Citrus Sinensis ID: 037250

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------
Protein Sequence
MAQFQFQLATVKPHHSFSFMPIAPLSISHKPFNFLPKSSTIKCLSNSPKLNLPIKLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL
Secondary Structure (PSIPRED)
ccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEccccEEccccEEEEEEcccccccccccccccEEEEEEEEccccccccccccHHHHHHHHcccccEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHcccccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHccccccEEccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAQFQfqlatvkphhsfsfmpiaplsishkpfnflpksstikclsnspklnlpiklrplrhpsltlrSRLVCNmsgsdmisqleldkpeerrkpkksvnGVFWIILLNLGLYVADHVFQVRSIKslylyhnfpaWYQFVTAAFCHANWNHLSSNLFFLYIFGKLveeeegnfGLWLSYIFTGAAANFVSWLILpknavsvgaSGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSgalfgvfl
Flexible Loop (DISEMBL)
MAQFQFQLATVKPHHSFSFMPIAPLSISHKPFNFLPKSSTIKClsnspklnlpiklrplrhpsLTLRSRLVCNMSGSDMisqleldkpeerrkpkksvngVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL
Low Complexity Region (SEG)
MAQFQFQLATVKPHHSFSFMPIAPLSISHKPFNFLPKSSTIKCLSNSPKLNLPIKLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL
Disordered region (IsUnstruct)
*****FQLATVKPHHSFSFMPIAPLSISHKPFNFLPKSSTIKCLSNSPKLNLPIKLRPLRHPSLTLRSRLVC*************************VNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKL*******FGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVF*
Disordered Region (DISOPRED)
*AQFQFQLATVKPH****************************CLSNSPKLNLPIKLRPLRHPSLTLRSRLVCN*********************KKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL
Disordered Region (DISEMBL)
MAQFQFQLATVKPHHSFSFMPIAPLSISHKPFNFLPKSSTIKCLSNSPKLNLPIKLRPLRHPSLTLRSRLVCNMSGSDMISQLELD*********KSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL
Disordered Region (DISPRO)
*AQFQFQLATVKPHHSFSFMPIAPLSISHKPFNFLPKSSTIKCLSNSPKLNLPIKLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQFQFQLATVKPHHSFSFMPIAPLSISHKPFNFLPKSSTIKCLSNSPKLNLPIKLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	277	2.2.26 [Sep-21-2011]
P96617	199	Putative rhomboid proteas	yes	no	0.281	0.391	0.333	3e-05
Q6IUY1	263	Rhomboid-like protease 3	N/A	no	0.646	0.680	0.271	0.0008

>sp|P96617|YDCA_BACSU Putative rhomboid protease YdcA OS=Bacillus subtilis (strain 168) GN=ydcA PE=3 SV=1

 Score = 49.3 bits (116), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 41/78 (52%)

Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
           W++ +T    HA + HL  N   +++F   +E   G     L Y  +G   N  +++  P
Sbjct: 58  WWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGTYVTEP 117

Query: 195 KNAVSVGASGAVFGLFAI 212
            + V VGASGA+FGLF +
Sbjct: 118 LDYVHVGASGAIFGLFGV 135

Bacillus subtilis (strain 168) (taxid: 224308)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -

>sp|Q6IUY1|RHBL3_TOXGO Rhomboid-like protease 3 OS=Toxoplasma gondii GN=ROM3 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 57/210 (27%), Positives = 92/210 (43%), Gaps = 31/210 (14%)

Query: 75  SGSDMISQLELDKPEER-RKPKKSV-------NGVFWIILLNLGLYVADHVFQVRSI--- 123
            GSD+ +Q  L+  +   R  K +V         + WI +  + +Y+   V   RS    
Sbjct: 5   DGSDVETQSLLNSGDRTLRSWKDTVFPGISWDKSIVWITVAQIIMYIISCVLS-RSYEPN 63

Query: 124 -KSLYL--------YHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGL 174
            ++L L        + NF  W + VT  F HA   HL  NL F+      +EE  G    
Sbjct: 64  ERTLMLLGAAYAPAFSNFQLW-RVVTPLFLHATILHLVLNLVFILHISLRLEERYGTKKF 122

Query: 175 WLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFA-----ISVL-VKMSWDWRKI--L 226
            ++Y  +    N +S L+ P  A+SVGAS A FG+       +SV+  K+S + ++I  +
Sbjct: 123 LVTYFLSAIVGNLLSMLMQPW-ALSVGASTAGFGIIGGMAAEVSVVWCKLSEELKRIYSM 181

Query: 227 EVLILGQFVVEKVMEAAQASAGMSGTFIGG 256
           ++ IL   +          + G  G F+ G
Sbjct: 182 DICILAVLIYFLSFGRTVDTFGHLGGFLAG 211

Serine protease involved in intramembrane proteolysis and the subsequent release of polypeptides from their membrane anchors.

Toxoplasma gondii (taxid: 5811)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 1

EC: 0

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
296081887	293	unnamed protein product [Vitis vinifera]	0.938	0.887	0.692	1e-103
255551048	308	conserved hypothetical protein [Ricinus	0.873	0.785	0.759	1e-101
22327066	280	rhomboid-like protein 11 [Arabidopsis th	0.851	0.842	0.729	4e-99
297812787	281	rhomboid family protein [Arabidopsis lyr	0.754	0.743	0.819	8e-99
225430025	222	PREDICTED: putative rhomboid protease yd	0.703	0.878	0.835	2e-93
224141791	226	predicted protein [Populus trichocarpa]	0.700	0.858	0.835	7e-93
359811335	281	uncharacterized protein LOC100781449 [Gl	0.855	0.843	0.677	9e-89
388504724	284	unknown [Lotus japonicus]	0.790	0.771	0.711	6e-88
449437036	220	PREDICTED: putative rhomboid protease Yd	0.682	0.859	0.815	2e-86
357436521	302	Rhomboid family protein (ISS) [Medicago	0.920	0.844	0.610	4e-86

>gi|296081887|emb|CBI20892.3| unnamed protein product [Vitis vinifera]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/283 (69%), Positives = 224/283 (79%), Gaps = 23/283 (8%)

Query: 1   MAQFQFQLA----TVK--PHHSFSFMPIAPLSISHKPFNFLPKSSTIKCLSNSPKLNLPI 54
           M QFQ  LA    T+K  P  S S +PI      +  F+ LP SS+++     P   LPI
Sbjct: 1   MGQFQQLLAHRPCTIKLMPMPSASLLPI------NAAFSKLPTSSSLRF--TPPTRLLPI 52

Query: 55  KLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEERRKPKKSVNGVFWIILLNLGLYVA 114
              P         SR VC M+GSD+ SQ+EL K   + KP++ VNG+FWIILLNLG++VA
Sbjct: 53  SAAP---------SRFVCKMNGSDLTSQMELGKSGGKWKPQRQVNGIFWIILLNLGIFVA 103

Query: 115 DHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGL 174
           DH+FQVR+IK+LYLYHN+PAWYQFVTA FCHANWNHLSSNLFFLYIFG+LVEEEEGNFGL
Sbjct: 104 DHLFQVRAIKTLYLYHNWPAWYQFVTATFCHANWNHLSSNLFFLYIFGRLVEEEEGNFGL 163

Query: 175 WLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQF 234
           WLSYI TGA AN VSWL+LP+NAVSVGASGAVFGLFAISVLVK+SWDWRKILEVLILGQF
Sbjct: 164 WLSYILTGAGANLVSWLVLPRNAVSVGASGAVFGLFAISVLVKISWDWRKILEVLILGQF 223

Query: 235 VVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
           V+EKVMEAAQAS G+SGTF+GGYS+QSINHIAHLSGAL GV L
Sbjct: 224 VIEKVMEAAQASTGLSGTFLGGYSIQSINHIAHLSGALIGVLL 266

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551048|ref|XP_002516572.1| conserved hypothetical protein [Ricinus communis] gi|223544392|gb|EEF45913.1| conserved hypothetical protein [Ricinus communis]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 186/245 (75%), Positives = 203/245 (82%), Gaps = 3/245 (1%)

Query: 35  LPKSSTIKCLSNS-PKLNLPIKLRPLRHPSL-TLRSRLVCNMSGSDMISQLELDKPEERR 92
           +P +S I+  S S PK N P    P   PS   L SR VC MSGSDMI  LELDKPE RR
Sbjct: 40  VPMASHIRPFSMSLPKTNFP-AYPPCLLPSFPALHSRFVCKMSGSDMIRPLELDKPEGRR 98

Query: 93  KPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLS 152
           KP+K  NG+FWIILLNLG+YVADH FQVR IKSLYLYHN P WYQF++A FCHA+W HLS
Sbjct: 99  KPQKQANGIFWIILLNLGIYVADHFFQVRGIKSLYLYHNRPTWYQFISATFCHASWEHLS 158

Query: 153 SNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAI 212
           SNLFFLYIFGKLVEEEEGNF LWLSYI TG  AN VSWL+LP+NAVSVGASGAVFGLFAI
Sbjct: 159 SNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANLVSWLVLPRNAVSVGASGAVFGLFAI 218

Query: 213 SVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGAL 272
           SVLVK++WDWRKILEVLILGQFV+EKVMEAAQASA +SGTF GGY +QS+NHIAHLSGAL
Sbjct: 219 SVLVKITWDWRKILEVLILGQFVIEKVMEAAQASAALSGTFRGGYPMQSVNHIAHLSGAL 278

Query: 273 FGVFL 277
            GV L
Sbjct: 279 IGVVL 283

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22327066|ref|NP_680221.1| rhomboid-like protein 11 [Arabidopsis thaliana] gi|30102632|gb|AAP21234.1| At5g25752 [Arabidopsis thaliana] gi|110736074|dbj|BAF00010.1| hypothetical protein [Arabidopsis thaliana] gi|332006096|gb|AED93479.1| rhomboid-like protein 11 [Arabidopsis thaliana]

 Score =  367 bits (941), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 175/240 (72%), Positives = 197/240 (82%), Gaps = 4/240 (1%)

Query: 32  FNFLPKSSTIKCLSNSPKLNLPIKLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEER 91
           F F P        S +     P++ RPL       RS++ C  S SD+  Q ELDK ++ 
Sbjct: 19  FRFPPLHRRRAASSPTNSTQPPLQFRPL----TVSRSQITCRFSQSDITPQFELDKAKDN 74

Query: 92  RKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHL 151
           RKP+K  NG+FWIIL+NLG+Y+ADH FQVR IKSLYLYHNFPAWYQFVTA FCHANWNHL
Sbjct: 75  RKPQKRANGIFWIILINLGIYLADHFFQVRGIKSLYLYHNFPAWYQFVTATFCHANWNHL 134

Query: 152 SSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFA 211
           SSNLFFLYIFGKLVEEEEGNFGLWLSY+FTG  AN VSWL+LP+NAVSVGASGAVFGLFA
Sbjct: 135 SSNLFFLYIFGKLVEEEEGNFGLWLSYLFTGVGANLVSWLVLPRNAVSVGASGAVFGLFA 194

