Citrus Sinensis ID: 037449

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------10
Protein Sequence
MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREIYRISFV
Secondary Structure (PSIPRED)
ccccccccccEEEEccccEEccccccccccccccccccccHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEcccccEccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHHHHcHHHHHHHHHHHHEEEcc
Coil and Loop (DISEMBL)
mapkqpntglfvglnkgyivtkkelqprsadrkgktskrVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREIYRISFV
Flexible Loop (DISEMBL)
mapkqpntglfvglnkgyivtkkelqprsadrkgktskrvhfvrtvirevagfapyekRITEllkvgkdkralkvakrklgthkrakkkreiyrisfv
Low Complexity Region (SEG)
MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREIYRISFV
Disordered region (IsUnstruct)
********GLFVGLNKGYIVT*****************RVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALK************************
Disordered Region (DISOPRED)
*****PN*GLFVGLNKGYIV**********************VRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREIYRISFV
Disordered Region (DISEMBL)
MAPKQPNTGLFVGLNKGYIVTKKEL*************RVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRK*********KREIYRISFV
Disordered Region (DISPRO)
******NTGLFVGLNKGYIVTK*************TSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREIYRISFV
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREIYRISFV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	98	2.2.26 [Sep-21-2011]
P52866	106	60S ribosomal protein L36	N/A	no	0.908	0.839	0.786	2e-34
O80929	113	60S ribosomal protein L36	yes	no	0.857	0.743	0.821	1e-32
Q9M352	112	60S ribosomal protein L36	no	no	0.928	0.812	0.769	3e-32
Q9LZ57	108	60S ribosomal protein L36	no	no	0.857	0.777	0.809	2e-31
Q9LRB8	101	60S ribosomal protein L36	N/A	no	0.836	0.811	0.695	7e-24
Q92365	99	60S ribosomal protein L36	yes	no	0.877	0.868	0.582	8e-22
Q98TF6	105	60S ribosomal protein L36	yes	no	0.897	0.838	0.593	1e-21
Q6DER2	105	60S ribosomal protein L36	yes	no	0.897	0.838	0.582	3e-21
Q66KU4	105	60S ribosomal protein L36	N/A	no	0.897	0.838	0.582	3e-21
Q8UW19	105	60S ribosomal protein L36	N/A	no	0.897	0.838	0.582	6e-21

>sp|P52866|RL36_DAUCA 60S ribosomal protein L36 OS=Daucus carota GN=RPL36 PE=3 SV=2

 Score =  144 bits (362), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 70/89 (78%), Positives = 79/89 (88%)

Query: 1  MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 60
          MAPKQPNTGLFVGLNKG+IVTKKEL PR +DRKGKTSKR HFVR +IREVAGF PYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRTHFVRNLIREVAGFXPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKK 89
          TELLKVGKDKRALKV + K+G  + +K++
Sbjct: 61 TELLKVGKDKRALKVRQEKVGHSQESKEE 89

Daucus carota (taxid: 4039)

>sp|O80929|RL361_ARATH 60S ribosomal protein L36-1 OS=Arabidopsis thaliana GN=RPL36A PE=2 SV=1

 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 69/84 (82%), Positives = 76/84 (90%)

Query: 8  TGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVG 67
          TGLFVGLNKG++VT++EL PR   RKGKTSKR  F+R +IREVAG APYEKRITELLKVG
Sbjct: 8  TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query: 68 KDKRALKVAKRKLGTHKRAKKKRE 91
          KDKRALKVAKRKLGTHKRAK+KRE
Sbjct: 68 KDKRALKVAKRKLGTHKRAKRKRE 91

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M352|RL362_ARATH 60S ribosomal protein L36-2 OS=Arabidopsis thaliana GN=RPL36B PE=2 SV=1

 Score =  137 bits (344), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 70/91 (76%), Positives = 78/91 (85%)

Query: 1  MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 60
          M   Q  TGLFVGLNKG++VT++EL PR   RKGKTSKR  F+R +I+EVAG APYEKRI
Sbjct: 1  MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91
          TELLKVGKDKRALKVAKRKLGTHKRAK+KRE
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKRKRE 91

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ57|RL363_ARATH 60S ribosomal protein L36-3 OS=Arabidopsis thaliana GN=RPL36C PE=3 SV=1

 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/84 (80%), Positives = 76/84 (90%)

Query: 8  TGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVG 67
          TGLFVGLNKG++VTK+E  PR  +RKGKTSKR  F+R +I+EVAG APYEKRITELLKVG
Sbjct: 4  TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query: 68 KDKRALKVAKRKLGTHKRAKKKRE 91
          KDKRALKVAKRKLGTHKRAK+KRE
Sbjct: 64 KDKRALKVAKRKLGTHKRAKRKRE 87

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRB8|RL36_ENTCP 60S ribosomal protein L36 OS=Enteromorpha compressa GN=RL36 PE=3 SV=1

 Score =  108 bits (271), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 57/82 (69%), Positives = 66/82 (80%)

Query: 10 LFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKD 69
          + VGLNKG+ VTKK   PR + RKG  S+RV  VR V+REVAG+APYE+R+ ELLKVGKD
Sbjct: 4  IAVGLNKGHQVTKKAGTPRPSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKD 63

Query: 70 KRALKVAKRKLGTHKRAKKKRE 91
          KRALK+ KRKLGTH R KKKRE
Sbjct: 64 KRALKMCKRKLGTHMRGKKKRE 85

Enteromorpha compressa (taxid: 63659)

>sp|Q92365|RL36A_SCHPO 60S ribosomal protein L36-A OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl36a PE=3 SV=2

