Citrus Sinensis ID: 037445

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------35
MEPPGMKLIMVRGPRSGETIEFKPGSKIRIGRIVRGNDVTIKDDGISSKHLIIESVSGKWTIQDLDSCNGTFLNSTTLPPNTPFDLRENDTIKLGDCTTISVQMITMDSQDESVAKPKRNPRRQANVPGTSSVRATSGRKKAEAEPVETLGLEGGQIEDQSRINKKGRGRNKNLQEMPPQSVEVQVESKENLELEEGGEIESESKITKKGRGRSKDLQEMPLDGGKVKIESEENLEPLEVLGVQVDGKENFRPGKETSKKCQVQVDGKEKTNVTLIAGARVTRSRMNALNLGFDCGETAATESKITRKGRGRKKKLQEMPPQSSSEVETEGKERLVPEEVSKTCEVQAD
cccccEEEEEEEcccccEEEEcccccEEEEccccccccEEEcccccccccEEEEEEccEEEEEEccccccEEEccEEccccccEEcccccEEEEcccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccHHHHccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHccEEEEccc
cccccEEEEEEEccccccEEEcccccEEEEEEccccccEEEccccccccEEEEEEcccEEEEEEccccccEEEcccEccccccEEcccccEEEEccEEEEEEEEEEcccccccccccccccHHHccccccccccccccccccccccHHHccccccccccHHHcccccccccccHHccccHHcccccccccccHHHcccccccEEEEEcccccccccccccccccccEEEEEcccccccEEEEEEEccccccccccccccccEEEEcccccccEEEEcccEEcccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHEEccEEccc
meppgmklimvrgprsgetiefkpgskirigrivrgndvtikddgissKHLIIEsvsgkwtiqdldscngtflnsttlppntpfdlrendtiklgdcTTISVQMITmdsqdesvakpkrnprrqanvpgtssvratsgrkkaeaepvetlgleggqiedqsrinkkgrgrnknlqemppqsvEVQVESKenleleeggeieseskitkkgrgrskdlqempldggkvkieseenleplevlgvqvdgkenfrpgketskkcqvqvdgkektnVTLIAGARVTRSRMNALNlgfdcgetaateskitrkgrgrkkklqemppqsssevetegkerlvpeevsktcevqad
meppgmklimvrgprsgetiefkpgskirigrivrgndvtikddgisskHLIIESVSGKWTIQDLDSCNGTFLNSTTLPPNTPFDLRENDTIKLGDCTTISVQMITMdsqdesvakpkrnprrqanvpgtssvratsgrkkaeaepvetlgleggqiedqsrinkkgrgrnknlqemppqsvevqveskenleleeggeieseskitkkgrgrskdlqempldggkvkieseenleplevlgvqvdgkenfrpgketskkcqvqvdgkektnvtliagarvtrsrMNALnlgfdcgetaateskitrkgrgrkkklqemppqsssevetegkerlvpeevsktcevqad
MEPPGMKLIMVRGPRSGETIEFKPGSKIRIGRIVRGNDVTIKDDGISSKHLIIESVSGKWTIQDLDSCNGTFLNSTTLPPNTPFDLRENDTIKLGDCTTISVQMITMDSQDESVAKPKRNPRRQANVPGTSSVRATSGRKKAEAEPVETLGLEGGQIEDQSRINKKGRGRNKNLQEMPPQSVEVQVeskenleleeggeieseskiTKKGRGRSKDLQEMPLDGGKVKIESEENLEPLEVLGVQVDGKENFRPGKETSKKCQVQVDGKEKTNVTLIAGARVTRSRMNALNLGFDCGETAATESKITrkgrgrkkkLQEMPPQSSSEVETEGKERLVPEEVSKTCEVQAD
************************GSKIRIGRIVRGNDVTIKDDGISSKHLIIESVSGKWTIQDLDSCNGTFLNSTTLPPNTPFDLRENDTIKLGDCTTISVQMI*********************************************************************************************************************************************************************TNVTLIAGARVTRSRMNALNLGFDCG*****************************************************
**PPGMKLIMVRGPRSGETIEFKPGSKIRIGRIVRGNDVTIKDDGISSKHLIIESVSGKWTIQDLDSCNGTFLNSTTLPPNTPFDLRENDTIKLGDCTTISVQM******************************************************************************************************************************************************************************************************************************************EV**TC*****
MEPPGMKLIMVRGPRSGETIEFKPGSKIRIGRIVRGNDVTIKDDGISSKHLIIESVSGKWTIQDLDSCNGTFLNSTTLPPNTPFDLRENDTIKLGDCTTISVQMITMD***************************************ETLGLEGGQIEDQSRINKKGRGRNKN******************************************DLQEMPLDGGKVKIESEENLEPLEVLGVQVDGKENFRP*************GKEKTNVTLIAGARVTRSRMNALNLGFDCGETAATE***********************************************
*EPPGMKLIMVRGPRSGETIEFKPGSKIRIGRIVRGNDVTIKDDGISSKHLIIESVSGKWTIQDLDSCNGTFLNSTTLPPNTPFDLRENDTIKLGDCTTISVQMITMDS******************************************************************************************IESESKITK**********E****GGKVKIESEENLEPLEVLGVQVDGKENFRPGKETSKKCQVQVDGKEKTNVTLIAGARVTRSRMNALNLGFDCGETAATESKITRKG************************RLVPEEVSKTCE****
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MEPPGMKLIMVRGPRSGETIEFKPGSKIRIGRIVRGNDVTIKDDGISSKHLIIESVSGKWTIQDLDSCNGTFLNSTTLPPNTPFDLRENDTIKLGDCTTISVQMITMDSQDESVAKPKRNPRRQANVPGTSSVRATSGRKKAEAEPVETLGLEGGQIEDQSRINKKGRGRNKNLQEMPPQSVEVQVESKENLELEEGGEIESESKITKKGRGRSKDLQEMPLDGGKVKIESEENLEPLEVLGVQVDGKENFRPGKETSKKCQVQVDGKEKTNVTLIAGARVTRSRMNALNLGFDCGETAATESKITRKGRGRKKKLQEMPPQSSSEVETEGKERLVPEEVSKTCEVQAD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query349 2.2.26 [Sep-21-2011]
O23305386 FHA domain-containing pro yes no 0.352 0.318 0.547 1e-33
Q4KLN8 487 E3 ubiquitin-protein liga yes no 0.214 0.154 0.341 0.0002
Q8VC56 488 E3 ubiquitin-protein liga yes no 0.214 0.153 0.329 0.0004
>sp|O23305|Y4449_ARATH FHA domain-containing protein At4g14490 OS=Arabidopsis thaliana GN=At4g14490 PE=1 SV=1 Back     alignment and function desciption
 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/126 (54%), Positives = 88/126 (69%), Gaps = 3/126 (2%)