Query: 212 ISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGA 271
           ISVLVKMSWDWRKILEVLILGQFV+E+VMEAAQASAG+SGT  GGYS+Q++NHIAHLSGA
Sbjct: 195 ISVLVKMSWDWRKILEVLILGQFVIERVMEAAQASAGLSGTIYGGYSLQTVNHIAHLSGA 254

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812787|ref|XP_002874277.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata] gi|297320114|gb|EFH50536.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  365 bits (938), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 172/210 (81%), Positives = 190/210 (90%), Gaps = 1/210 (0%)

Query: 63  SLTL-RSRLVCNMSGSDMISQLELDKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVR 121
           SLT+ RS++ C  S SD+  Q ELDK ++ RKP+K  NG+FWIIL+NLG+YVADH FQVR
Sbjct: 44  SLTVSRSQITCRFSQSDITPQFELDKAQDNRKPQKRANGIFWIILINLGIYVADHFFQVR 103

Query: 122 SIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFT 181
            IKSLYLYHNFPAWYQFVTA FCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSY+FT
Sbjct: 104 GIKSLYLYHNFPAWYQFVTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYLFT 163

Query: 182 GAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVME 241
           G  AN VSWL+LP+NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVE+VME
Sbjct: 164 GVGANLVSWLVLPRNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVERVME 223

Query: 242 AAQASAGMSGTFIGGYSVQSINHIAHLSGA 271
           AAQASAG+SGT  GGYS+Q++NHIAHLSGA
Sbjct: 224 AAQASAGLSGTIYGGYSLQTVNHIAHLSGA 253

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430025|ref|XP_002281548.1| PREDICTED: putative rhomboid protease ydcA-like [Vitis vinifera]

 Score =  347 bits (891), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 163/195 (83%), Positives = 182/195 (93%)

Query: 83  LELDKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAA 142
           +EL K   + KP++ VNG+FWIILLNLG++VADH+FQVR+IK+LYLYHN+PAWYQFVTA 
Sbjct: 1   MELGKSGGKWKPQRQVNGIFWIILLNLGIFVADHLFQVRAIKTLYLYHNWPAWYQFVTAT 60

Query: 143 FCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGA 202
           FCHANWNHLSSNLFFLYIFG+LVEEEEGNFGLWLSYI TGA AN VSWL+LP+NAVSVGA
Sbjct: 61  FCHANWNHLSSNLFFLYIFGRLVEEEEGNFGLWLSYILTGAGANLVSWLVLPRNAVSVGA 120

Query: 203 SGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSI 262
           SGAVFGLFAISVLVK+SWDWRKILEVLILGQFV+EKVMEAAQAS G+SGTF+GGYS+QSI
Sbjct: 121 SGAVFGLFAISVLVKISWDWRKILEVLILGQFVIEKVMEAAQASTGLSGTFLGGYSIQSI 180

Query: 263 NHIAHLSGALFGVFL 277
           NHIAHLSGAL GV L
Sbjct: 181 NHIAHLSGALIGVLL 195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141791|ref|XP_002324247.1| predicted protein [Populus trichocarpa] gi|222865681|gb|EEF02812.1| predicted protein [Populus trichocarpa]

 Score =  346 bits (887), Expect = 7e-93,   Method: Compositional matrix adjust.
 Identities = 162/194 (83%), Positives = 178/194 (91%)

Query: 78  DMISQLELDKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQ 137
           DM  QLEL KPEERRKP+K VNG+FWIIL+NLG++VADH+FQVR IKSLYLYHN+PAWYQ
Sbjct: 1   DMTRQLELGKPEERRKPEKRVNGIFWIILINLGMFVADHIFQVRHIKSLYLYHNWPAWYQ 60

Query: 138 FVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNA 197
           FVTA FCHA+W HLSSNLFFLYIFGKLVEEEEGNF LWLSYI TG  AN VSWL+LP+NA
Sbjct: 61  FVTATFCHASWEHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANLVSWLVLPRNA 120

Query: 198 VSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGY 257
           VSVGASGAVFGLFAISVLVK++WDWRKILEVLILGQFV+EKVMEAAQASA M+G F GGY
Sbjct: 121 VSVGASGAVFGLFAISVLVKITWDWRKILEVLILGQFVIEKVMEAAQASAAMTGPFRGGY 180

Query: 258 SVQSINHIAHLSGA 271
            VQ++NHIAHLSGA
Sbjct: 181 PVQTVNHIAHLSGA 194

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359811335|ref|NP_001240965.1| uncharacterized protein LOC100781449 [Glycine max] gi|255635279|gb|ACU17993.1| unknown [Glycine max]

 Score =  332 bits (852), Expect = 9e-89,   Method: Compositional matrix adjust.
 Identities = 166/245 (67%), Positives = 194/245 (79%), Gaps = 8/245 (3%)

Query: 30  KPFNFLPKSSTIKCLSNSPKLNLPIKLRPLRHPSLTLRSRLV---CNMSGSDMISQLELD 86
           KPF+ LP    ++  +  P LN           +L    R +   CN + SD++SQLEL 
Sbjct: 22  KPFHSLP---PLRTFTPKPSLNAKSHHHHHPLLTLLRSHRTLAPCCNSNKSDIMSQLELG 78

Query: 87  KPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHA 146
           KPE++ KP+K VNG+FWIILLN+ ++VADH F+V  IK+LYLYHN+P+WYQFVTA FCHA
Sbjct: 79  KPEQKGKPEKRVNGIFWIILLNIAIFVADHFFRVNGIKALYLYHNWPSWYQFVTATFCHA 138

Query: 147 NWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAV 206
           NW HLSSNLFFLYIFGKLVEEEEGNF LWLSYI TG  AN VSWL+LP+N VSVGASGAV
Sbjct: 139 NWKHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANLVSWLVLPRNTVSVGASGAV 198

Query: 207 FGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIA 266
           FGLF+ISVLVKMSWDWRKILEVLILGQFV+EKVMEAAQAS  +SG   GGY++QS+NHIA
Sbjct: 199 FGLFSISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTSLSGR--GGYALQSVNHIA 256

Query: 267 HLSGA 271
           HLSGA
Sbjct: 257 HLSGA 261

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388504724|gb|AFK40428.1| unknown [Lotus japonicus]

 Score =  330 bits (845), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 160/225 (71%), Positives = 181/225 (80%), Gaps = 6/225 (2%)

Query: 53  PIKLRPLRHPS-----LTLRSRLVCN-MSGSDMISQLELDKPEERRKPKKSVNGVFWIIL 106
           P     LRH       L  RS   C+ +  SD++ QLEL KPE +RKP+K  +G+FW+IL
Sbjct: 40  PFTRTALRHSHHSLSLLRFRSPTHCSKIKNSDLVPQLELGKPENKRKPEKRASGIFWVIL 99

Query: 107 LNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVE 166
           LN+G++VAD  FQV  IK++YLYHN P+WYQFVTA FCHANW HLSSNLFFLYI GKLVE
Sbjct: 100 LNIGIFVADKFFQVNGIKAMYLYHNRPSWYQFVTATFCHANWKHLSSNLFFLYISGKLVE 159

Query: 167 EEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKIL 226
           EEEGNF LWL YI TG  AN VSWLILP++ VSVGASGAVFGLF ISVLVKMSWDWRKIL
Sbjct: 160 EEEGNFALWLCYILTGVGANLVSWLILPRDIVSVGASGAVFGLFTISVLVKMSWDWRKIL 219

Query: 227 EVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGA 271
           EVLILGQFVVEKVMEAAQAS  ++GTF GGYS+QS+NHIAHLSGA
Sbjct: 220 EVLILGQFVVEKVMEAAQASTSLTGTFRGGYSLQSVNHIAHLSGA 264

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437036|ref|XP_004136298.1| PREDICTED: putative rhomboid protease YdcA-like [Cucumis sativus]

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 155/190 (81%), Positives = 171/190 (90%), Gaps = 1/190 (0%)

Query: 82  QLELDKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTA 141
           QLEL KP + RK +K VNG+FWIILLN+G+YVADHVFQVR+I +LYLYH+ PAWYQF TA
Sbjct: 2   QLELGKPLQNRKTEKRVNGIFWIILLNIGIYVADHVFQVRNIGALYLYHSRPAWYQFFTA 61

Query: 142 AFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVG 201
            FCHANWNHLSSNLFFLYIFGKLVEEEEGNF LWLSYI TG  AN VSWLILP+NAVSVG
Sbjct: 62  TFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSWLILPRNAVSVG 121

Query: 202 ASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQS 261
           ASGAVFGLF ISVLVKMSWDWRKILEVLILGQFV+EKVMEAAQAS  +SG+F  GYS+Q+
Sbjct: 122 ASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALSGSF-RGYSLQN 180

Query: 262 INHIAHLSGA 271
           +NH+AHLSGA
Sbjct: 181 VNHVAHLSGA 190

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357436521|ref|XP_003588536.1| Rhomboid family protein (ISS) [Medicago truncatula] gi|355477584|gb|AES58787.1| Rhomboid family protein (ISS) [Medicago truncatula]

 Score =  323 bits (829), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 179/293 (61%), Positives = 207/293 (70%), Gaps = 38/293 (12%)

Query: 1   MAQFQFQLATVKPHHSF---SFMPIAP-LSISHKPFNFLPKSSTIKCLSNSPKLNLPIKL 56
           +A F+F  +  KP H F   SF  + P  SI + P      + T  CLS+    NLP   
Sbjct: 6   VATFKFNNSFYKPIHHFRTPSFSSVPPTFSIKNFP------NITYPCLSHHSLFNLP--- 56

Query: 57  RPLRHPSLTLRSRLVCNMSGSDMISQLELDKPE-ERRKPKKSVNGVFWIILLNLGLYVAD 115
                PSLTL +    N + SDMISQLE+ KPE  +R+P K VNG+FWIILLN+G++VAD
Sbjct: 57  ----SPSLTLCNN---NNNKSDMISQLEVAKPELNKREPVKRVNGIFWIILLNIGIFVAD 109

Query: 116 HVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGK------------ 163
           H FQV  IK+LYL+H+ P W+QF+TA FCHANW HLSSNLFFLYIFGK            
Sbjct: 110 HFFQVGGIKALYLFHSRPDWFQFLTATFCHANWKHLSSNLFFLYIFGKAVIRMNVCYFVA 169

Query: 164 -----LVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKM 218
                LVEEE G+F LWLSYI TG  AN VSWLILP+N VSVGASGAVFGLF ISVLVKM
Sbjct: 170 FATGKLVEEEGGSFALWLSYILTGVGANLVSWLILPRNTVSVGASGAVFGLFTISVLVKM 229

Query: 219 SWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGA 271
           SWDWRKILEVLILGQFVVEKVMEAAQAS  + GTF GGY++Q++NHIAHLSGA
Sbjct: 230 SWDWRKILEVLILGQFVVEKVMEAAQASTSLPGTFRGGYALQNVNHIAHLSGA 282