 Score =  102 bits (253), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 70/91 (76%), Gaps = 5/91 (5%)

Query: 1  MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 60
          MAP     GL VGLNKG ++TK++L  R + RKG+ SKR  FVR+++REVAGFAPYE+R+
Sbjct: 1  MAP-----GLVVGLNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRV 55

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91
           EL++  +DKRA K+AK++LGT KRAK K E
Sbjct: 56 MELIRNSQDKRARKLAKKRLGTLKRAKGKIE 86

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q98TF6|RL36_CHICK 60S ribosomal protein L36 OS=Gallus gallus GN=RPL36 PE=3 SV=1

 Score =  101 bits (251), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 66/91 (72%), Gaps = 3/91 (3%)

Query: 1  MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 60
          MA + P   + VGLNKGY VTK   +PR   R+G+ +K   FVR +IREV GFAPYE+R 
Sbjct: 1  MAIRYP---MAVGLNKGYKVTKNVSKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRA 57

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91
           ELLKV KDKRALK  K+++GTH RAK+KRE
Sbjct: 58 MELLKVSKDKRALKFIKKRVGTHIRAKRKRE 88

Gallus gallus (taxid: 9031)

>sp|Q6DER2|RL36_XENTR 60S ribosomal protein L36 OS=Xenopus tropicalis GN=rpl36 PE=3 SV=1

 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 66/91 (72%), Gaps = 3/91 (3%)

Query: 1  MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 60
          MA + P   + VGLNKG+ VTK   +PR   R+G+ +K   FVR +IREV GFAPYE+R 
Sbjct: 1  MAIRYP---MAVGLNKGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRA 57

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91
           ELLKV KDKRALK  K+++GTH RAK+KRE
Sbjct: 58 MELLKVSKDKRALKFIKKRIGTHIRAKRKRE 88

Xenopus tropicalis (taxid: 8364)

>sp|Q66KU4|RL36_XENLA 60S ribosomal protein L36 OS=Xenopus laevis GN=rpl36 PE=3 SV=1

 Score =  100 bits (248), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 66/91 (72%), Gaps = 3/91 (3%)

Query: 1  MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 60
          MA + P   + VGLNKG+ VTK   +PR   R+G+ +K   FVR +IREV GFAPYE+R 
Sbjct: 1  MAIRYP---MAVGLNKGHRVTKNVTKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRA 57

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91
           ELLKV KDKRALK  K+++GTH RAK+KRE
Sbjct: 58 MELLKVSKDKRALKFIKKRIGTHIRAKRKRE 88

Xenopus laevis (taxid: 8355)

>sp|Q8UW19|RL36_LAPHA 60S ribosomal protein L36 OS=Lapemis hardwickii GN=RPL36 PE=3 SV=1

 Score = 99.4 bits (246), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 66/91 (72%), Gaps = 3/91 (3%)

Query: 1  MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 60
          MA + P   + VGLNKG+ VTK   +PR   R+G+ +K   FVR +IREV GFAPYE+R 
Sbjct: 1  MAIRYP---MAVGLNKGHKVTKNVSKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRA 57

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91
           ELLKV KDKRALK  K+++GTH RAK+KRE
Sbjct: 58 MELLKVSKDKRALKFIKKRVGTHIRAKRKRE 88

Lapemis hardwickii (taxid: 8781)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
297745282	145	unnamed protein product [Vitis vinifera]	0.928	0.627	0.923	1e-40
225454218	110	PREDICTED: 60S ribosomal protein L36-3 [	0.928	0.827	0.923	1e-40
225464487	110	PREDICTED: 60S ribosomal protein L36-3 i	0.928	0.827	0.934	2e-40
224116904	110	predicted protein [Populus trichocarpa]	0.928	0.827	0.912	1e-39
388509878	111	unknown [Lotus japonicus]	0.928	0.819	0.901	1e-39
388500776	110	unknown [Lotus japonicus]	0.928	0.827	0.901	1e-39
224079093	110	predicted protein [Populus trichocarpa]	0.928	0.827	0.923	1e-39
374096129	110	60S ribosomal protein L36 [Wolffia austr	0.928	0.827	0.912	2e-39
449446023	110	PREDICTED: 60S ribosomal protein L36-2-l	0.928	0.827	0.912	3e-39
418731052	110	ribosomal protein L36 [Solanum tuberosum	0.928	0.827	0.890	3e-39

>gi|297745282|emb|CBI40362.3| unnamed protein product [Vitis vinifera]

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 84/91 (92%), Positives = 88/91 (96%)

Query: 1   MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 60
           MAPKQPNTGLFVGLNKG++VTKKEL PR +DRKGKTSKRVHFVR +IREVAGFAPYEKRI
Sbjct: 36  MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVRNIIREVAGFAPYEKRI 95

Query: 61  TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91
           TELLKVGKDKRALKVAKRKLGTHKRAKKKRE
Sbjct: 96  TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 126

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454218|ref|XP_002273507.1| PREDICTED: 60S ribosomal protein L36-3 [Vitis vinifera] gi|147820141|emb|CAN64895.1| hypothetical protein VITISV_013224 [Vitis vinifera]

 Score =  169 bits (429), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 84/91 (92%), Positives = 88/91 (96%)

Query: 1  MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 60
          MAPKQPNTGLFVGLNKG++VTKKEL PR +DRKGKTSKRVHFVR +IREVAGFAPYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHVVTKKELPPRPSDRKGKTSKRVHFVRNIIREVAGFAPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91
          TELLKVGKDKRALKVAKRKLGTHKRAKKKRE
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464487|ref|XP_002268801.1| PREDICTED: 60S ribosomal protein L36-3 isoform 2 [Vitis vinifera] gi|225464489|ref|XP_002268754.1| PREDICTED: 60S ribosomal protein L36-3 isoform 1 [Vitis vinifera] gi|302143845|emb|CBI22706.3| unnamed protein product [Vitis vinifera]

