T Consensus 194 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~---- 262 (333)
T d1ri6a_ 194 VNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDT-------RWAADIHITPDGRHLYACDRTASLITVFSVSED---- 262 (333)
T ss_dssp EETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSC-------CCEEEEEECTTSSEEEEEETTTTEEEEEEECTT----
T ss_pred eccccCceEEEeecccccceeeeeeeeeeecCCCcc-------ccceeEEEecccCceeeecccCCeEEEEEEcCC----
Confidence 222211111111000 000 0000000000000 111224567778888888889999999998765
Q ss_pred eeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEe-ccCcceeEEEecc
Q 037120 421 SHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVA-GTKNSSLLVVSQK 478 (489)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~s-gs~dg~i~v~~~~ 478 (489)
....... ........+.+++|+|+|++|++ ++.++.|.||...
T Consensus 263 ------~~~~~~~---------~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id 306 (333)
T d1ri6a_ 263 ------GSVLSKE---------GFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 306 (333)
T ss_dssp ------SCCEEEE---------EEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred ------CCEEEEE---------EEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEE
Confidence 2222211 00134456788999999997555 5567899998543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.66 E-value=5.6e-14 Score=132.42 Aligned_cols=303 Identities=10% Similarity=-0.060 Sum_probs=168.2
Q ss_pred CCCceeEEEECCCCcEEEEEe-----cCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCC
Q 037120 95 GKPGISALDFDCKGIYLVSAT-----RSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQD 169 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~-----~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~ 169 (489)
+...+.+++++|||+.++... .++.|.|||..+.+.... + ..+ . ...++|+|+++.
T Consensus 19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~--------~------~~~--~---~~~~a~SpDG~~ 79 (373)
T d2madh_ 19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH--------V------NGG--F---LPNPVAAHSGSE 79 (373)
T ss_pred CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE--------E------eCC--C---CccEEEcCCCCE
Confidence 445588999999999887653 346799999888554431 1 111 1 224899999986
Q ss_pred EEEEE---------ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEE--eCCCcEEE
Q 037120 170 EVACA---------STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIAS--DTHGVVNI 238 (489)
Q Consensus 170 ~l~s~---------~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~--s~dg~i~i 238 (489)
++++. ..+ +.|.+||....... ..+......... -......+.|+++++ .++.. ..++.+.+
T Consensus 80 l~va~~~~~~~~~~~~~-~~v~v~D~~t~~~~--~~~~~~~~~~~~---~~~~~~~~~~s~dg~-~~~v~~~~~~~~~~~ 152 (373)
T d2madh_ 80 FALASTSFSRIAKGKRT-DYVEVFDPVTFLPI--ADIELPDAPRFD---VGPYSWMNANTPNNA-DLLFFQFAAGPAVGL 152 (373)
T ss_pred EEEEeecCCcccccccc-eEEEEEECCCCcEE--EEEecCCcceeE---eccCCCcEEEEeCCC-cEEEEEEcCCCceEE
Confidence 55543 233 78999999543211 111100000000 001224578999998 44333 45678899
Q ss_pred EECCCCCcCceeeccCCCCceeEEEEeecCCEEEE-EeCCCeEEEEEcCCCcccceeecCCccC--CCCeeEEEeCCCCc
Q 037120 239 WDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFA-AGKHGSIYLWDLRGGRTSAPFHNHKEVC--HLPLTSLKLASMLE 315 (489)
Q Consensus 239 wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~-~~~dg~i~lwd~~~~~~~~~~~~~~~~~--~~~v~~l~~~~~~~ 315 (489)
|+....+ .. .+.....++.++|+++.+++ .+.|+.+.+||...++.......+.... ......+.+.+++.
T Consensus 153 ~~~~~~~--~~----~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (373)
T d2madh_ 153 VVQGGSS--DD----QLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR 226 (373)
T ss_pred eeccCCe--EE----EEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce
Confidence 9988754 22 22345678999999987754 5669999999999877654443222110 01123334444443
Q ss_pred ceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccc---eeeecCC-----CCCCcCCCCccccccCCC
Q 037120 316 KIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSR---VSHVHCP-----PPAWLSDSNNSADQLHLR 387 (489)
Q Consensus 316 ~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~---~~~~~~~-----~~~~~~~~~~~~~~~~~~ 387 (489)
.+.. ..+..+................... ....... ...+..+. .
T Consensus 227 ~~~~------------------~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---------~ 279 (373)
T d2madh_ 227 IVWP------------------VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSS---------D 279 (373)
T ss_pred EEEe------------------cCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCC---------C
Confidence 3321 1111111111111100011111110 0000000 00111110 1
Q ss_pred cceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCC--eEEe
Q 037120 388 KPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN--TIVA 465 (489)
Q Consensus 388 ~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~--~i~s 465 (489)
...+....+..++....++.+.+||..++ +.+..+. +...+.+++|+|+++ ++++
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~v~~~d~~t~----------~~~~~~~-------------~~~~~~~~a~spDG~~~l~vt 336 (373)
T d2madh_ 280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVG----------QTSSQIS-------------LGHDVDAISVAQDGGPDLYAL 336 (373)
T ss_pred eEEEecCCCceEEeecCCCeEEEEECCCC----------cEEEEec-------------CCCCeeEEEECCCCCEEEEEE
Confidence 11222233455566778889999999988 6665544 667789999999998 4678
Q ss_pred ccCcceeEEEeccc
Q 037120 466 GTKNSSLLVVSQKQ 479 (489)
Q Consensus 466 gs~dg~i~v~~~~~ 479 (489)
++.|+.|.||..+.
T Consensus 337 ~~~d~~v~v~D~~t 350 (373)
T d2madh_ 337 SAGTEVLHIYDAGA 350 (373)
T ss_pred eCCCCeEEEEECCC
Confidence 99999999997654
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=1.2e-13 Score=127.74 Aligned_cols=266 Identities=11% Similarity=0.040 Sum_probs=151.1
Q ss_pred cCCCceeEEEECCCCcEEEEEe-cCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 94 FGKPGISALDFDCKGIYLVSAT-RSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~-~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
.+...|..|+|+|||++|++++ .|+.|++|++....... ....+......+..++|+|+++.+++
T Consensus 34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~--------------~~~~~~~~~~~p~~l~~spDg~~l~v 99 (333)
T d1ri6a_ 34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL--------------TFAAESALPGSLTHISTDHQGQFVFV 99 (333)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE--------------EEEEEEECSSCCSEEEECTTSSEEEE
T ss_pred cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcE--------------EEeeecccCCCceEEEEcCCCCEEee
Confidence 3456699999999999985555 58999999987632211 11122112222667999999975554
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCCcEEEEECCCCCcCcee-
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THGVVNIWDRRVGVLPSLE- 250 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~- 250 (489)
++.+++.|.+|+.... ....... ...+...+.++.++|+++ .++.++ .+..|.+|+..........
T Consensus 100 -~~~~~~~v~~~~~~~~-----~~~~~~~-----~~~~~~~~~~v~~s~d~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~ 167 (333)
T d1ri6a_ 100 -GSYNAGNVSVTRLEDG-----LPVGVVD-----VVEGLDGCHSANISPDNR-TLWVPALKQDRICLFTVSDDGHLVAQD 167 (333)
T ss_dssp -EETTTTEEEEEEEETT-----EEEEEEE-----EECCCTTBCCCEECTTSS-EEEEEEGGGTEEEEEEECTTSCEEEEE
T ss_pred -cccCCCceeeeccccc-----cceeccc-----ccCCCccceEEEeeecce-eeeccccccceeeEEEeccCCcceeee
Confidence 4444489999998322 1111111 144566788899999999 555555 6678999998775422111
Q ss_pred ---eccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceeecccccee
Q 037120 251 ---LSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKI 326 (489)
Q Consensus 251 ---~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~ 326 (489)
...........++|++++..++.... .+...+|+.......... ...+...+.+ ..
T Consensus 168 ~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----------~~~~~~~~~~----------~~ 227 (333)
T d1ri6a_ 168 PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC----------VQTLDMMPEN----------FS 227 (333)
T ss_dssp EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE----------EEEEECSCTT----------CC
T ss_pred ceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceee----------eeeeeeeecC----------CC
Confidence 11133455678999999999887765 778888887643221100 0111111110 00
Q ss_pred eccceeEEEeCCCCCeEEEEEecCCceEEEEeecc-ceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCC
Q 037120 327 VSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNS-RVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSD 405 (489)
Q Consensus 327 ~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d 405 (489)
.......+.+++++++++.......-..++..... ........ .... ...+.++|+|+|..++++++.+
T Consensus 228 ~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------~~p~~~a~spDGk~l~va~~~~ 297 (333)
T d1ri6a_ 228 DTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF---QPTE-------TQPRGFNVDHSGKYLIAAGQKS 297 (333)
T ss_dssp SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE---EECS-------SSCCCEEECTTSSEEEEECTTT
T ss_pred ccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEE---eCCC-------CCeeEEEEeCCCCEEEEEECCC
Confidence 11122344556666655544433331222222111 00000000 0000 1124578899988888888888
Q ss_pred CcEEEEeccC
Q 037120 406 HGIHLLDFFP 415 (489)
Q Consensus 406 ~~i~vwd~~~ 415 (489)
+.|+||++..
T Consensus 298 ~~v~v~~id~ 307 (333)
T d1ri6a_ 298 HHISVYEIVG 307 (333)
T ss_dssp CEEEEEEEET
T ss_pred CeEEEEEEEC
Confidence 9999997643
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.57 E-value=2.5e-14 Score=133.75 Aligned_cols=270 Identities=10% Similarity=0.004 Sum_probs=154.5
Q ss_pred eEEEECCCCcEEEEE----------ecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCC
Q 037120 100 SALDFDCKGIYLVSA----------TRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQD 169 (489)
Q Consensus 100 ~~~~fs~~g~~la~g----------~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~ 169 (489)
..++|||||++|++. ..|+.|++||..+.+...... .+.......... ...++|+|++..
T Consensus 50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~-------~~~~~~~~~~~~---~~~~~~s~dg~~ 119 (355)
T d2bbkh_ 50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIE-------LPDAPRFLVGTY---PWMTSLTPDGKT 119 (355)
T ss_dssp CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEE-------ETTCCCCCBSCC---GGGEEECTTSSE
T ss_pred CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEe-------cCCcceeecCCC---CceEEEecCCCe
Confidence 368999999988764 447899999999865544210 000000011112 344899999986
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
+++.....+..+.+||.... ..+............-......+.+++++..+++....++.+.+++.....
T Consensus 120 ~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~---- 190 (355)
T d2bbkh_ 120 LLFYQFSPAPAVGVVDLEGK-----AFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH---- 190 (355)
T ss_dssp EEEEECSSSCEEEEEETTTT-----EEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS----
T ss_pred eEEecCCCCceeeeeecCCC-----cEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccccc----
Confidence 66554333479999999433 222211100000000012334456666666333334455556666554432
Q ss_pred eeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc--cceeecCCccCCCCeeEEEeCCCCcceeeccccceee
Q 037120 250 ELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT--SAPFHNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIV 327 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~ 327 (489)
..+...+....+.+++..++.++.++.+++|++..++. +.....+... ...+.+.|.
T Consensus 191 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~~~~~~~p~-------------- 249 (355)
T d2bbkh_ 191 ---PEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEA----ERADGWRPG-------------- 249 (355)
T ss_dssp ---CTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHH----HHHTTEEEC--------------
T ss_pred ---ceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccc----eEeeeeecc--------------
Confidence 12334456677888888999999999999999988654 2222222211 111111111
Q ss_pred ccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCc
Q 037120 328 SQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHG 407 (489)
Q Consensus 328 ~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~ 407 (489)
....+.+++++..++....+.. . .+....++.
T Consensus 250 --~~~~~~~~~d~~~~~~~~~~~~--------------------~--------------------------~~~~~~~~~ 281 (355)
T d2bbkh_ 250 --GWQQVAYHRALDRIYLLVDQRD--------------------E--------------------------WRHKTASRF 281 (355)
T ss_dssp --SSSCEEEETTTTEEEEEEEECC--------------------T--------------------------TCTTSCEEE
T ss_pred --ceEEEEEeCCCCeEEEEeccCC--------------------c--------------------------eeecCCCCe
Confidence 1223456666665554332211 0 001123457
Q ss_pred EEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCC--eEEeccCcceeEEEecccc
Q 037120 408 IHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN--TIVAGTKNSSLLVVSQKQQ 480 (489)
Q Consensus 408 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~--~i~sgs~dg~i~v~~~~~~ 480 (489)
|.+||..++ +.+..+. +...+.+++|+|+++ .+++++.|+.|.||..+..
T Consensus 282 v~v~d~~t~----------~~~~~~~-------------~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg 333 (355)
T d2bbkh_ 282 VVVLDAKTG----------ERLAKFE-------------MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG 333 (355)
T ss_dssp EEEEETTTC----------CEEEEEE-------------EEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred EEEEeCCCC----------cEEEEec-------------CCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC
Confidence 899999988 6665554 445689999999997 5678889999999976543
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.55 E-value=4.4e-12 Score=119.10 Aligned_cols=273 Identities=11% Similarity=-0.038 Sum_probs=161.0
Q ss_pred EEEECCCCcEEEEEe----------cCCeEEEEeCCCcccccCCCCCCCCCcccccccccC-CCCCCceeEEEeeCCCCC
Q 037120 101 ALDFDCKGIYLVSAT----------RSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLH-IPLPQQLDAVRWNLANQD 169 (489)
Q Consensus 101 ~~~fs~~g~~la~g~----------~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h-~~~~~~V~~v~~~~~~~~ 169 (489)
.++|+|||++|++++ .++.|.|||..+.+...... ........ ... ...+.|++++..
T Consensus 70 ~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~--------~~~~~~~~~~~~---~~~~~~s~dg~~ 138 (373)
T d2madh_ 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIE--------LPDAPRFDVGPY---SWMNANTPNNAD 138 (373)
T ss_pred cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEe--------cCCcceeEeccC---CCcEEEEeCCCc
Confidence 689999999998875 46789999999866544210 00000000 011 234889999876
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
+++.....++.+.+|+.... .. ..+.....++.++|+++..+++.+.|+.+.+||...++..
T Consensus 139 ~~v~~~~~~~~~~~~~~~~~-----~~-----------~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~-- 200 (373)
T d2madh_ 139 LLFFQFAAGPAVGLVVQGGS-----SD-----------DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAG-- 200 (373)
T ss_pred EEEEEEcCCCceEEeeccCC-----eE-----------EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceee--
Confidence 66655433378888988321 11 1123356778999999877889999999999999876522
Q ss_pred eecc------CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcc--cceeecCCccCCCCeeEEEeCCCCcceeecc
Q 037120 250 ELST------GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRT--SAPFHNHKEVCHLPLTSLKLASMLEKIGTLK 321 (489)
Q Consensus 250 ~~~~------~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~--~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~ 321 (489)
.... ........+.+.+++.+ +..+.++.+.+|+..++.. +..+..+... .....+.|.+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~------ 269 (373)
T d2madh_ 201 AGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAGATNKAPIDALSGG----RKADTWRPGGW------ 269 (373)
T ss_pred EEEeeeccccCccceeeeEEECCCceE-EEecCCceEEEEEcCCCeEEEEEeeccccCc----EEeeeeccCcc------
Confidence 2211 11222334555665544 5556789999999988654 2222222222 33333333322
Q ss_pred ccceeeccceeEEEeCCCCCeEEEEEecCC---------ceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceee
Q 037120 322 AQSKIVSQEIHSIDLDPSCSYQLAFHLDDG---------WSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWL 392 (489)
Q Consensus 322 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~---------w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 392 (489)
..+.+++++..++....++. -..+++..++........ . .....+.|+
T Consensus 270 ----------~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~------~-------~~~~~~a~s 326 (373)
T d2madh_ 270 ----------QQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL------G-------HDVDAISVA 326 (373)
T ss_pred ----------eeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecC------C-------CCeeEEEEC
Confidence 12233344433332222211 123444444443332111 0 112346788
Q ss_pred cCCcE-EEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeC
Q 037120 393 STNSI-YAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHP 458 (489)
Q Consensus 393 ~~~~~-~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p 458 (489)
|+|.. ++++++.|+.|+|||+.++ +.+..+. ++....+.+++.+
T Consensus 327 pDG~~~l~vt~~~d~~v~v~D~~tg----------~~~~~~~------------~~g~~P~~l~~~~ 371 (373)
T d2madh_ 327 QDGGPDLYALSAGTEVLHIYDAGAG----------DQDQSTV------------ELGSGPQVLSVMN 371 (373)
T ss_pred CCCCEEEEEEeCCCCeEEEEECCCC----------CEEEEEC------------CCCCCCcEEEEec
Confidence 88865 5678999999999999999 8888877 6666667776654
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.48 E-value=4.4e-13 Score=124.21 Aligned_cols=140 Identities=10% Similarity=0.054 Sum_probs=96.2
Q ss_pred EEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEE
Q 037120 161 VRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWD 240 (489)
Q Consensus 161 v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd 240 (489)
++|+++++ .+++++.+ ++|.+||+... +.+.... ..|...+.+++|+|||+.++++++.++.|++||
T Consensus 2 ~a~~~~~~-~l~~~~~~-~~v~v~D~~t~-----~~~~t~~------~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d 68 (346)
T d1jmxb_ 2 PALKAGHE-YMIVTNYP-NNLHVVDVASD-----TVYKSCV------MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGID 68 (346)
T ss_dssp CCCCTTCE-EEEEEETT-TEEEEEETTTT-----EEEEEEE------CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred ccCCCCCc-EEEEEcCC-CEEEEEECCCC-----CEEEEEE------cCCCCCcceEEECCCCCEEEEEECCCCcEEEEe
Confidence 57888876 67777777 99999999432 3333322 235567889999999994557777899999999
Q ss_pred CCCCCcCceeeccC------CCCceeEEEEeecCCEEEEEe------------CCCeEEEEEcCCCcccceeecCCccCC
Q 037120 241 RRVGVLPSLELSTG------SHGTLNSIQLHAENQIIFAAG------------KHGSIYLWDLRGGRTSAPFHNHKEVCH 302 (489)
Q Consensus 241 ~~~~~~~~~~~~~~------h~~~v~~~~~~p~~~~l~~~~------------~dg~i~lwd~~~~~~~~~~~~~~~~~~ 302 (489)
+.+++ .+..... +...+..++|+|+|+++++++ .++.+.+||..+++....+..+...