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	277
TAIR|locus:504956416	280	RBL11 "rhomboid-like protein 1	0.873	0.864	0.727	2.6e-95
TAIR|locus:2179454	102	AT5G25640 [Arabidopsis thalian	0.306	0.833	0.670	1.2e-26
UNIPROTKB|Q81VF8	190	BAS0235 "Rhomboid family prote	0.328	0.478	0.308	9.9e-14
TIGR_CMR|BA_0249	190	BA_0249 "rhomboid family prote	0.328	0.478	0.308	9.9e-14
TIGR_CMR|SPO_3011	247	SPO_3011 "peptidase, S54 (rhom	0.509	0.570	0.310	1.1e-11
UNIPROTKB|Q74EV8	241	GSU0851 "Rhomboid-related memb	0.527	0.605	0.258	1.4e-07
TIGR_CMR|GSU_0851	241	GSU_0851 "rhomboid family prot	0.527	0.605	0.258	1.4e-07
UNIPROTKB|Q97NE9	225	SP_2094 "Putative uncharacteri	0.581	0.715	0.265	1.7e-07
UNIPROTKB|Q3ADW0	236	CHY_0820 "Rhomboid family prot	0.494	0.580	0.303	7.2e-07
TIGR_CMR|CHY_0820	236	CHY_0820 "rhomboid family prot	0.494	0.580	0.303	7.2e-07

TAIR|locus:504956416 RBL11 "rhomboid-like protein 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 948 (338.8 bits), Expect = 2.6e-95, P = 2.6e-95
 Identities = 179/246 (72%), Positives = 201/246 (81%)

Query:    32 FNFLPKSSTIKCLSNSPKLNLPIKLRPLRHPSLTLRSRLVCNMSGSDMISQLELDKPEER 91
             F F P        S +     P++ RPL       RS++ C  S SD+  Q ELDK ++ 
Sbjct:    19 FRFPPLHRRRAASSPTNSTQPPLQFRPLT----VSRSQITCRFSQSDITPQFELDKAKDN 74

Query:    92 RKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHANWNHL 151
             RKP+K  NG+FWIIL+NLG+Y+ADH FQVR IKSLYLYHNFPAWYQFVTA FCHANWNHL
Sbjct:    75 RKPQKRANGIFWIILINLGIYLADHFFQVRGIKSLYLYHNFPAWYQFVTATFCHANWNHL 134

Query:   152 SSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFA 211
             SSNLFFLYIFGKLVEEEEGNFGLWLSY+FTG  AN VSWL+LP+NAVSVGASGAVFGLFA
Sbjct:   135 SSNLFFLYIFGKLVEEEEGNFGLWLSYLFTGVGANLVSWLVLPRNAVSVGASGAVFGLFA 194

Query:   212 ISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGA 271
             ISVLVKMSWDWRKILEVLILGQFV+E+VMEAAQASAG+SGT  GGYS+Q++NHIAHLSGA
Sbjct:   195 ISVLVKMSWDWRKILEVLILGQFVIERVMEAAQASAGLSGTIYGGYSLQTVNHIAHLSGA 254

Query:   272 LFGVFL 277
             L GV L
Sbjct:   255 LVGVVL 260

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0009706 "chloroplast inner membrane" evidence=IDA

GO:0080140 "regulation of jasmonic acid metabolic process" evidence=IMP

TAIR|locus:2179454 AT5G25640 [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 57/85 (67%), Positives = 69/85 (81%)

Query:   158 LYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVK 217
             L++ GK+VEEE+GNFGLWLSY+FTG  AN VSW  LP N+   GASGAVFGLF ISVLVK
Sbjct:     5 LWLTGKIVEEEKGNFGLWLSYLFTGVGANMVSWFTLPPNSFFSGASGAVFGLFVISVLVK 64

Query:   218 MSWDWRKILEVLILGQFVVEKVMEA 242
             MS  W K LEVLILGQFV+++ +++
Sbjct:    65 MSRGWSKFLEVLILGQFVMKRFIDS 89

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q81VF8 BAS0235 "Rhomboid family protein" [Bacillus anthracis (taxid:1392)]

 Score = 159 (61.0 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
 Identities = 29/94 (30%), Positives = 49/94 (52%)

Query:   129 YHNFPA---WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAA 185
             YH + A   W++ +T+ F H +  H  SN   L++ G  +E++ G F   + +  +G   
Sbjct:    38 YHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSFIIIFFLSGILG 97

Query:   186 NFVSWLILPKNAVSVGASGAVFGLFAISVLVKMS 219
             N  S+LI+P   +  GASG +FGL    + +  S
Sbjct:    98 NIFSYLIMPHEYIHAGASGGIFGLLGAQLFLLYS 131

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_0249 BA_0249 "rhomboid family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 159 (61.0 bits), Expect = 9.9e-14, Sum P(2) = 9.9e-14
 Identities = 29/94 (30%), Positives = 49/94 (52%)

Query:   129 YHNFPA---WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAA 185
             YH + A   W++ +T+ F H +  H  SN   L++ G  +E++ G F   + +  +G   
Sbjct:    38 YHEYIANGEWWRLITSLFVHVDLQHFLSNSICLFVLGSSIEKQLGRFSFIIIFFLSGILG 97

Query:   186 NFVSWLILPKNAVSVGASGAVFGLFAISVLVKMS 219
             N  S+LI+P   +  GASG +FGL    + +  S
Sbjct:    98 NIFSYLIMPHEYIHAGASGGIFGLLGAQLFLLYS 131

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_3011 SPO_3011 "peptidase, S54 (rhomboid) family" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 171 (65.3 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 46/148 (31%), Positives = 70/148 (47%)

Query:   135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
             W   VT+ F H  W HL  N+ FL+IFG  +E+E G+ G  L Y+  G  A  +  L  P
Sbjct:    61 WQTLVTSIFLHGGWMHLGGNMLFLWIFGDNLEDEMGHLGFALFYLAAGIGAGLIHVLSGP 120

Query:   195 KNAV-SVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTF 253
              + V ++GASGA+ G+     L+        IL +L +  F +  +       A +   F
Sbjct:   121 GSMVPTIGASGAIAGVMG-GYLLLFPRARVDILLILFV-YFRIFTIPAFVMLGAWLGFQF 178

Query:   254 IGGYSVQ----SINHIAHLSGALFGVFL 277
             +GG+S       + + AH  G   G+ L
Sbjct:   179 LGGFSSDPDTGGVAYWAHTGGFAVGLVL 206

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0006464 "cellular protein modification process" evidence=ISS

UNIPROTKB|Q74EV8 GSU0851 "Rhomboid-related membrane protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 140 (54.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 39/151 (25%), Positives = 71/151 (47%)

Query:   130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS 189
             H   A    +T+ F H NW H+ SN+ +L+IFG  VE+  G F   + Y+  GA A    
Sbjct:    72 HPLLALPTIITSMFLHGNWLHIGSNMLYLWIFGNNVEDVLGRFRFVVFYLGCGAVAALAQ 131

Query:   190 WLILPKNAVS-VGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEK---VMEAAQA 245
                 P + +  VGASGAV G+    +L+        ++ ++    F+      ++     
Sbjct:   132 VASAPGSDIPMVGASGAVAGVMGAYLLLFPHARILTLVPIIFFFTFIEVPAFIIIGWWVL 191

Query:   246 SAGMSGTFIGGYSVQS-INHIAHLSGALFGV 275
                ++  ++GG  ++  + + AH+ G + G+
Sbjct:   192 IQFLNANWLGGGELRGGVAYFAHIGGFVAGI 222

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_0851 GSU_0851 "rhomboid family protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 140 (54.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 39/151 (25%), Positives = 71/151 (47%)

Query:   130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVS 189
             H   A    +T+ F H NW H+ SN+ +L+IFG  VE+  G F   + Y+  GA A    
Sbjct:    72 HPLLALPTIITSMFLHGNWLHIGSNMLYLWIFGNNVEDVLGRFRFVVFYLGCGAVAALAQ 131

Query:   190 WLILPKNAVS-VGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEK---VMEAAQA 245
                 P + +  VGASGAV G+    +L+        ++ ++    F+      ++     
Sbjct:   132 VASAPGSDIPMVGASGAVAGVMGAYLLLFPHARILTLVPIIFFFTFIEVPAFIIIGWWVL 191

Query:   246 SAGMSGTFIGGYSVQS-INHIAHLSGALFGV 275
                ++  ++GG  ++  + + AH+ G + G+
Sbjct:   192 IQFLNANWLGGGELRGGVAYFAHIGGFVAGI 222

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q97NE9 SP_2094 "Putative uncharacterized protein" [Streptococcus pneumoniae TIGR4 (taxid:170187)]

 Score = 138 (53.6 bits), Expect = 1.7e-07, P = 1.7e-07
 Identities = 48/181 (26%), Positives = 85/181 (46%)

Query:   101 VFWIILLNLG--LYVADHVFQVRSIKSLYLYHNFP--AWYQFVTAAFCHANWNHLSSNLF 156
             VF ++L+  G     AD +F+  ++    +   FP   W + ++A F H  W H   N+ 
Sbjct:    22 VFLLMLVTAGGNFDRADTLFRFGAMYGPAI-RLFPEQVW-RLLSAIFVHIGWEHFIVNML 79

Query:   157 FLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLV 216
              LY  G+ VEE  G+   +  Y+ +G   N   ++  PK+ ++ GAS +++GLFA  +++
Sbjct:    80 SLYYLGRQVEEIFGSKQFFFLYLLSGMMGNLFVFVFSPKS-LAAGASTSLYGLFAAIIVL 138

Query:   217 KMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVF 276
             + +     I +   LGQ  +   +             IG   +  I+   H+ GA+ G F
Sbjct:   139 RYATRNPYIQQ---LGQSYLTLFVV----------NIIGSVLIPGISLAGHIGGAVGGAF 185

Query:   277 L 277
             L
Sbjct:   186 L 186

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q3ADW0 CHY_0820 "Rhomboid family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 134 (52.2 bits), Expect = 7.2e-07, P = 7.2e-07
 Identities = 44/145 (30%), Positives = 72/145 (49%)

Query:   140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI-LPKNAV 198
             T+ F H ++ HL SN++ L++FG  VEE  G+    L Y  +G  A    ++     + V
Sbjct:    74 TSMFLHGSFIHLISNMWALWLFGDNVEERMGHLKFLLFYFLSGIVAMTAHYVFNFASDIV 133

Query:   199 SVGASGAVFGL----FAISVLVKMSWDWRKI-LEVLI-LGQFVVEKVMEAAQASAGMSGT 252
             +VGASGA+ G+    F +  L K+   +  I + + I +  F+   +   +Q S G+  T
Sbjct:   134 AVGASGAIAGVMGAYFVLFPLAKIVTLFFLIFIPIFIDVPAFIYIGLWYISQLSNGIL-T 192