Query: 1   MEPPGMKLIMVRGPRSGETIEFKPGSKIRIGRIVRGNDVTIKDDGISSKHLIIESVSGKW 60
           M  P ++L+ V+GPR G+ +++KPGS IR+GRIVRGN++ IKD GIS+KHL IES SG W
Sbjct: 1   MVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDSGNW 60

Query: 61  TIQDLDSCNGTFLNSTTLPPNTPFDLRENDTIKLGDCTTISVQMITMDSQDESVAKPKRN 120
            IQDL S NGT LNS  L P T  +L + D IKLG+ T+I V  +  D Q++   K  RN
Sbjct: 61  VIQDLGSSNGTLLNSNALDPETSVNLGDGDVIKLGEYTSILVNFVIDDFQEK---KLTRN 117

Query: 121 PRRQAN 126
            RRQAN
Sbjct: 118 NRRQAN 123

Arabidopsis thaliana (taxid: 3702)
>sp|Q4KLN8|RNF8_RAT E3 ubiquitin-protein ligase RNF8 OS=Rattus norvegicus GN=Rnf8 PE=2 SV=1 Back     alignment and function description
>sp|Q8VC56|RNF8_MOUSE E3 ubiquitin-protein ligase RNF8 OS=Mus musculus GN=Rnf8 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query349
449433275406 PREDICTED: FHA domain-containing protein 0.661 0.568 0.392 2e-34
297800790360 hypothetical protein ARALYDRAFT_493457 [ 0.524 0.508 0.437 8e-34
15233463386 SMAD/FHA domain-containing protein [Arab 0.352 0.318 0.547 8e-32
224099895134 predicted protein [Populus trichocarpa] 0.297 0.776 0.644 2e-31
224111030383 predicted protein [Populus trichocarpa] 0.610 0.556 0.421 3e-31
449516595159 PREDICTED: FHA domain-containing protein 0.418 0.918 0.506 5e-31
255583880 455 DNA binding protein, putative [Ricinus c 0.369 0.283 0.532 1e-27
159163145118 Chain A, Solution Structure Of The Fha D 0.303 0.898 0.556 2e-27
297828690 560 hypothetical protein ARALYDRAFT_477473 [ 0.358 0.223 0.511 3e-27
255564078 455 conserved hypothetical protein [Ricinus 0.449 0.345 0.435 7e-27
>gi|449433275|ref|XP_004134423.1| PREDICTED: FHA domain-containing protein At4g14490-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 112/285 (39%), Positives = 152/285 (53%), Gaps = 54/285 (18%)

Query: 1   MEPPGMKLIMVRGPRSGETIEFKPGSKIRIGRIVRGNDVTIKDDGISSKHLII--ESVSG 58
           ME   + LI+V+GPR GET++F PG+ IRIGRIVRGN V IKD GIS+KHL I  ESVSG
Sbjct: 1   MESSSITLIIVKGPREGETLDFPPGATIRIGRIVRGNSVAIKDAGISTKHLSIESESVSG 60

Query: 59  KWTIQDLDSCNGTFLNSTTLPPNTPFDLRENDTIKLGDCTTISVQMITMDSQDESVAKPK 118
            W ++DLDS NGTF+N   LPP+  F L + DTIK G+ T+I V+   ++S +E   + +
Sbjct: 61  NWMLRDLDSSNGTFVNDIKLPPHDAFALHDGDTIKCGELTSIFVR---INSNEE--PRSR 115