T Consensus 69 ~~t~~--~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-- 144 (346)
T d1jmxb_ 69 LDTCK--NTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP-- 144 (346)
T ss_dssp TTTTE--EEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC--
T ss_pred CccCe--eeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeecc--
Confidence 99875 3322221 123456899999999998875 3678999999887765555433221
Q ss_pred CCeeEEEeCCCCcce
Q 037120 303 LPLTSLKLASMLEKI 317 (489)
Q Consensus 303 ~~v~~l~~~~~~~~i 317 (489)
..+..+.+++++..+
T Consensus 145 ~~~~~~~~~~~~~~~ 159 (346)
T d1jmxb_ 145 RQVYLMRAADDGSLY 159 (346)
T ss_dssp SSCCCEEECTTSCEE
T ss_pred CceEEEEecCCCEEE
Confidence 225566666666554
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.47 E-value=3.1e-11 Score=117.26 Aligned_cols=145 Identities=10% Similarity=-0.008 Sum_probs=98.5
Q ss_pred EEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE------
Q 037120 101 ALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA------ 174 (489)
Q Consensus 101 ~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~------ 174 (489)
.+.|.++++++.. .|+.+.+||+.++.... +.....+..|... |.++.|+||++.++++.
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~---------~~~~~~~~~~~~~---i~~~~~SpDg~~i~~~~~~~~~~ 86 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSV---------FLENSTFDEFGHS---INDYSISPDGQFILLEYNYVKQW 86 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEE---------EECTTTTTTSSSC---CCEEEECTTSSEEEEEEEEEECS
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEE---------EEchhhhhhccCc---cceeEECCCCCEEEEEECCccee
Confidence 4578999988764 57889999999865433 1111222334444 88899999998555443
Q ss_pred --ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeec
Q 037120 175 --STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELS 252 (489)
Q Consensus 175 --~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 252 (489)
+.+ +.+.|||+..+. ...+..|...+..+.|+|||+ .++... ++.+++|+..+++. .+..
T Consensus 87 r~s~~-~~~~l~d~~~~~-------------~~~l~~~~~~~~~~~~SPDG~-~ia~~~-~~~l~~~~~~~g~~--~~~t 148 (470)
T d2bgra1 87 RHSYT-ASYDIYDLNKRQ-------------LITEERIPNNTQWVTWSPVGH-KLAYVW-NNDIYVKIEPNLPS--YRIT 148 (470)
T ss_dssp SSCEE-EEEEEEETTTTE-------------ECCSSCCCTTEEEEEECSSTT-CEEEEE-TTEEEEESSTTSCC--EECC
T ss_pred eeccC-ceEEEEECCCCc-------------ccccccCCccccccccccCcc-eeeEee-cccceEEECCCCce--eeee
Confidence 223 678899994321 112356778999999999999 777754 78999999988752 2222
Q ss_pred cC------------------CCCceeEEEEeecCCEEEEEeCC
Q 037120 253 TG------------------SHGTLNSIQLHAENQIIFAAGKH 277 (489)
Q Consensus 253 ~~------------------h~~~v~~~~~~p~~~~l~~~~~d 277 (489)
.. ..+....+.|+|||+.|+....|
T Consensus 149 ~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d 191 (470)
T d2bgra1 149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFN 191 (470)
T ss_dssp SCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEE
T ss_pred eccCCCcccccccceeeeeeecCCccccEECCCCCccceeEec
Confidence 11 12334568899999999988653
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.46 E-value=3e-12 Score=117.97 Aligned_cols=133 Identities=14% Similarity=0.031 Sum_probs=95.1
Q ss_pred CEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCc
Q 037120 169 DEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPS 248 (489)
Q Consensus 169 ~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 248 (489)
..+++++.| ++|.|||+... +.+.... ...+...+.+++|+|||+.++++++.++.|.+||+.+++ .
T Consensus 2 ~~~vt~~~d-~~v~v~D~~s~-----~~~~~i~-----~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~--~ 68 (337)
T d1pbyb_ 2 DYILAPARP-DKLVVIDTEKM-----AVDKVIT-----IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE--T 68 (337)
T ss_dssp EEEEEEETT-TEEEEEETTTT-----EEEEEEE-----CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC--E
T ss_pred eEEEEEcCC-CEEEEEECCCC-----eEEEEEE-----CCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCc--E
Confidence 367888887 99999999322 3333222 133445688999999999444677789999999999987 4
Q ss_pred eeeccCC-----CCceeEEEEeecCCEEEEEeC------------CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeC
Q 037120 249 LELSTGS-----HGTLNSIQLHAENQIIFAAGK------------HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLA 311 (489)
Q Consensus 249 ~~~~~~h-----~~~v~~~~~~p~~~~l~~~~~------------dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~ 311 (489)
+.....+ ...+..++|+|+++++++++. ++.+.+||..+++.+..+..+ .. +..++|+
T Consensus 69 ~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~----~~~~~~s 143 (337)
T d1pbyb_ 69 LGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAP-RQ----ITMLAWA 143 (337)
T ss_dssp EEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECC-SS----CCCEEEC
T ss_pred EEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEecccc-CC----ceEEEEc
Confidence 4333332 234568999999999988863 567889999988877776643 23 6677888
Q ss_pred CCCcceee
Q 037120 312 SMLEKIGT 319 (489)
Q Consensus 312 ~~~~~i~~ 319 (489)
|+|+++..
T Consensus 144 ~dg~~l~~ 151 (337)
T d1pbyb_ 144 RDGSKLYG 151 (337)
T ss_dssp TTSSCEEE
T ss_pred CCCCEEEE
Confidence 88876653
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.29 E-value=5.7e-11 Score=111.35 Aligned_cols=291 Identities=9% Similarity=-0.031 Sum_probs=151.8
Q ss_pred eeEEEECCCCcEE--E-EEecCCe--EEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 99 ISALDFDCKGIYL--V-SATRSGC--LTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 99 V~~~~fs~~g~~l--a-~g~~dg~--i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
...++..++++.. + ....+|. |.+||..+.+.... . .++. ...++|+|++..+.++
T Consensus 22 ~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~--------~------~~~~-----~~~~a~spDg~~i~~~ 82 (368)
T d1mdah_ 22 SCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH--------S------LGAF-----LSLAVAGHSGSDFALA 82 (368)
T ss_dssp CBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE--------E------EECT-----TCEEEECTTSSCEEEE
T ss_pred ccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE--------E------eCCC-----CCcceECCCCCEEEEE
Confidence 4455667777643 2 2334555 55667777443331 0 1111 2248999999866554
Q ss_pred E---------ecCCCEEEEEEeccCCCCCceeeee-ceeeeeecCCcccCeeEEEEecCCCcEEEEE-eCCCcEEEEECC
Q 037120 174 A---------STRSNVVSIYDIGYISDEPVEVLKT-RRSVTVVGSDVQKGLSDLAFSAVNTSRLIAS-DTHGVVNIWDRR 242 (489)
Q Consensus 174 ~---------~~d~g~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-s~dg~i~iwd~~ 242 (489)
. +.| ++|.+||..... ....+.. .... .........++|+|||+ +++.+ ..++.+.+||+.
T Consensus 83 ~~~~~~~~~g~~d-~~v~v~D~~t~~--~~~~i~~p~~~~----~~~g~~p~~~a~SpDGk-~l~va~~~~~~v~~~d~~ 154 (368)
T d1mdah_ 83 STSFARSAKGKRT-DYVEVFDPVTFL--PIADIELPDAPR----FSVGPRVHIIGNCASSA-CLLFFLFGSSAAAGLSVP 154 (368)
T ss_dssp EEEETTTTSSSEE-EEEEEECTTTCC--EEEEEEETTSCS----CCBSCCTTSEEECTTSS-CEEEEECSSSCEEEEEET
T ss_pred cccCccccccccC-CeEEEEECCCCc--EeeeecCCccce----ecccCCccceEECCCCC-EEEEEeCCCCeEEEEECC
Confidence 3 234 789999994331 1111110 0000 00112234689999999 55544 478999999999
Q ss_pred CCCcCceeeccCCCCceeEEEEee-cCCEEEEEeCCCeEEEEEcCCCcccceee------cCCccCCCCeeEEEeCCCCc
Q 037120 243 VGVLPSLELSTGSHGTLNSIQLHA-ENQIIFAAGKHGSIYLWDLRGGRTSAPFH------NHKEVCHLPLTSLKLASMLE 315 (489)
Q Consensus 243 ~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~~~~~dg~i~lwd~~~~~~~~~~~------~~~~~~~~~v~~l~~~~~~~ 315 (489)
+++ .......+.... +.| ....+++.+.||.+.+|++.......... .+... +..+.+.+++.
T Consensus 155 ~~~--~~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~ 224 (368)
T d1mdah_ 155 GAS--DDQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCS----SQAAQANYPGM 224 (368)
T ss_dssp TTE--EEEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBC----SCCEEETTTTE
T ss_pred CCc--EeEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccc----eeecccccCcE
Confidence 876 444443332221 223 33455555668999888887654422211 11111 34455555554
Q ss_pred ceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCC
Q 037120 316 KIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTN 395 (489)
Q Consensus 316 ~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (489)
.+.+.. ..+..+.+..+.. ..++...+........ .+... ......+.+++
T Consensus 225 ~~~~~~-------~~v~~~~~~~~~~------------~~~~~~~~~~~~~~~~--~~~~~--------g~~~~a~~~~~ 275 (368)
T d1mdah_ 225 LVWAVA-------SSILQGDIPAAGA------------TMKAAIDGNESGRKAD--NFRSA--------GFQMVAKLKNT 275 (368)
T ss_dssp EEECBS-------SCCEEEECCSSCC------------EEECCCCSSCTHHHHT--TEEEC--------SSSCEEEETTT
T ss_pred EEEecC-------CCEEEEeecCCce------------EEEeecccccceeeee--eecCC--------CceeEEEcCCC
Confidence 443211 1111111111110 0111111110000000 01111 12335666676
Q ss_pred cEEEEeecCC--------CcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCC--eEEe
Q 037120 396 SIYAVGSSSD--------HGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNN--TIVA 465 (489)
Q Consensus 396 ~~~l~sgs~d--------~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~--~i~s 465 (489)
+.+++....+ ..|.+||..++ +.+..+. +...+.+++|+|+++ .+++
T Consensus 276 ~~~~v~~~~~~~~~~~~~~~v~v~D~~t~----------~~~~~~~-------------~~~~~~~~a~spDG~~~ly~s 332 (368)
T d1mdah_ 276 DGIMILTVEHSRSCLAAAENTSSVTASVG----------QTSGPIS-------------NGHDSDAIIAAQDGASDNYAN 332 (368)
T ss_dssp TEEEEEEEECSSCTTSCEEEEEEEESSSC----------CEEECCE-------------EEEEECEEEECCSSSCEEEEE
T ss_pred CEEEEEecCCCceeecCCceEEEEECCCC----------cEeEEec-------------CCCceeEEEECCCCCEEEEEE
Confidence 6666543222 36899999988 6665544 446789999999996 4678
Q ss_pred ccCcceeEEEecc
Q 037120 466 GTKNSSLLVVSQK 478 (489)
Q Consensus 466 gs~dg~i~v~~~~ 478 (489)
+..|+.|.||..+
T Consensus 333 ~~~~~~v~v~D~~ 345 (368)
T d1mdah_ 333 SAGTEVLDIYDAA 345 (368)
T ss_dssp ETTTTEEEEEESS
T ss_pred eCCCCeEEEEECC
Confidence 8889999999744
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.23 E-value=1.5e-10 Score=107.41 Aligned_cols=167 Identities=13% Similarity=0.048 Sum_probs=98.2
Q ss_pred eeEEEECCCCcEEEEEe--cCCeEEEEeCCCcccccCCCCCCCCCccccccccc-CCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 99 ISALDFDCKGIYLVSAT--RSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLL-HIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~--~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~-h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
...++|+++|++++.++ .+..+.+|+..+.+..... ........ -... ...+.+++++..+++...
T Consensus 108 ~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~---~~~~~~~~dg~~~~v~~~ 176 (355)
T d2bbkh_ 108 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRML--------DVPDCYHIFPTAP---DTFFMHCRDGSLAKVAFG 176 (355)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEE--------ECCSEEEEEEEET---TEEEEEETTSCEEEEECC
T ss_pred CceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEE--------ecCCcceEeecCC---cceEEEcCCCCEEEEEec
Confidence 56789999999887765 4678999999885544321 00000000 0001 233556666554443333
Q ss_pred cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCC
Q 037120 176 TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGS 255 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h 255 (489)
.+ +.+.+++..... ..+...+....+.+++. .++.++.++.+++|++..++...+.....+
T Consensus 177 ~~-~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 237 (355)
T d2bbkh_ 177 TE-GTPEITHTEVFH-----------------PEDEFLINHPAYSQKAG-RLVWPTYTGKIHQIDLSSGDAKFLPAVEAL 237 (355)
T ss_dssp SS-SCCEEEECCCCS-----------------CTTSCBCSCCEEETTTT-EEEEEBTTSEEEEEECTTSSCEECCCEESS
T ss_pred CC-CeEEEEeccccc-----------------ceecceeeeccccCCCC-eEEEecCCCeEEEEecCCCcEEEEeccCCc
Confidence 33 555555542111 22344566677888887 888899999999999988753323222222
Q ss_pred C----------CceeEEEEeecCCEEEEEeCC----------CeEEEEEcCCCcccceee
Q 037120 256 H----------GTLNSIQLHAENQIIFAAGKH----------GSIYLWDLRGGRTSAPFH 295 (489)
Q Consensus 256 ~----------~~v~~~~~~p~~~~l~~~~~d----------g~i~lwd~~~~~~~~~~~ 295 (489)
. .....++++|++..++....+ ..|.+||..+++.+..+.
T Consensus 238 ~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~ 297 (355)
T d2bbkh_ 238 TEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE 297 (355)
T ss_dssp CHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE
T ss_pred ccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec
Confidence 2 223457788888877766542 367888888776544443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.19 E-value=1.2e-10 Score=109.03 Aligned_cols=261 Identities=7% Similarity=-0.030 Sum_probs=140.5
Q ss_pred EEEECCCCcEEEEEe----------cCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCE
Q 037120 101 ALDFDCKGIYLVSAT----------RSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDE 170 (489)
Q Consensus 101 ~~~fs~~g~~la~g~----------~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~ 170 (489)
.++|+|||+.|++.+ .|+.|++||..+.+..... ..+.......-.. ...++|+|+++.+
T Consensus 69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i-------~~p~~~~~~~g~~---p~~~a~SpDGk~l 138 (368)
T d1mdah_ 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADI-------ELPDAPRFSVGPR---VHIIGNCASSACL 138 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEE-------EETTSCSCCBSCC---TTSEEECTTSSCE
T ss_pred cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeee-------cCCccceecccCC---ccceEECCCCCEE
Confidence 578999999998765 3788999999986554421 0000000001111 2238999999877
Q ss_pred EEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce-
Q 037120 171 VACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL- 249 (489)
Q Consensus 171 l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~- 249 (489)
+++...+ +.+.+||+... +.+.... .+... .+.|.+...++..+.||.+.+|++........