Query:   253 FIGGYSVQSINHIAHLSGALFGVFL 277
               G      I   AH+ G LFG+ +
Sbjct:   193 LFGPVFGFGIAWWAHIGGFLFGILV 217

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CHY_0820 CHY_0820 "rhomboid family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 134 (52.2 bits), Expect = 7.2e-07, P = 7.2e-07
 Identities = 44/145 (30%), Positives = 72/145 (49%)

Query:   140 TAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLI-LPKNAV 198
             T+ F H ++ HL SN++ L++FG  VEE  G+    L Y  +G  A    ++     + V
Sbjct:    74 TSMFLHGSFIHLISNMWALWLFGDNVEERMGHLKFLLFYFLSGIVAMTAHYVFNFASDIV 133

Query:   199 SVGASGAVFGL----FAISVLVKMSWDWRKI-LEVLI-LGQFVVEKVMEAAQASAGMSGT 252
             +VGASGA+ G+    F +  L K+   +  I + + I +  F+   +   +Q S G+  T
Sbjct:   134 AVGASGAIAGVMGAYFVLFPLAKIVTLFFLIFIPIFIDVPAFIYIGLWYISQLSNGIL-T 192

Query:   253 FIGGYSVQSINHIAHLSGALFGVFL 277
               G      I   AH+ G LFG+ +
Sbjct:   193 LFGPVFGFGIAWWAHIGGFLFGILV 217

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.691
3rd Layer	3.4.21.105	0.737

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	277
pfam01694	146	pfam01694, Rhomboid, Rhomboid family	6e-20
COG0705	228	COG0705, COG0705, Membrane associated serine prote	8e-17
TIGR03902	154	TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CT	1e-09
PTZ00101	278	PTZ00101, PTZ00101, rhomboid-1 protease; Provision	0.003

>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family

 Score = 83.4 bits (207), Expect = 6e-20
 Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 12/143 (8%)

Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
            ++ +T+ F HA W HL  N+  L  FG  +E   G+    L Y+ +G A + +S+L  P
Sbjct: 7   LWRLITSMFLHAGWLHLLFNMLALLFFGIPLERILGSVRFLLLYLLSGLAGSLLSYLFSP 66

Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFI 254
            ++ SVGASGA+FGL   ++LV +  +   +         ++  ++        +   F+
Sbjct: 67  ASSPSVGASGAIFGLLG-ALLVLLPRNRILLFNFPGALLLLLGIIL------LNLLLGFL 119

Query: 255 GGYSVQSINHIAHLSGALFGVFL 277
            G     I++ AHL G + G+ L
Sbjct: 120 PG-----ISNFAHLGGLIAGLLL 137

This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. Length = 146

>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]

 Score = 77.1 bits (190), Expect = 8e-17
 Identities = 43/151 (28%), Positives = 63/151 (41%), Gaps = 7/151 (4%)

Query: 128 LYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANF 187
                   ++ +TA F HA + HL  N+  L++FG  +E   G     L Y+ +G  A  
Sbjct: 61  GALARDQLWRLITAIFLHAGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGL 120

Query: 188 VSWLILPKN-AVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQAS 246
              L  PK  A S+GASGA+FGL     L  +    R    +L+L   +    +      
Sbjct: 121 AQVLFGPKGGAPSLGASGAIFGLLGAYFL--LFPFAR----ILLLFLSLPRPALILILIW 174

Query: 247 AGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
              S     G    S+   AHL G + G+ L
Sbjct: 175 LLYSLFSGAGSFGPSVAWSAHLGGLIGGLLL 205

Length = 228

>gnl|CDD|234388 TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CTERM serine protease

 Score = 55.3 bits (134), Expect = 1e-09
 Identities = 42/144 (29%), Positives = 60/144 (41%), Gaps = 8/144 (5%)

Query: 135 WYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILP 194
           W++ +T  F H NW HL  NL  L +   L E       L L  +      +    L LP
Sbjct: 16  WWRLLTGHFVHLNWWHLLMNLAGLLLLWLLFERHLRARRLLLLLLLLSLLISLGLLLFLP 75

Query: 195 KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVM-EAAQASAGMSGTF 253
                VG SG + GLFA   L  + +  R    +L+    V+ K+  E    ++  +   
Sbjct: 76  SLQWYVGLSGVLHGLFAWGALRDIRYGRRSGWLLLLG---VIAKLAWEQLFGASASTAEL 132

Query: 254 IGGYSVQSINHIAHLSGALFGVFL 277
           IG          AHL+GAL G+ L
Sbjct: 133 IGAPVA----TEAHLAGALSGLLL 152

This model describes a rhomboid-like intramembrane serine protease. Its species distribution closely matches model TIGR03501, GlyGly-CTERM, which describes a protein targeting domain analogous to LPXTG and PEP-CTERM. In a number of species (Ralstonia eutropha ,R. metallidurans, R. solanacearum, Marinobacter aquaeolei, etc) with just one GlyGly-CTERM protein (i.e., a dedicated system), the rhombosortase and GlyGly-CTERM genes are adjacent. Length = 154

>gnl|CDD|185445 PTZ00101, PTZ00101, rhomboid-1 protease; Provisional

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 62/249 (24%), Positives = 99/249 (39%), Gaps = 35/249 (14%)

Query: 29  HKPFNFLPKSSTIKCLSNSPKLNLPIKLRPLRHPSLTLRSRLVCNMSGSDMISQL--ELD 86
           + PFN   K    +  S+  + + PI +  L  P  T +S  +  +S   +I  +     
Sbjct: 17  NTPFNRAEKYY--QSQSSFIQRSKPIDVLNLIFPHFTWKS-FIMAISIIQIIVFIISVSI 73

Query: 87  KPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPAWYQFVTAAFCHA 146
           KP +   P  S       +L+ LG  VA  + Q                ++ +   F HA
Sbjct: 74  KPADFLTPSDS-------LLVTLGANVASRIKQGEI-------------HRLILPIFLHA 113

Query: 147 NWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAV 206
           N  H   N+FF    G  +E+  G   + + Y  TG   N +S  +     + VGAS + 
Sbjct: 114 NIFHTFFNVFFQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSVT-YCPIKVGASTSG 172

Query: 207 FGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIA 266
            GL  I V  ++   W  I       + VV  ++  +  S     TF G     +I+H+ 
Sbjct: 173 MGLLGI-VTSELILLWHVIRH----RERVVFNIIFFSLISFFYYFTFNGS----NIDHVG 223

Query: 267 HLSGALFGV 275
           HL G L G+
Sbjct: 224 HLGGLLSGI 232

Length = 278

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	277
PTZ00101	278	rhomboid-1 protease; Provisional	99.95
PRK10907	276	intramembrane serine protease GlpG; Provisional	99.95
COG0705	228	Membrane associated serine protease [Amino acid tr	99.91
KOG2289	316	consensus Rhomboid family proteins [Signal transdu	99.82
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	99.82
KOG2632	258	consensus Rhomboid family proteins [Function unkno	99.61
KOG2290	652	consensus Rhomboid family proteins [Signal transdu	99.47
KOG2980	310	consensus Integral membrane protease of the rhombo	99.07
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	98.12
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	97.96
KOG0858	239	consensus Predicted membrane protein [Function unk	96.85
KOG4463	323	consensus Uncharacterized conserved protein [Funct	94.82
KOG2890	326	consensus Predicted membrane protein [Function unk	94.62
COG5291	313	Predicted membrane protein [Function unknown]	93.97

>PTZ00101 rhomboid-1 protease; Provisional

Probab=99.95  E-value=6.2e-28  Score=219.70  Aligned_cols=187  Identities=19%  Similarity=0.218  Sum_probs=133.8

Q ss_pred             CccccccCCcccccCCCCchhHHHHHHHHHHHHHHHHHHhhhh----hhh-hhh-------hhccCCCcceeeecccccC
Q 037250           79 MISQLELDKPEERRKPKKSVNGVFWIILLNLGLYVADHVFQVR----SIK-SLY-------LYHNFPAWYQFVTAAFCHA  146 (277)
Q Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~t~~lI~ln~~vfl~~~~~~~~----~~~-~~~-------~~~~~~~~wrl~Ts~F~H~  146 (277)
                      ..+.+.+++.|.+..+.+.+++|..|+++|+++|++....+..    +.. ...       ....++||||++|++|+|.
T Consensus        34 ~~~~~~i~~ler~Fp~f~i~~l~~~Iiii~iivfil~l~~~~~~~l~p~~~~L~~~Ga~~~~~i~~gq~WRLiT~~FlH~  113 (278)
T PTZ00101         34 IQRSKPIDVLNLIFPHFTWKSFIMAISIIQIIVFIISVSIKPADFLTPSDSLLVTLGANVASRIKQGEIHRLILPIFLHA  113 (278)
T ss_pred             cccCCChHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHhcccccCCCCHHHHHHHhCcchhhhhcCCCHHHHHHHHHcc
Confidence            3445557788888889999999999999999999987653211    000 111       1124689999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceeechHHHHHHHHHHHHHHh-hchhhH-H
Q 037250          147 NWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVK-MSWDWR-K  224 (277)
Q Consensus       147 ~~~HL~~Nm~~l~~~G~~le~~~G~~~~l~~yl~s~~~g~l~~~~~~~~~~~~~GaSG~ifgl~g~~~~l~-~~~~~~-~  224 (277)
                      ++.|+++||+.++.+|..+|+.+|++|++.+|+++|++|++++....+. ..++||||++||++|+..... ..|... .
T Consensus       114 ~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~~~~-~~svGASgAifGLiGa~~~~lil~w~~~~~  192 (278)
T PTZ00101        114 NIFHTFFNVFFQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSVTYC-PIKVGASTSGMGLLGIVTSELILLWHVIRH  192 (278)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHccC-CcEEehhHHHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999999999999999999999887653 468999999999999976421 111110 0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcccceecCCCCchhhHHHHHHHHHHHHhC
Q 037250          225 ILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL  277 (277)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vs~~aHLgG~l~G~ll  277 (277)
                      .... ......+ .++....         ......+++|+.||+||+++|+++
T Consensus       193 ~~~~-~~~~i~~-~li~~~l---------~~~~~g~~Id~~aHlGG~i~G~ll  234 (278)
T PTZ00101        193 RERV-VFNIIFF-SLISFFY---------YFTFNGSNIDHVGHLGGLLSGISM  234 (278)
T ss_pred             HHHH-HHHHHHH-HHHHHHH---------HHhcCCCCccHHHHHHHHHHHHHH
Confidence            0011 1000011 1110000         011123789999999999999863