Query: 119 RNPRRQANVPGTS-----SVRATSGRKKAEAEPVETLGLEGGQIEDQSRI--NKKGRGRN 171
           RNPRR+A    TS     SV  T GR++   E    +G     + +  R   ++KGRG  
Sbjct: 116 RNPRRKAVEKCTSSDVVGSVAGTRGRRRKVVEEDSVVGGCNDAMVESGRCLRSRKGRGLK 175

Query: 172 KNLQEMPPQS------VEVQVESKE-NLELEE---------------------------- 196
             +    P        ++V  ES   N+ + E                            
Sbjct: 176 DEIDSQVPDCKKTEDKIDVGRESGNVNIAVNEPGPKIATRSTRRTKNTVSLATNSVLEIV 235

Query: 197 ---GGEIESESKITKKG-RGRSKDLQEMPLDGGKV-KIESEENLE 236
              GGE+++E+K T+ G RGR K   E PLD   V K+E  EN+E
Sbjct: 236 PHVGGEVKAEAKKTRAGTRGRKKLQNEPPLDSSTVIKLEHIENVE 280

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297800790|ref|XP_002868279.1| hypothetical protein ARALYDRAFT_493457 [Arabidopsis lyrata subsp. lyrata] gi|297314115|gb|EFH44538.1| hypothetical protein ARALYDRAFT_493457 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15233463|ref|NP_193185.1| SMAD/FHA domain-containing protein [Arabidopsis thaliana] gi|73921130|sp|O23305.1|Y4449_ARATH RecName: Full=FHA domain-containing protein At4g14490 gi|2244805|emb|CAB10228.1| hypothetical protein [Arabidopsis thaliana] gi|7268155|emb|CAB78491.1| hypothetical protein [Arabidopsis thaliana] gi|20466564|gb|AAM20599.1| unknown protein [Arabidopsis thaliana] gi|22136374|gb|AAM91265.1| unknown protein [Arabidopsis thaliana] gi|332658050|gb|AEE83450.1| SMAD/FHA domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224099895|ref|XP_002311664.1| predicted protein [Populus trichocarpa] gi|222851484|gb|EEE89031.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224111030|ref|XP_002315723.1| predicted protein [Populus trichocarpa] gi|222864763|gb|EEF01894.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449516595|ref|XP_004165332.1| PREDICTED: FHA domain-containing protein At4g14490-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255583880|ref|XP_002532690.1| DNA binding protein, putative [Ricinus communis] gi|223527573|gb|EEF29690.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|159163145|pdb|1UHT|A Chain A, Solution Structure Of The Fha Domain Of Arabidopsis Thaliana Hypothetical Protein Back     alignment and taxonomy information
>gi|297828690|ref|XP_002882227.1| hypothetical protein ARALYDRAFT_477473 [Arabidopsis lyrata subsp. lyrata] gi|297328067|gb|EFH58486.1| hypothetical protein ARALYDRAFT_477473 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255564078|ref|XP_002523037.1| conserved hypothetical protein [Ricinus communis] gi|223537720|gb|EEF39341.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query349
TAIR|locus:2129785386 AT4G14490 [Arabidopsis thalian 0.352 0.318 0.539 1.6e-31
TAIR|locus:2074557 585 AT3G02400 [Arabidopsis thalian 0.934 0.557 0.310 1.5e-29
UNIPROTKB|E1C4A8255 RNF8 "Uncharacterized protein" 0.375 0.513 0.265 7.8e-05
TAIR|locus:2150220591 KAPP "kinase associated protei 0.289 0.170 0.319 0.00062
TAIR|locus:2129785 AT4G14490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 68/126 (53%), Positives = 88/126 (69%)

Query:     1 MEPPGMKLIMVRGPRSGETIEFKPGSKIRIGRIVRGNDVTIKDDGISSKHLIIESVSGKW 60
             M  P ++L+ V+GPR G+ +++KPGS IR+GRIVRGN++ IKD GIS+KHL IES SG W
Sbjct:     1 MVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDSGNW 60

Query:    61 TIQDLDSCNGTFLNSTTLPPNTPFDLRENDTIKLGDCTTISVQMITMDSQDESVAKPKRN 120
              IQDL S NGT LNS  L P T  +L + D IKLG+ T+I V  +  D Q++ +    RN
Sbjct:    61 VIQDLGSSNGTLLNSNALDPETSVNLGDGDVIKLGEYTSILVNFVIDDFQEKKLT---RN 117

