Citrus Sinensis ID: 037231

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MGSKEMSLVLLMMAVVVAAAATPSGIKSINVVGRIEDENEMSMPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYRRECSTSTNCERSTS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHcccccEEccccccccccccccccccccccccccccccccccccccccHHccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHcccccccccccEEccccccccHHcccccHHHHHHHHHcccEEEHHHHccccccccccccccEcccccccccccccccccccHHHHcccccc
Coil and Loop (DISEMBL)
MGSKEMSLVLLMMAVVVAAAatpsgiksinvvgriedenemsmpteeSRRHLNAGQDCISYDAmlankvpcslkghsyydcrnrtgsgpvnpyrrecststncersts
Flexible Loop (DISEMBL)
MGSKEMSLVLLMMAVVVAaaatpsgiksinvVGRIEDENEMSMPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNrtgsgpvnpyrrecststncersts
Low Complexity Region (SEG)
MGSKEMSlvllmmavvvaaaaTPSGIKSINVVGRIEDENEMSMPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYRRECSTSTNCERSTS
Disordered region (IsUnstruct)
*******LVLLMMAVVVAAAATPSGIKSINVVGR********************GQDCISYDAMLANKVPCSLKGHSYYDCRN*************************
Disordered Region (DISOPRED)
****EMSLVLLMMAVVVAAAATPSGIKSINVVGRI****************LNAGQDCISYDAMLANKVPCSLKGHS****************RRECSTSTNCER***
Disordered Region (DISEMBL)
MGSKEMSLVLLMMAVVVAAAATPSGIKSINVVGRIEDENE***********LNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYR**************
Disordered Region (DISPRO)
*GSKEMSLVLLMMAVVVAAAATPSGIKSINVVGRIEDENEMSMPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPVNP*RRECSTSTNCE****
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGSKEMSLVLLMMAVVVAAAATPSGIKSINVVGRIEDENEMSMPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYRRECSTSTNCERSTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	108	2.2.26 [Sep-21-2011]
Q9FZA0	110	Protein RALF-like 4 OS=Ar	yes	no	0.944	0.927	0.427	2e-13
Q6NME6	110	Protein RALF-like 19 OS=A	no	no	0.842	0.827	0.453	3e-12
Q2HIM9	113	Protein RALF-like 31 OS=A	no	no	0.916	0.876	0.375	6e-11
Q8L9P8	116	Protein RALF-like 33 OS=A	no	no	0.592	0.551	0.470	8e-08
Q9MA62	119	Protein RALF-like 22 OS=A	no	no	0.546	0.495	0.476	5e-07
Q9LUS7	138	Rapid alkalinization fact	no	no	0.527	0.413	0.45	1e-06
Q9LK37	118	Protein RALF-like 24 OS=A	no	no	0.555	0.508	0.437	2e-06
Q945T0	115	Rapid alkalinization fact	N/A	no	0.518	0.486	0.440	6e-06
Q9SRY3	120	Protein RALF-like 1 OS=Ar	no	no	0.555	0.5	0.437	2e-05
Q9FHA6	129	Protein RALF-like 34 OS=A	no	no	0.435	0.364	0.5	0.0001

>sp|Q9FZA0|RLF4_ARATH Protein RALF-like 4 OS=Arabidopsis thaliana GN=RALFL4 PE=3 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 61/110 (55%), Gaps = 8/110 (7%)

Query: 1   MGSKEMSLVLLMMAVVVAA---AATPSGIKSINVVGRI--EDENEMSMPTEESRRHLNAG 55
           MG K + +  L++  +VA    A  P     IN  G I  +DE E  M +E +RR L  G
Sbjct: 1   MGVKMLLIFGLLILAMVAKSVNATYPLTKSCINGQGCIGEDDELESLMDSETNRRQLARG 60

Query: 56  QDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYRRECSTSTNCER 105
           +  I YDA+  N VPCS +G SYYDC+ R  +   NPYRR CS  T+C R
Sbjct: 61  RRYIGYDALKKNNVPCSRRGRSYYDCKKRRRN---NPYRRGCSAITHCYR 107

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6NME6|RLF19_ARATH Protein RALF-like 19 OS=Arabidopsis thaliana GN=RALFL19 PE=3 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 44/97 (45%), Positives = 57/97 (58%), Gaps = 6/97 (6%)

Query: 15  VVVAAAATPSGIKS-INVVGRIEDENEMS--MPTEESRRHLNAGQDCISYDAMLANKVPC 71
           V  +A AT +  KS +N  G I ++ E+   M +E +RR L A +  ISY A+  N VPC
Sbjct: 17  VAESANATWTLTKSCVNGQGCIGEDGELDYLMDSETNRRQLAARRSYISYGALRKNNVPC 76