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=99.95  E-value=7.3e-27  Score=212.87  Aligned_cols=168  Identities=15%  Similarity=0.135  Sum_probs=123.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhh----hccCCCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhhh
Q 037250           96 KSVNGVFWIILLNLGLYVADHVFQVRSIKSLYL----YHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGN  171 (277)
Q Consensus        96 ~~~~~t~~lI~ln~~vfl~~~~~~~~~~~~~~~----~~~~~~~wrl~Ts~F~H~~~~HL~~Nm~~l~~~G~~le~~~G~  171 (277)
                      +..|+|..++++|++||++..+...........    ....+||||++|++|+|.|+.|+++||+.+|.+|+.+|+.+|+
T Consensus        92 ~~~p~T~~li~i~i~vf~l~~~~~~~~~~~~l~~~~~~~~~~q~WRl~T~~flH~~~~Hl~fNml~l~~lG~~iE~~~G~  171 (276)
T PRK10907         92 RAGPLTLGVMIACVVVFILMQILGDQTVMLWLAWPFDPSLKFELWRYFTHALLHFSLLHILFNLLWWWYLGGAVEKRLGS  171 (276)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHhccHHHHHHHhccccccccCCcHHHHhHHHHhCCHHHHHHHHHHHHHHHHHHHHHHCh
Confidence            356799999999999999987754432222211    1246899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCceeechHHHHHHHHHHHHHHhhchhhHHHH-HHHHHHHHHHHHHHHHHHhhhhcc
Q 037250          172 FGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKIL-EVLILGQFVVEKVMEAAQASAGMS  250 (277)
Q Consensus       172 ~~~l~~yl~s~~~g~l~~~~~~~~~~~~~GaSG~ifgl~g~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~  250 (277)
                      ++++.+|++++++|+++++++.+.  ..+|+||++||++|+......+.+.+... ....+...++.+..+..       
T Consensus       172 ~~~l~l~l~s~i~~~~~~~~~~~~--~~gGaSGvVygL~g~~~~~~~~~p~~~~~lp~~~~~f~llwl~~g~~-------  242 (276)
T PRK10907        172 GKLIVITLISALLSGWVQSKFSGP--WFGGLSGVVYALMGYVWLRGERDPQSGIYLPRGLIAFALLWLVAGYF-------  242 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccc--hhhHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHH-------
Confidence            999999999999999998887643  47899999999999866544332322211 11111112222222111       


Q ss_pred             cceecCCCCchhhHHHHHHHHHHHHhC
Q 037250          251 GTFIGGYSVQSINHIAHLSGALFGVFL  277 (277)
Q Consensus       251 ~~~~~~~~~~~vs~~aHLgG~l~G~ll  277 (277)
                      +     ...++|++.||++|+++|+++
T Consensus       243 ~-----~~g~~Ian~AHlgGli~Gll~  264 (276)
T PRK10907        243 D-----LFGMSIANAAHVAGLAVGLAM  264 (276)
T ss_pred             H-----ccCcccHHHHHHHHHHHHHHH
Confidence            1     123689999999999999863

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=99.91  E-value=1.2e-23  Score=186.55  Aligned_cols=171  Identities=27%  Similarity=0.371  Sum_probs=125.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHhhhhhhhh---------hhh--hc-cCC--CcceeeecccccCChhHHHHHHHHHHHHH
Q 037250           97 SVNGVFWIILLNLGLYVADHVFQVRSIKS---------LYL--YH-NFP--AWYQFVTAAFCHANWNHLSSNLFFLYIFG  162 (277)
Q Consensus        97 ~~~~t~~lI~ln~~vfl~~~~~~~~~~~~---------~~~--~~-~~~--~~wrl~Ts~F~H~~~~HL~~Nm~~l~~~G  162 (277)
                      ..+.+..++++|+++|+............         .+.  .. ...  |+||++|++|+|.|+.|+++||+.+|.+|
T Consensus        16 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~lit~~FlH~~~~Hll~N~~~l~~fg   95 (228)
T COG0705          16 APPVTLFLILLNILVFLLELVLGWSAIFLLTFLFRLFGLYPLNLLGALARDQLWRLITAIFLHAGFLHLLFNMLALWVFG   95 (228)
T ss_pred             cchHHHHHHHHHHHHHHHHHHccchHHHHHHHhhhHHhhcchhhhccccccchHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence            57899999999999999987665432211         110  11 112  89999999999999999999999999999


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcCCC-ceeechHHHHHHHHHHHHHHhhchhhHHHH---HHHHHHHHHHHH
Q 037250          163 KLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKN-AVSVGASGAVFGLFAISVLVKMSWDWRKIL---EVLILGQFVVEK  238 (277)
Q Consensus       163 ~~le~~~G~~~~l~~yl~s~~~g~l~~~~~~~~~-~~~~GaSG~ifgl~g~~~~l~~~~~~~~~~---~~~~~~~~~~~~  238 (277)
                      ..+|+..|+.+|+.+|+.+|+++++....+.+.. .+++||||+++|++|+++...+..+.....   .......+.+..
T Consensus        96 ~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~~~~~~~~GASG~i~gllga~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  175 (228)
T COG0705          96 SNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPALILILIWL  175 (228)
T ss_pred             HHHHHHhchhHHHHHHHHHHHHHHHHHHHHcccccCcccchhHHHHHHHHHHHHHccccchhhhhccCchhHHHHHHHHH
Confidence            9999999999999999999999999999888765 478999999999999999876543322111   011111112222


Q ss_pred             HHHHHHhhhhcccceecCCCCchhhHHHHHHHHHHHHh
Q 037250          239 VMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVF  276 (277)
Q Consensus       239 ~~~~~~~~~~l~~~~~~~~~~~~vs~~aHLgG~l~G~l  276 (277)
                      +......      ...   ..++|++.||++|+++|++
T Consensus       176 ~~~~~~~------~~~---~~~~va~~aHl~G~i~G~l  204 (228)
T COG0705         176 LYSLFSG------AGS---FGPSVAWSAHLGGLIGGLL  204 (228)
T ss_pred             HHHHHHH------hcC---CchHHHHHHHHHHHHHHHH
Confidence            2221111      000   1158999999999999986

>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=99.82  E-value=1.7e-21  Score=179.37  Aligned_cols=87  Identities=29%  Similarity=0.395  Sum_probs=81.3

Q ss_pred             hhccCCCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceeechHHHHH
Q 037250          128 LYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVF  207 (277)
Q Consensus       128 ~~~~~~~~wrl~Ts~F~H~~~~HL~~Nm~~l~~~G~~le~~~G~~~~l~~yl~s~~~g~l~~~~~~~~~~~~~GaSG~if  207 (277)
                      .....+|+||++||+|+|+|+.||.+||+.+..+|..+|+.+|.+|+..+|+.+++.|++++.++.+. ..++||||++|
T Consensus       112 ~~~~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~d~~-~~sVGASggvf  190 (316)
T KOG2289|consen  112 KPVHRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLFDPN-SISVGASGGVF  190 (316)
T ss_pred             ChhhhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHhccC-CceecccHHHH
Confidence            34467899999999999999999999999999999999999999999999999999999999999774 46999999999


Q ss_pred             HHHHHHHH
Q 037250          208 GLFAISVL  215 (277)
Q Consensus       208 gl~g~~~~  215 (277)
                      ||+|+.+.
T Consensus       191 aLlgA~Ls  198 (316)
T KOG2289|consen  191 ALLGAHLS  198 (316)
T ss_pred             HHHHHHHH
Confidence            99999875

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.82  E-value=4e-21  Score=157.80  Aligned_cols=134  Identities=32%  Similarity=0.532  Sum_probs=94.6

Q ss_pred             cCCCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceeechHHHHHHHH
Q 037250          131 NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLF  210 (277)
Q Consensus       131 ~~~~~wrl~Ts~F~H~~~~HL~~Nm~~l~~~G~~le~~~G~~~~l~~yl~s~~~g~l~~~~~~~~~~~~~GaSG~ifgl~  210 (277)
                      +++|+||++|++|.|.|+.|+++|++.++.+|..+|+.+|+++++.+|+.+++.+++...+..+.....+|+||+++|++
T Consensus         2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~Sg~~~~l~   81 (145)
T PF01694_consen    2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSPPNQPYVGASGAVFGLL   81 (145)
T ss_dssp             GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----SSHHHHHHHH
T ss_pred             CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccccccccCCCcccchHHH
Confidence            46899999999999999999999999999999999999999999999999999999999888776557899999999999


Q ss_pred             HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccceecCCCCchhhHHHHHHHHHHHHh
Q 037250          211 AISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVF  276 (277)
Q Consensus       211 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vs~~aHLgG~l~G~l  276 (277)
                      ++.+...++.+.+.................           .+..+. .+++++.+|++|+++|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~-~~~~~~~~hl~G~~~G~~  135 (145)
T PF01694_consen   82 GAFLFLYPQNKKRLRFIYLALVVPIIVLVI-----------ILLLGF-IPNISFLGHLGGFLAGLL  135 (145)
T ss_dssp             HHHHHHHHCCCCCS---HCCCCCCCCCCCH-----------HHCTSS-SSTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccchhhcchHHHHHHHHHHHH-----------HHHHHH-HHhHHHHHHHHHHHHHHH
Confidence            998876654322211100000000000000           001111 588999999999999986

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG2632 consensus Rhomboid family proteins [Function unknown]

Probab=99.61  E-value=1.4e-15  Score=135.52  Aligned_cols=170  Identities=16%  Similarity=0.207  Sum_probs=119.5

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHHHhhhhh-hhhhhhhccCCCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhh-h
Q 037250           94 PKKSVNGVFWIILLNLGLYVADHVFQVRS-IKSLYLYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEG-N  171 (277)
Q Consensus        94 ~~~~~~~t~~lI~ln~~vfl~~~~~~~~~-~~~~~~~~~~~~~wrl~Ts~F~H~~~~HL~~Nm~~l~~~G~~le~~~G-~  171 (277)
                      .-+.+..|..+..++.++|++........ .........+.|.||++||+++|.+..|+++||+++|.+|..+|+.+| +
T Consensus        11 ~~~~p~~ts~~~~~~~~i~lv~~~~~i~~~~~l~~~~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~~fE~~~G~t   90 (258)
T KOG2632|consen   11 WMKIPLLTSIVVVLAILIYLVSFFPGIVEVLGLPSELLINWQLYRLITYALVHLSLPHLLFNMLALWPLGSQFERTHGTT   90 (258)
T ss_pred             cccchHHHHHHHHHHHHHHHHhccchhhhHhcCCHHHhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchhHHHhhccce
Confidence            34456788888899999998877665441 111223346789999999999999999999999999999999999999 8


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcC-----C---CceeechHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH-HHHH
Q 037250          172 FGLWLSYIFTGAAANFVSWLILP-----K---NAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEK-VMEA  242 (277)
Q Consensus       172 ~~~l~~yl~s~~~g~l~~~~~~~-----~---~~~~~GaSG~ifgl~g~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~  242 (277)
                      .+++......++..+++.++...     +   ++..+|.||+.|++++....-.+... +.....+-+.....+. .+.+
T Consensus        91 ~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~-~~~fg~~siP~~l~Pw~lLi~  169 (258)
T KOG2632|consen   91 VRILMFTVLLALFSGILYLLAYHVFLLSDLVYVEGAIGFSGVLFAMMAVLEVQSPVRS-RSVFGLFSIPIVLAPWALLIA  169 (258)
T ss_pred             ehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhcccccccHHHHHHHHHHhhcCcccc-hhhcccccccHHHHHHHHHHH
Confidence            88888888889988887766542     1   23469999999999999776443211 1122221011111111 1111