 Score =  169 bits (429), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 85/91 (93%), Positives = 88/91 (96%)

Query: 1  MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 60
          MAPKQPNTGLFVGLNKG+IVTKKEL PR +DRKGKTSKRVHFVR +IREVAGFAPYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELPPRPSDRKGKTSKRVHFVRNLIREVAGFAPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91
          TELLKVGKDKRALKVAKRKLGTHKRAKKKRE
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116904|ref|XP_002317423.1| predicted protein [Populus trichocarpa] gi|222860488|gb|EEE98035.1| predicted protein [Populus trichocarpa]

 Score =  167 bits (422), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 83/91 (91%), Positives = 88/91 (96%)

Query: 1  MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 60
          MAPKQPNTGLFVGLNKG+IVTKKEL PR +DRKGKTSKRV FVR++IREVAGFAPYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVQFVRSLIREVAGFAPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91
          TELLKVGKDKRALKVAKRKLGTHKRAK+KRE
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKRKRE 91

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509878|gb|AFK43005.1| unknown [Lotus japonicus]

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 82/91 (90%), Positives = 89/91 (97%)

Query: 1  MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 60
          MAPKQP+TGLFVGLNKG++VTKKEL PR +DRKGKTSKRVHFVR++IREVAGFAPYEKRI
Sbjct: 1  MAPKQPSTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVHFVRSLIREVAGFAPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91
          TELLKVGKDKRALKVAKRKLGTHKRAK+KRE
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKRKRE 91

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500776|gb|AFK38454.1| unknown [Lotus japonicus]

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 82/91 (90%), Positives = 89/91 (97%)

Query: 1  MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 60
          MAPKQP+TGLFVGLNKG++VTKKEL PR +DRKGKTSKRVHFVR++IREVAGFAPYEKRI
Sbjct: 1  MAPKQPSTGLFVGLNKGHVVTKKELAPRPSDRKGKTSKRVHFVRSLIREVAGFAPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91
          TELLKVGKDKRALKVAKRKLGTHKRAK+KRE
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKRKRE 91

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079093|ref|XP_002305746.1| predicted protein [Populus trichocarpa] gi|118484529|gb|ABK94139.1| unknown [Populus trichocarpa] gi|118487398|gb|ABK95527.1| unknown [Populus trichocarpa] gi|222848710|gb|EEE86257.1| predicted protein [Populus trichocarpa]

 Score =  166 bits (421), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 84/91 (92%), Positives = 88/91 (96%)

Query: 1  MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 60
          MAPKQPNTGLFVGLNKG+IVTKKEL PR +DRKGKTSKRV FVR++IREVAGFAPYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKTSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91
          TELLKVGKDKRALKVAKRKLGTHKRAKKKRE
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374096129|gb|AEY84977.1| 60S ribosomal protein L36 [Wolffia australiana]

 Score =  166 bits (419), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 83/91 (91%), Positives = 87/91 (95%)

Query: 1  MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 60
          MAPK PNTGLFVGLNKG+IVTK+EL PR +DRKGKTSKRVHFVR VIREVAGFAPYEKRI
Sbjct: 1  MAPKPPNTGLFVGLNKGHIVTKRELPPRPSDRKGKTSKRVHFVRNVIREVAGFAPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91
          TELLKVGKDKRALK+AKRKLGTHKRAKKKRE
Sbjct: 61 TELLKVGKDKRALKLAKRKLGTHKRAKKKRE 91

Source: Wolffia australiana

Species: Wolffia australiana

Genus: Wolffia

Family: Araceae

Order: Alismatales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446023|ref|XP_004140771.1| PREDICTED: 60S ribosomal protein L36-2-like [Cucumis sativus] gi|449469345|ref|XP_004152381.1| PREDICTED: 60S ribosomal protein L36-2-like [Cucumis sativus] gi|449518411|ref|XP_004166235.1| PREDICTED: 60S ribosomal protein L36-2-like [Cucumis sativus] gi|449528180|ref|XP_004171084.1| PREDICTED: 60S ribosomal protein L36-2-like [Cucumis sativus] gi|307136494|gb|ADN34294.1| 60S ribosomal protein l36e [Cucumis melo subsp. melo]

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 83/91 (91%), Positives = 88/91 (96%)

Query: 1  MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 60
          MAPKQPNTGLFVGLNKG+IVTKKEL PR +DRKGK+SKRV FVR++IREVAGFAPYEKRI
Sbjct: 1  MAPKQPNTGLFVGLNKGHIVTKKELAPRPSDRKGKSSKRVLFVRSLIREVAGFAPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91
          TELLKVGKDKRALKVAKRKLGTHKRAKKKRE
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|418731052|gb|AFX67004.1| ribosomal protein L36 [Solanum tuberosum]

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 81/91 (89%), Positives = 88/91 (96%)

Query: 1  MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 60
          MAPKQPNTGL VGLNKG++VTKKEL PR +DRKGKTSKR+HFVR++IREVAGFAPYEKRI
Sbjct: 1  MAPKQPNTGLSVGLNKGHVVTKKELAPRPSDRKGKTSKRIHFVRSLIREVAGFAPYEKRI 60

Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91
          TELLKVGKDKRALKVAKRKLGTHKRAK+KRE
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKRKRE 91

