Citrus Sinensis ID: 037390

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------
Protein Sequence
MSVGSDLLGKFSYLQDIVFAKMLLMKTRDLLSDATVLPVNGIRTISWWLTRLLLMHQRILDERSSSLYDLLKVLCMIY
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
msvgsdllgkfsyLQDIVFAKMLLMKTRDLlsdatvlpvngIRTISWWLTRLLLMHQRILDERSSSLYDLLKVLCMIY
Flexible Loop (DISEMBL)
msvgsdllgkfsYLQDIVFAKMLLMKTRDLLSDATVLPVNGIRTISWWLTRLLLMHQRILderssslyDLLKVLCMIY
Low Complexity Region (SEG)
MSVGSDLLGKFSYLQDIVFAKMLLMKTRDLLSDATVLPVNGIRTISWWLTRLLLMHQRILDERSSSLYDLLKVLCMIY
Disordered region (IsUnstruct)
******LLGKFSYLQDIVFAKMLLMKTRDLLSDATVLPVNGIRTISWWLTRLLLMHQRILDERSSSLYDLLKVLCMI*
Disordered Region (DISOPRED)
******L*GKFSYLQDIVFAKMLLMKTRDLLSDATVLPVNGIRTISWWLTRLLLMHQRILDERSSSLYDLLKVLCMIY
Disordered Region (DISEMBL)
MSVGSDLLGKFSYLQDIVFAKMLLMKTRDLLSDATVLPVNGIRTISWWLTRLLLMHQRILDERSSSLYDLLKVLCMIY
Disordered Region (DISPRO)
****SDLLGKFSYLQDIVFAKMLLMKTRDLLSDATVLPVNGIRTISWWLTRLLLMHQRILDERSSSLYDLLKVLCMIY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSVGSDLLGKFSYLQDIVFAKMLLMKTRDLLSDATVLPVNGIRTISWWLTRLLLMHQRILDERSSSLYDLLKVLCMIY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
296084812	904	unnamed protein product [Vitis vinifera]	0.948	0.081	0.635	2e-19
359480921	909	PREDICTED: tetratricopeptide repeat prot	0.948	0.081	0.635	2e-19
147798562	438	hypothetical protein VITISV_001363 [Viti	0.948	0.168	0.635	4e-19
255571269	891	conserved hypothetical protein [Ricinus	0.935	0.081	0.643	7e-17
449484137	416	PREDICTED: tetratricopeptide repeat prot	0.948	0.177	0.581	7e-16
449468426	897	PREDICTED: tetratricopeptide repeat prot	0.948	0.082	0.581	8e-16
356507408	910	PREDICTED: tetratricopeptide repeat prot	0.846	0.072	0.621	9e-15
357464833	660	Tetratricopeptide repeat protein, partia	0.858	0.101	0.602	3e-14
15237943	899	tetratricopeptide repeat-containing prot	0.935	0.081	0.616	9e-14
297807747	892	tetratricopeptide repeat-containing prot	0.935	0.081	0.616	1e-13

>gi|296084812|emb|CBI27694.3| unnamed protein product [Vitis vinifera]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/74 (63%), Positives = 59/74 (79%)

Query: 1   MSVGSDLLGKFSYLQDIVFAKMLLMKTRDLLSDATVLPVNGIRTISWWLTRLLLMHQRIL 60
           MS GSDL GK   LQ IVFAKMLLM+T+DLL + +   +NG+R+ISWWL R++L  QR+L
Sbjct: 165 MSSGSDLFGKTYNLQYIVFAKMLLMRTKDLLFEGSFTSINGVRSISWWLARVILFQQRVL 224

Query: 61  DERSSSLYDLLKVL 74
           DERSSSL+DLL+V 
Sbjct: 225 DERSSSLFDLLQVF 238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480921|ref|XP_002268108.2| PREDICTED: tetratricopeptide repeat protein 27 homolog [Vitis vinifera]

 Score = 99.8 bits (247), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/74 (63%), Positives = 59/74 (79%)

Query: 1   MSVGSDLLGKFSYLQDIVFAKMLLMKTRDLLSDATVLPVNGIRTISWWLTRLLLMHQRIL 60
           MS GSDL GK   LQ IVFAKMLLM+T+DLL + +   +NG+R+ISWWL R++L  QR+L
Sbjct: 165 MSSGSDLFGKTYNLQYIVFAKMLLMRTKDLLFEGSFTSINGVRSISWWLARVILFQQRVL 224

Query: 61  DERSSSLYDLLKVL 74
           DERSSSL+DLL+V 
Sbjct: 225 DERSSSLFDLLQVF 238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798562|emb|CAN76690.1| hypothetical protein VITISV_001363 [Vitis vinifera]

 Score = 99.0 bits (245), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 47/74 (63%), Positives = 58/74 (78%)

Query: 1   MSVGSDLLGKFSYLQDIVFAKMLLMKTRDLLSDATVLPVNGIRTISWWLTRLLLMHQRIL 60
           MS GSDL GK   LQ IVFAKMLLM+T+DLL + +    NG+R+ISWWL R++L  QR+L
Sbjct: 165 MSSGSDLFGKTYNLQYIVFAKMLLMRTKDLLFEGSFTSXNGVRSISWWLARVILFQQRVL 224

Query: 61  DERSSSLYDLLKVL 74
           DERSSSL+DLL+V 
Sbjct: 225 DERSSSLFDLLQVF 238

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571269|ref|XP_002526584.1| conserved hypothetical protein [Ricinus communis] gi|223534078|gb|EEF35796.1| conserved hypothetical protein [Ricinus communis]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 47/73 (64%), Positives = 58/73 (79%)

Query: 1   MSVGSDLLGKFSYLQDIVFAKMLLMKTRDLLSDATVLPVNGIRTISWWLTRLLLMHQRIL 60
           MS G  LLGKFS LQ IVF+K+L+MK +DLL   ++  + GIRTISWWL R+LL+ QRIL
Sbjct: 165 MSSGCHLLGKFSNLQFIVFSKLLVMKIKDLLFGGSLASIYGIRTISWWLVRILLVQQRIL 224

Query: 61  DERSSSLYDLLKV 73
           DE SSSL+DLL+V
Sbjct: 225 DELSSSLFDLLQV 237

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484137|ref|XP_004156795.1| PREDICTED: tetratricopeptide repeat protein 27-like [Cucumis sativus]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 43/74 (58%), Positives = 54/74 (72%)

Query: 1   MSVGSDLLGKFSYLQDIVFAKMLLMKTRDLLSDATVLPVNGIRTISWWLTRLLLMHQRIL 60
           M  GSDL GKF+ +Q IVFAKMLL + +D+L         G+++ISWWL R+LL  QRIL
Sbjct: 169 MFTGSDLFGKFTNIQYIVFAKMLLTRIKDMLFKENTSSKYGMKSISWWLARVLLCQQRIL 228

Query: 61  DERSSSLYDLLKVL 74
           DERSSSL+D L+VL
Sbjct: 229 DERSSSLFDHLQVL 242

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468426|ref|XP_004151922.1| PREDICTED: tetratricopeptide repeat protein 27 homolog [Cucumis sativus]

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 43/74 (58%), Positives = 54/74 (72%)

Query: 1   MSVGSDLLGKFSYLQDIVFAKMLLMKTRDLLSDATVLPVNGIRTISWWLTRLLLMHQRIL 60
           M  GSDL GKF+ +Q IVFAKMLL + +D+L         G+++ISWWL R+LL  QRIL
Sbjct: 169 MFTGSDLFGKFTNIQYIVFAKMLLTRIKDMLFKENTSSKYGMKSISWWLARVLLCQQRIL 228

Query: 61  DERSSSLYDLLKVL 74
           DERSSSL+D L+VL
Sbjct: 229 DERSSSLFDHLQVL 242

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507408|ref|XP_003522459.1| PREDICTED: tetratricopeptide repeat protein 27 homolog [Glycine max]

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/74 (62%), Positives = 54/74 (72%), Gaps = 8/74 (10%)

Query: 1   MSVGSDLLGKFSYLQDIVFAKMLLMKTRDLLSDATVLPVNGIRTISWWLTRLLLMHQRIL 60
           MS GSDLLGKFS LQ IVFAKMLLM+ +DL  +        I ++SWWL R+LL+ QR+L
Sbjct: 159 MSAGSDLLGKFSNLQYIVFAKMLLMRMKDLSVE--------IGSLSWWLARVLLLQQRVL 210

Query: 61  DERSSSLYDLLKVL 74
           DERSSSL DLL V 
Sbjct: 211 DERSSSLSDLLHVF 224

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464833|ref|XP_003602698.1| Tetratricopeptide repeat protein, partial [Medicago truncatula] gi|355491746|gb|AES72949.1| Tetratricopeptide repeat protein, partial [Medicago truncatula]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/73 (60%), Positives = 55/73 (75%), Gaps = 6/73 (8%)

Query: 1   MSVGSDLLGKFSYLQDIVFAKMLLMKTRDLLSDATVLPVNGIRTISWWLTRLLLMHQRIL 60
           M+ GSDLLGKFS LQ IVF+KMLLM+ +DL  D        IR+++WWL R+LL+ QRIL
Sbjct: 160 MADGSDLLGKFSNLQYIVFSKMLLMRMKDLSVDIR------IRSLTWWLGRVLLLEQRIL 213

Query: 61  DERSSSLYDLLKV 73
           DERSS+L+DLL  
Sbjct: 214 DERSSTLFDLLHA 226

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237943|ref|NP_197229.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana] gi|10177072|dbj|BAB10514.1| unnamed protein product [Arabidopsis thaliana] gi|332005024|gb|AED92407.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 45/73 (61%), Positives = 59/73 (80%)

Query: 1   MSVGSDLLGKFSYLQDIVFAKMLLMKTRDLLSDATVLPVNGIRTISWWLTRLLLMHQRIL 60
           MSVGSDLLGKFS LQ +VFA++LL K +DLL + T      +R+ISWWL R+LL+HQR+L
Sbjct: 170 MSVGSDLLGKFSNLQHLVFARLLLFKLKDLLFEITSTETFEVRSISWWLVRVLLIHQRVL 229

Query: 61  DERSSSLYDLLKV 73
            ERSSSL+++L+V
Sbjct: 230 QERSSSLFEMLQV 242

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807747|ref|XP_002871757.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297317594|gb|EFH48016.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 45/73 (61%), Positives = 59/73 (80%)

Query: 1   MSVGSDLLGKFSYLQDIVFAKMLLMKTRDLLSDATVLPVNGIRTISWWLTRLLLMHQRIL 60
           MSVGSDLLGKF  LQ +VFA+MLL+K +DLL + T      +R+ISWWL R+LL+HQR+L
Sbjct: 164 MSVGSDLLGKFFNLQHLVFARMLLLKLKDLLFETTATETFELRSISWWLVRVLLIHQRVL 223

Query: 61  DERSSSLYDLLKV 73
            ERSSSL+++L+V
Sbjct: 224 HERSSSLFEMLQV 236

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
TAIR|locus:2167165	899	AT5G17270 [Arabidopsis thalian	0.935	0.081	0.616	3.4e-18
TAIR|locus:2166153	877	AT5G37130 [Arabidopsis thalian	0.935	0.083	0.575	8e-17

TAIR|locus:2167165 AT5G17270 [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 3.4e-18, P = 3.4e-18
 Identities = 45/73 (61%), Positives = 59/73 (80%)

Query:     1 MSVGSDLLGKFSYLQDIVFAKMLLMKTRDLLSDATVLPVNGIRTISWWLTRLLLMHQRIL 60
             MSVGSDLLGKFS LQ +VFA++LL K +DLL + T      +R+ISWWL R+LL+HQR+L
Sbjct:   170 MSVGSDLLGKFSNLQHLVFARLLLFKLKDLLFEITSTETFEVRSISWWLVRVLLIHQRVL 229

Query:    61 DERSSSLYDLLKV 73
              ERSSSL+++L+V
Sbjct:   230 QERSSSLFEMLQV 242

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006406 "mRNA export from nucleus" evidence=RCA

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010074 "maintenance of meristem identity" evidence=RCA

GO:0010388 "cullin deneddylation" evidence=RCA

GO:0016567 "protein ubiquitination" evidence=RCA

GO:0016571 "histone methylation" evidence=RCA

GO:0016579 "protein deubiquitination" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2166153 AT5G37130 [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 8.0e-17, P = 8.0e-17
 Identities = 42/73 (57%), Positives = 58/73 (79%)

Query:     1 MSVGSDLLGKFSYLQDIVFAKMLLMKTRDLLSDATVLPVNGIRTISWWLTRLLLMHQRIL 60
             MS GSDLLGKFS LQ +VFA++LL+K +DLL + +      +R+ISWWL R+LL+HQR+L
Sbjct:   162 MSAGSDLLGKFSNLQHLVFARLLLLKLKDLLFETSASETFQLRSISWWLVRVLLIHQRVL 221

Query:    61 DERSSSLYDLLKV 73
              E SSSL+++L+V
Sbjct:   222 HEPSSSLFEMLQV 234


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.141   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       78        78   0.00091  102 3  11 22  0.44    28
                                                     29  0.38    30


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  483 (51 KB)
  Total size of DFA:  89 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.32u 0.17s 8.49t   Elapsed:  00:00:01
  Total cpu time:  8.32u 0.17s 8.49t   Elapsed:  00:00:01
  Start:  Sat May 11 12:00:43 2013   End:  Sat May 11 12:00:44 2013

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0048046 "apoplast" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00003656001 SubName- Full=Chromosome undetermined scaffold_147, whole genome shotgun sequence; (871 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	78
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.63

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.63  E-value=2.7e-16  Score=133.31  Aligned_cols=76  Identities=53%  Similarity=0.836  Sum_probs=73.7

Q ss_pred             CCCccchhhhhhhHHHHHHHHHHHHHhhccccccccCcccccchHHHHHHHHHHHHHHHHhhhChhHHHHHHHHhh
Q 037390            1 MSVGSDLLGKFSYLQDIVFAKMLLMKTRDLLSDATVLPVNGIRTISWWLTRLLLMHQRILDERSSSLYDLLKVLCM   76 (78)
Q Consensus         1 ms~G~~l~gk~s~p~~Lv~Ar~lL~~~k~l~~~~~~~~~~~~qs~~WW~lR~~~~hQqiLeErSpsLfdl~q~~~~   76 (78)
                      |++||++.|+|.+.+++++||.+|.+++|+.++.+++....+++++||++|++++||.+|+||||+||..+|+|+.
T Consensus       107 ~~~~s~l~~~~~s~~~l~~a~~ll~~L~d~~~~~~~~~~~~l~~~~wW~~r~l~~hq~vl~E~s~~l~~~l~v~~~  182 (777)
T KOG1128|consen  107 MSSGSDLLGKFKSLQLLLFARLLLEKLKDLLPEITITETFILRVLSWWLLRLLLIHQHVLQERSPSLFMKLQVYFA  182 (777)
T ss_pred             HhHHHHhcccccchHHHHHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHHHhHHHHHhcccchHHHHHHHHHHH
Confidence            6789999999999999999999999999999999999999999999999999999999999999999999999985

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00