Q ss_pred             HHhhhhcccceecCCCCchhhHHHHHHHHHHHHh
Q 037250          243 AQASAGMSGTFIGGYSVQSINHIAHLSGALFGVF  276 (277)
Q Consensus       243 ~~~~~~l~~~~~~~~~~~~vs~~aHLgG~l~G~l  276 (277)
                      .            .+..|+.|+.||++|++.|+.
T Consensus       170 ~------------~~lvp~aSFlghl~GllvG~a  191 (258)
T KOG2632|consen  170 T------------QILVPQASFLGHLCGLLVGYA  191 (258)
T ss_pred             H------------HHHccCchHHHHHHHHHHHHH
Confidence            1            012389999999999999985

>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=99.47  E-value=1.4e-14  Score=137.04  Aligned_cols=128  Identities=27%  Similarity=0.484  Sum_probs=101.1

Q ss_pred             ccCCCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcCCCceeechHHHHHHH
Q 037250          130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGL  209 (277)
Q Consensus       130 ~~~~~~wrl~Ts~F~H~~~~HL~~Nm~~l~~~G~~le~~~G~~~~l~~yl~s~~~g~l~~~~~~~~~~~~~GaSG~ifgl  209 (277)
                      ..+.|.||++|+.|+|+++.|++..|.....+-+-+|+..|+.|...+|+++|+.||+++..+.|.. +.+|.||+-||+
T Consensus       446 e~PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGitGNLASAIFlpY~-~eVgPa~sQ~Gi  524 (652)
T KOG2290|consen  446 EVPDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGITGNLASAIFLPYR-AEVGPAGSQFGI  524 (652)
T ss_pred             CChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeecccccccchheeeeccc-cccCCcccccch
Confidence            3567999999999999999999999999999999999999999999999999999999999998764 589999999999


Q ss_pred             HHHHHHHhh-ch-----hhHHHHHHHHHHHHHHHHHHHHHHhhhhcccceecCCCCchhhHHHHHHHHHHHHhC
Q 037250          210 FAISVLVKM-SW-----DWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL  277 (277)
Q Consensus       210 ~g~~~~l~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vs~~aHLgG~l~G~ll  277 (277)
                      ++...+--. +|     +|+....++     +..+++.        .|      ..|.||++||+.|+++|+++
T Consensus       525 la~l~vEl~qs~~il~~~w~a~~~Li-----a~~L~L~--------iG------liPWiDN~aHlfG~i~GLl~  579 (652)
T KOG2290|consen  525 LACLFVELFQSWQILERPWRAFFHLI-----ATLLVLC--------IG------LIPWIDNWAHLFGTIFGLLT  579 (652)
T ss_pred             HHHHHHHHHhhhHhhhhHHHHHHHHH-----HHHHHHH--------hc------cccchhhHHHHHHHHHHHHH
Confidence            998776321 11     222222221     1111110        01      23889999999999999863

>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]

Probab=99.07  E-value=5.5e-11  Score=108.16  Aligned_cols=169  Identities=24%  Similarity=0.315  Sum_probs=115.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhc---cCCCcceeeecccccCChhHHHHHHHHHHHHHH-HHHHhhhhHHH
Q 037250           99 NGVFWIILLNLGLYVADHVFQVRSIKSLYLYH---NFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGK-LVEEEEGNFGL  174 (277)
Q Consensus        99 ~~t~~lI~ln~~vfl~~~~~~~~~~~~~~~~~---~~~~~wrl~Ts~F~H~~~~HL~~Nm~~l~~~G~-~le~~~G~~~~  174 (277)
                      .+.+.+++.|+.+|..|.+.+.......+...   ..--.|.+++|.|.|.+.+|+..||+.++.+.. .+...+|...+
T Consensus       116 g~v~~ll~~n~~vf~lWrv~~~~~~~~~~mls~~~~~t~~w~i~~s~Fsh~~a~h~g~~~~~~~~y~~~a~~~~~~~~~~  195 (310)
T KOG2980|consen  116 GVVFGLLIANAFVFTLWRVPQKQFTMIPWMLSRNAYKTGCWKIILSTFSHYSALHLGPNMLVLKSYLAGALKGSLGFSSF  195 (310)
T ss_pred             cchhHHHHHHHHHHHHHHhcchhhhhhhHHhhcccccccceeEEeehhcchhHhhhcHHHHHHHHHhcccccCCcchhhc
Confidence            37899999999999999998776544444332   234568899999999999999999999999988 78888999999


Q ss_pred             HHHHHHHHHHHHHHHHhhc-C--CCceeechHHHHHHHHHHHHHHhhchhhHHHHHHH--HHH-HHHHHHHHHHHHhhhh
Q 037250          175 WLSYIFTGAAANFVSWLIL-P--KNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVL--ILG-QFVVEKVMEAAQASAG  248 (277)
Q Consensus       175 l~~yl~s~~~g~l~~~~~~-~--~~~~~~GaSG~ifgl~g~~~~l~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~  248 (277)
                      .++|+.++..|..+...-. +  ...+.+||||+++++.++.+.+.|+-+.. +..+.  ..+ ...+..+..+..    
T Consensus       196 ~AlylSa~~~~~~i~~~~~v~~~~~gp~LGAsGav~ai~a~~~~lfP~~~~~-i~f~~~v~~ga~~~~~~i~~~~~----  270 (310)
T KOG2980|consen  196 FALYLSAGVKGLFISVKDKVPTSWAGPSLGASGAVYAILALDCTLFPKTTLY-ILFVFPVPAGAGLAFKAIAAYDF----  270 (310)
T ss_pred             ccceeccccccceeEeeccccccccccccccchHHHHHHHHHhhcCcCccee-EEEeecccccchhHHHHHHHhhh----
Confidence            9999966666665443321 1  22457999999999999999887642211 10000  000 011111221111    


Q ss_pred             cccceecCCCCchhhHHHHHHHHHHHHh
Q 037250          249 MSGTFIGGYSVQSINHIAHLSGALFGVF  276 (277)
Q Consensus       249 l~~~~~~~~~~~~vs~~aHLgG~l~G~l  276 (277)
                       .+.+.   .+.+-||.||++|-+.|..
T Consensus       271 -a~~~l---~~~~~n~~Ah~~gsl~Gv~  294 (310)
T KOG2980|consen  271 -AGLIL---GWGFFNHAAHLSGSLFGVV  294 (310)
T ss_pred             -cceee---ccccchhHhhhcchHHHHH
Confidence             11111   2356788899999999964

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=98.12  E-value=2.6e-06  Score=66.50  Aligned_cols=77  Identities=19%  Similarity=0.270  Sum_probs=63.2

Q ss_pred             CcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhc-------C-CC---ceeech
Q 037250          134 AWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLIL-------P-KN---AVSVGA  202 (277)
Q Consensus       134 ~~wrl~Ts~F~H~~~~HL~~Nm~~l~~~G~~le~~~G~~~~l~~yl~s~~~g~l~~~~~~-------~-~~---~~~~Ga  202 (277)
                      .+|+++|+.|++.++..++.|.+.++..|+.+|+.+|+++++.......+.++++.....       . ..   .+.-|.
T Consensus         7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl~~~~~~~~~y~i~~~~~~l~~~i~G~   86 (99)
T PF08551_consen    7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNLLTFLLYLLLYAITGNESYLFVPISGF   86 (99)
T ss_pred             ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCceeEEEecCc
Confidence            679999999999999999999999999999999999999999999999988888754431       1 11   234566


Q ss_pred             HHHHHHHH
Q 037250          203 SGAVFGLF  210 (277)
Q Consensus       203 SG~ifgl~  210 (277)
                      .|.+.|++
T Consensus        87 ~~~~~g~l   94 (99)
T PF08551_consen   87 MGVLAGFL   94 (99)
T ss_pred             HHhHhheE
Confidence            66666654

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=97.96  E-value=0.00016  Score=63.06  Aligned_cols=95  Identities=17%  Similarity=0.190  Sum_probs=65.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHhhhhhhh---hhhhhccCCCcceeeecccccCCh-hHHHHHHHHHHHHHHHHHHh-h-hh
Q 037250           98 VNGVFWIILLNLGLYVADHVFQVRSIK---SLYLYHNFPAWYQFVTAAFCHANW-NHLSSNLFFLYIFGKLVEEE-E-GN  171 (277)
Q Consensus        98 ~~~t~~lI~ln~~vfl~~~~~~~~~~~---~~~~~~~~~~~wrl~Ts~F~H~~~-~HL~~Nm~~l~~~G~~le~~-~-G~  171 (277)
                      +++|...++..+++.++..+.-.....   +.....++.|+||++|+.|.-++. .+.++|++.++..++.+|+. + ++
T Consensus         2 PpVTR~~~~~~~~~s~l~~~~~~~~~~l~~~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~~   81 (197)
T PF04511_consen    2 PPVTRYWLISTVALSLLVSFGIISPYYLYFDWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQGR   81 (197)
T ss_pred             ChhHHHHHHHHHHHHHHHHCCCCCHHHeeECcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCCC
Confidence            578888888888887776543122111   111223568999999999986655 69999999999999999998 3 33


Q ss_pred             -HHHHHHHHHHHHHHHHHHHhh
Q 037250          172 -FGLWLSYIFTGAAANFVSWLI  192 (277)
Q Consensus       172 -~~~l~~yl~s~~~g~l~~~~~  192 (277)
                       .+|+...+.++..-.+++.+.
T Consensus        82 ~ady~~~ll~~~~~i~~~~~~~  103 (197)
T PF04511_consen   82 SADYLWFLLFGASLILILSLLI  103 (197)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence             467666666655555555544

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>KOG0858 consensus Predicted membrane protein [Function unknown]

Probab=96.85  E-value=0.0031  Score=56.22  Aligned_cols=96  Identities=10%  Similarity=0.105  Sum_probs=70.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhhhhhhh---hhhhhccCCCcceeeecccccCC-hhHHHHHHHHHHHHHHHHHHhh-
Q 037250           95 KKSVNGVFWIILLNLGLYVADHVFQVRSIK---SLYLYHNFPAWYQFVTAAFCHAN-WNHLSSNLFFLYIFGKLVEEEE-  169 (277)
Q Consensus        95 ~~~~~~t~~lI~ln~~vfl~~~~~~~~~~~---~~~~~~~~~~~wrl~Ts~F~H~~-~~HL~~Nm~~l~~~G~~le~~~-  169 (277)
                      ...+++|......|++.-++..+.-..+..   ......++.|+||++|+.+.-+. -.|.++||+.++--++.+|+-. 
T Consensus        10 ~~iPpVTR~~~~~~v~tt~~~~l~lIsP~~l~~~p~Lv~kk~QiWRliTs~lyfg~~gf~fl~n~~FlyrY~~~LE~g~f   89 (239)
T KOG0858|consen   10 LQIPPVTRYYTTACVVTTLLVRLDLISPFQLYLNPELVFKKFQIWRLITSFLYFGPFGFDFLMNLYFLYRYSSMLEEGSF   89 (239)
T ss_pred             hcCChHHHHHHHHHHHHHHHHhhcccCchheEecHHHHHhHhHHHHhhhhhheeccccHHHHHHHHHHHHHHHHHhcCCC
Confidence            345788999999999887776653222211   11233477899999999888876 6899999999999999999853 