Query: 72  SLKGHSYYDCRNRTGSGPVNPYRRECSTSTNCERSTS 108
           S +G SYYDC+ R      NPYRR CS  T+C R TS
Sbjct: 77  SRRGRSYYDCKKRK---RANPYRRGCSVITHCYRQTS 110

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2HIM9|RLF31_ARATH Protein RALF-like 31 OS=Arabidopsis thaliana GN=RALFL31 PE=3 SV=1

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 5/104 (4%)

Query: 6   MSLVLLMMAVVVAAAATPSG-IKSINVVGRIEDENEMSMPTEESRRHLNAGQDCISYDAM 64
            +++ L+++       +P+G I ++ +   I  E+E  MPTE SRR L A +  I Y+ +
Sbjct: 10  FAILFLLISADAFPIPSPNGEIDAMLIRNSIIGEDEDLMPTEISRRVLMAQKRYIGYETL 69

Query: 65  LANKVPCSLKGHSYYDCRNRTGSGPVNPYRRECSTSTNCERSTS 108
             + VPC   G SYYDCR    SG  N Y R C T T C R T+
Sbjct: 70  RRDMVPCQKPGASYYDCR----SGQANSYSRGCDTITRCARDTN 109

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L9P8|RLF33_ARATH Protein RALF-like 33 OS=Arabidopsis thaliana GN=RALFL33 PE=2 SV=1

 Score = 55.8 bits (133), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/68 (47%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 38  ENEMSMPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYRREC 97
           E E  M +E +RR L A    ISY A+  N VPCS +G SYY+CR        NPY R C
Sbjct: 53  EEEFEMDSEINRRIL-ATTKYISYGALRRNTVPCSRRGASYYNCRR---GAQANPYSRGC 108

Query: 98  STSTNCER 105
           S  T C R
Sbjct: 109 SAITRCRR 116

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9MA62|RLF22_ARATH Protein RALF-like 22 OS=Arabidopsis thaliana GN=RALFL22 PE=3 SV=1

 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/63 (47%), Positives = 36/63 (57%), Gaps = 4/63 (6%)

Query: 43  MPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYRRECSTSTN 102
             ++ SRR L A +  ISY AM  N VPCS +G SYY+C+        NPY R CST T 
Sbjct: 61  FDSDISRRIL-AQKKYISYGAMRRNSVPCSRRGASYYNCQR---GAQANPYSRGCSTITR 116

Query: 103 CER 105
           C R
Sbjct: 117 CRR 119

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUS7|RLF23_ARATH Rapid alkalinization factor 23 OS=Arabidopsis thaliana GN=RALF23 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 47  ESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYRRECSTSTNCERS 106
           E  R + A +  ISY A+  N +PCS +G SYY+CR        NPY R CS  T C RS
Sbjct: 82  EINRRILATRRYISYGALRRNTIPCSRRGASYYNCRR---GAQANPYSRGCSAITRCRRS 138

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases (By similarity). Regulates negatively brassinolide (BL)-mediated signaling pathway (e.g. BL-induced hypocotyl elongation and branching limitation).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK37|RLF24_ARATH Protein RALF-like 24 OS=Arabidopsis thaliana GN=RALFL24 PE=3 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 34/64 (53%), Gaps = 4/64 (6%)

Query: 44  PTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYRRECSTSTNC 103
           P+E SRR +   +  ISY+ +  + VPC   G SYY CR    SG  N Y R CS  T C
Sbjct: 54  PSEISRRVMMMRKQYISYETLRRDMVPCQKPGASYYACR----SGQANAYNRGCSVITRC 109

Query: 104 ERST 107
            R T
Sbjct: 110 ARDT 113

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

>sp|Q945T0|RALF_TOBAC Rapid alkalinization factor OS=Nicotiana tabacum GN=RALF PE=1 SV=1

 Score = 49.7 bits (117), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 46  EESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYRRECSTSTNCE 104
            ES R + A +  ISY A+  N VPCS +G SYY+C+        NPY R CS  T C 
Sbjct: 59  SESNRRILATKKYISYGALQKNSVPCSRRGASYYNCKP---GAQANPYSRGCSAITRCR 114

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases. Prevents root growth and seedling development in heterologous system.

Nicotiana tabacum (taxid: 4097)

>sp|Q9SRY3|RLF1_ARATH Protein RALF-like 1 OS=Arabidopsis thaliana GN=RALF1 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/64 (43%), Positives = 35/64 (54%), Gaps = 4/64 (6%)

Query: 40  EMSMPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYRRECST 99
           E  M +E +RR L A    ISY ++  N VPCS +G SYY+C+N       NPY R CS 
Sbjct: 59  EEEMDSEINRRIL-ATTKYISYQSLKRNSVPCSRRGASYYNCQN---GAQANPYSRGCSK 114

Query: 100 STNC 103
              C
Sbjct: 115 IARC 118

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases. Mostly active in roots. Prevents plant growth (e.g. root and leaf length).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHA6|RLF34_ARATH Protein RALF-like 34 OS=Arabidopsis thaliana GN=RALFL34 PE=2 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 59  ISYDAMLANKVPCSLK-GHSYYDCRNRTGSGPVNPYRRECSTSTNCER 105
           ISY A+ AN+VPC  + G SYY        GPV+PY R CS+ T C R
Sbjct: 82  ISYGALSANRVPCPPRSGRSYYTHNCFRARGPVHPYSRGCSSITRCRR 129

Cell signaling peptide that may regulate plant stress, growth, and development. Mediates a rapid alkalinization of extracellular space by mediating a transient increase in the cytoplasmic Ca(2+) concentration leading to a calcium-dependent signaling events through a cell surface receptor and a concomitant activation of some intracellular mitogen-activated protein kinases.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
357498665	105	Rapid alkalinization factor [Medicago tr	0.824	0.847	0.428	2e-12
358346090	111	RALF [Medicago truncatula] gi|355503040|	0.898	0.873	0.433	2e-12
116790941	121	unknown [Picea sitchensis] gi|224286958|	0.685	0.611	0.5	4e-12
224285313	121	unknown [Picea sitchensis]	0.685	0.611	0.5	5e-12
15217877	110	protein ralf-like 4 [Arabidopsis thalian	0.944	0.927	0.427	7e-12
297823175	110	hypothetical protein ARALYDRAFT_902453 [	0.972	0.954	0.442	8e-11
30685837	110	ralf-like 19 protein [Arabidopsis thalia	0.842	0.827	0.453	1e-10
356548704	111	PREDICTED: uncharacterized protein LOC10	0.657	0.639	0.486	2e-10
388516439	110	unknown [Lotus japonicus]	0.638	0.627	0.458	3e-10
225443652	128	PREDICTED: uncharacterized protein LOC10	0.657	0.554	0.459	8e-10

>gi|357498665|ref|XP_003619621.1| Rapid alkalinization factor [Medicago truncatula] gi|355494636|gb|AES75839.1| Rapid alkalinization factor [Medicago truncatula]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/105 (42%), Positives = 62/105 (59%), Gaps = 16/105 (15%)

Query: 8   LVLLMMAVVVA-AAATPSGIKSIN-----VVGR-IEDENEMSMPTEESRRHLNAGQDCIS 60
           L+   +A+V+A  +A  S +   +     +VG  I +ENEM M +E +RR        IS
Sbjct: 8   LMFFFLAMVIAMVSAKASKVHDFSFPSPVLVGDLIREENEMLMDSESNRRRY------IS 61

Query: 61  YDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYRRECSTSTNCER 105
           YDA+LA+ +PC LKG SYYDC +R     VNPYRR C+  T+C R
Sbjct: 62  YDALLADSIPCGLKGQSYYDCNHRDQ---VNPYRRGCTAITHCAR 103

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358346090|ref|XP_003637105.1| RALF [Medicago truncatula] gi|355503040|gb|AES84243.1| RALF [Medicago truncatula]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 60/106 (56%), Gaps = 9/106 (8%)

Query: 6   MSLVLLMMAVVVAAAATP---SGIKSINVVGRIEDENEMSMPTEESRRHLNAGQD--CIS 60
           M   L M+  +V+A A+        S+ V   I D+NEM M +E +RR L AG+    IS
Sbjct: 9   MFFFLAMLIAMVSAEASKVHDFTFASVRVGDLIGDDNEMLMDSESNRRTL-AGRKRRYIS 67

Query: 61  YDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYRRECSTSTNCERS 106
           Y A+ AN +PC  KG SYYDC  R   G  NPYRR C+  T+C R+
Sbjct: 68  YGALKANNIPCGQKGQSYYDCNAR---GQANPYRRGCTAITHCART 110

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116790941|gb|ABK25798.1| unknown [Picea sitchensis] gi|224286958|gb|ACN41181.1| unknown [Picea sitchensis]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 53/78 (67%), Gaps = 4/78 (5%)

Query: 31  VVGRIEDENEMSMPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPV 90
           ++G   +E+EM M +E +RR L AG+  ISY A+ AN VPCS +G SYY+CR+   +   
Sbjct: 48  LIGECFEEDEMQMDSEINRRFL-AGRTYISYAALRANSVPCSKRGSSYYNCRS---TSQA 103

Query: 91  NPYRRECSTSTNCERSTS 108
           NPY+R C+T T C RSTS
Sbjct: 104 NPYQRSCTTITRCARSTS 121

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224285313|gb|ACN40381.1| unknown [Picea sitchensis]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 53/78 (67%), Gaps = 4/78 (5%)

Query: 31  VVGRIEDENEMSMPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPV 90
           ++G   +E+EM M +E +RR L AG+  ISY A+ AN VPCS +G SYY+CR+   +   
Sbjct: 48  LIGECFEEDEMQMDSEINRRFL-AGRTYISYAALRANSVPCSRRGSSYYNCRS---TSQA 103

Query: 91  NPYRRECSTSTNCERSTS 108
           NPY+R C+T T C RSTS
Sbjct: 104 NPYQRSCTTITRCARSTS 121

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217877|ref|NP_174148.1| protein ralf-like 4 [Arabidopsis thaliana] gi|297845772|ref|XP_002890767.1| hypothetical protein ARALYDRAFT_473036 [Arabidopsis lyrata subsp. lyrata] gi|75173390|sp|Q9FZA0.1|RLF4_ARATH RecName: Full=Protein RALF-like 4; Flags: Precursor gi|9795610|gb|AAF98428.1|AC021044_7 Hypothetical protein [Arabidopsis thaliana] gi|28973673|gb|AAO64155.1| unknown protein [Arabidopsis thaliana] gi|110737076|dbj|BAF00491.1| hypothetical protein [Arabidopsis thaliana] gi|297336609|gb|EFH67026.1| hypothetical protein ARALYDRAFT_473036 [Arabidopsis lyrata subsp. lyrata] gi|332192818|gb|AEE30939.1| protein ralf-like 4 [Arabidopsis thaliana]

 Score = 74.3 bits (181), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 61/110 (55%), Gaps = 8/110 (7%)

Query: 1   MGSKEMSLVLLMMAVVVAA---AATPSGIKSINVVGRI--EDENEMSMPTEESRRHLNAG 55
           MG K + +  L++  +VA    A  P     IN  G I  +DE E  M +E +RR L  G
Sbjct: 1   MGVKMLLIFGLLILAMVAKSVNATYPLTKSCINGQGCIGEDDELESLMDSETNRRQLARG 60

Query: 56  QDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYRRECSTSTNCER 105
           +  I YDA+  N VPCS +G SYYDC+ R  +   NPYRR CS  T+C R
Sbjct: 61  RRYIGYDALKKNNVPCSRRGRSYYDCKKRRRN---NPYRRGCSAITHCYR 107

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823175|ref|XP_002879470.1| hypothetical protein ARALYDRAFT_902453 [Arabidopsis lyrata subsp. lyrata] gi|297325309|gb|EFH55729.1| hypothetical protein ARALYDRAFT_902453 [Arabidopsis lyrata subsp. lyrata]

 Score = 71.2 bits (173), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 66/113 (58%), Gaps = 8/113 (7%)

Query: 1   MGSKEMSLVLLMMAVVVA--AAATPSGIKS-INVVGRIEDENEMS--MPTEESRRHLNAG 55
           MG K + ++ L+   VVA  A AT +  KS +N  G I ++ E+   M +E +RR L A 
Sbjct: 1   MGIKFLLILGLLALAVVAESANATWTLTKSCVNGQGCIGEDGELDYLMDSETNRRQLAAR 60

Query: 56  QDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYRRECSTSTNCERSTS 108
           +  ISY A+  N VPCS +G SYYDC+ R      NPYRR CS  T+C R TS
Sbjct: 61  RSYISYGALRKNNVPCSRRGRSYYDCKKRK---RANPYRRGCSVITHCYRQTS 110

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30685837|ref|NP_850219.1| ralf-like 19 protein [Arabidopsis thaliana] gi|75127045|sp|Q6NME6.1|RLF19_ARATH RecName: Full=Protein RALF-like 19; Flags: Precursor gi|44917505|gb|AAS49077.1| At2g33775 [Arabidopsis thaliana] gi|330253789|gb|AEC08883.1| ralf-like 19 protein [Arabidopsis thaliana]

 Score = 70.5 bits (171), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 44/97 (45%), Positives = 57/97 (58%), Gaps = 6/97 (6%)

Query: 15  VVVAAAATPSGIKS-INVVGRIEDENEMS--MPTEESRRHLNAGQDCISYDAMLANKVPC 71
           V  +A AT +  KS +N  G I ++ E+   M +E +RR L A +  ISY A+  N VPC
Sbjct: 17  VAESANATWTLTKSCVNGQGCIGEDGELDYLMDSETNRRQLAARRSYISYGALRKNNVPC 76

Query: 72  SLKGHSYYDCRNRTGSGPVNPYRRECSTSTNCERSTS 108
           S +G SYYDC+ R      NPYRR CS  T+C R TS
Sbjct: 77  SRRGRSYYDCKKRK---RANPYRRGCSVITHCYRQTS 110

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548704|ref|XP_003542740.1| PREDICTED: uncharacterized protein LOC100775865 [Glycine max]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 46/74 (62%), Gaps = 3/74 (4%)

Query: 35  IEDENEMSMPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYR 94
           I D+NEM + +E +RR L   Q  ISY A+ AN VPC  +G SYY+C+ R   G  NPY 
Sbjct: 41  IGDDNEMLLDSESNRRTLTGRQRYISYGALNANNVPCGNRGRSYYNCQQR---GRANPYN 97

Query: 95  RECSTSTNCERSTS 108
           R C+  T+C R TS
Sbjct: 98  RGCTKITHCARDTS 111

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516439|gb|AFK46281.1| unknown [Lotus japonicus]

 Score = 69.3 bits (168), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/72 (45%), Positives = 47/72 (65%), Gaps = 3/72 (4%)

Query: 35  IEDENEMSMPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYR 94
           I ++NEM + +E SRR L   +  ISY A+ A +VPC  +G SYY+C+ R   G  NPYR
Sbjct: 39  IGEDNEMLLDSEASRRTLRGRRGYISYGALKAGQVPCGRRGRSYYNCQQR---GRANPYR 95

Query: 95  RECSTSTNCERS 106
           R C+ +T+C R+
Sbjct: 96  RGCTAATHCARN 107

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443652|ref|XP_002280202.1| PREDICTED: uncharacterized protein LOC100267454 [Vitis vinifera]

 Score = 67.8 bits (164), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/74 (45%), Positives = 45/74 (60%), Gaps = 3/74 (4%)

Query: 35  IEDENEMSMPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYR 94
           I +++EM M +E +RR L   +  ISY A+  N+VPC+ +G SYY+CR     G  NPYR
Sbjct: 58  INEDDEMMMDSETNRRSLAQRRRYISYGALRRNQVPCNRRGRSYYNCRR---GGRANPYR 114

Query: 95  RECSTSTNCERSTS 108
           R CS  T C R T 
Sbjct: 115 RGCSVITKCHRFTD 128

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	108
TAIR|locus:2032195	110	RALFL4 "ralf-like 4" [Arabidop	0.740	0.727	0.464	7.9e-14
TAIR|locus:504955964	110	RALFL19 "ralf-like 19" [Arabid	0.712	0.7	0.463	1.6e-13
TAIR|locus:2129261	113	RALFL31 "ralf-like 31" [Arabid	0.768	0.734	0.431	1e-11
TAIR|locus:2079787	119	RALFL22 "ralf-like 22" [Arabid	0.620	0.563	0.492	7.4e-11
TAIR|locus:505006366	118	RALFL24 "ralf-like 24" [Arabid	0.666	0.610	0.435	1.2e-10
TAIR|locus:2130724	116	RALFL33 "ralf-like 33" [Arabid	0.592	0.551	0.485	1.4e-09
UNIPROTKB|Q945T0	115	RALF "Rapid alkalinization fac	0.601	0.565	0.449	1.8e-09
TAIR|locus:2089323	138	RALF23 "rapid alkalinization f	0.583	0.456	0.477	1.8e-09
TAIR|locus:2024730	120	RALF1 "rapid alkalinization fa	0.555	0.5	0.453	8.7e-08
TAIR|locus:2155553	129	RALFL34 "ralf-like 34" [Arabid	0.435	0.364	0.5	3.8e-07

TAIR|locus:2032195 RALFL4 "ralf-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 39/84 (46%), Positives = 49/84 (58%)

Query:    22 TPSGIKSINVVGRIEDENEMSMPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDC 81
             T S I     +G  +DE E  M +E +RR L  G+  I YDA+  N VPCS +G SYYDC
Sbjct:    28 TKSCINGQGCIGE-DDELESLMDSETNRRQLARGRRYIGYDALKKNNVPCSRRGRSYYDC 86

Query:    82 RNRTGSGPVNPYRRECSTSTNCER 105
             + R  +   NPYRR CS  T+C R
Sbjct:    87 KKRRRN---NPYRRGCSAITHCYR 107

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:504955964 RALFL19 "ralf-like 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 38/82 (46%), Positives = 50/82 (60%)

Query:    29 INVVGRIEDENEMS--MPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTG 86
             +N  G I ++ E+   M +E +RR L A +  ISY A+  N VPCS +G SYYDC+ R  
Sbjct:    32 VNGQGCIGEDGELDYLMDSETNRRQLAARRSYISYGALRKNNVPCSRRGRSYYDCKKRKR 91

Query:    87 SGPVNPYRRECSTSTNCERSTS 108
             +   NPYRR CS  T+C R TS
Sbjct:    92 A---NPYRRGCSVITHCYRQTS 110

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:2129261 RALFL31 "ralf-like 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 159 (61.0 bits), Expect = 1.0e-11, P = 1.0e-11
 Identities = 38/88 (43%), Positives = 49/88 (55%)

Query:    22 TPSG-IKSINVVGRIEDENEMSMPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYD 80
             +P+G I ++ +   I  E+E  MPTE SRR L A +  I Y+ +  + VPC   G SYYD
Sbjct:    26 SPNGEIDAMLIRNSIIGEDEDLMPTEISRRVLMAQKRYIGYETLRRDMVPCQKPGASYYD 85

Query:    81 CRNRTGSGPVNPYRRECSTSTNCERSTS 108
             CR    SG  N Y R C T T C R T+
Sbjct:    86 CR----SGQANSYSRGCDTITRCARDTN 109

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:2079787 RALFL22 "ralf-like 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 35/71 (49%), Positives = 43/71 (60%)

Query:    35 IEDENEMSMPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYR 94
             I +E EM   ++ SRR L A +  ISY AM  N VPCS +G SYY+C+   G+   NPY 
Sbjct:    53 IAEEEEMEFDSDISRRIL-AQKKYISYGAMRRNSVPCSRRGASYYNCQR--GA-QANPYS 108

Query:    95 RECSTSTNCER 105
             R CST T C R
Sbjct:   109 RGCSTITRCRR 119

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:505006366 RALFL24 "ralf-like 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 34/78 (43%), Positives = 43/78 (55%)

Query:    31 VVGRIEDENEMSMPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPV 90
             V+G  E+E E  MP+E SRR +   +  ISY+ +  + VPC   G SYY CR    SG  
Sbjct:    43 VIG--EEEGEEMMPSEISRRVMMMRKQYISYETLRRDMVPCQKPGASYYACR----SGQA 96

Query:    91 NPYRRECSTSTNCERSTS 108
             N Y R CS  T C R T+
Sbjct:    97 NAYNRGCSVITRCARDTN 114

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

TAIR|locus:2130724 RALFL33 "ralf-like 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 33/68 (48%), Positives = 39/68 (57%)

Query:    38 ENEMSMPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYRREC 97
             E E  M +E +RR L A    ISY A+  N VPCS +G SYY+CR   G+   NPY R C
Sbjct:    53 EEEFEMDSEINRRIL-ATTKYISYGALRRNTVPCSRRGASYYNCRR--GA-QANPYSRGC 108

Query:    98 STSTNCER 105
             S  T C R
Sbjct:   109 SAITRCRR 116

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|Q945T0 RALF "Rapid alkalinization factor" [Nicotiana tabacum (taxid:4097)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 31/69 (44%), Positives = 41/69 (59%)

Query:    35 IEDENEMSMPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYR 94
             I +E E  + +E +RR L A +  ISY A+  N VPCS +G SYY+C+   G+   NPY 
Sbjct:    49 IAEEEEFELDSESNRRIL-ATKKYISYGALQKNSVPCSRRGASYYNCK--PGA-QANPYS 104

Query:    95 RECSTSTNC 103
             R CS  T C
Sbjct:   105 RGCSAITRC 113

GO:0004871 "signal transducer activity" evidence=IDA

GO:0005179 "hormone activity" evidence=IDA

GO:0019722 "calcium-mediated signaling" evidence=IDA

TAIR|locus:2089323 RALF23 "rapid alkalinization factor 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 32/67 (47%), Positives = 40/67 (59%)

Query:    40 EMSMPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYRRECST 99
             E  M +E +RR L A +  ISY A+  N +PCS +G SYY+CR   G+   NPY R CS 
Sbjct:    76 EFEMDSEINRRIL-ATRRYISYGALRRNTIPCSRRGASYYNCRR--GA-QANPYSRGCSA 131

Query:   100 STNCERS 106
              T C RS
Sbjct:   132 ITRCRRS 138

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP

GO:0045926 "negative regulation of growth" evidence=IMP

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2024730 RALF1 "rapid alkalinization factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
 Identities = 29/64 (45%), Positives = 37/64 (57%)

Query:    40 EMSMPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYRRECST 99
             E  M +E +RR L A    ISY ++  N VPCS +G SYY+C+N  G+   NPY R CS 
Sbjct:    59 EEEMDSEINRRIL-ATTKYISYQSLKRNSVPCSRRGASYYNCQN--GA-QANPYSRGCSK 114

Query:   100 STNC 103
                C
Sbjct:   115 IARC 118

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0019722 "calcium-mediated signaling" evidence=IDA

TAIR|locus:2155553 RALFL34 "ralf-like 34" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 24/48 (50%), Positives = 29/48 (60%)

Query:    59 ISYDAMLANKVPCSLK-GHSYYDCRNRTGSGPVNPYRRECSTSTNCER 105
             ISY A+ AN+VPC  + G SYY        GPV+PY R CS+ T C R
Sbjct:    82 ISYGALSANRVPCPPRSGRSYYTHNCFRARGPVHPYSRGCSSITRCRR 129