Query:   121 PRRQAN 126
              RRQAN
Sbjct:   118 NRRQAN 123
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2074557 AT3G02400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1C4A8 RNF8 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
TAIR|locus:2150220 KAPP "kinase associated protein phosphatase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.7__2890__AT4G14490.1
annotation not avaliable (360 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query349
cd00060102 cd00060, FHA, Forkhead associated domain (FHA); fo 5e-21
pfam0049867 pfam00498, FHA, FHA domain 4e-15
smart0024052 smart00240, FHA, Forkhead associated domain 3e-09
COG1716191 COG1716, COG1716, FOG: FHA domain [Signal transduc 1e-06
TIGR03354396 TIGR03354, VI_FHA, type VI secretion system FHA do 5e-04
COG3456430 COG3456, COG3456, Predicted component of the type 0.004
>gnl|CDD|238017 cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information 
 Score = 86.3 bits (214), Expect = 5e-21
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 8  LIMVRGPRSGETIEFKPGSKIRIGRIVRGNDVTIKDDGISSKHLIIESVS-GKWTIQDLD 66
          L+++ G  SG      PG    IGR     D+ + D  +S +H +I     G   + DL 
Sbjct: 4  LVVLSGDASGRRYYLDPGGTYTIGRDSDNCDIVLDDPSVSRRHAVIRYDGDGGVVLIDLG 63

Query: 67 SCNGTFLNSTTLPPNTPFDLRENDTIKLG 95
          S NGTF+N   + P  P  LR+ D I+LG
Sbjct: 64 STNGTFVNGQRVSPGEPVRLRDGDVIRLG 92

Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation). Length = 102
>gnl|CDD|215951 pfam00498, FHA, FHA domain Back     alignment and domain information
>gnl|CDD|214578 smart00240, FHA, Forkhead associated domain Back     alignment and domain information
>gnl|CDD|224630 COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|234178 TIGR03354, VI_FHA, type VI secretion system FHA domain protein Back     alignment and domain information
>gnl|CDD|225987 COG3456, COG3456, Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 349
KOG1881 793 consensus Anion exchanger adaptor protein Kanadapt 99.81
PF0049868 FHA: FHA domain; InterPro: IPR000253 The forkhead- 99.77
KOG1880337 consensus Nuclear inhibitor of phosphatase-1 [Gene 99.62
cd00060102 FHA Forkhead associated domain (FHA); found in euk 99.62
TIGR03354396 VI_FHA type VI secretion system FHA domain protein 99.55
COG1716191 FOG: FHA domain [Signal transduction mechanisms] 99.46
PLN02927668 antheraxanthin epoxidase/zeaxanthin epoxidase 99.44
KOG1882293 consensus Transcriptional regulator SNIP1, contain 99.38
COG3456430 Predicted component of the type VI protein secreti 99.31
smart0024052 FHA Forkhead associated domain. Found in eukaryoti 99.3
TIGR02500410 type_III_yscD type III secretion apparatus protein 98.4
KOG0615475 consensus Serine/threonine protein kinase Chk2 and 97.79
KOG0245 1221 consensus Kinesin-like protein [Cytoskeleton] 96.98
KOG2293547 consensus Daxx-interacting protein MSP58/p78, cont 96.62
KOG1892 1629 consensus Actin filament-binding protein Afadin [C 96.15
TIGR01663 526 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase 94.34
KOG0241 1714 consensus Kinesin-like protein [Cytoskeleton] 92.62
PRK15367395 type III secretion system protein SsaD; Provisiona 92.61
>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only] Back     alignment and domain information 
Probab=99.81  E-value=3.1e-21  Score=201.67  Aligned_cols=206  Identities=23%  Similarity=0.327  Sum_probs=156.4

Q ss_pred             EEEEEEeCCCCCeEEEecCCCeEEEcCCCCCCCEEeCCCCCCcccEEEEEEC-----------CEEEEEeCCCCCceEEc
Q 037445            6 MKLIMVRGPRSGETIEFKPGSKIRIGRIVRGNDVTIKDDGISSKHLIIESVS-----------GKWTIQDLDSCNGTFLN   74 (349)
Q Consensus         6 l~L~Vi~Gp~~G~~~~L~~g~~~tIGR~~~~cDIvL~DpsVSR~HA~I~~~~-----------g~~~L~DLgStNGTfVN   74 (349)
                      +.|.+++.........|.....++|||. ..||+.+.||+|||.||.|+|..           .+|+|+|||||||||+|
T Consensus       157 ~~lEvlKeg~iiet~~l~~~~~~~fgr~-~~cD~~~eHpsISr~h~vlQy~~~~~~~p~~s~~~g~~i~dlgsThgt~~N  235 (793)
T KOG1881|consen  157 FQLEVLKEGAIIETEDLKGAAACLFGRL-GGCDVALEHPSISRFHAVLQYKASGPDDPCASNGEGWYIYDLGSTHGTFLN  235 (793)
T ss_pred             hhhhhhccCceeeeeecccceeEEeccc-CCCccccccCcccccceeeeccCCCCCccccCCCCceEEeeccccccceec
Confidence            4788888887777888887889999999 79999999999999999999952           25999999999999999