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	98
TAIR|locus:2084395	112	AT3G53740 [Arabidopsis thalian	0.928	0.812	0.769	2.3e-32
TAIR|locus:2040756	113	AT2G37600 [Arabidopsis thalian	0.857	0.743	0.821	3.7e-32
TAIR|locus:2181758	108	AT5G02450 [Arabidopsis thalian	0.857	0.777	0.809	2e-31
UNIPROTKB|Q98TF6	105	RPL36 "60S ribosomal protein L	0.897	0.838	0.593	2.6e-22
POMBASE|SPCC970.05	99	rpl3601 "60S ribosomal protein	0.846	0.838	0.602	3.4e-22
UNIPROTKB|Q9Y3U8	105	RPL36 "60S ribosomal protein L	0.897	0.838	0.582	7e-22
UNIPROTKB|F2Z5K6	105	RPL36 "Uncharacterized protein	0.897	0.838	0.582	7e-22
RGD|2322117	105	LOC100360439 "ribosomal protei	0.897	0.838	0.582	7e-22
UNIPROTKB|Q3T171	105	RPL36 "60S ribosomal protein L	0.897	0.838	0.582	1.1e-21
RGD|2319728	104	LOC100361644 "ribosomal protei	0.897	0.846	0.571	1.5e-21

TAIR|locus:2084395 AT3G53740 [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
 Identities = 70/91 (76%), Positives = 78/91 (85%)

Query:     1 MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 60
             M   Q  TGLFVGLNKG++VT++EL PR   RKGKTSKR  F+R +I+EVAG APYEKRI
Sbjct:     1 MTTPQVKTGLFVGLNKGHVVTRRELAPRPRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRI 60

Query:    61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91
             TELLKVGKDKRALKVAKRKLGTHKRAK+KRE
Sbjct:    61 TELLKVGKDKRALKVAKRKLGTHKRAKRKRE 91

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2040756 AT2G37600 [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 69/84 (82%), Positives = 76/84 (90%)

Query:     8 TGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVG 67
             TGLFVGLNKG++VT++EL PR   RKGKTSKR  F+R +IREVAG APYEKRITELLKVG
Sbjct:     8 TGLFVGLNKGHVVTRRELAPRPNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVG 67

Query:    68 KDKRALKVAKRKLGTHKRAKKKRE 91
             KDKRALKVAKRKLGTHKRAK+KRE
Sbjct:    68 KDKRALKVAKRKLGTHKRAKRKRE 91

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

TAIR|locus:2181758 AT5G02450 [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 68/84 (80%), Positives = 76/84 (90%)

Query:     8 TGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVG 67
             TGLFVGLNKG++VTK+E  PR  +RKGKTSKR  F+R +I+EVAG APYEKRITELLKVG
Sbjct:     4 TGLFVGLNKGHVVTKREQPPRPNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVG 63

Query:    68 KDKRALKVAKRKLGTHKRAKKKRE 91
             KDKRALKVAKRKLGTHKRAK+KRE
Sbjct:    64 KDKRALKVAKRKLGTHKRAKRKRE 87

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|Q98TF6 RPL36 "60S ribosomal protein L36" [Gallus gallus (taxid:9031)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 54/91 (59%), Positives = 66/91 (72%)

Query:     1 MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 60
             MA + P   + VGLNKGY VTK   +PR   R+G+ +K   FVR +IREV GFAPYE+R 
Sbjct:     1 MAIRYP---MAVGLNKGYKVTKNVSKPRHCRRRGRLTKHTKFVRDMIREVCGFAPYERRA 57

Query:    61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91
              ELLKV KDKRALK  K+++GTH RAK+KRE
Sbjct:    58 MELLKVSKDKRALKFIKKRVGTHIRAKRKRE 88

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

POMBASE|SPCC970.05 rpl3601 "60S ribosomal protein L36" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 50/83 (60%), Positives = 67/83 (80%)

Query:     9 GLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGK 68
             GL VGLNKG ++TK++L  R + RKG+ SKR  FVR+++REVAGFAPYE+R+ EL++  +
Sbjct:     4 GLVVGLNKGKVLTKRQLPERPSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQ 63

Query:    69 DKRALKVAKRKLGTHKRAKKKRE 91
             DKRA K+AK++LGT KRAK K E
Sbjct:    64 DKRARKLAKKRLGTLKRAKGKIE 86

GO:0002181 "cytoplasmic translation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006412 "translation" evidence=ISO

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO

UNIPROTKB|Q9Y3U8 RPL36 "60S ribosomal protein L36" [Homo sapiens (taxid:9606)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 53/91 (58%), Positives = 67/91 (73%)

Query:     1 MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 60
             MA + P   + VGLNKG+ VTK   +PR + R+G+ +K   FVR +IREV GFAPYE+R 
Sbjct:     1 MALRYP---MAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRA 57

Query:    61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91
              ELLKV KDKRALK  K+++GTH RAK+KRE
Sbjct:    58 MELLKVSKDKRALKFIKKRVGTHIRAKRKRE 88

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0005730 "nucleolus" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F2Z5K6 RPL36 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 53/91 (58%), Positives = 67/91 (73%)

Query:     1 MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 60
             MA + P   + VGLNKG+ VTK   +PR + R+G+ +K   FVR +IREV GFAPYE+R 
Sbjct:     1 MALRYP---MAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRA 57

Query:    61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91
              ELLKV KDKRALK  K+++GTH RAK+KRE
Sbjct:    58 MELLKVSKDKRALKFIKKRVGTHIRAKRKRE 88

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|2322117 LOC100360439 "ribosomal protein L36-like" [Rattus norvegicus (taxid:10116)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 53/91 (58%), Positives = 67/91 (73%)

Query:     1 MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 60
             MA + P   + +GLNKG+ VTK   +PR + R+G+ +K   FVR +IREV GFAPYE+R 
Sbjct:     1 MALRYP---MAMGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRA 57