Q ss_pred             --hhHHHHHHHHHHHHHHHHHHH
Q 037250          170 --GNFGLWLSYIFTGAAANFVSW  190 (277)
Q Consensus       170 --G~~~~l~~yl~s~~~g~l~~~  190 (277)
                        .+.+|+.+.+.++++-.+.++
T Consensus        90 ~~rtadf~~mllf~~~l~~~~~~  112 (239)
T KOG0858|consen   90 RGRTADFLYMLLFGAVLLTLTGL  112 (239)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHH
Confidence              236788888887776665444

>KOG4463 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.82  E-value=0.029  Score=50.84  Aligned_cols=61  Identities=18%  Similarity=0.429  Sum_probs=52.6

Q ss_pred             ccCCCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 037250          130 HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWL  191 (277)
Q Consensus       130 ~~~~~~wrl~Ts~F~H~~~~HL~~Nm~~l~~~G~~le~~~G~~~~l~~yl~s~~~g~l~~~~  191 (277)
                      ..+.||||++-..|.-.+-..+.+-.+.+|.+ +.+||.+|+-+|..+.+.++..+-+..+.
T Consensus        46 ~~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~f-R~~ERlLGShky~~fiv~s~~~~~l~~~i  106 (323)
T KOG4463|consen   46 EKYFQYWRLLMSQFAFSNTPELMFGLYILYYF-RVFERLLGSHKYSVFIVFSGTVSLLLEVI  106 (323)
T ss_pred             HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHHhccccceeehhHHHHHHHHHHHH
Confidence            35579999999999999999988888777776 89999999999999999998888876543

>KOG2890 consensus Predicted membrane protein [Function unknown]

Probab=94.62  E-value=0.11  Score=47.98  Aligned_cols=81  Identities=17%  Similarity=0.267  Sum_probs=63.6

Q ss_pred             CCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH-------HHhhcCCC----ceeec
Q 037250          133 PAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYIFTGAAANFV-------SWLILPKN----AVSVG  201 (277)
Q Consensus       133 ~~~wrl~Ts~F~H~~~~HL~~Nm~~l~~~G~~le~~~G~~~~l~~yl~s~~~g~l~-------~~~~~~~~----~~~~G  201 (277)
                      .+.|+++|+.|+-.+.+-.+.|.+.+.+-|+.+|+.+|+..++..|.+.-...+++       .+.+....    .+..|
T Consensus        65 ~~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l~v~v~~~l~Y~it~n~v~L~~~i~G  144 (326)
T KOG2890|consen   65 FFPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTLVVLVPALLLYMITDNHVYLYIPIHG  144 (326)
T ss_pred             hhhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHHHHHHHHHHHHHHhcCceEEEEEecc
Confidence            47899999999999999999999999999999999999999999888754433332       22222221    23579


Q ss_pred             hHHHHHHHHHHH
Q 037250          202 ASGAVFGLFAIS  213 (277)
Q Consensus       202 aSG~ifgl~g~~  213 (277)
                      ..|...|++.+.
T Consensus       145 ~~gilaGilVa~  156 (326)
T KOG2890|consen  145 TTGILAGILVAW  156 (326)
T ss_pred             chHHHHHHHHHH
Confidence            999999988764

>COG5291 Predicted membrane protein [Function unknown]

Probab=93.97  E-value=0.14  Score=46.10  Aligned_cols=73  Identities=18%  Similarity=0.240  Sum_probs=49.5

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhh---hccCCCcceeeecccccCC-hhHHHHHHHHHHHHHHHHHHh
Q 037250           96 KSVNGVFWIILLNLGLYVADHVFQVRSIKSLYL---YHNFPAWYQFVTAAFCHAN-WNHLSSNLFFLYIFGKLVEEE  168 (277)
Q Consensus        96 ~~~~~t~~lI~ln~~vfl~~~~~~~~~~~~~~~---~~~~~~~wrl~Ts~F~H~~-~~HL~~Nm~~l~~~G~~le~~  168 (277)
                      +.+|+|..+.++..++-++....-..++...|.   ....-|+||++|+-.+-++ -...++|.+.++--.+.+|+-
T Consensus        18 ~IPPITRy~~ll~~a~til~~~~lvsPwy~ly~~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~g   94 (313)
T COG5291          18 RIPPITRYMTLLISAVTILVYVDLVSPWYSLYYSPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEEG   94 (313)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHhhcCccceeeechhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhcc
Confidence            356777666666666655544432222222332   2466799999998666654 568999999999999999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	277
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	1e-23
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	5e-22
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Length = 181

 Score = 93.9 bits (234), Expect = 1e-23
 Identities = 27/179 (15%), Positives = 68/179 (37%), Gaps = 19/179 (10%)

Query: 104 IILLNLGLYVADHVFQVRSIKSLYLYHNFPA----WYQFVTAAFCHANWNHLSSNLFFLY 159
           +++  + +++A  +   + +     +   P     ++++ T A  H +  H+  NL + +
Sbjct: 10  MMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWW 69

Query: 160 IFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLF-AISVLVKM 218
             G  VE+  G+  L +  + +   + +V            G SG V+ L   + +  + 
Sbjct: 70  YLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSG--PWFGGLSGVVYALMGYVWLRGER 127

Query: 219 SWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
                  L+  ++   ++  V        G    F        + + AH++G   G+ +
Sbjct: 128 DPQSGIYLQRGLIIFALIWIVA-------GWFDLFGMS-----MANGAHIAGLAVGLAM 174

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Length = 196

 Score = 89.7 bits (223), Expect = 5e-22
 Identities = 32/178 (17%), Positives = 68/178 (38%), Gaps = 17/178 (9%)

Query: 104 IILLNLGLYVADHVFQVRSIKSLYLYHNFPA----WYQFVTAAFCHANWNHLSSNLFFLY 159
           +  L + +Y+A  +     I  L  Y  +       +++++    H +  H+  NL + +
Sbjct: 15  LTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFF 74

Query: 160 IFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMS 219
           IFG ++E   G+  L + Y+   A   +V   +        G SG V+ +    V ++  
Sbjct: 75  IFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSG--PAFFGLSGVVYAVLG-YVFIRDK 131

Query: 220 WDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVFL 277
            +             ++           G++  FI       + + AH+SG + G+  
Sbjct: 132 LNHHLFDLPEGFFTMLL----------VGIALGFISPLFGVEMGNAAHISGLIVGLIW 179

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.9 bits (113), Expect = 2e-06
 Identities = 36/275 (13%), Positives = 70/275 (25%), Gaps = 115/275 (41%)

Query: 48  PKLNLPIKLRPLRHPSLTLRSRL----------VCNMSG---SDMISQLELDKPEERRKP 94
            K N+    R    P L LR  L          +  + G   + +   + L    + +  
Sbjct: 127 AKYNVS---RL--QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181

Query: 95  KKSVNGVFWI-------------ILLNLGLYVADHVFQVRS----------------IKS 125
                 +FW+             +L  L LY  D  +  RS                ++ 
Sbjct: 182 ----FKIFWLNLKNCNSPETVLEMLQKL-LYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 126 LYLYHNFPA--------WYQFVTAAF---C----------------HANWNHLSSNLFFL 158
           L     +                 AF   C                 A   H+S +    
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD-HHS 295

Query: 159 YIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKM 218
                  +E +     +L                LP+  ++            +S++ + 
Sbjct: 296 MTLTP--DEVKSLLLKYLDCRPQD----------LPREVLTT-------NPRRLSIIAES 336

Query: 219 ------SWD-WRKILEVLILGQFVVEKVMEAAQAS 246
                 +WD W+ +           +K+    ++S
Sbjct: 337 IRDGLATWDNWKHVN---------CDKLTTIIESS 362

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	277
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.95
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	99.95

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.95  E-value=1.8e-27  Score=203.49  Aligned_cols=167  Identities=16%  Similarity=0.138  Sum_probs=122.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhh----hccCCCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhhh
Q 037250           96 KSVNGVFWIILLNLGLYVADHVFQVRSIKSLYL----YHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGN  171 (277)
Q Consensus        96 ~~~~~t~~lI~ln~~vfl~~~~~~~~~~~~~~~----~~~~~~~wrl~Ts~F~H~~~~HL~~Nm~~l~~~G~~le~~~G~  171 (277)
                      |..|+|..++++|+++|+++...+.........    ....+||||++|++|+|.|+.|+++||+.++.+|+.+|+.+|+
T Consensus         2 ~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~   81 (181)
T 2xov_A            2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGS   81 (181)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhhccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhCh
Confidence            456899999999999999988764432112111    1256899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCceeechHHHHHHHHHHHHHHhhchhhHHHH-HHHHHHHHHHHHHHHHHHhhhhcc
Q 037250          172 FGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKIL-EVLILGQFVVEKVMEAAQASAGMS  250 (277)
Q Consensus       172 ~~~l~~yl~s~~~g~l~~~~~~~~~~~~~GaSG~ifgl~g~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~  250 (277)
                      ++++.+|+.+++.+++++++..++.  ++||||++||++++.++.....+..+.. .........+.+.++.       .
T Consensus        82 ~~fl~~yl~~~i~~~l~~~~~~~~~--~vGaSGai~gl~g~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~-------~  152 (181)
T 2xov_A           82 GKLIVITLISALLSGYVQQKFSGPW--FGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGW-------F  152 (181)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSC--CCCSHHHHHHHHHHHHHHHHHCGGGSCCCCHHHHHHHHHHHHHHH-------T
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCC--ceeHHHHHHHHHHHHHHHHhhCcCceeeeHHHHHHHHHHHHHHHH-------H
Confidence            9999999999999999998887643  8999999999999876533222222110 0000001111111111       0


Q ss_pred             cceecCCCCchhhHHHHHHHHHHHHh
Q 037250          251 GTFIGGYSVQSINHIAHLSGALFGVF  276 (277)
Q Consensus       251 ~~~~~~~~~~~vs~~aHLgG~l~G~l  276 (277)
                      +.     ..+++|++||++|+++|++
T Consensus       153 ~~-----~~~~v~~~aHlgG~l~G~l  173 (181)
T 2xov_A          153 DL-----FGMSMANGAHIAGLAVGLA  173 (181)
T ss_dssp             TS-----SCCSSCHHHHHHHHHHHHH
T ss_pred             Hh-----ccccchHHHHHHHHHHHHH
Confidence            11     1368999999999999986

