Citrus Sinensis ID: 037219

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
KSLHPRKRHHGLELGAKKENFPTATAEKVKTGLVYVVMAVGFKFRVCCLKWLALAEHIVAYLGSHGVCSEEFDVGLQTNILPLKGHDIGQFLGLESMEKVEAQAYQPAT
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHcccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccHHEEccccccccccccccccccccccccccccEEccccc
Coil and Loop (DISEMBL)
kslhprkrhhglelgakkenfptataeKVKTGLVYVVMAVGFKFRVCCLKWLALAEHIVAYLgshgvcseefdvglqtnilplkghdigqflgLESMEKVEAQAYQPAT
Flexible Loop (DISEMBL)
kslhprkrhhglelgakkenfptataekvKTGLVYVVMAVGFKFRVCCLKWLALAEHIVAYLGSHGVCSEEFDVGLQTNILPLKGHDIGQFLGLESMEKVEAQAYQPAT
Low Complexity Region (SEG)
KSLHPRKRHHGLELGAKKENFPTATAEKVKTGLVYVVMAVGFKFRVCCLKWLALAEHIVAYLGSHGVCSEEFDVGLQTNILPLKGHDIGQFLGLESMEKVEAQAYQPAT
Disordered region (IsUnstruct)
*************************AEKVKTGLVYVVMAVGFKFRVCCLKWLALAEHIVAYLGSHGVCSEEFDVGLQTNILPLKGHDIGQFLGL***************
Disordered Region (DISOPRED)
********************FPTATAEKVKTGLVYVVMAVGFKFRVCCLKWLALAEHIVAYLGSHGVCSEEFDVGLQTNILPLKGHDIGQFLG****************
Disordered Region (DISEMBL)
********HHGLELGAKKENFPTATAEKVKTGLVYVVMAVGFKFRVCCLKWLALAEHIVAYLGSHGVCSEEFDVGLQTNILPLKGHDIGQFLGLESMEKVEAQAYQPAT
Disordered Region (DISPRO)
*******RH*GLELGAKKENFPTATAEKVKTGLVYVVMAVGFKFRVCCLKWLALAEHIVAYLGSHGVCSEEFDVGLQTNILPLKGHDIGQFLGLES*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
KSLHPRKRHHGLELGAKKENFPTATAEKVKTGLVYVVMAVGFKFRVCCLKWLALAEHIVAYLGSHGVCSEEFDVGLQTNILPLKGHDIGQFLGLESMEKVEAQAYQPAT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
225463946	467	PREDICTED: uncharacterized protein LOC10	0.642	0.149	0.492	2e-08
224130614	496	predicted protein [Populus trichocarpa]	0.844	0.185	0.375	3e-08
296087896	518	unnamed protein product [Vitis vinifera]	0.614	0.129	0.5	4e-08
18396966	486	FAD/NAD(P)-binding oxidoreductase domain	0.889	0.199	0.321	7e-07
297828968	485	oxidoreductase [Arabidopsis lyrata subsp	0.889	0.2	0.315	1e-06
115489414	497	Os12g0597400 [Oryza sativa Japonica Grou	0.633	0.138	0.428	5e-06
125537277	497	hypothetical protein OsI_38983 [Oryza sa	0.633	0.138	0.428	5e-06
108862915	456	expressed protein [Oryza sativa Japonica	0.633	0.151	0.428	5e-06
222617407	481	hypothetical protein OsJ_36748 [Oryza sa	0.633	0.143	0.428	5e-06
147823103	2691	hypothetical protein VITISV_000598 [Viti	0.486	0.019	0.537	8e-06

>gi|225463946|ref|XP_002268010.1| PREDICTED: uncharacterized protein LOC100241002 [Vitis vinifera]

 Score = 63.2 bits (152), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/71 (49%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 40  VGFKFRVCCLKWLALAEHIVAYLGSHGVCSEEFDVGLQTNILPLKGHDIGQFLGLESMEK 99
           +G       L  +ALA HI  Y  S G   +EF VGL     PL+GHDIGQF GL S E+
Sbjct: 397 MGSSLEAASLSGMALANHIADYFQSGGARPDEFAVGLHNEFHPLEGHDIGQFPGLGSKEQ 456

Query: 100 V-EAQAYQPAT 109
             EAQAYQ +T
Sbjct: 457 TDEAQAYQLST 467

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130614|ref|XP_002328333.1| predicted protein [Populus trichocarpa] gi|222838048|gb|EEE76413.1| predicted protein [Populus trichocarpa]