Q ss_pred             CeecCCCCcEEecCCCEEEECCcceEEEEEEeCCCccccccCCCCCCcccCCCCC----CCcccc-ccccccccCCcccc
Q 037445           75 STTLPPNTPFDLRENDTIKLGDCTTISVQMITMDSQDESVAKPKRNPRRQANVPG----TSSVRA-TSGRKKAEAEPVET  149 (349)
Q Consensus        75 G~rI~~~~~v~L~~GD~I~LG~st~~~v~f~~~d~~~eet~~lt~~~~~~~~~~~----~spV~a-ss~RKk~kaepve~  149 (349)
                      ..++++..+..++.|++++||++++.|+...+.++ .+...++........+..+    ...++. ...|.-..+.....
T Consensus       236 K~rvppk~yir~~Vg~v~~fggsTrl~i~Qgp~eD-~Epe~dls~te~~e~r~~~~E~~e~~~~~~~e~r~le~~q~~~~  314 (793)
T KOG1881|consen  236 KDRVPPKVYIRDRVGHVARFGGSTRLYIFQGPEED-EEPESDLSVTELKECREKKKELSDAEVEAAAEERILEAAQADDE  314 (793)
T ss_pred             cccCCCcchhhhhHHHHHHhcCceEEEEeeCCCcC-CCchhhcCHHHHHHHHHHHHhhhHhhhhhhHHHhhHHHHhhhhh
Confidence            99999999999999999999999999997776655 3455556555444333211    111111 02232233444557


Q ss_pred             cCcCCCccchhhhccccCCCccCCcccCCCCceeeeeccccceee------------ccCccccceeeEEEecCCcceee
Q 037445          150 LGLEGGQIEDQSRINKKGRGRNKNLQEMPPQSVEVQVESKENLEL------------EEGGEIESESKITKKGRGRSKDL  217 (349)
Q Consensus       150 lg~e~g~~e~e~~~~~~gr~rn~~~~~~~~~s~~~~~~~~e~~~~------------~eg~~~~~~~~~~~~~~~~~~~~  217 (349)
                      .|++|||.||+++++         .-+-+.++-  ..+++|.+|+            ++|  .+|+|.+-+-|-|-|-|.
T Consensus       315 ~g~swGmgeDa~ed~---------~~e~et~~~--~~~e~E~~y~qdPkk~l~~ffereg--~~l~~~~deq~~~~w~c~  381 (793)
T KOG1881|consen  315 EGCSWGMGEDADEDD---------ADEVETDAE--AMEEREATYIQDPKKALLGFFEREG--EDLEYEFDEQGHGKWVCR  381 (793)
T ss_pred             cCCcccCCccccccc---------ccccccccc--cccccccccccCHHHHHHHHHHhhh--hhhhhhhhhcCCceEEee
Confidence            899999999998872         121111111  2467888888            899  899999999999999999


Q ss_pred             EEeeecCCc
Q 037445          218 QEMPLDGGK  226 (349)
Q Consensus       218 ~~~~~~~~~  226 (349)
                      .++|++.-.
T Consensus       382 v~lp~~~~~  390 (793)
T KOG1881|consen  382 VELPVDDSG  390 (793)
T ss_pred             eeeeccccc
Confidence            999998643

>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins Back     alignment and domain information
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only] Back     alignment and domain information
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information
>TIGR03354 VI_FHA type VI secretion system FHA domain protein Back     alignment and domain information
>COG1716 FOG: FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase Back     alignment and domain information
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] Back     alignment and domain information
>smart00240 FHA Forkhead associated domain Back     alignment and domain information
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family Back     alignment and domain information
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0245 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms] Back     alignment and domain information
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton] Back     alignment and domain information
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase Back     alignment and domain information
>KOG0241 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>PRK15367 type III secretion system protein SsaD; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query349
1uht_A118 Solution Structure Of The Fha Domain Of Arabidopsis 2e-30
1mzk_A139 Nmr Structure Of Kinase-Interacting Fha Domain Of K 1e-04
3oun_A157 Crystal Structure Of The Fhaa Fha Domain Complexed 6e-04
>pdb|1UHT|A Chain A, Solution Structure Of The Fha Domain Of Arabidopsis Thaliana Hypothetical Protein Length = 118 Back     alignment and structure 
Iteration: 1