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=99.95  E-value=7.3e-28  Score=208.40  Aligned_cols=167  Identities=17%  Similarity=0.281  Sum_probs=121.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh----ccCCCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhh
Q 037250           95 KKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYLY----HNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEG  170 (277)
Q Consensus        95 ~~~~~~t~~lI~ln~~vfl~~~~~~~~~~~~~~~~----~~~~~~wrl~Ts~F~H~~~~HL~~Nm~~l~~~G~~le~~~G  170 (277)
                      .+..++|..++++|+++|+++...+..........    ...+||||++|++|+|.|+.|+++||+.++.+|+.+|+.+|
T Consensus         6 ~~~~pvt~~li~~~v~vfll~~~~~~~~~~~~~~~~p~~~~~~~~wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G   85 (196)
T 2nr9_A            6 AQQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFG   85 (196)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccccHHHHHHHHHHHHHHHHHHcCcHHHHHhhcCCHhhcccCCcHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHC
Confidence            35578999999999999999887643222221111    25689999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCCCceeechHHHHHHHHHHHHHHhhchhhHH-HH-HHHHHHHHHHHHHHHHHHhhhh
Q 037250          171 NFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRK-IL-EVLILGQFVVEKVMEAAQASAG  248 (277)
Q Consensus       171 ~~~~l~~yl~s~~~g~l~~~~~~~~~~~~~GaSG~ifgl~g~~~~l~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~  248 (277)
                      +++++.+|+.+++.++++++++.++.  ++||||++||++|+.++.....+... +. ....  ...+.+.++..     
T Consensus        86 ~~~~l~~yl~~~~~~~l~~~~~~~~~--~vGaSGai~gl~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-----  156 (196)
T 2nr9_A           86 SVKLLMLYVVASAITGYVQNYVSGPA--FFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFT--MLLVGIALGFI-----  156 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCSC--CCCSHHHHHHHHHHHHHHHHSSTTSCCCCCSSTT--TTTTTTTHHHH-----
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCC--eeeHHHHHHHHHHHHHHHHHhcchhhcchHHHHH--HHHHHHHHHHH-----
Confidence            99999999999999999998887653  89999999999998765332212110 00 0000  00011111110     


Q ss_pred             cccceecCCCCchhhHHHHHHHHHHHHh
Q 037250          249 MSGTFIGGYSVQSINHIAHLSGALFGVF  276 (277)
Q Consensus       249 l~~~~~~~~~~~~vs~~aHLgG~l~G~l  276 (277)
                        +.    ...+++|+.||+||+++|++
T Consensus       157 --~~----~~~~~v~~~aHlgG~l~G~l  178 (196)
T 2nr9_A          157 --SP----LFGVEMGNAAHISGLIVGLI  178 (196)
T ss_dssp             --SC----SSCCTTCHHHHHHHHHHHHH
T ss_pred             --Hh----ccCCCccHHHHHHHHHHHHH
Confidence              00    02358999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	277
d3b45a1	180	f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId:	5e-13
d2nr9a1	189	f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilu	6e-12

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Length = 180

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

 Score = 64.0 bits (155), Expect = 5e-13
 Identities = 28/181 (15%), Positives = 63/181 (34%), Gaps = 17/181 (9%)

Query: 101 VFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPA----WYQFVTAAFCHANWNHLSSNLF 156
            + +++  + +++A  +   + +     +   P     ++++ T A  H +  H+  NL 
Sbjct: 7   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 66

Query: 157 FLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLV 216
           + +  G  VE+  G+  L +  + +   + +V            G SG V+ L     L 
Sbjct: 67  WWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKF--SGPWFGGLSGVVYALMGYVWLR 124

Query: 217 KMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVF 276
                   I     L  F +                        S+ + AH++G   G+ 
Sbjct: 125 GERDPQSGIYLQRGLIIFAL-----------IWIVAGWFDLFGMSMANGAHIAGLAVGLA 173

Query: 277 L 277
           +
Sbjct: 174 M 174

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Length = 189

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

 Score = 60.9 bits (147), Expect = 6e-12
 Identities = 32/181 (17%), Positives = 64/181 (35%), Gaps = 17/181 (9%)

Query: 101 VFWIILLNLGLYVADHVFQVRSIKSLYLYHNFPA----WYQFVTAAFCHANWNHLSSNLF 156
              +  L + +Y+A  +     I  L  Y  +       +++++    H +  H+  NL 
Sbjct: 9   TLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLS 68

Query: 157 FLYIFGKLVEEEEGNFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLV 216
           + +IFG ++E   G+  L + Y+   A   +V   +        G SG V+ +     + 
Sbjct: 69  WFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPA--FFGLSGVVYAVLGYVFIR 126

Query: 217 KMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSGTFIGGYSVQSINHIAHLSGALFGVF 276
                    L        +V   +            FI       + + AH+SG + G+ 
Sbjct: 127 DKLNHHLFDLPEGFFTMLLVGIAL-----------GFISPLFGVEMGNAAHISGLIVGLI 175

Query: 277 L 277
            
Sbjct: 176 W 176

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	277
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	99.95
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	99.93

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=1.4e-27  Score=201.25  Aligned_cols=168  Identities=15%  Similarity=0.134  Sum_probs=126.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhh----hccCCCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhh
Q 037250           95 KKSVNGVFWIILLNLGLYVADHVFQVRSIKSLYL----YHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEG  170 (277)
Q Consensus        95 ~~~~~~t~~lI~ln~~vfl~~~~~~~~~~~~~~~----~~~~~~~wrl~Ts~F~H~~~~HL~~Nm~~l~~~G~~le~~~G  170 (277)
                      +|..|+|..++++|+++|+++.............    ...++||||++|++|+|.|+.|+++||+.++.+|+.+|+.+|
T Consensus         1 ~r~~pvT~~li~i~~~vf~~~~~~~~~~~~~~~~~~~~~~~~g~~wrl~T~~f~H~~~~Hl~~N~~~l~~~G~~lE~~~G   80 (180)
T d3b45a1           1 ERAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLG   80 (180)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCGGGGTGGGGCCCSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHhCcHHHHHHHcCCCcccccCchHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3678999999999999999887765444333222    235789999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHhhcCCCceeechHHHHHHHHHHHHHHhhchhhHHHHH-HHHHHHHHHHHHHHHHHhhhhc
Q 037250          171 NFGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILE-VLILGQFVVEKVMEAAQASAGM  249 (277)
Q Consensus       171 ~~~~l~~yl~s~~~g~l~~~~~~~~~~~~~GaSG~ifgl~g~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l  249 (277)
                      +++++.+|+.+++.|+++..+..++  ...|+||+++|++++.....++.+...... ........+.....        
T Consensus        81 ~~~~~~~~~~~~~~g~l~~~~~~~~--~~~G~sg~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  150 (180)
T d3b45a1          81 SGKLIVITLISALLSGYVQQKFSGP--WFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAG--------  150 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCS--CCCCSHHHHHHHHHHHHHHHHHCGGGSCCCCHHHHHHHHHHHHHH--------
T ss_pred             chhheeeeeHHHHHHHHHHHHHhcc--ccccccchHHHHHHHHHHHhhhcchhHHhhHHHHHHHHHHHHHHH--------
Confidence            9999999999999999999888764  578999999999999887654333221100 00000011111110        


Q ss_pred             ccceecCCCCchhhHHHHHHHHHHHHh
Q 037250          250 SGTFIGGYSVQSINHIAHLSGALFGVF  276 (277)
Q Consensus       250 ~~~~~~~~~~~~vs~~aHLgG~l~G~l  276 (277)
                          ......+++|+.||++|+++|++
T Consensus       151 ----~~~~~~~~v~~~aHlgG~l~G~~  173 (180)
T d3b45a1         151 ----WFDLFGMSMANGAHIAGLAVGLA  173 (180)
T ss_dssp             ----HTTSSCCSSCHHHHHHHHHHHHH
T ss_pred             ----HHHhccCchHHHHHHHHHHHHHH
Confidence                01123478999999999999986

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.93  E-value=3.9e-27  Score=200.21  Aligned_cols=168  Identities=18%  Similarity=0.258  Sum_probs=123.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHHHhhhhhhhhhh----hhccCCCcceeeecccccCChhHHHHHHHHHHHHHHHHHHhhhh
Q 037250           96 KSVNGVFWIILLNLGLYVADHVFQVRSIKSLY----LYHNFPAWYQFVTAAFCHANWNHLSSNLFFLYIFGKLVEEEEGN  171 (277)
Q Consensus        96 ~~~~~t~~lI~ln~~vfl~~~~~~~~~~~~~~----~~~~~~~~wrl~Ts~F~H~~~~HL~~Nm~~l~~~G~~le~~~G~  171 (277)
                      +..|+|..++++|+++|+++............    ....++||||++|++|+|.|+.|+++||+.++.+|..+|+.+|+
T Consensus         4 ~~~pvt~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~wrl~T~~f~H~~~~Hl~~N~~~l~~~g~~~E~~~G~   83 (189)
T d2nr9a1           4 QQGKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGS   83 (189)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHSCCCSGGGGGCTTHHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             CcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHccccccccCchHHhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45689999999999999998775444333322    23467899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhcCCCceeechHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 037250          172 FGLWLSYIFTGAAANFVSWLILPKNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVVEKVMEAAQASAGMSG  251 (277)
Q Consensus       172 ~~~l~~yl~s~~~g~l~~~~~~~~~~~~~GaSG~ifgl~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  251 (277)
                      ++++.+|+.++++++++..+..+.  ..+|+||+++|++++.....+..+..............+...+..         
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~~~~~--~~vGaSG~v~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  152 (189)
T d2nr9a1          84 VKLLMLYVVASAITGYVQNYVSGP--AFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGF---------  152 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCS--CCCCSHHHHHHHHHHHHHHHHSSTTSCCCCCSSTTTTTTTTTHHH---------
T ss_pred             HhhhhHHHHHHHHHHHHHHhcCCC--CcccchHHHHHHHHHHHHHHHHhhhHhccHHHHHHHHHHHHHHHH---------
Confidence            999999999999999998877653  579999999999998776443211110000000000011111111         


Q ss_pred             ceecCCCCchhhHHHHHHHHHHHHh
Q 037250          252 TFIGGYSVQSINHIAHLSGALFGVF  276 (277)
Q Consensus       252 ~~~~~~~~~~vs~~aHLgG~l~G~l  276 (277)
                        ......+++|++||++|+++|++
T Consensus       153 --~~~~~~~~v~~~aHl~G~l~G~~  175 (189)
T d2nr9a1         153 --ISPLFGVEMGNAAHISGLIVGLI  175 (189)
T ss_dssp             --HSCSSCCTTCHHHHHHHHHHHHH
T ss_pred             --HHhccCCChHHHHHHHHHHHHHH
Confidence              11223478999999999999986