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 53/141 (37%), Positives = 60/141 (42%), Gaps = 49/141 (34%)

Query: 18  KENFPTATAEKVKTGLVY-VVMAVG---------FKFRV--------------------- 46
           +EN PTATAEKVKTG++  V  A+G         F  RV                     
Sbjct: 356 QENIPTATAEKVKTGMLEGVEAALGLPKDSLQQPFYSRVQLWGAALPTNTPGIPCIFDPH 415

Query: 47  ----CCLKWL-------------ALAEHIVAYLGSHGVCSEEFDVGLQTNILPLKGHDIG 89
                C  WL             ALA HI  YL S G   EEF +GL      L+GHDIG
Sbjct: 416 GRAGICGDWLLGSNLESAALSGMALANHIADYLRSGGARPEEFALGLNKEFQTLEGHDIG 475

Query: 90  QFLGLESMEKVEA-QAYQPAT 109
           QF GLES       QAYQ +T
Sbjct: 476 QFSGLESSTGASPIQAYQLST 496

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296087896|emb|CBI35179.3| unnamed protein product [Vitis vinifera]

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/68 (50%), Positives = 39/68 (57%), Gaps = 1/68 (1%)

Query: 40  VGFKFRVCCLKWLALAEHIVAYLGSHGVCSEEFDVGLQTNILPLKGHDIGQFLGLESMEK 99
           +G       L  +ALA HI  Y  S G   +EF VGL     PL+GHDIGQF GL S E+
Sbjct: 397 MGSSLEAASLSGMALANHIADYFQSGGARPDEFAVGLHNEFHPLEGHDIGQFPGLGSKEQ 456

Query: 100 V-EAQAYQ 106
             EAQAYQ
Sbjct: 457 TDEAQAYQ 464

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396966|ref|NP_566235.1| FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana] gi|6175169|gb|AAF04895.1|AC011437_10 unknown protein [Arabidopsis thaliana] gi|15215628|gb|AAK91359.1| AT3g04650/F7O18_13 [Arabidopsis thaliana] gi|28416461|gb|AAO42761.1| At3g04650/F7O18_13 [Arabidopsis thaliana] gi|332640593|gb|AEE74114.1| FAD/NAD(P)-binding oxidoreductase domain-containing protein [Arabidopsis thaliana]

 Score = 58.2 bits (139), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/146 (32%), Positives = 62/146 (42%), Gaps = 49/146 (33%)

Query: 10  HGLELGAKKENFPTATAEKVKTGLVY-VVMAVGF-----------KFRV----------- 46
           +G +    +EN PT TAEKVK G++  V +A+G            + ++           
Sbjct: 339 YGKQNKVPQENIPTVTAEKVKAGMLQGVEIALGLPEGSLPKPVYTRLQLWGAALPKNTPA 398

Query: 47  ------------CCLKWL-------------ALAEHIVAYLGSHGVCSEEFDVGLQTNIL 81
                        C  WL             AL  HI  +L +     EEF +GL   + 
Sbjct: 399 VPCIFDPQGRAGICGDWLLGSNLESAAISGAALGNHIAEFLQNGEANPEEFAIGLHDRLS 458

Query: 82  PLKGHDIGQFLGLESM-EKVEAQAYQ 106
           PL GHDIGQF GL S+ EK EA AYQ
Sbjct: 459 PLAGHDIGQFPGLTSVGEKEEANAYQ 484

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828968|ref|XP_002882366.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297328206|gb|EFH58625.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata]

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/146 (31%), Positives = 62/146 (42%), Gaps = 49/146 (33%)

Query: 10  HGLELGAKKENFPTATAEKVKTGLVY-VVMAVGF-----------KFRV----------- 46
           +G +    +EN PT TAEKV+ G++  V +A+G            + ++           
Sbjct: 338 YGKQNKVPQENIPTVTAEKVRAGMLQGVEIALGLPEGSLPKPVYTRLQLWGAALPKNTPA 397

Query: 47  ------------CCLKWL-------------ALAEHIVAYLGSHGVCSEEFDVGLQTNIL 81
                        C  WL             AL  HI  +L +     EEF +GL   + 
Sbjct: 398 VPCIFDPQGRAGICGDWLLGSNLESAALSGAALGNHIAEFLQNGEANPEEFAIGLHDRLS 457

Query: 82  PLKGHDIGQFLGLESM-EKVEAQAYQ 106
           PL GHDIGQF GL S+ EK EA AYQ
Sbjct: 458 PLDGHDIGQFPGLTSVGEKEEANAYQ 483

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115489414|ref|NP_001067194.1| Os12g0597400 [Oryza sativa Japonica Group] gi|77556443|gb|ABA99239.1| expressed protein [Oryza sativa Japonica Group] gi|113649701|dbj|BAF30213.1| Os12g0597400 [Oryza sativa Japonica Group] gi|215701342|dbj|BAG92766.1| unnamed protein product [Oryza sativa Japonica Group]

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 41  GFKFRVCCLKWLALAEHIVAYLGSHGVCSEEFDVGLQTNILPLKGHDIGQFLGLESMEKV 100
           G       L  ++LA HI  Y  S G   EEF +GL  N+  ++GHDIGQF GLES +  
Sbjct: 428 GSSIEAAVLSGMSLANHIADYFASSGEQPEEFAIGLHENLSQVEGHDIGQFPGLESQKPH 487

Query: 101 EAQA-YQPAT 109
            A+A   P+T
Sbjct: 488 VAEAQLTPST 497

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125537277|gb|EAY83765.1| hypothetical protein OsI_38983 [Oryza sativa Indica Group]

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 41  GFKFRVCCLKWLALAEHIVAYLGSHGVCSEEFDVGLQTNILPLKGHDIGQFLGLESMEKV 100
           G       L  ++LA HI  Y  S G   EEF +GL  N+  ++GHDIGQF GLES +  
Sbjct: 428 GSSIEAAVLSGMSLANHIADYFASSGEQPEEFAIGLHENLSQVEGHDIGQFPGLESQKPH 487

Query: 101 EAQA-YQPAT 109
            A+A   P+T
Sbjct: 488 VAEAQLTPST 497

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108862915|gb|ABG22072.1| expressed protein [Oryza sativa Japonica Group]

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 41  GFKFRVCCLKWLALAEHIVAYLGSHGVCSEEFDVGLQTNILPLKGHDIGQFLGLESMEKV 100
           G       L  ++LA HI  Y  S G   EEF +GL  N+  ++GHDIGQF GLES +  
Sbjct: 387 GSSIEAAVLSGMSLANHIADYFASSGEQPEEFAIGLHENLSQVEGHDIGQFPGLESQKPH 446

Query: 101 EAQA-YQPAT 109
            A+A   P+T
Sbjct: 447 VAEAQLTPST 456

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222617407|gb|EEE53539.1| hypothetical protein OsJ_36748 [Oryza sativa Japonica Group]

 Score = 55.1 bits (131), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/70 (42%), Positives = 39/70 (55%), Gaps = 1/70 (1%)

Query: 41  GFKFRVCCLKWLALAEHIVAYLGSHGVCSEEFDVGLQTNILPLKGHDIGQFLGLESMEKV 100
           G       L  ++LA HI  Y  S G   EEF +GL  N+  ++GHDIGQF GLES +  
Sbjct: 412 GSSIEAAVLSGMSLANHIADYFASSGEQPEEFAIGLHENLSQVEGHDIGQFPGLESQKPH 471

Query: 101 EAQA-YQPAT 109
            A+A   P+T
Sbjct: 472 VAEAQLTPST 481

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147823103|emb|CAN66330.1| hypothetical protein VITISV_000598 [Vitis vinifera]

 Score = 54.3 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/54 (53%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 57   HIVAYLGSHGVCSEEFDVGLQTNILPLKGHDIGQFLGLESMEKV-EAQAYQPAT 109
             I  Y  S G   +EF VGL     PL+GHDIGQF GL S E++ EAQAYQ +T
Sbjct: 2638 QIADYFQSGGARPDEFAVGLHKEFHPLEGHDIGQFPGLGSKEQMDEAQAYQLST 2691

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
TAIR|locus:2084903	486	AT3G04650 [Arabidopsis thalian	0.614	0.137	0.441	1.5e-12

TAIR|locus:2084903 AT3G04650 [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
 Identities = 30/68 (44%), Positives = 37/68 (54%)

Query:    40 VGFKFRVCCLKWLALAEHIVAYLGSHGVCSEEFDVGLQTNILPLKGHDIGQFLGLESM-E 98
             +G       +   AL  HI  +L +     EEF +GL   + PL GHDIGQF GL S+ E
Sbjct:   417 LGSNLESAAISGAALGNHIAEFLQNGEANPEEFAIGLHDRLSPLAGHDIGQFPGLTSVGE 476

Query:    99 KVEAQAYQ 106
             K EA AYQ
Sbjct:   477 KEEANAYQ 484

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	109
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	90.9
KOG2730	263	consensus Methylase [General function prediction o	87.24

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=90.90  E-value=0.089  Score=44.77  Aligned_cols=16  Identities=44%  Similarity=0.804  Sum_probs=14.1

Q ss_pred             hhhhHH-------------HHHHHHHHHh
Q 037219           47 CCLKWL-------------ALAEHIVAYL   62 (109)
Q Consensus        47 iCGDWl-------------ALA~~Ia~y~   62 (109)
                      +|||||             |+|+||..++
T Consensus       303 ~cGDwc~GgrVEgA~LSGlAaA~~i~~~L  331 (331)
T COG3380         303 ACGDWCAGGRVEGAVLSGLAAADHILNGL  331 (331)
T ss_pred             eecccccCcchhHHHhccHHHHHHHHhcC
Confidence            999999             8999998753

>KOG2730 consensus Methylase [General function prediction only]

Probab=87.24  E-value=0.42  Score=39.70  Aligned_cols=32  Identities=25%  Similarity=0.302  Sum_probs=20.4

Q ss_pred             cccchh--hhhhHHHHHHHHHHH-------hccCCCCchhh
Q 037219           41 GFKFRV--CCLKWLALAEHIVAY-------LGSHGVCSEEF   72 (109)
Q Consensus        41 gl~tRv--iCGDWlALA~~Ia~y-------~~s~~~~~eef   72 (109)
                      |++.||  ||||||-|+-.+..-       |.|+++..+..
T Consensus       140 GI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~sppwggp~y  180 (263)
T KOG2730|consen  140 GVPDRITFICGDFLDLASKLKADKIKYDCVFLSPPWGGPSY  180 (263)
T ss_pred             cCCceeEEEechHHHHHHHHhhhhheeeeeecCCCCCCcch
Confidence            455577  999999777665432       55665555443

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	109
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	94.14
1r9w_A	145	Replication protein E1; HPV-18, DNA-binding domain	89.2
1f08_A	148	Replication protein E1; DNA-binding domain, initia	88.9
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	84.06

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=94.14  E-value=0.02  Score=36.47  Aligned_cols=19  Identities=21%  Similarity=0.461  Sum_probs=16.4

Q ss_pred             hhhhHH-------------HHHHHHHHHhccC
Q 037219           47 CCLKWL-------------ALAEHIVAYLGSH   65 (109)
Q Consensus        47 iCGDWl-------------ALA~~Ia~y~~s~   65 (109)
                      +||||+             .+|++|.+++++-
T Consensus       299 l~GDa~~g~gv~~A~~sG~~aA~~I~~~L~~e  330 (336)
T 3kkj_A          299 VCGDWCLSGRVEGAWLSGQEAARRLLEHLQLE  330 (336)
T ss_dssp             ECCGGGTTSSHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             EEecccCCcCHHHHHHHHHHHHHHHHHHhhcc
Confidence            999998             7899999999664

>1r9w_A Replication protein E1; HPV-18, DNA-binding domain, viral replication, initiator protein; 1.80A {Human papillomavirus type 18} SCOP: d.89.1.2

Probab=89.20  E-value=0.16  Score=37.54  Aligned_cols=36  Identities=17%  Similarity=0.424  Sum_probs=29.2

Q ss_pred             HHHHHH-HHHHhccc----chh------hhhhHH--------HHHHHHHHHhccC
Q 037219           30 KTGLVY-VVMAVGFK----FRV------CCLKWL--------ALAEHIVAYLGSH   65 (109)
Q Consensus        30 ~~~Ml~-ve~ALgl~----tRv------iCGDWl--------ALA~~Ia~y~~s~   65 (109)
                      ++.||+ |+.+.|.+    ||.      +|.||+        .|++.+...++.+
T Consensus         2 rA~ll~kFKe~fgvsf~eLtR~FKSdKTcc~dWVv~~~gv~~~l~ea~k~lLq~h   56 (145)
T 1r9w_A            2 QGAMLAVFKDTYGLSFTDLVRNFKSDKTTCTDWVTAIFGVNPTIAEGFKTLIQPF   56 (145)
T ss_dssp             HHHHHHHHHHHHSSCGGGTBC-------CEEEEEEEEEEECHHHHHTHHHHHGGG
T ss_pred             hhHHHHHHHHHhCcChHheeecccCCCcCccccEEEEEecCHHHHHHHHHHHHhh
Confidence            678999 99999998    666      999999        8888877766554

>1f08_A Replication protein E1; DNA-binding domain, initiator protein, helicase; 1.90A {Bovine papillomavirus} SCOP: d.89.1.2 PDB: 1ksx_A 1ksy_A

Probab=88.90  E-value=0.17  Score=37.63  Aligned_cols=37  Identities=11%  Similarity=0.043  Sum_probs=30.5

Q ss_pred             HHHHHHH-HHHHhccc----chh------hhhhHH--------HHHHHHHHHhccC
Q 037219           29 VKTGLVY-VVMAVGFK----FRV------CCLKWL--------ALAEHIVAYLGSH   65 (109)
Q Consensus        29 V~~~Ml~-ve~ALgl~----tRv------iCGDWl--------ALA~~Ia~y~~s~   65 (109)
                      .++.||+ |+.+.|.+    ||.      +|.||+        .|++.+...++.+
T Consensus         4 ~ra~ll~kFKe~fgvsf~eLtR~FKSdKTcc~dWVv~~fgv~~~l~ea~k~lLq~h   59 (148)
T 1f08_A            4 ATVFKLGLFKSLFLCSFHDITRLFKNDKTTNQQWVLAVFGLAEVFFEASFELLKKQ   59 (148)
T ss_dssp             CCHHHHHHHHHHHSSCGGGSBCCCCCTTCCEEEEEEEEESCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCcChHHeeecccCCCcCccccEEEEEecCHHHHHHHHHHHHhh
Confidence            4678999 99999998    565      999999        8888888777654

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=84.06  E-value=0.56  Score=34.53  Aligned_cols=17  Identities=12%  Similarity=-0.080  Sum_probs=14.0

Q ss_pred             HHHHHHHHHH-HHHHhcc
Q 037219           26 AEKVKTGLVY-VVMAVGF   42 (109)
Q Consensus        26 AekV~~~Ml~-ve~ALgl   42 (109)
                      .+++.+.+++ ++..||.
T Consensus       259 ~~~~~~~~~~~l~~~~g~  276 (342)
T 3qj4_A          259 IEDVQELVFQQLENILPG  276 (342)
T ss_dssp             HHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHHHHHHHHhccC
Confidence            5788888998 9988873

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	109
d1r9wa_	145	Replication initiation protein E1 {Human papilloma	89.87

>d1r9wa_ d.89.1.2 (A:) Replication initiation protein E1 {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a+b)
fold: Origin of replication-binding domain, RBD-like
superfamily: Origin of replication-binding domain, RBD-like
family: Replication initiation protein E1
domain: Replication initiation protein E1
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=89.87  E-value=0.064  Score=37.98  Aligned_cols=36  Identities=17%  Similarity=0.424  Sum_probs=28.9

Q ss_pred             HHHHHH-HHHHhccc----chh------hhhhHH--------HHHHHHHHHhccC
Q 037219           30 KTGLVY-VVMAVGFK----FRV------CCLKWL--------ALAEHIVAYLGSH   65 (109)
Q Consensus        30 ~~~Ml~-ve~ALgl~----tRv------iCGDWl--------ALA~~Ia~y~~s~   65 (109)
                      +++||+ |+.+.|++    ||.      +|.||+        .|++.+...++.+
T Consensus         2 rAt~L~kFKe~fgvSf~eLtR~FKSdKTcc~dWVv~~~gv~~~l~ea~k~lLq~h   56 (145)
T d1r9wa_           2 QGAMLAVFKDTYGLSFTDLVRNFKSDKTTCTDWVTAIFGVNPTIAEGFKTLIQPF   56 (145)
T ss_dssp             HHHHHHHHHHHHSSCGGGTBC-------CEEEEEEEEEEECHHHHHTHHHHHGGG
T ss_pred             hhhHHHHHHHHhCcchHheeecccCCCcchhcceEEEEEeCHHHHHHHHHHHHhh
Confidence            578999 99999998    666      999999        7887777766543