 Score =  129 bits (324), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/106 (55%), Positives = 77/106 (72%)
Query: 1   MEPPGMKLIMVRGPRSGETIEFKPGSKIRIGRIVRGNDVTIKDDGISSKHLIIESVSGKW 60
           M  P ++L+ V+GPR G+ +++KPGS IR+GRIVRGN++ IKD GIS+KHL IES SG W
Sbjct: 8   MVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDSGNW 67
Query: 61  TIQDLDSCNGTFLNSTTLPPNTPFDLRENDTIKLGDCTTISVQMIT 106
            IQDL S NGT LNS  L P T  +L + D IKLG+ T+I V  ++
Sbjct: 68  VIQDLGSSNGTLLNSNALDPETSVNLGDGDVIKLGEYTSILVNFVS 113
>pdb|3OUN|A Chain A, Crystal Structure Of The Fhaa Fha Domain Complexed With The Intracellular Domain Of Rv3910 Length = 157 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query349
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 5e-31
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 1e-21
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 2e-21
3gqs_A106 Adenylate cyclase-like protein; FHA domain, struct 2e-19
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 3e-19
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 1e-18
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 7e-18
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 3e-17
2xt9_B115 Putative signal transduction protein GARA; lyase-s 4e-17
3po8_A100 RV0020C protein, putative uncharacterized protein 2e-16
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 3e-16
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 3e-16
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 1e-15
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 8e-15
2jqj_A151 DNA damage response protein kinase DUN1; protein/p 8e-13
3els_A158 PRE-mRNA leakage protein 1; intrinsically unstruct 3e-12
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 7e-12
3elv_A205 PRE-mRNA leakage protein 1; intrinsically unstruct 3e-11
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 3e-10
3hx1_A131 SLR1951 protein; P74513_SYNY3, adenylate cyclase-l 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-08
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 5e-08
1wln_A120 Afadin; beta sandwich, FHA domain, structural geno 2e-07
1dmz_A158 Protein (protein kinase SPK1); beta-sandwich, anti 1e-06
3huf_A325 DNA repair and telomere maintenance protein NBS1; 5e-06
1qu5_A182 Protein kinase SPK1; FHA, RAD53, transferase; NMR 1e-05
3fm8_A124 Kinesin-like protein KIF13B; kinesin, GAP, GTPase 7e-05
4a0e_A123 YSCD, type III secretion protein; transport protei 3e-04
3i6u_A419 CDS1, serine/threonine-protein kinase CHK2; Ser/Th 5e-04
2brf_A110 Bifunctional polynucleotide phosphatase/kinase; hy 7e-04
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Length = 118 Back     alignment and structure
 Score =  112 bits (282), Expect = 5e-31
 Identities = 59/106 (55%), Positives = 77/106 (72%)

Query: 1   MEPPGMKLIMVRGPRSGETIEFKPGSKIRIGRIVRGNDVTIKDDGISSKHLIIESVSGKW 60
           M  P ++L+ V+GPR G+ +++KPGS IR+GRIVRGN++ IKD GIS+KHL IES SG W
Sbjct: 8   MVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDSGNW 67

Query: 61  TIQDLDSCNGTFLNSTTLPPNTPFDLRENDTIKLGDCTTISVQMIT 106
            IQDL S NGT LNS  L P T  +L + D IKLG+ T+I V  ++
Sbjct: 68  VIQDLGSSNGTLLNSNALDPETSVNLGDGDVIKLGEYTSILVNFVS 113
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Length = 140 Back     alignment and structure
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Length = 106 Back     alignment and structure
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Length = 138 Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Length = 132 Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Length = 128 Back     alignment and structure
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Length = 145 Back     alignment and structure
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Length = 115 Back     alignment and structure
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} PDB: 3poa_A* 2lc1_A Length = 100 Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Length = 143 Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157 Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Length = 162 Back     alignment and structure
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Length = 116 Back     alignment and structure
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Length = 151 Back     alignment and structure
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Length = 158 Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Length = 127 Back     alignment and structure
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Length = 205 Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Length = 164 Back     alignment and structure
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Length = 131 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Length = 149 Back     alignment and structure
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 Length = 120 Back     alignment and structure
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A* Length = 158 Back     alignment and structure
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* Length = 325 Back     alignment and structure
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 Length = 182 Back     alignment and structure
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A* Length = 124 Back     alignment and structure
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} Length = 123 Back     alignment and structure
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419 Back     alignment and structure
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A* Length = 110 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query349
4h87_A130 Kanadaptin; FHA domain of PF00498, mRNA processing 99.91
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 99.9
3gqs_A106 Adenylate cyclase-like protein; FHA domain, struct 99.88
2xt9_B115 Putative signal transduction protein GARA; lyase-s 99.86
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 99.86
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 99.85
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 99.84
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 99.84
3po8_A100 RV0020C protein, putative uncharacterized protein 99.84
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 99.83
3els_A158 PRE-mRNA leakage protein 1; intrinsically unstruct 99.83
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 99.82
3hx1_A131 SLR1951 protein; P74513_SYNY3, adenylate cyclase-l 99.81
2jqj_A151 DNA damage response protein kinase DUN1; protein/p 99.81
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 99.8
3elv_A205 PRE-mRNA leakage protein 1; intrinsically unstruct 99.8
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 99.79
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 99.78
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 99.78
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 99.77
1dmz_A158 Protein (protein kinase SPK1); beta-sandwich, anti 99.76
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 99.75
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 99.74
1wln_A120 Afadin; beta sandwich, FHA domain, structural geno 99.73
1qu5_A182 Protein kinase SPK1; FHA, RAD53, transferase; NMR 99.72
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 99.68
4ejq_A154 Kinesin-like protein KIF1A; homodimer, FHA domain, 99.6
3fm8_A124 Kinesin-like protein KIF13B; kinesin, GAP, GTPase 99.58
4a0e_A123 YSCD, type III secretion protein; transport protei 99.57
3huf_A325 DNA repair and telomere maintenance protein NBS1; 99.53
3uv0_A102 Mutator 2, isoform B; FHA, protein binding, dimeri 99.34
3i6u_A419 CDS1, serine/threonine-protein kinase CHK2; Ser/Th 99.26
3kt9_A102 Aprataxin; FHA domain, beta sandwich, beta sheet, 99.2
4egx_A184 Kinesin-like protein KIF1A; FHA domain, transport 98.95
1wv3_A238 Similar to DNA segregation ATPase and related prot 98.86
2brf_A110 Bifunctional polynucleotide phosphatase/kinase; hy 98.83
1yj5_C143 5' polynucleotide kinase-3' phosphatase FHA domai; 98.81
1ujx_A119 Polynucleotide kinase 3'-phosphatase; DNA repair, 98.64
1wv3_A238 Similar to DNA segregation ATPase and related prot 96.33
3gqs_A106 Adenylate cyclase-like protein; FHA domain, struct 91.34
3po8_A100 RV0020C protein, putative uncharacterized protein 89.7
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 88.88
2xt9_B115 Putative signal transduction protein GARA; lyase-s 88.11
1wln_A120 Afadin; beta sandwich, FHA domain, structural geno 86.54
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 85.53
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 84.15
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 83.54
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 82.4
3fm8_A124 Kinesin-like protein KIF13B; kinesin, GAP, GTPase 81.26
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens} Back     alignment and structure
Probab=99.91  E-value=7.4e-24  Score=180.77  Aligned_cols=97  Identities=27%  Similarity=0.419  Sum_probs=88.7