T Consensus 139 ~va~~~~-~~v~~~d~~~~-----~~~~~~~-------~~~~~----~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~ 201 (368)
T d1mdah_ 139 LFFLFGS-SAAAGLSVPGA-----SDDQLTK-------SASCF----HIHPGAAATHYLGSCPASLAASDLAAAPAAAGI 201 (368)
T ss_dssp EEEECSS-SCEEEEEETTT-----EEEEEEE-------CSSCC----CCEEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred EEEeCCC-CeEEEEECCCC-----cEeEEee-------ccCcc----eEccCCCceEEEEcCCCCEEEEEecCCceeeee
Confidence 7665555 99999999432 2222221 11111 12334444777788889988888876543311
Q ss_pred ---eeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCccc--ceeecCCccCCCCeeEEEeCCCCcceeeccccc
Q 037120 250 ---ELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTS--APFHNHKEVCHLPLTSLKLASMLEKIGTLKAQS 324 (489)
Q Consensus 250 ---~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~--~~~~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~ 324 (489)
.....+...+..+.+.+++..+++ ..+.+++++...+... .....+... .....|.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~------------- 262 (368)
T d1mdah_ 202 VGAQCTGAQNCSSQAAQANYPGMLVWA--VASSILQGDIPAAGATMKAAIDGNESG----RKADNFR------------- 262 (368)
T ss_dssp CCCCSCTTSCBCSCCEEETTTTEEEEC--BSSCCEEEECCSSCCEEECCCCSSCTH----HHHTTEE-------------
T ss_pred eecccccccccceeecccccCcEEEEe--cCCCEEEEeecCCceEEEeecccccce----eeeeeec-------------
Confidence 112234455567778887765544 3566777777654431 111111100 0000001
Q ss_pred eeeccceeEEEeCCCCCeEEEEEecCC-c-------eEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCc
Q 037120 325 KIVSQEIHSIDLDPSCSYQLAFHLDDG-W-------SGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNS 396 (489)
Q Consensus 325 ~~~~~~i~~~~~~p~~~~~~~~~~~~~-w-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (489)
......+.+++++..++....++. . ..+++..++....... .. .....+.|+|+|.
T Consensus 263 ---~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~------~~-------~~~~~~a~spDG~ 326 (368)
T d1mdah_ 263 ---SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS------NG-------HDSDAIIAAQDGA 326 (368)
T ss_dssp ---ECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE------EE-------EEECEEEECCSSS
T ss_pred ---CCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec------CC-------CceeEEEECCCCC
Confidence 111123445566555544433322 0 1233433333222110 00 1123467888876
Q ss_pred -EEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhh
Q 037120 397 -IYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLS 433 (489)
Q Consensus 397 -~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 433 (489)
.++++++.|+.|+|||..++ +.+..+.
T Consensus 327 ~~ly~s~~~~~~v~v~D~~tg----------k~~~~i~ 354 (368)
T d1mdah_ 327 SDNYANSAGTEVLDIYDAASD----------QDQSSVE 354 (368)
T ss_dssp CEEEEEETTTTEEEEEESSSC----------EEEEECC
T ss_pred EEEEEEeCCCCeEEEEECCCC----------CEEEEEE
Confidence 46678889999999999999 6666654
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.14 E-value=2.9e-10 Score=106.66 Aligned_cols=325 Identities=10% Similarity=-0.033 Sum_probs=169.8
Q ss_pred EEEEecCCeEEEEeCCCcccccCCC--C--C--CCCCccc----------ccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 111 LVSATRSGCLTVHDFESLYYQCNGT--L--P--GVGLKED----------QSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 111 la~g~~dg~i~vwd~~~~~~~~~~~--~--~--~~g~~~~----------~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
+++|+.+|.|+||++.+++.....+ + + +.|.... ......|.-. +....+.|||+.++++.
T Consensus 14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~---~s~t~gtpDGr~lfV~d 90 (441)
T d1qnia2 14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPH---ISMTDGRYDGKYLFIND 90 (441)
T ss_dssp EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCE---EEEETTEEEEEEEEEEE
T ss_pred EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCC---cceecccCCCCEEEEEc
Confidence 5778889999999998876544311 0 0 0011000 0000112222 45566789998777777
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcE------------------
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVV------------------ 236 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i------------------ 236 (489)
..+ +.|.++|+... +..+... ..+......++|+|+++..++++..+..+
T Consensus 91 ~~~-~rVavIDl~t~-----k~~~ii~------iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~ 158 (441)
T d1qnia2 91 KAN-TRVARIRLDIM-----KTDKITH------IPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMF 158 (441)
T ss_dssp TTT-TEEEEEETTTT-----EEEEEEE------CTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEE
T ss_pred CCC-CEEEEEECCCC-----cEeeEEe------cCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceE
Confidence 666 99999999433 2211111 23456889999999998544544433333
Q ss_pred EEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCC-CeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCc
Q 037120 237 NIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKH-GSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLE 315 (489)
Q Consensus 237 ~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~d-g~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 315 (489)
..+|..+.+ ....... ......++|+|+|+++++++.+ ..+..+|..+.+....+.... . -..+.+.++|+
T Consensus 159 ~~iD~~t~~--v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n-~----p~~~~~~~dGk 230 (441)
T d1qnia2 159 TAIDAETMD--VAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFN-V----ERIAAAVKAGN 230 (441)
T ss_dssp EEEETTTCS--EEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEE-H----HHHHHHHHTTC
T ss_pred EeecCccce--eeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCC-c----cceEEEecCCC
Confidence 457777654 2222211 2456789999999999998874 333334443333222111000 0 01111223332
Q ss_pred ceee---------------ccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccc------eeeecCCCCCCc
Q 037120 316 KIGT---------------LKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSR------VSHVHCPPPAWL 374 (489)
Q Consensus 316 ~i~~---------------~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~------~~~~~~~~~~~~ 374 (489)
++.. +.... -.......+.++|+|+++++....+.-..++++.+.. .....+. .
T Consensus 231 ~~~v~~~~v~vvd~~~~~~v~~~I-PvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~----~ 305 (441)
T d1qnia2 231 FKTIGDSKVPVVDGRGESEFTRYI-PVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTI----V 305 (441)
T ss_dssp CBCCTTCCCCEEECSSSCSSEEEE-CCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGE----E
T ss_pred EEEeCCCCcEEEEcccCCceEEEE-eCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEE----E
Confidence 2200 00000 1123357899999999998876655544566543311 1000000 0
Q ss_pred CCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEE
Q 037120 375 SDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTAC 454 (489)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 454 (489)
.... . -+..-.-.|.++ +...++...|..|..|++......-..-.....+..+... -..||...+.+.
T Consensus 306 ~~~~--~-glgplh~~fd~~-g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~-------y~~GH~~~~~~~ 374 (441)
T d1qnia2 306 AEPE--L-GLGPLHTTFDGR-GNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQ-------YQPGHNHASLTE 374 (441)
T ss_dssp ECCB--C-CSCEEEEEECSS-SEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECS-------SCEEEEEETTTT
T ss_pred eecc--c-ccCcccceecCC-ceEEEcccccceEEEeccchhhhhhccCCCceeEeccccc-------cCCCCCcccccc
Confidence 0000 0 000011234444 5677888999999999985320000000000111111100 013899999999
Q ss_pred EeeCCCCeEEec---cCcceeEE
Q 037120 455 VTHPLNNTIVAG---TKNSSLLV 474 (489)
Q Consensus 455 a~~p~~~~i~sg---s~dg~i~v 474 (489)
+++|+|++|+++ |.|.-+.|
T Consensus 375 t~~pdGk~l~s~~k~s~dr~~~~ 397 (441)
T d1qnia2 375 SRDADGKWLVVLSKFSKDRFLPV 397 (441)
T ss_dssp STTCCCCEEEEEESCCGGGSCCC
T ss_pred ccCCCCcEEEecCccccccCcCC
Confidence 999999999999 66665554
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.08 E-value=5.6e-09 Score=100.94 Aligned_cols=144 Identities=10% Similarity=0.069 Sum_probs=100.6
Q ss_pred EEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeC-------
Q 037120 160 AVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT------- 232 (489)
Q Consensus 160 ~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~------- 232 (489)
.+.|.++++ ++. -. + +.|.+||+..+... ..+. .. ++..|...|.++.|+||++ .|+.++.
T Consensus 21 ~~~W~~d~~-~~~-~~-~-~~~~~~~~~t~~~~--~~~~-~~----~~~~~~~~i~~~~~SpDg~-~i~~~~~~~~~~r~ 88 (470)
T d2bgra1 21 SLRWISDHE-YLY-KQ-E-NNILVFNAEYGNSS--VFLE-NS----TFDEFGHSINDYSISPDGQ-FILLEYNYVKQWRH 88 (470)
T ss_dssp CCEECSSSE-EEE-ES-S-SCEEEEETTTCCEE--EEEC-TT----TTTTSSSCCCEEEECTTSS-EEEEEEEEEECSSS
T ss_pred CCEeCCCCE-EEE-Ec-C-CcEEEEECCCCCEE--EEEc-hh----hhhhccCccceeEECCCCC-EEEEEECCcceeee
Confidence 388999875 333 33 4 88999999544311 1221 12 2367788999999999999 7777643
Q ss_pred --CCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCcc----------
Q 037120 233 --HGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEV---------- 300 (489)
Q Consensus 233 --dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~---------- 300 (489)
++.+.+||+.+++ ...+..|...+..+.|+|||+.++.. .++.+++|+..+++...........
T Consensus 89 s~~~~~~l~d~~~~~---~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~ 164 (470)
T d2bgra1 89 SYTASYDIYDLNKRQ---LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWV 164 (470)
T ss_dssp CEEEEEEEEETTTTE---ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHH
T ss_pred ccCceEEEEECCCCc---ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeeccCCCccccccccee
Confidence 5678999999876 33455778889999999999998875 5778999999988764332211100
Q ss_pred ----CCCCeeEEEeCCCCcceee
Q 037120 301 ----CHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 301 ----~~~~v~~l~~~~~~~~i~~ 319 (489)
.......+.|+|||+.++.
T Consensus 165 ~~~~~~~~~~~~~wSPDGk~ia~ 187 (470)
T d2bgra1 165 YEEEVFSAYSALWWSPNGTFLAY 187 (470)
T ss_dssp HHHHTSSSSBCEEECTTSSEEEE
T ss_pred eeeeecCCccccEECCCCCccce
Confidence 0012466889999998844
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.94 E-value=4.3e-09 Score=98.55 Aligned_cols=268 Identities=8% Similarity=-0.033 Sum_probs=146.6
Q ss_pred CEEEEEecCCCEEEEEEeccCCCCCceeeeeceee-----------------------eeecCCcccCeeEEEEecCCCc
Q 037120 169 DEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSV-----------------------TVVGSDVQKGLSDLAFSAVNTS 225 (489)
Q Consensus 169 ~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~-----------------------~~~~~~h~~~v~~~~~~~~~~~ 225 (489)
+.+++++.+ |+|++||+... +.++....| ......|........+.|||+.
T Consensus 12 y~f~Sgg~s-G~V~V~dlpS~-----r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~ 85 (441)
T d1qnia2 12 YGFWSGGHQ-GEVRVLGVPSM-----RELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKY 85 (441)
T ss_dssp EEEEECBTT-CCEEEEEETTT-----EEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEE
T ss_pred EEEEeCCCC-CcEEEEeCCCC-----cEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCE
Confidence 456677776 99999999432 222222111 0112335555666667899994
Q ss_pred EEEEEeCCCcEEEEECCCCCcCceeecc-CCCCceeEEEEeecCCEE--EEEeCCC-----------------eEEEEEc
Q 037120 226 RLIASDTHGVVNIWDRRVGVLPSLELST-GSHGTLNSIQLHAENQII--FAAGKHG-----------------SIYLWDL 285 (489)
Q Consensus 226 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l--~~~~~dg-----------------~i~lwd~ 285 (489)
++++...++.|.++|+++.+ +.+... .+...+..++|+|+++.+ +..+.+. .+..+|.
T Consensus 86 lfV~d~~~~rVavIDl~t~k--~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~ 163 (441)
T d1qnia2 86 LFINDKANTRVARIRLDIMK--TDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDA 163 (441)
T ss_dssp EEEEETTTTEEEEEETTTTE--EEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEET
T ss_pred EEEEcCCCCEEEEEECCCCc--EeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecC
Confidence 55666688999999999876 433332 456788999999999954 4333332 2345777
Q ss_pred CCCcccceeecCCccCCCCeeEEEeCCCCcceeec--cccce----e-eccce---------eEEEeCCCCCeEEEEEec
Q 037120 286 RGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGTL--KAQSK----I-VSQEI---------HSIDLDPSCSYQLAFHLD 349 (489)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~~--~~~~~----~-~~~~i---------~~~~~~p~~~~~~~~~~~ 349 (489)
.+.+....+... .. ...+.|+|+|+.+... ..... . ....+ ..+.+.|+++++... +
T Consensus 164 ~t~~v~~qI~v~-~~----p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~--~ 236 (441)
T d1qnia2 164 ETMDVAWQVIVD-GN----LDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIG--D 236 (441)
T ss_dssp TTCSEEEEEEES-SC----CCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCT--T
T ss_pred ccceeeEEEecC-CC----ccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeC--C
Confidence 776655554432 22 5677788888765221 00000 0 00000 111234444443221 0
Q ss_pred CCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCccc
Q 037120 350 DGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDI 429 (489)
Q Consensus 350 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~ 429 (489)
++-..+.......... .++.. .....+..+|+|..++++|..+++|.|||+.+. ..
T Consensus 237 ~~v~vvd~~~~~~v~~--~IPvg-----------ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~----------~~- 292 (441)
T d1qnia2 237 SKVPVVDGRGESEFTR--YIPVP-----------KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKL----------DD- 292 (441)
T ss_dssp CCCCEEECSSSCSSEE--EECCB-----------SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGH----------HH-
T ss_pred CCcEEEEcccCCceEE--EEeCC-----------CCccCceECCCCCEEEEeCCcCCcEEEEEeehh----------hh-
Confidence 1101111100000000 00000 112456778888888999999999999999754 11
Q ss_pred chhhHhhhhcccCCccc---CCCceEEEEeeCCCCeEEeccCcceeEEEecc
Q 037120 430 ESLSERTKLKKENRFVP---LSEGVTACVTHPLNNTIVAGTKNSSLLVVSQK 478 (489)
Q Consensus 430 ~~~~~~~~~~~~~~~~~---h~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~ 478 (489)
.++ +.........+ ..-.....+|.+.+..+.+...|+.|..|.-+
T Consensus 293 -~~~--~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 293 -LFE--DKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp -HTT--TSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred -Hhh--ccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccc
Confidence 111 00000000001 11234667999999999999999999999854
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.88 E-value=6.8e-07 Score=82.74 Aligned_cols=176 Identities=11% Similarity=0.029 Sum_probs=97.0
Q ss_pred CCCceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE
Q 037120 95 GKPGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA 174 (489)
Q Consensus 95 ~~~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~ 174 (489)
....+.-|+|+|++++|.+... +.+..|.+........ . ..+.... ....++++++++.++++.
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~--------~------~~~~~~~-~p~~v~~~~~~~~~~v~~ 101 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVH--------E------ASHPIGG-HPRANDADTNTRAIFLLA 101 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEE--------E------EEEECCS-SGGGGCTTSCCEEEEEEE
T ss_pred CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEE--------E------eeecCCC-CcEEEEECCCCCEEEEEE
Confidence 3445677999999999987765 5678887764211110 0 0000000 023366777765443332
Q ss_pred -ecCCCEEEEEEeccCCCC--------CceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCCcEEEEECCCC
Q 037120 175 -STRSNVVSIYDIGYISDE--------PVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THGVVNIWDRRVG 244 (489)
Q Consensus 175 -~~d~g~i~vwd~~~~~~~--------~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~ 244 (489)
....++|..+.+...... ....-...... .......+.++.|+|+|+ ++++++ ....|.+|+....
T Consensus 102 a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~q~~~h~h~v~~sPdG~-~l~v~d~g~d~v~~~~~~~~ 177 (365)
T d1jofa_ 102 AKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNY---EYQENTGIHGMVFDPTET-YLYSADLTANKLWTHRKLAS 177 (365)
T ss_dssp CSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEE---ECCTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTT
T ss_pred ecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCc---ccCCCCcceEEEECCCCC-EEEEeeCCCCEEEEEEccCC
Confidence 222245555544211100 00000000000 011223478999999999 555555 4567888876543
Q ss_pred CcC-ceee--ccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcc
Q 037120 245 VLP-SLEL--STGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRT 290 (489)
Q Consensus 245 ~~~-~~~~--~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~ 290 (489)
... .... ..........++|+|+++++++... +++|.+||+...+.
T Consensus 178 g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~ 227 (365)
T d1jofa_ 178 GEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATH 227 (365)
T ss_dssp SCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTC
T ss_pred CceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCc
Confidence 211 1111 1123456789999999999988877 99999999976543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=1.9e-06 Score=75.73 Aligned_cols=155 Identities=11% Similarity=0.052 Sum_probs=89.3
Q ss_pred CceeEEEECCCCcEEEEEecCC---eEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEE
Q 037120 97 PGISALDFDCKGIYLVSATRSG---CLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVAC 173 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg---~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s 173 (489)
..+..-+|||||+.||-..... .+.+.+........ ...+... .....|+|++..++..
T Consensus 39 ~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~---~~~~~~spdg~~i~~~ 100 (269)
T d2hqsa1 39 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ---------------VASFPRH---NGAPAFSPDGSKLAFA 100 (269)
T ss_dssp SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE---------------EECCSSC---EEEEEECTTSSEEEEE
T ss_pred CceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE---------------Eeeeecc---cccceecCCCCeeeEe
Confidence 4477889999999999765532 35555555422111 1112223 6779999999866665
Q ss_pred EecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCc--EEEEECCCCCcCceee
Q 037120 174 ASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGV--VNIWDRRVGVLPSLEL 251 (489)
Q Consensus 174 ~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~--i~iwd~~~~~~~~~~~ 251 (489)
...+ +...++......... .. ............+++++...+++...++. |.+.++..+.. . .
T Consensus 101 ~~~~-~~~~~~~~~~~~~~~------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~--~-~ 165 (269)
T d2hqsa1 101 LSKT-GSLNLYVMDLASGQI------RQ-----VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP--Q-R 165 (269)
T ss_dssp ECTT-SSCEEEEEETTTCCE------EE-----CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC--E-E
T ss_pred eecC-Cccceeecccccccc------ee-----eeeccccccccccccccccceecccccCCceEeeeecccccc--e-e
Confidence 5544 555555442222111 00 02223344455678888755566656664 45556555432 2 2
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEE
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWD 284 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd 284 (489)
...+........|+|+++.++..+. .+...+|.
T Consensus 166 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~~ 199 (269)
T d2hqsa1 166 ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAK 199 (269)
T ss_dssp CCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEE
T ss_pred eecccccccccccccccceeEEEeecCCceeeeE
Confidence 3344566778899999999888866 44444433
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.68 E-value=6.9e-06 Score=71.76 Aligned_cols=156 Identities=10% Similarity=-0.012 Sum_probs=92.3
Q ss_pred ceeEEEECCCCcEEEEE-ecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 98 GISALDFDCKGIYLVSA-TRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g-~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
+-..|+++++|++.++. +..+.+..++.......... ..+ ... ...+++++++. ++++...
T Consensus 15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~-------------~~~-~~~---p~gvav~~~g~-i~v~d~~ 76 (260)
T d1rwia_ 15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLP-------------FNG-LYQ---PQGLAVDGAGT-VYVTDFN 76 (260)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECC-------------CCS-CCS---CCCEEECTTCC-EEEEETT
T ss_pred CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEec-------------cCC-ccC---ceEEEEcCCCC-EEEeeee
Confidence 35788999999976665 45577777766652221110 000 111 34489999874 6666664
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~ 256 (489)
+ +.+++++-... ..+.. ........++++.+++. ++++-.....+..++....... . ......
T Consensus 77 ~-~~i~~~~~~~~-----~~~~~--------~~~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~~-~-~~~~~~ 139 (260)
T d1rwia_ 77 N-RVVTLAAGSNN-----QTVLP--------FDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQT-V-LPFTGL 139 (260)
T ss_dssp T-EEEEECTTCSC-----CEECC--------CCSCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSCE-E-CCCCSC
T ss_pred e-ceeeeeeeccc-----eeeee--------eeeeeecccccccccce-eEeeccccccccccccccceee-e-eeeccc
Confidence 4 56655543111 11111 11123578899999988 7776666777888876654311 1 111222
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEEcCCC
Q 037120 257 GTLNSIQLHAENQIIFAAGKHGSIYLWDLRGG 288 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~ 288 (489)
.....++++|+++++++...++.|..+|....
T Consensus 140 ~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~ 171 (260)
T d1rwia_ 140 NDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN 171 (260)
T ss_dssp CSCCEEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred CCcceeeecCCCCEeeeccccccccccccccc
Confidence 44578999999998777777888999987753
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.63 E-value=3.6e-06 Score=75.47 Aligned_cols=184 Identities=9% Similarity=0.003 Sum_probs=115.5
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
-+..++++|||+++++...++.|..|+........ ..... .+.+++|.+++. ++++...+
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~----------------~~~~~---~~~gla~~~dG~-l~v~~~~~ 88 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIH----------------ATVEG---KVSGLAFTSNGD-LVATGWNA 88 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEE----------------EECSS---EEEEEEECTTSC-EEEEEECT
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEE----------------EcCCC---CcceEEEcCCCC-eEEEecCC
Confidence 37789999999999999999999888866521111 00111 278899999986 77776655
Q ss_pred CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCcee------e
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLE------L 251 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~------~ 251 (489)
+.+.+|+........ ..+.. .......+.+++.+++. ++++.+.++.+..+|...+...... .
T Consensus 89 -~~~~~~~~~~~~~~~-~~~~~--------~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 157 (302)
T d2p4oa1 89 -DSIPVVSLVKSDGTV-ETLLT--------LPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR 157 (302)
T ss_dssp -TSCEEEEEECTTSCE-EEEEE--------CTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSC
T ss_pred -ceEEEEEecccccce-eeccc--------cCCccccceeEEccCCC-EEeeccccccceeeeccCCcceeEecCCccce
Confidence 788888874332221 11111 12334688999999998 8888888899999988765321110 0
Q ss_pred ccCC--CCceeEEEEeecCCEEEEEe-CCCeEEEEEcCCCcccceee--cCCccCCCCeeEEEeCCCCccee
Q 037120 252 STGS--HGTLNSIQLHAENQIIFAAG-KHGSIYLWDLRGGRTSAPFH--NHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 252 ~~~h--~~~v~~~~~~p~~~~l~~~~-~dg~i~lwd~~~~~~~~~~~--~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
...+ ......+.+ ++..++.+. ..+.|+.+|+.......... ..... ...+++.++|....
T Consensus 158 ~~~~~~~~~~ngi~~--~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----pdgia~d~dG~l~v 223 (302)
T d2p4oa1 158 SNSESVFPAANGLKR--FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTN----IDDFAFDVEGNLYG 223 (302)
T ss_dssp SSTTCCSCSEEEEEE--ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCC----CSSEEEBTTCCEEE
T ss_pred eeccCcccccccccc--cCCceeeecCCCCeEEeccccccccccccccccCCCC----CcceEECCCCCEEE
Confidence 0111 123445555 455555554 48999999987654422221 11222 56789999987654
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.62 E-value=1.7e-06 Score=79.90 Aligned_cols=178 Identities=15% Similarity=0.025 Sum_probs=103.9
Q ss_pred CceeEEEECCCCcEEEEEec-CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 97 PGISALDFDCKGIYLVSATR-SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~-dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
..+.++.|+|+|++|+++.. ...|.+|+........ ...... -...+.+...++|+|+++.+.++..
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~-----------~~~~~~-~~~~g~gPr~i~f~pdg~~~yv~~e 212 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVE-----------LVGSVD-APDPGDHPRWVAMHPTGNYLYALME 212 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEE-----------EEEEEE-CSSTTCCEEEEEECTTSSEEEEEET
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCcee-----------ecccee-ecCCCCceEEEEECCCCceEEEecc
Confidence 34789999999998888765 4578888765421111 000000 1112233778999999986666665
Q ss_pred cCCCEEEEEEeccCCCCCceeeeeceee-------eeecCCcccCeeEEEEecCCCcEEEEEe-CCC-----cEEEEECC
Q 037120 176 TRSNVVSIYDIGYISDEPVEVLKTRRSV-------TVVGSDVQKGLSDLAFSAVNTSRLIASD-THG-----VVNIWDRR 242 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~~~~~~~~~~~-------~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg-----~i~iwd~~ 242 (489)
.+ ++|.+|++................. ......+......+.++|+|+ +|+++. .+. .|..|++.
T Consensus 213 ~~-~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~-~lyvsnr~~~~~~~~~i~~~~~~ 290 (365)
T d1jofa_ 213 AG-NRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK-YMFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp TT-TEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS-EEEEEEEESSTTSCCEEEEEEEC
T ss_pred CC-CEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCC-EEEEEcccCCCccceEEEEEEec
Confidence 55 9999999954332211111111000 000112333466899999999 655553 222 37777776
Q ss_pred CCCcC----ceeeccCCCCceeEEEEee-cCCEEEEEeC-CCeEEEEEcCCC
Q 037120 243 VGVLP----SLELSTGSHGTLNSIQLHA-ENQIIFAAGK-HGSIYLWDLRGG 288 (489)
Q Consensus 243 ~~~~~----~~~~~~~h~~~v~~~~~~p-~~~~l~~~~~-dg~i~lwd~~~~ 288 (489)
..... .+............++++| +|++|+++.. ++.|.+|+++..
T Consensus 291 ~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 291 DCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 53211 1111112223456799998 8999888865 899999987653
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.56 E-value=8.2e-05 Score=65.41 Aligned_cols=189 Identities=11% Similarity=0.068 Sum_probs=115.0
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
-..|+++++|+++++-..++.|++||.+........ ... ...+.... -..+++..+....+++.....
T Consensus 25 P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~------~~~---~~~~~~~~---p~~~~~~~~~~~~~~~~~~~~ 92 (279)
T d1q7fa_ 25 PSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFG------ECG---KRDSQLLY---PNRVAVVRNSGDIIVTERSPT 92 (279)
T ss_dssp EEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEEC------CBS---SSTTCBSS---EEEEEEETTTTEEEEEECGGG
T ss_pred ccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEec------ccC---CCcccccc---cccccccccccccceeccCCc
Confidence 578899999998888778899999997652111100 000 00001111 334666655444555444333
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeec--cCCC
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELS--TGSH 256 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~h~ 256 (489)
+.|.+++... ....... .........+++.+++. ++++....+.+.++|... + .+..+ ..+.
T Consensus 93 ~~i~~~~~~g------~~~~~~~------~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~g-~--~~~~~g~~~~~ 156 (279)
T d1q7fa_ 93 HQIQIYNQYG------QFVRKFG------ATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQNG-N--VLHKFGCSKHL 156 (279)
T ss_dssp CEEEEECTTS------CEEEEEC------TTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTTS-C--EEEEEECTTTC
T ss_pred cccccccccc------cceeecC------CCcccccceeccccCCc-EEEEeeccceeeEeccCC-c--eeecccccccc
Confidence 6777777521 1111111 22344677889999888 777777777888887653 3 23222 2455
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCccee
Q 037120 257 GTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~ 318 (489)
.....++++++++.+++....+.|++||.. ++.+..+...... .....|++.++|..+.
T Consensus 157 ~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~~--~~P~giavD~~G~i~V 215 (279)
T d1q7fa_ 157 EFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGIT--NYPIGVGINSNGEILI 215 (279)
T ss_dssp SSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTS--CSEEEEEECTTCCEEE
T ss_pred cccceeeeccceeEEeeeccccceeeeecC-Cceeeeecccccc--cCCcccccccCCeEEE
Confidence 677889999999887777779999999965 5555555321111 2267888888887664
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=7.4e-05 Score=70.94 Aligned_cols=198 Identities=11% Similarity=0.016 Sum_probs=106.8
Q ss_pred ceeEEEECCCCcEEEEEec---------CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCC
Q 037120 98 GISALDFDCKGIYLVSATR---------SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQ 168 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~---------dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~ 168 (489)
.+....|||||++++.... .+.+.|+|+.+........ . ...... +....|+|++.
T Consensus 62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~------~------~~~~~~---l~~~~wSPDG~ 126 (465)
T d1xfda1 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP------P------EVSNAK---LQYAGWGPKGQ 126 (465)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC------T------TCCSCC---CSBCCBCSSTT
T ss_pred ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccC------c------cCCccc---cceeeeccCCc
Confidence 4677889999999887743 5778899998754433110 0 001111 44579999998
Q ss_pred CEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcc---------cCeeEEEEecCCCcEEEEEe-CCCc---
Q 037120 169 DEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQ---------KGLSDLAFSAVNTSRLIASD-THGV--- 235 (489)
Q Consensus 169 ~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~---------~~v~~~~~~~~~~~~l~s~s-~dg~--- 235 (489)
.++.. . ++.|.+.+.... ...+.......- ..+.|.. ..-.++.|+|||+ .|+... .+..
T Consensus 127 ~iafv-~--~~nl~~~~~~~~--~~~~lt~~g~~~-~i~nG~~d~vyeee~~~~~~a~~WSPDgk-~iaf~~~D~s~V~~ 199 (465)
T d1xfda1 127 QLIFI-F--ENNIYYCAHVGK--QAIRVVSTGKEG-VIYNGLSDWLYEEEILKTHIAHWWSPDGT-RLAYAAINDSRVPI 199 (465)
T ss_dssp CEEEE-E--TTEEEEESSSSS--CCEEEECCCBTT-TEEEEECCHHHHHTTSSSSEEEEECTTSS-EEEEEEEECTTSCE
T ss_pred eEEEE-e--cceEEEEecCCC--ceEEEecccCcc-eeeccccchhhhhhhccccceEEECCCCC-eEEEEEecccccce
Confidence 65554 4 378888877432 221222111100 0001111 1225788999999 666654 2332
Q ss_pred ------------------------------EEEEECCCCCcCceee----ccCCCCceeEEEEeecCCEEEEEeC----C
Q 037120 236 ------------------------------VNIWDRRVGVLPSLEL----STGSHGTLNSIQLHAENQIIFAAGK----H 277 (489)
Q Consensus 236 ------------------------------i~iwd~~~~~~~~~~~----~~~h~~~v~~~~~~p~~~~l~~~~~----d 277 (489)
+.++|+..+....... .......+..+.|.|+++.++.... .
T Consensus 200 ~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~ 279 (465)
T d1xfda1 200 MELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNV 279 (465)
T ss_dssp EEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCE
T ss_pred eecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEcccccc
Confidence 3445554432111100 1112234678899999987666543 2
Q ss_pred CeEEEEEcCCCcccceeecCCc-cCCCCeeEEEeCCCCcce
Q 037120 278 GSIYLWDLRGGRTSAPFHNHKE-VCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 278 g~i~lwd~~~~~~~~~~~~~~~-~~~~~v~~l~~~~~~~~i 317 (489)
..|.++|..++++...+....+ .-...-....|+++|+.+
T Consensus 280 ~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~ 320 (465)
T d1xfda1 280 SILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF 320 (465)
T ss_dssp EEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred ceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCee
Confidence 3688899999887443332211 100012345788888754
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=5e-05 Score=72.12 Aligned_cols=144 Identities=8% Similarity=-0.043 Sum_probs=85.8
Q ss_pred EECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEE--------
Q 037120 103 DFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACA-------- 174 (489)
Q Consensus 103 ~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~-------- 174 (489)
.|.+++.++.. ..+|.|.+||+.+..... +. ..+......+....|+||+..+++..
T Consensus 23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~---------l~-----~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~ 87 (465)
T d1xfda1 23 KWISDTEFIYR-EQKGTVRLWNVETNTSTV---------LI-----EGKKIESLRAIRYEISPDREYALFSYNVEPIYQH 87 (465)
T ss_dssp CBSSSSCBCCC-CSSSCEEEBCGGGCCCEE---------EE-----CTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSS
T ss_pred EEeCCCcEEEE-eCCCcEEEEECCCCCEEE---------EE-----cCccccccccceeEECCCCCeEEEEEcccceeEe
Confidence 47777765543 457889999998743221 00 11111222366789999998766653
Q ss_pred ecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeecc-
Q 037120 175 STRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELST- 253 (489)
Q Consensus 175 ~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~- 253 (489)
+.. +.+.++|+..+... .+.. .......+....|+|+|+ .|+-.. ++.|.+.+...+.. .+...
T Consensus 88 s~~-~~~~i~d~~~~~~~---~l~~-------~~~~~~~l~~~~wSPDG~-~iafv~-~~nl~~~~~~~~~~--~~lt~~ 152 (465)
T d1xfda1 88 SYT-GYYVLSKIPHGDPQ---SLDP-------PEVSNAKLQYAGWGPKGQ-QLIFIF-ENNIYYCAHVGKQA--IRVVST 152 (465)
T ss_dssp CCC-SEEEEEESSSCCCE---ECCC-------TTCCSCCCSBCCBCSSTT-CEEEEE-TTEEEEESSSSSCC--EEEECC
T ss_pred ecc-ccEEEEEccCCcee---eccC-------ccCCccccceeeeccCCc-eEEEEe-cceEEEEecCCCce--EEEecc
Confidence 223 78899999543211 1111 122233566688999999 666655 67888888876542 22221
Q ss_pred CCCCc-----------------eeEEEEeecCCEEEEEeC
Q 037120 254 GSHGT-----------------LNSIQLHAENQIIFAAGK 276 (489)
Q Consensus 254 ~h~~~-----------------v~~~~~~p~~~~l~~~~~ 276 (489)
+..+. -..+-|+|||++|+....
T Consensus 153 g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~ 192 (465)
T d1xfda1 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAI 192 (465)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEE
T ss_pred cCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEe
Confidence 11111 146789999999988753
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.39 E-value=5.1e-06 Score=74.42 Aligned_cols=171 Identities=13% Similarity=0.034 Sum_probs=101.5
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..+.+++|+++|+++++...++.+.+|+........ . .............+++.+++. ++++.+.
T Consensus 68 ~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~----------~----~~~~~~~~~~~n~i~~~~~g~-~~v~~~~ 132 (302)
T d2p4oa1 68 GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV----------E----TLLTLPDAIFLNGITPLSDTQ-YLTADSY 132 (302)
T ss_dssp SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE----------E----EEEECTTCSCEEEEEESSSSE-EEEEETT
T ss_pred CCcceEEEcCCCCeEEEecCCceEEEEEecccccce----------e----eccccCCccccceeEEccCCC-EEeeccc
Confidence 458999999999999999888888888765521111 0 001111111267799999874 6666665
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~ 256 (489)
+ +.+..+|....... ..+.................+.+.+. +..++++.+..+.|..+|................
T Consensus 133 ~-~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 207 (302)
T d2p4oa1 133 R-GAIWLIDVVQPSGS--IWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ 207 (302)
T ss_dssp T-TEEEEEETTTTEEE--EEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES
T ss_pred c-ccceeeeccCCcce--eEecCCccceeeccCccccccccccc--CCceeeecCCCCeEEeccccccccccccccccCC
Confidence 5 78888877432100 00000000000012222345666665 4436777778899999988765322111111123
Q ss_pred CceeEEEEeecCCEEEEEeCCCeEEEEEcCC
Q 037120 257 GTLNSIQLHAENQIIFAAGKHGSIYLWDLRG 287 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~ 287 (489)
.....++++++|.+.++...++.|..++...
T Consensus 208 ~~pdgia~d~dG~l~va~~~~~~V~~i~p~G 238 (302)
T d2p4oa1 208 TNIDDFAFDVEGNLYGATHIYNSVVRIAPDR 238 (302)
T ss_dssp CCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred CCCcceEECCCCCEEEEEcCCCcEEEECCCC
Confidence 4456799999999777777788999998754
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.35 E-value=0.00031 Score=61.50 Aligned_cols=246 Identities=10% Similarity=0.049 Sum_probs=134.0
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCCcE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THGVV 236 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg~i 236 (489)
-..|++++++. ++++-..+ +.|++||... ..+...... ....+....-..+++.++....+++.. .++.|
T Consensus 25 P~gvavd~dg~-i~VaD~~n-~rI~v~d~~G------~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i 95 (279)
T d1q7fa_ 25 PSGVAVNAQND-IIVADTNN-HRIQIFDKEG------RFKFQFGEC-GKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQI 95 (279)
T ss_dssp EEEEEECTTCC-EEEEEGGG-TEEEEECTTS------CEEEEECCB-SSSTTCBSSEEEEEEETTTTEEEEEECGGGCEE
T ss_pred ccEEEEcCCCC-EEEEECCC-CEEEEEeCCC------CEEEEeccc-CCCcccccccccccccccccccceeccCCcccc
Confidence 45699999875 77776656 8999998621 111111100 000112223455666666553444433 55677
Q ss_pred EEEECCCCCcCceeec-cCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCc
Q 037120 237 NIWDRRVGVLPSLELS-TGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLE 315 (489)
Q Consensus 237 ~iwd~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 315 (489)
..++.. ++ ....+ .........+++.+++.++++....+.+.++|.. ++.+..+...... .....+++.+++.
T Consensus 96 ~~~~~~-g~--~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~--~~~~~i~~d~~g~ 169 (279)
T d1q7fa_ 96 QIYNQY-GQ--FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHL--EFPNGVVVNDKQE 169 (279)
T ss_dssp EEECTT-SC--EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTC--SSEEEEEECSSSE
T ss_pred cccccc-cc--ceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-Cceeecccccccc--cccceeeecccee
Confidence 777754 33 22222 2334567789999999988887778888888854 4555555322211 2367788888876
Q ss_pred ceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCcCCCCccccccCCCcceeecCC
Q 037120 316 KIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWLSDSNNSADQLHLRKPSWLSTN 395 (489)
Q Consensus 316 ~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (489)
.+...... ..|. .+++++..+..+...+. . . ....++..++|
T Consensus 170 i~v~d~~~-----~~V~--~~d~~G~~~~~~g~~g~-----------~----------~----------~P~giavD~~G 211 (279)
T d1q7fa_ 170 IFISDNRA-----HCVK--VFNYEGQYLRQIGGEGI-----------T----------N----------YPIGVGINSNG 211 (279)
T ss_dssp EEEEEGGG-----TEEE--EEETTCCEEEEESCTTT-----------S----------C----------SEEEEEECTTC
T ss_pred EEeeeccc-----ccee--eeecCCceeeeeccccc-----------c----------c----------CCcccccccCC
Confidence 55432111 1111 24455554433221110 0 0 01223444555
Q ss_pred cEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEEEeeCCCCeEEeccCcceeEEE
Q 037120 396 SIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTACVTHPLNNTIVAGTKNSSLLVV 475 (489)
Q Consensus 396 ~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~va~~p~~~~i~sgs~dg~i~v~ 475 (489)
..|++-...++.|.+++- .+ +.+..+... ........||+.|++..+++. .+.+|.+|
T Consensus 212 ~i~Vad~~~~~~v~~f~~-~G----------~~~~~~~~~----------~~~~~p~~vav~~dG~l~V~~-~n~~v~~f 269 (279)
T d1q7fa_ 212 EILIADNHNNFNLTIFTQ-DG----------QLISALESK----------VKHAQCFDVALMDDGSVVLAS-KDYRLYIY 269 (279)
T ss_dssp CEEEEECSSSCEEEEECT-TS----------CEEEEEEES----------SCCSCEEEEEEETTTEEEEEE-TTTEEEEE
T ss_pred eEEEEECCCCcEEEEECC-CC----------CEEEEEeCC----------CCCCCEeEEEEeCCCcEEEEe-CCCeEEEE
Confidence 555543344557888874 34 333333200 122346889999999866654 68899998
Q ss_pred ecc
Q 037120 476 SQK 478 (489)
Q Consensus 476 ~~~ 478 (489)
--.
T Consensus 270 r~~ 272 (279)
T d1q7fa_ 270 RYV 272 (279)
T ss_dssp ECS
T ss_pred Eee
Confidence 644
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.34 E-value=0.00037 Score=62.36 Aligned_cols=159 Identities=12% Similarity=0.133 Sum_probs=91.9
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC-
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR- 177 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d- 177 (489)
+..++|+++|++.++-...+.|..|+.+....... ..+ .... ...+++.+++. ++++...+
T Consensus 42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~--------~~~------~~~~---p~gla~~~dG~-l~va~~~~~ 103 (319)
T d2dg1a1 42 LEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP--------FVS------HKAN---PAAIKIHKDGR-LFVCYLGDF 103 (319)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE--------EEC------SSSS---EEEEEECTTSC-EEEEECTTS
T ss_pred cEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEE--------EeC------CCCC---eeEEEECCCCC-EEEEecCCC
Confidence 56889999999888877899999888876322210 000 1111 56799999985 66654321
Q ss_pred CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeC------CCcEEEEECCCCCcCceee
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDT------HGVVNIWDRRVGVLPSLEL 251 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~ 251 (489)
.....++.+............. ..-....+.+++.++|. +.++... .+.+..++..... +..
T Consensus 104 ~~~~~i~~~~~~~~~~~~~~~~--------~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~---~~~ 171 (319)
T d2dg1a1 104 KSTGGIFAATENGDNLQDIIED--------LSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRT---VTP 171 (319)
T ss_dssp SSCCEEEEECTTSCSCEEEECS--------SSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCC---EEE
T ss_pred ccceeEEEEcCCCceeeeeccC--------CCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccce---eEE
Confidence 1233444442222111111110 11123578899999998 6665432 1235555544322 211
Q ss_pred ccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCC
Q 037120 252 STGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRG 287 (489)
Q Consensus 252 ~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~ 287 (489)
....-...+.++|+|+++.|+.+.. .+.|+.||+..
T Consensus 172 ~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~ 208 (319)
T d2dg1a1 172 IIQNISVANGIALSTDEKVLWVTETTANRLHRIALED 208 (319)
T ss_dssp EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred EeeccceeeeeeeccccceEEEecccCCceEEEEEcC
Confidence 1111234578999999998766654 88999998864
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.26 E-value=6.7e-05 Score=65.22 Aligned_cols=155 Identities=8% Similarity=-0.009 Sum_probs=99.7
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCC
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRS 178 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~ 178 (489)
...++++++|+++++....+.+++++-.+...... ...... ..++++.+++. ++++-..+
T Consensus 59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~---------------~~~~~~---p~~iavd~~g~-i~v~d~~~- 118 (260)
T d1rwia_ 59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLP---------------FDGLNY---PEGLAVDTQGA-VYVADRGN- 118 (260)
T ss_dssp CCCEEECTTCCEEEEETTTEEEEECTTCSCCEECC---------------CCSCCS---EEEEEECTTCC-EEEEEGGG-
T ss_pred ceEEEEcCCCCEEEeeeeeceeeeeeeccceeeee---------------eeeeee---cccccccccce-eEeecccc-
Confidence 56789999999888888787777776554222211 000111 67799999875 66665544
Q ss_pred CEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCc
Q 037120 179 NVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGT 258 (489)
Q Consensus 179 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~ 258 (489)
..+..++..... ..... ..-......+++.+++. ++++...++.|..+|..... ........-..
T Consensus 119 ~~~~~~~~~~~~----~~~~~--------~~~~~~p~~i~~~~~g~-~~v~~~~~~~i~~~d~~~~~--~~~~~~~~~~~ 183 (260)
T d1rwia_ 119 NRVVKLAAGSKT----QTVLP--------FTGLNDPDGVAVDNSGN-VYVTDTDNNRVVKLEAESNN--QVVLPFTDITA 183 (260)
T ss_dssp TEEEEECTTCSS----CEECC--------CCSCCSCCEEEECTTCC-EEEEEGGGTEEEEECTTTCC--EEECCCSSCCS
T ss_pred ccccccccccce----eeeee--------ecccCCcceeeecCCCC-Eeeeccccccccccccccce--eeeeeccccCC
Confidence 677777652211 00000 11122457899999988 88888888899999987644 22222233455
Q ss_pred eeEEEEeecCCEEEEEeCCCeEEEEEcCCC
Q 037120 259 LNSIQLHAENQIIFAAGKHGSIYLWDLRGG 288 (489)
Q Consensus 259 v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~ 288 (489)
...++++++|.+.++-...+.|..++....
T Consensus 184 p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~ 213 (260)
T d1rwia_ 184 PWGIAVDEAGTVYVTEHNTNQVVKLLAGST 213 (260)
T ss_dssp EEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred CccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence 688999999987776666888888876543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.25 E-value=6.3e-05 Score=65.47 Aligned_cols=182 Identities=13% Similarity=0.032 Sum_probs=103.0
Q ss_pred cCCCceeEEEECCCCcEEEEEec-CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEE
Q 037120 94 FGKPGISALDFDCKGIYLVSATR-SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVA 172 (489)
Q Consensus 94 ~~~~~V~~~~fs~~g~~la~g~~-dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~ 172 (489)
.....+....|+|+|+.++.... ++...++......... ......... .....+++++...++
T Consensus 80 ~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~---~~~~~~~~~~~~~~~ 143 (269)
T d2hqsa1 80 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-------------RQVTDGRSN---NTEPTWFPDSQNLAF 143 (269)
T ss_dssp CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-------------EECCCCSSC---EEEEEECTTSSEEEE
T ss_pred eeecccccceecCCCCeeeEeeecCCccceeecccccccc-------------eeeeecccc---cccccccccccccee
Confidence 34455788999999999887664 3333333332211000 000001111 344567777766666
Q ss_pred EEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCCcEEEE--ECCCCCcCce
Q 037120 173 CASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THGVVNIW--DRRVGVLPSL 249 (489)
Q Consensus 173 s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg~i~iw--d~~~~~~~~~ 249 (489)
+...+ +...+|........... ...+........|+|++. .++..+ ..+...+| |...+. .
T Consensus 144 ~~~~~-g~~~i~~~~~~~~~~~~-----------~~~~~~~~~~~~~spdg~-~~~~~~~~~~~~~i~~~~~~~~~---~ 207 (269)
T d2hqsa1 144 TSDQA-GRPQVYKVNINGGAPQR-----------ITWEGSQNQDADVSSDGK-FMVMVSSNGGQQHIAKQDLATGG---V 207 (269)
T ss_dssp EECTT-SSCEEEEEETTSSCCEE-----------CCCSSSEEEEEEECTTSS-EEEEEEECSSCEEEEEEETTTCC---E
T ss_pred ccccc-CCceEeeeeccccccee-----------eecccccccccccccccc-eeEEEeecCCceeeeEeeccccc---c
Confidence 66555 65555544222211101 122344667788999999 555444 55555554 444433 2
Q ss_pred eeccCCCCceeEEEEeecCCEEEEEeC---CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCC
Q 037120 250 ELSTGSHGTLNSIQLHAENQIIFAAGK---HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASM 313 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~p~~~~l~~~~~---dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~ 313 (489)
+. ..+........|+|||+.|+..+. ...|+++++..+.. ..+....+. +...+|+|-
T Consensus 208 ~~-~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~~g~----~~~p~WSP~ 268 (269)
T d2hqsa1 208 QV-LSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPATDGQ----VKFPAWSPY 268 (269)
T ss_dssp EE-CCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCSSSE----EEEEEECCC
T ss_pred eE-eecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCCCCc----EEeEEeCCC
Confidence 22 234556678899999999876654 45789999987553 444444555 788889883
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.14 E-value=0.00039 Score=62.20 Aligned_cols=218 Identities=11% Similarity=0.095 Sum_probs=124.2
Q ss_pred CeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC----CCeEEEEEcCCC
Q 037120 213 GLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK----HGSIYLWDLRGG 288 (489)
Q Consensus 213 ~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~----dg~i~lwd~~~~ 288 (489)
.+..++|.++|+ ++++-...+.|+.||....+ ..............++++++|+++++... .+.|...|..+.
T Consensus 41 ~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~--~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~ 117 (319)
T d2dg1a1 41 QLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKE--IKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD 117 (319)
T ss_dssp CEEEEEECTTSC-EEEEETTTCEEEEECTTTCC--EEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred CcEeCEECCCCC-EEEEECCCCEEEEEECCCCe--EEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence 456899999998 77777788999999987754 33333344567889999999988776543 334555555544
Q ss_pred cccceeecCCccCCCCeeEEEeCCCCcceee-ccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeec
Q 037120 289 RTSAPFHNHKEVCHLPLTSLKLASMLEKIGT-LKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVH 367 (489)
Q Consensus 289 ~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~-~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~ 367 (489)
............ .....+.+.++|....+ ........... -..++|++..+- .+..- +
T Consensus 118 ~~~~~~~~~~~~--~~~nd~~~d~~G~l~vtd~~~~~~~~~g~--v~~~~~dg~~~~---------~~~~~-------~- 176 (319)
T d2dg1a1 118 NLQDIIEDLSTA--YCIDDMVFDSKGGFYFTDFRGYSTNPLGG--VYYVSPDFRTVT---------PIIQN-------I- 176 (319)
T ss_dssp SCEEEECSSSSC--CCEEEEEECTTSCEEEEECCCBTTBCCEE--EEEECTTSCCEE---------EEEEE-------E-
T ss_pred eeeeeccCCCcc--cCCcceeEEeccceeecccccccccCcce--eEEEecccceeE---------EEeec-------c-
Confidence 332222211111 22677888888876543 11000000001 112333332211 01100 0
Q ss_pred CCCCCCcCCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccC
Q 037120 368 CPPPAWLSDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPL 447 (489)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 447 (489)
...+.++|.+++..+.++-+..+.|+.||+.... ....... . ........
T Consensus 177 ----------------~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g---------~~~~~~~----~-~~~~~~~~ 226 (319)
T d2dg1a1 177 ----------------SVANGIALSTDEKVLWVTETTANRLHRIALEDDG---------VTIQPFG----A-TIPYYFTG 226 (319)
T ss_dssp ----------------SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS---------SSEEEEE----E-EEEEECCS
T ss_pred ----------------ceeeeeeeccccceEEEecccCCceEEEEEcCCC---------ceecccc----c-eeeeccCC
Confidence 0013367777777777887888999999986540 1110000 0 00000011
Q ss_pred CCceEEEEeeCCCCeEEeccCcceeEEEecccccccc
Q 037120 448 SEGVTACVTHPLNNTIVAGTKNSSLLVVSQKQQCTSD 484 (489)
Q Consensus 448 ~~~V~~va~~p~~~~i~sgs~dg~i~v~~~~~~~~~~ 484 (489)
....-.+++.++|+..++...+|.|.+|+.+.+-+..
T Consensus 227 ~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l~~ 263 (319)
T d2dg1a1 227 HEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQ 263 (319)
T ss_dssp SSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEE
T ss_pred ccceeeeeEcCCCCEEEEEcCCCEEEEECCCCcEEEE
Confidence 2235679999999988888889999999988765543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.10 E-value=0.00036 Score=62.26 Aligned_cols=187 Identities=13% Similarity=0.094 Sum_probs=108.3
Q ss_pred eeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC-
Q 037120 99 ISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR- 177 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d- 177 (489)
-..++|+++|+.|.++.....|..++.+........ ... .+.. ......+++.+++. +.++-...
T Consensus 73 P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~-------~~~----~g~~--~~~pndl~~d~~G~-lyvtd~~~~ 138 (314)
T d1pjxa_ 73 PAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAK-------KDS----EGRR--MQGCNDCAFDYEGN-LWITAPAGE 138 (314)
T ss_dssp EEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCS-------BCT----TSCB--CBCCCEEEECTTSC-EEEEECBCB
T ss_pred ceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEe-------ccc----cccc--cCCCcEEEECCCCC-EEEecCccC
Confidence 457999999988887777777888888763322210 000 0000 01145689999885 66654311
Q ss_pred -----------CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCC----cEEEEEeCCCcEEEEECC
Q 037120 178 -----------SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNT----SRLIASDTHGVVNIWDRR 242 (489)
Q Consensus 178 -----------~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~----~~l~s~s~dg~i~iwd~~ 242 (489)
...=+||-+.... + ... . ...-..-+.++|+|++. .++++-+..+.|..||+.
T Consensus 139 ~~~~~~~~~~~~~~G~v~~~~~dg-~---~~~----~----~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~ 206 (314)
T d1pjxa_ 139 VAPADYTRSMQEKFGSIYCFTTDG-Q---MIQ----V----DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIK 206 (314)
T ss_dssp CTTSCCCBTTSSSCEEEEEECTTS-C---EEE----E----EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEE
T ss_pred cccccccceeccCCceEEEEeecC-c---eeE----e----eCCcceeeeeEECCCCCcceeEEEEEeecccceEEeecc
Confidence 0011333331110 1 000 0 11112457899999864 255566678889999876
Q ss_pred CCCcC----ceeecc-CCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCc
Q 037120 243 VGVLP----SLELST-GSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLE 315 (489)
Q Consensus 243 ~~~~~----~~~~~~-~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 315 (489)
..... ....+. .+......++++++|++.++....+.|.+||.+.++.+..+...... .++++|.|+++
T Consensus 207 ~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~----~t~~afg~d~~ 280 (314)
T d1pjxa_ 207 GPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEK----PSNLHFKPQTK 280 (314)
T ss_dssp ETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSC----EEEEEECTTSS
T ss_pred CccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCC----EEEEEEeCCCC
Confidence 54321 111111 12234568999999998777777899999998887766556544334 67777777664
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.05 E-value=0.00015 Score=64.87 Aligned_cols=120 Identities=10% Similarity=0.193 Sum_probs=77.8
Q ss_pred eEEEeeCCCC----CEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCC
Q 037120 159 DAVRWNLANQ----DEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHG 234 (489)
Q Consensus 159 ~~v~~~~~~~----~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg 234 (489)
..++|+|++. .++++-+.. +.|..||+... ..+...+.+......+......+++..+|+ ++++....+
T Consensus 175 NGi~~~~d~d~~~~~lyv~d~~~-~~i~~~d~~~~-----g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn-lyVa~~~~g 247 (314)
T d1pjxa_ 175 NGIAVRHMNDGRPYQLIVAETPT-KKLWSYDIKGP-----AKIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSS 247 (314)
T ss_dssp EEEEEEECTTSCEEEEEEEETTT-TEEEEEEEEET-----TEEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTT
T ss_pred eeeEECCCCCcceeEEEEEeecc-cceEEeeccCc-----cccceeeEEEEccccccccceeeEEecCCc-EEEEEcCCC
Confidence 3589988764 255555555 89999998432 112212211111111223456799999998 777777789
Q ss_pred cEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEe-CCCeEEEEEcCC
Q 037120 235 VVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAG-KHGSIYLWDLRG 287 (489)
Q Consensus 235 ~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~-~dg~i~lwd~~~ 287 (489)
.|.+||...+. ....+.......++++|.|+++.|+.+. .+|.|..+|+..
T Consensus 248 ~I~~~dp~~g~--~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 248 HIEVFGPDGGQ--PKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEECTTCBS--CSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEEeCCCCE--EEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 99999988765 3333333446788999999998666654 488898888754
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.83 E-value=0.00081 Score=58.33 Aligned_cols=95 Identities=11% Similarity=0.061 Sum_probs=62.1
Q ss_pred EEecC--CCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-C-----CeEEEEEcCCCc
Q 037120 218 AFSAV--NTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-H-----GSIYLWDLRGGR 289 (489)
Q Consensus 218 ~~~~~--~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-d-----g~i~lwd~~~~~ 289 (489)
..+|+ |+ .++-.+ ++.|.+.|+..++ .. .+..+.+.+...+|+|||+.|+.... + ..|.+++..+++
T Consensus 5 ~~sPdi~G~-~v~f~~-~~dl~~~d~~~g~--~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~ 79 (281)
T d1k32a2 5 LLNPDIHGD-RIIFVC-CDDLWEHDLKSGS--TR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE 79 (281)
T ss_dssp CEEEEEETT-EEEEEE-TTEEEEEETTTCC--EE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred ccCCCCCCC-EEEEEe-CCcEEEEECCCCC--EE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCc
Confidence 35788 88 666554 5678888999876 22 34455677889999999999886643 2 248888888776
Q ss_pred ccceeecCCc---cCCCCeeEEEeCCCCccee
Q 037120 290 TSAPFHNHKE---VCHLPLTSLKLASMLEKIG 318 (489)
Q Consensus 290 ~~~~~~~~~~---~~~~~v~~l~~~~~~~~i~ 318 (489)
... +..... ..........|+|+|+.+.
T Consensus 80 ~~~-lt~~~~~~~~~~~~~~~~~~spdg~~l~ 110 (281)
T d1k32a2 80 IKR-ITYFSGKSTGRRMFTDVAGFDPDGNLII 110 (281)
T ss_dssp EEE-CCCCCEEEETTEECSEEEEECTTCCEEE
T ss_pred eEE-eeecCCCccCccccccccccCCCCCEEE
Confidence 522 211110 0001256788999998774
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.58 E-value=0.0088 Score=52.30 Aligned_cols=185 Identities=16% Similarity=0.034 Sum_probs=111.1
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
..+.++++.++|.++++ +.+ .|.++|..+.+..... . .........+..+.+.|++. +.++...
T Consensus 59 ~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~------------~-~~~~~~~~~~nd~~vd~~G~-iw~~~~~ 122 (295)
T d2ghsa1 59 FMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHA------------E-LESDLPGNRSNDGRMHPSGA-LWIGTMG 122 (295)
T ss_dssp SCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEE------------C-SSTTCTTEEEEEEEECTTSC-EEEEEEE
T ss_pred CCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEe------------e-eecCCCcccceeeEECCCCC-EEEEecc
Confidence 35889999999987765 455 4888998874432210 0 00111122377788999985 5444332
Q ss_pred C---CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCc-----C-
Q 037120 177 R---SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVL-----P- 247 (489)
Q Consensus 177 d---~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-----~- 247 (489)
+ .+.-.+|.+..+ ....... .-..-+.++|+++++.++++-+..+.|..+++..... .
T Consensus 123 ~~~~~~~g~l~~~~~g-----~~~~~~~--------~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~ 189 (295)
T d2ghsa1 123 RKAETGAGSIYHVAKG-----KVTKLFA--------DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAE 189 (295)
T ss_dssp TTCCTTCEEEEEEETT-----EEEEEEE--------EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCE
T ss_pred ccccccceeEeeecCC-----cEEEEee--------ccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceE
Confidence 1 123455655222 1111011 1124578999999985666777888999998753211 1
Q ss_pred ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeC-CCCc
Q 037120 248 SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLA-SMLE 315 (489)
Q Consensus 248 ~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~-~~~~ 315 (489)
......+..+....++++.+|++.++.-..+.|..||. .|+.+..+...... +++++|- ++.+
T Consensus 190 ~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~----~T~~~FGG~d~~ 253 (295)
T d2ghsa1 190 VFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQ----TTCPAFIGPDAS 253 (295)
T ss_dssp EEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSB----EEEEEEESTTSC
T ss_pred EEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCc----eEEEEEeCCCCC
Confidence 11112233456778999999987777667889999995 57777776654334 7788775 4443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.31 E-value=0.0043 Score=53.47 Aligned_cols=111 Identities=8% Similarity=0.042 Sum_probs=64.2
Q ss_pred EeeCC--CCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe-CCC----
Q 037120 162 RWNLA--NQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD-THG---- 234 (489)
Q Consensus 162 ~~~~~--~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s-~dg---- 234 (489)
..+|+ |+.++++ + +|.|.+.|+..+ ++ .. +..+...+...+|+|||+ .|+... .++
T Consensus 5 ~~sPdi~G~~v~f~-~--~~dl~~~d~~~g--~~-~~----------Lt~~~~~~~~p~~SPDG~-~iaf~~~~~~~~~~ 67 (281)
T d1k32a2 5 LLNPDIHGDRIIFV-C--CDDLWEHDLKSG--ST-RK----------IVSNLGVINNARFFPDGR-KIAIRVMRGSSLNT 67 (281)
T ss_dssp CEEEEEETTEEEEE-E--TTEEEEEETTTC--CE-EE----------EECSSSEEEEEEECTTSS-EEEEEEEESTTCCE
T ss_pred ccCCCCCCCEEEEE-e--CCcEEEEECCCC--CE-EE----------EecCCCcccCEEECCCCC-EEEEEEeeCCCCCc
Confidence 45688 8755444 4 377888888432 21 11 123445678899999999 666443 222
Q ss_pred -cEEEEECCCCCcCceeec----cCCCCceeEEEEeecCCEEEEEeC------CCeEEEEEcCCCc
Q 037120 235 -VVNIWDRRVGVLPSLELS----TGSHGTLNSIQLHAENQIIFAAGK------HGSIYLWDLRGGR 289 (489)
Q Consensus 235 -~i~iwd~~~~~~~~~~~~----~~h~~~v~~~~~~p~~~~l~~~~~------dg~i~lwd~~~~~ 289 (489)
.|.+++...++...+... ...........|+|+|+.++.... ...+...+...+.
T Consensus 68 ~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 133 (281)
T d1k32a2 68 ADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGIN 133 (281)
T ss_dssp EEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTE
T ss_pred eEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCce
Confidence 477778777652211110 011234567899999999887643 2235555655443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.31 E-value=0.044 Score=47.59 Aligned_cols=213 Identities=6% Similarity=-0.024 Sum_probs=113.5
Q ss_pred eEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCccccee
Q 037120 215 SDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPF 294 (489)
Q Consensus 215 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~ 294 (489)
.+..|.+.+..++.+--..+.|.-||..+++.... .....+.++++.++|.++++ +.+ -|.++|..+++.....
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~----~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~ 94 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKTVH----ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHA 94 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE----ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEE
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEE----ECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEe
Confidence 34678876663555444778999999988753222 22457889999999877665 444 5889999987642211
Q ss_pred ecCCccCCCCeeEEEeCCCCcceeeccccceeeccceeEEEeCCCCCeEEEEEecCCceEEEEeeccceeeecCCCCCCc
Q 037120 295 HNHKEVCHLPLTSLKLASMLEKIGTLKAQSKIVSQEIHSIDLDPSCSYQLAFHLDDGWSGVLDVYNSRVSHVHCPPPAWL 374 (489)
Q Consensus 295 ~~~~~~~~~~v~~l~~~~~~~~i~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~ 374 (489)
..........++.+.+.|+|....+.... ...... ..+.....+....+.. ..
T Consensus 95 ~~~~~~~~~~~nd~~vd~~G~iw~~~~~~-------------~~~~~~----------g~l~~~~~g~~~~~~~---~~- 147 (295)
T d2ghsa1 95 ELESDLPGNRSNDGRMHPSGALWIGTMGR-------------KAETGA----------GSIYHVAKGKVTKLFA---DI- 147 (295)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEET-------------TCCTTC----------EEEEEEETTEEEEEEE---EE-
T ss_pred eeecCCCcccceeeEECCCCCEEEEeccc-------------cccccc----------eeEeeecCCcEEEEee---cc-
Confidence 11111101225667777777654321100 000000 0111111221111110 00
Q ss_pred CCCCccccccCCCcceeecCCcEEEEeecCCCcEEEEeccCCCCCCeeeccCcccchhhHhhhhcccCCcccCCCceEEE
Q 037120 375 SDSNNSADQLHLRKPSWLSTNSIYAVGSSSDHGIHLLDFFPGSSSPSHVDYNEDIESLSERTKLKKENRFVPLSEGVTAC 454 (489)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 454 (489)
.....++|++++..++++-+..+.|+.+++........ .......... +-.+..-.+
T Consensus 148 ---------~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~--~~~~~~~~~~------------~~~g~pdG~ 204 (295)
T d2ghsa1 148 ---------SIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPT--GKAEVFIDST------------GIKGGMDGS 204 (295)
T ss_dssp ---------SSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBS--SCCEEEEECT------------TSSSEEEEE
T ss_pred ---------CCcceeeecCCCceEEEeecccceeeEeeecccccccc--cceEEEeccC------------cccccccce
Confidence 00123567777788888888889999998854310000 0000000011 233456777
Q ss_pred EeeCCCCeEEeccCcceeEEEeccccccc
Q 037120 455 VTHPLNNTIVAGTKNSSLLVVSQKQQCTS 483 (489)
Q Consensus 455 a~~p~~~~i~sgs~dg~i~v~~~~~~~~~ 483 (489)
++..++++.++.-..|.|..|..+.+-+.
T Consensus 205 ~vD~~GnlWva~~~~g~V~~~dp~G~~~~ 233 (295)
T d2ghsa1 205 VCDAEGHIWNARWGEGAVDRYDTDGNHIA 233 (295)
T ss_dssp EECTTSCEEEEEETTTEEEEECTTCCEEE
T ss_pred EEcCCCCEEeeeeCCCceEEecCCCcEee
Confidence 88888887776666677888876665444
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.22 E-value=0.057 Score=48.65 Aligned_cols=161 Identities=12% Similarity=0.024 Sum_probs=87.3
Q ss_pred EEEECCCCcEEEEEecCC-----------eEEEEeCCCcccccCCCCCCCCCccccccc-ccCCCCCCceeEEEeeCCCC
Q 037120 101 ALDFDCKGIYLVSATRSG-----------CLTVHDFESLYYQCNGTLPGVGLKEDQSKH-LLHIPLPQQLDAVRWNLANQ 168 (489)
Q Consensus 101 ~~~fs~~g~~la~g~~dg-----------~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~-~~h~~~~~~V~~v~~~~~~~ 168 (489)
......+|++++.|+.+. .+.+||..+..-... ... ..|... ..+.++.+++.
T Consensus 24 ~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~------------~~~~~~~~~~---~~~~~~~~~g~ 88 (387)
T d1k3ia3 24 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDR------------TVTVTKHDMF---CPGISMDGNGQ 88 (387)
T ss_dssp EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCC------------EEEECSCCCS---SCEEEECTTSC
T ss_pred EEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeec------------CCCCCCcccc---eeEEEEecCCc
Confidence 334457889888888531 367899987432221 000 111111 33467888875
Q ss_pred CEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCC------CcEEEEECC
Q 037120 169 DEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTH------GVVNIWDRR 242 (489)
Q Consensus 169 ~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~d------g~i~iwd~~ 242 (489)
+++.|+.+...+.+||....... .... +. ....-...+..+++. +++.++.+ ..+.+||..
T Consensus 89 -i~v~Gg~~~~~~~~yd~~~~~w~------~~~~----~~-~~r~~~~~~~~~dG~-v~v~GG~~~~~~~~~~v~~yd~~ 155 (387)
T d1k3ia3 89 -IVVTGGNDAKKTSLYDSSSDSWI------PGPD----MQ-VARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPS 155 (387)
T ss_dssp -EEEECSSSTTCEEEEEGGGTEEE------ECCC----CS-SCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETT
T ss_pred -EEEeecCCCcceeEecCccCccc------cccc----cc-ccccccceeeecCCc-eeeeccccccccccceeeeecCC
Confidence 77777655579999998543211 1110 01 111234566777888 77777643 368999998
Q ss_pred CCCcCceeec-------cCCCC-----ceeEEEEeecCCEEEEEeCCCeEEEEEcCCCc
Q 037120 243 VGVLPSLELS-------TGSHG-----TLNSIQLHAENQIIFAAGKHGSIYLWDLRGGR 289 (489)
Q Consensus 243 ~~~~~~~~~~-------~~h~~-----~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~ 289 (489)
+.+...+... ..+.. .-..+..-++|+.++.++.++.+.++|..+..
T Consensus 156 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~ 214 (387)
T d1k3ia3 156 SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGD 214 (387)
T ss_dssp TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCE
T ss_pred CCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCc
Confidence 7643211000 00110 01112334567766666667777777766543
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=95.71 E-value=0.6 Score=40.93 Aligned_cols=171 Identities=10% Similarity=0.080 Sum_probs=92.1
Q ss_pred eeEEEECCCCcEEEEEec------------CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEe--e
Q 037120 99 ISALDFDCKGIYLVSATR------------SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRW--N 164 (489)
Q Consensus 99 V~~~~fs~~g~~la~g~~------------dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~--~ 164 (489)
--.|+..|+|..+++++. .|.|.++|+.+........ ..... .+........+ +.. .
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l-----~~~~~-~~~~~~f~PhG---i~l~~~ 107 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-----EIIGN-TLDISSFNPHG---ISTFID 107 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEEC-----EEECS-SSCGGGCCEEE---EEEEEC
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEE-----EecCC-CCCCcceeccc---eeEEEc
Confidence 335677889877766542 4899999987633222110 00000 00000011112 332 4
Q ss_pred CCCCCEEEEEec--CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe--C-C------
Q 037120 165 LANQDEVACAST--RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD--T-H------ 233 (489)
Q Consensus 165 ~~~~~~l~s~~~--d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s--~-d------ 233 (489)
+++...|+.... ...+|.+|++..... .+....+.. .......++|++..++. +++|-. . +
T Consensus 108 ~dg~~~L~vvnH~~~~~~ieif~~~~~~~----~l~~~~~v~---~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~ 179 (340)
T d1v04a_ 108 DDNTVYLLVVNHPGSSSTVEVFKFQEEEK----SLLHLKTIR---HKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSW 179 (340)
T ss_dssp TTCCEEEEEEECSTTCCEEEEEEEETTTT----EEEEEEEEC---CTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHH
T ss_pred CCCcEEEEEEeccCCCceeEEEEEeCCCC----eEEEEeecC---CccccCccceEEecCCC-EEEecCccCcChhhhhh
Confidence 455545555431 136899999854321 222222211 22334678999999887 777632 1 1
Q ss_pred ------CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCc
Q 037120 234 ------GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGR 289 (489)
Q Consensus 234 ------g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~ 289 (489)
+...+|....++ .+.....-...+.|+++|++++|+++.. .+.|+.|++....
T Consensus 180 e~~~~~~~g~v~~~~~~~---~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~ 239 (340)
T d1v04a_ 180 EMHLGLAWSFVTYYSPND---VRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANW 239 (340)
T ss_dssp HHHTTCCCEEEEEECSSC---EEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred hHhhcCCceeEEEEcCCc---eEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence 233444444333 1122222356789999999999888866 8899999987543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.08 E-value=0.78 Score=38.43 Aligned_cols=132 Identities=11% Similarity=0.072 Sum_probs=80.1
Q ss_pred EEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCce
Q 037120 170 EVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSL 249 (489)
Q Consensus 170 ~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 249 (489)
+|++.. +.|+-.++.......... .... ..+...+..++|.+..+.++.+-..++.|+..++.......+
T Consensus 4 Ll~s~~---~~I~~~~ld~~~~~~~~~---~~~~----~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v 73 (263)
T d1npea_ 4 LLFAQT---GKIERLPLERNTMKKTEA---KAFL----HIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI 73 (263)
T ss_dssp EEEEEE---EEEEEEEESSSCBCGGGC---EEEE----EEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE
T ss_pred EEEeCC---CeEEEEECCCcccccccc---cccc----ccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEE
Confidence 455544 688888884332211010 0101 222335778999988874555555778899999876553222
Q ss_pred eeccCCCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcce
Q 037120 250 ELSTGSHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKI 317 (489)
Q Consensus 250 ~~~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i 317 (489)
.......+..++++.-+..|+.+.. .+.|.+.++........+...... ...++++|...++
T Consensus 74 --~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~----p~~l~vdp~~g~l 136 (263)
T d1npea_ 74 --IRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVN----PRGIVTDPVRGNL 136 (263)
T ss_dssp --ECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSS----EEEEEEETTTTEE
T ss_pred --EEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccC----CcEEEEecccCcE
Confidence 2222356789999987887776655 789999998865432222222233 7888888877655
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.68 E-value=1.1 Score=38.00 Aligned_cols=128 Identities=13% Similarity=0.148 Sum_probs=78.2
Q ss_pred EEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecCCCEE
Q 037120 102 LDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTRSNVV 181 (489)
Q Consensus 102 ~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d~g~i 181 (489)
.-.+|..+.||.-+ ..++.|||+++....... .+.. . |.--.|-.+. .|+-.. +..|
T Consensus 68 AIMhP~~~IiALra-g~~LQiFnletK~klks~------~~~e---------~---VvfWkWis~~--~L~lVT--~taV 124 (327)
T d1utca2 68 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAH------TMTD---------D---VTFWKWISLN--TVALVT--DNAV 124 (327)
T ss_dssp EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEE------ECSS---------C---CCEEEESSSS--EEEEEC--SSEE
T ss_pred hhcCCCCcEEEEec-CCeEEEEehhHhhhhceE------EcCC---------C---cEEEEecCCC--EEEEEc--CCce
Confidence 34688888888876 568999999985544421 0111 1 6667887664 566666 4699
Q ss_pred EEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEe---C----CCcEEEEECCCCCcCceeeccC
Q 037120 182 SIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASD---T----HGVVNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 182 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s---~----dg~i~iwd~~~~~~~~~~~~~~ 254 (489)
.-|++.. ...|.+.+.....+ ....|-.-..+++.+ .++-.+ . .|.+.+|..+.. .-+.+.+
T Consensus 125 YHW~~~g-~s~P~k~fdR~~~L------~~~QIInY~~d~~~k-W~~l~GI~~~~~~i~G~mQLYS~er~---~sQ~ieG 193 (327)
T d1utca2 125 YHWSMEG-ESQPVKMFDRHSSL------AGCQIINYRTDAKQK-WLLLTGISAQQNRVVGAMQLYSVDRK---VSQPIEG 193 (327)
T ss_dssp EEEESSS-SCCCEEEEECCGGG------TTCEEEEEEECTTSC-EEEEEEEEEETTEEEEEEEEEETTTT---EEEEECC
T ss_pred EEEcccC-CCCchhhhhhcccc------cCceEEEEEECCCCC-EEEEEeEecCCCceeEEEEEEEeccC---cCccccc
Confidence 9999943 33554544333221 234666667777777 544433 2 356788988764 3445667
Q ss_pred CCCceeEEE
Q 037120 255 SHGTLNSIQ 263 (489)
Q Consensus 255 h~~~v~~~~ 263 (489)
|-+....+.
T Consensus 194 haa~F~~~~ 202 (327)
T d1utca2 194 HAASFAQFK 202 (327)
T ss_dssp SEEEEEEEC
T ss_pred eeeeeEEEE
Confidence 755444443
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=94.64 E-value=0.32 Score=43.58 Aligned_cols=31 Identities=13% Similarity=0.218 Sum_probs=26.8
Q ss_pred eeEEEEeecCCEEEEEeC-CCeEEEEEcCCCc
Q 037120 259 LNSIQLHAENQIIFAAGK-HGSIYLWDLRGGR 289 (489)
Q Consensus 259 v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~ 289 (489)
...+.++|||+++++++. +.++.++|+++..
T Consensus 277 PHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~ 308 (459)
T d1fwxa2 277 PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFD 308 (459)
T ss_dssp CCCEEECTTSSEEEEECTTSSBEEEEEGGGHH
T ss_pred CCceEECCCCCEEEEeCCcCCcEEEEEehhhh
Confidence 456899999999999988 9999999998643
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.69 E-value=2.1 Score=37.72 Aligned_cols=189 Identities=15% Similarity=0.084 Sum_probs=98.8
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
..+-++.++..-+|++|+.++ +.|............. ............. .|..++|+.+ .++...
T Consensus 38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~-----~~~~~~~~~~~ip---~v~~vafs~d---~l~v~~-- 103 (381)
T d1xipa_ 38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSD-----STPLTFKWEKEIP---DVIFVCFHGD---QVLVST-- 103 (381)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSS-----SCCCCCSEEEECT---TEEEEEEETT---EEEEEE--
T ss_pred ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhcc-----CCCCcceeccCCC---CeEEEEeeCC---EEEEEe--
Confidence 366778888877888888885 6677665432211100 0000011111111 2888999865 344444
Q ss_pred CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceee---ccC
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLEL---STG 254 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~ 254 (489)
++.+..++...-. ...... .-...+..+.++|. .++....++.+.++++..++...+.. -..
T Consensus 104 ~~~l~~~~~~~l~-----~~~~~~-------~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~ 168 (381)
T d1xipa_ 104 RNALYSLDLEELS-----EFRTVT-------SFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQLAQNVTSFD 168 (381)
T ss_dssp SSEEEEEESSSTT-----CEEEEE-------ECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEEEESEEEEE
T ss_pred CCCEEEEEeeccc-----cccccc-------cccccccceecCCc---eeEEEecCCCEEEEEeccCccccccCCcceEE
Confidence 3788888883221 111111 11236777777763 56667778999999998875221110 001
Q ss_pred CCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCcceee
Q 037120 255 SHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLEKIGT 319 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~i~~ 319 (489)
-.+.+.+++|++.|..++++..++.-.--++.....+......... |.++.|-.+..+++.
T Consensus 169 ~~~~~~~v~ws~kgkq~v~~~g~~~q~k~~i~~~~~~~~p~~~~~~----v~sI~WL~~~~F~vv 229 (381)
T d1xipa_ 169 VTNSQLAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYS----PLSVTILSPQDFLAV 229 (381)
T ss_dssp ECSSEEEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSE----EEEEEESSSSEEEEE
T ss_pred ecCCceEEEEeCCcEEEEEeCCCceeeccCCCCccccCCCcCCCcc----eeEEEEecCceEEEE
Confidence 1355677777777777776643321111122221111111111223 788888877666543
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.12 E-value=2 Score=35.75 Aligned_cols=160 Identities=8% Similarity=-0.034 Sum_probs=94.0
Q ss_pred ceeEEEECCCCcEEEEEe-cCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEec
Q 037120 98 GISALDFDCKGIYLVSAT-RSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAST 176 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~-~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~ 176 (489)
.+.+++|++..+.|.-.. .++.|+..+++....... ... .... +.++++...+..+..+-..
T Consensus 37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v--------~~~------~~~~---p~~iAvD~~~~~lY~~d~~ 99 (263)
T d1npea_ 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI--------IRQ------DLGS---PEGIALDHLGRTIFWTDSQ 99 (263)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE--------ECT------TCCC---EEEEEEETTTTEEEEEETT
T ss_pred cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEE--------EEe------cccc---ccEEEEeccCCeEEEeccC
Confidence 377899998877665554 467888888875222110 000 0112 6778888766656666555
Q ss_pred CCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCc--EEEEECCCCCcCceeeccC
Q 037120 177 RSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGV--VNIWDRRVGVLPSLELSTG 254 (489)
Q Consensus 177 d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~--i~iwd~~~~~~~~~~~~~~ 254 (489)
. +.|.+.++..... ..+. .........+++.|....++.+-...+. |.--++..... ......
T Consensus 100 ~-~~I~~~~~dg~~~---~~l~---------~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~--~~i~~~ 164 (263)
T d1npea_ 100 L-DRIEVAKMDGTQR---RVLF---------DTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR--RILAQD 164 (263)
T ss_dssp T-TEEEEEETTSCSC---EEEE---------CSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC--EEEECT
T ss_pred C-CEEEEEecCCceE---EEEe---------cccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc--eeeeee
Confidence 5 8999999843211 1111 1122467899999988834444333233 44345543331 112222
Q ss_pred CCCceeEEEEeecCCEEEEEeC-CCeEEEEEcCCCc
Q 037120 255 SHGTLNSIQLHAENQIIFAAGK-HGSIYLWDLRGGR 289 (489)
Q Consensus 255 h~~~v~~~~~~p~~~~l~~~~~-dg~i~lwd~~~~~ 289 (489)
.-.....+++++.++.|+.+.. .+.|...|+....
T Consensus 165 ~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~ 200 (263)
T d1npea_ 165 NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPG 200 (263)
T ss_dssp TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEE
T ss_pred cccccceEEEeecCcEEEEEeCCCCEEEEEECCCCC
Confidence 2345678999998888877744 7888888887543
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.81 E-value=2.2 Score=35.49 Aligned_cols=169 Identities=8% Similarity=-0.044 Sum_probs=96.7
Q ss_pred CceeEEEECCCCcEEE-EEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEe
Q 037120 97 PGISALDFDCKGIYLV-SATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACAS 175 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la-~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~ 175 (489)
..+..+++++.+..|. +-...+.|.+.+++....... . ...... ...++..|....++.+..
T Consensus 77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~--------~------~~~~~~---P~~l~vd~~~g~ly~~~~ 139 (266)
T d1ijqa1 77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL--------F------RENGSK---PRAIVVDPVHGFMYWTDW 139 (266)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEE--------E------ECTTCC---EEEEEEETTTTEEEEEEC
T ss_pred CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEE--------E------cCCCCC---cceEEEEcccCeEEEecc
Confidence 3467889987655554 445577899999886332110 0 111112 567899887655666544
Q ss_pred cCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCCCcCceeeccCC
Q 037120 176 TRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVGVLPSLELSTGS 255 (489)
Q Consensus 176 ~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~h 255 (489)
...+.|.-.++.. ... ..+. ...-...+++++.+.+..++.+-...+.|...|+.......+......
T Consensus 140 ~~~~~I~r~~~dG--s~~-~~l~---------~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~ 207 (266)
T d1ijqa1 140 GTPAKIKKGGLNG--VDI-YSLV---------TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKR 207 (266)
T ss_dssp SSSCEEEEEETTS--CCE-EEEE---------CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTT
T ss_pred CCCcceeEeccCC--Cce-eccc---------ccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCc
Confidence 2225566655521 111 1111 112235678999988874455546778999999876442222111122
Q ss_pred CCceeEEEEeecCCEEEEEe-CCCeEEEEEcCCCcccceeec
Q 037120 256 HGTLNSIQLHAENQIIFAAG-KHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 256 ~~~v~~~~~~p~~~~l~~~~-~dg~i~lwd~~~~~~~~~~~~ 296 (489)
......+++. +.+|+.+. .++.|+..+..+++....+..
T Consensus 208 ~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~~ 247 (266)
T d1ijqa1 208 LAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAE 247 (266)
T ss_dssp TSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred ccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEEEc
Confidence 2234566665 55666665 488898889888776555543
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.29 E-value=2.8 Score=35.34 Aligned_cols=163 Identities=13% Similarity=0.118 Sum_probs=88.6
Q ss_pred CceeEEEECCCCcEEEEEec-------CCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEe--eCCC
Q 037120 97 PGISALDFDCKGIYLVSATR-------SGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRW--NLAN 167 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~-------dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~--~~~~ 167 (489)
..|..-..++++++++..+- .|.+.+|..+....+. +++|... ...+.. ++..
T Consensus 148 ~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~---------ieGhaa~---------F~~~~~~g~~~~ 209 (327)
T d1utca2 148 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP---------IEGHAAS---------FAQFKMEGNAEE 209 (327)
T ss_dssp CEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEE---------ECCSEEE---------EEEECCTTCSSC
T ss_pred ceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCcc---------ccceeee---------eEEEEcCCCCCC
Confidence 34777778888888876542 5778999998855444 3333221 111111 1111
Q ss_pred CCEEEEEec--CCCEEEEEEeccCCC-CCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEEEECCCC
Q 037120 168 QDEVACAST--RSNVVSIYDIGYISD-EPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNIWDRRVG 244 (489)
Q Consensus 168 ~~~l~s~~~--d~g~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 244 (489)
..+++-+.. ..++++|-++..... .+....+....+ .+...-.+---++..++... .++.-+.-|.|++||+.++
T Consensus 210 ~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~-fppea~~DFPvamqvs~kyg-iiyviTK~G~i~lyDleTg 287 (327)
T d1utca2 210 STLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVF-FPPEAQNDFPVAMQISEKHD-VVFLITKYGYIHLYDLETG 287 (327)
T ss_dssp EEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECC-CCTTCTTCCEEEEEEETTTT-EEEEEETTSEEEEEETTTC
T ss_pred ceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEE-CCccccCCcEEEEEeeccCC-EEEEEecCcEEEEEEcccc
Confidence 112222221 126899999965322 111111111111 00112234456778888777 8888999999999999998
Q ss_pred CcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEE
Q 037120 245 VLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIY 281 (489)
Q Consensus 245 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~ 281 (489)
. ++....--...|...+-+.+..-+++...+|.|.
T Consensus 288 t--~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl 322 (327)
T d1utca2 288 T--CIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL 322 (327)
T ss_dssp C--EEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred c--EEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence 8 5433222245565555555544555555666654
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=90.52 E-value=3 Score=39.21 Aligned_cols=61 Identities=13% Similarity=0.202 Sum_probs=40.2
Q ss_pred CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeecC
Q 037120 234 GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHNH 297 (489)
Q Consensus 234 g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~~ 297 (489)
|.+.-||+.+++.. .+... ..+...-.+.-.+.++|+|+.||.++.+|.++|+.+-.+...
T Consensus 457 G~l~AiD~~tGk~~-W~~~~--~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~ 517 (573)
T d1kb0a2 457 GRLLAWDPVAQKAA-WSVEH--VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTG 517 (573)
T ss_dssp EEEEEEETTTTEEE-EEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred ccEEEeCCCCCceE-eeecC--CCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECC
Confidence 45777787776532 21111 122222223446888999888999999999999998777643
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.39 E-value=4.1 Score=33.73 Aligned_cols=145 Identities=10% Similarity=0.054 Sum_probs=82.6
Q ss_pred eeEEEeeCCCCCEEEEEecCCCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEE
Q 037120 158 LDAVRWNLANQDEVACASTRSNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVN 237 (489)
Q Consensus 158 V~~v~~~~~~~~~l~s~~~d~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~ 237 (489)
+.+++|++....++.+-..+ +.|.-.++....... . ..... ......+..+++.+.+.++.++-...+.|.
T Consensus 32 ~~~id~d~~~~~lYw~D~~~-~~I~~~~l~~~~~~~--~---~~~~~---~~~~~~p~glAvD~~~~~lY~~d~~~~~I~ 102 (266)
T d1ijqa1 32 VVALDTEVASNRIYWSDLSQ-RMICSTQLDRAHGVS--S---YDTVI---SRDIQAPDGLAVDWIHSNIYWTDSVLGTVS 102 (266)
T ss_dssp EEEEEEETTTTEEEEEETTT-TEEEEEEC-------------CEEEE---CSSCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred eEEEEEEeCCCEEEEEECCC-CEEEEEEecCCCCCc--c---eEEEE---eCCCCCcceEEEeeccceEEEEecCCCEEE
Confidence 77899998876565554444 788877764321111 0 11110 112235667888877775666666788999
Q ss_pred EEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeC--CCeEEEEEcCCCcccceeecCCccCCCCeeEEEeCCCCc
Q 037120 238 IWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGK--HGSIYLWDLRGGRTSAPFHNHKEVCHLPLTSLKLASMLE 315 (489)
Q Consensus 238 iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~--dg~i~lwd~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~ 315 (489)
+.++.... ..............++++|...+++.+.. .+.|.-.++............-.. .+++++.+.+.
T Consensus 103 v~~~~g~~--~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~----p~gl~iD~~~~ 176 (266)
T d1ijqa1 103 VADTKGVK--RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQW----PNGITLDLLSG 176 (266)
T ss_dssp EEETTSSS--EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSC----EEEEEEETTTT
T ss_pred eEecCCce--EEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccce----eeEEEeecccc
Confidence 99988654 22223333456789999997777776643 556777776543322112111122 46666666554
Q ss_pred ce
Q 037120 316 KI 317 (489)
Q Consensus 316 ~i 317 (489)
.+
T Consensus 177 ~l 178 (266)
T d1ijqa1 177 RL 178 (266)
T ss_dssp EE
T ss_pred EE
Confidence 43
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=88.43 E-value=7.4 Score=35.02 Aligned_cols=33 Identities=15% Similarity=-0.008 Sum_probs=26.7
Q ss_pred CceeEEEECCCCcEEEEEecCCeEEEEeCCCcc
Q 037120 97 PGISALDFDCKGIYLVSATRSGCLTVHDFESLY 129 (489)
Q Consensus 97 ~~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~ 129 (489)
..-++|+|.|+|++|++--..|.|++++..+..
T Consensus 27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~ 59 (450)
T d1crua_ 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGS 59 (450)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred CCceEEEEeCCCeEEEEEecCCEEEEEECCCCc
Confidence 346799999999988877568999999877643
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=86.85 E-value=8.9 Score=33.15 Aligned_cols=73 Identities=16% Similarity=0.250 Sum_probs=47.7
Q ss_pred EEEEecCCCcEEEEEeCCC-----------cEEEEECCCCCcCceee-ccCCCCceeEEEEeecCCEEEEEeC-CCeEEE
Q 037120 216 DLAFSAVNTSRLIASDTHG-----------VVNIWDRRVGVLPSLEL-STGSHGTLNSIQLHAENQIIFAAGK-HGSIYL 282 (489)
Q Consensus 216 ~~~~~~~~~~~l~s~s~dg-----------~i~iwd~~~~~~~~~~~-~~~h~~~v~~~~~~p~~~~l~~~~~-dg~i~l 282 (489)
......+++ +++.|+.+. .+.+||..+++...... ...|.......++.+++.+++.|+. ...+.+
T Consensus 24 ~a~~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~ 102 (387)
T d1k3ia3 24 AAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 102 (387)
T ss_dssp EEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred EEEEeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeE
Confidence 333445666 777777421 37799999876442211 2233334456788899999888876 468999
Q ss_pred EEcCCCc
Q 037120 283 WDLRGGR 289 (489)
Q Consensus 283 wd~~~~~ 289 (489)
||..+..
T Consensus 103 yd~~~~~ 109 (387)
T d1k3ia3 103 YDSSSDS 109 (387)
T ss_dssp EEGGGTE
T ss_pred ecCccCc
Confidence 9998754
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=86.55 E-value=9.2 Score=33.01 Aligned_cols=73 Identities=7% Similarity=0.127 Sum_probs=47.5
Q ss_pred CeeEEEE--ecC-CCcEEEEEeCCCcEEEEECCCCCc---C--ceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEE
Q 037120 213 GLSDLAF--SAV-NTSRLIASDTHGVVNIWDRRVGVL---P--SLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWD 284 (489)
Q Consensus 213 ~v~~~~~--~~~-~~~~l~s~s~dg~i~iwd~~~~~~---~--~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd 284 (489)
.+..+++ ++. +..+++....+|.+..|.+..... . .++.+ .-...+..|.++.....|+.+-.+.-|..++
T Consensus 129 ~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f-~~~~q~EGCVvDde~~~LyisEE~~Giw~~~ 207 (353)
T d1h6la_ 129 EVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAF-KMNSQTEGMAADDEYGSLYIAEEDEAIWKFS 207 (353)
T ss_dssp SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEE-ECSSCEEEEEEETTTTEEEEEETTTEEEEEE
T ss_pred cceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeecc-CCCCccceEEEeCCCCcEEEecCccceEEEE
Confidence 4677777 554 333456666889988887643221 1 22222 3346788999999999999998776666666
Q ss_pred cC
Q 037120 285 LR 286 (489)
Q Consensus 285 ~~ 286 (489)
..
T Consensus 208 a~ 209 (353)
T d1h6la_ 208 AE 209 (353)
T ss_dssp SS
T ss_pred ec
Confidence 54
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=86.15 E-value=5.2 Score=34.56 Aligned_cols=29 Identities=10% Similarity=0.074 Sum_probs=23.8
Q ss_pred cceeecCCcEEEEeecCCCcEEEEeccCC
Q 037120 388 KPSWLSTNSIYAVGSSSDHGIHLLDFFPG 416 (489)
Q Consensus 388 ~~~~~~~~~~~l~sgs~d~~i~vwd~~~~ 416 (489)
.++++|++..++++-+..+.|++|++...
T Consensus 210 GI~~s~d~~~lyVa~t~~~~i~~y~~~~~ 238 (340)
T d1v04a_ 210 GINISPDGKYVYIAELLAHKIHVYEKHAN 238 (340)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred eeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence 46677777888898889999999999754
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=85.39 E-value=8.5 Score=35.90 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=41.4
Q ss_pred CCCcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeec
Q 037120 232 THGVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 232 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
..|.|.-+|+.+++.. .+... ..+..+-.+.-.+.++++|+.||.++.+|.++|+.+-.+..
T Consensus 442 ~~G~l~AiD~~TG~~~-W~~~~--~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l 503 (571)
T d2ad6a1 442 EMGQIRAFDLTTGKAK-WTKWE--KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp CCEEEEEECTTTCCEE-EEEEE--SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CcccEEEeccCCCcee-eEcCC--CCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEEC
Confidence 3478889999988733 22211 11222222334577888888899999999999999776653
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.00 E-value=12 Score=32.75 Aligned_cols=142 Identities=13% Similarity=0.039 Sum_probs=73.4
Q ss_pred ceeEEEECCCCcEEEEEecCCeEEEEeCCCcccccCCCCCCCCCcccccccccCCCCCCceeEEEeeCCCCCEEEEEecC
Q 037120 98 GISALDFDCKGIYLVSATRSGCLTVHDFESLYYQCNGTLPGVGLKEDQSKHLLHIPLPQQLDAVRWNLANQDEVACASTR 177 (489)
Q Consensus 98 ~V~~~~fs~~g~~la~g~~dg~i~vwd~~~~~~~~~~~~~~~g~~~~~~~~~~h~~~~~~V~~v~~~~~~~~~l~s~~~d 177 (489)
.|..++|+.+ .|+.. .++.+.+++......... .... . ..+..+.++|.. .++... +
T Consensus 88 ~v~~vafs~d--~l~v~-~~~~l~~~~~~~l~~~~~--------~~~~------~---~~~~~~~~~p~~--~~l~~~-~ 144 (381)
T d1xipa_ 88 DVIFVCFHGD--QVLVS-TRNALYSLDLEELSEFRT--------VTSF------E---KPVFQLKNVNNT--LVILNS-V 144 (381)
T ss_dssp TEEEEEEETT--EEEEE-ESSEEEEEESSSTTCEEE--------EEEC------S---SCEEEEEECSSE--EEEEET-T
T ss_pred CeEEEEeeCC--EEEEE-eCCCEEEEEeeccccccc--------cccc------c---ccccceecCCce--eEEEec-C
Confidence 4888999755 45554 455688888776221110 0000 1 117778888863 444444 4
Q ss_pred CCEEEEEEeccCCCCCceeeeeceeeeeecCCcccCeeEEEEecCCCcEEEEEeCCCcEEE-EECCCCCcCceeeccCCC
Q 037120 178 SNVVSIYDIGYISDEPVEVLKTRRSVTVVGSDVQKGLSDLAFSAVNTSRLIASDTHGVVNI-WDRRVGVLPSLELSTGSH 256 (489)
Q Consensus 178 ~g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~s~dg~i~i-wd~~~~~~~~~~~~~~h~ 256 (489)
|.+.++++...... ........+ .-...+.+++|++.+. .++++..++ ..+ -++.... .+.......
T Consensus 145 -~~~~~~~l~~~~~~--~~~~~v~~~-----~~~~~~~~v~ws~kgk-q~v~~~g~~-~q~k~~i~~~~--~~~~p~~~~ 212 (381)
T d1xipa_ 145 -NDLSALDLRTKSTK--QLAQNVTSF-----DVTNSQLAVLLKDRSF-QSFAWRNGE-MEKQFEFSLPS--ELEELPVEE 212 (381)
T ss_dssp -SEEEEEETTTCCEE--EEEESEEEE-----EECSSEEEEEETTSCE-EEEEEETTE-EEEEEEECCCH--HHHTSCTTT
T ss_pred -CCEEEEEeccCccc--cccCCcceE-----EecCCceEEEEeCCcE-EEEEeCCCc-eeeccCCCCcc--ccCCCcCCC
Confidence 89999999544211 111111111 0124688888888777 677664332 221 1222111 111111234
Q ss_pred CceeEEEEeecCCEEEEE
Q 037120 257 GTLNSIQLHAENQIIFAA 274 (489)
Q Consensus 257 ~~v~~~~~~p~~~~l~~~ 274 (489)
..|.+|.|-.+..++++-
T Consensus 213 ~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 213 YSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp SEEEEEEESSSSEEEEEE
T ss_pred cceeEEEEecCceEEEEE
Confidence 567889998665554443
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=80.46 E-value=12 Score=34.67 Aligned_cols=60 Identities=15% Similarity=0.256 Sum_probs=40.2
Q ss_pred CcEEEEECCCCCcCceeeccCCCCceeEEEEeecCCEEEEEeCCCeEEEEEcCCCcccceeec
Q 037120 234 GVVNIWDRRVGVLPSLELSTGSHGTLNSIQLHAENQIIFAAGKHGSIYLWDLRGGRTSAPFHN 296 (489)
Q Consensus 234 g~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~~dg~i~lwd~~~~~~~~~~~~ 296 (489)
|.|.-||+.+++.. .+... .....+-.+.-.+.++|+|+.||.++.+|.++|+.+-.++.
T Consensus 438 G~l~A~D~~tGk~~-W~~~~--~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l 497 (560)
T d1kv9a2 438 GALLAWDPVKQKAA-WKVPY--PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (560)
T ss_dssp EEEEEEETTTTEEE-EEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cceEEEeCCCCeEe-eeccC--CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence 46777888887532 22111 22222223445677889888899999999999999877764
|