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.126   0.372    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      108        94   0.00091  102 3  11 23  0.43    30
                                                     29  0.42    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  519 (55 KB)
  Total size of DFA:  113 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.07u 0.12s 10.19t   Elapsed:  00:00:00
  Total cpu time:  10.07u 0.12s 10.19t   Elapsed:  00:00:00
  Start:  Sat May 11 04:58:12 2013   End:  Sat May 11 04:58:12 2013

GO:0005576 "extracellular region" evidence=ISM

GO:0004871 "signal transducer activity" evidence=TAS

GO:0007267 "cell-cell signaling" evidence=ISS

GO:0048046 "apoplast" evidence=ISS

GO:0006949 "syncytium formation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FZA0	RLF4_ARATH	No assigned EC number	0.4272	0.9444	0.9272	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	108
pfam05498	66	pfam05498, RALF, Rapid ALkalinization Factor (RALF	7e-15
PLN03221	137	PLN03221, PLN03221, rapid alkalinization factor 23	2e-10
PLN03222	119	PLN03222, PLN03222, rapid alkalinization factor 23	7e-10

>gnl|CDD|218610 pfam05498, RALF, Rapid ALkalinization Factor (RALF)

 Score = 63.2 bits (154), Expect = 7e-15
 Identities = 31/70 (44%), Positives = 39/70 (55%), Gaps = 4/70 (5%)

Query: 36  EDENEMSMPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYRR 95
           E+E  + M +   RR L A +  ISY A+  N VPCS +G SYY+C+      P NPY R
Sbjct: 1   EEEALVVMDSPAGRRVL-AARRYISYGALRRNSVPCSRRGASYYNCKPG---APANPYSR 56

Query: 96  ECSTSTNCER 105
            CS  T C R
Sbjct: 57  GCSAITRCRR 66

RALF, a 5-kDa ubiquitous polypeptide in plants, arrests root growth and development. Length = 66

>gnl|CDD|178760 PLN03221, PLN03221, rapid alkalinization factor 23; Provisional

 Score = 53.9 bits (129), Expect = 2e-10
 Identities = 30/66 (45%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 40  EMSMPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYRRECST 99
           E  M +E +RR L A +  ISY A+  N +PCS +G SYY+CR        NPY R CS 
Sbjct: 76  EFEMDSEINRRIL-ATRRYISYGALRRNTIPCSRRGASYYNCRR---GAQANPYSRGCSA 131

Query: 100 STNCER 105
            T C R
Sbjct: 132 ITRCRR 137

Length = 137

>gnl|CDD|178761 PLN03222, PLN03222, rapid alkalinization factor 23-like protein; Provisional

 Score = 51.7 bits (123), Expect = 7e-10
 Identities = 32/68 (47%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 38  ENEMSMPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYRREC 97
           E E  M +E +RR L A    ISY A+  N VPCS +G SYY+CR        NPY R C
Sbjct: 56  EEEFEMDSEINRRIL-ATTKYISYGALRRNTVPCSRRGASYYNCRR---GAQANPYSRGC 111

Query: 98  STSTNCER 105
           S  T C R
Sbjct: 112 SAITRCRR 119

Length = 119

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	108
PLN03222	119	rapid alkalinization factor 23-like protein; Provi	100.0
PLN03221	137	rapid alkalinization factor 23; Provisional	99.98
PF05498	66	RALF: Rapid ALkalinization Factor (RALF) ; InterPr	99.94
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	88.21

>PLN03222 rapid alkalinization factor 23-like protein; Provisional

Probab=100.00  E-value=1.1e-34  Score=209.46  Aligned_cols=76  Identities=41%  Similarity=0.692  Sum_probs=71.2

Q ss_pred             ceeeeeeeccc--ccccccCCchhhhcccccCCceeccccccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccc
Q 037231           26 IKSINVVGRIE--DENEMSMPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYRRECSTSTNC  103 (108)
Q Consensus        26 ~~s~~v~ec~~--~eeE~~m~sE~sRR~L~~~~~yIsYgAL~~d~vPC~~~G~sY~nC~p~~~~~paNpY~RGCs~itrC  103 (108)
                      +|+|+|+||++  +|+||+||||++||+|++ .+||||+||++|.+||+++|+|||||+++   +|+|||+|||++||||
T Consensus        42 ~C~Gsi~EC~~~~~e~e~~mdSe~sRR~L~~-~rYISYgALrrd~vPCsrrG~SYynC~~~---~~ANPY~RGCs~ITrC  117 (119)
T PLN03222         42 KCNGTIAECSLSTAEEEFEMDSEINRRILAT-TKYISYGALRRNTVPCSRRGASYYNCRRG---AQANPYSRGCSAITRC  117 (119)
T ss_pred             cCCCCHHHhhcccccchhccccHHHHHHHhh-cCeecHHHhcCCCCCCCCCCCCccccCCC---CCCCCCCCCchhhccc
Confidence            58899999985  467899999999999997 59999999999999999999999999997   8999999999999999


Q ss_pred             cC
Q 037231          104 ER  105 (108)
Q Consensus       104 rR  105 (108)
                      ||
T Consensus       118 rR  119 (119)
T PLN03222        118 RR  119 (119)
T ss_pred             cC
Confidence            97

>PLN03221 rapid alkalinization factor 23; Provisional

Probab=99.98  E-value=1.8e-33  Score=206.94  Aligned_cols=76  Identities=38%  Similarity=0.677  Sum_probs=68.8

Q ss_pred             ceeeeeeecc-------------cccc---cccCCchhhhcccccCCceeccccccCCCCCCCCCCCCCcCCCCCCCCCC
Q 037231           26 IKSINVVGRI-------------EDEN---EMSMPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGP   89 (108)
Q Consensus        26 ~~s~~v~ec~-------------~~ee---E~~m~sE~sRR~L~~~~~yIsYgAL~~d~vPC~~~G~sY~nC~p~~~~~p   89 (108)
                      .|.|+|+||+             +++|   |++||||++||+|++ ++||||+||++|.+||+++|+|||||+++   +|
T Consensus        46 ~C~GsiaEC~~~~~~~~d~e~~~g~~~~~~e~~MdSE~sRR~L~~-~rYISYgALrrd~vPCsrrG~SYynC~~~---~p  121 (137)
T PLN03221         46 ECRGTIAECSVSAALGDDGDLFYGGGEMGAEFEMDSEINRRILAT-RRYISYGALRRNTIPCSRRGASYYNCRRG---AQ  121 (137)
T ss_pred             cccCCHHHHhhhhccccccccccccchhhhhhhcccHHHHHHHhc-CCccCHHHhccCCCCCCCCCCCccccCCC---CC
Confidence            3779999996             2222   779999999999987 68999999999999999999999999997   89


Q ss_pred             CCCCCCCCCccccccC
Q 037231           90 VNPYRRECSTSTNCER  105 (108)
Q Consensus        90 aNpY~RGCs~itrCrR  105 (108)
                      +|||+|||++||||||
T Consensus       122 ANPY~RGCs~ITRCrR  137 (137)
T PLN03221        122 ANPYSRGCSAITRCRR  137 (137)
T ss_pred             CCCCCCCcccccccCC
Confidence            9999999999999997

>PF05498 RALF: Rapid ALkalinization Factor (RALF) ; InterPro: IPR008801 RALF, a 5 kDa ubiquitous polypeptide in plants, arrests root growth and development

Probab=99.94  E-value=3.4e-28  Score=160.08  Aligned_cols=65  Identities=51%  Similarity=0.922  Sum_probs=61.1

Q ss_pred             ccccccCCchhhhcccccCCceeccccccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCccccccC
Q 037231           37 DENEMSMPTEESRRHLNAGQDCISYDAMLANKVPCSLKGHSYYDCRNRTGSGPVNPYRRECSTSTNCER  105 (108)
Q Consensus        37 ~eeE~~m~sE~sRR~L~~~~~yIsYgAL~~d~vPC~~~G~sY~nC~p~~~~~paNpY~RGCs~itrCrR  105 (108)
                      +|+|+.|+||++||+|+++ +||||+||++|.+||.++|.+|++|.++   +|+|||+|||++||||||
T Consensus         2 ee~~~~~~s~~~~R~~a~~-~yIsYgaL~~~~~pc~~~g~~~~~c~~~---~paNpY~RGC~~~~rCrr   66 (66)
T PF05498_consen    2 EEEEVVMESEASRRILAAR-RYISYGALRRDRVPCSPRGCSYYNCCPR---QPANPYSRGCSKITRCRR   66 (66)
T ss_pred             hhHHhhhhhHHHHHHHhcC-CeecchhccCCCCCCCcccCCCcccCCC---CCCCCCCCCCCccccCCC
Confidence            4678899999999999975 9999999999999999999999999887   999999999999999997

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=88.21  E-value=0.47  Score=33.08  Aligned_cols=15  Identities=40%  Similarity=0.516  Sum_probs=8.9

Q ss_pred             CCchhHHHHHHHHHH
Q 037231            1 MGSKEMSLVLLMMAV   15 (108)
Q Consensus         1 ~~~~~~~~~~~~~~~   15 (108)
                      |++|.+||+.++||+
T Consensus         1 MaSK~~llL~l~LA~   15 (95)
T PF07172_consen    1 MASKAFLLLGLLLAA   15 (95)
T ss_pred             CchhHHHHHHHHHHH
Confidence            899975554444333

Some of them may be involved in resistance to environmental stress [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00