Q ss_pred             cEEEEEEeCCCCCeEEEecCCCeEEEcCCCCCCCEEeCCCCCCcccEEEEE-----------ECCEEEEEeCCCCCceEE
Q 037445            5 GMKLIMVRGPRSGETIEFKPGSKIRIGRIVRGNDVTIKDDGISSKHLIIES-----------VSGKWTIQDLDSCNGTFL   73 (349)
Q Consensus         5 ~l~L~Vi~Gp~~G~~~~L~~g~~~tIGR~~~~cDIvL~DpsVSR~HA~I~~-----------~~g~~~L~DLgStNGTfV   73 (349)
                      .++|.|++++.....+.|..+..++|||+ ++|||+|+|+.|||+||.|++           .++.|+|+||+|+|||||
T Consensus        20 ~~~L~v~k~g~~~~~~~L~~~~~~~IGR~-~~~di~l~~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~Dl~StNGT~v   98 (130)
T 4h87_A           20 PYSLETLKGGTILGTRSLKGTSYCLFGRL-SGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHGTFL   98 (130)
T ss_dssp             CCEEEEEETTEEEEEEECTTCSEEEEESS-TTSSEECCCTTSCSSCEEEEEBCCCCCC------CCEEEEECSCSSCEEE
T ss_pred             CEEEEEEECCeeeeeEEeCCCceEEEcCC-cCCCEEeCCCCcchhcEEEEEecccCccceeccCCcceEeeCCCCCceEE
Confidence            47999999998888999987788999999 899999999999999999976           356799999999999999


Q ss_pred             cCeecCCCCcEEecCCCEEEECCcceEEE
Q 037445           74 NSTTLPPNTPFDLRENDTIKLGDCTTISV  102 (349)
Q Consensus        74 NG~rI~~~~~v~L~~GD~I~LG~st~~~v  102 (349)
                      ||++|.++.++.|++||+|+||.+++.|+
T Consensus        99 Ng~ri~~~~~~~L~~GD~I~~G~str~yv  127 (130)
T 4h87_A           99 NKTRIPPRTYCRVHVGHVVRFGGSTRLFI  127 (130)
T ss_dssp             TTEECCTTCCEECCTTCEEEETTCSEEEE
T ss_pred             CCEECCCCceeECCCCCEEEECCceEEEE
Confidence            99999998999999999999999988776
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Back     alignment and structure
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Back     alignment and structure
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Back     alignment and structure
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Back     alignment and structure
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Back     alignment and structure
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Back     alignment and structure
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Back     alignment and structure
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Back     alignment and structure
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Back     alignment and structure
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Back     alignment and structure
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Back     alignment and structure
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Back     alignment and structure
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A* Back     alignment and structure
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A Back     alignment and structure
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A* Back     alignment and structure
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A Back     alignment and structure
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* Back     alignment and structure
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster} Back     alignment and structure
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Back     alignment and structure
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0 Back     alignment and structure
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens} Back     alignment and structure
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4 Back     alignment and structure
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A* Back     alignment and structure
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4 Back     alignment and structure
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Back     alignment and structure
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Back     alignment and structure
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Back     alignment and structure
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Back     alignment and structure
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Back     alignment and structure
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 349
d1uhta_118 b.26.1.2 (A:) FHA domain containing protein At4G14 2e-28
d1mzka_122 b.26.1.2 (A:) Kinase associated protein phosphatas 5e-15
d2piea1127 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 2e-10
d2ff4a399 b.26.1.2 (A:284-382) Probable regulatory protein E 2e-10
d2affa198 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapi 2e-10
d1dmza_158 b.26.1.2 (A:) Phosphotyrosine binding domain of Ra 2e-09
d1wlna1107 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [T 7e-09
d1g6ga_127 b.26.1.2 (A:) Phosphotyrosine binding domain of Ra 3e-08
d2g1la1102 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {H 6e-07
d1gxca_116 b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [T 3e-06
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 118 Back     information, alignment and structure