Query:    61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91
              ELLKV KDKRALK  K+K+GTH RAK+KRE
Sbjct:    58 MELLKVSKDKRALKFIKKKVGTHIRAKRKRE 88

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|Q3T171 RPL36 "60S ribosomal protein L36" [Bos taurus (taxid:9913)]

 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 53/91 (58%), Positives = 67/91 (73%)

Query:     1 MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 60
             MA + P   + VGLNKG+ VTK   +PR + R+G+ +K   FVR +IREV GFAPYE+R 
Sbjct:     1 MALRYP---MAVGLNKGHKVTKNVGKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYERRA 57

Query:    61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91
              ELLKV KDKRALK  K+++GTH RAK+KRE
Sbjct:    58 MELLKVSKDKRALKFIKKRVGTHIRAKRKRE 88

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

RGD|2319728 LOC100361644 "ribosomal protein L36-like" [Rattus norvegicus (taxid:10116)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 52/91 (57%), Positives = 67/91 (73%)

Query:     1 MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 60
             MA + P   + VGLNKG+ VTK   +PR + R+G+ +K   FVR +IREV GFAPY++R 
Sbjct:     1 MALRYP---MAVGLNKGHKVTKNVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPYQRRA 57

Query:    61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91
              ELLKV KDKRALK  K+++GTH RAK+KRE
Sbjct:    58 MELLKVSKDKRALKFIKKRVGTHIRAKRKRE 88

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6Q415	RL36_DANRE	No assigned EC number	0.5853	0.8367	0.7809	yes	no
Q3T171	RL36_BOVIN	No assigned EC number	0.5824	0.8979	0.8380	yes	no
Q92365	RL36A_SCHPO	No assigned EC number	0.5824	0.8775	0.8686	yes	no
Q9Y3U8	RL36_HUMAN	No assigned EC number	0.5824	0.8979	0.8380	yes	no
P39032	RL36_RAT	No assigned EC number	0.5714	0.8979	0.8380	yes	no
Q6DER2	RL36_XENTR	No assigned EC number	0.5824	0.8979	0.8380	yes	no
Q8UW19	RL36_LAPHA	No assigned EC number	0.5824	0.8979	0.8380	N/A	no
O80929	RL361_ARATH	No assigned EC number	0.8214	0.8571	0.7433	yes	no
P52866	RL36_DAUCA	No assigned EC number	0.7865	0.9081	0.8396	N/A	no
Q24F59	RL36_TETTS	No assigned EC number	0.6	0.8571	0.8076	N/A	no
Q98TF6	RL36_CHICK	No assigned EC number	0.5934	0.8979	0.8380	yes	no
Q66KU4	RL36_XENLA	No assigned EC number	0.5824	0.8979	0.8380	N/A	no
Q90YT2	RL36_ICTPU	No assigned EC number	0.5604	0.8979	0.8380	N/A	no
Q9LRB8	RL36_ENTCP	No assigned EC number	0.6951	0.8367	0.8118	N/A	no
P47964	RL36_MOUSE	No assigned EC number	0.5494	0.8979	0.8380	yes	no
Q5RAZ9	RL36_PONAB	No assigned EC number	0.5824	0.8979	0.8380	yes	no
P47834	RL36_CANAX	No assigned EC number	0.5119	0.8571	0.8484	N/A	no
O94658	RL36B_SCHPO	No assigned EC number	0.5824	0.8775	0.8686	yes	no
P49181	RL36_CAEEL	No assigned EC number	0.5421	0.8469	0.7980	yes	no
P05745	RL36A_YEAST	No assigned EC number	0.4761	0.8571	0.84	yes	no
Q55AQ9	RL36_DICDI	No assigned EC number	0.5119	0.8367	0.7809	yes	no
O14455	RL36B_YEAST	No assigned EC number	0.4761	0.8571	0.84	yes	no
Q9HFR7	RL36_TRIHM	No assigned EC number	0.5463	0.9693	0.9047	N/A	no
Q9M352	RL362_ARATH	No assigned EC number	0.7692	0.9285	0.8125	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00026857001	RecName- Full=60S ribosomal protein L36; (110 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00018552001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (155 aa)				•	•	•	•		0.997
	GSVIVG00034206001	SubName- Full=Putative uncharacterized protein (Chromosome chr9 scaffold_7, whole genome shotgu [...] (129 aa)				•	•	•	•		0.965
	GSVIVG00029522001	SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (129 aa)				•	•	•	•		0.953
	GSVIVG00031140001	SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (234 aa)				•	•	•	•		0.945
	GSVIVG00025349001	RecName- Full=60S ribosomal protein L6; (231 aa)				•	•	•	•		0.944
	GSVIVG00008857001	RecName- Full=60S ribosomal protein L6; (233 aa)				•	•	•	•		0.941
	GSVIVG00022475001	RecName- Full=60S ribosomal protein L13; (207 aa)				•	•	•	•		0.935
	GSVIVG00016616001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (107 aa)				•	•	•	•		0.935
	GSVIVG00023139001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (136 aa)				•	•	•	•		0.935
	GSVIVG00001686001	RecName- Full=60S ribosomal protein L13; (207 aa)				•	•	•	•		0.935

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	98
pfam01158	95	pfam01158, Ribosomal_L36e, Ribosomal protein L36e	1e-36
PTZ00196	98	PTZ00196, PTZ00196, 60S ribosomal protein L36; Pro	3e-30
COG5051	97	COG5051, RPL36A, Ribosomal protein L36E [Translati	1e-17

>gnl|CDD|201631 pfam01158, Ribosomal_L36e, Ribosomal protein L36e

 Score =  118 bits (299), Expect = 1e-36
 Identities = 60/83 (72%), Positives = 71/83 (85%)

Query: 9  GLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGK 68
          G+ VGLNKG+ VTK+  +PR + RKGK SKR  FVR +IREVAGFAPYEKR+ ELLKVGK
Sbjct: 1  GIAVGLNKGHKVTKRPRKPRPSRRKGKLSKRTKFVRDIIREVAGFAPYEKRVIELLKVGK 60

Query: 69 DKRALKVAKRKLGTHKRAKKKRE 91
          DKRALK AK++LGTH+RAK+KRE
Sbjct: 61 DKRALKFAKKRLGTHRRAKRKRE 83

Length = 95

>gnl|CDD|185509 PTZ00196, PTZ00196, 60S ribosomal protein L36; Provisional

 Score =  102 bits (257), Expect = 3e-30
 Identities = 57/86 (66%), Positives = 69/86 (80%)

Query: 6  PNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLK 65
          P TG+ VGLNKG+IVTK+  +P  + RKG  SKR   V+ VIREV GF+PYE+R+ ELLK
Sbjct: 1  PRTGIAVGLNKGHIVTKRARKPSPSKRKGLLSKRKRLVKDVIREVCGFSPYERRMIELLK 60

Query: 66 VGKDKRALKVAKRKLGTHKRAKKKRE 91
          VGKDKRALK AK++LGTHKRAK KR+
Sbjct: 61 VGKDKRALKYAKKRLGTHKRAKAKRD 86

Length = 98

>gnl|CDD|227384 COG5051, RPL36A, Ribosomal protein L36E [Translation, ribosomal structure and biogenesis]

 Score = 71.1 bits (174), Expect = 1e-17
 Identities = 45/84 (53%), Positives = 64/84 (76%)

Query: 8  TGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVG 67
           GL VGLNKG  VTK++   R + +KG+ SKR  FVR+++RE+AG +PYE+R+ EL++  
Sbjct: 5  PGLVVGLNKGKKVTKRQPPERPSRKKGQLSKRTEFVRSIVREIAGLSPYERRVIELIRNS 64

Query: 68 KDKRALKVAKRKLGTHKRAKKKRE 91
          +DKRA K+AK++LG+ KRAK K E
Sbjct: 65 QDKRARKLAKKRLGSLKRAKAKVE 88

Length = 97

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	98
PTZ00196	98	60S ribosomal protein L36; Provisional	100.0
PF01158	98	Ribosomal_L36e: Ribosomal protein L36e; InterPro:	100.0
KOG3452	102	consensus 60S ribosomal protein L36 [Translation,	100.0
COG5051	97	RPL36A Ribosomal protein L36E [Translation, riboso	100.0

>PTZ00196 60S ribosomal protein L36; Provisional

Probab=100.00  E-value=6.2e-53  Score=293.25  Aligned_cols=91  Identities=62%  Similarity=0.922  Sum_probs=89.2

Q ss_pred             CccceeeecCCceeccccCCCCcccccCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHHH
Q 037449            7 NTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRA   86 (98)
Q Consensus         7 ~~giavGlnKGhkvtk~~~k~r~s~~kg~~tkr~kfVr~vIrEV~GfaPYEkr~~ELlk~skdKrAlKf~KKrlGth~RA   86 (98)
                      ++||||||||||+||++.+++|||+++|.+|||++||||||+|||||||||+|+||||++|+|||||||+|+|||||+||
T Consensus         2 ~~g~avGlnKGh~vtk~~~~~r~s~rkg~~tkr~~fVr~vIrEV~GfaPYErr~mELLkv~kdKrAlKfaKkRlGth~Ra   81 (98)
T PTZ00196          2 RTGIAVGLNKGHIVTKRARKPSPSKRKGLLSKRKRLVKDVIREVCGFSPYERRMIELLKVGKDKRALKYAKKRLGTHKRA   81 (98)
T ss_pred             CCceeeecCCCcccCcCCCCCCcccccCCCCchhHHHHHHHHHHhcccHHHHHHHHHHHhcchHHHHHHHHHHhhhHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhc
Q 037449           87 KKKREIYRISF   97 (98)
Q Consensus        87 KrK~eel~~~~   97 (98)
                      |+|+|||+++.
T Consensus        82 K~Kreel~~vl   92 (98)
T PTZ00196         82 KAKRDEIQEAL   92 (98)
T ss_pred             HHHHHHHHHHH
Confidence            99999999874

>PF01158 Ribosomal_L36e: Ribosomal protein L36e; InterPro: IPR000509 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=5.9e-53  Score=293.07  Aligned_cols=92  Identities=63%  Similarity=0.910  Sum_probs=78.8

Q ss_pred             CCccceeeecCCceeccccCCCCcccccCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHH
Q 037449            6 PNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKR   85 (98)
Q Consensus         6 ~~~giavGlnKGhkvtk~~~k~r~s~~kg~~tkr~kfVr~vIrEV~GfaPYEkr~~ELlk~skdKrAlKf~KKrlGth~R   85 (98)
                      ++|||||||||||+||+|.+++|||+++|.+|+|++||||||+|||||||||+|+||||++|+||+||||+|+|||||+|
T Consensus         1 ~~~~iavGlnkGh~vtk~~~~~r~s~~kg~~tk~~kfvr~vIrEv~GfaPYEkr~mELlkv~kdKrAlKf~KKRlGth~R   80 (98)
T PF01158_consen    1 PRYGIAVGLNKGHKVTKNVSKPRPSRRKGRLTKRTKFVRDVIREVCGFAPYEKRAMELLKVSKDKRALKFAKKRLGTHIR   80 (98)
T ss_dssp             --TTSTTSSS-S-----TTS---STTS-SHHCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHH
T ss_pred             CCCceeeeCCCCcccCCCCCCCCcccccCccchhHHHHHHHHHHhcCCChHHHHHHHHHhcchhHHHHHHHHHHhhhhHH
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhc
Q 037449           86 AKKKREIYRISF   97 (98)
Q Consensus        86 AKrK~eel~~~~   97 (98)
                      ||+|+|||+++.
T Consensus        81 AKrKrEel~~vl   92 (98)
T PF01158_consen   81 AKRKREELSNVL   92 (98)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999999974

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities. The L36E ribosomal family consists of mammalian, Caenorhabditis elegans and Drosophila L36, Candida albicans L39, and yeast YL39 ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 4A1B_Q 4A1D_Q 4A19_Q 4A18_Q 3IZS_k 3IZR_k.

>KOG3452 consensus 60S ribosomal protein L36 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4e-49  Score=275.40  Aligned_cols=91  Identities=65%  Similarity=0.918  Sum_probs=89.3

Q ss_pred             CccceeeecCCceeccccCCCCcccccCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHHH
Q 037449            7 NTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRA   86 (98)
Q Consensus         7 ~~giavGlnKGhkvtk~~~k~r~s~~kg~~tkr~kfVr~vIrEV~GfaPYEkr~~ELlk~skdKrAlKf~KKrlGth~RA   86 (98)
                      .+|++|||||||++|+++++||+|+++|.+|+|++||||+|+|||||||||+|+||||++|+||||+||+|+|||||+||
T Consensus         4 ~~~~~vglnkgh~~tk~~~~pr~s~~kg~~sk~tkfvr~lirEv~G~aPyErr~meLlkvskdkrA~K~lKkRlGth~RA   83 (102)
T KOG3452|consen    4 CYGLAVGLNKGHKVTKRVSKPRQSRRKGETSKRTKFVRDLIREVAGFAPYERRAMELLKVSKDKRALKLLKKRLGTHKRA   83 (102)
T ss_pred             ccceeecccccchhhcccCCCCcCccccchhhhHHHHHHHHHHHhCCChHHHHHHHHHHHcccHHHHHHHHHHhhHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhc
Q 037449           87 KKKREIYRISF   97 (98)
Q Consensus        87 KrK~eel~~~~   97 (98)
                      |+|+|||+||.
T Consensus        84 k~KrEELsnvl   94 (102)
T KOG3452|consen   84 KRKREELSNVL   94 (102)
T ss_pred             HHHHHHHHHHH
Confidence            99999999985

>COG5051 RPL36A Ribosomal protein L36E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3.2e-35  Score=203.31  Aligned_cols=90  Identities=50%  Similarity=0.792  Sum_probs=88.3

Q ss_pred             ccceeeecCCceeccccCCCCcccccCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcchhHHHHHHHHhhhhhHHHH
Q 037449            8 TGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAK   87 (98)
Q Consensus         8 ~giavGlnKGhkvtk~~~k~r~s~~kg~~tkr~kfVr~vIrEV~GfaPYEkr~~ELlk~skdKrAlKf~KKrlGth~RAK   87 (98)
                      .|+++|||+|-+||++...+|||+++|.+|+|+.||+++++|++||+|||+++||||++|.|++|.|++|||||||+||+
T Consensus         5 ~g~~~glNkgKkvt~r~p~~rps~kkgq~s~Rt~fvrsivrEiaGlsPyErr~i~Lirns~~krArKlakKRLGs~kRAk   84 (97)
T COG5051           5 PGLVVGLNKGKKVTKRQPPERPSRKKGQLSKRTEFVRSIVREIAGLSPYERRVIELIRNSQDKRARKLAKKRLGSLKRAK   84 (97)
T ss_pred             cchhhhhcccceeeeccCCCCcchhhhccccHHHHHHHHHHHHccCCHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhc
Q 037449           88 KKREIYRISF   97 (98)
Q Consensus        88 rK~eel~~~~   97 (98)
                      .|.|||.+|.
T Consensus        85 aKvEel~~~i   94 (97)
T COG5051          85 AKVEELTSVI   94 (97)
T ss_pred             HHHHHHHHHH
Confidence            9999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	98
3izr_k	112	Localization Of The Large Subunit Ribosomal Protein		1e-39
4a18_Q	104	T.Thermophila 60s Ribosomal Subunit In Complex With		3e-19
3zf7_m	109	High-resolution Cryo-electron Microscopy Structure		9e-18
3izs_k	100	Localization Of The Large Subunit Ribosomal Protein		2e-16

>pdb|3IZR|KK Chain k, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 112

Iteration: 1
 Score =  157 bits (397), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/91 (84%), Positives = 85/91 (93%)
Query: 1  MAPKQPNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRI 60
          MAP QP +GLFVG+NKG++VTK+EL PR +DRKGK +KRVHFVR +IREVAGFAPYEKRI
Sbjct: 1  MAPSQPKSGLFVGINKGHVVTKRELPPRPSDRKGKGTKRVHFVRNLIREVAGFAPYEKRI 60
Query: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91
          TELLKVGKDKRALKVAKRKLGTHKRAKKKRE
Sbjct: 61 TELLKVGKDKRALKVAKRKLGTHKRAKKKRE 91

>pdb|4A18|Q Chain Q, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 26s Rrna And Proteins Of Molecule 1 Length = 104

Iteration: 1
 Score = 90.1 bits (222), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 54/90 (60%), Positives = 67/90 (74%), Gaps = 6/90 (6%)
Query: 9  GLFVGLNKGYIVTK--KELQPRSA-DRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLK 65
          G  VG+NKG+I T+  K+LQ  SA  RKGK  KRV  VR VIREV GFAPYEKRI EL+K
Sbjct: 4  GQAVGINKGFITTQLEKKLQKHSAVQRKGKLGKRVALVRQVIREVTGFAPYEKRIIELIK 63
Query: 66 VG--KD-KRALKVAKRKLGTHKRAKKKREI 92
           G  KD K+A K+A+++LGTH+RAK K+ +
Sbjct: 64 AGSAKDSKKATKIARKRLGTHRRAKVKKAL 93

>pdb|3ZF7|MM Chain m, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 109

Iteration: 1
 Score = 85.1 bits (209), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 59/85 (69%)
Query: 6  PNTGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLK 65
          P TG+  G NKGY  T++  +P S DR     K++  V+ +I ++ GF+P E+R+ ELL+
Sbjct: 11 PRTGIIAGFNKGYKTTRRARRPSSNDRYALPHKKLRAVKAIISDLVGFSPMERRVQELLR 70
Query: 66 VGKDKRALKVAKRKLGTHKRAKKKR 90
          VGKDKRALK  K++LG+ K AKK+R
Sbjct: 71 VGKDKRALKFCKKRLGSIKAAKKRR 95

>pdb|3IZS|KK Chain k, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 100

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/84 (47%), Positives = 59/84 (70%)
Query: 8  TGLFVGLNKGYIVTKKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVG 67
          TG+ +GLNKG  VT     P+ + +KG  S R  FVR+++RE+AG +PYE+R+ +L++  
Sbjct: 5  TGIAIGLNKGKKVTSMTPAPKISYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNS 64
Query: 68 KDKRALKVAKRKLGTHKRAKKKRE 91
           +KRA KVAK++LG+  RAK K E
Sbjct: 65 GEKRARKVAKKRLGSFTRAKAKVE 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	98
3iz5_K	206	60S ribosomal protein L13A (L13P); eukaryotic ribo	8e-29
3izc_K	199	60S ribosomal protein RPL16 (L13P); eukaryotic rib	8e-28
4a18_Q	104	RPL36, 60S ribosomal protein L36; ribosome, eukary	5e-23

>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q Length = 104

 Score = 84.3 bits (208), Expect = 5e-23
 Identities = 48/90 (53%), Positives = 61/90 (67%), Gaps = 6/90 (6%)

Query: 8  TGLFVGLNKGYIVTKKEL---QPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELL 64
           G  VG+NKG+I T+ E    +  +  RKGK  KRV  VR VIREV GFAPYEKRI EL+
Sbjct: 3  KGQAVGINKGFITTQLEKKLQKHSAVQRKGKLGKRVALVRQVIREVTGFAPYEKRIIELI 62

Query: 65 KVGK---DKRALKVAKRKLGTHKRAKKKRE 91
          K G     K+A K+A+++LGTH+RAK K+ 
Sbjct: 63 KAGSAKDSKKATKIARKRLGTHRRAKVKKA 92

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	98
3iz5_k	112	60S ribosomal protein L36 (L36E); eukaryotic ribos	100.0
3izc_k	100	60S ribosomal protein RPL36 (L36E); eukaryotic rib	100.0
4a18_Q	104	RPL36, 60S ribosomal protein L36; ribosome, eukary	100.0

>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q

Probab=100.00  E-value=5e-53  Score=295.34  Aligned_cols=91  Identities=54%  Similarity=0.845  Sum_probs=89.0

Q ss_pred             CccceeeecCCceec---cccCCCCcccccCCCCchhHHHHHHHHHhhccchhHHHHHHHHhhcc---hhHHHHHHHHhh
Q 037449            7 NTGLFVGLNKGYIVT---KKELQPRSADRKGKTSKRVHFVRTVIREVAGFAPYEKRITELLKVGK---DKRALKVAKRKL   80 (98)
Q Consensus         7 ~~giavGlnKGhkvt---k~~~k~r~s~~kg~~tkr~kfVr~vIrEV~GfaPYEkr~~ELlk~sk---dKrAlKf~KKrl   80 (98)
                      ++||||||||||+||   +|+++||||+++|.+|||++||||||+|||||||||+|+||||++|+   |||||||+|+||
T Consensus         2 ~~~iavGlnKGhkvT~~~k~~~k~r~s~rkg~ltK~tkfVrdiIrEV~GfaPYErR~mELLKvsk~~~dKRAlKf~KKRl   81 (104)
T 4a18_Q            2 AKGQAVGINKGFITTQLEKKLQKHSAVQRKGKLGKRVALVRQVIREVTGFAPYEKRIIELIKAGSAKDSKKATKIARKRL   81 (104)
T ss_dssp             CTTSTTSSSCSCCCCCCCTTTSCCCSTTCCSCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred             CCCeeeecCCCcccccccccCCCCCcccccCCCcchHHHHHHHHHHHhcCchhHHHHHHHHHcccchhhHHHHHHHHHHh
Confidence            479999999999999   99999999999999999999999999999999999999999999999   999999999999


Q ss_pred             hhhHHHHHHHHHHhhhc
Q 037449           81 GTHKRAKKKREIYRISF   97 (98)
Q Consensus        81 Gth~RAKrK~eel~~~~   97 (98)
                      |||+|||+|+|||+|+.
T Consensus        82 Gth~RAKrKreel~~vl   98 (104)
T 4a18_Q           82 GTHRRAKVKKALLEEAV   98 (104)
T ss_dssp             CSHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHH
Confidence            99999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00