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: FHA domain containing protein At4G14490
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  105 bits (262), Expect = 2e-28
 Identities = 59/105 (56%), Positives = 76/105 (72%)

Query: 1   MEPPGMKLIMVRGPRSGETIEFKPGSKIRIGRIVRGNDVTIKDDGISSKHLIIESVSGKW 60
           M  P ++L+ V+GPR G+ +++KPGS IR+GRIVRGN++ IKD GIS+KHL IES SG W
Sbjct: 8   MVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDSGNW 67

Query: 61  TIQDLDSCNGTFLNSTTLPPNTPFDLRENDTIKLGDCTTISVQMI 105
            IQDL S NGT LNS  L P T  +L + D IKLG+ T+I V  +
Sbjct: 68  VIQDLGSSNGTLLNSNALDPETSVNLGDGDVIKLGEYTSILVNFV 112
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 122 Back     information, alignment and structure
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Length = 127 Back     information, alignment and structure
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 99 Back     information, alignment and structure
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} Length = 98 Back     information, alignment and structure
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 158 Back     information, alignment and structure
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Length = 107 Back     information, alignment and structure
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 127 Back     information, alignment and structure
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query349
d1uhta_118 FHA domain containing protein At4G14490 {Thale cre 99.91
d1mzka_122 Kinase associated protein phosphatase {Thale cress 99.87
d2ff4a399 Probable regulatory protein EmbR, C-terminal domai 99.83
d2affa198 Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} 99.81
d1lgpa_113 Cell cycle checkpoint protein Chfr {Human (Homo sa 99.73
d1gxca_116 Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} 99.72
d2piea1127 Ubiquitin ligase protein RNF8 {Human (Homo sapiens 99.71
d1g6ga_127 Phosphotyrosine binding domain of Rad53 {Baker's y 99.7
d1dmza_158 Phosphotyrosine binding domain of Rad53 {Baker's y 99.69
d2brfa1101 Polynucleotide kinase 3'-phosphatase {Human (Homo 99.64
d1wlna1107 Afadin {Mouse (Mus musculus) [TaxId: 10090]} 99.6
d2g1la1102 Kinesin-like protein kif1c {Human (Homo sapiens) [ 99.57
d2affa198 Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} 96.02
d2ff4a399 Probable regulatory protein EmbR, C-terminal domai 94.96
d2g1la1102 Kinesin-like protein kif1c {Human (Homo sapiens) [ 87.32
d1wlna1107 Afadin {Mouse (Mus musculus) [TaxId: 10090]} 80.47
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: FHA domain containing protein At4G14490
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=9.6e-25  Score=181.27  Aligned_cols=105  Identities=56%  Similarity=1.002  Sum_probs=97.7

Q ss_pred             CCCCcEEEEEEeCCCCCeEEEecCCCeEEEcCCCCCCCEEeCCCCCCcccEEEEEECCEEEEEeCCCCCceEEcCeecCC
Q 037445            1 MEPPGMKLIMVRGPRSGETIEFKPGSKIRIGRIVRGNDVTIKDDGISSKHLIIESVSGKWTIQDLDSCNGTFLNSTTLPP   80 (349)
Q Consensus         1 M~PP~l~L~Vi~Gp~~G~~~~L~~g~~~tIGR~~~~cDIvL~DpsVSR~HA~I~~~~g~~~L~DLgStNGTfVNG~rI~~   80 (349)
                      |.||.++|++++|+..|+.+.|..+..++|||+...|||+|+|+.|||.||.|.++++.|+|+|++|+|||||||++|.+
T Consensus         8 ~~~p~l~L~v~~Gp~~g~~~~l~~~~~~~iGR~~~~~di~l~d~~VSr~Ha~i~~~~~~~~i~Dl~S~nGT~vng~~l~~   87 (118)
T d1uhta_           8 MVTPSLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDSGNWVIQDLGSSNGTLLNSNALDP   87 (118)
T ss_dssp             CCSCEEEEEESSSTTTTCBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEECSSSEEEECCCCSSCCEESSSBCCT
T ss_pred             CCCCcEEEEEEeCCCCCcEEEeCCCCEEEECCCCcCCeEEeCccCcchheeEEEEECCEEEEEECCCcceeEECCEEcCC
Confidence            56889999999999999999998777899999745899999999999999999999999999999999999999999998


Q ss_pred             CCcEEecCCCEEEECCcceEEEEEE
Q 037445           81 NTPFDLRENDTIKLGDCTTISVQMI  105 (349)
Q Consensus        81 ~~~v~L~~GD~I~LG~st~~~v~f~  105 (349)
                      +.++.|.+||+|+||.+++.++.|.
T Consensus        88 ~~~~~L~~Gd~i~lG~~~~~~v~~~  112 (118)
T d1uhta_          88 ETSVNLGDGDVIKLGEYTSILVNFV  112 (118)
T ss_dssp             TCEEECCTTEEEEETTTEEEEEEEE
T ss_pred             CcEEECCCCCEEEECCEEEEEEEec
Confidence            8899999999999999988887665
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure