Citrus Sinensis ID: 037779

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310
Protein Sequence
MADTGVVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVERYANRSD
Secondary Structure (PSIPRED)
cccccEEEEccccccccccccccHHHHHHHHHHHcccEEEEEccHHHHHHHHHHccEEEEEcccccHHHHHHccccccccHHHHHHHHHccccccEEccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHccEEEEccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHcccEEEEcccccccccHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEcccccccccccccHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHHHHHHHHcccHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccEEccccccccccccccccccccEccEEcccccHHHHHHHHHHccHEEEccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHccccEEEcccEEccccHHHHHHHHHHHHHccccHHHHHHHHccccccccccEcccccHHHHHHccc
Coil and Loop (DISEMBL)
MADTGVVTVYGngaiyettkkspfsVKVGLAQMLrggvimdvvTPEQARIAEEAGACAVMALErvpadiraqggvarmsdpqlIKQIKSSVTIPVMAKARIGHFVEAQILEAIgvdyvdesevltpadeenhinkhnfrvpfvcgcrnlGESLRRIREGAAMIRtkgeagtgNIVEAVRHVRSVMGDIrvlrnmdddevFTFAkniaapydLVMQTkqlgrlpvvhfaaggvatpaDAAMMMQLGCDgvfvgsgvfksgdpVRRARAIVQAVtnysdpdvlAEVSCglgeamvgidlndvkveryanrsd
Flexible Loop (DISEMBL)
madtgvvtvygngaiyettkkspfsVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGgvarmsdpqliKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPAdeenhinkhnfrvpfVCGCRNLGESLRRIREGAAmirtkgeagtgniveaVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQavtnysdpdvLAEVSCGLGEamvgidlndvkveryanrsd
Low Complexity Region (SEG)
MADTGVVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFaaggvatpadaaMMMQLGCDgvfvgsgvfksgDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVERYANRSD
Disordered region (IsUnstruct)
****GVVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVE*******
Disordered Region (DISOPRED)
****GVV******************VKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKV*RY*****
Disordered Region (DISEMBL)
MADTGVVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVERYANRSD
Disordered Region (DISPRO)
***TGVVTVYGNGA*****KKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVER******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADTGVVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVERYANRSD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	310	2.2.26 [Sep-21-2011]
Q39963	309	Probable pyridoxal biosyn	N/A	no	0.996	1.0	0.925	1e-167
Q8L940	309	Pyridoxal biosynthesis pr	yes	no	0.996	1.0	0.887	1e-160
Q9FT25	312	Pyridoxal biosynthesis pr	N/A	no	0.980	0.974	0.895	1e-158
O80448	309	Pyridoxal biosynthesis pr	no	no	0.996	1.0	0.864	1e-155
Q69LA6	318	Probable pyridoxal biosyn	yes	no	0.990	0.965	0.859	1e-152
Q9AT63	309	Probable pyridoxal biosyn	N/A	no	0.996	1.0	0.845	1e-151
Q8W3D0	313	Probable pyridoxal biosyn	no	no	0.987	0.977	0.847	1e-147
B8G663	293	Pyridoxal biosynthesis ly	yes	no	0.932	0.986	0.757	1e-130
B9LIK3	293	Pyridoxal biosynthesis ly	yes	no	0.932	0.986	0.757	1e-130
A9WFT9	293	Pyridoxal biosynthesis ly	yes	no	0.932	0.986	0.757	1e-130

>sp|Q39963|PDX1_HEVBR Probable pyridoxal biosynthesis protein PDX1 OS=Hevea brasiliensis GN=PDX1 PE=2 SV=1

 Score =  586 bits (1511), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 287/310 (92%), Positives = 300/310 (96%), Gaps = 1/310 (0%)

Query: 1   MADTGVVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVM 60
           MA TGVV VYGNGAI ET KKSPFSVKVGLAQMLRGGVIMDVV PEQARIAEEAGACAVM
Sbjct: 1   MAGTGVVAVYGNGAITET-KKSPFSVKVGLAQMLRGGVIMDVVNPEQARIAEEAGACAVM 59

Query: 61  ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE 120
           ALERVPADIRAQGGVARMSDPQLIK+IK SVTIPVMAKARIGHFVEAQILEAIG+DYVDE
Sbjct: 60  ALERVPADIRAQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDE 119

Query: 121 SEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRH 180
           SEVLTPADEENHINKHNFR+PFVCGCRNLGE+LRRIREGAAMIRTKGEAGTGN++EAVRH
Sbjct: 120 SEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNVIEAVRH 179

Query: 181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240
           VRSVMGDIR+LRNMDDDEVFTFAK IAAPYDLVMQTKQLGRLPVV FAAGGVATPADAA+
Sbjct: 180 VRSVMGDIRLLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAAL 239

Query: 241 MMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDV 300
           MMQLGCDGVFVGSGVFKSGDP RRARAIVQAVT+YSDPD+LAEVSCGLGEAMVGI+LND 
Sbjct: 240 MMQLGCDGVFVGSGVFKSGDPARRARAIVQAVTHYSDPDMLAEVSCGLGEAMVGINLNDK 299

Query: 301 KVERYANRSD 310
           KVER+ANRS+
Sbjct: 300 KVERFANRSE 309

Involved in the production of pyridoxal (vitamin B6) and indirect resistance to singlet oxygen-generating photosensitizers.
Hevea brasiliensis (taxid: 3981)

>sp|Q8L940|PDX13_ARATH Pyridoxal biosynthesis protein PDX1.3 OS=Arabidopsis thaliana GN=PDX13 PE=1 SV=2

 Score =  563 bits (1451), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 275/310 (88%), Positives = 294/310 (94%), Gaps = 1/310 (0%)

Query: 1   MADTGVVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVM 60
           M  TGVV VYGNGAI E  KKSPFSVKVGLAQMLRGGVIMDVV  EQARIAEEAGACAVM
Sbjct: 1   MEGTGVVAVYGNGAITEA-KKSPFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAVM 59

Query: 61  ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE 120
           ALERVPADIRAQGGVARMSDPQ+IK+IK +VTIPVMAKARIGHFVEAQILEAIG+DY+DE
Sbjct: 60  ALERVPADIRAQGGVARMSDPQMIKEIKQAVTIPVMAKARIGHFVEAQILEAIGIDYIDE 119

Query: 121 SEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRH 180
           SEVLT ADE++HINKHNFR+PFVCGCRNLGE+LRRIREGAAMIRTKGEAGTGNI+EAVRH
Sbjct: 120 SEVLTLADEDHHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRH 179

Query: 181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240
           VRSV GDIRVLRNMDDDEVFTFAK +AAPYDLVMQTKQLGRLPVV FAAGGVATPADAA+
Sbjct: 180 VRSVNGDIRVLRNMDDDEVFTFAKKLAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAAL 239

Query: 241 MMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDV 300
           MMQLGCDGVFVGSG+FKSGDP RRARAIVQAVT+YSDP++L EVSCGLGEAMVGI+LND 
Sbjct: 240 MMQLGCDGVFVGSGIFKSGDPARRARAIVQAVTHYSDPEMLVEVSCGLGEAMVGINLNDE 299

Query: 301 KVERYANRSD 310
           KVER+ANRS+
Sbjct: 300 KVERFANRSE 309

Involved in the production of pyridoxal (vitamin B6). Also plays an indirect role in osmotic or salt tolerance, and in resistance to singlet oxygen-generating photosensitizers.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FT25|PDX1_PHAVU Pyridoxal biosynthesis protein PDX1 OS=Phaseolus vulgaris GN=PDX1 PE=2 SV=1

 Score =  558 bits (1437), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 274/306 (89%), Positives = 293/306 (95%), Gaps = 2/306 (0%)

Query: 6   VVTVY-GNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALER 64
           VV +Y GNGAI ET KKSPFSVKVGLAQMLRGGVIMDVV  +QARIAEEAGACAVMALER
Sbjct: 8   VVALYDGNGAITET-KKSPFSVKVGLAQMLRGGVIMDVVNADQARIAEEAGACAVMALER 66

Query: 65  VPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVL 124
           VPADIRAQGGVARMSDPQLIK+IK +VTIPVMAKARIGHFVEAQILEAIG+DYVDESEVL
Sbjct: 67  VPADIRAQGGVARMSDPQLIKEIKRAVTIPVMAKARIGHFVEAQILEAIGIDYVDESEVL 126

Query: 125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSV 184
           T AD+ NHINKHNFR+PFVCGCRNLGE+LRRIREGAAMIRTKGEAGTGNI+EAVRHVRSV
Sbjct: 127 TLADDANHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRSV 186

Query: 185 MGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL 244
           M DIRVLRNMDDDEVFTFAK+IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAA+MMQL
Sbjct: 187 MSDIRVLRNMDDDEVFTFAKSIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAALMMQL 246

Query: 245 GCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVER 304
           GCDGVFVGSGVFKSGDP +RARAIVQAVT+YSDP++LAEVSCGLGEAMVGI+L+D  VER
Sbjct: 247 GCDGVFVGSGVFKSGDPAKRARAIVQAVTHYSDPEILAEVSCGLGEAMVGINLSDTNVER 306

Query: 305 YANRSD 310
           +ANRS+
Sbjct: 307 FANRSE 312

Involved in the production of pyridoxal (vitamin B6) and indirect resistance to singlet oxygen-generating photosensitizers.

Phaseolus vulgaris (taxid: 3885)

>sp|O80448|PDX11_ARATH Pyridoxal biosynthesis protein PDX1.1 OS=Arabidopsis thaliana GN=PDX11 PE=1 SV=1

 Score =  548 bits (1413), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 268/310 (86%), Positives = 294/310 (94%), Gaps = 1/310 (0%)

Query: 1   MADTGVVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVM 60
           MA TGVV VYG GA+ ET +KSPFSVKVGLAQMLRGGVIMDVV  EQARIAEEAGACAVM
Sbjct: 1   MAGTGVVAVYGEGAMTETKQKSPFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAVM 60

Query: 61  ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE 120
           ALERVPADIRAQGGVARMSDP++IK+IK++VTIPVMAKARIGHFVEAQILEAIGVDYVDE
Sbjct: 61  ALERVPADIRAQGGVARMSDPEMIKEIKNAVTIPVMAKARIGHFVEAQILEAIGVDYVDE 120

Query: 121 SEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRH 180
           SEVLT ADE+NHINKHNF++PFVCGCRNLGE+LRRIREGAAMIRTKGEAGTGN+VEAVRH
Sbjct: 121 SEVLTLADEDNHINKHNFKIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNVVEAVRH 180

Query: 181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240
           VRSV G IR+LR+MDDDEVFT+AK IAAPYDLV+QTK+LGRLPVV FAAGGVATPADAA+
Sbjct: 181 VRSVNGAIRLLRSMDDDEVFTYAKKIAAPYDLVVQTKELGRLPVVQFAAGGVATPADAAL 240

Query: 241 MMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDV 300
           MMQLGCDGVFVGSGVFKSGDPV+RA+AIVQAVTNY D  VLAEVSCGLGEAMVG++L+D 
Sbjct: 241 MMQLGCDGVFVGSGVFKSGDPVKRAKAIVQAVTNYRDAAVLAEVSCGLGEAMVGLNLDD- 299

Query: 301 KVERYANRSD 310
           KVER+A+RS+
Sbjct: 300 KVERFASRSE 309

Involved in the production of pyridoxal (vitamin B6) and indirect resistance to singlet oxygen-generating photosensitizers.

Arabidopsis thaliana (taxid: 3702)

>sp|Q69LA6|PDX11_ORYSJ Probable pyridoxal biosynthesis protein PDX1.1 OS=Oryza sativa subsp. japonica GN=PDX11 PE=2 SV=1

 Score =  539 bits (1388), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 269/313 (85%), Positives = 290/313 (92%), Gaps = 6/313 (1%)

Query: 4   TGVVTVYGNG----AIYETT--KKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGAC 57
           TGVVTVYG+G    A+ E +  K + FSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGAC
Sbjct: 6   TGVVTVYGSGTNGAALLEPSNHKSATFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGAC 65

Query: 58  AVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDY 117
           AVMALERVPADIRAQGGVARMSDP LI+ IK +VTIPVMAKARIGHFVEAQILEAIGVDY
Sbjct: 66  AVMALERVPADIRAQGGVARMSDPGLIRDIKRAVTIPVMAKARIGHFVEAQILEAIGVDY 125

Query: 118 VDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEA 177
           VDESEVLT AD+ +HINKHNFRVPFVCGCR+LGE+LRRIREGAAMIRTKGEAGTGN+VEA
Sbjct: 126 VDESEVLTLADDAHHINKHNFRVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGNVVEA 185

Query: 178 VRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPAD 237
           VRHVRSVMGDIR LRNMDDDEVF++AK IAAPYDLVMQTKQLGRLPVV FAAGGVATPAD
Sbjct: 186 VRHVRSVMGDIRALRNMDDDEVFSYAKRIAAPYDLVMQTKQLGRLPVVQFAAGGVATPAD 245

Query: 238 AAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDL 297
           AA+MMQLGCDGVFVGSG+FKSGDP RRARAIVQAVT+YSDP +LAEVS GLGEAMVGI+L
Sbjct: 246 AALMMQLGCDGVFVGSGIFKSGDPARRARAIVQAVTHYSDPKILAEVSSGLGEAMVGINL 305

Query: 298 NDVKVERYANRSD 310
           +D KVER+A RS+
Sbjct: 306 SDPKVERFAARSE 318

Involved in the production of pyridoxal (vitamin B6) and indirect resistance to singlet oxygen-generating photosensitizers.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9AT63|PDX1_GINBI Probable pyridoxal biosynthesis protein PDX1 OS=Ginkgo biloba GN=PDX1 PE=2 SV=1

 Score =  535 bits (1377), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 262/310 (84%), Positives = 288/310 (92%), Gaps = 1/310 (0%)

Query: 1   MADTGVVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVM 60
           MA  GVVTVYG+GAI +T K S ++VKVGLAQMLRGGVIMDVV  EQARIAEEAGA AVM
Sbjct: 1   MASDGVVTVYGDGAITDT-KVSSYAVKVGLAQMLRGGVIMDVVNAEQARIAEEAGATAVM 59

Query: 61  ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE 120
           ALERVPADIRAQGGVARMSDP LIK+IKS+VTIPVMAKARIGHFVEAQILEAIG+DY+DE
Sbjct: 60  ALERVPADIRAQGGVARMSDPGLIKEIKSAVTIPVMAKARIGHFVEAQILEAIGIDYIDE 119

Query: 121 SEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRH 180
           SEVLTPAD+ +HINKHNFR+PFVCGCRNLGE+LRRI EGAAMIRTKGEAGTGN++EAVRH
Sbjct: 120 SEVLTPADDXHHINKHNFRIPFVCGCRNLGEALRRIAEGAAMIRTKGEAGTGNVIEAVRH 179

Query: 181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240
           VRSV+GDIR L+++DDDEVF FAK IAAPY+LV QTKQLGRLPVV+FAAGGVATPADAA+
Sbjct: 180 VRSVLGDIRKLQSLDDDEVFAFAKQIAAPYELVRQTKQLGRLPVVNFAAGGVATPADAAL 239

Query: 241 MMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDV 300
           MMQLGCDGVFVGSGVFKSGDP RRARAIVQAVT+Y+DP +LAEVSC LGEAMVGI+L D 
Sbjct: 240 MMQLGCDGVFVGSGVFKSGDPARRARAIVQAVTHYNDPHILAEVSCSLGEAMVGINLKDE 299

Query: 301 KVERYANRSD 310
           KVERYA RS+
Sbjct: 300 KVERYAERSE 309

Involved in the production of pyridoxal (vitamin B6) and indirect resistance to singlet oxygen-generating photosensitizers.

Ginkgo biloba (taxid: 3311)

>sp|Q8W3D0|PDX12_ORYSJ Probable pyridoxal biosynthesis protein PDX1.2 OS=Oryza sativa subsp. japonica GN=PDX12 PE=2 SV=1

 Score =  520 bits (1340), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 262/309 (84%), Positives = 282/309 (91%), Gaps = 3/309 (0%)

Query: 4   TGVVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALE 63
           T VV +YG GA   + K   FSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALE
Sbjct: 6   TDVVALYG-GANGLSHKSGSFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALE 64

Query: 64  RVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEV 123
           RVPADIRAQGGVARMSDP LI+ IK SVTIPVMAKARIGH VEAQILEAIGVDYVDESEV
Sbjct: 65  RVPADIRAQGGVARMSDPGLIRDIKRSVTIPVMAKARIGHLVEAQILEAIGVDYVDESEV 124

Query: 124 LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRS 183
           LT AD+ +HINK+NFRVPFVCGCR+LGE+LRRIREGAAMIRTKGEAGTGN+VEAVRHVRS
Sbjct: 125 LTLADDAHHINKNNFRVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGNVVEAVRHVRS 184

Query: 184 VMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ 243
           VMGDIR LR+MDDDEVF++AK IAAPYDLVMQTKQLGRLPVV FAAGGVATPADAA+MMQ
Sbjct: 185 VMGDIRALRSMDDDEVFSYAKRIAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAALMMQ 244

Query: 244 LGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLND--VK 301
           LGCDGVFVGSG+FKSGDP  RARAIVQAVT+YSDP +LAEVS GLGEAMVGI+L+D  + 
Sbjct: 245 LGCDGVFVGSGIFKSGDPALRARAIVQAVTHYSDPKILAEVSSGLGEAMVGINLSDPKIH 304

Query: 302 VERYANRSD 310
           VER+A RSD
Sbjct: 305 VERFAARSD 313

Involved in the production of pyridoxal (vitamin B6) and indirect resistance to singlet oxygen-generating photosensitizers.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|B8G663|PDXS_CHLAD Pyridoxal biosynthesis lyase PdxS OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=pdxS PE=3 SV=1

 Score =  466 bits (1198), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 219/289 (75%), Positives = 261/289 (90%)

Query: 20  KKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMS 79
           +KS ++ KVGLAQML+GGVIMDVVTPEQARIAEEAGA AVMALERVPADIRAQGGVARMS
Sbjct: 2   EKSTWTTKVGLAQMLKGGVIMDVVTPEQARIAEEAGAVAVMALERVPADIRAQGGVARMS 61

Query: 80  DPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFR 139
           DP+LI  IK +VTIPVMAKARIGHFVEAQ+LEAIGVDY+DESEVLTPADEE+HINKH FR
Sbjct: 62  DPELILAIKQAVTIPVMAKARIGHFVEAQVLEAIGVDYIDESEVLTPADEEHHINKHKFR 121

Query: 140 VPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEV 199
           VPFVCGCRNLGE+LRRI EGAAM+RTKGEAGTGN+VEAVRH R+V  +IR L++M++DE+
Sbjct: 122 VPFVCGCRNLGEALRRIAEGAAMLRTKGEAGTGNVVEAVRHARAVYSEIRRLQSMNEDEL 181

Query: 200 FTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259
           FT+AK I APY+LV Q    G+LPVV+FAAGG+ATPADAA++MQLG DG+FVGSG+FKSG
Sbjct: 182 FTYAKQIQAPYELVKQVATEGKLPVVNFAAGGIATPADAALLMQLGVDGIFVGSGIFKSG 241

Query: 260 DPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVERYANR 308
           +P++RARAIV+A T+Y+DP+++AEVS GLGEAMVGI+++ +  E+   R
Sbjct: 242 NPIKRARAIVEATTHYNDPEIIAEVSKGLGEAMVGINIDQIPAEQLMAR 290

Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring.

Chloroflexus aggregans (strain MD-66 / DSM 9485) (taxid: 326427)

EC: 4

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|B9LIK3|PDXS_CHLSY Pyridoxal biosynthesis lyase PdxS OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=pdxS PE=3 SV=1

 Score =  465 bits (1197), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 219/289 (75%), Positives = 261/289 (90%)

Query: 20  KKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMS 79
           +KS ++ KVGLAQML+GGVIMDVVTPEQARIAEEAGA AVMALERVPADIRAQGGVARMS
Sbjct: 2   EKSTWTTKVGLAQMLKGGVIMDVVTPEQARIAEEAGAVAVMALERVPADIRAQGGVARMS 61

Query: 80  DPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFR 139
           DP+LI  IK +VTIPVMAKARIGHFVEAQ+LEAIGVDY+DESEVLTPADEE+HINKH FR
Sbjct: 62  DPELILAIKQAVTIPVMAKARIGHFVEAQVLEAIGVDYIDESEVLTPADEEHHINKHKFR 121

Query: 140 VPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEV 199
           VPFVCGCRNLGE+LRR+ EGAAM+RTKGEAGTGN+VEAVRH R+V  +IR L++M++DE+
Sbjct: 122 VPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHARAVYSEIRRLQSMNEDEL 181

Query: 200 FTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259
           FT+AK I APY+LV Q    G+LPVV+FAAGG+ATPADAA++MQLG DG+FVGSG+FKSG
Sbjct: 182 FTYAKQIQAPYELVKQVATEGKLPVVNFAAGGIATPADAALLMQLGVDGIFVGSGIFKSG 241

Query: 260 DPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVERYANR 308
           DPV+RARAIV+A T+Y+DP+++AEVS GLGEAMVGI+++ +  ++   R
Sbjct: 242 DPVKRARAIVEATTHYNDPEIIAEVSKGLGEAMVGINIDQIPADQLMAR 290

Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring.

Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) (taxid: 480224)

EC: 4

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|A9WFT9|PDXS_CHLAA Pyridoxal biosynthesis lyase PdxS OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=pdxS PE=3 SV=1

 Score =  465 bits (1197), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 219/289 (75%), Positives = 261/289 (90%)

Query: 20  KKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMS 79
           +KS ++ KVGLAQML+GGVIMDVVTPEQARIAEEAGA AVMALERVPADIRAQGGVARMS
Sbjct: 2   EKSTWTTKVGLAQMLKGGVIMDVVTPEQARIAEEAGAVAVMALERVPADIRAQGGVARMS 61

Query: 80  DPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFR 139
           DP+LI  IK +VTIPVMAKARIGHFVEAQ+LEAIGVDY+DESEVLTPADEE+HINKH FR
Sbjct: 62  DPELILAIKQAVTIPVMAKARIGHFVEAQVLEAIGVDYIDESEVLTPADEEHHINKHKFR 121

Query: 140 VPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEV 199
           VPFVCGCRNLGE+LRR+ EGAAM+RTKGEAGTGN+VEAVRH R+V  +IR L++M++DE+
Sbjct: 122 VPFVCGCRNLGEALRRVAEGAAMLRTKGEAGTGNVVEAVRHARAVYSEIRRLQSMNEDEL 181

Query: 200 FTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259
           FT+AK I APY+LV Q    G+LPVV+FAAGG+ATPADAA++MQLG DG+FVGSG+FKSG
Sbjct: 182 FTYAKQIQAPYELVKQVATEGKLPVVNFAAGGIATPADAALLMQLGVDGIFVGSGIFKSG 241

Query: 260 DPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVERYANR 308
           DPV+RARAIV+A T+Y+DP+++AEVS GLGEAMVGI+++ +  ++   R
Sbjct: 242 DPVKRARAIVEATTHYNDPEIIAEVSKGLGEAMVGINIDQIPADQLMAR 290

Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring.

Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) (taxid: 324602)

EC: 4

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
2501578	309	RecName: Full=Probable pyridoxal biosynt	0.996	1.0	0.925	1e-165
224139104	309	predicted protein [Populus trichocarpa]	0.996	1.0	0.916	1e-164
255569365	327	Pyridoxin biosynthesis protein PDX1, put	0.980	0.929	0.927	1e-164
225434584	309	PREDICTED: probable pyridoxal biosynthes	0.996	1.0	0.916	1e-163
224087752	309	predicted protein [Populus trichocarpa]	0.996	1.0	0.906	1e-161
46399269	309	putative pyridoxine biosynthesis protein	0.996	1.0	0.893	1e-161
72256517	310	pyridoxine biosynthesis protein [Lotus j	1.0	1.0	0.896	1e-161
356549200	311	PREDICTED: pyridoxal biosynthesis protei	0.987	0.983	0.912	1e-160
351723277	311	pyridoxine biosynthesis protein [Glycine	0.987	0.983	0.908	1e-160
395146546	801	hypothetical protein [Linum usitatissimu	0.980	0.379	0.904	1e-159

>gi|2501578|sp|Q39963.1|PDX1_HEVBR RecName: Full=Probable pyridoxal biosynthesis protein PDX1; AltName: Full=Ethylene-inducible protein HEVER gi|1209317|gb|AAA91063.1| ethylene-inducible protein [Hevea brasiliensis]

 Score =  586 bits (1511), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 287/310 (92%), Positives = 300/310 (96%), Gaps = 1/310 (0%)

Query: 1   MADTGVVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVM 60
           MA TGVV VYGNGAI ET KKSPFSVKVGLAQMLRGGVIMDVV PEQARIAEEAGACAVM
Sbjct: 1   MAGTGVVAVYGNGAITET-KKSPFSVKVGLAQMLRGGVIMDVVNPEQARIAEEAGACAVM 59

Query: 61  ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE 120
           ALERVPADIRAQGGVARMSDPQLIK+IK SVTIPVMAKARIGHFVEAQILEAIG+DYVDE
Sbjct: 60  ALERVPADIRAQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEAIGIDYVDE 119

Query: 121 SEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRH 180
           SEVLTPADEENHINKHNFR+PFVCGCRNLGE+LRRIREGAAMIRTKGEAGTGN++EAVRH
Sbjct: 120 SEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNVIEAVRH 179

Query: 181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240
           VRSVMGDIR+LRNMDDDEVFTFAK IAAPYDLVMQTKQLGRLPVV FAAGGVATPADAA+
Sbjct: 180 VRSVMGDIRLLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAAL 239

Query: 241 MMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDV 300
           MMQLGCDGVFVGSGVFKSGDP RRARAIVQAVT+YSDPD+LAEVSCGLGEAMVGI+LND 
Sbjct: 240 MMQLGCDGVFVGSGVFKSGDPARRARAIVQAVTHYSDPDMLAEVSCGLGEAMVGINLNDK 299

Query: 301 KVERYANRSD 310
           KVER+ANRS+
Sbjct: 300 KVERFANRSE 309

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139104|ref|XP_002322981.1| predicted protein [Populus trichocarpa] gi|222867611|gb|EEF04742.1| predicted protein [Populus trichocarpa]

 Score =  583 bits (1504), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 284/310 (91%), Positives = 300/310 (96%), Gaps = 1/310 (0%)

Query: 1   MADTGVVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVM 60
           MA TGVV VYGNGAI ET KKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVM
Sbjct: 1   MAGTGVVAVYGNGAITET-KKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVM 59

Query: 61  ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE 120
           ALERVPADIRAQGGVARMSDPQLIK+IK +VTIPVMAKARIGHFVEAQILEAIG+DY+DE
Sbjct: 60  ALERVPADIRAQGGVARMSDPQLIKEIKQAVTIPVMAKARIGHFVEAQILEAIGIDYIDE 119

Query: 121 SEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRH 180
           SEVLTPADEENHINKHNFR+PFVCGCRNLGE+LRRIREGAAMIRTKGEAGTGN++EAVRH
Sbjct: 120 SEVLTPADEENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNVIEAVRH 179

Query: 181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240
           VRSVMGDIRVLRNMDDDEVFTFAK IAAPYDLVMQTKQLGRLPVV FAAGGVATPADAA+
Sbjct: 180 VRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAAL 239

Query: 241 MMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDV 300
           MMQLGCDGVFVGSGVFKSGDPV+R RAIVQAVT+YSDP VLAEVSCGLGEAMVG++LND 
Sbjct: 240 MMQLGCDGVFVGSGVFKSGDPVKRGRAIVQAVTHYSDPQVLAEVSCGLGEAMVGLNLNDK 299

Query: 301 KVERYANRSD 310
           K+ER+A+RSD
Sbjct: 300 KIERFASRSD 309

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569365|ref|XP_002525650.1| Pyridoxin biosynthesis protein PDX1, putative [Ricinus communis] gi|223535086|gb|EEF36768.1| Pyridoxin biosynthesis protein PDX1, putative [Ricinus communis]

 Score =  582 bits (1500), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 282/304 (92%), Positives = 296/304 (97%)

Query: 1   MADTGVVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVM 60
           MADTGVVTVYGNGA+YETTKKSPFSVKVGLAQMLRGGVIMDVV  EQARIAEEAGACAVM
Sbjct: 1   MADTGVVTVYGNGALYETTKKSPFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAVM 60

Query: 61  ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE 120
           ALERVPADIRAQGGVARMSDPQLIK+IK +VTIPVMAKARIGHFVEAQILEA+G+DY+DE
Sbjct: 61  ALERVPADIRAQGGVARMSDPQLIKEIKQAVTIPVMAKARIGHFVEAQILEAVGIDYIDE 120

Query: 121 SEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRH 180
           SEVLT ADE+NHINKHNFR+PFVCGCRNLGE+LRRIREGAAMIRTKGEAGTGNI+EAVRH
Sbjct: 121 SEVLTVADEDNHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRH 180

Query: 181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240
           VRSVMGDIRVLRNMDDDEVFTFAK IAAPYDLVMQTKQLGRLPVV FAAGGVATPADAA+
Sbjct: 181 VRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAAL 240

Query: 241 MMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDV 300
           MMQLGCDGVFVGSGVFKSGDP RRARAIVQAVT+Y+DP VLAEVSCGLGEAMVGI+LNDV
Sbjct: 241 MMQLGCDGVFVGSGVFKSGDPARRARAIVQAVTHYTDPHVLAEVSCGLGEAMVGINLNDV 300

Query: 301 KVER 304
           KVER
Sbjct: 301 KVER 304

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434584|ref|XP_002278391.1| PREDICTED: probable pyridoxal biosynthesis protein PDX1-like [Vitis vinifera]

 Score =  578 bits (1491), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 284/310 (91%), Positives = 299/310 (96%), Gaps = 1/310 (0%)

Query: 1   MADTGVVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVM 60
           MA +GVVTVYGNGAI ET KKSPFSVKVGLAQMLRGGVIMDVV  EQARIAEEAGACAVM
Sbjct: 1   MAGSGVVTVYGNGAITET-KKSPFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAVM 59

Query: 61  ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE 120
           ALERVPADIRAQGGVARMSDP LIK+IK +VTIPVMAKARIGHFVEAQILEAIG+DYVDE
Sbjct: 60  ALERVPADIRAQGGVARMSDPSLIKEIKQAVTIPVMAKARIGHFVEAQILEAIGIDYVDE 119

Query: 121 SEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRH 180
           SEVLT ADE+NHINKHNFR+PFVCGCRNLGE+LRRIREGAAMIRTKGEAGTGNIVEAVRH
Sbjct: 120 SEVLTVADEDNHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIVEAVRH 179

Query: 181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240
           VRSVMG+IRVLRNMDDDEVFT+AK ++APYDLVMQTKQLGRLPVVHFAAGGVATPADAA+
Sbjct: 180 VRSVMGEIRVLRNMDDDEVFTYAKKLSAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAL 239

Query: 241 MMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDV 300
           MMQLGCDGVFVGSGVFKSGDP RRARAIVQAVT+YSDPDVLAEVSCGLGEAMVGI+LND 
Sbjct: 240 MMQLGCDGVFVGSGVFKSGDPARRARAIVQAVTHYSDPDVLAEVSCGLGEAMVGINLNDD 299

Query: 301 KVERYANRSD 310
           KVERYANRS+
Sbjct: 300 KVERYANRSE 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087752|ref|XP_002308219.1| predicted protein [Populus trichocarpa] gi|222854195|gb|EEE91742.1| predicted protein [Populus trichocarpa]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 281/310 (90%), Positives = 298/310 (96%), Gaps = 1/310 (0%)

Query: 1   MADTGVVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVM 60
           MA TGVV VYGNG I ET KKSPFSVKVGLAQMLRGGVIMDVVT EQARIAEEAGACAVM
Sbjct: 1   MAGTGVVAVYGNGTITET-KKSPFSVKVGLAQMLRGGVIMDVVTAEQARIAEEAGACAVM 59

Query: 61  ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE 120
           ALERVPADIRAQGGVARMSDPQLIK+IK +VTIPVMAKARIGHFVEAQILEAIGVDYVDE
Sbjct: 60  ALERVPADIRAQGGVARMSDPQLIKEIKQAVTIPVMAKARIGHFVEAQILEAIGVDYVDE 119

Query: 121 SEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRH 180
           SEVLT ADE+NHINKHNFR+PFVCGCRNLGE+LRRIREGAAMIRTKGEAGTGN++EAVRH
Sbjct: 120 SEVLTLADEDNHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNVIEAVRH 179

Query: 181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240
           VRSVMGDIR+LRNMDDDEVFTFAK IAAPYDLVMQTKQLGRLPVV FAAGGVATPADAA+
Sbjct: 180 VRSVMGDIRMLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAAL 239

Query: 241 MMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDV 300
           MMQLGCDGVFVGSGVFKSGDPV+R RAIVQAVT+YSDP++LAEVSCGLGEAMVG++LND 
Sbjct: 240 MMQLGCDGVFVGSGVFKSGDPVKRGRAIVQAVTHYSDPELLAEVSCGLGEAMVGLNLNDK 299

Query: 301 KVERYANRSD 310
           KVER+A+RSD
Sbjct: 300 KVERFASRSD 309

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|46399269|gb|AAS92255.1| putative pyridoxine biosynthesis protein isoform A [Nicotiana tabacum] gi|46399271|gb|AAS92256.1| putative pyridoxine biosynthesis protein isoform B [Nicotiana tabacum]

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 277/310 (89%), Positives = 298/310 (96%), Gaps = 1/310 (0%)

Query: 1   MADTGVVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVM 60
           MA +GVVT+YGNGA+ ETTK+SPFSVKVGLAQMLRGGVIMDVV  EQARIAEEAGACAVM
Sbjct: 1   MAGSGVVTLYGNGALTETTKQSPFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAVM 60

Query: 61  ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE 120
           ALERVPADIRAQGGVARMSDPQLIK+IK +VTIPVMAKARIGHFVEAQILEAIG+DYVDE
Sbjct: 61  ALERVPADIRAQGGVARMSDPQLIKEIKQAVTIPVMAKARIGHFVEAQILEAIGIDYVDE 120

Query: 121 SEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRH 180
           SEVLT AD+ENHINKHNFR+PFVCGCRNLGE+LRRIREGAAMIRTKGEAGTGNI+EAVRH
Sbjct: 121 SEVLTLADDENHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRH 180

Query: 181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240
           VRSVMGDIRVLRNMDDDEVFTFAK + APYDLVMQTKQLGRLPVVHFAAGGVATPADAA+
Sbjct: 181 VRSVMGDIRVLRNMDDDEVFTFAKKLQAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAL 240

Query: 241 MMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDV 300
           MMQLGCDGVFVGSG+FKSGDP +R RAIVQAVT+YSDP +LAE+SCGLGEAMVGI+L+D 
Sbjct: 241 MMQLGCDGVFVGSGIFKSGDPAKRGRAIVQAVTHYSDPGLLAEISCGLGEAMVGINLDD- 299

Query: 301 KVERYANRSD 310
           KVERYANRS+
Sbjct: 300 KVERYANRSE 309

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|72256517|gb|AAZ67141.1| pyridoxine biosynthesis protein [Lotus japonicus]

 Score =  572 bits (1475), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 278/310 (89%), Positives = 295/310 (95%)

Query: 1   MADTGVVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVM 60
           M  +GVVTVYGNGA    TKKSPFSVKVGLAQMLRGGVIMDVV  +QARIAEEAGACAVM
Sbjct: 1   MEGSGVVTVYGNGAAITETKKSPFSVKVGLAQMLRGGVIMDVVNAQQARIAEEAGACAVM 60

Query: 61  ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE 120
           ALERVPADIRAQGGVARMSDPQLIK+IK +VTIPVMAKARIGHFVEAQILEAIGVDYVDE
Sbjct: 61  ALERVPADIRAQGGVARMSDPQLIKEIKQAVTIPVMAKARIGHFVEAQILEAIGVDYVDE 120

Query: 121 SEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRH 180
           SEVLT ADE+NHINKHNFR+PFVCGCRNLGE+LRR+REGAAMIRTKGEAGTGNIVEAVRH
Sbjct: 121 SEVLTLADEDNHINKHNFRIPFVCGCRNLGEALRRVREGAAMIRTKGEAGTGNIVEAVRH 180

Query: 181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM 240
           VRSVMGDIRVLRNMDDDEVFTFAK IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAA+
Sbjct: 181 VRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAL 240

Query: 241 MMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDV 300
           MMQLGCDGVFVGSGVFKSGDP +RARAIVQAVT+YSDP +LAE+SCGLGEAMVG++LND 
Sbjct: 241 MMQLGCDGVFVGSGVFKSGDPAKRARAIVQAVTHYSDPGLLAEISCGLGEAMVGLNLNDS 300

Query: 301 KVERYANRSD 310
            VER+ANRS+
Sbjct: 301 NVERFANRSE 310

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549200|ref|XP_003542985.1| PREDICTED: pyridoxal biosynthesis protein PDX1-like [Glycine max]

 Score =  570 bits (1469), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 280/307 (91%), Positives = 295/307 (96%), Gaps = 1/307 (0%)

Query: 4   TGVVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALE 63
           +GVVTVYGNGAI ET KKSPFSVKVGLAQMLRGGVIMDVV  EQARIAEEAGACAVMALE
Sbjct: 6   SGVVTVYGNGAITET-KKSPFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAVMALE 64

Query: 64  RVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEV 123
           RVPADIRAQGGVARMSDPQLIK IK +VTIPVMAKARIGHFVEAQILEAIG+DYVDESEV
Sbjct: 65  RVPADIRAQGGVARMSDPQLIKDIKRAVTIPVMAKARIGHFVEAQILEAIGIDYVDESEV 124

Query: 124 LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRS 183
           LT AD+ NHINKHNFR+PFVCGCRNLGE+LRRIREGAAMIRTKGEAGTGNI+EAVRHVRS
Sbjct: 125 LTLADDANHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRS 184

Query: 184 VMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ 243
           VM DIRVLRNMDDDEVFTFAK+IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAA+MMQ
Sbjct: 185 VMSDIRVLRNMDDDEVFTFAKSIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAALMMQ 244

Query: 244 LGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVE 303
           LGCDGVFVGSGVFKSGDP +RARAIVQAVT+YSDP+VLAEVSCGLGEAMVGI+L D KVE
Sbjct: 245 LGCDGVFVGSGVFKSGDPAKRARAIVQAVTHYSDPEVLAEVSCGLGEAMVGINLTDDKVE 304

Query: 304 RYANRSD 310
           R+ANRS+
Sbjct: 305 RFANRSE 311

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723277|ref|NP_001238041.1| pyridoxine biosynthesis protein [Glycine max] gi|72256519|gb|AAZ67142.1| pyridoxine biosynthesis protein [Glycine max]

 Score =  568 bits (1465), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 279/307 (90%), Positives = 294/307 (95%), Gaps = 1/307 (0%)

Query: 4   TGVVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALE 63
           +GVVTVYGNGAI ET KKSPFSVKVGLAQMLRGGVIMDVV  EQARIAEEAGACAVMALE
Sbjct: 6   SGVVTVYGNGAITET-KKSPFSVKVGLAQMLRGGVIMDVVDAEQARIAEEAGACAVMALE 64

Query: 64  RVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEV 123
           RVPADIRAQGGVARMSDPQLI  IK +VTIPVMAKARIGHFVEAQILEAIG+DYVDESEV
Sbjct: 65  RVPADIRAQGGVARMSDPQLINDIKRAVTIPVMAKARIGHFVEAQILEAIGIDYVDESEV 124

Query: 124 LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRS 183
           LT AD+ NHINKHNFR+PFVCGCRNLGE+LRRIREGAAMIRTKGEAGTGNI+EAVRHVRS
Sbjct: 125 LTLADDANHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRHVRS 184

Query: 184 VMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ 243
           VM DIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAA+MMQ
Sbjct: 185 VMSDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAALMMQ 244

Query: 244 LGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVE 303
           LGCDGVFVGSGVFKSGDP +RARAIVQAVT+YSDP++LAEVSCGLGEAMVGI+L D KVE
Sbjct: 245 LGCDGVFVGSGVFKSGDPAKRARAIVQAVTHYSDPEILAEVSCGLGEAMVGINLTDDKVE 304

Query: 304 RYANRSD 310
           R+ANRS+
Sbjct: 305 RFANRSE 311

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|395146546|gb|AFN53699.1| hypothetical protein [Linum usitatissimum]

 Score =  567 bits (1462), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 276/305 (90%), Positives = 293/305 (96%), Gaps = 1/305 (0%)

Query: 1   MADTGVVTVYGNGAIYE-TTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAV 59
           MAD+GVVTVYGN A+YE TTKKS FSVKVGLAQMLRGGVIMDVV  +QARIAEEAGACAV
Sbjct: 1   MADSGVVTVYGNAALYEPTTKKSTFSVKVGLAQMLRGGVIMDVVNADQARIAEEAGACAV 60

Query: 60  MALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD 119
           MALERVPADIR+QGGVARMSDPQLIK+IK SVTIPVMAKARIGHFVEAQILEA+G+DY+D
Sbjct: 61  MALERVPADIRSQGGVARMSDPQLIKEIKQSVTIPVMAKARIGHFVEAQILEALGIDYID 120

Query: 120 ESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVR 179
           ESEVLT ADE+NHINKHNFR+PFVCGCRNLGE+LRRIREGAAMIRTKGEAGTGN++EAVR
Sbjct: 121 ESEVLTLADEDNHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNVIEAVR 180

Query: 180 HVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAA 239
           HVRSVMGDIRVLRNMDDDEVFTFAK IAAPYDLVMQTKQLGRLPVV FAAGGVATPADAA
Sbjct: 181 HVRSVMGDIRVLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAA 240

Query: 240 MMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLND 299
           MMMQLGCDGVFVGSGVFKSGDP RRARAIVQAVT+Y+DP+VLAEVSCGLGEAMVGI+LND
Sbjct: 241 MMMQLGCDGVFVGSGVFKSGDPARRARAIVQAVTHYTDPEVLAEVSCGLGEAMVGINLND 300

Query: 300 VKVER 304
             VER
Sbjct: 301 PNVER 305

Source: Linum usitatissimum

Species: Linum usitatissimum

Genus: Linum

Family: Linaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	310
TAIR|locus:2179142	309	RSR4 "REDUCED SUGAR RESPONSE 4	0.996	1.0	0.812	1.2e-129
TAIR|locus:2042932	309	PDX1.1 "pyridoxine biosynthesi	0.996	1.0	0.787	4.3e-125
DICTYBASE|DDB_G0288299	305	pdx1 "vitamin B6 biosynthesis	0.941	0.957	0.643	1.2e-95
POMBASE|SPAC29B12.04	296	snz1 "pyridoxine biosynthesis	0.929	0.972	0.657	2e-95
TIGR_CMR|CHY_2703	294	CHY_2703 "pyridoxine biosynthe	0.932	0.982	0.658	8.7e-95
UNIPROTKB|Q3Z9H3	293	pdxS "Pyridoxal biosynthesis l	0.919	0.972	0.628	1.9e-92
TIGR_CMR|DET_0380	293	DET_0380 "pyridoxine biosynthe	0.919	0.972	0.628	1.9e-92
ASPGD|ASPL0000069714	304	pyroA [Emericella nidulans (ta	0.919	0.937	0.643	3e-92
TAIR|locus:2093427	314	PDX1.2 "pyridoxine biosynthesi	0.977	0.964	0.555	7.5e-89
UNIPROTKB|P60796	299	pdxS "Pyridoxal biosynthesis l	0.912	0.946	0.616	5.4e-86

TAIR|locus:2179142 RSR4 "REDUCED SUGAR RESPONSE 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 1272 (452.8 bits), Expect = 1.2e-129, P = 1.2e-129
 Identities = 252/310 (81%), Positives = 270/310 (87%)

Query:     1 MADTGVVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVM 60
             M  TGVV VYGNGAI E  KKSPFSVKVGLAQMLRGGVIMDVV  EQARIAEEAGACAVM
Sbjct:     1 MEGTGVVAVYGNGAITEA-KKSPFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAVM 59

Query:    61 ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE 120
             ALERVPADIRAQGGVARMSDPQ+IK+IK +VTIPVMAKARIGHFVEAQILEAIG+DY+DE
Sbjct:    60 ALERVPADIRAQGGVARMSDPQMIKEIKQAVTIPVMAKARIGHFVEAQILEAIGIDYIDE 119

Query:   121 SEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRH 180
             SEVLT ADE++HINKHNFR+PFVCGCRNLGE+LRRIREGAAMIRTKGEAGTGNI+EAVRH
Sbjct:   120 SEVLTLADEDHHINKHNFRIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNIIEAVRH 179

Query:   181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXM 240
             VRSV GDIRVLRNMDDDEVFTFAK +AAPYDLVMQTKQLGRLPVV F            +
Sbjct:   180 VRSVNGDIRVLRNMDDDEVFTFAKKLAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAAL 239

Query:   241 MMQLGCDXXXXXXXXXXXXDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDV 300
             MMQLGCD            DP RRARAIVQAVT+YSDP++L EVSCGLGEAMVGI+LND 
Sbjct:   240 MMQLGCDGVFVGSGIFKSGDPARRARAIVQAVTHYSDPEMLVEVSCGLGEAMVGINLNDE 299

Query:   301 KVERYANRSD 310
             KVER+ANRS+
Sbjct:   300 KVERFANRSE 309

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0042823 "pyridoxal phosphate biosynthetic process" evidence=IEA

GO:0010224 "response to UV-B" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0042819 "vitamin B6 biosynthetic process" evidence=IGI;RCA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0006982 "response to lipid hydroperoxide" evidence=IMP

GO:0008615 "pyridoxine biosynthetic process" evidence=IGI

GO:0012505 "endomembrane system" evidence=IDA

GO:0042538 "hyperosmotic salinity response" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006520 "cellular amino acid metabolic process" evidence=IMP

GO:0015994 "chlorophyll metabolic process" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0009651 "response to salt stress" evidence=IMP

GO:0010335 "response to non-ionic osmotic stress" evidence=IMP

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2042932 PDX1.1 "pyridoxine biosynthesis 1.1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1229 (437.7 bits), Expect = 4.3e-125, P = 4.3e-125
 Identities = 244/310 (78%), Positives = 270/310 (87%)

Query:     1 MADTGVVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVM 60
             MA TGVV VYG GA+ ET +KSPFSVKVGLAQMLRGGVIMDVV  EQARIAEEAGACAVM
Sbjct:     1 MAGTGVVAVYGEGAMTETKQKSPFSVKVGLAQMLRGGVIMDVVNAEQARIAEEAGACAVM 60

Query:    61 ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE 120
             ALERVPADIRAQGGVARMSDP++IK+IK++VTIPVMAKARIGHFVEAQILEAIGVDYVDE
Sbjct:    61 ALERVPADIRAQGGVARMSDPEMIKEIKNAVTIPVMAKARIGHFVEAQILEAIGVDYVDE 120

Query:   121 SEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRH 180
             SEVLT ADE+NHINKHNF++PFVCGCRNLGE+LRRIREGAAMIRTKGEAGTGN+VEAVRH
Sbjct:   121 SEVLTLADEDNHINKHNFKIPFVCGCRNLGEALRRIREGAAMIRTKGEAGTGNVVEAVRH 180

Query:   181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXM 240
             VRSV G IR+LR+MDDDEVFT+AK IAAPYDLV+QTK+LGRLPVV F            +
Sbjct:   181 VRSVNGAIRLLRSMDDDEVFTYAKKIAAPYDLVVQTKELGRLPVVQFAAGGVATPADAAL 240

Query:   241 MMQLGCDXXXXXXXXXXXXDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDV 300
             MMQLGCD            DPV+RA+AIVQAVTNY D  VLAEVSCGLGEAMVG++L+D 
Sbjct:   241 MMQLGCDGVFVGSGVFKSGDPVKRAKAIVQAVTNYRDAAVLAEVSCGLGEAMVGLNLDD- 299

Query:   301 KVERYANRSD 310
             KVER+A+RS+
Sbjct:   300 KVERFASRSE 309

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0042823 "pyridoxal phosphate biosynthetic process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0042819 "vitamin B6 biosynthetic process" evidence=IGI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0009507 "chloroplast" evidence=IDA

DICTYBASE|DDB_G0288299 pdx1 "vitamin B6 biosynthesis protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 951 (339.8 bits), Expect = 1.2e-95, P = 1.2e-95
 Identities = 188/292 (64%), Positives = 229/292 (78%)

Query:    18 TTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVAR 77
             T   SPF +K  LAQML+GGVIMDVVTPEQARIAEEAGACAVMALE++PADIR  GGVAR
Sbjct:    10 TNNNSPFRIKSSLAQMLKGGVIMDVVTPEQARIAEEAGACAVMALEKIPADIRHFGGVAR 69

Query:    78 MSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHN 137
             MSDP +IK+I ++VTIPVMAK RIGHFVEAQIL+ IGVDY+DESEVLT AD ENHI+K  
Sbjct:    70 MSDPGMIKEIMNAVTIPVMAKVRIGHFVEAQILQEIGVDYIDESEVLTIADNENHIDKSE 129

Query:   138 FRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDD 197
             F+VPFVCGCRNLGE+LRRI EGAAMIRTKGEAGTG++VEAVRH R+V  +I+ ++NMD  
Sbjct:   130 FKVPFVCGCRNLGEALRRISEGAAMIRTKGEAGTGDVVEAVRHARAVNKEIKKIQNMDPH 189

Query:   198 EVFTFAKNIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXX 257
             E++T+AK I AP +LV + K+LGRLPVV+F            MMMQLG D          
Sbjct:   190 ELYTYAKEIQAPLELVKEVKRLGRLPVVNFAAGGVATPADAAMMMQLGMDGVFVGSGIFK 249

Query:   258 XXDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVERYANRS 309
               DP +RA+AIVQAVT++++P ++A+VS  LGEAMVGI+++ +K +   N S
Sbjct:   250 SGDPAKRAKAIVQAVTHFNNPQIVAKVSENLGEAMVGINVDTLKDKENQNWS 301

GO:0005615 "extracellular space" evidence=IDA

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0042823 "pyridoxal phosphate biosynthetic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0008614 "pyridoxine metabolic process" evidence=ISS

GO:0008615 "pyridoxine biosynthetic process" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

POMBASE|SPAC29B12.04 snz1 "pyridoxine biosynthesis protein" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 949 (339.1 bits), Expect = 2.0e-95, P = 2.0e-95
 Identities = 190/289 (65%), Positives = 225/289 (77%)

Query:    21 KSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSD 80
             K    VK GLAQML+GGVIMDVV  EQARIAE AGACAVMALERVPADIRAQGGVARMSD
Sbjct:     6 KGSTQVKAGLAQMLKGGVIMDVVNAEQARIAEAAGACAVMALERVPADIRAQGGVARMSD 65

Query:    81 PQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRV 140
             P +IK+I+++V+IPVMAK RIGHFVEAQILE+IGVDY+DESEVLTPAD+ NHI K  F V
Sbjct:    66 PSMIKEIQAAVSIPVMAKVRIGHFVEAQILESIGVDYIDESEVLTPADDINHIEKSKFTV 125

Query:   141 PFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVF 200
             PFVCG RNLGE+LRRI EGAAMIRTKGEAGTG++VEAVRH R + G++R +++M  DE++
Sbjct:   126 PFVCGSRNLGEALRRISEGAAMIRTKGEAGTGDVVEAVRHTRQMQGELRRVKSMSPDELY 185

Query:   201 TFAKNIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXD 260
             T+AK IAAP DLV +  QLGRLPVV+F            +MMQLGCD            D
Sbjct:   186 TYAKEIAAPIDLVKECAQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFLSGD 245

Query:   261 PVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKV-ERYANR 308
             P +RARAIV+AVT+Y+DP +LAEVS  LG AMVG  ++ ++  E+ A R
Sbjct:   246 PAKRARAIVRAVTHYNDPKILAEVSENLGAAMVGRSVSSLEEKEKLATR 294

GO:0003674 "molecular_function" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0008615 "pyridoxine biosynthetic process" evidence=IGI;IMP

GO:0042823 "pyridoxal phosphate biosynthetic process" evidence=IEA

TIGR_CMR|CHY_2703 CHY_2703 "pyridoxine biosynthesis protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
 Identities = 191/290 (65%), Positives = 222/290 (76%)

Query:    20 KKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMS 79
             +K  + VK GLA+ML+GGVIMDV TPEQA+IAEEAGACAVMALERVPADIRA GGVARM+
Sbjct:     3 EKGTWVVKKGLAEMLKGGVIMDVTTPEQAKIAEEAGACAVMALERVPADIRAAGGVARMA 62

Query:    80 DPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFR 139
             DP +I +I  +VTIPVMAK RIGHFVEAQILEA+GVDY+DESEVLTPADE  HI+KH F+
Sbjct:    63 DPNVILRIMDAVTIPVMAKVRIGHFVEAQILEALGVDYIDESEVLTPADELFHIDKHAFK 122

Query:   140 VPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEV 199
             VPFVCG RNLGE+LRRI EGAAMIRTKGE GTGN+VEAVRH+R VMG+IR ++NM  +E+
Sbjct:   123 VPFVCGARNLGEALRRIGEGAAMIRTKGEPGTGNVVEAVRHMRQVMGEIRRIQNMPREEL 182

Query:   200 FTFAKNIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXX 259
              T AK + APYDLV+   + GRLPVV+F            +MMQLG D            
Sbjct:   183 MTAAKEMGAPYDLVLYVHEHGRLPVVNFAAGGIATPADAALMMQLGADGIFVGSGIFKSK 242

Query:   260 DPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDV-KVERYANR 308
             DPV RA+AIV A T Y DP VLAEVS GLGEAM GID+  + + ER + R
Sbjct:   243 DPVGRAKAIVAATTYYDDPKVLAEVSKGLGEAMPGIDIKTISQTERMSER 292

GO:0003824 "catalytic activity" evidence=ISS

GO:0008615 "pyridoxine biosynthetic process" evidence=ISS

UNIPROTKB|Q3Z9H3 pdxS "Pyridoxal biosynthesis lyase PdxS" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 921 (329.3 bits), Expect = 1.9e-92, P = 1.9e-92
 Identities = 179/285 (62%), Positives = 222/285 (77%)

Query:    24 FSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQL 83
             F VK GLAQML+GGVIMDV TPEQA+IAEEAGACAVMALERVP+DIRA GGVARM+DP +
Sbjct:     6 FKVKSGLAQMLKGGVIMDVTTPEQAKIAEEAGACAVMALERVPSDIRAAGGVARMADPTI 65

Query:    84 IKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFV 143
             I++I   V+IPVMAK RIGHFVEAQILE++GVDY+DESEVLTPADE  H+ KH+F+VPFV
Sbjct:    66 IEKIMKVVSIPVMAKCRIGHFVEAQILESMGVDYIDESEVLTPADESFHVWKHDFKVPFV 125

Query:   144 CGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203
             CGCR+LGE+LRRI EGAAMIRTKGEAGTGNIVEAVRH+RSVMG +R +++M  DE+  +A
Sbjct:   126 CGCRDLGEALRRIGEGAAMIRTKGEAGTGNIVEAVRHMRSVMGSVRRVQSMSADELSAYA 185

Query:   204 KNIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVR 263
             K I AP +LV++  + G+LPVV+F            +MMQLG D            DP  
Sbjct:   186 KEINAPLELVLELHKTGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSDPAA 245

Query:   264 RARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVERYANR 308
              A+A+V+AVT+Y D  VLAE+S GLG+AM G+D+  ++ ++  +R
Sbjct:   246 MAKAVVKAVTHYKDAKVLAEISKGLGDAMPGLDIKQIEPDKLISR 290

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|DET_0380 DET_0380 "pyridoxine biosynthesis protein" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 921 (329.3 bits), Expect = 1.9e-92, P = 1.9e-92
 Identities = 179/285 (62%), Positives = 222/285 (77%)

Query:    24 FSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQL 83
             F VK GLAQML+GGVIMDV TPEQA+IAEEAGACAVMALERVP+DIRA GGVARM+DP +
Sbjct:     6 FKVKSGLAQMLKGGVIMDVTTPEQAKIAEEAGACAVMALERVPSDIRAAGGVARMADPTI 65

Query:    84 IKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFV 143
             I++I   V+IPVMAK RIGHFVEAQILE++GVDY+DESEVLTPADE  H+ KH+F+VPFV
Sbjct:    66 IEKIMKVVSIPVMAKCRIGHFVEAQILESMGVDYIDESEVLTPADESFHVWKHDFKVPFV 125

Query:   144 CGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA 203
             CGCR+LGE+LRRI EGAAMIRTKGEAGTGNIVEAVRH+RSVMG +R +++M  DE+  +A
Sbjct:   126 CGCRDLGEALRRIGEGAAMIRTKGEAGTGNIVEAVRHMRSVMGSVRRVQSMSADELSAYA 185

Query:   204 KNIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVR 263
             K I AP +LV++  + G+LPVV+F            +MMQLG D            DP  
Sbjct:   186 KEINAPLELVLELHKTGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSDPAA 245

Query:   264 RARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVERYANR 308
              A+A+V+AVT+Y D  VLAE+S GLG+AM G+D+  ++ ++  +R
Sbjct:   246 MAKAVVKAVTHYKDAKVLAEISKGLGDAMPGLDIKQIEPDKLISR 290

GO:0003674 "molecular_function" evidence=ND

GO:0008615 "pyridoxine biosynthetic process" evidence=ISS

ASPGD|ASPL0000069714 pyroA [Emericella nidulans (taxid:162425)]

 Score = 919 (328.6 bits), Expect = 3.0e-92, P = 3.0e-92
 Identities = 188/292 (64%), Positives = 224/292 (76%)

Query:    24 FSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQL 83
             F+VK GLAQML+GGVIMDVV  EQARIAEEAGA AVMALERVPADIRAQGGVARMSDP +
Sbjct:    11 FTVKAGLAQMLKGGVIMDVVNAEQARIAEEAGAAAVMALERVPADIRAQGGVARMSDPSM 70

Query:    84 IKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFV 143
             IK+I  +VTIPVMAKARIGHFVE QILEAIGVDY+DESEVLTPAD   H+ KHNF+ PFV
Sbjct:    71 IKEIMEAVTIPVMAKARIGHFVECQILEAIGVDYIDESEVLTPADNLYHVTKHNFKAPFV 130

Query:   144 CGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIR----VLRNMDDDE- 198
             CGCRNLGE+LRRI EGAAMIRTKGEAGTG++VEAV+H+R+V  +I     +L++  D E 
Sbjct:   131 CGCRNLGEALRRISEGAAMIRTKGEAGTGDVVEAVKHMRTVNAEIARARAILQSSPDPEP 190

Query:   199 -VFTFAKNIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXX 257
              +  +A+ + APY+L+ +  + GRLPVV+F            +MMQLGCD          
Sbjct:   191 ELRAYARELEAPYELLREAAEKGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFK 250

Query:   258 XXDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVE-RYANR 308
               D  +RA+AIVQAVT+Y DP VLAEVS GLGEAMVGI+++ +K E + A R
Sbjct:   251 SGDAKKRAKAIVQAVTHYKDPKVLAEVSQGLGEAMVGINVSHMKDEDKLAKR 302

GO:0008615 "pyridoxine biosynthetic process" evidence=IMP

GO:0005576 "extracellular region" evidence=IDA

GO:0005829 "cytosol" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0042823 "pyridoxal phosphate biosynthetic process" evidence=IEA

TAIR|locus:2093427 PDX1.2 "pyridoxine biosynthesis 1.2" [Arabidopsis thaliana (taxid:3702)]

 Score = 887 (317.3 bits), Expect = 7.5e-89, P = 7.5e-89
 Identities = 171/308 (55%), Positives = 228/308 (74%)

Query:     3 DTGVVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMAL 62
             D G VT+Y   AI +  K  PFSVKVGLAQ+LRGG I++V +  QA++AE AGAC+V+  
Sbjct:    10 DQGAVTLYSGTAITDAKKNHPFSVKVGLAQVLRGGAIVEVSSVNQAKLAESAGACSVIVS 69

Query:    63 ERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESE 122
             +  P  +R++GGV RM DP LIK++K +V++PVMA+AR+GHFVEAQILE++ VDY+DESE
Sbjct:    70 D--P--VRSRGGVRRMPDPVLIKEVKRAVSVPVMARARVGHFVEAQILESLAVDYIDESE 125

Query:   123 VLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGE-AGTGNIVEAVRHV 181
             +++ AD+++ INKHNFR PF+CGCR+ GE+LRRIREGAAMIR +G+   TGNI E V++V
Sbjct:   126 IISVADDDHFINKHNFRSPFICGCRDTGEALRRIREGAAMIRIQGDLTATGNIAETVKNV 185

Query:   182 RSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMM 241
             RS+MG++RVL NMDDDEVFTFAK I+APYDLV QTKQ+GR+PVV F            +M
Sbjct:   186 RSLMGEVRVLNNMDDDEVFTFAKKISAPYDLVAQTKQMGRVPVVQFASGGITTPADAALM 245

Query:   242 MQLGCDXXXXXXXXXXXXDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVK 301
             MQLGCD            DP ++ R+IVQAV +Y+DP VLAE+S GL  AM  +++   +
Sbjct:   246 MQLGCDGVFVGSEVFDGPDPFKKLRSIVQAVQHYNDPHVLAEMSSGLENAMESLNVRGDR 305

Query:   302 VERYANRS 309
             ++ +   S
Sbjct:   306 IQDFGQGS 313

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0042823 "pyridoxal phosphate biosynthetic process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0042819 "vitamin B6 biosynthetic process" evidence=RCA

UNIPROTKB|P60796 pdxS "Pyridoxal biosynthesis lyase PdxS" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 860 (307.8 bits), Expect = 5.4e-86, P = 5.4e-86
 Identities = 175/284 (61%), Positives = 213/284 (75%)

Query:    26 VKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIK 85
             VK G+A+ML+GGVIMDVVTPEQARIAE AGA AVMALERVPADIRAQGGV+RMSDP +I+
Sbjct:    14 VKRGMAEMLKGGVIMDVVTPEQARIAEGAGAVAVMALERVPADIRAQGGVSRMSDPDMIE 73

Query:    86 QIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCG 145
              I ++VTIPVMAK RIGHFVEAQIL+ +GVDY+DESEVLTPAD  +HI+K NF VPFVCG
Sbjct:    74 GIIAAVTIPVMAKVRIGHFVEAQILQTLGVDYIDESEVLTPADYAHHIDKWNFTVPFVCG 133

Query:   146 CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN 205
               NLGE+LRRI EGAAMIR+KGEAGTG++  A  H+R++ G+IR L +M +DE+F  AK 
Sbjct:   134 ATNLGEALRRISEGAAMIRSKGEAGTGDVSNATTHMRAIGGEIRRLTSMSEDELFVAAKE 193

Query:   206 IAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVRRA 265
             + APY+LV +  + G+LPV  F            MMMQLG +             P  RA
Sbjct:   194 LQAPYELVAEVARAGKLPVTLFTAGGIATPADAAMMMQLGAEGVFVGSGIFKSGAPEHRA 253

Query:   266 RAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKV-ERYANR 308
              AIV+A T + DPDVLA+VS GLGEAMVGI+++++ V  R A R
Sbjct:   254 AAIVKATTFFDDPDVLAKVSRGLGEAMVGINVDEIAVGHRLAQR 297

GO:0005886 "plasma membrane" evidence=IDA

GO:0016843 "amine-lyase activity" evidence=IDA

GO:0040007 "growth" evidence=IDA

GO:0042823 "pyridoxal phosphate biosynthetic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A0QWG8	PDXS_MYCS2	4, ., -, ., -, ., -	0.6936	0.9129	0.9339	yes	no
Q5NHE6	PDXS_FRATT	4, ., -, ., -, ., -	0.6829	0.9161	0.9895	yes	no
Q3ZZB8	PDXS_DEHSC	4, ., -, ., -, ., -	0.6982	0.9193	0.9726	yes	no
A9WFT9	PDXS_CHLAA	4, ., -, ., -, ., -	0.7577	0.9322	0.9863	yes	no
P60800	PDXS_CORDI	4, ., -, ., -, ., -	0.7042	0.9129	0.9528	yes	no
Q6AFB9	PDXS_LEIXX	4, ., -, ., -, ., -	0.6836	0.9387	0.9732	yes	no
A9B891	PDXS_HERA2	4, ., -, ., -, ., -	0.7402	0.9064	0.9590	yes	no
Q69LA6	PDX11_ORYSJ	No assigned EC number	0.8594	0.9903	0.9654	yes	no
A5U5V7	PDXS_MYCTA	4, ., -, ., -, ., -	0.6901	0.9129	0.9464	yes	no
A5UY94	PDXS_ROSS1	4, ., -, ., -, ., -	0.7857	0.9032	0.9556	yes	no
B2SDL5	PDXS_FRATM	4, ., -, ., -, ., -	0.6829	0.9161	0.9895	yes	no
Q97LG7	PDXS_CLOAB	4, ., -, ., -, ., -	0.6917	0.8967	0.9553	yes	no
B0K4N7	PDXS_THEPX	4, ., -, ., -, ., -	0.6853	0.9193	0.9760	yes	no
B0TAQ4	PDXS_HELMI	4, ., -, ., -, ., -	0.7108	0.9258	0.9728	yes	no
A7NQB8	PDXS_ROSCS	4, ., -, ., -, ., -	0.7785	0.9032	0.9556	yes	no
A0Q5I1	PDXS_FRATN	4, ., -, ., -, ., -	0.6829	0.9161	0.9895	yes	no
Q73WF0	PDXS_MYCPA	4, ., -, ., -, ., -	0.6901	0.9129	0.9339	N/A	no
A7NDQ3	PDXS_FRATF	4, ., -, ., -, ., -	0.6829	0.9161	0.9895	yes	no
A1KLV6	PDXS_MYCBP	4, ., -, ., -, ., -	0.6901	0.9129	0.9464	yes	no
Q14IU8	PDXS_FRAT1	4, ., -, ., -, ., -	0.6829	0.9161	0.9895	yes	no
B8I363	PDXS_CLOCE	4, ., -, ., -, ., -	0.6573	0.9193	0.9760	yes	no
B2A2Z7	PDXS_NATTJ	4, ., -, ., -, ., -	0.7137	0.9322	0.9796	yes	no
P60796	PDXS_MYCTU	4, ., -, ., -, ., -	0.6901	0.9129	0.9464	yes	no
Q9AT63	PDX1_GINBI	No assigned EC number	0.8451	0.9967	1.0	N/A	no
O14027	PDX1_SCHPO	No assigned EC number	0.7335	0.9290	0.9729	yes	no
B9LIK3	PDXS_CHLSY	4, ., -, ., -, ., -	0.7577	0.9322	0.9863	yes	no
Q9UW83	PDX1_EMENI	No assigned EC number	0.7307	0.9032	0.9210	yes	no
B0KAS1	PDXS_THEP3	4, ., -, ., -, ., -	0.6818	0.9193	0.9760	yes	no
Q9FT25	PDX1_PHAVU	No assigned EC number	0.8954	0.9806	0.9743	N/A	no
O80448	PDX11_ARATH	No assigned EC number	0.8645	0.9967	1.0	no	no
Q2A260	PDXS_FRATH	4, ., -, ., -, ., -	0.6829	0.9161	0.9895	yes	no
Q0BKT2	PDXS_FRATO	4, ., -, ., -, ., -	0.6829	0.9161	0.9895	yes	no
Q72KG1	PDXS_THET2	4, ., -, ., -, ., -	0.7103	0.9322	0.9863	yes	no
Q8W3D0	PDX12_ORYSJ	No assigned EC number	0.8478	0.9870	0.9776	no	no
B8J2D5	PDXS_DESDA	4, ., -, ., -, ., -	0.7112	0.9129	0.9658	yes	no
O59905	PDX1_CERNC	No assigned EC number	0.7058	0.9290	0.8396	N/A	no
Q8L940	PDX13_ARATH	No assigned EC number	0.8870	0.9967	1.0	yes	no
A4IZB5	PDXS_FRATW	4, ., -, ., -, ., -	0.6829	0.9161	0.9895	yes	no
Q8RBJ3	PDXS_THETN	4, ., -, ., -, ., -	0.6818	0.9193	0.9760	yes	no
Q54J47	PDX1_DICDI	No assigned EC number	0.7226	0.9419	0.9573	yes	no
B8G663	PDXS_CHLAD	4, ., -, ., -, ., -	0.7577	0.9322	0.9863	yes	no
Q5SKD9	PDXS_THET8	4, ., -, ., -, ., -	0.7103	0.9322	0.9863	yes	no
P60795	PDXS_MYCBO	4, ., -, ., -, ., -	0.6901	0.9129	0.9464	yes	no
A0QIC8	PDXS_MYCA1	4, ., -, ., -, ., -	0.6901	0.9129	0.9339	yes	no
C1AF77	PDXS_MYCBT	4, ., -, ., -, ., -	0.6901	0.9129	0.9464	yes	no
Q3Z9H3	PDXS_DEHE1	4, ., -, ., -, ., -	0.7052	0.9193	0.9726	yes	no
Q39963	PDX1_HEVBR	No assigned EC number	0.9258	0.9967	1.0	N/A	no
Q8WPW2	PDX1_SUBDO	No assigned EC number	0.6448	0.9322	0.9444	N/A	no
B0TZ17	PDXS_FRAP2	4, ., -, ., -, ., -	0.6724	0.9161	0.9895	yes	no
A5FS82	PDXS_DEHSB	4, ., -, ., -, ., -	0.6982	0.9193	0.9726	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	310
PRK04180	293	PRK04180, PRK04180, pyridoxal biosynthesis lyase P	0.0
cd04727	283	cd04727, pdxS, PdxS is a subunit of the pyridoxal	0.0
COG0214	296	COG0214, SNZ1, Pyridoxine biosynthesis enzyme [Coe	0.0
TIGR00343	287	TIGR00343, TIGR00343, pyridoxal 5'-phosphate synth	1e-163
pfam01680	197	pfam01680, SOR_SNZ, SOR/SNZ family	1e-129
cd04722	200	cd04722, TIM_phosphate_binding, TIM barrel protein	8e-08
cd04728	248	cd04728, ThiG, Thiazole synthase (ThiG) is the tet	2e-07
COG2022	262	COG2022, ThiG, Uncharacterized enzyme of thiazole	2e-07
PRK00208	250	PRK00208, thiG, thiazole synthase; Reviewed	3e-07
pfam05690	246	pfam05690, ThiG, Thiazole biosynthesis protein Thi	4e-07
PRK11840	326	PRK11840, PRK11840, bifunctional sulfur carrier pr	7e-07
CHL00162	267	CHL00162, thiG, thiamin biosynthesis protein G; Va	1e-04
cd00564	196	cd00564, TMP_TenI, Thiamine monophosphate synthase	2e-04
cd04730	236	cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD	4e-04
COG0042	323	COG0042, COG0042, tRNA-dihydrouridine synthase [Tr	4e-04
PRK00043	212	PRK00043, thiE, thiamine-phosphate pyrophosphoryla	5e-04
PRK07565	334	PRK07565, PRK07565, dihydroorotate dehydrogenase 2	0.001
cd02801	231	cd02801, DUS_like_FMN, Dihydrouridine synthase-lik	0.002
COG0042	323	COG0042, COG0042, tRNA-dihydrouridine synthase [Tr	0.003
COG0352	211	COG0352, ThiE, Thiamine monophosphate synthase [Co	0.003
cd04729	219	cd04729, NanE, N-acetylmannosamine-6-phosphate epi	0.003
TIGR00737	319	TIGR00737, nifR3_yhdG, putative TIM-barrel protein	0.003
cd02801	231	cd02801, DUS_like_FMN, Dihydrouridine synthase-lik	0.004

>gnl|CDD|179769 PRK04180, PRK04180, pyridoxal biosynthesis lyase PdxS; Provisional

 Score =  572 bits (1478), Expect = 0.0
 Identities = 210/284 (73%), Positives = 249/284 (87%), Gaps = 1/284 (0%)

Query: 26  VKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIK 85
           VK G A+ML+GGVIMDVV  EQA+IAEEAGA AVMALERVPADIRA GGVARM+DP++I+
Sbjct: 8   VKRGFAEMLKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIE 67

Query: 86  QIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCG 145
           +I  +V+IPVMAKARIGHFVEAQILEA+GVDY+DESEVLTPADEE HI+K +F VPFVCG
Sbjct: 68  EIMDAVSIPVMAKARIGHFVEAQILEALGVDYIDESEVLTPADEEYHIDKWDFTVPFVCG 127

Query: 146 CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN 205
            RNLGE+LRRI EGAAMIRTKGEAGTGN+VEAVRH+R + G+IR L +M +DE++T AK 
Sbjct: 128 ARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKE 187

Query: 206 IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRA 265
           + APY+LV +  +LGRLPVV+FAAGG+ATPADAA+MMQLG DGVFVGSG+FKSGDP +RA
Sbjct: 188 LQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRA 247

Query: 266 RAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKV-ERYANR 308
           RAIV+A T+Y DP+VLAEVS GLGEAMVGID++++   ER   R
Sbjct: 248 RAIVEATTHYDDPEVLAEVSKGLGEAMVGIDIDELPPEERLQER 291

Length = 293

>gnl|CDD|240078 cd04727, pdxS, PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

 Score =  539 bits (1390), Expect = 0.0
 Identities = 210/283 (74%), Positives = 247/283 (87%), Gaps = 1/283 (0%)

Query: 28  VGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQI 87
            G AQML+GGVIMDV   EQARIAEEAGA AVMALERVPADIRA GGVARM+DP++IK+I
Sbjct: 1   RGFAQMLKGGVIMDVTNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEI 60

Query: 88  KSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCR 147
             +V+IPVMAK RIGHFVEAQILEA+GVD +DESEVLTPADEE+HI+KH F+VPFVCG R
Sbjct: 61  MDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVLTPADEEHHIDKHKFKVPFVCGAR 120

Query: 148 NLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIA 207
           NLGE+LRRI EGAAMIRTKGEAGTGN+VEAVRH+R+V G+IR L++M ++E++  AK I 
Sbjct: 121 NLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQ 180

Query: 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARA 267
           APY+LV +T +LGRLPVV+FAAGGVATPADAA+MMQLG DGVFVGSG+FKS +P +RARA
Sbjct: 181 APYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARA 240

Query: 268 IVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVE-RYANRS 309
           IV+AVT+Y DP++LAEVS GLGEAMVGID+  +K E R   R 
Sbjct: 241 IVEAVTHYDDPEILAEVSEGLGEAMVGIDIASLKEEERMQERG 283

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. Length = 283

>gnl|CDD|223292 COG0214, SNZ1, Pyridoxine biosynthesis enzyme [Coenzyme metabolism]

 Score =  521 bits (1345), Expect = 0.0
 Identities = 208/293 (70%), Positives = 246/293 (83%), Gaps = 1/293 (0%)

Query: 17  ETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVA 76
           E  +     VK G AQML+GGVIMDVV  EQARIAEEAGA AVMALERVPADIRA GGVA
Sbjct: 2   EELRTGTERVKRGFAQMLKGGVIMDVVNAEQARIAEEAGAVAVMALERVPADIRAAGGVA 61

Query: 77  RMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKH 136
           RM+DP++I++I  +V+IPVMAK RIGHFVEAQILEA+GVD +DESEVLTPADEE HINK 
Sbjct: 62  RMADPKMIEEIMDAVSIPVMAKVRIGHFVEAQILEALGVDMIDESEVLTPADEEFHINKW 121

Query: 137 NFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDD 196
            F VPFVCG RNLGE+LRRI EGAAMIRTKGEAGTGN+VEAVRH+R + G+IR L++M +
Sbjct: 122 KFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKINGEIRRLQSMTE 181

Query: 197 DEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256
           DE++  AK + APY+LV +  +LGRLPVV+FAAGGVATPADAA+MMQLG DGVFVGSG+F
Sbjct: 182 DELYVVAKELQAPYELVKEVAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIF 241

Query: 257 KSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKV-ERYANR 308
           KS +P +RA+AIV+A T+Y DP+VLAEVS GLGEAM GID++++   ER   R
Sbjct: 242 KSSNPEKRAKAIVEATTHYDDPEVLAEVSEGLGEAMKGIDISELPEEERLQER 294

Length = 296

>gnl|CDD|129443 TIGR00343, TIGR00343, pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

 Score =  456 bits (1174), Expect = e-163
 Identities = 193/279 (69%), Positives = 234/279 (83%), Gaps = 1/279 (0%)

Query: 26  VKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIK 85
           +K GLAQML+GGVIMDVV PEQA+IAEEAGA AVMALERVPADIRA GGVARMSDP++IK
Sbjct: 1   LKKGLAQMLKGGVIMDVVNPEQAKIAEEAGAVAVMALERVPADIRASGGVARMSDPKMIK 60

Query: 86  QIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCG 145
           +I  +V+IPVMAK RIGHFVEAQILEA+GVDY+DESEVLTPAD   HI+K  F+VPFVCG
Sbjct: 61  EIMDAVSIPVMAKVRIGHFVEAQILEALGVDYIDESEVLTPADWTFHIDKKKFKVPFVCG 120

Query: 146 CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVF-TFAK 204
            R+LGE+LRRI EGAAMIRTKGEAGTGNIVEAVRH+R +  +IR ++NM ++E     AK
Sbjct: 121 ARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAK 180

Query: 205 NIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRR 264
            +  P +L+++  +LG+LPVV+FAAGGVATPADAA+MMQLG DGVFVGSG+FKS +P + 
Sbjct: 181 ELRVPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKL 240

Query: 265 ARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVE 303
           A+AIV+A T+Y +P+ LAEVS  LGEAM GI ++ +   
Sbjct: 241 AKAIVEATTHYDNPEKLAEVSKDLGEAMKGISISSISEA 279

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals [Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridoxine]. Length = 287

>gnl|CDD|201920 pfam01680, SOR_SNZ, SOR/SNZ family

 Score =  365 bits (939), Expect = e-129
 Identities = 151/197 (76%), Positives = 175/197 (88%)

Query: 33  MLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT 92
           ML+GGVIMDVV  EQARIAEEAGA AVMALERVPADIRA GGVARMSDP++IK+I ++V+
Sbjct: 1   MLKGGVIMDVVNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMSDPKMIKEIMNAVS 60

Query: 93  IPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGES 152
           IPVMAK RIGHFVEAQILEAIGVDY+DESEVLTPADE  HI+K  F VPFVCG RNLGE+
Sbjct: 61  IPVMAKVRIGHFVEAQILEAIGVDYIDESEVLTPADEFFHIDKKKFTVPFVCGARNLGEA 120

Query: 153 LRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDL 212
           LRRI EGAAMIRTKGEAGTGN+VEAVRH+R + G+IR L++M +DE++T AK +AAPY+L
Sbjct: 121 LRRIWEGAAMIRTKGEAGTGNVVEAVRHMRLMNGEIRRLQSMSEDELYTVAKELAAPYEL 180

Query: 213 VMQTKQLGRLPVVHFAA 229
           V Q  +LG+LPVV+FAA
Sbjct: 181 VKQVAELGKLPVVNFAA 197

Members of this family are enzymes involved in a new pathway of pyridoxine/pyridoxal 5-phosphate biosynthesis. This family was formerly known as UPF0019. Length = 197

>gnl|CDD|240073 cd04722, TIM_phosphate_binding, TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

 Score = 51.4 bits (123), Expect = 8e-08
 Identities = 48/220 (21%), Positives = 73/220 (33%), Gaps = 47/220 (21%)

Query: 46  EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFV 105
           E A+ A EAGA A++   R      A        D +++K++ +   +P+  +  I    
Sbjct: 16  ELAKAAAEAGADAIIVGTRSSDPEEA-----ETDDKEVLKEVAAETDLPLGVQLAINDAA 70

Query: 106 EAQ-----ILEAIGVDYVDESEVLTPADEENHINKHNFR-----VPFVCGCRNLGESLRR 155
            A         A G D V+    +     E+       R     V  V      GE    
Sbjct: 71  AAVDIAAAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAA 130

Query: 156 --IREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLV 213
                G   +      G G   +AV     +                            +
Sbjct: 131 AAEEAGVDEVGLGNGGGGGGGRDAVPIADLL----------------------------L 162

Query: 214 MQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253
           +  K+  ++PV   A GG+  P DAA  + LG DGV VGS
Sbjct: 163 ILAKRGSKVPV--IAGGGINDPEDAAEALALGADGVIVGS 200

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. Length = 200

>gnl|CDD|240079 cd04728, ThiG, Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 20/42 (47%), Positives = 27/42 (64%)

Query: 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272
           G+ TP+DAA  M+LG D V + + + K+ DPV  ARA   AV
Sbjct: 183 GIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAV 224

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). Length = 248

>gnl|CDD|224933 COG2022, ThiG, Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT 273
            +PV+  A  G+ TP+DAA  M+LG D V + + + ++ DPV  ARA   AV 
Sbjct: 182 DVPVIVDA--GIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALAVE 232

Length = 262

>gnl|CDD|234687 PRK00208, thiG, thiazole synthase; Reviewed

 Score = 50.4 bits (122), Expect = 3e-07
 Identities = 20/42 (47%), Positives = 27/42 (64%)

Query: 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272
           G+ TP+DAA  M+LG D V + + +  +GDPV  ARA   AV
Sbjct: 183 GIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAV 224

Length = 250

>gnl|CDD|147701 pfam05690, ThiG, Thiazole biosynthesis protein ThiG

 Score = 49.9 bits (120), Expect = 4e-07
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 2/52 (3%)

Query: 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272
            +PV+  A  G+ TP+DAA  M+LG D V + + + ++ DPV  ARA   AV
Sbjct: 174 DVPVIVDA--GIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFKLAV 223

This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway. Length = 246

>gnl|CDD|236998 PRK11840, PRK11840, bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 23/52 (44%), Positives = 35/52 (67%), Gaps = 2/52 (3%)

Query: 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272
            +PV+  A  GV T +DAA+ M+LGCDGV + + + ++ +PV  ARA+  AV
Sbjct: 249 TVPVLVDA--GVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAV 298

Length = 326

>gnl|CDD|214380 CHL00162, thiG, thiamin biosynthesis protein G; Validated

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 18/52 (34%), Positives = 34/52 (65%), Gaps = 2/52 (3%)

Query: 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272
           ++PV+  A  G+ TP++A+  M+LG  GV + + V ++ +P + A+A+  AV
Sbjct: 189 KIPVIIDA--GIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLAV 238

Length = 267

>gnl|CDD|238317 cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ 270
           +L+ +  +L  +PVV  A GG+ TP +AA ++  G DGV V S +  + DP   AR ++ 
Sbjct: 140 ELLREIAELVEIPVV--AIGGI-TPENAAEVLAAGADGVAVISAITGADDPAAAARELLA 196

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. Length = 196

>gnl|CDD|240081 cd04730, NPD_like, 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

 Score = 40.9 bits (97), Expect = 4e-04
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 2/48 (4%)

Query: 206 IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253
               + LV + +    +PV+  AAGG+A     A  + LG DGV +G+
Sbjct: 141 DIGTFALVPEVRDAVDIPVI--AAGGIADGRGIAAALALGADGVQMGT 186

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. Length = 236

>gnl|CDD|223120 COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 14/106 (13%)

Query: 14  AIYETTKKSPFSVKVGLAQMLRGGVIM-DVVTPEQARIAEEAGACAVMALERVPADIRAQ 72
           A+ E     P +VK+      R G    D++  E ARI E+AGA A+     V    RAQ
Sbjct: 129 AMVEAVGDIPVTVKI------RLGWDDDDILALEIARILEDAGADALT----VHGRTRAQ 178

Query: 73  GGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQ-ILEAIGVD 116
           G +   +D   IK++K +V +IPV+A   I    +A+ +LE  G D
Sbjct: 179 GYLGP-ADWDYIKELKEAVPSIPVIANGDIKSLEDAKEMLEYTGAD 223

Length = 323

>gnl|CDD|234590 PRK00043, thiE, thiamine-phosphate pyrophosphorylase; Reviewed

 Score = 40.2 bits (95), Expect = 5e-04
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 217 KQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY 275
             +G +P+V  A GG+ TP +A  +++ G DGV V S +  + DP   ARA++ A    
Sbjct: 156 AAVGDIPIV--AIGGI-TPENAPEVLEAGADGVAVVSAITGAEDPEAAARALLAAFRAA 211

Length = 212

>gnl|CDD|236051 PRK07565, PRK07565, dihydroorotate dehydrogenase 2; Reviewed

 Score = 39.8 bits (94), Expect = 0.001
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 14/78 (17%)

Query: 48  ARIAEEAGACAVMALE----RVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK----- 98
           AR  E+AGA    ALE     +P D    G         +++ +KS+V+IPV  K     
Sbjct: 120 ARQIEQAGA---DALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPYF 176

Query: 99  ARIGHFVEAQILEAIGVD 116
           + + +  +   L+A G D
Sbjct: 177 SNLANMAKR--LDAAGAD 192

Length = 334

>gnl|CDD|239200 cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 28/91 (30%)

Query: 48  ARIAEEAGACAVMALERVPADI----------RAQGGVARMSDPQLIKQI----KSSVTI 93
           A+I EE GA  +        D+          +   G A + DP+L+ +I    + +V I
Sbjct: 73  AKIVEELGADGI--------DLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPI 124

Query: 94  PVMAKARIG-----HFVE-AQILEAIGVDYV 118
           PV  K R+G       +E A+ LE  G   +
Sbjct: 125 PVTVKIRLGWDDEEETLELAKALEDAGASAL 155

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. Length = 231

>gnl|CDD|223120 COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 68/299 (22%), Positives = 106/299 (35%), Gaps = 88/299 (29%)

Query: 24  FSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQL 83
              +V LA M        V      R+A E GA  ++  E V A     G    +     
Sbjct: 9   LRNRVILAPM------AGVTDLPFRRLARELGAYDLLYTEMVSAKALLHGRKKFLLLLDE 62

Query: 84  IK-------QIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKH 136
           ++       Q+  S    ++A+A       A+I E +G D +D             +N  
Sbjct: 63  LEEERPVAVQLGGSDPE-LLAEA-------AKIAEELGADIID-------------LN-- 99

Query: 137 NFRVPFVCGCRNLGESLR--RIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGD------I 188
                  CGC     S +  +   GAA+++         IV+A+      +GD      I
Sbjct: 100 -------CGCP----SPKVVKGGAGAALLKNPELLA--EIVKAMV---EAVGDIPVTVKI 143

Query: 189 RVLRNMDDDEVFTFAKNIA---------------------APYDLVMQTKQ-LGRLPVVH 226
           R+  + DD      A+ +                      A +D + + K+ +  +PV  
Sbjct: 144 RLGWDDDDILALEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPV-- 201

Query: 227 FAAGGVATPADA-AMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEV 284
            A G + +  DA  M+   G DGV +G G    G+P    R I    T    P  LAEV
Sbjct: 202 IANGDIKSLEDAKEMLEYTGADGVMIGRGAL--GNPW-LFRQIDYLETGELLPPTLAEV 257

Length = 323

>gnl|CDD|223429 COG0352, ThiE, Thiamine monophosphate synthase [Coenzyme metabolism]

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ 270
           + + + ++L  +PVV  A GG+    +   +++ G DGV V S +  + DP   A+A+  
Sbjct: 148 EGLREIRELVNIPVV--AIGGI-NLENVPEVLEAGADGVAVVSAITSAADPAAAAKALRN 204

Query: 271 AVTNY 275
           A+ + 
Sbjct: 205 ALEDE 209

Length = 211

>gnl|CDD|240080 cd04729, NanE, N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 2/44 (4%)

Query: 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253
           ++L+ + ++   +PV+  A G + +P  AA  ++LG D V VGS
Sbjct: 166 FELLKELRKALGIPVI--AEGRINSPEQAAKALELGADAVVVGS 207

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. Length = 219

>gnl|CDD|129820 TIGR00737, nifR3_yhdG, putative TIM-barrel protein, nifR3 family

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 208 APYDLVMQTKQLGRLPVVHFAAGGVATPADA-AMMMQLGCDGVFVGSGV 255
           A +D++ + KQ  R+PV     G + +P DA AM+   GCDGV +G G 
Sbjct: 179 ANWDIIARVKQAVRIPV--IGNGDIFSPEDAKAMLETTGCDGVMIGRGA 225

This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase [Unknown function, General]. Length = 319

>gnl|CDD|239200 cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain

 Score = 37.5 bits (88), Expect = 0.004
 Identities = 46/197 (23%), Positives = 71/197 (36%), Gaps = 74/197 (37%)

Query: 95  VMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLR 154
            +A+A       A+I+E +G D +D             +N          GC        
Sbjct: 68  TLAEA-------AKIVEELGADGID-------------LN---------MGC-----PSP 93

Query: 155 RIRE---GAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRV---LRNMDDDEVFT--FAKNI 206
           ++ +   GAA+++         IV AVR        I V   +R   DDE  T   AK +
Sbjct: 94  KVTKGGAGAALLKDPELVA--EIVRAVREA----VPIPVTVKIRLGWDDEEETLELAKAL 147

Query: 207 A---------------------APYDLVMQTKQLGRLPVVHFAAGGVATPADA-AMMMQL 244
                                 A +D + + K+   +PV   A G + +  DA   + Q 
Sbjct: 148 EDAGASALTVHGRTREQRYSGPADWDYIAEIKEAVSIPV--IANGDIFSLEDALRCLEQT 205

Query: 245 GCDGVFVGSGVFKSGDP 261
           G DGV +G G    G+P
Sbjct: 206 GVDGVMIGRGAL--GNP 220

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. Length = 231

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	310
KOG1606	296	consensus Stationary phase-induced protein, SOR/SN	100.0
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	100.0
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	100.0
COG0214	296	SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta	100.0
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	100.0
COG0134	254	TrpC Indole-3-glycerol phosphate synthase [Amino a	100.0
PLN02460	338	indole-3-glycerol-phosphate synthase	100.0
PF00218	254	IGPS: Indole-3-glycerol phosphate synthase; InterP	100.0
PRK13957	247	indole-3-glycerol-phosphate synthase; Provisional	100.0
PRK09427	454	bifunctional indole-3-glycerol phosphate synthase/	99.98
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	99.98
PRK13802	695	bifunctional indole-3-glycerol phosphate synthase/	99.97
PF01680	208	SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p	99.96
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	99.96
KOG4201	289	consensus Anthranilate synthase component II [Amin	99.95
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	99.88
COG3010	229	NanE Putative N-acetylmannosamine-6-phosphate epim	99.85
COG0352	211	ThiE Thiamine monophosphate synthase [Coenzyme met	99.82
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	99.75
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	99.74
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	99.73
PRK06512	221	thiamine-phosphate pyrophosphorylase; Provisional	99.7
PRK03512	211	thiamine-phosphate pyrophosphorylase; Provisional	99.69
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	99.68
PRK02615	347	thiamine-phosphate pyrophosphorylase; Provisional	99.68
PRK12290	437	thiE thiamine-phosphate pyrophosphorylase; Reviewe	99.67
PRK14024	241	phosphoribosyl isomerase A; Provisional	99.67
COG0107	256	HisF Imidazoleglycerol-phosphate synthase [Amino a	99.66
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	99.65
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	99.65
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	99.65
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	99.64
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	99.64
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	99.64
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	99.61
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	99.61
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	99.6
PF05690	247	ThiG: Thiazole biosynthesis protein ThiG; InterPro	99.59
TIGR02129	253	hisA_euk phosphoribosylformimino-5-aminoimidazole	99.59
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	99.59
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	99.59
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	99.58
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	99.58
PRK00208	250	thiG thiazole synthase; Reviewed	99.58
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	99.58
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	99.57
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	99.57
PRK07695	201	transcriptional regulator TenI; Provisional	99.56
CHL00162	267	thiG thiamin biosynthesis protein G; Validated	99.56
TIGR00693	196	thiE thiamine-phosphate pyrophosphorylase. This mo	99.55
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	99.54
PLN02334	229	ribulose-phosphate 3-epimerase	99.52
PRK08883	220	ribulose-phosphate 3-epimerase; Provisional	99.51
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	99.51
PLN02617	538	imidazole glycerol phosphate synthase hisHF	99.5
PLN02898	502	HMP-P kinase/thiamin-monophosphate pyrophosphoryla	99.5
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	99.49
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	99.49
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	99.49
COG2022	262	ThiG Uncharacterized enzyme of thiazole biosynthes	99.48
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	99.48
cd00564	196	TMP_TenI Thiamine monophosphate synthase (TMP synt	99.48
PF02581	180	TMP-TENI: Thiamine monophosphate synthase/TENI; In	99.46
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	99.46
PRK04302	223	triosephosphate isomerase; Provisional	99.46
PRK09517	755	multifunctional thiamine-phosphate pyrophosphoryla	99.45
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	99.45
PRK05581	220	ribulose-phosphate 3-epimerase; Validated	99.44
TIGR00734	221	hisAF_rel hisA/hisF family protein. This alignment	99.43
PRK08745	223	ribulose-phosphate 3-epimerase; Provisional	99.43
COG0036	220	Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate	99.41
COG0042	323	tRNA-dihydrouridine synthase [Translation, ribosom	99.41
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	99.41
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	99.4
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	99.4
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	99.4
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	99.4
PF03060	330	NMO: Nitronate monooxygenase; InterPro: IPR004136	99.39
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	99.39
PRK08999	312	hypothetical protein; Provisional	99.38
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	99.37
PLN02591	250	tryptophan synthase	99.37
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	99.34
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	99.32
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	99.31
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	99.29
PRK08005	210	epimerase; Validated	99.28
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	99.28
PF01207	309	Dus: Dihydrouridine synthase (Dus); InterPro: IPR0	99.28
COG0159	265	TrpA Tryptophan synthase alpha chain [Amino acid t	99.26
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	99.25
PRK08091	228	ribulose-phosphate 3-epimerase; Validated	99.25
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	99.25
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	99.24
PTZ00170	228	D-ribulose-5-phosphate 3-epimerase; Provisional	99.24
PRK09722	229	allulose-6-phosphate 3-epimerase; Provisional	99.24
COG0269	217	SgbH 3-hexulose-6-phosphate synthase and related p	99.23
cd04743	320	NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma	99.22
TIGR00742	318	yjbN tRNA dihydrouridine synthase A. Members of th	99.22
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	99.21
PRK14057	254	epimerase; Provisional	99.21
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	99.2
COG2070	336	Dioxygenases related to 2-nitropropane dioxygenase	99.19
KOG2335	358	consensus tRNA-dihydrouridine synthase [Translatio	99.18
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	99.18
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	99.18
cd00405	203	PRAI Phosphoribosylanthranilate isomerase (PRAI) c	99.17
PF00290	259	Trp_syntA: Tryptophan synthase alpha chain; InterP	99.16
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	99.16
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	99.15
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	99.14
PF03437	254	BtpA: BtpA family; InterPro: IPR005137 Photosystem	99.14
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	99.13
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	99.13
PLN02274	505	inosine-5'-monophosphate dehydrogenase	99.12
COG0434	263	SgcQ Predicted TIM-barrel enzyme [General function	99.12
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	99.12
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	99.1
PRK07114	222	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	99.1
PRK13307	391	bifunctional formaldehyde-activating enzyme/3-hexu	99.09
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	99.09
PRK05096	346	guanosine 5'-monophosphate oxidoreductase; Provisi	99.08
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	99.08
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	99.05
KOG3111	224	consensus D-ribulose-5-phosphate 3-epimerase [Carb	99.03
TIGR00259	257	thylakoid_BtpA membrane complex biogenesis protein	99.03
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	99.02
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	99.01
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	98.99
PF00834	201	Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam	98.99
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	98.98
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	98.98
PRK07226	267	fructose-bisphosphate aldolase; Provisional	98.98
cd04742	418	NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom	98.97
COG0800	211	Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca	98.97
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	98.96
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	98.96
PF04481	242	DUF561: Protein of unknown function (DUF561); Inte	98.96
cd02911	233	arch_FMN Archeal FMN-binding domain. This family o	98.95
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	98.94
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	98.93
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	98.92
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.89
PRK06806	281	fructose-bisphosphate aldolase; Provisional	98.89
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	98.88
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	98.86
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	98.86
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.85
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	98.81
TIGR01859	282	fruc_bis_ald_ fructose-1,6-bisphosphate aldolase,	98.8
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.76
COG1830	265	FbaB DhnA-type fructose-1,6-bisphosphate aldolase	98.75
PLN02495	385	oxidoreductase, acting on the CH-CH group of donor	98.73
TIGR02814	444	pfaD_fam PfaD family protein. The protein PfaD is	98.72
PRK07315	293	fructose-bisphosphate aldolase; Provisional	98.71
cd04741	294	DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c	98.67
PRK04169	232	geranylgeranylglyceryl phosphate synthase-like pro	98.65
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	98.65
PRK08227	264	autoinducer 2 aldolase; Validated	98.64
COG0167	310	PyrD Dihydroorotate dehydrogenase [Nucleotide tran	98.61
PRK13306	216	ulaD 3-keto-L-gulonate-6-phosphate decarboxylase;	98.61
PRK06852	304	aldolase; Validated	98.59
KOG4175	268	consensus Tryptophan synthase alpha chain [Amino a	98.59
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	98.55
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	98.53
cd04738	327	DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl	98.52
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	98.51
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	98.48
PRK02506	310	dihydroorotate dehydrogenase 1A; Reviewed	98.47
PRK13813	215	orotidine 5'-phosphate decarboxylase; Provisional	98.47
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	98.46
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	98.43
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	98.42
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	98.41
PLN02535	364	glycolate oxidase	98.4
TIGR00078	265	nadC nicotinate-nucleotide pyrophosphorylase. Syno	98.39
cd04734	343	OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN	98.39
KOG0623	541	consensus Glutamine amidotransferase/cyclase [Amin	98.36
cd01572	268	QPRTase Quinolinate phosphoribosyl transferase (QA	98.36
PRK08072	277	nicotinate-nucleotide pyrophosphorylase; Provision	98.35
PLN02826	409	dihydroorotate dehydrogenase	98.35
PRK13523	337	NADPH dehydrogenase NamA; Provisional	98.35
cd04735	353	OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN	98.33
cd01568	269	QPRTase_NadC Quinolinate phosphoribosyl transferas	98.33
PLN02979	366	glycolate oxidase	98.33
TIGR01768	223	GGGP-family geranylgeranylglyceryl phosphate synth	98.31
PRK05742	277	nicotinate-nucleotide pyrophosphorylase; Provision	98.3
cd01573	272	modD_like ModD; Quinolinate phosphoribosyl transfe	98.29
PRK05848	273	nicotinate-nucleotide pyrophosphorylase; Provision	98.29
PRK07428	288	nicotinate-nucleotide pyrophosphorylase; Provision	98.29
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	98.28
TIGR01036	335	pyrD_sub2 dihydroorotate dehydrogenase, subfamily	98.28
PRK06801	286	hypothetical protein; Provisional	98.28
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	98.26
TIGR01769	205	GGGP geranylgeranylglyceryl phosphate synthase. Th	98.25
PF01070	356	FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR	98.17
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	98.16
COG1646	240	Predicted phosphate-binding enzymes, TIM-barrel fo	98.16
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	98.16
cd02933	338	OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind	98.11
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	98.1
PF01180	295	DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP	98.1
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	98.07
PRK09250	348	fructose-bisphosphate aldolase; Provisional	98.07
PRK00230	230	orotidine 5'-phosphate decarboxylase; Reviewed	98.06
cd02932	336	OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN	98.06
PRK01222	210	N-(5'-phosphoribosyl)anthranilate isomerase; Provi	98.05
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	98.05
PF01729	169	QRPTase_C: Quinolinate phosphoribosyl transferase,	98.02
PRK13305	218	sgbH 3-keto-L-gulonate-6-phosphate decarboxylase;	98.02
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	98.01
cd02931	382	ER_like_FMN Enoate reductase (ER)-like FMN-binding	97.98
COG0135	208	TrpF Phosphoribosylanthranilate isomerase [Amino a	97.94
cd02930	353	DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin	97.91
TIGR01334	277	modD putative molybdenum utilization protein ModD.	97.91
cd04733	338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	97.89
PRK13958	207	N-(5'-phosphoribosyl)anthranilate isomerase; Provi	97.89
PRK07896	289	nicotinate-nucleotide pyrophosphorylase; Provision	97.86
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	97.85
PRK08185	283	hypothetical protein; Provisional	97.85
COG1411	229	Uncharacterized protein related to proFAR isomeras	97.84
cd02929	370	TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH)	97.84
KOG0538	363	consensus Glycolate oxidase [Energy production and	97.83
PRK08385	278	nicotinate-nucleotide pyrophosphorylase; Provision	97.82
cd02812	219	PcrB_like PcrB_like proteins. One member of this f	97.8
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	97.79
PRK06978	294	nicotinate-nucleotide pyrophosphorylase; Provision	97.78
PF09370	268	TIM-br_sig_trns: TIM-barrel signal transduction pr	97.78
PRK09016	296	quinolinate phosphoribosyltransferase; Validated	97.77
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.74
PRK09427	454	bifunctional indole-3-glycerol phosphate synthase/	97.72
PRK06559	290	nicotinate-nucleotide pyrophosphorylase; Provision	97.69
cd02808	392	GltS_FMN Glutamate synthase (GltS) FMN-binding dom	97.67
PF01884	230	PcrB: PcrB family; InterPro: IPR008205 This entry	97.66
PRK06096	284	molybdenum transport protein ModD; Provisional	97.64
PRK00507	221	deoxyribose-phosphate aldolase; Provisional	97.63
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	97.63
PLN02363	256	phosphoribosylanthranilate isomerase	97.62
PRK06106	281	nicotinate-nucleotide pyrophosphorylase; Provision	97.62
COG1902	363	NemA NADH:flavin oxidoreductases, Old Yellow Enzym	97.61
PRK06543	281	nicotinate-nucleotide pyrophosphorylase; Provision	97.59
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.58
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	97.56
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	97.54
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.52
PRK07998	283	gatY putative fructose-1,6-bisphosphate aldolase;	97.52
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	97.5
cd00956	211	Transaldolase_FSA Transaldolase-like fructose-6-ph	97.49
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.45
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.42
PRK11572	248	copper homeostasis protein CutC; Provisional	97.41
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	97.4
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	97.38
COG0107	256	HisF Imidazoleglycerol-phosphate synthase [Amino a	97.37
TIGR02129	253	hisA_euk phosphoribosylformimino-5-aminoimidazole	97.37
COG0157	280	NadC Nicotinate-nucleotide pyrophosphorylase [Coen	97.35
TIGR01740	213	pyrF orotidine 5'-phosphate decarboxylase, subfami	97.35
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	97.33
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.33
PF03932	201	CutC: CutC family; InterPro: IPR005627 Copper tran	97.3
PLN02716	308	nicotinate-nucleotide diphosphorylase (carboxylati	97.29
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.28
PRK14024	241	phosphoribosyl isomerase A; Provisional	97.28
cd04747	361	OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN	97.21
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	97.2
PRK07114	222	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.19
cd00377	243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	97.18
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	97.18
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	97.17
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	97.16
PLN02617	538	imidazole glycerol phosphate synthase hisHF	97.16
PF00697	197	PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isome	97.15
COG0149	251	TpiA Triosephosphate isomerase [Carbohydrate trans	97.14
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.14
PRK12737	284	gatY tagatose-bisphosphate aldolase; Reviewed	97.14
TIGR00126	211	deoC deoxyribose-phosphate aldolase. Deoxyribose-p	97.12
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	97.11
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	97.11
TIGR01858	282	tag_bisphos_ald class II aldolase, tagatose bispho	97.1
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.1
PRK12738	286	kbaY tagatose-bisphosphate aldolase; Reviewed	97.1
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	97.1
PRK09195	284	gatY tagatose-bisphosphate aldolase; Reviewed	97.08
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	97.06
PF01645	368	Glu_synthase: Conserved region in glutamate syntha	97.06
cd04725	216	OMP_decarboxylase_like Orotidine 5'-phosphate deca	97.02
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	97.01
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	96.99
PRK12857	284	fructose-1,6-bisphosphate aldolase; Reviewed	96.98
TIGR00167	288	cbbA ketose-bisphosphate aldolases. fructose-bisph	96.96
PRK10605	362	N-ethylmaleimide reductase; Provisional	96.94
COG0800	211	Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca	96.93
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	96.93
PRK07709	285	fructose-bisphosphate aldolase; Provisional	96.93
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	96.91
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	96.9
PRK12656	222	fructose-6-phosphate aldolase; Reviewed	96.89
PRK08610	286	fructose-bisphosphate aldolase; Reviewed	96.88
COG1304	360	idi Isopentenyl diphosphate isomerase (BS_ypgA, MT	96.87
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	96.87
TIGR02317	285	prpB methylisocitrate lyase. Members of this famil	96.86
cd00947	276	TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a	96.85
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	96.85
COG0274	228	DeoC Deoxyribose-phosphate aldolase [Nucleotide tr	96.84
PRK05096	346	guanosine 5'-monophosphate oxidoreductase; Provisi	96.8
TIGR00875	213	fsa_talC_mipB fructose-6-phosphate aldolase, TalC/	96.79
PF13714	238	PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB	96.77
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	96.77
PRK12858	340	tagatose 1,6-diphosphate aldolase; Reviewed	96.77
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	96.76
PRK01362	214	putative translaldolase; Provisional	96.75
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	96.74
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	96.74
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	96.73
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	96.72
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	96.7
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	96.68
COG2513	289	PrpB PEP phosphonomutase and related enzymes [Carb	96.63
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	96.56
PF01116	287	F_bP_aldolase: Fructose-bisphosphate aldolase clas	96.55
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	96.54
PRK00042	250	tpiA triosephosphate isomerase; Provisional	96.54
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	96.5
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	96.49
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	96.48
TIGR00419	205	tim triosephosphate isomerase. Triosephosphate iso	96.48
PRK07084	321	fructose-bisphosphate aldolase; Provisional	96.46
PRK14565	237	triosephosphate isomerase; Provisional	96.46
PRK13803	610	bifunctional phosphoribosylanthranilate isomerase/	96.43
PRK05283	257	deoxyribose-phosphate aldolase; Provisional	96.42
TIGR02319	294	CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos	96.4
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	96.39
PRK02227	238	hypothetical protein; Provisional	96.38
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	96.38
KOG2333	614	consensus Uncharacterized conserved protein [Gener	96.37
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	96.37
PLN02979	366	glycolate oxidase	96.35
cd06556	240	ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup	96.34
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	96.32
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	96.3
cd02911	233	arch_FMN Archeal FMN-binding domain. This family o	96.28
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	96.26
PRK10128	267	2-keto-3-deoxy-L-rhamnonate aldolase; Provisional	96.25
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	96.22
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	96.19
PRK00208	250	thiG thiazole synthase; Reviewed	96.18
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	96.1
PF00215	226	OMPdecase: Orotidine 5'-phosphate decarboxylase /	96.1
CHL00162	267	thiG thiamin biosynthesis protein G; Validated	96.09
PRK05835	307	fructose-bisphosphate aldolase; Provisional	96.04
PRK12653	220	fructose-6-phosphate aldolase; Reviewed	96.04
cd00311	242	TIM Triosephosphate isomerase (TIM) is a glycolyti	96.04
PF05690	247	ThiG: Thiazole biosynthesis protein ThiG; InterPro	95.99
PRK14567	253	triosephosphate isomerase; Provisional	95.98
COG3142	241	CutC Uncharacterized protein involved in copper re	95.96
COG0042	323	tRNA-dihydrouridine synthase [Translation, ribosom	95.95
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	95.91
PRK10558	256	alpha-dehydro-beta-deoxy-D-glucarate aldolase; Pro	95.9
PRK12655	220	fructose-6-phosphate aldolase; Reviewed	95.85
PTZ00333	255	triosephosphate isomerase; Provisional	95.84
cd01571	302	NAPRTase_B Nicotinate phosphoribosyltransferase (N	95.83
COG0191	286	Fba Fructose/tagatose bisphosphate aldolase [Carbo	95.8
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	95.79
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	95.77
PLN02429	315	triosephosphate isomerase	95.68
TIGR03239	249	GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co	95.68
PRK12376	236	putative translaldolase; Provisional	95.67
PF04309	175	G3P_antiterm: Glycerol-3-phosphate responsive anti	95.65
COG2876	286	AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (	95.64
PLN02274	505	inosine-5'-monophosphate dehydrogenase	95.6
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	95.55
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	95.45
COG3010	229	NanE Putative N-acetylmannosamine-6-phosphate epim	95.4
PRK13396	352	3-deoxy-7-phosphoheptulonate synthase; Provisional	95.39
PRK13957	247	indole-3-glycerol-phosphate synthase; Provisional	95.38
PF00701	289	DHDPS: Dihydrodipicolinate synthetase family; Inte	95.35
PRK09196	347	fructose-1,6-bisphosphate aldolase; Reviewed	95.34
COG5564	276	Predicted TIM-barrel enzyme, possibly a dioxygenas	95.34
cd00408	281	DHDPS-like Dihydrodipicolinate synthase family. A	95.33
PRK13399	347	fructose-1,6-bisphosphate aldolase; Provisional	95.33
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	95.3
PRK14905	355	triosephosphate isomerase/PTS system glucose/sucro	95.22
TIGR02320	285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	95.21
PRK11750	1485	gltB glutamate synthase subunit alpha; Provisional	95.17
COG0069	485	GltB Glutamate synthase domain 2 [Amino acid trans	95.0
PRK08508	279	biotin synthase; Provisional	94.98
TIGR01769	205	GGGP geranylgeranylglyceryl phosphate synthase. Th	94.95
cd02812	219	PcrB_like PcrB_like proteins. One member of this f	94.93
PF04476	235	DUF556: Protein of unknown function (DUF556); Inte	94.92
cd06557	254	KPHMT-like Ketopantoate hydroxymethyltransferase (	94.88
COG2022	262	ThiG Uncharacterized enzyme of thiazole biosynthes	94.87
cd00516	281	PRTase_typeII Phosphoribosyltransferase (PRTase) t	94.83
PRK08673	335	3-deoxy-7-phosphoheptulonate synthase; Reviewed	94.79
PF00724	341	Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox	94.78
PF01207	309	Dus: Dihydrouridine synthase (Dus); InterPro: IPR0	94.6
COG4981	717	Enoyl reductase domain of yeast-type FAS1 [Lipid m	94.54
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	94.53
PRK13397	250	3-deoxy-7-phosphoheptulonate synthase; Provisional	94.5
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	94.48
COG0269	217	SgbH 3-hexulose-6-phosphate synthase and related p	94.32
COG0329	299	DapA Dihydrodipicolinate synthase/N-acetylneuramin	94.29
PRK00311	264	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	94.29
TIGR02134	236	transald_staph transaldolase. This small family of	94.26
TIGR02321	290	Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f	94.23
COG0502	335	BioB Biotin synthase and related enzymes [Coenzyme	94.21
cd00951	289	KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also	94.19
PRK02227	238	hypothetical protein; Provisional	94.17
PLN02411	391	12-oxophytodienoate reductase	94.11
PRK06256	336	biotin synthase; Validated	94.04
COG2089	347	SpsE Sialic acid synthase [Cell envelope biogenesi	94.04
PLN02561	253	triosephosphate isomerase	94.0
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	93.98
COG1954	181	GlpP Glycerol-3-phosphate responsive antiterminato	93.94
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	93.92
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	93.9
PRK08662	343	nicotinate phosphoribosyltransferase; Reviewed	93.9
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	93.86
TIGR02313	294	HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac	93.86
PRK12595	360	bifunctional 3-deoxy-7-phosphoheptulonate synthase	93.78
KOG2334	477	consensus tRNA-dihydrouridine synthase [Translatio	93.75
TIGR00742	318	yjbN tRNA dihydrouridine synthase A. Members of th	93.65
TIGR00284	499	dihydropteroate synthase-related protein. This pro	93.57
PF03740	239	PdxJ: Pyridoxal phosphate biosynthesis protein Pdx	93.56
TIGR01768	223	GGGP-family geranylgeranylglyceryl phosphate synth	93.44
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	93.41
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	93.39
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	93.39
PF04476	235	DUF556: Protein of unknown function (DUF556); Inte	93.33
COG0284	240	PyrF Orotidine-5'-phosphate decarboxylase [Nucleot	93.25
TIGR00674	285	dapA dihydrodipicolinate synthase. Dihydrodipicoli	93.22
PRK07188	352	nicotinate phosphoribosyltransferase; Provisional	93.22
TIGR01361	260	DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate	93.13
PRK03620	303	5-dehydro-4-deoxyglucarate dehydratase; Provisiona	93.09
cd08205	367	RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l	93.08
TIGR02319	294	CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos	93.07
PLN02858	1378	fructose-bisphosphate aldolase	92.87
TIGR03249	296	KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh	92.85
PRK04147	293	N-acetylneuraminate lyase; Provisional	92.84
TIGR02317	285	prpB methylisocitrate lyase. Members of this famil	92.81
PF01487	224	DHquinase_I: Type I 3-dehydroquinase; InterPro: IP	92.76
COG2513	289	PrpB PEP phosphonomutase and related enzymes [Carb	92.72
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	92.51
TIGR01521	347	FruBisAldo_II_B fructose-bisphosphate aldolase, cl	92.48
PRK05500	477	bifunctional orotidine 5'-phosphate decarboxylase/	92.45
TIGR00222	263	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	92.36
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	92.24
PRK15452	443	putative protease; Provisional	92.14
TIGR00734	221	hisAF_rel hisA/hisF family protein. This alignment	92.14
cd08209	391	RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopent	92.12
PRK09197	350	fructose-bisphosphate aldolase; Provisional	92.07
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	91.97
PRK12331	448	oxaloacetate decarboxylase; Provisional	91.9
TIGR01362	258	KDO8P_synth 3-deoxy-8-phosphooctulonate synthase.	91.85
PF13714	238	PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB	91.78
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	91.75
PRK05848	273	nicotinate-nucleotide pyrophosphorylase; Provision	91.67
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	91.65
KOG2335	358	consensus tRNA-dihydrouridine synthase [Translatio	91.64
COG0329	299	DapA Dihydrodipicolinate synthase/N-acetylneuramin	91.64
PRK15492	260	triosephosphate isomerase; Provisional	91.64
PRK05265	239	pyridoxine 5'-phosphate synthase; Provisional	91.61
PRK05198	264	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	91.58
COG2185	143	Sbm Methylmalonyl-CoA mutase, C-terminal domain/su	91.53
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	91.44
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	91.29
cd00954	288	NAL N-Acetylneuraminic acid aldolase, also called	91.28
PF00218	254	IGPS: Indole-3-glycerol phosphate synthase; InterP	91.17
COG0826	347	Collagenase and related proteases [Posttranslation	91.14
PRK13398	266	3-deoxy-7-phosphoheptulonate synthase; Provisional	91.09
PF03932	201	CutC: CutC family; InterPro: IPR005627 Copper tran	91.02
PLN02424	332	ketopantoate hydroxymethyltransferase	91.0
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	90.98
cd04733	338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	90.96
PRK11613	282	folP dihydropteroate synthase; Provisional	90.94
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	90.93
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	90.88
cd04741	294	DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c	90.88
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	90.86
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	90.76
PRK11572	248	copper homeostasis protein CutC; Provisional	90.59
PRK03170	292	dihydrodipicolinate synthase; Provisional	90.47
TIGR03326	412	rubisco_III ribulose bisphosphate carboxylase, typ	90.46
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	90.43
cd00003	234	PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase	90.42
cd04738	327	DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl	90.42
TIGR00559	237	pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req	90.4
TIGR02311	249	HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola	90.4
PRK07535	261	methyltetrahydrofolate:corrinoid/iron-sulfur prote	90.36
cd08210	364	RLP_RrRLP Ribulose bisphosphate carboxylase like p	90.25
PLN02460	338	indole-3-glycerol-phosphate synthase	90.16
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	90.08
cd00423	258	Pterin_binding Pterin binding enzymes. This family	90.07
TIGR00640	132	acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal	89.95
COG0352	211	ThiE Thiamine monophosphate synthase [Coenzyme met	89.83
cd00956	211	Transaldolase_FSA Transaldolase-like fructose-6-ph	89.78
PRK12457	281	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	89.76
COG5016	472	Pyruvate/oxaloacetate carboxyltransferase [Energy	89.73
cd00946	345	FBP_aldolase_IIA Class II Type A, Fructose-1,6-bis	89.72
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	89.71
PRK09549	407	mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate eno	89.67

>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]

Probab=100.00  E-value=2.5e-52  Score=356.74  Aligned_cols=296  Identities=82%  Similarity=1.251  Sum_probs=286.9

Q ss_pred             EEEeccCCCccccccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcc
Q 037779           15 IYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIP   94 (310)
Q Consensus        15 i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lP   94 (310)
                      |.|-|.+|||+.++++.|+|+||.|+++.++++|+.++++||++++.|+++|.|+|..+|..+++++..|++|++++.+|
T Consensus         1 ~t~a~~k~pfsvK~GLAQmLkGGvImdVv~~eQA~iAE~aGACaVmalervPadiR~~GgV~RMsDP~mIKei~~aVsiP   80 (296)
T KOG1606|consen    1 ITEAKFKSPFSVKVGLAQMLKGGVIMDVVNAEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPRMIKEIKNAVSIP   80 (296)
T ss_pred             CccccccCCchhhHHHHHHhcCCeEEEecCHHHHHHHHhcCcceEeeeccCCHhHHhcCCeeecCCHHHHHHHHHhccch
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEeeccccchHHHHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCch
Q 037779           95 VMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNI  174 (310)
Q Consensus        95 v~~kd~i~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~  174 (310)
                      |+.|.+++||.++|++++.|+|+|..++.+++.+....+.+|.+.+++++++++.-|+.+-++.||.+|.+.|+.+|+++
T Consensus        81 VMAk~RiGHFVEAQIlE~l~vDYiDESEvlt~AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~EGAAMIRtkGeagTG~v  160 (296)
T KOG1606|consen   81 VMAKVRIGHFVEAQILEALGVDYIDESEVLTPADWDHHIEKHNFKVPFVCGCRDLGEALRRIREGAAMIRTKGEAGTGDV  160 (296)
T ss_pred             hhhhhhhhhhhHHHHHHHhccCccchhhhcccccccchhhhhcCcCceeeccccHHHHHHHHhhchhhheeccccCCCcH
Confidence            99999999999999999999999998899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccc
Q 037779          175 VEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG  254 (310)
Q Consensus       175 ~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsa  254 (310)
                      .+++++.+++..+++.+..+++|.++.+++.+..|++++++.++..++||+-+|+||+.||.|+.-++++|||||.|||.
T Consensus       161 ~EaVkhvr~i~geir~~~~m~~dev~t~Ak~i~aP~dLv~~t~q~GrlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSg  240 (296)
T KOG1606|consen  161 SEAVKHVRSINGEIRVLKNMDDDEVFTFAKEIAAPYDLVKQTKQLGRLPVVNFAAGGVATPADAALMMQLGCDGVFVGSG  240 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCcHHHHHHHHHcCCCceEEecccCcCChhHHHHHHHcCCCeEEeccc
Confidence            99999999999999999999999998888888899999999999999999999999999999999999999999999999


Q ss_pred             cccCCCHHHHHHHHHHHHHcCCChhhHHhhhhccCCceeccccccchhhhhhccCC
Q 037779          255 VFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVERYANRSD  310 (310)
Q Consensus       255 i~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  310 (310)
                      |+++.||.+.++++.+++.+|.+|.++.|+++.+|+.|.|+++++.++++|+|+|.
T Consensus       241 iFks~dP~k~a~aiVqAvthy~dp~~L~evS~~Lg~aM~g~~i~~~~~~~f~ngs~  296 (296)
T KOG1606|consen  241 IFKSGDPVKRARAIVQAVTHYDDPAKLAEVSSGLGEAMVGISIQSIKEARFANGSR  296 (296)
T ss_pred             cccCCCHHHHHHHHHHHHHccCCHHHHHHHhccHHHHhhcccccchhhhhccccCC
Confidence            99999999999999999999999999999999999999999999999999999973

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=100.00  E-value=2e-45  Score=330.78  Aligned_cols=282  Identities=68%  Similarity=1.052  Sum_probs=256.1

Q ss_pred             cccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHH
Q 037779           27 KVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVE  106 (310)
Q Consensus        27 ~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~  106 (310)
                      +.++.+||+||.|+++.++++|+.++++||.+++.|+++|.|+|..+|..++++++.|++|++.+++||+.+.+++|+.+
T Consensus         2 k~~~a~~~kggvimdv~~~eqa~iae~aga~avm~le~~p~d~r~~ggv~R~~~p~~I~~I~~~V~iPVig~~kigh~~E   81 (287)
T TIGR00343         2 KKGLAQMLKGGVIMDVVNPEQAKIAEEAGAVAVMALERVPADIRASGGVARMSDPKMIKEIMDAVSIPVMAKVRIGHFVE   81 (287)
T ss_pred             chhHHHHhcCCeEEEeCCHHHHHHHHHcCceEEEeeccCchhhHhcCCeeecCCHHHHHHHHHhCCCCEEEEeeccHHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCeeeecCCCChh-HHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhh
Q 037779          107 AQILEAIGVDYVDESEVLTPA-DEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVM  185 (310)
Q Consensus       107 ~~~~~~aGad~v~~~~~~~~~-~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~  185 (310)
                      ++.+.++|+|+|..+..+.|. ++...++.+ ++++++++++|+.|+.++.+.|+|+|++.+.+||++..+++++.+.+.
T Consensus        82 a~~L~~~GvDiIDeTe~lrPade~~~~~K~~-f~vpfmad~~~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~  160 (287)
T TIGR00343        82 AQILEALGVDYIDESEVLTPADWTFHIDKKK-FKVPFVCGARDLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKIN  160 (287)
T ss_pred             HHHHHHcCCCEEEccCCCCcHHHHHHHHHHH-cCCCEEccCCCHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHH
Confidence            999999999999877766664 455555444 499999999999999999999999999999999999999999999999


Q ss_pred             cceeccccc-CchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHH
Q 037779          186 GDIRVLRNM-DDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRR  264 (310)
Q Consensus       186 ~~~~~l~~~-~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~  264 (310)
                      .+.+.+..+ +.+.+..+++...+++++++++.+..++||+-||+|||+||+++..++++||+||+|||+|++++||...
T Consensus       161 ~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~  240 (287)
T TIGR00343       161 EEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKL  240 (287)
T ss_pred             HHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHH
Confidence            988777655 3344554555667899999999998789996448999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCChhhHHhhhhccCCceeccccccchh-hhhhccC
Q 037779          265 ARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKV-ERYANRS  309 (310)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  309 (310)
                      +++|++++.+|.+|++++|+++.+|++|.||+....+- ||++.|.
T Consensus       241 akafv~ai~~~~~~~~~~e~s~~~~~~m~g~~~~~~~~~~~~~~r~  286 (287)
T TIGR00343       241 AKAIVEATTHYDNPEKLAEVSKDLGEAMKGISISSISEAERLQERG  286 (287)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHccccccCCCCccccCCHHHHhhhcC
Confidence            99999999999999999999999999999999998875 7888885

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=100.00  E-value=1.9e-44  Score=325.36  Aligned_cols=288  Identities=72%  Similarity=1.104  Sum_probs=258.4

Q ss_pred             CCCccccccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecc
Q 037779           21 KSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKAR  100 (310)
Q Consensus        21 ~sp~~~~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~  100 (310)
                      .++++.+.++.+||+||.|+++.+++.|+.++++|+++|..+..||.|.+..+|..++.++++|++|++.+++||+.+.+
T Consensus         3 ~~~~~~k~g~a~m~kggvimdv~~~~~a~iae~~g~~~v~~~~~~psd~~~~gg~~Rm~~p~~I~aIk~~V~iPVigk~R   82 (293)
T PRK04180          3 TGTERVKRGFAEMLKGGVIMDVVNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIEEIMDAVSIPVMAKAR   82 (293)
T ss_pred             CccHHHHHHHHHHhcCCeEEEeCCHHHHHHHHHhChHHHHHccCCCchHhhcCCeeecCCHHHHHHHHHhCCCCeEEeeh
Confidence            45677889999999999999999999999999999999844449999999999999999999999999999999999999


Q ss_pred             ccchHHHHHHHHcCCCeeeecCCCChhH-HHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHH
Q 037779          101 IGHFVEAQILEAIGVDYVDESEVLTPAD-EENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVR  179 (310)
Q Consensus       101 i~~~~~~~~~~~aGad~v~~~~~~~~~~-~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~  179 (310)
                      ++|+.+++.+.++|+|+|..+..+.|.+ +...++ +.++++++++++|+.|+.++.++|+|+|++.|+.+||+..++++
T Consensus        83 igh~~Ea~~L~~~GvDiID~Te~lrpad~~~~~~K-~~f~~~fmad~~~l~EAlrai~~GadmI~Ttge~gtg~v~~av~  161 (293)
T PRK04180         83 IGHFVEAQILEALGVDYIDESEVLTPADEEYHIDK-WDFTVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVR  161 (293)
T ss_pred             hhHHHHHHHHHHcCCCEEeccCCCCchHHHHHHHH-HHcCCCEEccCCCHHHHHHHHHCCCCeeeccCCCCCccHHHHHH
Confidence            9999999999999999998776666643 444444 34599999999999999999999999999999999999999999


Q ss_pred             HHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          180 HVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       180 ~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                      +.|.+..+++.+...+.+.....++...+++++++.+++..++||+-|++|||+||+++..++++||++|+|||+|++++
T Consensus       162 h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~  241 (293)
T PRK04180        162 HMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSG  241 (293)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCC
Confidence            99999999888887776655433444567899999999987899964488999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCChhhHHhhhhccCCceeccccccch-hhhhhccC
Q 037779          260 DPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVK-VERYANRS  309 (310)
Q Consensus       260 dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  309 (310)
                      ||.+.+++|++++.+|.+|.+++|+++.+|++|.||+..+.+ -|+++.|.
T Consensus       242 dP~~~akafv~ai~~~~~~~~~~~~s~~~~~~m~g~~~~~~~~~~~~~~r~  292 (293)
T PRK04180        242 DPEKRARAIVEATTHYDDPEVLAEVSKGLGEAMVGIDIDELPPEERLQERG  292 (293)
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHcccccccCCCccccCCHHHHhhhcC
Confidence            999999999999999999999999999999999999999875 57888775

>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]

Probab=100.00  E-value=9.6e-45  Score=314.25  Aligned_cols=284  Identities=73%  Similarity=1.123  Sum_probs=269.6

Q ss_pred             cccccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccch
Q 037779           25 SVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHF  104 (310)
Q Consensus        25 ~~~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~  104 (310)
                      ..+.++.+|+++|.|+++.++++|+.++++||.+++.|+++|.|+|.-+|..++.++..+++|-+++.+||+.|.+|+|+
T Consensus        10 ~vK~g~a~m~KGGVIMDV~n~EQA~IAE~aGAvAVMaLervPaDiR~aGGVaRMaDp~~i~eim~aVsIPVMAKvRIGH~   89 (296)
T COG0214          10 RVKRGFAQMLKGGVIMDVVNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIEEIMDAVSIPVMAKVRIGHF   89 (296)
T ss_pred             HHHhhHHHHhcCCeEEEecCHHHHHHHHhcCceeEeehhhCcHHHHhccCccccCCHHHHHHHHHhcccceeeeeecchh
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHh
Q 037779          105 VEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSV  184 (310)
Q Consensus       105 ~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~  184 (310)
                      .+++++++.|+|+|..++.++|.+..-.+.+..+.++++++++|+-|+.+-+..||..|.+.|+.+||++.+++++.+.+
T Consensus        90 ~EA~iLealgVD~IDESEVLTPAD~~~Hi~K~~FtVPFVcGarnLgEAlRRI~EGAaMIRTKGEaGTGnv~eAVrHmr~i  169 (296)
T COG0214          90 VEAQILEALGVDMIDESEVLTPADEEFHINKWKFTVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRKI  169 (296)
T ss_pred             HHHHHHHHhCCCccccccccCCCchhhhcchhhcccceecCcCcHHHHHHHHhhhHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence            99999999999999999999999988888887788999999999999999999999999999999999999999999999


Q ss_pred             hcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHH
Q 037779          185 MGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRR  264 (310)
Q Consensus       185 ~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~  264 (310)
                      ..+++.+..++.|.+...++++..|++++..+.+..++||+-+++|||.||.|+.-.+++|||||.|||.||+++||.++
T Consensus       170 ~~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~grLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS~~P~~~  249 (296)
T COG0214         170 NGEIRRLQSMTEDELYVVAKELQAPYELVKEVAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKR  249 (296)
T ss_pred             HHHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHhCCCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCCCCHHHH
Confidence            99999888888888876678888999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCChhhHHhhhhccCCceeccccccchh-hhhhcc
Q 037779          265 ARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKV-ERYANR  308 (310)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  308 (310)
                      ++++.++..+|.+|+++++++..+|++|.||+.++++- +|++.|
T Consensus       250 A~AIV~A~~~yddp~~laevs~~lg~~M~Gi~i~~l~~~~rlq~R  294 (296)
T COG0214         250 AKAIVEATTHYDDPEVLAEVSEGLGEAMKGIDISELPEEERLQER  294 (296)
T ss_pred             HHHHHHHHHccCCHHHHHHHHHHhccccCCCChhhCCHHHHHHhc
Confidence            99999999999999999999999999999999999875 566655

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=100.00  E-value=4.8e-41  Score=302.44  Aligned_cols=279  Identities=72%  Similarity=1.114  Sum_probs=250.3

Q ss_pred             cceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHH
Q 037779           29 GLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQ  108 (310)
Q Consensus        29 ~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~  108 (310)
                      ++.+||++|.|+++.++++|+.++++||.+++.|+++|.|+|..+|..+++.+++|++|++.+++||+.+.+.+|+.+++
T Consensus         2 ~~~~~~~~g~~~~v~~~~qa~~ae~aga~~v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V~iPVIGi~K~~~~~Ea~   81 (283)
T cd04727           2 GFAQMLKGGVIMDVTNAEQARIAEEAGAVAVMALERVPADIRAAGGVARMADPKMIKEIMDAVSIPVMAKVRIGHFVEAQ   81 (283)
T ss_pred             cHHHHhcCCeEEEeCCHHHHHHHHHcCceEEeeeccCchhhhhcCCeeecCCHHHHHHHHHhCCCCeEEeeehhHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999889999


Q ss_pred             HHHHcCCCeeeecCCCCh-hHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcc
Q 037779          109 ILEAIGVDYVDESEVLTP-ADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGD  187 (310)
Q Consensus       109 ~~~~aGad~v~~~~~~~~-~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~  187 (310)
                      .+.++|+|.|..+..+.| .++...++.++ ++++++++.|++|+.++.++|+|+|++.+..||++..+++++.+.++..
T Consensus        82 ~L~eaGvDiIDaT~r~rP~~~~~~~iK~~~-~~l~MAD~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~  160 (283)
T cd04727          82 ILEALGVDMIDESEVLTPADEEHHIDKHKF-KVPFVCGARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGE  160 (283)
T ss_pred             HHHHcCCCEEeccCCCCcHHHHHHHHHHHc-CCcEEccCCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHH
Confidence            999999999975555444 56777776654 9999999999999999999999999999999999999999999999999


Q ss_pred             eecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHH
Q 037779          188 IRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARA  267 (310)
Q Consensus       188 ~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~  267 (310)
                      ++.+...+.+..+.+++...+++++++.+.+..++||+.||+|||+||+++.+++++||++|+|||+|++++||...+++
T Consensus       161 i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~  240 (283)
T cd04727         161 IRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARA  240 (283)
T ss_pred             HHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHH
Confidence            88777776655433333346789999999998789996447899999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCChhhHHhhhhccCCceeccccccchh-hhhhcc
Q 037779          268 IVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKV-ERYANR  308 (310)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  308 (310)
                      |++.++.|.+|.++.|+++.+|++|.|+++...|. ||+..|
T Consensus       241 f~~ai~~~~~~~~~~e~~~~~~~~m~~~~~~~~~~~~~~~~~  282 (283)
T cd04727         241 IVEAVTHYDDPEILAEVSEGLGEAMVGIDIASLKEEERMQER  282 (283)
T ss_pred             HHHHHHhcCCHHHHHHHHcccccCCCCcccccCCHHHHhccC
Confidence            99999999999999999999999999999988665 455443

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=4.6e-35  Score=261.86  Aligned_cols=205  Identities=27%  Similarity=0.393  Sum_probs=175.2

Q ss_pred             ecceEEEEeccCCCccccccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHH
Q 037779           10 YGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIK   88 (310)
Q Consensus        10 ~~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~   88 (310)
                      .++++|+|+||+|||+           |.|....+| ++|+.|+++||.+||+|    ||+++|.|+     ++.++.++
T Consensus        44 ~~~~vIAEvKkaSPS~-----------G~ir~d~dp~~ia~~Ye~~GAa~iSVL----Td~~~F~Gs-----~e~L~~v~  103 (254)
T COG0134          44 GKPAVIAEVKKASPSK-----------GLIREDFDPVEIAKAYEEGGAAAISVL----TDPKYFQGS-----FEDLRAVR  103 (254)
T ss_pred             CCceEEEEeecCCCCC-----------CcccccCCHHHHHHHHHHhCCeEEEEe----cCccccCCC-----HHHHHHHH
Confidence            4789999999999999           999988886 68999999999999999    999999999     99999999


Q ss_pred             hhcCcceEeeccccchHHHHHHHH--cCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEE
Q 037779           89 SSVTIPVMAKARIGHFVEAQILEA--IGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIR  164 (310)
Q Consensus        89 ~~~~lPv~~kd~i~~~~~~~~~~~--aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~  164 (310)
                      +.+++||++|||+.+  ++|+..+  +|||.|+ +...++..++.+.+.. +..|+.+++++||.+|++++.+.|+++|+
T Consensus       104 ~~v~~PvL~KDFiiD--~yQI~~Ar~~GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~~ga~iIG  181 (254)
T COG0134         104 AAVDLPVLRKDFIID--PYQIYEARAAGADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALKLGAKIIG  181 (254)
T ss_pred             HhcCCCeeeccCCCC--HHHHHHHHHcCcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHhCCCCEEE
Confidence            999999999999984  5555544  9999998 6677777777777766 67899999999999999999999999999


Q ss_pred             EecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc
Q 037779          165 TKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL  244 (310)
Q Consensus       165 v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~  244 (310)
                      +|.                     |++.+++.|        +....++.+.+++.    ++.|+++||++++|+.++.+.
T Consensus       182 INn---------------------RdL~tf~vd--------l~~t~~la~~~p~~----~~~IsESGI~~~~dv~~l~~~  228 (254)
T COG0134         182 INN---------------------RDLTTLEVD--------LETTEKLAPLIPKD----VILISESGISTPEDVRRLAKA  228 (254)
T ss_pred             EeC---------------------CCcchheec--------HHHHHHHHhhCCCC----cEEEecCCCCCHHHHHHHHHc
Confidence            995                     355555432        23345565555542    444899999999999999999


Q ss_pred             CCCEEEEccccccCCCHHHHHHHHH
Q 037779          245 GCDGVFVGSGVFKSGDPVRRARAIV  269 (310)
Q Consensus       245 GadgV~VGsai~~~~dp~~~~~~~~  269 (310)
                      |++|++||++||+++||.+.++++.
T Consensus       229 ga~a~LVG~slM~~~~~~~a~~~l~  253 (254)
T COG0134         229 GADAFLVGEALMRADDPEEALRELL  253 (254)
T ss_pred             CCCEEEecHHHhcCCCHHHHHHHhh
Confidence            9999999999999999988888764

>PLN02460 indole-3-glycerol-phosphate synthase

Probab=100.00  E-value=9.6e-35  Score=269.73  Aligned_cols=204  Identities=25%  Similarity=0.347  Sum_probs=174.2

Q ss_pred             ceEEEEeccCCCccccccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhh
Q 037779           12 NGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSS   90 (310)
Q Consensus        12 ~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~   90 (310)
                      +++|+|+||+|||+           |.|++..+| ++|+.|+++||.+||+|    ||.++|+|+     ++.++++|+.
T Consensus       119 ~~vIAEvKrASPSk-----------G~I~~~~dp~~iA~~Ye~~GA~aISVL----Td~~~F~Gs-----~e~L~~vr~~  178 (338)
T PLN02460        119 PGLIAEVKKASPSR-----------GVLRENFDPVEIAQAYEKGGAACLSVL----TDEKYFQGS-----FENLEAIRNA  178 (338)
T ss_pred             cceEeeeccCCCCC-----------CccCCCCCHHHHHHHHHhCCCcEEEEe----cCcCcCCCC-----HHHHHHHHHc
Confidence            79999999999999           999998886 78999999999999999    999999999     9999999998


Q ss_pred             -cCcceEeeccccchHHHHHHHH--cCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHh-CCCEEE
Q 037779           91 -VTIPVMAKARIGHFVEAQILEA--IGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIRE-GAAMIR  164 (310)
Q Consensus        91 -~~lPv~~kd~i~~~~~~~~~~~--aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~-Gad~I~  164 (310)
                       +++||++|||+.  +.+|++++  +|||.|+ +...+++.++..++.. +..|+.+++++||.+|++++.+. |+++|+
T Consensus       179 ~v~lPvLrKDFII--D~yQI~eAr~~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH~~~ElerAl~~~ga~iIG  256 (338)
T PLN02460        179 GVKCPLLCKEFIV--DAWQIYYARSKGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVHDEREMDRVLGIEGVELIG  256 (338)
T ss_pred             CCCCCEeeccccC--CHHHHHHHHHcCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEE
Confidence             999999999998  46676666  9999998 7778887777777766 77899999999999999999998 999999


Q ss_pred             EecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHH-----HHHhcCCCCEEEEccCCCCCHHHHH
Q 037779          165 TKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVM-----QTKQLGRLPVVHFAAGGVATPADAA  239 (310)
Q Consensus       165 v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~-----~i~~~~~iPVv~ia~GGI~t~~di~  239 (310)
                      +|+                     |++.+++.|        +....++.+     .++. .  -++.|+++||+|++|+.
T Consensus       257 INN---------------------RdL~Tf~vD--------l~~t~~L~~~~~~~~i~~-~--~~~~VsESGI~t~~Dv~  304 (338)
T PLN02460        257 INN---------------------RSLETFEVD--------ISNTKKLLEGERGEQIRE-K--GIIVVGESGLFTPDDVA  304 (338)
T ss_pred             EeC---------------------CCCCcceEC--------HHHHHHHhhhccccccCC-C--CeEEEECCCCCCHHHHH
Confidence            995                     356665432        222444544     2211 1  24447999999999999


Q ss_pred             HHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 037779          240 MMMQLGCDGVFVGSGVFKSGDPVRRARAIV  269 (310)
Q Consensus       240 ~~~~~GadgV~VGsai~~~~dp~~~~~~~~  269 (310)
                      .+.++|+|+|+||++||+++||...+++|.
T Consensus       305 ~l~~~GadAvLVGEsLMr~~dp~~~l~~L~  334 (338)
T PLN02460        305 YVQNAGVKAVLVGESLVKQDDPGKGIAGLF  334 (338)
T ss_pred             HHHHCCCCEEEECHHHhCCCCHHHHHHHHh
Confidence            999999999999999999999999888875

>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4

Probab=100.00  E-value=2.4e-34  Score=259.94  Aligned_cols=206  Identities=27%  Similarity=0.372  Sum_probs=160.8

Q ss_pred             ecceEEEEeccCCCccccccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHH
Q 037779           10 YGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIK   88 (310)
Q Consensus        10 ~~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~   88 (310)
                      .+.++|+|+||+|||+           |.+....++ ++|+.|.++||++||++    ||+++|+|+     ++++..++
T Consensus        46 ~~~~vIAEiKraSPs~-----------G~i~~~~d~~~~a~~y~~~GA~aiSVl----Te~~~F~Gs-----~~dL~~v~  105 (254)
T PF00218_consen   46 GRISVIAEIKRASPSK-----------GDIREDFDPAEIAKAYEEAGAAAISVL----TEPKFFGGS-----LEDLRAVR  105 (254)
T ss_dssp             SS-EEEEEE-SEETTT-----------EESBSS-SHHHHHHHHHHTT-SEEEEE------SCCCHHH-----HHHHHHHH
T ss_pred             CCCeEEEEeecCCCCC-----------CccCccCCHHHHHHHHHhcCCCEEEEE----CCCCCCCCC-----HHHHHHHH
Confidence            5689999999999999           999998886 78999999999999999    999999999     99999999


Q ss_pred             hhcCcceEeeccccchHHHHHHHHcCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEe
Q 037779           89 SSVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus        89 ~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                      +.+++|+++|||+.+..++.....+|||.|+ +...+++.++.+++.. +..|+.+++++||.+|++++.+.|+++|++|
T Consensus       106 ~~~~~PvL~KDFIid~~QI~eA~~~GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~~~El~~al~~~a~iiGIN  185 (254)
T PF00218_consen  106 KAVDLPVLRKDFIIDPYQIYEARAAGADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHNEEELERALEAGADIIGIN  185 (254)
T ss_dssp             HHSSS-EEEES---SHHHHHHHHHTT-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTT-SEEEEE
T ss_pred             HHhCCCcccccCCCCHHHHHHHHHcCCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECCHHHHHHHHHcCCCEEEEe
Confidence            9999999999999853333344449999998 7777777777777766 6789999999999999999999999999999


Q ss_pred             cCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCC
Q 037779          167 GEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGC  246 (310)
Q Consensus       167 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~Ga  246 (310)
                      .                     |++.++..|        .....++.+.+++  +  ++.|++|||++++|+.++..+|+
T Consensus       186 n---------------------RdL~tf~vd--------~~~~~~l~~~ip~--~--~~~iseSGI~~~~d~~~l~~~G~  232 (254)
T PF00218_consen  186 N---------------------RDLKTFEVD--------LNRTEELAPLIPK--D--VIVISESGIKTPEDARRLARAGA  232 (254)
T ss_dssp             S---------------------BCTTTCCBH--------THHHHHHHCHSHT--T--SEEEEESS-SSHHHHHHHCTTT-
T ss_pred             C---------------------ccccCcccC--------hHHHHHHHhhCcc--c--eeEEeecCCCCHHHHHHHHHCCC
Confidence            4                     355665533        2224556666664  2  34479999999999999999999


Q ss_pred             CEEEEccccccCCCHHHHHHHH
Q 037779          247 DGVFVGSGVFKSGDPVRRARAI  268 (310)
Q Consensus       247 dgV~VGsai~~~~dp~~~~~~~  268 (310)
                      |||+||++||+++||.+.++++
T Consensus       233 davLVGe~lm~~~d~~~~~~~L  254 (254)
T PF00218_consen  233 DAVLVGEALMRSPDPGEALREL  254 (254)
T ss_dssp             SEEEESHHHHTSSSHHHHHHHH
T ss_pred             CEEEECHHHhCCCCHHHHHhcC
Confidence            9999999999999999988765

1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....

>PRK13957 indole-3-glycerol-phosphate synthase; Provisional

Probab=100.00  E-value=7.5e-33  Score=248.35  Aligned_cols=204  Identities=20%  Similarity=0.261  Sum_probs=172.9

Q ss_pred             cceEEEEeccCCCccccccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHh
Q 037779           11 GNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS   89 (310)
Q Consensus        11 ~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~   89 (310)
                      +.++|+|+||+|||+           |.+....++ ++|+.|+++||.+||++    ||.++|+|+     .++++.+++
T Consensus        40 ~~~vIaEiKr~SPs~-----------G~i~~~~d~~~~A~~y~~~GA~aISVl----Te~~~F~Gs-----~~~l~~v~~   99 (247)
T PRK13957         40 SFSIIAECKRKSPSA-----------GELRADYHPVQIAKTYETLGASAISVL----TDQSYFGGS-----LEDLKSVSS   99 (247)
T ss_pred             CCeEEEEEecCCCCC-----------CCcCCCCCHHHHHHHHHHCCCcEEEEE----cCCCcCCCC-----HHHHHHHHH
Confidence            479999999999999           999987776 79999999999999999    999999999     999999999


Q ss_pred             hcCcceEeeccccchHHHHHHHHcCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEec
Q 037779           90 SVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTKG  167 (310)
Q Consensus        90 ~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g  167 (310)
                      .+++||++|||+.+..++.....+|||.|+ +...+++.++.+++.. +..|+.+++++||.+|++++.+.|+++|++|.
T Consensus       100 ~v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINn  179 (247)
T PRK13957        100 ELKIPVLRKDFILDEIQIREARAFGASAILLIVRILTPSQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINT  179 (247)
T ss_pred             hcCCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeC
Confidence            999999999999964444444459999998 7777777778877776 77899999999999999999999999999995


Q ss_pred             CCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCC
Q 037779          168 EAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCD  247 (310)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~Gad  247 (310)
                      +                     ++.++..|        .....++.+.+++  +.  +.|++|||+|++|+.++... +|
T Consensus       180 R---------------------dL~t~~vd--------~~~~~~L~~~ip~--~~--~~IsESGI~t~~d~~~l~~~-~d  225 (247)
T PRK13957        180 R---------------------DLDTFQIH--------QNLVEEVAAFLPP--NI--VKVGESGIESRSDLDKFRKL-VD  225 (247)
T ss_pred             C---------------------CCccceEC--------HHHHHHHHhhCCC--Cc--EEEEcCCCCCHHHHHHHHHh-CC
Confidence            4                     55555432        2334666666654  22  33789999999999999887 99


Q ss_pred             EEEEccccccCCCHHHHHHHH
Q 037779          248 GVFVGSGVFKSGDPVRRARAI  268 (310)
Q Consensus       248 gV~VGsai~~~~dp~~~~~~~  268 (310)
                      ||+||+++|+++||.+.+++|
T Consensus       226 avLvG~~lm~~~d~~~~~~~l  246 (247)
T PRK13957        226 AALIGTYFMEKKDIRKAWLSL  246 (247)
T ss_pred             EEEECHHHhCCCCHHHHHHHh
Confidence            999999999999999888775

>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional

Probab=99.98  E-value=1.3e-31  Score=260.44  Aligned_cols=230  Identities=23%  Similarity=0.254  Sum_probs=188.5

Q ss_pred             cceEEEEeccCCCccccccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHh
Q 037779           11 GNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS   89 (310)
Q Consensus        11 ~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~   89 (310)
                      ++++|+|+||+|||+           |.+....+| ++|+.| +.||++||+|    ||.++|+|+     +++++.+++
T Consensus        49 ~~~vIaEiKraSPs~-----------G~i~~~~d~~~~a~~y-~~gA~aiSVl----Te~~~F~Gs-----~~~l~~vr~  107 (454)
T PRK09427         49 KTAFILECKKASPSK-----------GLIRDDFDPAEIARVY-KHYASAISVL----TDEKYFQGS-----FDFLPIVRA  107 (454)
T ss_pred             CCceEEEeecCCCCC-----------CccCCCCCHHHHHHHH-HcCCeEEEEe----cCcCcCCCC-----HHHHHHHHH
Confidence            579999999999999           999988886 789999 8889999999    999999999     999999999


Q ss_pred             hcCcceEeeccccchHHHHHHHH--cCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEE
Q 037779           90 SVTIPVMAKARIGHFVEAQILEA--IGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRT  165 (310)
Q Consensus        90 ~~~lPv~~kd~i~~~~~~~~~~~--aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v  165 (310)
                      .+++||++|||+.+  ++|++++  +|||.|+ +...+++.++.+++.. +..|+.+++++||.+|++++.+.|+++|++
T Consensus       108 ~v~~PvLrKDFiid--~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~~al~~~a~iiGi  185 (454)
T PRK09427        108 IVTQPILCKDFIID--PYQIYLARYYGADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELERAIALGAKVIGI  185 (454)
T ss_pred             hCCCCEEeccccCC--HHHHHHHHHcCCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHhCCCCEEEE
Confidence            99999999999985  5555555  9999998 7777777777777766 678999999999999999999999999999


Q ss_pred             ecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC
Q 037779          166 KGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG  245 (310)
Q Consensus       166 ~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G  245 (310)
                      |++                     ++.+++-|        .....++.+.+++  ++  +.|++|||+|++|+..+.. |
T Consensus       186 NnR---------------------dL~t~~vd--------~~~~~~l~~~ip~--~~--~~vseSGI~t~~d~~~~~~-~  231 (454)
T PRK09427        186 NNR---------------------NLRDLSID--------LNRTRELAPLIPA--DV--IVISESGIYTHAQVRELSP-F  231 (454)
T ss_pred             eCC---------------------CCccceEC--------HHHHHHHHhhCCC--Cc--EEEEeCCCCCHHHHHHHHh-c
Confidence            953                     55665432        2335667666664  23  3478999999999999765 7


Q ss_pred             CCEEEEccccccCCCHHHHHHHHHHHHHc--CCChhhHHhhhhccCCceecccc
Q 037779          246 CDGVFVGSGVFKSGDPVRRARAIVQAVTN--YSDPDVLAEVSCGLGEAMVGIDL  297 (310)
Q Consensus       246 adgV~VGsai~~~~dp~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  297 (310)
                      +|||+||++||+++||.+.+++|....-+  +..-.--.+.+...|.++.|+.|
T Consensus       232 ~davLiG~~lm~~~d~~~~~~~L~~~~vKICGit~~eda~~a~~~GaD~lGfIf  285 (454)
T PRK09427        232 ANGFLIGSSLMAEDDLELAVRKLILGENKVCGLTRPQDAKAAYDAGAVYGGLIF  285 (454)
T ss_pred             CCEEEECHHHcCCCCHHHHHHHHhccccccCCCCCHHHHHHHHhCCCCEEeeEe
Confidence            99999999999999999999988664111  01112235567778999999986

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=99.98  E-value=8.2e-31  Score=239.38  Aligned_cols=205  Identities=23%  Similarity=0.338  Sum_probs=169.9

Q ss_pred             cceEEEEeccCCCccccccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHh
Q 037779           11 GNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS   89 (310)
Q Consensus        11 ~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~   89 (310)
                      +.++|+|+||+||++           |++....++ ++|+.|.++||++|+++    ||+++|+|+     +++++.+++
T Consensus        49 ~~~vIaeik~~sps~-----------g~i~~~~~~~~~A~~~~~~GA~aisvl----te~~~f~g~-----~~~l~~v~~  108 (260)
T PRK00278         49 KPAVIAEVKKASPSK-----------GVIREDFDPVEIAKAYEAGGAACLSVL----TDERFFQGS-----LEYLRAARA  108 (260)
T ss_pred             CCeEEEEeeCCCCCC-----------CccCCCCCHHHHHHHHHhCCCeEEEEe----cccccCCCC-----HHHHHHHHH
Confidence            379999999999999           999988885 79999999999999988    999999988     999999999


Q ss_pred             hcCcceEeeccccchHHHHHHHHcCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEec
Q 037779           90 SVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTKG  167 (310)
Q Consensus        90 ~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g  167 (310)
                      .+++||+++||+.+..+++.+.++|||.|+ +...+++..+.+.+.. +..|+.+++++||.+|++++.++|+|+|++|+
T Consensus       109 ~v~iPvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l~~~~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~gadiIgin~  188 (260)
T PRK00278        109 AVSLPVLRKDFIIDPYQIYEARAAGADAILLIVAALDDEQLKELLDYAHSLGLDVLVEVHDEEELERALKLGAPLIGINN  188 (260)
T ss_pred             hcCCCEEeeeecCCHHHHHHHHHcCCCEEEEEeccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEECC
Confidence            999999999999866677788889999998 4444566666666665 56789999999999999999999999999984


Q ss_pred             CCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-C-CCCEEEEccCCCCCHHHHHHHHHcC
Q 037779          168 EAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-G-RLPVVHFAAGGVATPADAAMMMQLG  245 (310)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~-~iPVv~ia~GGI~t~~di~~~~~~G  245 (310)
                      +                     ++.++.            .+.+....+.+. . ..|+  |++|||+|++++.+++++|
T Consensus       189 r---------------------dl~~~~------------~d~~~~~~l~~~~p~~~~v--IaegGI~t~ed~~~~~~~G  233 (260)
T PRK00278        189 R---------------------NLKTFE------------VDLETTERLAPLIPSDRLV--VSESGIFTPEDLKRLAKAG  233 (260)
T ss_pred             C---------------------Cccccc------------CCHHHHHHHHHhCCCCCEE--EEEeCCCCHHHHHHHHHcC
Confidence            3                     222222            123333333332 1 2466  6789999999999999999


Q ss_pred             CCEEEEccccccCCCHHHHHHHHHH
Q 037779          246 CDGVFVGSGVFKSGDPVRRARAIVQ  270 (310)
Q Consensus       246 adgV~VGsai~~~~dp~~~~~~~~~  270 (310)
                      +|+|+|||+||+++||.+.+++|..
T Consensus       234 ad~vlVGsaI~~~~dp~~~~~~l~~  258 (260)
T PRK00278        234 ADAVLVGESLMRADDPGAALRELLG  258 (260)
T ss_pred             CCEEEECHHHcCCCCHHHHHHHHhc
Confidence            9999999999999999999888753

>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

Probab=99.97  E-value=6.4e-31  Score=265.78  Aligned_cols=208  Identities=26%  Similarity=0.342  Sum_probs=178.5

Q ss_pred             ceEEEEeccCCCccccccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhh
Q 037779           12 NGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSS   90 (310)
Q Consensus        12 ~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~   90 (310)
                      .+||+|+||+|||+           |.|.+..++ ++|+.|+++||++||+|    ||.++|+|+     +++++.+++.
T Consensus        50 ~~vIaEiKraSPs~-----------G~i~~~~d~~~~a~~y~~~GA~aiSVl----Te~~~F~Gs-----~~~l~~vr~~  109 (695)
T PRK13802         50 IPVIAEIKRASPSK-----------GHLSDIPDPAALAREYEQGGASAISVL----TEGRRFLGS-----LDDFDKVRAA  109 (695)
T ss_pred             CeEEEEeecCCCCC-----------CcCCCCCCHHHHHHHHHHcCCcEEEEe----cCcCcCCCC-----HHHHHHHHHh
Confidence            68999999999999           999988786 78999999999999999    999999999     9999999999


Q ss_pred             cCcceEeeccccchHHHHHHHH--cCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEe
Q 037779           91 VTIPVMAKARIGHFVEAQILEA--IGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus        91 ~~lPv~~kd~i~~~~~~~~~~~--aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                      +++||++|||+.+  ++|++++  +|||.|+ +...++..++.+++.. +..|+.+++++||.+|++++.+.|+++|++|
T Consensus       110 v~~PvLrKDFIid--~~QI~ea~~~GADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGIN  187 (695)
T PRK13802        110 VHIPVLRKDFIVT--DYQIWEARAHGADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGIN  187 (695)
T ss_pred             CCCCEEeccccCC--HHHHHHHHHcCCCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEe
Confidence            9999999999985  5555554  9999998 7777777777777766 6789999999999999999999999999999


Q ss_pred             cCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCC
Q 037779          167 GEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGC  246 (310)
Q Consensus       167 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~Ga  246 (310)
                      .                     |++.++..|        +....++.+.+++  ++  +.|+++||++++|+..+.++|+
T Consensus       188 n---------------------RdL~tf~vd--------~~~t~~L~~~ip~--~~--~~VsESGI~~~~d~~~l~~~G~  234 (695)
T PRK13802        188 A---------------------RNLKDLKVD--------VNKYNELAADLPD--DV--IKVAESGVFGAVEVEDYARAGA  234 (695)
T ss_pred             C---------------------CCCccceeC--------HHHHHHHHhhCCC--Cc--EEEEcCCCCCHHHHHHHHHCCC
Confidence            5                     456665432        2335667666654  23  3378999999999999999999


Q ss_pred             CEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          247 DGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       247 dgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      |+|+||++||+++||...+++|..+-..
T Consensus       235 davLIGeslm~~~dp~~~~~~l~~~~~~  262 (695)
T PRK13802        235 DAVLVGEGVATADDHELAVERLVKAGAR  262 (695)
T ss_pred             CEEEECHHhhCCCCHHHHHHHHHhcccc
Confidence            9999999999999999999998766433

>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []

Probab=99.96  E-value=1.8e-29  Score=211.03  Aligned_cols=204  Identities=78%  Similarity=1.208  Sum_probs=171.6

Q ss_pred             cccccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccch
Q 037779           25 SVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHF  104 (310)
Q Consensus        25 ~~~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~  104 (310)
                      ..+.++.+||+||.|+++.++++|+.++++||.+++.|+++|.|+|.-+|..+|+++..|++|.+++.+||+.|.++||+
T Consensus         4 ~~k~gla~mlkGGVIMDV~n~eQAkIAE~AGA~AVMaLervPadiR~~GGVaRMsDP~~I~eI~~aVsIPVMAK~RIGHf   83 (208)
T PF01680_consen    4 RVKRGLAQMLKGGVIMDVTNAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMSDPKMIKEIMDAVSIPVMAKVRIGHF   83 (208)
T ss_dssp             HHHHHHHHTTTTEEEEEESSHHHHHHHHHHT-SEEEE-SS-HHHHHHTTS---S--HHHHHHHHHH-SSEEEEEEETT-H
T ss_pred             hHHhhHHHHhcCCeEEEecCHHHHHHHHHhCCeEEEEeccCCHhHHhcCCccccCCHHHHHHHHHheEeceeecccccee
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHh
Q 037779          105 VEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSV  184 (310)
Q Consensus       105 ~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~  184 (310)
                      .++|++++.|+|+|..++.++|.+-...+.++.+.++++++++|+-|+.+-+..||.+|.+.|+.+||+..+++++.+.+
T Consensus        84 vEAqiLealgVD~IDESEVLTpAD~~~HI~K~~F~vPFVcGarnLGEALRRI~EGAaMIRtKGEaGTGnvveAVrH~R~i  163 (208)
T PF01680_consen   84 VEAQILEALGVDYIDESEVLTPADEENHIDKHNFKVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRTI  163 (208)
T ss_dssp             HHHHHHHHTT-SEEEEETTS--S-SS----GGG-SS-EEEEESSHHHHHHHHHTT-SEEEEETTTTST-THHHHHHHHHH
T ss_pred             ehhhhHHHhCCceeccccccccccccccccchhCCCCeEecCCCHHHHHhhHHhhhhhhcccCCCCCCcHHHHHHHHHHH
Confidence            99999999999999999999999888889888899999999999999999999999999999999999999999999999


Q ss_pred             hcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEc
Q 037779          185 MGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFA  228 (310)
Q Consensus       185 ~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia  228 (310)
                      +.+++.+..++.|.+..+++.+..|++++.++++..++||+-++
T Consensus       164 ~~eI~~l~~~~~~el~~~Ak~~~ap~eLv~~~~~~grLPVvnFa  207 (208)
T PF01680_consen  164 NGEIRRLQNMDDEELFAFAKEIGAPYELVKEVAELGRLPVVNFA  207 (208)
T ss_dssp             HHHHHHHHTS-HHHHHHHHHHHTCGHHHHHHHHHHTSSSSEEEE
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHCCCHHHHHHHHHHCCCCcccCC
Confidence            99999999999999988888889999999999999999997553

Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=99.96  E-value=8.8e-28  Score=213.94  Aligned_cols=203  Identities=22%  Similarity=0.323  Sum_probs=165.9

Q ss_pred             cceEEEEeccCCCccccccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHh
Q 037779           11 GNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS   89 (310)
Q Consensus        11 ~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~   89 (310)
                      +.++|+|+||+||+.           |.+....++ ++|+.|.++||++|+..    ++...|+|+     ++.++.+++
T Consensus        10 ~~~vIae~k~~sp~~-----------~~~~~~~~~~~~A~~~~~~GA~~l~v~----~~~~~~~g~-----~~~~~~i~~   69 (217)
T cd00331          10 GLGVIAEVKRASPSK-----------GLIREDFDPVEIAKAYEKAGAAAISVL----TEPKYFQGS-----LEDLRAVRE   69 (217)
T ss_pred             CceEEEEecCCCCCC-----------CcCCCCCCHHHHHHHHHHcCCCEEEEE----eCccccCCC-----HHHHHHHHH
Confidence            379999999999999           999888886 89999999999999876    667777777     899999999


Q ss_pred             hcCcceEeeccccchHHHHHHHHcCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEec
Q 037779           90 SVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTKG  167 (310)
Q Consensus        90 ~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g  167 (310)
                      .+++||++++++.+..+++.+.++|||+|+ ....+++..+.+.++. ...++.+++++++.+|++++.+.|++++++++
T Consensus        70 ~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~~~~g~~~~v~v~~~~e~~~~~~~g~~~i~~t~  149 (217)
T cd00331          70 AVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELARELGMEVLVEVHDEEELERALALGAKIIGINN  149 (217)
T ss_pred             hcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHcCCCEEEEeC
Confidence            999999999988765688999999999998 3444455555555554 44688889999999999999999999999874


Q ss_pred             CCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcC
Q 037779          168 EAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLG  245 (310)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~G  245 (310)
                      ...+                     .            ...+.+.+..+.+.  .++|+  +++|||++++|+.+++++|
T Consensus       150 ~~~~---------------------~------------~~~~~~~~~~l~~~~~~~~pv--ia~gGI~s~edi~~~~~~G  194 (217)
T cd00331         150 RDLK---------------------T------------FEVDLNTTERLAPLIPKDVIL--VSESGISTPEDVKRLAEAG  194 (217)
T ss_pred             CCcc---------------------c------------cCcCHHHHHHHHHhCCCCCEE--EEEcCCCCHHHHHHHHHcC
Confidence            3211                     1            12234566666654  35788  6789999999999999999


Q ss_pred             CCEEEEccccccCCCHHHHHHHH
Q 037779          246 CDGVFVGSGVFKSGDPVRRARAI  268 (310)
Q Consensus       246 adgV~VGsai~~~~dp~~~~~~~  268 (310)
                      ++||+|||+|++..||.+.+++|
T Consensus       195 a~gvivGsai~~~~~p~~~~~~~  217 (217)
T cd00331         195 ADAVLIGESLMRAPDPGAALREL  217 (217)
T ss_pred             CCEEEECHHHcCCCCHHHHHHhC
Confidence            99999999999999998887653

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]

Probab=99.95  E-value=1e-27  Score=206.16  Aligned_cols=205  Identities=22%  Similarity=0.276  Sum_probs=171.4

Q ss_pred             cceEEEEeccCCCccccccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHh
Q 037779           11 GNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS   89 (310)
Q Consensus        11 ~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~   89 (310)
                      .+|+|+|.||+|||+           |.+....++ ++|..|.++||.+||+|    ||++||.|+     ++++..+|+
T Consensus        70 ~p~liAEVKrASPSk-----------G~ik~d~~~ae~A~~Yak~GAs~iSVL----Te~k~FkGs-----ledL~~irk  129 (289)
T KOG4201|consen   70 RPGLIAEVKRASPSK-----------GIIKLDANAAEQALAYAKGGASCISVL----TEPKWFKGS-----LEDLVAIRK  129 (289)
T ss_pred             cchHHHHHhhcCCCC-----------CccccccCHHHHHHHHHhcCceeeeee----cCchhhccc-----HHHHHHHHH
Confidence            589999999999999           999988775 89999999999999999    999999999     888888887


Q ss_pred             hc--Ccc---eEeeccccchHHHHHHHH--cCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCC
Q 037779           90 SV--TIP---VMAKARIGHFVEAQILEA--IGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGA  160 (310)
Q Consensus        90 ~~--~lP---v~~kd~i~~~~~~~~~~~--aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Ga  160 (310)
                      ..  ..|   +++|+|+.  +.+|++++  .|||.|+ +...++..++...++- +..++..++++|+.+|..++++.|+
T Consensus       130 ~~~~k~p~~~lL~KeFiv--d~~QI~~aR~~GADaVLLIvamLs~~~lk~l~k~~K~L~me~LVEVn~~eEm~raleiGa  207 (289)
T KOG4201|consen  130 IAGVKCPPKCLLRKEFIV--DPYQIYEARLKGADAVLLIVAMLSDLLLKELYKISKDLGMEPLVEVNDEEEMQRALEIGA  207 (289)
T ss_pred             HhcCcCChHhHhHHHHcc--CHHHHHHHHhcCCceeehHHHHcChHHHHHHHHHHHHcCCcceeeeccHHHHHHHHHhCc
Confidence            64  467   99999987  57888888  9999998 6666665555555544 5578999999999999999999999


Q ss_pred             CEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHH
Q 037779          161 AMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM  240 (310)
Q Consensus       161 d~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~  240 (310)
                      ..|++|++                     ++.+++.        ++..+..++..+++    .|+.++.+||.||+|+..
T Consensus       208 kvvGvNNR---------------------nL~sFeV--------DlstTskL~E~i~k----Dvilva~SGi~tpdDia~  254 (289)
T KOG4201|consen  208 KVVGVNNR---------------------NLHSFEV--------DLSTTSKLLEGIPK----DVILVALSGIFTPDDIAK  254 (289)
T ss_pred             EEEeecCC---------------------ccceeee--------chhhHHHHHhhCcc----ceEEEeccCCCCHHHHHH
Confidence            99999853                     4555542        34445566666553    455588999999999999


Q ss_pred             HHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 037779          241 MMQLGCDGVFVGSGVFKSGDPVRRARAIVQ  270 (310)
Q Consensus       241 ~~~~GadgV~VGsai~~~~dp~~~~~~~~~  270 (310)
                      ..+.|+.+|+||..+|+..||.+.++++..
T Consensus       255 ~q~~GV~avLVGEslmk~sDp~k~i~eL~~  284 (289)
T KOG4201|consen  255 YQKAGVKAVLVGESLMKQSDPKKFIHELFG  284 (289)
T ss_pred             HHHcCceEEEecHHHHhccCHHHHHHHHhc
Confidence            999999999999999999999988877643

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=99.88  E-value=3.7e-21  Score=164.54  Aligned_cols=174  Identities=27%  Similarity=0.384  Sum_probs=131.6

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccc---c-------chHHHHHHHHcCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARI---G-------HFVEAQILEAIGV  115 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i---~-------~~~~~~~~~~aGa  115 (310)
                      .+|+++.++||.+|          |..+       ++++++|++.+++||+.-...   +       +.+++..+.++|+
T Consensus         3 ~mA~Aa~~gGA~gi----------R~~~-------~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGa   65 (192)
T PF04131_consen    3 RMAKAAEEGGAVGI----------RANG-------VEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGA   65 (192)
T ss_dssp             HHHHHHHHCT-SEE----------EEES-------HHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-
T ss_pred             HHHHHHHHCCceEE----------EcCC-------HHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCC
Confidence            68999999999997          4443       899999999999999873221   1       3478899999999


Q ss_pred             Ceeeec-----CCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceec
Q 037779          116 DYVDES-----EVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRV  190 (310)
Q Consensus       116 d~v~~~-----~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~  190 (310)
                      |.|..+     ...+..++++.+++++  ..++++|.|.+|+..+.++|+|+|++...+|++..                
T Consensus        66 dIIAlDaT~R~Rp~~l~~li~~i~~~~--~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t----------------  127 (192)
T PF04131_consen   66 DIIALDATDRPRPETLEELIREIKEKY--QLVMADISTLEEAINAAELGFDIIGTTLSGYTPYT----------------  127 (192)
T ss_dssp             SEEEEE-SSSS-SS-HHHHHHHHHHCT--SEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTS----------------
T ss_pred             CEEEEecCCCCCCcCHHHHHHHHHHhC--cEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCC----------------
Confidence            999832     1134567777777755  99999999999999999999999999877776531                


Q ss_pred             ccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 037779          191 LRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ  270 (310)
Q Consensus       191 l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~  270 (310)
                                   .+..+++++++.+.+. ++||  |++|+|+||+++.+++++||++|+|||+|++   |...++.|.+
T Consensus       128 -------------~~~~pD~~lv~~l~~~-~~pv--IaEGri~tpe~a~~al~~GA~aVVVGsAITr---P~~It~~F~~  188 (192)
T PF04131_consen  128 -------------KGDGPDFELVRELVQA-DVPV--IAEGRIHTPEQAAKALELGAHAVVVGSAITR---PQEITKRFVD  188 (192)
T ss_dssp             -------------TTSSHHHHHHHHHHHT-TSEE--EEESS--SHHHHHHHHHTT-SEEEE-HHHH----HHHHHHHHHH
T ss_pred             -------------CCCCCCHHHHHHHHhC-CCcE--eecCCCCCHHHHHHHHhcCCeEEEECcccCC---HHHHHHHHHH
Confidence                         0124579999999885 7898  7899999999999999999999999999998   8888999998


Q ss_pred             HHH
Q 037779          271 AVT  273 (310)
Q Consensus       271 ~~~  273 (310)
                      +++
T Consensus       189 ai~  191 (192)
T PF04131_consen  189 AIK  191 (192)
T ss_dssp             HCH
T ss_pred             HHh
Confidence            875

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]

Probab=99.85  E-value=5.4e-20  Score=157.94  Aligned_cols=195  Identities=28%  Similarity=0.411  Sum_probs=152.5

Q ss_pred             cceeeecCCccccCCC------------HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceE
Q 037779           29 GLAQMLRGGVIMDVVT------------PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVM   96 (310)
Q Consensus        29 ~~~~~l~~g~i~~~~~------------~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~   96 (310)
                      .+...+++|.|.+|..            +.+|+++.++||.+|          |..+       .++|+++++.+++|++
T Consensus         8 ~~~~~~~gglIVSCQal~~~pl~~~~iv~~mA~Aa~~gGAvgi----------R~~g-------v~dIkai~~~v~vPII   70 (229)
T COG3010           8 KLKEQLKGGLIVSCQALPGEPLDSPEIVAAMALAAEQGGAVGI----------RIEG-------VEDIKAIRAVVDVPII   70 (229)
T ss_pred             HHHHHhcCCeEEEeecCCCCCCcchhHHHHHHHHHHhCCcceE----------eecc-------hhhHHHHHhhCCCCeE
Confidence            3445667788877743            268999999999997          4433       7899999999999998


Q ss_pred             ee---c------ccc-chHHHHHHHHcCCCeeeec--CCCChh-HHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCE
Q 037779           97 AK---A------RIG-HFVEAQILEAIGVDYVDES--EVLTPA-DEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAM  162 (310)
Q Consensus        97 ~k---d------~i~-~~~~~~~~~~aGad~v~~~--~~~~~~-~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~  162 (310)
                      .-   |      +|. +.++++.+.++|++.|...  .-.-|. .+.+.++. +.+++..+++|.|++|...|.++|+|+
T Consensus        71 GIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~  150 (229)
T COG3010          71 GIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKLGFDI  150 (229)
T ss_pred             EEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCcE
Confidence            73   2      221 2368899999999999843  211233 44444544 678899999999999999999999999


Q ss_pred             EEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHH
Q 037779          163 IRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM  242 (310)
Q Consensus       163 I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~  242 (310)
                      |++...+||++.                  .          ....+++++++.+.+ ..++|  ||+|.++||+++.+++
T Consensus       151 IGTTLsGYT~~~------------------~----------~~~~pDf~lvk~l~~-~~~~v--IAEGr~~tP~~Ak~a~  199 (229)
T COG3010         151 IGTTLSGYTGYT------------------E----------KPTEPDFQLVKQLSD-AGCRV--IAEGRYNTPEQAKKAI  199 (229)
T ss_pred             EecccccccCCC------------------C----------CCCCCcHHHHHHHHh-CCCeE--EeeCCCCCHHHHHHHH
Confidence            998866776531                  0          012557999999988 56788  7899999999999999


Q ss_pred             HcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          243 QLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       243 ~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      +.||++|+|||+|++   |..-++.|.++++.
T Consensus       200 ~~Ga~aVvVGsAITR---p~~It~~F~~~ik~  228 (229)
T COG3010         200 EIGADAVVVGSAITR---PEEITQWFVDAIKS  228 (229)
T ss_pred             HhCCeEEEECcccCC---HHHHHHHHHHHHhc
Confidence            999999999999998   88888999888763

>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]

Probab=99.82  E-value=1.2e-18  Score=153.61  Aligned_cols=183  Identities=20%  Similarity=0.281  Sum_probs=140.3

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCC--CCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-ec
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVA--RMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-ES  121 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~--~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~  121 (310)
                      .+.++.+.++|++.+ +++       .++.+.  .......++.+++.+++|++++|.+.      .+.+.|||+|| .+
T Consensus        24 ~~~ve~al~~Gv~~v-QlR-------~K~~~~~~~~~~a~~~~~lc~~~~v~liINd~~d------lA~~~~AdGVHlGq   89 (211)
T COG0352          24 LEWVEAALKGGVTAV-QLR-------EKDLSDEEYLALAEKLRALCQKYGVPLIINDRVD------LALAVGADGVHLGQ   89 (211)
T ss_pred             HHHHHHHHhCCCeEE-EEe-------cCCCChHHHHHHHHHHHHHHHHhCCeEEecCcHH------HHHhCCCCEEEcCC
Confidence            688999999999998 553       222110  01224567778888899999997754      67789999999 45


Q ss_pred             CCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHh
Q 037779          122 EVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFT  201 (310)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~  201 (310)
                      +.++..+..+.+   +.++.+++++|+.+|++++.+.|+||+++ |+.|.+                     .++..   
T Consensus        90 ~D~~~~~ar~~~---~~~~iIG~S~h~~eea~~A~~~g~DYv~~-GpifpT---------------------~tK~~---  141 (211)
T COG0352          90 DDMPLAEARELL---GPGLIIGLSTHDLEEALEAEELGADYVGL-GPIFPT---------------------STKPD---  141 (211)
T ss_pred             cccchHHHHHhc---CCCCEEEeecCCHHHHHHHHhcCCCEEEE-CCcCCC---------------------CCCCC---
Confidence            555555554433   45689999999999999999999999998 454422                     21110   


Q ss_pred             hhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcC
Q 037779          202 FAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY  275 (310)
Q Consensus       202 ~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~  275 (310)
                        . ....++.++++.+...+|+++|  ||| +++++.+++++|++||.|.|+||.+.||...++++++.++.+
T Consensus       142 --~-~~~G~~~l~~~~~~~~iP~vAI--GGi-~~~nv~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~~~~~~  209 (211)
T COG0352         142 --A-PPLGLEGLREIRELVNIPVVAI--GGI-NLENVPEVLEAGADGVAVVSAITSAADPAAAAKALRNALEDE  209 (211)
T ss_pred             --C-CccCHHHHHHHHHhCCCCEEEE--cCC-CHHHHHHHHHhCCCeEEehhHhhcCCCHHHHHHHHHHHHHhh
Confidence              0 1235778888888777999777  999 699999999999999999999999999999999999998754

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=99.75  E-value=1.4e-16  Score=142.29  Aligned_cols=188  Identities=22%  Similarity=0.291  Sum_probs=135.5

Q ss_pred             cCCccccCCC-HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceE---eecc-----c-c-c
Q 037779           35 RGGVIMDVVT-PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVM---AKAR-----I-G-H  103 (310)
Q Consensus        35 ~~g~i~~~~~-~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~---~kd~-----i-~-~  103 (310)
                      .++.+.+..+ .++++++.++|+.+++..                 .++.++++++.+++|++   .+|+     + + +
T Consensus        15 ~~~~~~~~~~~~~~a~a~~~~G~~~~~~~-----------------~~~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~~   77 (221)
T PRK01130         15 PGEPLHSPEIMAAMALAAVQGGAVGIRAN-----------------GVEDIKAIRAVVDVPIIGIIKRDYPDSEVYITPT   77 (221)
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCeEEEcC-----------------CHHHHHHHHHhCCCCEEEEEecCCCCCCceECCC
Confidence            3445554444 378999999999988421                 16789999999999997   4452     2 2 2


Q ss_pred             hHHHHHHHHcCCCeeeec-CC------CChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHH
Q 037779          104 FVEAQILEAIGVDYVDES-EV------LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVE  176 (310)
Q Consensus       104 ~~~~~~~~~aGad~v~~~-~~------~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~  176 (310)
                      .++++.+.++|||.|... ..      .+..++++.++++ .+++++++++|.++++++.+.|+|++.++....++.   
T Consensus        78 ~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~-~~i~vi~~v~t~ee~~~a~~~G~d~i~~~~~g~t~~---  153 (221)
T PRK01130         78 LKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEY-PGQLLMADCSTLEEGLAAQKLGFDFIGTTLSGYTEE---  153 (221)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhC-CCCeEEEeCCCHHHHHHHHHcCCCEEEcCCceeecC---
Confidence            357889999999987632 11      2334566666654 789999999999999999999999998753222211   


Q ss_pred             HHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc
Q 037779          177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF  256 (310)
Q Consensus       177 ~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~  256 (310)
                                     .. .         ......++++.+++..++||  +++|||++++++.+++++|||+|++||+|+
T Consensus       154 ---------------~~-~---------~~~~~~~~i~~i~~~~~iPv--ia~GGI~t~~~~~~~l~~GadgV~iGsai~  206 (221)
T PRK01130        154 ---------------TK-K---------PEEPDFALLKELLKAVGCPV--IAEGRINTPEQAKKALELGAHAVVVGGAIT  206 (221)
T ss_pred             ---------------CC-C---------CCCcCHHHHHHHHHhCCCCE--EEECCCCCHHHHHHHHHCCCCEEEEchHhc
Confidence                           00 0         01234677888887768999  678999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHH
Q 037779          257 KSGDPVRRARAIVQAVT  273 (310)
Q Consensus       257 ~~~dp~~~~~~~~~~~~  273 (310)
                      +.++|   .+.|.+.+.
T Consensus       207 ~~~~~---~~~~~~~~~  220 (221)
T PRK01130        207 RPEEI---TKWFVDALK  220 (221)
T ss_pred             CCHHH---HHHHHHHhh
Confidence            86555   445555543

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=99.74  E-value=4.1e-16  Score=138.51  Aligned_cols=213  Identities=22%  Similarity=0.259  Sum_probs=161.4

Q ss_pred             cccceeeecCCcccc----CCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccc
Q 037779           27 KVGLAQMLRGGVIMD----VVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARI  101 (310)
Q Consensus        27 ~~~~~~~l~~g~i~~----~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i  101 (310)
                      +.+.+++|.+|+...    ..+| +.|+.|.+.||.+++..   +.|. +|.|.  ..|.+.+++|.+.++.||.+...|
T Consensus        11 ~~G~~VRL~qGd~~~~~~y~~~P~~~a~~~~~~Ga~~lHlV---DLdg-A~~g~--~~n~~~i~~i~~~~~~~vQvGGGI   84 (241)
T COG0106          11 KDGKVVRLVQGDYGKETVYSDDPLEVAKKWSDQGAEWLHLV---DLDG-AKAGG--PRNLEAIKEILEATDVPVQVGGGI   84 (241)
T ss_pred             eCCEEEEeecccCCcceEecCCHHHHHHHHHHcCCcEEEEe---eccc-cccCC--cccHHHHHHHHHhCCCCEEeeCCc
Confidence            367899999999865    3344 89999999999998643   2333 45433  567899999999999999999999


Q ss_pred             cchHHHHHHHHcCCCeee-ec-CCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCC-CC-chHHH
Q 037779          102 GHFVEAQILEAIGVDYVD-ES-EVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAG-TG-NIVEA  177 (310)
Q Consensus       102 ~~~~~~~~~~~aGad~v~-~~-~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~-~~-~~~~~  177 (310)
                      .+.+.++.+.++|++.|+ .+ ...+|..+.+.+++.+-.+.+.++++.-+.            .++||.. ++ ...+.
T Consensus        85 Rs~~~v~~ll~~G~~rViiGt~av~~p~~v~~~~~~~g~rivv~lD~r~g~v------------av~GW~e~s~~~~~~l  152 (241)
T COG0106          85 RSLEDVEALLDAGVARVIIGTAAVKNPDLVKELCEEYGDRIVVALDARDGKV------------AVSGWQEDSGVELEEL  152 (241)
T ss_pred             CCHHHHHHHHHCCCCEEEEecceecCHHHHHHHHHHcCCcEEEEEEccCCcc------------ccccccccccCCHHHH
Confidence            888899999999999988 44 445566666666666644777777766322            4556632 22 44455


Q ss_pred             HHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccc
Q 037779          178 VRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVF  256 (310)
Q Consensus       178 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~  256 (310)
                      .+...+.+.....++.+++|+++     .++++++...+.+..++||  +++|||+|.+|++.+.+. |+.|+++|+||+
T Consensus       153 ~~~~~~~g~~~ii~TdI~~DGtl-----~G~n~~l~~~l~~~~~ipv--iaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy  225 (241)
T COG0106         153 AKRLEEVGLAHILYTDISRDGTL-----SGPNVDLVKELAEAVDIPV--IASGGVSSLDDIKALKELSGVEGVIVGRALY  225 (241)
T ss_pred             HHHHHhcCCCeEEEEeccccccc-----CCCCHHHHHHHHHHhCcCE--EEecCcCCHHHHHHHHhcCCCcEEEEehHHh
Confidence            56666565555666777888774     4668999999998889999  789999999999999999 999999999999


Q ss_pred             cCC-CHHHH
Q 037779          257 KSG-DPVRR  264 (310)
Q Consensus       257 ~~~-dp~~~  264 (310)
                      ... ++.++
T Consensus       226 ~g~~~l~ea  234 (241)
T COG0106         226 EGKFTLEEA  234 (241)
T ss_pred             cCCCCHHHH
Confidence            875 34433

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=99.73  E-value=3.2e-16  Score=139.80  Aligned_cols=184  Identities=23%  Similarity=0.317  Sum_probs=135.4

Q ss_pred             eeecCCccccCCC-HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEe---ecc------c
Q 037779           32 QMLRGGVIMDVVT-PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMA---KAR------I  101 (310)
Q Consensus        32 ~~l~~g~i~~~~~-~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~---kd~------i  101 (310)
                      |.+.+|.+.+..+ .++++++.++|+..++        .    +     +++.++.+++.+++|++.   +++      +
T Consensus        16 ~~~~~~~~~~~~~i~~~a~~~~~~G~~~~~--------~----~-----~~~~~~~i~~~~~iPil~~~~~~~~~~~~~i   78 (219)
T cd04729          16 QALPGEPLHSPEIMAAMALAAVQGGAVGIR--------A----N-----GVEDIRAIRARVDLPIIGLIKRDYPDSEVYI   78 (219)
T ss_pred             cCCCCCCcCcHHHHHHHHHHHHHCCCeEEE--------c----C-----CHHHHHHHHHhCCCCEEEEEecCCCCCCcee
Confidence            3444577766555 3789999999999863        1    1     267889999888999973   444      1


Q ss_pred             c-chHHHHHHHHcCCCeeeec-CC------CChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCc
Q 037779          102 G-HFVEAQILEAIGVDYVDES-EV------LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGN  173 (310)
Q Consensus       102 ~-~~~~~~~~~~aGad~v~~~-~~------~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~  173 (310)
                      + +.++++.+.++|||.|... ..      ....++++.+++.+ +++++++++|.+++..+.+.|+|++.++....++.
T Consensus        79 g~~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~t~~ea~~a~~~G~d~i~~~~~g~t~~  157 (219)
T cd04729          79 TPTIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADISTLEEALNAAKLGFDIIGTTLSGYTEE  157 (219)
T ss_pred             CCCHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECCCHHHHHHHHHcCCCEEEccCcccccc
Confidence            2 2347889999999988631 11      13456666666655 68999999999999999999999997752222211


Q ss_pred             hHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779          174 IVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       174 ~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs  253 (310)
                                        .. .         .....++.++.+++..++||  ++.|||++++++.+++++|||+|++||
T Consensus       158 ------------------~~-~---------~~~~~~~~l~~i~~~~~ipv--ia~GGI~~~~~~~~~l~~GadgV~vGs  207 (219)
T cd04729         158 ------------------TA-K---------TEDPDFELLKELRKALGIPV--IAEGRINSPEQAAKALELGADAVVVGS  207 (219)
T ss_pred             ------------------cc-C---------CCCCCHHHHHHHHHhcCCCE--EEeCCCCCHHHHHHHHHCCCCEEEEch
Confidence                              00 0         01235678888887668999  678999999999999999999999999


Q ss_pred             ccccCCCHHH
Q 037779          254 GVFKSGDPVR  263 (310)
Q Consensus       254 ai~~~~dp~~  263 (310)
                      +|++.+||..
T Consensus       208 al~~~~~~~~  217 (219)
T cd04729         208 AITRPEHITG  217 (219)
T ss_pred             HHhChHhHhh
Confidence            9999988764

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=99.70  E-value=1e-15  Score=136.63  Aligned_cols=185  Identities=14%  Similarity=0.131  Sum_probs=130.7

Q ss_pred             HHHHHHHHHcC-CcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-C
Q 037779           45 PEQARIAEEAG-ACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-E  122 (310)
Q Consensus        45 ~~~a~~~~~~G-a~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~  122 (310)
                      .+.++.+.++| +++| +++-...+.+.+     ......++.+++..++|++++|+      ++.+.+.|+|+||.. .
T Consensus        29 ~~~l~~al~~G~v~~v-QlR~K~l~~~~~-----~~~a~~l~~l~~~~gv~liINd~------~dlA~~~~adGVHLg~~   96 (221)
T PRK06512         29 AKLLRAALQGGDVASV-ILPQYGLDEATF-----QKQAEKLVPVIQEAGAAALIAGD------SRIAGRVKADGLHIEGN   96 (221)
T ss_pred             HHHHHHHHcCCCccEE-EEeCCCCCHHHH-----HHHHHHHHHHHHHhCCEEEEeCH------HHHHHHhCCCEEEECcc
Confidence            47789999999 6988 563111111111     11134455666667899999876      346788999999943 3


Q ss_pred             CCChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHh
Q 037779          123 VLTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFT  201 (310)
Q Consensus       123 ~~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~  201 (310)
                      .+...+..+.   .+.+..+.++ +|+.+++..+.+.|+||+.+. +.++.+                     .++    
T Consensus        97 d~~~~~~r~~---~~~~~iiG~s~~~s~~~a~~A~~~gaDYv~~G-pv~t~t---------------------K~~----  147 (221)
T PRK06512         97 LAALAEAIEK---HAPKMIVGFGNLRDRHGAMEIGELRPDYLFFG-KLGADN---------------------KPE----  147 (221)
T ss_pred             ccCHHHHHHh---cCCCCEEEecCCCCHHHHHHhhhcCCCEEEEC-CCCCCC---------------------CCC----
Confidence            3333333322   3455777876 678888888889999999984 544321                     000    


Q ss_pred             hhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCC
Q 037779          202 FAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYS  276 (310)
Q Consensus       202 ~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~  276 (310)
                         ......++++++.+..++||++|  ||| +++++.+++++|++||.+.|+|++++||.+.+++|.+.+..++
T Consensus       148 ---~~p~gl~~l~~~~~~~~iPvvAI--GGI-~~~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~~~~~~~  216 (221)
T PRK06512        148 ---AHPRNLSLAEWWAEMIEIPCIVQ--AGS-DLASAVEVAETGAEFVALERAVFDAHDPPLAVAQANALLDEKA  216 (221)
T ss_pred             ---CCCCChHHHHHHHHhCCCCEEEE--eCC-CHHHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHHHHhhcc
Confidence               01123567777777778999766  999 6999999999999999999999999999999999999987654

>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=99.69  E-value=1.8e-15  Score=134.23  Aligned_cols=197  Identities=11%  Similarity=0.008  Sum_probs=132.7

Q ss_pred             eeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHH
Q 037779           32 QMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILE  111 (310)
Q Consensus        32 ~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~  111 (310)
                      +.++...+.+.  .+.++.+.++|+++| +|+-...+.+.+     ......+..+++..+.+++++++      ++.+.
T Consensus        11 ~~~~ly~i~~~--~~~l~~~l~~G~~~v-qLR~k~~~~~~~-----~~la~~l~~~~~~~~~~liInd~------~~lA~   76 (211)
T PRK03512         11 FRLGLYPVVDS--VQWIERLLDAGVRTL-QLRIKDRRDEEV-----EADVVAAIALGRRYQARLFINDY------WRLAI   76 (211)
T ss_pred             ccceEEEEECC--HHHHHHHHhCCCCEE-EEcCCCCCHHHH-----HHHHHHHHHHHHHhCCeEEEeCH------HHHHH
Confidence            34444444433  367999999999998 563111111111     11123344556677899999865      34677


Q ss_pred             HcCCCeeee-cCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceec
Q 037779          112 AIGVDYVDE-SEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRV  190 (310)
Q Consensus       112 ~aGad~v~~-~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~  190 (310)
                      +.|+|+||. ...+++.+..+.   .+.+..+.+++||.+|+.++.+.|+||+.+. +.+.+                  
T Consensus        77 ~~~adGVHlg~~d~~~~~~r~~---~~~~~~iG~S~H~~~e~~~A~~~gaDYi~lg-pvf~T------------------  134 (211)
T PRK03512         77 KHQAYGVHLGQEDLETADLNAI---RAAGLRLGVSTHDDMEIDVALAARPSYIALG-HVFPT------------------  134 (211)
T ss_pred             HcCCCEEEcChHhCCHHHHHHh---cCCCCEEEEeCCCHHHHHHHhhcCCCEEEEC-CccCC------------------
Confidence            899999983 333333333221   2456789999999999999999999999984 44322                  


Q ss_pred             ccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 037779          191 LRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV  269 (310)
Q Consensus       191 l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~  269 (310)
                         .++.+.     .....++.+..+.+. .++||++|  ||| +++++.+++++|++||.|.|+|++++||.+.+++|+
T Consensus       135 ---~tK~~~-----~~~~G~~~l~~~~~~~~~~PV~Ai--GGI-~~~ni~~l~~~Ga~GiAvisai~~~~d~~~~~~~l~  203 (211)
T PRK03512        135 ---QTKQMP-----SAPQGLAQLARHVERLADYPTVAI--GGI-SLERAPAVLATGVGSIAVVSAITQAADWRAATAQLL  203 (211)
T ss_pred             ---CCCCCC-----CCCCCHHHHHHHHHhcCCCCEEEE--CCC-CHHHHHHHHHcCCCEEEEhhHhhCCCCHHHHHHHHH
Confidence               111000     011234545555443 47899655  999 599999999999999999999999999999999999


Q ss_pred             HHHHcC
Q 037779          270 QAVTNY  275 (310)
Q Consensus       270 ~~~~~~  275 (310)
                      +.+...
T Consensus       204 ~~~~~~  209 (211)
T PRK03512        204 ELAEVG  209 (211)
T ss_pred             HHHhhc
Confidence            987654

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=99.68  E-value=6.3e-15  Score=133.22  Aligned_cols=213  Identities=17%  Similarity=0.195  Sum_probs=153.5

Q ss_pred             ccceeeecCCcccc----CCCH-HHHHHHHHcCCcEEEecccccchhh-hcCCCCCCCChHHHHHHHhhcCcceEeeccc
Q 037779           28 VGLAQMLRGGVIMD----VVTP-EQARIAEEAGACAVMALERVPADIR-AQGGVARMSDPQLIKQIKSSVTIPVMAKARI  101 (310)
Q Consensus        28 ~~~~~~l~~g~i~~----~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r-~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i  101 (310)
                      .+.+++|.+|....    ..+| ++|+.|.+.|+++++..     |.. ++.|.  ..|.+.++++.+.+ .|+.+...+
T Consensus        11 ~Gk~Vrl~~G~~~~~~~~~~dP~~~A~~~~~~ga~~lhiv-----DLd~a~~g~--~~n~~~i~~i~~~~-~~v~vGGGI   82 (241)
T PRK14114         11 RGKVARMVKGKKENTIFYEKDPAELVEKLIEEGFTLIHVV-----DLSKAIENS--VENLPVLEKLSEFA-EHIQIGGGI   82 (241)
T ss_pred             CCEEEEeeccccCcceEECCCHHHHHHHHHHCCCCEEEEE-----ECCCcccCC--cchHHHHHHHHhhc-CcEEEecCC
Confidence            46677787777443    3455 88999999999998654     332 23333  45688999999887 799999999


Q ss_pred             cchHHHHHHHHcCCCeee-ecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCC-C-CchHHHH
Q 037779          102 GHFVEAQILEAIGVDYVD-ESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAG-T-GNIVEAV  178 (310)
Q Consensus       102 ~~~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~-~-~~~~~~~  178 (310)
                      .+.+.++.+.++||+.|. .+..++.+++++.+.+.+..+.+.++++.          |  .+.++|+.. + -...+.+
T Consensus        83 rs~e~~~~~l~~Ga~rvvigT~a~~~p~~l~~~~~~~~~ivvslD~k~----------g--~v~~~gw~~~~~~~~~e~~  150 (241)
T PRK14114         83 RSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKFLKEIDVEPVFSLDTRG----------G--KVAFKGWLAEEEIDPVSLL  150 (241)
T ss_pred             CCHHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHhCCCEEEEEEccC----------C--EEeeCCCeecCCCCHHHHH
Confidence            888899999999999976 56555556666666443222434444432          2  344555532 2 1345666


Q ss_pred             HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc-----C-CCEEEEc
Q 037779          179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-----G-CDGVFVG  252 (310)
Q Consensus       179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~-----G-adgV~VG  252 (310)
                      +.+.+++.....+..++.|++     ..+++.++++.+.+..++||  |++|||++.+|+.++.++     | ++|+++|
T Consensus       151 ~~~~~~g~~~ii~tdI~rdGt-----~~G~d~el~~~l~~~~~~pv--iasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg  223 (241)
T PRK14114        151 KRLKEYGLEEIVHTEIEKDGT-----LQEHDFSLTRKIAIEAEVKV--FAAGGISSENSLKTAQRVHRETNGLLKGVIVG  223 (241)
T ss_pred             HHHHhcCCCEEEEEeechhhc-----CCCcCHHHHHHHHHHCCCCE--EEECCCCCHHHHHHHHhcccccCCcEEEEEEe
Confidence            666667777677777888876     34678999999988788999  789999999999999986     6 9999999


Q ss_pred             cccccCCCHHHHHHH
Q 037779          253 SGVFKSGDPVRRARA  267 (310)
Q Consensus       253 sai~~~~dp~~~~~~  267 (310)
                      ++|+...-..+.++.
T Consensus       224 ~Al~~g~i~~~e~~~  238 (241)
T PRK14114        224 RAFLEGILTVEVMKR  238 (241)
T ss_pred             hHHHCCCCCHHHHHH
Confidence            999998755444433

>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional

Probab=99.68  E-value=3.4e-15  Score=141.05  Aligned_cols=184  Identities=18%  Similarity=0.195  Sum_probs=132.2

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeee-cCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE-SEVL  124 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~-~~~~  124 (310)
                      +.++.+.++|+++| +++....+.+.+     ......+..+++..+.+++++|++      +.+.+.|+|+||. ...+
T Consensus       161 ~~l~~al~~Gv~~V-QLR~K~~~~~~~-----~~~a~~L~~l~~~~~~~lIIND~v------dlAl~~~aDGVHLgq~dl  228 (347)
T PRK02615        161 EVVEAALKGGVTLV-QYRDKTADDRQR-----LEEAKKLKELCHRYGALFIVNDRV------DIALAVDADGVHLGQEDL  228 (347)
T ss_pred             HHHHHHHHcCCCEE-EECCCCCCHHHH-----HHHHHHHHHHHHHhCCeEEEeChH------HHHHHcCCCEEEeChhhc
Confidence            67889999999988 563111111111     112345667777778999988764      3678899999993 3333


Q ss_pred             ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779          125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK  204 (310)
Q Consensus       125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  204 (310)
                      ++.+..+.   .+++..+++++||.+|+..|.+.|+|||++. +.+.+                     .++.+      
T Consensus       229 ~~~~aR~l---lg~~~iIG~S~Hs~~e~~~A~~~GaDYI~lG-Pvf~T---------------------~tKp~------  277 (347)
T PRK02615        229 PLAVARQL---LGPEKIIGRSTTNPEEMAKAIAEGADYIGVG-PVFPT---------------------PTKPG------  277 (347)
T ss_pred             CHHHHHHh---cCCCCEEEEecCCHHHHHHHHHcCCCEEEEC-CCcCC---------------------CCCCC------
Confidence            33333222   3456789999999999999999999999985 43321                     11100      


Q ss_pred             cCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcC
Q 037779          205 NIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY  275 (310)
Q Consensus       205 ~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~  275 (310)
                      .....++.++.+.+..++||++  -||| +++++.+++++|++||.|+|+|++++||...++.|.+.+...
T Consensus       278 ~~~~Gle~l~~~~~~~~iPv~A--iGGI-~~~ni~~l~~~Ga~gVAvisaI~~a~dp~~~~~~l~~~l~~~  345 (347)
T PRK02615        278 KAPAGLEYLKYAAKEAPIPWFA--IGGI-DKSNIPEVLQAGAKRVAVVRAIMGAEDPKQATQELLKQLSRE  345 (347)
T ss_pred             CCCCCHHHHHHHHHhCCCCEEE--ECCC-CHHHHHHHHHcCCcEEEEeHHHhCCCCHHHHHHHHHHHHhcc
Confidence            0123477788887767899954  5999 599999999999999999999999999999999999988754

>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=99.67  E-value=2.3e-15  Score=144.43  Aligned_cols=188  Identities=14%  Similarity=0.051  Sum_probs=131.5

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-ecCC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEV  123 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~  123 (310)
                      .+.++.+.++|++.| +||....+.+.+     ......+.++++..+.+++++|+      ++.+.+.||++|| ..+.
T Consensus       220 ~~~ve~aL~aGv~~V-QLReK~ls~~el-----~~la~~l~~l~~~~gv~LiIND~------~dlAl~~gAdGVHLGQeD  287 (437)
T PRK12290        220 VEWIERLLPLGINTV-QLRIKDPQQADL-----EQQIIRAIALGREYNAQVFINDY------WQLAIKHQAYGVHLGQED  287 (437)
T ss_pred             HHHHHHHHhCCCCEE-EEeCCCCCHHHH-----HHHHHHHHHHHHHhCCEEEEECH------HHHHHHcCCCEEEcChHH
Confidence            467999999999998 564111111111     11123344555667899988865      4577889999998 4444


Q ss_pred             CChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779          124 LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA  203 (310)
Q Consensus       124 ~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  203 (310)
                      ++..+..+.   .+.+..+++++|+.+|+.+|.+.|+|||++ |+.+.+                     .++..     
T Consensus       288 L~~~~aR~i---lg~~~iIGvStHs~eEl~~A~~~gaDYI~l-GPIFpT---------------------~TK~~-----  337 (437)
T PRK12290        288 LEEANLAQL---TDAGIRLGLSTHGYYELLRIVQIQPSYIAL-GHIFPT---------------------TTKQM-----  337 (437)
T ss_pred             cchhhhhhh---cCCCCEEEEecCCHHHHHHHhhcCCCEEEE-CCccCC---------------------CCCCC-----
Confidence            443333322   245688999999999999999999999998 454322                     11100     


Q ss_pred             ccCCCcHHHHHHHHhc---------CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          204 KNIAAPYDLVMQTKQL---------GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       204 ~~~~~~~~l~~~i~~~---------~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      ....-.++.++.+.+.         .++||++|  ||| +++++.+++++|++||.|-|+|++++||.+.+++|.+.++.
T Consensus       338 ~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAI--GGI-~~~Ni~~vl~aGa~GVAVVSAI~~A~DP~aa~~~l~~~~~~  414 (437)
T PRK12290        338 PSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAI--GGI-DQSNAEQVWQCGVSSLAVVRAITLAEDPQLVIEFFDQVMAE  414 (437)
T ss_pred             CCCCCCHHHHHHHHHHhhhccccccCCCCEEEE--CCc-CHHHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHHHHHhh
Confidence            0011134444444332         26899776  999 69999999999999999999999999999999999999988


Q ss_pred             CCC
Q 037779          275 YSD  277 (310)
Q Consensus       275 ~~~  277 (310)
                      +..
T Consensus       415 ~~~  417 (437)
T PRK12290        415 NQL  417 (437)
T ss_pred             cCC
Confidence            765

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=99.67  E-value=1.1e-14  Score=131.81  Aligned_cols=199  Identities=22%  Similarity=0.228  Sum_probs=136.3

Q ss_pred             ccceeeecCCccc---cCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccc
Q 037779           28 VGLAQMLRGGVIM---DVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGH  103 (310)
Q Consensus        28 ~~~~~~l~~g~i~---~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~  103 (310)
                      .+.++++.+|...   ...+| ++|+.|.+.|++++++.     |...-.|  ...|.+.++++++.+++|+++...+.+
T Consensus        14 ~G~~V~~~~g~~~~~~~~~dp~~~a~~~~~~g~~~l~iv-----DLd~~~g--~~~n~~~i~~i~~~~~~pv~vgGGirs   86 (241)
T PRK14024         14 DGQAVRLVQGEAGSETSYGSPLDAALAWQRDGAEWIHLV-----DLDAAFG--RGSNRELLAEVVGKLDVKVELSGGIRD   86 (241)
T ss_pred             CCEEEEeecccccCceECCCHHHHHHHHHHCCCCEEEEE-----eccccCC--CCccHHHHHHHHHHcCCCEEEcCCCCC
Confidence            4667777776632   23355 89999999999998654     2221112  245689999999999999999999988


Q ss_pred             hHHHHHHHHcCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecC--------------CHHH-HHHHHHhCCCEEEEe
Q 037779          104 FVEAQILEAIGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCR--------------NLGE-SLRRIREGAAMIRTK  166 (310)
Q Consensus       104 ~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~--------------t~~e-a~~a~~~Gad~I~v~  166 (310)
                      .++++.+.++||+.+. .+..+..+++.+.+.+ .+-.+.+.++++              ++.+ +++..+.|++.+.++
T Consensus        87 ~edv~~~l~~Ga~kvviGs~~l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~  166 (241)
T PRK14024         87 DESLEAALATGCARVNIGTAALENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVT  166 (241)
T ss_pred             HHHHHHHHHCCCCEEEECchHhCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEE
Confidence            8999999999999977 5555554444444433 221222222331              1122 333445566655555


Q ss_pred             cCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHH---
Q 037779          167 GEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ---  243 (310)
Q Consensus       167 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~---  243 (310)
                      +.                          +.++.     ..++++++++.+++..++||  |++|||.|++|+.++.+   
T Consensus       167 ~~--------------------------~~~g~-----~~G~d~~~i~~i~~~~~ipv--iasGGi~s~~D~~~l~~~~~  213 (241)
T PRK14024        167 DV--------------------------TKDGT-----LTGPNLELLREVCARTDAPV--VASGGVSSLDDLRALAELVP  213 (241)
T ss_pred             ee--------------------------cCCCC-----ccCCCHHHHHHHHhhCCCCE--EEeCCCCCHHHHHHHhhhcc
Confidence            32                          22222     12457999999998888999  78999999999999864   


Q ss_pred             cCCCEEEEccccccCCCHHHHHH
Q 037779          244 LGCDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       244 ~GadgV~VGsai~~~~dp~~~~~  266 (310)
                      .|++||++|++++....+.+.+.
T Consensus       214 ~GvdgV~igra~~~g~~~~~~~~  236 (241)
T PRK14024        214 LGVEGAIVGKALYAGAFTLPEAL  236 (241)
T ss_pred             CCccEEEEeHHHHcCCCCHHHHH
Confidence            49999999999999886655443

>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]

Probab=99.66  E-value=2.4e-15  Score=131.60  Aligned_cols=211  Identities=21%  Similarity=0.247  Sum_probs=155.0

Q ss_pred             cccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCe
Q 037779           39 IMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDY  117 (310)
Q Consensus        39 i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~  117 (310)
                      +++.+|| ++|+.|.+.|||.+..|     |+.+.. ..+....+.++++.+.+.+|+.+...+...+.++.++.+|||.
T Consensus        26 lrd~GDpVelA~~Y~e~GADElvFl-----DItAs~-~gr~~~~~vv~r~A~~vfiPltVGGGI~s~eD~~~ll~aGADK   99 (256)
T COG0107          26 LRDAGDPVELAKRYNEEGADELVFL-----DITASS-EGRETMLDVVERVAEQVFIPLTVGGGIRSVEDARKLLRAGADK   99 (256)
T ss_pred             hhhcCChHHHHHHHHHcCCCeEEEE-----eccccc-ccchhHHHHHHHHHhhceeeeEecCCcCCHHHHHHHHHcCCCe
Confidence            4566775 89999999999999666     665543 1234457889999999999999999998888999999999999


Q ss_pred             ee-ecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHH-hCCC-EEEEe-cCCCCCchHHHHHHHHH---hhcceec
Q 037779          118 VD-ESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIR-EGAA-MIRTK-GEAGTGNIVEAVRHVRS---VMGDIRV  190 (310)
Q Consensus       118 v~-~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~-~Gad-~I~v~-g~~~~~~~~~~~~~~~~---~~~~~~~  190 (310)
                      |. .++.+..++++..+...+-.+.+++.+.....    .. .... .|.++ |...++  .++++|+++   +++....
T Consensus       100 VSINsaAv~~p~lI~~~a~~FGsQciVvaIDakr~----~~g~~~~~~v~~~gGr~~t~--~d~~~Wa~~~e~~GAGEIl  173 (256)
T COG0107         100 VSINSAAVKDPELITEAADRFGSQCIVVAIDAKRV----PDGENGWYEVFTHGGREDTG--LDAVEWAKEVEELGAGEIL  173 (256)
T ss_pred             eeeChhHhcChHHHHHHHHHhCCceEEEEEEeeec----cCCCCCcEEEEecCCCcCCC--cCHHHHHHHHHHcCCceEE
Confidence            97 45445556677666654323666666533211    10 1112 23333 333333  456666665   6667889


Q ss_pred             ccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHHHH
Q 037779          191 LRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRARAI  268 (310)
Q Consensus       191 l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~~~  268 (310)
                      ++.++.|++     ..+.+.++++.+++..++||  ||+||.+++++..+++..| ||+++..|-|...+-....++++
T Consensus       174 LtsmD~DGt-----k~GyDl~l~~~v~~~v~iPv--IASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~~~~i~evK~y  245 (256)
T COG0107         174 LTSMDRDGT-----KAGYDLELTRAVREAVNIPV--IASGGAGKPEHFVEAFTEGKADAALAASIFHFGEITIGEVKEY  245 (256)
T ss_pred             Eeeeccccc-----ccCcCHHHHHHHHHhCCCCE--EecCCCCcHHHHHHHHHhcCccHHHhhhhhhcCcccHHHHHHH
Confidence            999998876     35778999999999999999  7899999999999999776 99999999999987654444444

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=99.65  E-value=2.1e-14  Score=129.75  Aligned_cols=199  Identities=23%  Similarity=0.229  Sum_probs=133.9

Q ss_pred             ccceeeecCCccc----cCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc
Q 037779           28 VGLAQMLRGGVIM----DVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG  102 (310)
Q Consensus        28 ~~~~~~l~~g~i~----~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~  102 (310)
                      .+.++++.+|...    ...+| ++++.|.+.|+++++...   .+. ...  ....+.+.++++++.+++|+++...+.
T Consensus        13 ~g~~v~~~~g~~~~~~~~~~~~~e~a~~~~~~G~~~l~i~d---l~~-~~~--~~~~~~~~i~~i~~~~~~~l~v~GGi~   86 (241)
T PRK13585         13 GGKCVQLVQGEPGTETVSYGDPVEVAKRWVDAGAETLHLVD---LDG-AFE--GERKNAEAIEKIIEAVGVPVQLGGGIR   86 (241)
T ss_pred             CCeEEEeeccccCCceEECCCHHHHHHHHHHcCCCEEEEEe---chh-hhc--CCcccHHHHHHHHHHcCCcEEEcCCcC
Confidence            4556666666422    23454 899999999999985441   111 111  124568899999999999999988888


Q ss_pred             chHHHHHHHHcCCCeee-ecCCCChhHHHHHHHh-cCCC-CcEEeecC---------------CH-HHHHHHHHhCCCEE
Q 037779          103 HFVEAQILEAIGVDYVD-ESEVLTPADEENHINK-HNFR-VPFVCGCR---------------NL-GESLRRIREGAAMI  163 (310)
Q Consensus       103 ~~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~-~~~~-l~v~~~v~---------------t~-~ea~~a~~~Gad~I  163 (310)
                      +.+.++.+.++||+.|+ .+..+..+++...+.+ .+.+ +.+.++++               ++ +.++.+.+.|++.+
T Consensus        87 ~~~~~~~~~~~Ga~~v~iGs~~~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i  166 (241)
T PRK13585         87 SAEDAASLLDLGVDRVILGTAAVENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSI  166 (241)
T ss_pred             CHHHHHHHHHcCCCEEEEChHHhhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEE
Confidence            77889999999999988 4433333333444433 2222 33444543               22 23445556677766


Q ss_pred             EEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHH
Q 037779          164 RTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ  243 (310)
Q Consensus       164 ~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~  243 (310)
                      .++..                          +.++.     ..+.++++++.+.+..++||  +++|||.+++|+.++.+
T Consensus       167 ~~~~~--------------------------~~~g~-----~~g~~~~~i~~i~~~~~iPv--ia~GGI~~~~di~~~~~  213 (241)
T PRK13585        167 LFTNV--------------------------DVEGL-----LEGVNTEPVKELVDSVDIPV--IASGGVTTLDDLRALKE  213 (241)
T ss_pred             EEEee--------------------------cCCCC-----cCCCCHHHHHHHHHhCCCCE--EEeCCCCCHHHHHHHHH
Confidence            65422                          11110     12346888888888778999  67899999999999999


Q ss_pred             cCCCEEEEccccccCCCHHHHH
Q 037779          244 LGCDGVFVGSGVFKSGDPVRRA  265 (310)
Q Consensus       244 ~GadgV~VGsai~~~~dp~~~~  265 (310)
                      +|+++|++||+++..+.....+
T Consensus       214 ~Ga~gv~vgsa~~~~~~~~~~~  235 (241)
T PRK13585        214 AGAAGVVVGSALYKGKFTLEEA  235 (241)
T ss_pred             cCCCEEEEEHHHhcCCcCHHHH
Confidence            9999999999999987654443

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=99.65  E-value=2e-14  Score=129.16  Aligned_cols=192  Identities=22%  Similarity=0.260  Sum_probs=129.1

Q ss_pred             cceeeecCCcccc----CCCH-HHHHHHHHcCCcEEEecccccchhh-hcCCCCCCCChHHHHHHHhhcCcceEeecccc
Q 037779           29 GLAQMLRGGVIMD----VVTP-EQARIAEEAGACAVMALERVPADIR-AQGGVARMSDPQLIKQIKSSVTIPVMAKARIG  102 (310)
Q Consensus        29 ~~~~~l~~g~i~~----~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r-~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~  102 (310)
                      +.++++..|+...    ..+| +.++.|.+.|++++++.     |.. .+.|.  ..+.+.++++++.+++|+++.+++.
T Consensus        12 g~~v~~~~G~~~~~~~~~~~~~~~a~~~~~~g~~~i~v~-----dld~~~~g~--~~~~~~i~~i~~~~~~pv~~~GGI~   84 (233)
T PRK00748         12 GKCVRLYQGDYDQATVYSDDPVAQAKAWEDQGAKWLHLV-----DLDGAKAGK--PVNLELIEAIVKAVDIPVQVGGGIR   84 (233)
T ss_pred             CeEEEccccccccceEecCCHHHHHHHHHHcCCCEEEEE-----eCCccccCC--cccHHHHHHHHHHCCCCEEEcCCcC
Confidence            3444455555443    2354 78999999999998665     332 22332  4578899999999999999999998


Q ss_pred             chHHHHHHHHcCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecC---------------CHHHHH-HHHHhCCCEEE
Q 037779          103 HFVEAQILEAIGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCR---------------NLGESL-RRIREGAAMIR  164 (310)
Q Consensus       103 ~~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~---------------t~~ea~-~a~~~Gad~I~  164 (310)
                      +.++++.+.++||+.|+ .+..++.++..+.+.+ ..-.+.+.++++               ++.|.. ...+.|++.+.
T Consensus        85 ~~ed~~~~~~~Ga~~vilg~~~l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii  164 (233)
T PRK00748         85 SLETVEALLDAGVSRVIIGTAAVKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAII  164 (233)
T ss_pred             CHHHHHHHHHcCCCEEEECchHHhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEE
Confidence            88889999999999987 4444443333443433 211244444442               112222 22334555444


Q ss_pred             EecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc
Q 037779          165 TKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL  244 (310)
Q Consensus       165 v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~  244 (310)
                      ++.                          .++++.     ..+.++++++.+++..++|+  |++|||.|++|+.++++.
T Consensus       165 ~~~--------------------------~~~~g~-----~~G~d~~~i~~l~~~~~ipv--ia~GGi~~~~di~~~~~~  211 (233)
T PRK00748        165 YTD--------------------------ISRDGT-----LSGPNVEATRELAAAVPIPV--IASGGVSSLDDIKALKGL  211 (233)
T ss_pred             Eee--------------------------ecCcCC-----cCCCCHHHHHHHHHhCCCCE--EEeCCCCCHHHHHHHHHc
Confidence            431                          122211     12457899999988778999  789999999999999998


Q ss_pred             C-CCEEEEccccccCCC
Q 037779          245 G-CDGVFVGSGVFKSGD  260 (310)
Q Consensus       245 G-adgV~VGsai~~~~d  260 (310)
                      | ++||++|++|+....
T Consensus       212 g~~~gv~vg~a~~~~~~  228 (233)
T PRK00748        212 GAVEGVIVGRALYEGKF  228 (233)
T ss_pred             CCccEEEEEHHHHcCCc
Confidence            8 999999999998753

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=99.65  E-value=2.4e-14  Score=128.45  Aligned_cols=193  Identities=23%  Similarity=0.262  Sum_probs=129.9

Q ss_pred             cceeeecCCcccc----CCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccc
Q 037779           29 GLAQMLRGGVIMD----VVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGH  103 (310)
Q Consensus        29 ~~~~~l~~g~i~~----~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~  103 (310)
                      +.++++.+|....    ..+| +.|+.|.+.|+++++++    +....+.|.  ..+.+.++++++.+++|+++++++.+
T Consensus        10 g~~v~~~~G~~~~~~~~~~dp~~~a~~~~~~g~~~l~v~----dl~~~~~g~--~~~~~~i~~i~~~~~~pi~~ggGI~~   83 (230)
T TIGR00007        10 GKCVRLYQGDYDKETVYGDDPVEAAKKWEEEGAERIHVV----DLDGAKEGG--PVNLPVIKKIVRETGVPVQVGGGIRS   83 (230)
T ss_pred             CEEEEeeccccCcceEecCCHHHHHHHHHHcCCCEEEEE----eCCccccCC--CCcHHHHHHHHHhcCCCEEEeCCcCC
Confidence            4445555555332    2355 78999999999999776    222233333  45688999999999999999999988


Q ss_pred             hHHHHHHHHcCCCeee-ecCCCC-hhHHHHHHHhcCCC-CcEEeecC---------------CHHH-HHHHHHhCCCEEE
Q 037779          104 FVEAQILEAIGVDYVD-ESEVLT-PADEENHINKHNFR-VPFVCGCR---------------NLGE-SLRRIREGAAMIR  164 (310)
Q Consensus       104 ~~~~~~~~~aGad~v~-~~~~~~-~~~~~~~~~~~~~~-l~v~~~v~---------------t~~e-a~~a~~~Gad~I~  164 (310)
                      .++++.+.++||+.++ .+..+. +..+.+..+..+.. +.+.++++               ++.+ ++...+.|++.+.
T Consensus        84 ~ed~~~~~~~Ga~~vvlgs~~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii  163 (230)
T TIGR00007        84 LEDVEKLLDLGVDRVIIGTAAVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGII  163 (230)
T ss_pred             HHHHHHHHHcCCCEEEEChHHhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEE
Confidence            8889999999999987 433333 34444444444322 33333322               2222 3334456666544


Q ss_pred             EecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc
Q 037779          165 TKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL  244 (310)
Q Consensus       165 v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~  244 (310)
                      ++..                          +.++.     ..+.++++++.+.+..++|+  +++|||.+++|+.+++++
T Consensus       164 ~~~~--------------------------~~~g~-----~~g~~~~~i~~i~~~~~ipv--ia~GGi~~~~di~~~~~~  210 (230)
T TIGR00007       164 YTDI--------------------------SRDGT-----LSGPNFELTKELVKAVNVPV--IASGGVSSIDDLIALKKL  210 (230)
T ss_pred             EEee--------------------------cCCCC-----cCCCCHHHHHHHHHhCCCCE--EEeCCCCCHHHHHHHHHC
Confidence            4311                          11111     12446888888888778999  789999999999999999


Q ss_pred             CCCEEEEccccccCCC
Q 037779          245 GCDGVFVGSGVFKSGD  260 (310)
Q Consensus       245 GadgV~VGsai~~~~d  260 (310)
                      ||+||++||+++...-
T Consensus       211 Gadgv~ig~a~~~~~~  226 (230)
T TIGR00007       211 GVYGVIVGKALYEGKI  226 (230)
T ss_pred             CCCEEEEeHHHHcCCC
Confidence            9999999999998653

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=99.64  E-value=3.1e-14  Score=129.06  Aligned_cols=206  Identities=17%  Similarity=0.172  Sum_probs=148.7

Q ss_pred             ccceeeecCCcccc-------------C----CCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHh
Q 037779           28 VGLAQMLRGGVIMD-------------V----VTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS   89 (310)
Q Consensus        28 ~~~~~~l~~g~i~~-------------~----~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~   89 (310)
                      .+.+++|.+|....             .    .+| ++|+.|.+.|+++++..     |...  |  ...|.+.+++|++
T Consensus        11 ~Gk~VrL~~G~~~~~~~~~~~~~~~~~~y~~~~dP~~~A~~~~~~Ga~~lHvV-----DLdg--g--~~~n~~~i~~i~~   81 (262)
T PLN02446         11 KGKVKQIVGSTLKDSKDGSEDGSELVTNFESDKSAAEFAEMYKRDGLTGGHVI-----MLGA--D--DASLAAALEALRA   81 (262)
T ss_pred             CCEEEEeeCccccccccccccCCCceEEeCCCCCHHHHHHHHHHCCCCEEEEE-----ECCC--C--CcccHHHHHHHHh
Confidence            57788999998844             1    355 89999999999998765     2221  2  2456889999998


Q ss_pred             hcCcceEeeccccchHHHHHHHHcCCCeee-ecCCCC-----hhHHHHHHHhcCCC-CcEEeecCCHHHHHHHHHhCCCE
Q 037779           90 SVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEVLT-----PADEENHINKHNFR-VPFVCGCRNLGESLRRIREGAAM  162 (310)
Q Consensus        90 ~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~~~-----~~~~~~~~~~~~~~-l~v~~~v~t~~ea~~a~~~Gad~  162 (310)
                       +.+||.+...+.. +.++.++++||+.|. .+...+     |..+.+.+++.+.. +.+.++++-        ..|--.
T Consensus        82 -~~~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~--------~~g~~~  151 (262)
T PLN02446         82 -YPGGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFRDGQIDLERLKDLVRLVGKQRLVLDLSCRK--------KDGRYY  151 (262)
T ss_pred             -CCCCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEe--------cCCCEE
Confidence             8899999988875 889999999999998 443333     44444444444443 455555531        113225


Q ss_pred             EEEecCCC-CC-chHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHH
Q 037779          163 IRTKGEAG-TG-NIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM  240 (310)
Q Consensus       163 I~v~g~~~-~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~  240 (310)
                      |.++|+.. ++ +..+.+....+.+.....++.+++|+++     .+++.++++.+.+..++||  ||+|||+|.+|+.+
T Consensus       152 Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl-----~G~d~el~~~l~~~~~ipV--IASGGv~sleDi~~  224 (262)
T PLN02446        152 VVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKR-----LGIDEELVALLGEHSPIPV--TYAGGVRSLDDLER  224 (262)
T ss_pred             EEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcc-----cCCCHHHHHHHHhhCCCCE--EEECCCCCHHHHHH
Confidence            67777743 22 3334445555555566677778888763     5778999999999889999  78999999999999


Q ss_pred             HHHc--CCCEEEEcccc--ccCC
Q 037779          241 MMQL--GCDGVFVGSGV--FKSG  259 (310)
Q Consensus       241 ~~~~--GadgV~VGsai--~~~~  259 (310)
                      +.++  |..++++|++|  |...
T Consensus       225 L~~~g~g~~gvIvGkAl~~y~g~  247 (262)
T PLN02446        225 VKVAGGGRVDVTVGSALDIFGGN  247 (262)
T ss_pred             HHHcCCCCEEEEEEeeHHHhCCC
Confidence            9997  58999999999  7655

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=99.64  E-value=1.4e-14  Score=130.54  Aligned_cols=205  Identities=14%  Similarity=0.123  Sum_probs=145.1

Q ss_pred             ccceeeecCCccccC----CCH-HHHHHHHH-cCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccc
Q 037779           28 VGLAQMLRGGVIMDV----VTP-EQARIAEE-AGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARI  101 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~----~~~-~~a~~~~~-~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i  101 (310)
                      .+.+++|++|.....    .+| +.|+.|.+ .||+++++.   +.|. .+.|.  ..|.+.++++++.+++|+.+...+
T Consensus        12 ~G~~Vr~~~G~~~~~~~~~~dp~~~a~~~~~~~Ga~~l~iv---DLd~-a~~~~--~~n~~~I~~i~~~~~~pi~vGGGI   85 (234)
T PRK13587         12 GSTSVRLTEGKYDSEEKMSRSAEESIAYYSQFECVNRIHIV---DLIG-AKAQH--AREFDYIKSLRRLTTKDIEVGGGI   85 (234)
T ss_pred             CCEEEEcCcccCCCceEeCCCHHHHHHHHHhccCCCEEEEE---ECcc-cccCC--cchHHHHHHHHhhcCCeEEEcCCc
Confidence            577888988887653    355 89999999 799998654   1121 22222  467899999999999999999999


Q ss_pred             cchHHHHHHHHcCCCeee-ecCCCChhHHHHHHHhcCCC-CcEEeecCCHHHHHHHHHhCCCEEEEecCCC--CCchHHH
Q 037779          102 GHFVEAQILEAIGVDYVD-ESEVLTPADEENHINKHNFR-VPFVCGCRNLGESLRRIREGAAMIRTKGEAG--TGNIVEA  177 (310)
Q Consensus       102 ~~~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~~~~~-l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~--~~~~~~~  177 (310)
                      .+.+.++.+.++||+.+. .+..++.+++.+.+.+.+.+ +.+.++++.          |  .+.++|+..  ..+..+.
T Consensus        86 rs~e~v~~~l~~Ga~kvvigt~a~~~~~~l~~~~~~fg~~ivvslD~~~----------g--~v~~~gw~~~~~~~~~~~  153 (234)
T PRK13587         86 RTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGRIYLSVDAYG----------E--DIKVNGWEEDTELNLFSF  153 (234)
T ss_pred             CCHHHHHHHHHCCCCEEEECchHhcCHHHHHHHHHHcCCCEEEEEEeeC----------C--EEEecCCcccCCCCHHHH
Confidence            888999999999999987 55555555666666553323 334444322          1  334444421  1233455


Q ss_pred             HHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          178 VRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       178 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                      ++...+++.....+..++.|++     ..+.+.++++.+.+..++||  +++|||.+++|+.+++++|+++|++||++++
T Consensus       154 ~~~~~~~g~~~ii~tdi~~dGt-----~~G~~~~li~~l~~~~~ipv--i~~GGi~s~edi~~l~~~G~~~vivG~a~~~  226 (234)
T PRK13587        154 VRQLSDIPLGGIIYTDIAKDGK-----MSGPNFELTGQLVKATTIPV--IASGGIRHQQDIQRLASLNVHAAIIGKAAHQ  226 (234)
T ss_pred             HHHHHHcCCCEEEEecccCcCC-----CCccCHHHHHHHHHhCCCCE--EEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence            5555555544445555666654     24667888999988778999  7799999999999999999999999999997

>cd04732 HisA HisA

Probab=99.64  E-value=4.9e-14  Score=126.57  Aligned_cols=194  Identities=25%  Similarity=0.294  Sum_probs=131.0

Q ss_pred             ccceeeecCCcccc----CCCH-HHHHHHHHcCCcEEEecccccchh-hhcCCCCCCCChHHHHHHHhhcCcceEeeccc
Q 037779           28 VGLAQMLRGGVIMD----VVTP-EQARIAEEAGACAVMALERVPADI-RAQGGVARMSDPQLIKQIKSSVTIPVMAKARI  101 (310)
Q Consensus        28 ~~~~~~l~~g~i~~----~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~-r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i  101 (310)
                      .+.++++.+|....    ..+| ++|+.|.+.|++++++.     |. +.+.|  ...+.+.++++++.+++|+++..++
T Consensus        10 ~g~~v~~~~G~~~~~~~~~~dp~~~a~~~~~~g~d~l~v~-----dl~~~~~~--~~~~~~~i~~i~~~~~~pv~~~GgI   82 (234)
T cd04732          10 DGKCVRLYQGDYDKKTVYSDDPVEVAKKWEEAGAKWLHVV-----DLDGAKGG--EPVNLELIEEIVKAVGIPVQVGGGI   82 (234)
T ss_pred             CCEEEEeecccCCCCeEECCCHHHHHHHHHHcCCCEEEEE-----CCCccccC--CCCCHHHHHHHHHhcCCCEEEeCCc
Confidence            45566666666532    3454 89999999999998655     22 12222  2346889999999999999999999


Q ss_pred             cchHHHHHHHHcCCCeee-ecCCCChhHHHHHHHh-cCC-CCcEEeec---------------CCHHHHH-HHHHhCCCE
Q 037779          102 GHFVEAQILEAIGVDYVD-ESEVLTPADEENHINK-HNF-RVPFVCGC---------------RNLGESL-RRIREGAAM  162 (310)
Q Consensus       102 ~~~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~-~~~-~l~v~~~v---------------~t~~ea~-~a~~~Gad~  162 (310)
                      .+.+.++.+.+.|||.|. .+..+..+++.+.+.+ .+. .+.+.+++               .++.+.. ...+.|++.
T Consensus        83 ~~~e~~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~  162 (234)
T cd04732          83 RSLEDIERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKA  162 (234)
T ss_pred             CCHHHHHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCE
Confidence            888889999999999987 3433333344444433 222 12222221               1222332 334556666


Q ss_pred             EEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHH
Q 037779          163 IRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM  242 (310)
Q Consensus       163 I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~  242 (310)
                      +.++..                          +.++.     ..+.++++++.+.+..++||  +++|||.+++|+.+++
T Consensus       163 iii~~~--------------------------~~~g~-----~~g~~~~~i~~i~~~~~ipv--i~~GGi~~~~di~~~~  209 (234)
T cd04732         163 IIYTDI--------------------------SRDGT-----LSGPNFELYKELAAATGIPV--IASGGVSSLDDIKALK  209 (234)
T ss_pred             EEEEee--------------------------cCCCc-----cCCCCHHHHHHHHHhcCCCE--EEecCCCCHHHHHHHH
Confidence            655422                          11111     12356889999988778999  6799999999999999


Q ss_pred             HcCCCEEEEccccccCCCH
Q 037779          243 QLGCDGVFVGSGVFKSGDP  261 (310)
Q Consensus       243 ~~GadgV~VGsai~~~~dp  261 (310)
                      +.|++||++||+++....+
T Consensus       210 ~~Ga~gv~vg~~~~~~~~~  228 (234)
T cd04732         210 ELGVAGVIVGKALYEGKIT  228 (234)
T ss_pred             HCCCCEEEEeHHHHcCCCC
Confidence            9999999999999997643

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=99.61  E-value=5.7e-14  Score=126.54  Aligned_cols=205  Identities=20%  Similarity=0.236  Sum_probs=139.7

Q ss_pred             ccceeeecCCccc----------cCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceE
Q 037779           28 VGLAQMLRGGVIM----------DVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVM   96 (310)
Q Consensus        28 ~~~~~~l~~g~i~----------~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~   96 (310)
                      .+.++++.+|...          ...+| ++|+.|.+.|+++++..     |.....|  ...+.+.++++.+.+.+|++
T Consensus        10 ~G~~V~~~~G~~~~~~p~~~~~~~~~dp~~~a~~~~~~g~~~l~i~-----DLd~~~~--~~~n~~~i~~i~~~~~~~v~   82 (233)
T cd04723          10 DGVVVHGVGGDRDNYRPITSNLCSTSDPLDVARAYKELGFRGLYIA-----DLDAIMG--RGDNDEAIRELAAAWPLGLW   82 (233)
T ss_pred             CCEEEEeeccChhhccccccCcccCCCHHHHHHHHHHCCCCEEEEE-----eCccccC--CCccHHHHHHHHHhCCCCEE
Confidence            4667777776643          22355 89999999999998554     2221112  24568899999999999999


Q ss_pred             eeccccchHHHHHHHHcCCCeee-ecCCCChhHHHHHHHh-cCC-CCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCc
Q 037779           97 AKARIGHFVEAQILEAIGVDYVD-ESEVLTPADEENHINK-HNF-RVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGN  173 (310)
Q Consensus        97 ~kd~i~~~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~-~~~-~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~  173 (310)
                      +...+...+.++.+..+||+.+. .+...+. ++.+.+.+ .+- .+.+.++++...-            . + .....+
T Consensus        83 vgGGir~~edv~~~l~~Ga~~viigt~~~~~-~~~~~~~~~~~~~~iivslD~~~~~~------------~-~-~~~~~~  147 (233)
T cd04723          83 VDGGIRSLENAQEWLKRGASRVIVGTETLPS-DDDEDRLAALGEQRLVLSLDFRGGQL------------L-K-PTDFIG  147 (233)
T ss_pred             EecCcCCHHHHHHHHHcCCCeEEEcceeccc-hHHHHHHHhcCCCCeEEEEeccCCee------------c-c-ccCcCC
Confidence            99999888899999999999987 5555444 55444443 322 3445555533100            0 1 111123


Q ss_pred             hHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779          174 IVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       174 ~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs  253 (310)
                      ..+.++...+. .+...+..++.++.     ..+.+.++++.+.+..++||  +++|||.|++|+.++++.|+++|++||
T Consensus       148 ~~~~~~~~~~~-~~~li~~di~~~G~-----~~g~~~~~~~~i~~~~~ipv--i~~GGi~s~edi~~l~~~G~~~vivGs  219 (233)
T cd04723         148 PEELLRRLAKW-PEELIVLDIDRVGS-----GQGPDLELLERLAARADIPV--IAAGGVRSVEDLELLKKLGASGALVAS  219 (233)
T ss_pred             HHHHHHHHHHh-CCeEEEEEcCcccc-----CCCcCHHHHHHHHHhcCCCE--EEeCCCCCHHHHHHHHHcCCCEEEEeh
Confidence            44555555555 44344444444432     23567888888888778999  679999999999999999999999999


Q ss_pred             ccccCCCHH
Q 037779          254 GVFKSGDPV  262 (310)
Q Consensus       254 ai~~~~dp~  262 (310)
                      +++...-+.
T Consensus       220 al~~g~~~~  228 (233)
T cd04723         220 ALHDGGLTL  228 (233)
T ss_pred             HHHcCCCCH
Confidence            999986443

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=99.61  E-value=3.9e-14  Score=125.15  Aligned_cols=186  Identities=21%  Similarity=0.276  Sum_probs=122.2

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeecCCC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVL  124 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~~  124 (310)
                      .+.++.+.++|+++++ ++     .....+.........++.++...++++++++      .++.+.++|+|+++.+...
T Consensus        24 ~~~~~~~~~~gv~~v~-lr-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~------~~~~a~~~gad~vh~~~~~   91 (212)
T PRK00043         24 LEVVEAALEGGVTLVQ-LR-----EKGLDTRERLELARALKELCRRYGVPLIVND------RVDLALAVGADGVHLGQDD   91 (212)
T ss_pred             HHHHHHHHhcCCCEEE-Ee-----CCCCCHHHHHHHHHHHHHHHHHhCCeEEEeC------hHHHHHHcCCCEEecCccc
Confidence            3678889999999984 42     1100000000012223333344577887653      4567888999999854221


Q ss_pred             ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779          125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK  204 (310)
Q Consensus       125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  204 (310)
                      .+....+.+  ++.+..+.+.+||..|+.++.+.|+|+|++.....+..                     .++      .
T Consensus        92 ~~~~~~~~~--~~~~~~~g~~~~t~~e~~~a~~~gaD~v~~~~~~~~~~---------------------~~~------~  142 (212)
T PRK00043         92 LPVADARAL--LGPDAIIGLSTHTLEEAAAALAAGADYVGVGPIFPTPT---------------------KKD------A  142 (212)
T ss_pred             CCHHHHHHH--cCCCCEEEEeCCCHHHHHHHhHcCCCEEEECCccCCCC---------------------CCC------C
Confidence            121222212  34667888999999999999999999998752211110                     000      0


Q ss_pred             cCCCcHHHHHHHHhcCC-CCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          205 NIAAPYDLVMQTKQLGR-LPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       205 ~~~~~~~l~~~i~~~~~-iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      .....++.++.+++..+ +||  ++.||| +++++.+++++|+++|++||+|++++||.+.++++++.++.
T Consensus       143 ~~~~g~~~~~~~~~~~~~~~v--~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~~~~~  210 (212)
T PRK00043        143 KAPQGLEGLREIRAAVGDIPI--VAIGGI-TPENAPEVLEAGADGVAVVSAITGAEDPEAAARALLAAFRA  210 (212)
T ss_pred             CCCCCHHHHHHHHHhcCCCCE--EEECCc-CHHHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHHHHhh
Confidence            00112667777776544 899  567999 69999999999999999999999999999999999887764

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=99.60  E-value=1.7e-13  Score=121.13  Aligned_cols=172  Identities=19%  Similarity=0.213  Sum_probs=125.2

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecc-ccchHHHHHHHHcCCCeeeecCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKAR-IGHFVEAQILEAIGVDYVDESEVL  124 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~-i~~~~~~~~~~~aGad~v~~~~~~  124 (310)
                      +.++++.++|+..+ .+       +...    ....+.++.+++...-++.+.-. +.+.++++.+.++||++++.+.. 
T Consensus        26 ~~~~a~~~gGi~~i-Ev-------t~~~----~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~-   92 (206)
T PRK09140         26 AHVGALIEAGFRAI-EI-------PLNS----PDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPNT-   92 (206)
T ss_pred             HHHHHHHHCCCCEE-EE-------eCCC----ccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCCC-
Confidence            67999999999988 33       2221    11155788888777544444322 22447889999999999985432 


Q ss_pred             ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779          125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK  204 (310)
Q Consensus       125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  204 (310)
                       ..++.+....  .+++++.+++|++|+..+.+.|+||++++..   .                                
T Consensus        93 -~~~v~~~~~~--~~~~~~~G~~t~~E~~~A~~~Gad~vk~Fpa---~--------------------------------  134 (206)
T PRK09140         93 -DPEVIRRAVA--LGMVVMPGVATPTEAFAALRAGAQALKLFPA---S--------------------------------  134 (206)
T ss_pred             -CHHHHHHHHH--CCCcEEcccCCHHHHHHHHHcCCCEEEECCC---C--------------------------------
Confidence             3455554543  5789999999999999999999999998521   0                                


Q ss_pred             cCCCcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC----CCHHHHHHHHHHHHH
Q 037779          205 NIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS----GDPVRRARAIVQAVT  273 (310)
Q Consensus       205 ~~~~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~----~dp~~~~~~~~~~~~  273 (310)
                        ....+.++.+++..  ++|++  +.||| +++++.+++++|+++|.+||+|+++    +++.+.++++++.++
T Consensus       135 --~~G~~~l~~l~~~~~~~ipvv--aiGGI-~~~n~~~~~~aGa~~vav~s~l~~~~~~~~~i~~~a~~~~~~~~  204 (206)
T PRK09140        135 --QLGPAGIKALRAVLPPDVPVF--AVGGV-TPENLAPYLAAGAAGFGLGSALYRPGQSAEEVAERARAFVAAYR  204 (206)
T ss_pred             --CCCHHHHHHHHhhcCCCCeEE--EECCC-CHHHHHHHHHCCCeEEEEehHhcccccChHHHHHHHHHHHHHHh
Confidence              01244556665543  48995  56999 6999999999999999999999986    678888888877664

>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences

Probab=99.59  E-value=7.5e-15  Score=129.29  Aligned_cols=154  Identities=27%  Similarity=0.417  Sum_probs=107.3

Q ss_pred             HHHHHHHhcCCC-CcEEeecCCHHHHHHHHH-----hCCCEEEEe--cCCCC--CchHHHHHHHHHhhcc-eecccccCc
Q 037779          128 DEENHINKHNFR-VPFVCGCRNLGESLRRIR-----EGAAMIRTK--GEAGT--GNIVEAVRHVRSVMGD-IRVLRNMDD  196 (310)
Q Consensus       128 ~~~~~~~~~~~~-l~v~~~v~t~~ea~~a~~-----~Gad~I~v~--g~~~~--~~~~~~~~~~~~~~~~-~~~l~~~~~  196 (310)
                      .+.+.+...++. ++...+|+|.+|+.+..+     .|-++|++.  +..++  ++..+++++++++.++ |.+++|+++
T Consensus        53 ~~~~~i~~~~~~lLPNTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~  132 (247)
T PF05690_consen   53 NILDYIDRSGYTLLPNTAGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTD  132 (247)
T ss_dssp             HCCCCTTCCTSEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S
T ss_pred             cHHHHhcccCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCC
Confidence            344444433444 677788999999987664     366899864  44432  6778999999999997 999999999


Q ss_pred             hhHHhh-------------------hccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          197 DEVFTF-------------------AKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       197 d~~~~~-------------------~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                      |+++..                   .+++. +...++.+.+..++||  |+.+||++|+|+.+++++|||+|++.|+|.+
T Consensus       133 D~v~akrL~d~GcaavMPlgsPIGSg~Gi~-n~~~l~~i~~~~~vPv--IvDAGiG~pSdaa~AMElG~daVLvNTAiA~  209 (247)
T PF05690_consen  133 DPVLAKRLEDAGCAAVMPLGSPIGSGRGIQ-NPYNLRIIIERADVPV--IVDAGIGTPSDAAQAMELGADAVLVNTAIAK  209 (247)
T ss_dssp             -HHHHHHHHHTT-SEBEEBSSSTTT---SS-THHHHHHHHHHGSSSB--EEES---SHHHHHHHHHTT-SEEEESHHHHT
T ss_pred             CHHHHHHHHHCCCCEEEecccccccCcCCC-CHHHHHHHHHhcCCcE--EEeCCCCCHHHHHHHHHcCCceeehhhHHhc
Confidence            999652                   22333 3456667766668999  5589999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCChhhHHhh
Q 037779          258 SGDPVRRARAIVQAVTNYSDPDVLAEV  284 (310)
Q Consensus       258 ~~dp~~~~~~~~~~~~~~~~~~~~~~~  284 (310)
                      +.||..|+++|+.++++.+.......+
T Consensus       210 A~dPv~MA~Af~~AV~AGR~a~~AG~~  236 (247)
T PF05690_consen  210 AKDPVAMARAFKLAVEAGRLAYLAGRM  236 (247)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHHHHH---
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999987765544443

ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.

>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

Probab=99.59  E-value=1e-13  Score=125.18  Aligned_cols=202  Identities=16%  Similarity=0.176  Sum_probs=146.0

Q ss_pred             ccceeeecCCccccC------C------C-HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcc
Q 037779           28 VGLAQMLRGGVIMDV------V------T-PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIP   94 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~------~------~-~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lP   94 (310)
                      .+.+++|.+|.....      .      + .++|+.|.+.||++++..     |.    |.  . |.+.++++.+.+++|
T Consensus        11 ~Gk~VrL~qG~~~~~~~~~~~~~~y~~~pp~~~A~~~~~~Ga~~lHvV-----DL----g~--~-n~~~i~~i~~~~~~~   78 (253)
T TIGR02129        11 NGKVKQIVGGTLTSKKGSVLKTNFVSDKPSSYYAKLYKDDGVKGCHVI-----ML----GP--N-NDDAAKEALHAYPGG   78 (253)
T ss_pred             CCEEEEeeCcCccccccCCcceEEecCCCHHHHHHHHHHcCCCEEEEE-----EC----CC--C-cHHHHHHHHHhCCCC
Confidence            577889999887644      2      2 379999999999999765     33    22  2 689999999999999


Q ss_pred             eEeeccccchHHHHHHHHcCCCeee-ecCCCC-----hhHHHHHHHhcCCC-CcEEeecCCHHHHHHHHHhCCCEEEEec
Q 037779           95 VMAKARIGHFVEAQILEAIGVDYVD-ESEVLT-----PADEENHINKHNFR-VPFVCGCRNLGESLRRIREGAAMIRTKG  167 (310)
Q Consensus        95 v~~kd~i~~~~~~~~~~~aGad~v~-~~~~~~-----~~~~~~~~~~~~~~-l~v~~~v~t~~ea~~a~~~Gad~I~v~g  167 (310)
                      +.+...+.. +.++.++++||+.|. .+...+     +..+.+..++.+.+ +.+.++++-.       +.|--.+.++|
T Consensus        79 v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~~~~i~~~~~~~i~~~fG~~~IvvsiD~k~~-------~~g~~~V~~~G  150 (253)
T TIGR02129        79 LQVGGGIND-TNAQEWLDEGASHVIVTSWLFTKGKFDLKRLKEIVSLVGKDRLIVDLSCRKT-------QDGRWIVAMNK  150 (253)
T ss_pred             EEEeCCcCH-HHHHHHHHcCCCEEEECcHHHhCCCCCHHHHHHHHHHhCCCCEEEEEEEEEc-------CCCcEEEEECC
Confidence            999998876 889999999999987 332222     33444444444433 5555555300       01222566666


Q ss_pred             CCC-CC-chH-HHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc
Q 037779          168 EAG-TG-NIV-EAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL  244 (310)
Q Consensus       168 ~~~-~~-~~~-~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~  244 (310)
                      +.. ++ +.. +.++...+. .....++.+++|+++     .+++.++++.+.+..++||  ||+||+++.+|+.++.+.
T Consensus       151 W~~~t~~~~~~e~~~~~~~~-~~~il~TdI~rDGtl-----~G~dlel~~~l~~~~~ipV--IASGGv~s~eDi~~l~~~  222 (253)
T TIGR02129       151 WQTITDLELNAETLEELSKY-CDEFLIHAADVEGLC-----KGIDEELVSKLGEWSPIPI--TYAGGAKSIDDLDLVDEL  222 (253)
T ss_pred             CcccCCCChHHHHHHHHHhh-CCEEEEeeecccCcc-----ccCCHHHHHHHHhhCCCCE--EEECCCCCHHHHHHHHHh
Confidence            643 22 334 555666555 566677788888874     5778999999999889999  789999999999999665


Q ss_pred             --CCCEEEEcccccc
Q 037779          245 --GCDGVFVGSGVFK  257 (310)
Q Consensus       245 --GadgV~VGsai~~  257 (310)
                        |..++++|++|+.
T Consensus       223 ~~g~~~aIvG~Alf~  237 (253)
T TIGR02129       223 SKGKVDLTIGSALDI  237 (253)
T ss_pred             cCCCCcEEeeehHHH
Confidence              7888999999886

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=99.59  E-value=2.1e-13  Score=123.57  Aligned_cols=209  Identities=14%  Similarity=0.039  Sum_probs=149.4

Q ss_pred             ccceeeecCCcc---ccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccc
Q 037779           28 VGLAQMLRGGVI---MDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGH  103 (310)
Q Consensus        28 ~~~~~~l~~g~i---~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~  103 (310)
                      .+.+++|.+|..   ....+| +.++.+.+.|+.+++..   ..|. .+ |.  ..|.+.++++.+.+.+|+.+...+.+
T Consensus        13 ~G~vVrl~~G~~~~~~~y~~p~~~a~~~~~~g~~~lhiv---DLd~-a~-g~--~~n~~~i~~i~~~~~~~v~vgGGIrs   85 (243)
T TIGR01919        13 GGAAVRLQQGAGGSKTYYGSLESAAKWWEQGGAEWIHLV---DLDA-AF-GG--GNNEMMLEEVVKLLVVVEELSGGRRD   85 (243)
T ss_pred             CCEEEEeecCCCCCceecCCHHHHHHHHHhCCCeEEEEE---ECCC-CC-CC--cchHHHHHHHHHHCCCCEEEcCCCCC
Confidence            567888888853   233466 78999999999987432   1122 12 22  45688999999999999999999988


Q ss_pred             hHHHHHHHHcCCCeee-ecCCCChhHHHHHHHhcCCC-CcEEeecCCHHHHHHHHHhC-CCEEEEecCCCCC-chHHHHH
Q 037779          104 FVEAQILEAIGVDYVD-ESEVLTPADEENHINKHNFR-VPFVCGCRNLGESLRRIREG-AAMIRTKGEAGTG-NIVEAVR  179 (310)
Q Consensus       104 ~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~~~~~-l~v~~~v~t~~ea~~a~~~G-ad~I~v~g~~~~~-~~~~~~~  179 (310)
                      .+.++.+.++||+.|. .+...+.+++.+.+.+...+ +.+.++++.         .| -..+.++|+..++ .+.+.++
T Consensus        86 ~e~~~~~l~~Ga~~vvigT~a~~~p~~~~~~~~~~g~~ivvslD~k~---------~g~~~~v~~~Gw~~~~~~~~~~~~  156 (243)
T TIGR01919        86 DSSLRAALTGGRARVNGGTAALENPWWAAAVIRYGGDIVAVGLDVLE---------DGEWHTLGNRGWSDGGGDLEVLER  156 (243)
T ss_pred             HHHHHHHHHcCCCEEEECchhhCCHHHHHHHHHHccccEEEEEEEec---------CCceEEEECCCeecCCCcHHHHHH
Confidence            8899999999999988 55544555555555443223 444444431         12 1245555664332 4556677


Q ss_pred             HHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHH---HcCCCEEEEccccc
Q 037779          180 HVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM---QLGCDGVFVGSGVF  256 (310)
Q Consensus       180 ~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~---~~GadgV~VGsai~  256 (310)
                      ...+++.....+..++.|++     ..+++.++++.+.+..++||  |++|||++.+|+.++.   +.|++||++|++|+
T Consensus       157 ~~~~~g~~~ii~tdI~~dGt-----~~G~d~~l~~~l~~~~~~pv--iasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~  229 (243)
T TIGR01919       157 LLDSGGCSRVVVTDSKKDGL-----SGGPNELLLEVVAARTDAIV--AASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLY  229 (243)
T ss_pred             HHHhCCCCEEEEEecCCccc-----CCCcCHHHHHHHHhhCCCCE--EEECCcCCHHHHHHHHhhccCCeeEEEEhHHHH
Confidence            77777777667777888876     34678999999988888999  7899999999999985   35999999999999


Q ss_pred             cCC
Q 037779          257 KSG  259 (310)
Q Consensus       257 ~~~  259 (310)
                      ...
T Consensus       230 ~g~  232 (243)
T TIGR01919       230 ARF  232 (243)
T ss_pred             cCC
Confidence            876

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=99.59  E-value=3e-13  Score=122.48  Aligned_cols=184  Identities=20%  Similarity=0.241  Sum_probs=129.1

Q ss_pred             CH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-ec
Q 037779           44 TP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-ES  121 (310)
Q Consensus        44 ~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~  121 (310)
                      ++ ++++.+.+.|+++++..     |.. ..|.....+.+.++++++.+++|+++...+.+.+.++.+...|++.+. .+
T Consensus        28 d~~~~a~~~~~~G~~~i~i~-----d~~-~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~  101 (243)
T cd04731          28 DPVELAKRYNEQGADELVFL-----DIT-ASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINS  101 (243)
T ss_pred             CHHHHHHHHHHCCCCEEEEE-----cCC-cccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECc
Confidence            54 89999999999998554     221 122223456889999999999999999999888888888889999987 33


Q ss_pred             CCCChhHHHHHH-HhcCC-CCcEEeecC---------------------CHHHHHHHHHhCCCEEEEecCCCCCchHHHH
Q 037779          122 EVLTPADEENHI-NKHNF-RVPFVCGCR---------------------NLGESLRRIREGAAMIRTKGEAGTGNIVEAV  178 (310)
Q Consensus       122 ~~~~~~~~~~~~-~~~~~-~l~v~~~v~---------------------t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~  178 (310)
                      ..+..+++...+ +..+. .+.+.++++                     +.+.++.+.+.|++++.+++....++     
T Consensus       102 ~~~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~-----  176 (243)
T cd04731         102 AAVENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGT-----  176 (243)
T ss_pred             hhhhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCCCC-----
Confidence            333333433334 33221 244444432                     23344566678888888764321111     


Q ss_pred             HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEcccccc
Q 037779          179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFK  257 (310)
Q Consensus       179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~  257 (310)
                                                ..+.++++++.+++..++||  +++|||.+++++.++++. |+|+|++|++|+.
T Consensus       177 --------------------------~~g~~~~~i~~i~~~~~~pv--ia~GGi~~~~di~~~l~~~g~dgv~vg~al~~  228 (243)
T cd04731         177 --------------------------KKGYDLELIRAVSSAVNIPV--IASGGAGKPEHFVEAFEEGGADAALAASIFHF  228 (243)
T ss_pred             --------------------------CCCCCHHHHHHHHhhCCCCE--EEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHc
Confidence                                      12346888888888778999  679999999999999986 9999999999999


Q ss_pred             CCCHHHHHH
Q 037779          258 SGDPVRRAR  266 (310)
Q Consensus       258 ~~dp~~~~~  266 (310)
                      .....+.++
T Consensus       229 ~~~~~~~~~  237 (243)
T cd04731         229 GEYTIAELK  237 (243)
T ss_pred             CCCCHHHHH
Confidence            877554433

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=99.58  E-value=9.6e-15  Score=131.25  Aligned_cols=207  Identities=26%  Similarity=0.324  Sum_probs=141.4

Q ss_pred             ccceeeecCCcc----ccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc
Q 037779           28 VGLAQMLRGGVI----MDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG  102 (310)
Q Consensus        28 ~~~~~~l~~g~i----~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~  102 (310)
                      .+.+++|.+|..    .+..+| ++|+.|.+.|+++++..   +.|. .+.|.  ..|.+.++++++.+.+|+.+...+.
T Consensus        10 ~G~~Vr~~~G~~~~~~~~~~dP~~~a~~~~~~g~~~l~iv---DLda-a~~g~--~~n~~~i~~i~~~~~~~i~vgGGIr   83 (229)
T PF00977_consen   10 NGRVVRLVKGDRFSETVYSGDPVEVAKAFNEQGADELHIV---DLDA-AKEGR--GSNLELIKEIAKETGIPIQVGGGIR   83 (229)
T ss_dssp             TTEEEEESTTCCSCEECECCCHHHHHHHHHHTT-SEEEEE---EHHH-HCCTH--HHHHHHHHHHHHHSSSEEEEESSE-
T ss_pred             CCEEEECCCeecceeeEECcCHHHHHHHHHHcCCCEEEEE---EccC-cccCc--hhHHHHHHHHHhcCCccEEEeCccC
Confidence            466777777776    334555 89999999999998554   1121 22222  3457889999999999999999998


Q ss_pred             chHHHHHHHHcCCCeee-ecCCC-ChhHHHHHHHhcCC-CCcEEeecCCHHHHHHHHHhCCCEEEEecCCCC--CchHHH
Q 037779          103 HFVEAQILEAIGVDYVD-ESEVL-TPADEENHINKHNF-RVPFVCGCRNLGESLRRIREGAAMIRTKGEAGT--GNIVEA  177 (310)
Q Consensus       103 ~~~~~~~~~~aGad~v~-~~~~~-~~~~~~~~~~~~~~-~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~--~~~~~~  177 (310)
                      ..+.++.+.++||+.|+ .+..+ +|..+.+.....+. .+.+.++++.          | -.+.++|+...  -+..+.
T Consensus        84 s~ed~~~ll~~Ga~~Vvigt~~~~~~~~l~~~~~~~g~~~ivvslD~~~----------g-~~v~~~gw~~~~~~~~~~~  152 (229)
T PF00977_consen   84 SIEDAERLLDAGADRVVIGTEALEDPELLEELAERYGSQRIVVSLDARD----------G-YKVATNGWQESSGIDLEEF  152 (229)
T ss_dssp             SHHHHHHHHHTT-SEEEESHHHHHCCHHHHHHHHHHGGGGEEEEEEEEE----------T-EEEEETTTTEEEEEEHHHH
T ss_pred             cHHHHHHHHHhCCCEEEeChHHhhchhHHHHHHHHcCcccEEEEEEeee----------c-eEEEecCccccCCcCHHHH
Confidence            88899999999999977 44333 34444443433333 2555555543          2 23445555321  245677


Q ss_pred             HHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          178 VRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       178 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                      ++...+++.....+.+++.|++     ..+++.++++.+.+..++|+  |++|||++.+|+.++.+.|++||++|++|+.
T Consensus       153 ~~~~~~~g~~~ii~tdi~~dGt-----~~G~d~~~~~~l~~~~~~~v--iasGGv~~~~Dl~~l~~~G~~gvivg~al~~  225 (229)
T PF00977_consen  153 AKRLEELGAGEIILTDIDRDGT-----MQGPDLELLKQLAEAVNIPV--IASGGVRSLEDLRELKKAGIDGVIVGSALHE  225 (229)
T ss_dssp             HHHHHHTT-SEEEEEETTTTTT-----SSS--HHHHHHHHHHHSSEE--EEESS--SHHHHHHHHHTTECEEEESHHHHT
T ss_pred             HHHHHhcCCcEEEEeeccccCC-----cCCCCHHHHHHHHHHcCCCE--EEecCCCCHHHHHHHHHCCCcEEEEehHhhC
Confidence            7777777777667777777765     35678999999987778999  7899999999999999999999999999987


Q ss_pred             C
Q 037779          258 S  258 (310)
Q Consensus       258 ~  258 (310)
                      .
T Consensus       226 g  226 (229)
T PF00977_consen  226 G  226 (229)
T ss_dssp             T
T ss_pred             C
Confidence            4

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=99.58  E-value=1.7e-13  Score=123.21  Aligned_cols=204  Identities=18%  Similarity=0.168  Sum_probs=141.9

Q ss_pred             ccceeeecCCccc---cCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccc
Q 037779           28 VGLAQMLRGGVIM---DVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGH  103 (310)
Q Consensus        28 ~~~~~~l~~g~i~---~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~  103 (310)
                      .+.++++.+|...   ...+| ++|+.|.+.|+++++..   +.|. .+ |  ...+.+.++++.+....|+.+...+.+
T Consensus        12 ~G~~Vr~~~G~~~~~~~~~dP~~~a~~~~~~ga~~lhiv---DLd~-a~-~--~~~n~~~i~~i~~~~~~~v~vGGGIrs   84 (232)
T PRK13586         12 LGKAVKRIRGVKGTGLILGNPIEIASKLYNEGYTRIHVV---DLDA-AE-G--VGNNEMYIKEISKIGFDWIQVGGGIRD   84 (232)
T ss_pred             CCEEEEeeecCCCCceEcCCHHHHHHHHHHCCCCEEEEE---ECCC-cC-C--CcchHHHHHHHHhhCCCCEEEeCCcCC
Confidence            4667777777532   12465 89999999999998554   1121 12 2  234678899998854459999999988


Q ss_pred             hHHHHHHHHcCCCeee-ecCCCChhHHHHHHHh-cCCC-CcEEeec-CCHHHHHHHHHhCCCEEEEecCCCCC-chHHHH
Q 037779          104 FVEAQILEAIGVDYVD-ESEVLTPADEENHINK-HNFR-VPFVCGC-RNLGESLRRIREGAAMIRTKGEAGTG-NIVEAV  178 (310)
Q Consensus       104 ~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~-~~~~-l~v~~~v-~t~~ea~~a~~~Gad~I~v~g~~~~~-~~~~~~  178 (310)
                      .++++.+.+.||+.|. .+.....+++.+.+.+ .+.. +.+.+++ ++          |  .+.+.|+..++ .+.+.+
T Consensus        85 ~e~~~~~l~~Ga~kvvigt~a~~~p~~~~~~~~~~g~~~ivvslD~~~~----------~--~v~~~gw~~~~~~~~e~~  152 (232)
T PRK13586         85 IEKAKRLLSLDVNALVFSTIVFTNFNLFHDIVREIGSNRVLVSIDYDNT----------K--RVLIRGWKEKSMEVIDGI  152 (232)
T ss_pred             HHHHHHHHHCCCCEEEECchhhCCHHHHHHHHHHhCCCCEEEEEEcCCC----------C--EEEccCCeeCCCCHHHHH
Confidence            8899999999999987 5544444455555444 3332 3444454 22          2  55665553222 445666


Q ss_pred             HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      +...+++.....+..++.|++     ..+.+.++++.+.+. ..|+  +++|||++.+|+.++.++|++|++||++++..
T Consensus       153 ~~l~~~g~~~ii~tdI~~dGt-----~~G~d~el~~~~~~~-~~~v--iasGGv~s~~Dl~~l~~~G~~gvivg~Aly~g  224 (232)
T PRK13586        153 KKVNELELLGIIFTYISNEGT-----TKGIDYNVKDYARLI-RGLK--EYAGGVSSDADLEYLKNVGFDYIIVGMAFYLG  224 (232)
T ss_pred             HHHHhcCCCEEEEeccccccc-----CcCcCHHHHHHHHhC-CCCE--EEECCCCCHHHHHHHHHCCCCEEEEehhhhcC
Confidence            666666666667777777776     356789999988775 4465  67999999999999999999999999999964

>PRK00208 thiG thiazole synthase; Reviewed

Probab=99.58  E-value=6.8e-14  Score=124.76  Aligned_cols=151  Identities=25%  Similarity=0.373  Sum_probs=118.2

Q ss_pred             hHHHHHHHhcCCC-CcEEeecCCHHHHHHHHH-----hCCCEEEEe--cCCC--CCchHHHHHHHHHhhcc-eecccccC
Q 037779          127 ADEENHINKHNFR-VPFVCGCRNLGESLRRIR-----EGAAMIRTK--GEAG--TGNIVEAVRHVRSVMGD-IRVLRNMD  195 (310)
Q Consensus       127 ~~~~~~~~~~~~~-l~v~~~v~t~~ea~~a~~-----~Gad~I~v~--g~~~--~~~~~~~~~~~~~~~~~-~~~l~~~~  195 (310)
                      ..+.+.+...++. ++...+|+|.+|+.+..+     .+-++|++.  +..+  -+++.+++++++++.++ |.++++..
T Consensus        52 ~~~~~~i~~~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~  131 (250)
T PRK00208         52 DNLLDLLPPLGVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCT  131 (250)
T ss_pred             chHHhhccccCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeC
Confidence            4556666554455 788889999999987664     366888864  4332  35678999999999876 88998888


Q ss_pred             chhHHhh-------------------hccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc
Q 037779          196 DDEVFTF-------------------AKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF  256 (310)
Q Consensus       196 ~d~~~~~-------------------~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~  256 (310)
                      +|+....                   ..++. ..++++.+.+..++||  |++|||++++|+.+++++|||||+|||+|+
T Consensus       132 ~d~~~ak~l~~~G~~~vmPlg~pIGsg~gi~-~~~~i~~i~e~~~vpV--IveaGI~tpeda~~AmelGAdgVlV~SAIt  208 (250)
T PRK00208        132 DDPVLAKRLEEAGCAAVMPLGAPIGSGLGLL-NPYNLRIIIEQADVPV--IVDAGIGTPSDAAQAMELGADAVLLNTAIA  208 (250)
T ss_pred             CCHHHHHHHHHcCCCEeCCCCcCCCCCCCCC-CHHHHHHHHHhcCCeE--EEeCCCCCHHHHHHHHHcCCCEEEEChHhh
Confidence            7777431                   01111 4677888887667899  679999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcCCChhh
Q 037779          257 KSGDPVRRARAIVQAVTNYSDPDV  280 (310)
Q Consensus       257 ~~~dp~~~~~~~~~~~~~~~~~~~  280 (310)
                      +++||..+++.|..++++.+....
T Consensus       209 ka~dP~~ma~af~~Av~aGr~a~~  232 (250)
T PRK00208        209 VAGDPVAMARAFKLAVEAGRLAYL  232 (250)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999997665433

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=99.58  E-value=4.7e-13  Score=122.40  Aligned_cols=211  Identities=18%  Similarity=0.192  Sum_probs=130.4

Q ss_pred             ceeeecCCcccc-CCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHH
Q 037779           30 LAQMLRGGVIMD-VVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEA  107 (310)
Q Consensus        30 ~~~~l~~g~i~~-~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~  107 (310)
                      .+++++++.-.. ..+| ++|+.|.+.|+++++..     |...- |.....|.+.++++++.+++|+++...+.+.+++
T Consensus        16 ~~V~~~~~~~~~~~~dp~~~a~~~~~~g~~~l~i~-----Dl~~~-~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~   89 (258)
T PRK01033         16 GLVKTVKFKDPRYIGDPINAVRIFNEKEVDELIVL-----DIDAS-KRGSEPNYELIENLASECFMPLCYGGGIKTLEQA   89 (258)
T ss_pred             cEEEeecccCceeCCCHHHHHHHHHHcCCCEEEEE-----ECCCC-cCCCcccHHHHHHHHHhCCCCEEECCCCCCHHHH
Confidence            344444433111 3455 88999999999998543     44222 1223567999999999999999999888877888


Q ss_pred             HHHHHcCCCeee-ecCCCChhHHHHHHHh-cCC-CCcEEeecCCHHHHHHHHHhCCCEEEEecCCC--CCchHHHHHHHH
Q 037779          108 QILEAIGVDYVD-ESEVLTPADEENHINK-HNF-RVPFVCGCRNLGESLRRIREGAAMIRTKGEAG--TGNIVEAVRHVR  182 (310)
Q Consensus       108 ~~~~~aGad~v~-~~~~~~~~~~~~~~~~-~~~-~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~--~~~~~~~~~~~~  182 (310)
                      +.+.++|++.+. .+..+..+++.+.+.+ .+. .+.+.++++.-       ..|.-.+.++|+..  .....+..+.+.
T Consensus        90 ~~l~~~G~~~vvigs~~~~~~~~~~~~~~~~~~~~i~vsiD~k~g-------~~~~~~v~~~gw~~~~~~~~~e~~~~~~  162 (258)
T PRK01033         90 KKIFSLGVEKVSINTAALEDPDLITEAAERFGSQSVVVSIDVKKN-------LGGKFDVYTHNGTKKLKKDPLELAKEYE  162 (258)
T ss_pred             HHHHHCCCCEEEEChHHhcCHHHHHHHHHHhCCCcEEEEEEEecC-------CCCcEEEEEcCCeecCCCCHHHHHHHHH
Confidence            888899999987 4444443444444433 221 14444443221       00000112222210  111223333333


Q ss_pred             HhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHH-HcCCCEEEEccccccCCC
Q 037779          183 SVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGD  260 (310)
Q Consensus       183 ~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~-~~GadgV~VGsai~~~~d  260 (310)
                      +.+.+...+..++.++.     ..+.++++++.+.+..++||  |++|||.+++|+.+++ +.|++||++|++|+..++
T Consensus       163 ~~g~~~ii~~~i~~~G~-----~~G~d~~~i~~~~~~~~ipv--IasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~~~  234 (258)
T PRK01033        163 ALGAGEILLNSIDRDGT-----MKGYDLELLKSFRNALKIPL--IALGGAGSLDDIVEAILNLGADAAAAGSLFVFKGV  234 (258)
T ss_pred             HcCCCEEEEEccCCCCC-----cCCCCHHHHHHHHhhCCCCE--EEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeCcc
Confidence            33333233333333332     13458999999998888999  7899999999999999 799999999999999844

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=99.57  E-value=4.5e-13  Score=122.09  Aligned_cols=187  Identities=19%  Similarity=0.204  Sum_probs=126.3

Q ss_pred             CCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-
Q 037779           42 VVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-  119 (310)
Q Consensus        42 ~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-  119 (310)
                      ..+| +.++.+.+.|+++++..     |... .+.....+.+.++++++.+++|+++...+.+.+.++.+...|++.+. 
T Consensus        29 ~~d~~~~a~~~~~~G~~~i~i~-----dl~~-~~~~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Vii  102 (253)
T PRK02083         29 AGDPVELAKRYNEEGADELVFL-----DITA-SSEGRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSI  102 (253)
T ss_pred             cCCHHHHHHHHHHcCCCEEEEE-----eCCc-ccccCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEE
Confidence            3454 89999999999998554     2211 11112456889999999999999999999888888888889999987 


Q ss_pred             ecCCCChhHHHHHHHh-cCCC-CcEEeecCC----------------------HHHHHHHHHhCCCEEEEecCCCCCchH
Q 037779          120 ESEVLTPADEENHINK-HNFR-VPFVCGCRN----------------------LGESLRRIREGAAMIRTKGEAGTGNIV  175 (310)
Q Consensus       120 ~~~~~~~~~~~~~~~~-~~~~-l~v~~~v~t----------------------~~ea~~a~~~Gad~I~v~g~~~~~~~~  175 (310)
                      .+..+..+++.+.+.+ .+.+ +.+.+++++                      .+.+..+.+.|++.+.++..       
T Consensus       103 gt~~l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i-------  175 (253)
T PRK02083        103 NSAAVANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSM-------  175 (253)
T ss_pred             ChhHhhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCC-------
Confidence            3333333344444444 2212 344444321                      12234445566666555421       


Q ss_pred             HHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccc
Q 037779          176 EAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSG  254 (310)
Q Consensus       176 ~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsa  254 (310)
                                         +.++.     ..+.++++++.+.+..++||  |++|||.+++|+.++++ .|+++|++|++
T Consensus       176 -------------------~~~g~-----~~g~d~~~i~~~~~~~~ipv--ia~GGv~s~~d~~~~~~~~G~~gvivg~a  229 (253)
T PRK02083        176 -------------------DRDGT-----KNGYDLELTRAVSDAVNVPV--IASGGAGNLEHFVEAFTEGGADAALAASI  229 (253)
T ss_pred             -------------------cCCCC-----CCCcCHHHHHHHHhhCCCCE--EEECCCCCHHHHHHHHHhCCccEEeEhHH
Confidence                               11111     12447888899988778999  77999999999999997 59999999999


Q ss_pred             cccCCCHHHHHHH
Q 037779          255 VFKSGDPVRRARA  267 (310)
Q Consensus       255 i~~~~dp~~~~~~  267 (310)
                      |+....+...+++
T Consensus       230 l~~~~~~~~~~~~  242 (253)
T PRK02083        230 FHFGEITIGELKA  242 (253)
T ss_pred             HHcCCCCHHHHHH
Confidence            9987765544433

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=99.57  E-value=7.1e-14  Score=124.49  Aligned_cols=152  Identities=26%  Similarity=0.387  Sum_probs=118.3

Q ss_pred             hHHHHHHHhcCCC-CcEEeecCCHHHHHHHHH-----hCCCEEEEe--cCCC--CCchHHHHHHHHHhhcc-eecccccC
Q 037779          127 ADEENHINKHNFR-VPFVCGCRNLGESLRRIR-----EGAAMIRTK--GEAG--TGNIVEAVRHVRSVMGD-IRVLRNMD  195 (310)
Q Consensus       127 ~~~~~~~~~~~~~-l~v~~~v~t~~ea~~a~~-----~Gad~I~v~--g~~~--~~~~~~~~~~~~~~~~~-~~~l~~~~  195 (310)
                      ..+.+.+...++. ++...+|+|.+|+.+..+     .|-++|++.  +..+  -+.+.+++++++++.++ |.++++..
T Consensus        52 ~~~~~~i~~~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~  131 (248)
T cd04728          52 ESFLDLLDKSGYTLLPNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCT  131 (248)
T ss_pred             chHHhhccccCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeC
Confidence            4455556544444 788889999999987664     366888864  4322  35678999999999776 88998888


Q ss_pred             chhHHhh-----------------hccCCC-cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          196 DDEVFTF-----------------AKNIAA-PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       196 ~d~~~~~-----------------~~~~~~-~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                      +|+....                 ..+.+. +.++++.+.+..++||  |++|||++++|+.+++++|||||+|||+|++
T Consensus       132 dd~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~~vpV--I~egGI~tpeda~~AmelGAdgVlV~SAIt~  209 (248)
T cd04728         132 DDPVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERADVPV--IVDAGIGTPSDAAQAMELGADAVLLNTAIAK  209 (248)
T ss_pred             CCHHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhCCCcE--EEeCCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence            7777431                 001111 4778888888777899  6799999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCChhh
Q 037779          258 SGDPVRRARAIVQAVTNYSDPDV  280 (310)
Q Consensus       258 ~~dp~~~~~~~~~~~~~~~~~~~  280 (310)
                      +.||..+++.|..++++.+....
T Consensus       210 a~dP~~ma~af~~Av~aGr~a~~  232 (248)
T cd04728         210 AKDPVAMARAFKLAVEAGRLAYL  232 (248)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999997665443

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>PRK07695 transcriptional regulator TenI; Provisional

Probab=99.56  E-value=3.2e-13  Score=118.95  Aligned_cols=179  Identities=15%  Similarity=0.212  Sum_probs=120.2

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc--CcceEeeccccchHHHHHHHHcCCCeeeec-C
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV--TIPVMAKARIGHFVEAQILEAIGVDYVDES-E  122 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~--~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~  122 (310)
                      +.++ ..++|+++| ++|       .+..+. ......++++.+..  ..+++++++      ++.+...|+|++|.. .
T Consensus        19 ~~~~-~~~~g~~~i-qlR-------~k~~~~-~~~~~~~~~l~~~~~~~~~liin~~------~~la~~~~~~gvHl~~~   82 (201)
T PRK07695         19 AVAM-QIHSEVDYI-HIR-------EREKSA-KELYEGVESLLKKGVPASKLIINDR------VDIALLLNIHRVQLGYR   82 (201)
T ss_pred             HHHH-HHhCCCCEE-EEc-------CCCCCH-HHHHHHHHHHHHhCCCCCeEEEECH------HHHHHHcCCCEEEeCcc
Confidence            3444 678899998 553       221110 00023344444331  234666644      457788999999843 2


Q ss_pred             CCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhh
Q 037779          123 VLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTF  202 (310)
Q Consensus       123 ~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~  202 (310)
                      .....++    ++..++..+.++++|.+++.++.+.|+||+.. |+.+...                     ...+    
T Consensus        83 ~~~~~~~----r~~~~~~~ig~s~~s~e~a~~a~~~Gadyi~~-g~v~~t~---------------------~k~~----  132 (201)
T PRK07695         83 SFSVRSV----REKFPYLHVGYSVHSLEEAIQAEKNGADYVVY-GHVFPTD---------------------CKKG----  132 (201)
T ss_pred             cCCHHHH----HHhCCCCEEEEeCCCHHHHHHHHHcCCCEEEE-CCCCCCC---------------------CCCC----
Confidence            2233333    22224678899999999999999999999975 3332211                     1000    


Q ss_pred             hccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcC
Q 037779          203 AKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY  275 (310)
Q Consensus       203 ~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~  275 (310)
                        .....++.++.+.+..++||  ++.||| +++++.++++.|+++|.+||+|+.++||.+.++.+.+.+++|
T Consensus       133 --~~~~g~~~l~~~~~~~~ipv--ia~GGI-~~~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~~~~~~~~~  200 (201)
T PRK07695        133 --VPARGLEELSDIARALSIPV--IAIGGI-TPENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIKKW  200 (201)
T ss_pred             --CCCCCHHHHHHHHHhCCCCE--EEEcCC-CHHHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHHHHHHHhhc
Confidence              01124667777776667999  567999 799999999999999999999999999999999999988776

>CHL00162 thiG thiamin biosynthesis protein G; Validated

Probab=99.56  E-value=1.1e-13  Score=123.15  Aligned_cols=155  Identities=17%  Similarity=0.306  Sum_probs=121.2

Q ss_pred             hHHHHHHHhcCCC-CcEEeecCCHHHHHHHHH----h-------CCCEEEEe--cCC--CCCchHHHHHHHHHhhcc-ee
Q 037779          127 ADEENHINKHNFR-VPFVCGCRNLGESLRRIR----E-------GAAMIRTK--GEA--GTGNIVEAVRHVRSVMGD-IR  189 (310)
Q Consensus       127 ~~~~~~~~~~~~~-l~v~~~v~t~~ea~~a~~----~-------Gad~I~v~--g~~--~~~~~~~~~~~~~~~~~~-~~  189 (310)
                      ..+.+.+...+.. ++...+|+|.+|+.+..+    +       +-++|++.  +..  .-++..+++++++++.++ |.
T Consensus        60 ~~~l~~i~~~~~~~LPNTaGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~  139 (267)
T CHL00162         60 SNLLNGLDWNKLWLLPNTAGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFT  139 (267)
T ss_pred             chHHHhhchhccEECCcCcCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCE
Confidence            4555666544444 788889999999987653    3       35788754  432  335778999999999997 99


Q ss_pred             cccccCchhHHhh-------------------hccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEE
Q 037779          190 VLRNMDDDEVFTF-------------------AKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVF  250 (310)
Q Consensus       190 ~l~~~~~d~~~~~-------------------~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~  250 (310)
                      +++|+++|+++..                   .+++. +...++.+.+..++||  +..+||++++|+.+++++|+|||+
T Consensus       140 VlPY~~~D~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~-n~~~l~~i~e~~~vpV--ivdAGIgt~sDa~~AmElGaDgVL  216 (267)
T CHL00162        140 VLPYINADPMLAKHLEDIGCATVMPLGSPIGSGQGLQ-NLLNLQIIIENAKIPV--IIDAGIGTPSEASQAMELGASGVL  216 (267)
T ss_pred             EeecCCCCHHHHHHHHHcCCeEEeeccCcccCCCCCC-CHHHHHHHHHcCCCcE--EEeCCcCCHHHHHHHHHcCCCEEe
Confidence            9999999999652                   12222 4556677777778999  568999999999999999999999


Q ss_pred             EccccccCCCHHHHHHHHHHHHHcCCChhhHHhh
Q 037779          251 VGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEV  284 (310)
Q Consensus       251 VGsai~~~~dp~~~~~~~~~~~~~~~~~~~~~~~  284 (310)
                      +.|+|.+++||.++++.|+.++++.+.......+
T Consensus       217 ~nSaIakA~dP~~mA~a~~~AV~AGR~A~~AG~~  250 (267)
T CHL00162        217 LNTAVAQAKNPEQMAKAMKLAVQAGRLAYLAGRM  250 (267)
T ss_pred             ecceeecCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999987765444333

>TIGR00693 thiE thiamine-phosphate pyrophosphorylase

Probab=99.55  E-value=2.6e-13  Score=118.75  Aligned_cols=179  Identities=21%  Similarity=0.268  Sum_probs=118.8

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-CC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-EV  123 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~~  123 (310)
                      .+.++.+.++|++++ +++-...+...+     ......+..+++..+.|+++++.      ++.+.+.|+++|+.. ..
T Consensus        16 ~~~~~~~~~~g~~~v-~lR~~~~~~~~~-----~~~~~~l~~~~~~~~~~l~i~~~------~~la~~~g~~GvHl~~~~   83 (196)
T TIGR00693        16 LNRVEAALKGGVTLV-QLRDKGSNTRER-----LALAEKLQELCRRYGVPFIVNDR------VDLALALGADGVHLGQDD   83 (196)
T ss_pred             HHHHHHHHhcCCCEE-EEecCCCCHHHH-----HHHHHHHHHHHHHhCCeEEEECH------HHHHHHcCCCEEecCccc
Confidence            367888889999988 553100011110     01123344555556899988754      456788999999853 22


Q ss_pred             CChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779          124 LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA  203 (310)
Q Consensus       124 ~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  203 (310)
                      +........   .+.+..+.+++||.+|+.++.+.|+||+.+. +.+..                     .++..     
T Consensus        84 ~~~~~~r~~---~~~~~~ig~s~h~~~e~~~a~~~g~dyi~~~-~v~~t---------------------~~k~~-----  133 (196)
T TIGR00693        84 LPASEARAL---LGPDKIIGVSTHNLEELAEAEAEGADYIGFG-PIFPT---------------------PTKKD-----  133 (196)
T ss_pred             CCHHHHHHh---cCCCCEEEEeCCCHHHHHHHhHcCCCEEEEC-CccCC---------------------CCCCC-----
Confidence            333232222   2345789999999999999999999999874 33321                     11000     


Q ss_pred             ccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 037779          204 KNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAI  268 (310)
Q Consensus       204 ~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~  268 (310)
                      .......+.++.+.+. .++||  ++.||| +++++.+++++|+++|.+||+|++++||.+.++++
T Consensus       134 ~~~~~g~~~l~~~~~~~~~~pv--~a~GGI-~~~~~~~~~~~G~~gva~~~~i~~~~dp~~~~~~l  196 (196)
T TIGR00693       134 PAPPAGVELLREIAATSIDIPI--VAIGGI-TLENAAEVLAAGADGVAVVSAIMQAADPKAAAKQL  196 (196)
T ss_pred             CCCCCCHHHHHHHHHhcCCCCE--EEECCc-CHHHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHhC
Confidence            0011246667777654 35898  567999 69999999999999999999999999999887753

This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=99.54  E-value=7.2e-13  Score=124.01  Aligned_cols=179  Identities=20%  Similarity=0.239  Sum_probs=133.7

Q ss_pred             CccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc--c-hHHHHHHHHc
Q 037779           37 GVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG--H-FVEAQILEAI  113 (310)
Q Consensus        37 g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~--~-~~~~~~~~~a  113 (310)
                      +.|....+++++.+..++|.-++.-....+.+  .        ..+.|+++++.++.|+-++.+..  . .+.++.+.+.
T Consensus        17 apM~~~s~~~la~avs~aGglG~l~~~~~~~~--~--------l~~~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~   86 (307)
T TIGR03151        17 GGMAWVATGSLAAAVSNAGGLGIIGAGNAPPD--V--------VRKEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEE   86 (307)
T ss_pred             CCCCCCCCHHHHHHHHhCCCcceeccccCCHH--H--------HHHHHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhC
Confidence            55556778999999999999876221100000  0        12457788887888988876542  2 2345678889


Q ss_pred             CCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccc
Q 037779          114 GVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRN  193 (310)
Q Consensus       114 Gad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~  193 (310)
                      |++.|..+.. .|.++++.++.+  ++.+++.+.+.++++++.+.|+|+|.++|...+++.                   
T Consensus        87 ~v~~v~~~~g-~p~~~i~~lk~~--g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~-------------------  144 (307)
T TIGR03151        87 KVPVVTTGAG-NPGKYIPRLKEN--GVKVIPVVASVALAKRMEKAGADAVIAEGMESGGHI-------------------  144 (307)
T ss_pred             CCCEEEEcCC-CcHHHHHHHHHc--CCEEEEEcCCHHHHHHHHHcCCCEEEEECcccCCCC-------------------
Confidence            9999875433 455677888764  688889999999999999999999999877444431                   


Q ss_pred             cCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779          194 MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD  260 (310)
Q Consensus       194 ~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d  260 (310)
                                 ....++.+++++.+..++||  |++|||.+++++.+++.+||+||++||.|..+..
T Consensus       145 -----------g~~~~~~ll~~v~~~~~iPv--iaaGGI~~~~~~~~al~~GA~gV~iGt~f~~t~E  198 (307)
T TIGR03151       145 -----------GELTTMALVPQVVDAVSIPV--IAAGGIADGRGMAAAFALGAEAVQMGTRFLCAKE  198 (307)
T ss_pred             -----------CCCcHHHHHHHHHHHhCCCE--EEECCCCCHHHHHHHHHcCCCEeecchHHhcccc
Confidence                       11235788888888778999  6799999999999999999999999999998653

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>PLN02334 ribulose-phosphate 3-epimerase

Probab=99.52  E-value=1.5e-12  Score=116.95  Aligned_cols=188  Identities=16%  Similarity=0.172  Sum_probs=123.2

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCC---CCCChHHHHHHHhhcCcceEeeccccc-hHHHHHHHHcCCCee--e
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVA---RMSDPQLIKQIKSSVTIPVMAKARIGH-FVEAQILEAIGVDYV--D  119 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~---~~~~~~~i~~i~~~~~lPv~~kd~i~~-~~~~~~~~~aGad~v--~  119 (310)
                      +.++.+.++|++++| ++       ...|+.   ..-.++.++++++.++.|+-+...+.+ .+.++.+.++|||+|  |
T Consensus        24 ~~l~~~~~~g~~~ih-ld-------~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v~vH   95 (229)
T PLN02334         24 EEAKRVLDAGADWLH-VD-------VMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTFH   95 (229)
T ss_pred             HHHHHHHHcCCCEEE-Ee-------cccCCcCCccccCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEEEEe
Confidence            678999999999994 42       111211   111247889999888877766666632 245678889999999  4


Q ss_pred             ec--CCCChhHHHHHHHhcCCCCcEEeecC--CHHHHHHHHHhC--CCEEEEecCCCCCchHHHHHHHHHhhcceecccc
Q 037779          120 ES--EVLTPADEENHINKHNFRVPFVCGCR--NLGESLRRIREG--AAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRN  193 (310)
Q Consensus       120 ~~--~~~~~~~~~~~~~~~~~~l~v~~~v~--t~~ea~~a~~~G--ad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~  193 (310)
                      ..  ..-.+....+.++.  .++.+++.++  |+.+..+....+  +|++.+. +.+.+.                    
T Consensus        96 ~~q~~~d~~~~~~~~i~~--~g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~-~v~pg~--------------------  152 (229)
T PLN02334         96 IEQASTIHLHRLIQQIKS--AGMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVM-SVEPGF--------------------  152 (229)
T ss_pred             eccccchhHHHHHHHHHH--CCCeEEEEECCCCCHHHHHHHHhccCCCEEEEE-EEecCC--------------------
Confidence            22  11234455555544  4566666665  666655555444  9999764 211111                    


Q ss_pred             cCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779          194 MDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV  272 (310)
Q Consensus       194 ~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~  272 (310)
                       +..      .-.....+.++.+++. .++|++  +.||| +++++.++.++|+|++++||+|++++||.+.+++|++.+
T Consensus       153 -~~~------~~~~~~~~~i~~~~~~~~~~~I~--a~GGI-~~e~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l~~~~  222 (229)
T PLN02334        153 -GGQ------SFIPSMMDKVRALRKKYPELDIE--VDGGV-GPSTIDKAAEAGANVIVAGSAVFGAPDYAEVISGLRASV  222 (229)
T ss_pred             -Ccc------ccCHHHHHHHHHHHHhCCCCcEE--EeCCC-CHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHH
Confidence             000      0001124455556554 357884  46999 699999999999999999999999999999999998876


Q ss_pred             Hc
Q 037779          273 TN  274 (310)
Q Consensus       273 ~~  274 (310)
                      ++
T Consensus       223 ~~  224 (229)
T PLN02334        223 EK  224 (229)
T ss_pred             HH
Confidence            64

>PRK08883 ribulose-phosphate 3-epimerase; Provisional

Probab=99.51  E-value=2.1e-12  Score=115.27  Aligned_cols=187  Identities=17%  Similarity=0.175  Sum_probs=132.8

Q ss_pred             HHHHHHHHcCCcEEE----ecccccchhhhcCCCCCCCChHHHHHHHhh-cCcceEeeccccchH-HHHHHHHcCCCeee
Q 037779           46 EQARIAEEAGACAVM----ALERVPADIRAQGGVARMSDPQLIKQIKSS-VTIPVMAKARIGHFV-EAQILEAIGVDYVD  119 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~----~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~-~~lPv~~kd~i~~~~-~~~~~~~aGad~v~  119 (310)
                      +.++.+.++|+++++    +.+++|. . .|+       +..++.+|+. +++|+-++-.+.+.+ .++.+.++|||.+.
T Consensus        16 ~~i~~l~~~g~~~lH~DvmDG~Fvpn-~-tfg-------~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~   86 (220)
T PRK08883         16 EDVEKVLAAGADVVHFDVMDNHYVPN-L-TFG-------APICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMIT   86 (220)
T ss_pred             HHHHHHHHcCCCEEEEecccCcccCc-c-ccC-------HHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEE
Confidence            678999999999973    2335553 2 344       8899999988 699998888886543 45788889999987


Q ss_pred             ec-C-CCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEe--cCCCCCchHHHHHHHHHhhcceecccccC
Q 037779          120 ES-E-VLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTK--GEAGTGNIVEAVRHVRSVMGDIRVLRNMD  195 (310)
Q Consensus       120 ~~-~-~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~--g~~~~~~~~~~~~~~~~~~~~~~~l~~~~  195 (310)
                      .+ + ...+.+.++.+++.+....+.+...|+-+.....-.-.|.|.+.  .+++++-                  +.  
T Consensus        87 ~H~Ea~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq------------------~f--  146 (220)
T PRK08883         87 FHVEASEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQ------------------SF--  146 (220)
T ss_pred             EcccCcccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCc------------------ee--
Confidence            54 2 23456777888887766777777778777666555567766443  2333331                  00  


Q ss_pred             chhHHhhhccCCCcHHHHHHHHhc-----CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 037779          196 DDEVFTFAKNIAAPYDLVMQTKQL-----GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ  270 (310)
Q Consensus       196 ~d~~~~~~~~~~~~~~l~~~i~~~-----~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~  270 (310)
                                +....+.++++++.     .++|+.  +.|||+ ++++.++.++|||++++||+|++++|+.+.++++++
T Consensus       147 ----------i~~~lekI~~l~~~~~~~~~~~~I~--vdGGI~-~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~  213 (220)
T PRK08883        147 ----------IPHTLDKLRAVRKMIDESGRDIRLE--IDGGVK-VDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRA  213 (220)
T ss_pred             ----------cHhHHHHHHHHHHHHHhcCCCeeEE--EECCCC-HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHH
Confidence                      01123334444332     146774  469995 999999999999999999999999999999999988


Q ss_pred             HHHc
Q 037779          271 AVTN  274 (310)
Q Consensus       271 ~~~~  274 (310)
                      .+++
T Consensus       214 ~~~~  217 (220)
T PRK08883        214 ELAK  217 (220)
T ss_pred             HHHh
Confidence            7754

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=99.51  E-value=2.6e-12  Score=117.26  Aligned_cols=204  Identities=18%  Similarity=0.198  Sum_probs=128.6

Q ss_pred             CCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-e
Q 037779           43 VTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-E  120 (310)
Q Consensus        43 ~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~  120 (310)
                      .+| ++|+.|.+.|+++++..+     ...- +.....+.+.++++++.+++||++...+.+.+.++.+..+||+.+. .
T Consensus        30 ~dp~~~a~~~~~~G~~~l~v~D-----l~~~-~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivg  103 (254)
T TIGR00735        30 GDPVELAQRYDEEGADELVFLD-----ITAS-SEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSIN  103 (254)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEc-----CCcc-cccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence            355 899999999999986542     2111 1122356888999999999999999999888889999999999987 4


Q ss_pred             cCCCChhHHHHHHHhcCC--CCcEEeecCCHHHHHHHHHhCCCEEEEecCCC-C-CchHHHHHHHHHhhcceecccccCc
Q 037779          121 SEVLTPADEENHINKHNF--RVPFVCGCRNLGESLRRIREGAAMIRTKGEAG-T-GNIVEAVRHVRSVMGDIRVLRNMDD  196 (310)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~--~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~-~-~~~~~~~~~~~~~~~~~~~l~~~~~  196 (310)
                      +..+..+++.+.+.+...  .+.+.++++..+..    ..+.--+.+.++.. + ....+..+...+.+.+...+..++.
T Consensus       104 t~~~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~----~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~  179 (254)
T TIGR00735       104 TAAVKNPELIYELADRFGSQCIVVAIDAKRVYVN----SYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDK  179 (254)
T ss_pred             hhHhhChHHHHHHHHHcCCCCEEEEEEeccCCCC----CCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCc
Confidence            444444455555544322  24444454321000    00000123333211 1 1122333333333334333333333


Q ss_pred             hhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHH
Q 037779          197 DEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVR  263 (310)
Q Consensus       197 d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~  263 (310)
                      ++.     ..+.++++++.+++..++||  |++|||.+++++.++++.| +++|++|++|+.......
T Consensus       180 ~g~-----~~g~~~~~~~~i~~~~~ipv--ia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~  240 (254)
T TIGR00735       180 DGT-----KSGYDLELTKAVSEAVKIPV--IASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIG  240 (254)
T ss_pred             ccC-----CCCCCHHHHHHHHHhCCCCE--EEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHH
Confidence            322     23457889999988888999  6799999999999999987 999999999998765443

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=99.50  E-value=1.3e-12  Score=130.09  Aligned_cols=221  Identities=16%  Similarity=0.186  Sum_probs=151.6

Q ss_pred             ccccCCCH-HHHHHHHHcCCcEEEecccccchhhhc-CCC-CCCCChHHHHHHHhhcCcceEeeccccch----------
Q 037779           38 VIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQ-GGV-ARMSDPQLIKQIKSSVTIPVMAKARIGHF----------  104 (310)
Q Consensus        38 ~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~-~G~-~~~~~~~~i~~i~~~~~lPv~~kd~i~~~----------  104 (310)
                      .+++..|| ++|+.|.+.||++++.+     |+..+ .|. .+..+.+.++++.+.+.+|+.+...+.+.          
T Consensus       262 ~~~~~gdPve~a~~y~~~Gadel~~~-----Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~  336 (538)
T PLN02617        262 EVRNLGKPVELAGQYYKDGADEVAFL-----NITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSS  336 (538)
T ss_pred             CCCcCCCHHHHHHHHHHcCCCEEEEE-----ECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccch
Confidence            45667776 89999999999999766     44432 111 12334788999999999999999888754          


Q ss_pred             -HHHHHHHHcCCCeee-ecCC-CCh-----------hHHHHHHHhcCCCCcEEe--ecCCHH--H-------HHHHHH--
Q 037779          105 -VEAQILEAIGVDYVD-ESEV-LTP-----------ADEENHINKHNFRVPFVC--GCRNLG--E-------SLRRIR--  157 (310)
Q Consensus       105 -~~~~~~~~aGad~v~-~~~~-~~~-----------~~~~~~~~~~~~~l~v~~--~v~t~~--e-------a~~a~~--  157 (310)
                       +.++.++.+|||.|. .+.. ..|           +++++.+.+......+++  +++...  +       ..++..  
T Consensus       337 ~e~~~~~l~~GadkV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~  416 (538)
T PLN02617        337 LEVASEYFRSGADKISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPG  416 (538)
T ss_pred             HHHHHHHHHcCCCEEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccccccccC
Confidence             568999999999998 3322 222           466666665332344444  443210  0       000000  


Q ss_pred             -hCC----CEEEEecCCC-CC-chHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccC
Q 037779          158 -EGA----AMIRTKGEAG-TG-NIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAG  230 (310)
Q Consensus       158 -~Ga----d~I~v~g~~~-~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~G  230 (310)
                       .|-    =.+.++|+.. ++ ...+..+.+.+++.....++.+++|++     ..+.+.++++.+.+..++||  ||+|
T Consensus       417 ~~~~~~~~~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~id~DGt-----~~G~d~~l~~~v~~~~~ipv--iasG  489 (538)
T PLN02617        417 PNGEEYAWYQCTVKGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQ-----GKGFDIELVKLVSDAVTIPV--IASS  489 (538)
T ss_pred             cCcccceEEEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEeecccccc-----ccCcCHHHHHHHHhhCCCCE--EEEC
Confidence             010    0155555532 22 334555666667777888888888876     35778999999998889999  7899


Q ss_pred             CCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHHHHHHH
Q 037779          231 GVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVRRARAIVQ  270 (310)
Q Consensus       231 GI~t~~di~~~~~-~GadgV~VGsai~~~~dp~~~~~~~~~  270 (310)
                      |+++++|+.++++ .|+++++.+|.|...+.+...++++..
T Consensus       490 G~g~~~d~~~~~~~~~~~a~~aa~~fh~~~~~~~~~k~~l~  530 (538)
T PLN02617        490 GAGTPEHFSDVFSKTNASAALAAGIFHRKEVPISSVKEHLL  530 (538)
T ss_pred             CCCCHHHHHHHHhcCCccEEEEEeeeccCCCCHHHHHHHHH
Confidence            9999999999997 689999999999998877666655543

>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase

Probab=99.50  E-value=9e-13  Score=131.31  Aligned_cols=183  Identities=22%  Similarity=0.283  Sum_probs=127.7

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-CCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-EVL  124 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~~~  124 (310)
                      +.++.+.++|+.+| +||....+.+.+     ......+.++++..+++++++++      ++.+.+.|+|+||.. ..+
T Consensus       311 ~~l~~~l~~Gv~~v-qlR~k~~~~~~~-----~~~a~~l~~~~~~~~~~liind~------~~lA~~~~adGvHl~~~d~  378 (502)
T PLN02898        311 DAVRAAIEGGATIV-QLREKEAETREF-----IEEAKACLAICRSYGVPLLINDR------VDVALACDADGVHLGQSDM  378 (502)
T ss_pred             HHHHHHHHcCCCEE-EEccCCCCHHHH-----HHHHHHHHHHHHHhCCEEEEcCh------HHHHHhcCCCEEEeChHhc
Confidence            57889999999998 563111111111     11123344455556789888865      346778999999943 333


Q ss_pred             ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779          125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK  204 (310)
Q Consensus       125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  204 (310)
                      +..+..+.   .+.+..+.+++||.+|+.++.+.|+||+.+. +.+...                     ++..      
T Consensus       379 ~~~~~r~~---~~~~~~iG~S~h~~~e~~~a~~~gadyi~~g-pif~t~---------------------tk~~------  427 (502)
T PLN02898        379 PVRLARSL---LGPGKIIGVSCKTPEQAEQAWKDGADYIGCG-GVFPTN---------------------TKAN------  427 (502)
T ss_pred             CHHHHHHh---cCCCCEEEEeCCCHHHHHHHhhcCCCEEEEC-CeecCC---------------------CCCC------
Confidence            33333221   3456789999999999999999999999974 433221                     1100      


Q ss_pred             cCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCC---EEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          205 NIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCD---GVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       205 ~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~Gad---gV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      .....++.++++.+..++||++  -||| +++++.+++++|++   +|.++|+|++++||.+.++.+.+.+..
T Consensus       428 ~~~~g~~~~~~~~~~~~~Pv~a--iGGI-~~~~~~~~~~~G~~~~~gvav~~~i~~~~d~~~~~~~~~~~~~~  497 (502)
T PLN02898        428 NKTIGLDGLREVCEASKLPVVA--IGGI-SASNAASVMESGAPNLKGVAVVSALFDQEDVLKATRKLHAILTE  497 (502)
T ss_pred             CCCCCHHHHHHHHHcCCCCEEE--ECCC-CHHHHHHHHHcCCCcCceEEEEeHHhcCCCHHHHHHHHHHHHHH
Confidence            0122467777777767899955  5999 59999999999999   999999999999999999999988764

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=99.49  E-value=4.8e-12  Score=113.77  Aligned_cols=175  Identities=22%  Similarity=0.257  Sum_probs=120.3

Q ss_pred             CCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-e
Q 037779           43 VTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-E  120 (310)
Q Consensus        43 ~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~  120 (310)
                      .+| ++++.|.+.|++.++..     |... .|.....+.+.++++++.+++|+++...+...+.++.+.+.|++.+. .
T Consensus        30 ~dp~~~a~~~~~~g~~~i~i~-----dl~~-~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg  103 (232)
T TIGR03572        30 GDPVNAARIYNAKGADELIVL-----DIDA-SKRGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSIN  103 (232)
T ss_pred             CCHHHHHHHHHHcCCCEEEEE-----eCCC-cccCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence            354 89999999999998543     3321 22222456889999999999999999888877788888889999987 4


Q ss_pred             cCCCChhHHHHHHHh-cCCC-CcEEeecCC----------------------HHHHHHHHHhCCCEEEEecCCCCCchHH
Q 037779          121 SEVLTPADEENHINK-HNFR-VPFVCGCRN----------------------LGESLRRIREGAAMIRTKGEAGTGNIVE  176 (310)
Q Consensus       121 ~~~~~~~~~~~~~~~-~~~~-l~v~~~v~t----------------------~~ea~~a~~~Gad~I~v~g~~~~~~~~~  176 (310)
                      +..+..+++.+.+.+ .+.. +.+.++++.                      .+.++.+.+.|++.+.+++.        
T Consensus       104 ~~~l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i--------  175 (232)
T TIGR03572       104 TAALENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSI--------  175 (232)
T ss_pred             hhHhcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCC--------
Confidence            444444455555544 2222 333334322                      22334445566666666532        


Q ss_pred             HHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHH-HHHcCCCEEEEcccc
Q 037779          177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM-MMQLGCDGVFVGSGV  255 (310)
Q Consensus       177 ~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~-~~~~GadgV~VGsai  255 (310)
                                        +.++.     ..+.++++++.+++..++||  +++|||++++++.+ +.+.|+++|++||+|
T Consensus       176 ------------------~~~g~-----~~g~~~~~~~~i~~~~~ipv--ia~GGi~s~~di~~~l~~~gadgV~vg~a~  230 (232)
T TIGR03572       176 ------------------DRDGT-----MKGYDLELIKTVSDAVSIPV--IALGGAGSLDDLVEVALEAGASAVAAASLF  230 (232)
T ss_pred             ------------------CccCC-----cCCCCHHHHHHHHhhCCCCE--EEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence                              11111     12446889999988778999  67999999999999 667999999999998


Q ss_pred             c
Q 037779          256 F  256 (310)
Q Consensus       256 ~  256 (310)
                      .
T Consensus       231 h  231 (232)
T TIGR03572       231 H  231 (232)
T ss_pred             h
Confidence            5

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=99.49  E-value=5.2e-12  Score=110.11  Aligned_cols=158  Identities=16%  Similarity=0.232  Sum_probs=107.5

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeecCCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLT  125 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~~~  125 (310)
                      +.++.+.++|++++ ++       |.+.-    ...+.++.+++....-......+-..++++.+.++|||+++.+.. .
T Consensus        28 ~~~~~~~~~Gv~~v-ql-------r~k~~----~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~~-~   94 (187)
T PRK07455         28 QMAEAVAAGGMRLI-EI-------TWNSD----QPAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTPHV-D   94 (187)
T ss_pred             HHHHHHHHCCCCEE-EE-------eCCCC----CHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECCCC-C
Confidence            67999999999998 44       32221    114556666655432211111122237889999999999985433 2


Q ss_pred             hhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhcc
Q 037779          126 PADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN  205 (310)
Q Consensus       126 ~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  205 (310)
                       .+..+.....  ++..+.+++|+.|+.++.+.|+||++++.   +..                                
T Consensus        95 -~~~~~~~~~~--~~~~i~G~~t~~e~~~A~~~Gadyv~~Fp---t~~--------------------------------  136 (187)
T PRK07455         95 -PELIEAAVAQ--DIPIIPGALTPTEIVTAWQAGASCVKVFP---VQA--------------------------------  136 (187)
T ss_pred             -HHHHHHHHHc--CCCEEcCcCCHHHHHHHHHCCCCEEEECc---CCc--------------------------------
Confidence             3334444333  34566679999999999999999999851   110                                


Q ss_pred             CCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          206 IAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       206 ~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                       ....+.++.++... ++|+++  -||| |++++..++++|+++|.+||+|+..
T Consensus       137 -~~G~~~l~~~~~~~~~ipvva--iGGI-~~~n~~~~l~aGa~~vav~s~i~~~  186 (187)
T PRK07455        137 -VGGADYIKSLQGPLGHIPLIP--TGGV-TLENAQAFIQAGAIAVGLSGQLFPK  186 (187)
T ss_pred             -ccCHHHHHHHHhhCCCCcEEE--eCCC-CHHHHHHHHHCCCeEEEEehhcccC
Confidence             11245566666654 589954  5999 6999999999999999999999874

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=99.49  E-value=3.6e-12  Score=114.48  Aligned_cols=204  Identities=17%  Similarity=0.209  Sum_probs=139.0

Q ss_pred             ccceeeecCCccccC---CCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccc
Q 037779           28 VGLAQMLRGGVIMDV---VTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGH  103 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~---~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~  103 (310)
                      .+.++++.+|+....   .+| ++++.|.+. +++++..   +.|. ...|.  ..|.+.++++++.+++|+++...+.+
T Consensus        12 ~G~vVr~~~G~~~~~~~~~dp~~~a~~~~~~-~~~l~iv---Dldg-a~~g~--~~n~~~i~~i~~~~~~pv~~gGGIrs   84 (228)
T PRK04128         12 NGKAVRLYKGRKEEVKVYGDPVEIALRFSEY-VDKIHVV---DLDG-AFEGK--PKNLDVVKNIIRETGLKVQVGGGLRT   84 (228)
T ss_pred             CCEEEEEEeccccCceECCCHHHHHHHHHHh-CCEEEEE---ECcc-hhcCC--cchHHHHHHHHhhCCCCEEEcCCCCC
Confidence            445566666665432   255 789999998 9988554   2222 22222  35688999999999999999999988


Q ss_pred             hHHHHHHHHcCCCeee-ecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCC--CCCchHHHHHH
Q 037779          104 FVEAQILEAIGVDYVD-ESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEA--GTGNIVEAVRH  180 (310)
Q Consensus       104 ~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~--~~~~~~~~~~~  180 (310)
                      .++++.+.++|++.++ .+...+| ++.+.+.+...++.+.++++.          |  -+.+.|+.  ......+.+++
T Consensus        85 ~edv~~l~~~G~~~vivGtaa~~~-~~l~~~~~~~g~ivvslD~~~----------g--~v~~~gw~~~~~~~~~~~~~~  151 (228)
T PRK04128         85 YESIKDAYEIGVENVIIGTKAFDL-EFLEKVTSEFEGITVSLDVKG----------G--RIAVKGWLEESSIKVEDAYEM  151 (228)
T ss_pred             HHHHHHHHHCCCCEEEECchhcCH-HHHHHHHHHcCCEEEEEEccC----------C--eEecCCCeEcCCCCHHHHHHH
Confidence            8899999999999977 5555544 455555443333444445432          2  33444442  12244577788


Q ss_pred             HHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779          181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD  260 (310)
Q Consensus       181 ~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d  260 (310)
                      ..++ .....+..+++|++.     .+.+ ++.+.+   .++||  |++|||++++|+.++.+.|++|+++|++|+...-
T Consensus       152 ~~~~-~~~ii~t~i~~dGt~-----~G~d-~l~~~~---~~~pv--iasGGv~~~~Dl~~l~~~g~~gvivg~al~~g~~  219 (228)
T PRK04128        152 LKNY-VNRFIYTSIERDGTL-----TGIE-EIERFW---GDEEF--IYAGGVSSAEDVKKLAEIGFSGVIIGKALYEGRI  219 (228)
T ss_pred             HHHH-hCEEEEEeccchhcc-----cCHH-HHHHhc---CCCCE--EEECCCCCHHHHHHHHHCCCCEEEEEhhhhcCCc
Confidence            8777 555566777777763     2323 443332   46899  7899999999999999999999999999999875


Q ss_pred             HHH
Q 037779          261 PVR  263 (310)
Q Consensus       261 p~~  263 (310)
                      +..
T Consensus       220 ~~~  222 (228)
T PRK04128        220 SLE  222 (228)
T ss_pred             CHH
Confidence            543

>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]

Probab=99.48  E-value=1.3e-12  Score=114.57  Aligned_cols=153  Identities=24%  Similarity=0.353  Sum_probs=120.1

Q ss_pred             hHHHHHHHhcCCC-CcEEeecCCHHHHHHHHH-----hCCCEEEEe--cCC--CCCchHHHHHHHHHhhcc-eecccccC
Q 037779          127 ADEENHINKHNFR-VPFVCGCRNLGESLRRIR-----EGAAMIRTK--GEA--GTGNIVEAVRHVRSVMGD-IRVLRNMD  195 (310)
Q Consensus       127 ~~~~~~~~~~~~~-l~v~~~v~t~~ea~~a~~-----~Gad~I~v~--g~~--~~~~~~~~~~~~~~~~~~-~~~l~~~~  195 (310)
                      +.+.+.+...++. ++..++|+|.+|+.+..+     .+-+.|++.  +..  .-++..+++++++.+.++ |.+++|++
T Consensus        59 ~~~l~~l~~~~~~~LPNTaGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~  138 (262)
T COG2022          59 DGILDLLIPLGVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTT  138 (262)
T ss_pred             chHHHHhhhcCcEeCCCccccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccC
Confidence            4555666665555 788899999999987764     356888764  332  235678999999999998 99999999


Q ss_pred             chhHHhh-------------------hccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc
Q 037779          196 DDEVFTF-------------------AKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF  256 (310)
Q Consensus       196 ~d~~~~~-------------------~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~  256 (310)
                      +|+++..                   +.++. +...++.+.+..++||  |+..||++|+|+.+++++|+|+|++.|+|.
T Consensus       139 dD~v~arrLee~GcaavMPl~aPIGSg~G~~-n~~~l~iiie~a~VPv--iVDAGiG~pSdAa~aMElG~DaVL~NTAiA  215 (262)
T COG2022         139 DDPVLARRLEEAGCAAVMPLGAPIGSGLGLQ-NPYNLEIIIEEADVPV--IVDAGIGTPSDAAQAMELGADAVLLNTAIA  215 (262)
T ss_pred             CCHHHHHHHHhcCceEeccccccccCCcCcC-CHHHHHHHHHhCCCCE--EEeCCCCChhHHHHHHhcccceeehhhHhh
Confidence            9999652                   11222 3445566666668999  568999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHcCCChhhHH
Q 037779          257 KSGDPVRRARAIVQAVTNYSDPDVLA  282 (310)
Q Consensus       257 ~~~dp~~~~~~~~~~~~~~~~~~~~~  282 (310)
                      ++.||..|+++|.-++++.+-.....
T Consensus       216 ~A~DPv~MA~Af~~Av~AGrlAylAG  241 (262)
T COG2022         216 RAKDPVAMARAFALAVEAGRLAYLAG  241 (262)
T ss_pred             ccCChHHHHHHHHHHHHHhHHHHHcC
Confidence            99999999999999999876544433

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=99.48  E-value=5.8e-12  Score=111.83  Aligned_cols=172  Identities=16%  Similarity=0.261  Sum_probs=123.5

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCc-c-eEeecc-ccchHHHHHHHHcCCCeeeecC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTI-P-VMAKAR-IGHFVEAQILEAIGVDYVDESE  122 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~l-P-v~~kd~-i~~~~~~~~~~~aGad~v~~~~  122 (310)
                      ..++.+.++|...+ -+       ....    ..-.+.++++++...- | +++.-. +.+.++++.+.++||+++..+.
T Consensus        29 ~~~~al~~~Gi~~i-Ei-------t~~~----~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~FivsP~   96 (213)
T PRK06552         29 KISLAVIKGGIKAI-EV-------TYTN----PFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIVSPS   96 (213)
T ss_pred             HHHHHHHHCCCCEE-EE-------ECCC----ccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEECCC
Confidence            67999999999987 22       1111    1116678888876532 2 333322 2355788999999999997543


Q ss_pred             CCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhh
Q 037779          123 VLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTF  202 (310)
Q Consensus       123 ~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~  202 (310)
                      .  .+++.+..++  .+++++.+++|+.|+..+.+.|+|+++++....                                
T Consensus        97 ~--~~~v~~~~~~--~~i~~iPG~~T~~E~~~A~~~Gad~vklFPa~~--------------------------------  140 (213)
T PRK06552         97 F--NRETAKICNL--YQIPYLPGCMTVTEIVTALEAGSEIVKLFPGST--------------------------------  140 (213)
T ss_pred             C--CHHHHHHHHH--cCCCEECCcCCHHHHHHHHHcCCCEEEECCccc--------------------------------
Confidence            2  4567776665  569999999999999999999999999862100                                


Q ss_pred             hccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC------CCHHHHHHHHHHHHH
Q 037779          203 AKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS------GDPVRRARAIVQAVT  273 (310)
Q Consensus       203 ~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~------~dp~~~~~~~~~~~~  273 (310)
                         .  ..+.++.++.. .++|+  ++.||| +++++.+++++|++++.+||.|+..      .++.+.++++.+.++
T Consensus       141 ---~--G~~~ik~l~~~~p~ip~--~atGGI-~~~N~~~~l~aGa~~vavgs~l~~~~~~~~~~~i~~~a~~~~~~~~  210 (213)
T PRK06552        141 ---L--GPSFIKAIKGPLPQVNV--MVTGGV-NLDNVKDWFAAGADAVGIGGELNKLASQGDFDLITEKAKKYMSSLR  210 (213)
T ss_pred             ---C--CHHHHHHHhhhCCCCEE--EEECCC-CHHHHHHHHHCCCcEEEEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence               1  13345555543 35888  467999 5999999999999999999999987      457777777777665

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI

Probab=99.48  E-value=5.7e-12  Score=109.21  Aligned_cols=178  Identities=23%  Similarity=0.287  Sum_probs=118.1

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHh---hcCcceEeeccccchHHHHHHHHcCCCeeeec
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS---SVTIPVMAKARIGHFVEAQILEAIGVDYVDES  121 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~---~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~  121 (310)
                      .+.++.+.++|++++ .++       ...++. ..+...++++++   ..++++++++      .++.+.++|+|+++..
T Consensus        15 ~~~l~~l~~~g~~~i-~lr-------~~~~~~-~~~~~~~~~i~~~~~~~~~~l~~~~------~~~~a~~~g~~~vh~~   79 (196)
T cd00564          15 LEVVEAALKGGVTLV-QLR-------EKDLSA-RELLELARALRELCRKYGVPLIIND------RVDLALAVGADGVHLG   79 (196)
T ss_pred             HHHHHHHHhcCCCEE-EEe-------CCCCCH-HHHHHHHHHHHHHHHHhCCeEEEeC------hHHHHHHcCCCEEecC
Confidence            467889999999998 442       111110 111234444443   3467777653      3557888999999844


Q ss_pred             CCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHh
Q 037779          122 EVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFT  201 (310)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~  201 (310)
                      .........+.+  ...+..+.++++|.+++.++.+.|+|++.+. +.+.+                     ....+   
T Consensus        80 ~~~~~~~~~~~~--~~~~~~~g~~~~t~~~~~~~~~~g~d~i~~~-~~~~~---------------------~~~~~---  132 (196)
T cd00564          80 QDDLPVAEARAL--LGPDLIIGVSTHSLEEALRAEELGADYVGFG-PVFPT---------------------PTKPG---  132 (196)
T ss_pred             cccCCHHHHHHH--cCCCCEEEeeCCCHHHHHHHhhcCCCEEEEC-CccCC---------------------CCCCC---
Confidence            321122222222  3346788899999999999999999999874 21111                     00000   


Q ss_pred             hhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 037779          202 FAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV  269 (310)
Q Consensus       202 ~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~  269 (310)
                        .......+.++.+++..++||  ++.||| +++++.+++++|+++|++||+|+.++||.+.++++.
T Consensus       133 --~~~~~~~~~~~~~~~~~~~pv--~a~GGi-~~~~i~~~~~~Ga~~i~~g~~i~~~~~~~~~~~~l~  195 (196)
T cd00564         133 --AGPPLGLELLREIAELVEIPV--VAIGGI-TPENAAEVLAAGADGVAVISAITGADDPAAAARELL  195 (196)
T ss_pred             --CCCCCCHHHHHHHHHhCCCCE--EEECCC-CHHHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHh
Confidence              001224667777776667899  567999 589999999999999999999999999988887764

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.

>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2

Probab=99.46  E-value=3.1e-12  Score=110.79  Aligned_cols=165  Identities=20%  Similarity=0.232  Sum_probs=108.0

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeee-cCC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE-SEV  123 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~-~~~  123 (310)
                      .+.++++.++|++.+ +||....+...+     ......+.++++..+.+++++++      ++.+.+.|+|+||. ...
T Consensus        15 ~~~l~~~~~~gv~~v-~lR~k~~~~~~~-----~~~a~~l~~~~~~~~~~liin~~------~~la~~~~~dGvHl~~~~   82 (180)
T PF02581_consen   15 LEQLEAALAAGVDLV-QLREKDLSDEEL-----LELARRLAELCQKYGVPLIINDR------VDLALELGADGVHLGQSD   82 (180)
T ss_dssp             HHHHHHHHHTT-SEE-EEE-SSS-HHHH-----HHHHHHHHHHHHHTTGCEEEES-------HHHHHHCT-SEEEEBTTS
T ss_pred             HHHHHHHHHCCCcEE-EEcCCCCCccHH-----HHHHHHHHHHhhcceEEEEecCC------HHHHHhcCCCEEEecccc
Confidence            477889999999998 564111111111     11133445555666899998875      34678899999994 344


Q ss_pred             CChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779          124 LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA  203 (310)
Q Consensus       124 ~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  203 (310)
                      +++.+..+.+   +.+..+.+++||.+|+..+.+.|+||+.+. +.+.+                     .++..     
T Consensus        83 ~~~~~~r~~~---~~~~~ig~S~h~~~e~~~a~~~g~dYv~~g-pvf~T---------------------~sk~~-----  132 (180)
T PF02581_consen   83 LPPAEARKLL---GPDKIIGASCHSLEEAREAEELGADYVFLG-PVFPT---------------------SSKPG-----  132 (180)
T ss_dssp             SSHHHHHHHH---TTTSEEEEEESSHHHHHHHHHCTTSEEEEE-TSS-----------------------SSSSS-----
T ss_pred             cchHHhhhhc---ccceEEEeecCcHHHHHHhhhcCCCEEEEC-CccCC---------------------CCCcc-----
Confidence            4444444333   356899999999999999999999999985 44321                     11100     


Q ss_pred             ccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccc
Q 037779          204 KNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGV  255 (310)
Q Consensus       204 ~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai  255 (310)
                       .....++.+.++.+..++||++  -||| +++++.++.++|++||.+.|+|
T Consensus       133 -~~~~g~~~l~~~~~~~~~pv~A--lGGI-~~~~i~~l~~~Ga~gvAvi~aI  180 (180)
T PF02581_consen  133 -APPLGLDGLREIARASPIPVYA--LGGI-TPENIPELREAGADGVAVISAI  180 (180)
T ss_dssp             --TTCHHHHHHHHHHHTSSCEEE--ESS---TTTHHHHHHTT-SEEEESHHH
T ss_pred             -ccccCHHHHHHHHHhCCCCEEE--EcCC-CHHHHHHHHHcCCCEEEEEeeC
Confidence             0122466777777777899965  5999 6999999999999999999976

5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=99.46  E-value=6.3e-12  Score=110.32  Aligned_cols=176  Identities=19%  Similarity=0.242  Sum_probs=120.2

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhh-cCcceEeeccccch--HHHHHHHHcCCCeeeecC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSS-VTIPVMAKARIGHF--VEAQILEAIGVDYVDESE  122 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~-~~lPv~~kd~i~~~--~~~~~~~~aGad~v~~~~  122 (310)
                      +.++.+.+. ++++- +. .|. .+.++       ++.++.+++. .++|+.+...+.+.  ..++.+.++|+|++..+.
T Consensus        17 ~~~~~l~~~-i~~ie-ig-~~~-~~~~g-------~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~   85 (202)
T cd04726          17 ELAKKVPDG-VDIIE-AG-TPL-IKSEG-------MEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLG   85 (202)
T ss_pred             HHHHHhhhc-CCEEE-cC-CHH-HHHhC-------HHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEe
Confidence            678888887 88862 21 011 22233       6789999886 58898886554322  245778899999998554


Q ss_pred             CCC---hhHHHHHHHhcCCCCcEE---eecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCc
Q 037779          123 VLT---PADEENHINKHNFRVPFV---CGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDD  196 (310)
Q Consensus       123 ~~~---~~~~~~~~~~~~~~l~v~---~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  196 (310)
                      ..+   ..++.+.++++  ++.++   .++.|+.++.++...|+|++.++ +.+++.                   +.  
T Consensus        86 ~~~~~~~~~~i~~~~~~--g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~-~~~~~~-------------------~~--  141 (202)
T cd04726          86 AAPLSTIKKAVKAAKKY--GKEVQVDLIGVEDPEKRAKLLKLGVDIVILH-RGIDAQ-------------------AA--  141 (202)
T ss_pred             eCCHHHHHHHHHHHHHc--CCeEEEEEeCCCCHHHHHHHHHCCCCEEEEc-Cccccc-------------------cc--
Confidence            322   23455666554  45544   57889999988888899999885 222111                   00  


Q ss_pred             hhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHH
Q 037779          197 DEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARA  267 (310)
Q Consensus       197 d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~  267 (310)
                              +.....+.++.+.+..++|+  .+.||| +++++.+++++|+|++++||+|++++||.+.+++
T Consensus       142 --------~~~~~~~~i~~~~~~~~~~i--~~~GGI-~~~~i~~~~~~Gad~vvvGsai~~~~d~~~~~~~  201 (202)
T cd04726         142 --------GGWWPEDDLKKVKKLLGVKV--AVAGGI-TPDTLPEFKKAGADIVIVGRAITGAADPAEAARE  201 (202)
T ss_pred             --------CCCCCHHHHHHHHhhcCCCE--EEECCc-CHHHHHHHHhcCCCEEEEeehhcCCCCHHHHHhc
Confidence                    00123455566655456899  457999 5999999999999999999999999999877664

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>PRK04302 triosephosphate isomerase; Provisional

Probab=99.46  E-value=5.3e-12  Score=113.01  Aligned_cols=165  Identities=24%  Similarity=0.323  Sum_probs=117.5

Q ss_pred             ChHHHHHHHhhcCcceEeecccc-----c--hHHHHHHHHcCCCeeeecC---CCChhHHHHHHHh-cCCCCcEEeecCC
Q 037779           80 DPQLIKQIKSSVTIPVMAKARIG-----H--FVEAQILEAIGVDYVDESE---VLTPADEENHINK-HNFRVPFVCGCRN  148 (310)
Q Consensus        80 ~~~~i~~i~~~~~lPv~~kd~i~-----~--~~~~~~~~~aGad~v~~~~---~~~~~~~~~~~~~-~~~~l~v~~~v~t  148 (310)
                      ....++.+++.+++|+..++...     +  ...++.+.++|+|++++.+   .++..++.+.+.. +..++.+++++++
T Consensus        44 ~~~~l~~v~~~~~i~v~aq~~~~~~~G~~tg~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v~~  123 (223)
T PRK04302         44 QALDIRRVAEEVDIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCVNN  123 (223)
T ss_pred             CHHHHHHHHHhcCCeEEeccCCCCCCCCchhhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEcCC
Confidence            37788888888899999875432     1  1346788889999998543   2444455444444 4467888899999


Q ss_pred             HHHHHHHHHhCCCEEEEecC--CCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEE
Q 037779          149 LGESLRRIREGAAMIRTKGE--AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVV  225 (310)
Q Consensus       149 ~~ea~~a~~~Gad~I~v~g~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv  225 (310)
                      .+++..+.+.++++|.+.+.  .+++.                ...+..++          ...+..+.+++. .++|| 
T Consensus       124 ~~~~~~~~~~~~~~I~~~p~~~igt~~----------------~~~~~~~~----------~i~~~~~~ir~~~~~~pv-  176 (223)
T PRK04302        124 PETSAAAAALGPDYVAVEPPELIGTGI----------------PVSKAKPE----------VVEDAVEAVKKVNPDVKV-  176 (223)
T ss_pred             HHHHHHHhcCCCCEEEEeCccccccCC----------------CCCcCCHH----------HHHHHHHHHHhccCCCEE-
Confidence            99999888889999987642  22221                00000110          023444556553 36899 


Q ss_pred             EEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779          226 HFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV  272 (310)
Q Consensus       226 ~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~  272 (310)
                       +++|||++++++.++.+.|+|||+|||++++.+||...+++|.+.+
T Consensus       177 -i~GggI~~~e~~~~~~~~gadGvlVGsa~l~~~~~~~~~~~~~~~~  222 (223)
T PRK04302        177 -LCGAGISTGEDVKAALELGADGVLLASGVVKAKDPEAALRDLVSPL  222 (223)
T ss_pred             -EEECCCCCHHHHHHHHcCCCCEEEEehHHhCCcCHHHHHHHHHhhc
Confidence             6799999999999999999999999999999999999998887643

>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional

Probab=99.45  E-value=3.2e-12  Score=132.91  Aligned_cols=195  Identities=16%  Similarity=0.195  Sum_probs=132.9

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeee-cCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE-SEVL  124 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~-~~~~  124 (310)
                      +.++.+.++|+++| +||-...+.+.+     ......+..+++..+++++++|+      ++.+.++|+| ||. ...+
T Consensus        23 ~~l~~~l~~g~~~i-qlR~K~~~~~~~-----~~~a~~l~~l~~~~~~~liind~------~~la~~~~~d-VHlg~~dl   89 (755)
T PRK09517         23 GIVDSAISGGVSVV-QLRDKNAGVEDV-----RAAAKELKELCDARGVALVVNDR------LDVAVELGLH-VHIGQGDT   89 (755)
T ss_pred             HHHHHHHhcCCCEE-EEeCCCCCHHHH-----HHHHHHHHHHHHHhCCeEEEeCh------HHHHHHcCCC-eecCCCcC
Confidence            56788888999998 563111111111     11133445556666899999876      3467889999 883 3434


Q ss_pred             ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHH----h---CCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCch
Q 037779          125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIR----E---GAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDD  197 (310)
Q Consensus       125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~----~---Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  197 (310)
                      +.....+.   .+.+..+.++|||.+|+..+..    .   |+||+.+. +.+.                     +.++.
T Consensus        90 ~~~~~r~~---~~~~~~iG~S~h~~~e~~~~~~~~~~~g~~gaDYi~~G-pvf~---------------------T~tK~  144 (755)
T PRK09517         90 PYTQARRL---LPAHLELGLTIETLDQLEAVIAQCAETGVALPDVIGIG-PVAS---------------------TATKP  144 (755)
T ss_pred             CHHHHHHh---cCCCCEEEEeCCCHHHHHHHHhhhccCCCCCCCEEEEC-Cccc---------------------cCCCC
Confidence            43333322   3356789999999999876432    2   49999984 4332                     11110


Q ss_pred             hHHhhhccCCCcHHHHHHHHhcCC---CCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          198 EVFTFAKNIAAPYDLVMQTKQLGR---LPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       198 ~~~~~~~~~~~~~~l~~~i~~~~~---iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      +.     .....++.++++.+..+   +||++|  ||| +++++.++.++|++||.+.|+|++++||.+.+++|.+.++.
T Consensus       145 ~~-----~~~lG~~~l~~~~~~~~~~~iPv~Ai--GGI-~~~~~~~~~~~Ga~giAvisai~~a~d~~~a~~~l~~~~~~  216 (755)
T PRK09517        145 DA-----PPALGVDGIAEIAAVAQDHGIASVAI--GGV-GLRNAAELAATGIDGLCVVSAIMAAANPAAAARELRTAFQP  216 (755)
T ss_pred             CC-----CCCCCHHHHHHHHHhcCcCCCCEEEE--CCC-CHHHHHHHHHcCCCEEEEehHhhCCCCHHHHHHHHHHHHHH
Confidence            00     00124677777776655   999665  999 69999999999999999999999999999999999999998


Q ss_pred             CCChhhHHhhhh
Q 037779          275 YSDPDVLAEVSC  286 (310)
Q Consensus       275 ~~~~~~~~~~~~  286 (310)
                      .+.|..--|.++
T Consensus       217 ~~~~~~~~~~~~  228 (755)
T PRK09517        217 TRSPETQTELSQ  228 (755)
T ss_pred             hhcccccccccc
Confidence            877766555544

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=99.45  E-value=9.4e-12  Score=109.71  Aligned_cols=186  Identities=15%  Similarity=0.146  Sum_probs=120.1

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc-chHHHHHHHHcCCCeeeecCC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG-HFVEAQILEAIGVDYVDESEV  123 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~-~~~~~~~~~~aGad~v~~~~~  123 (310)
                      .+.++.+.++|++.|...-   -|.....+.  ...++.++++++.++.|+.+..++. ..+.++.+.++|+|.++.+..
T Consensus        14 ~~~~~~~~~~g~d~i~~~~---~Dg~~~~~~--~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~   88 (210)
T TIGR01163        14 GEEVKAVEEAGADWIHVDV---MDGHFVPNL--TFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPE   88 (210)
T ss_pred             HHHHHHHHHcCCCEEEEcC---CCCCCCCCc--ccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccC
Confidence            4789999999999984310   011111111  1347899999987778875544442 234567788999999775433


Q ss_pred             C--ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecC--CCCCchHHHHHHHHHhhcceecccccCchhH
Q 037779          124 L--TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGE--AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEV  199 (310)
Q Consensus       124 ~--~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  199 (310)
                      .  ......+.+++++....++++++|..+..+....++|++.+.+.  ..++.                   .+.    
T Consensus        89 ~~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~-------------------~~~----  145 (210)
T TIGR01163        89 ASEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQ-------------------KFI----  145 (210)
T ss_pred             CchhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcc-------------------ccc----
Confidence            2  23344555555665666667788877777777778998765422  11110                   000    


Q ss_pred             HhhhccCCCcHHHHHHHHhc-----CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 037779          200 FTFAKNIAAPYDLVMQTKQL-----GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAI  268 (310)
Q Consensus       200 ~~~~~~~~~~~~l~~~i~~~-----~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~  268 (310)
                             ....+.++.+++.     .++|+  .+.||| +++++.++++.|+|++++||+|++++||.+++++|
T Consensus       146 -------~~~~~~i~~i~~~~~~~~~~~~i--~v~GGI-~~env~~l~~~gad~iivgsai~~~~d~~~~~~~~  209 (210)
T TIGR01163       146 -------PDTLEKIREVRKMIDENGLSILI--EVDGGV-NDDNARELAEAGADILVAGSAIFGADDYKEVIRSL  209 (210)
T ss_pred             -------HHHHHHHHHHHHHHHhcCCCceE--EEECCc-CHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHh
Confidence                   0112233333322     13677  457999 59999999999999999999999999999888776

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>PRK05581 ribulose-phosphate 3-epimerase; Validated

Probab=99.44  E-value=8.5e-12  Score=110.93  Aligned_cols=189  Identities=14%  Similarity=0.156  Sum_probs=111.2

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCC---CCChHHHHHHHhhcCcceEeeccccc-hHHHHHHHHcCCCeeee
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVAR---MSDPQLIKQIKSSVTIPVMAKARIGH-FVEAQILEAIGVDYVDE  120 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~---~~~~~~i~~i~~~~~lPv~~kd~i~~-~~~~~~~~~aGad~v~~  120 (310)
                      .+.++.+.++|+++|+ +.     .  ..|...   .-.++.++++++.+..|+.+..++.. .+.++.+.++|+|.+..
T Consensus        19 ~~~~~~~~~~G~~~i~-l~-----~--~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~v~v   90 (220)
T PRK05581         19 GEEVKAVEAAGADWIH-VD-----V--MDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADIITF   90 (220)
T ss_pred             HHHHHHHHHcCCCEEE-Ee-----C--ccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE
Confidence            3789999999999994 31     1  111110   01367888888765544433333332 13556677899999654


Q ss_pred             cCCC--ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecC--CCCCchHHHHHHHHHhhcceecccccCc
Q 037779          121 SEVL--TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGE--AGTGNIVEAVRHVRSVMGDIRVLRNMDD  196 (310)
Q Consensus       121 ~~~~--~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~  196 (310)
                      +...  .+....+.+++++..+.+.+..+|..+..+....++|++.+.+.  ..++.                   ... 
T Consensus        91 h~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~-------------------~~~-  150 (220)
T PRK05581         91 HVEASEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQ-------------------KFI-  150 (220)
T ss_pred             eeccchhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcc-------------------ccc-
Confidence            4321  23344444444433333333335666666666667898876421  11110                   000 


Q ss_pred             hhHHhhhccCCCcHHHHHHHHhcC---CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779          197 DEVFTFAKNIAAPYDLVMQTKQLG---RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV  272 (310)
Q Consensus       197 d~~~~~~~~~~~~~~l~~~i~~~~---~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~  272 (310)
                                ....+.++.+++..   ++|+.+.+.||| +++++.++.+.|+|+|+|||+|++++||.+++++|++.+
T Consensus       151 ----------~~~~~~i~~~~~~~~~~~~~~~i~v~GGI-~~~nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~~~~  218 (220)
T PRK05581        151 ----------PEVLEKIRELRKLIDERGLDILIEVDGGI-NADNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRAEL  218 (220)
T ss_pred             ----------HHHHHHHHHHHHHHHhcCCCceEEEECCC-CHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHHh
Confidence                      00122223332221   223211357999 579999999999999999999999999999999998764

>TIGR00734 hisAF_rel hisA/hisF family protein

Probab=99.43  E-value=1.2e-11  Score=110.65  Aligned_cols=195  Identities=17%  Similarity=0.205  Sum_probs=124.3

Q ss_pred             ccceeeecCCcccc----------CCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceE
Q 037779           28 VGLAQMLRGGVIMD----------VVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVM   96 (310)
Q Consensus        28 ~~~~~~l~~g~i~~----------~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~   96 (310)
                      .+.++++.+|....          ..+| ++|+.|.+.|+++++..     |.....|  ...+.+.++++++.  +|+.
T Consensus        11 ~g~~Vr~~~G~~~~~~~~~~~~~~~~dP~~~a~~~~~~g~~~l~iv-----DLd~~~~--~~~n~~~i~~i~~~--~~v~   81 (221)
T TIGR00734        11 DGIAVAGKSGERESYPPLESVSRLSSSPDDAAKVIEEIGARFIYIA-----DLDRIVG--LGDNFSLLSKLSKR--VELI   81 (221)
T ss_pred             CCEEEEccccCcccccccccceecCCCHHHHHHHHHHcCCCEEEEE-----EcccccC--CcchHHHHHHHHhh--CcEE
Confidence            45667777666433          3465 88999999999998544     2222212  24568899999887  4999


Q ss_pred             eeccccchHHHHHHHH--cCCCeee-ecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCc
Q 037779           97 AKARIGHFVEAQILEA--IGVDYVD-ESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGN  173 (310)
Q Consensus        97 ~kd~i~~~~~~~~~~~--aGad~v~-~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~  173 (310)
                      +...+.+.++++.+..  .||+.|. .+..+..+++++.+.     ..+.+++++..            +..+|+..  .
T Consensus        82 vgGGirs~e~~~~~~~~l~~a~rvvigT~a~~~p~~l~~~~-----~vvslD~~~g~------------v~~~g~~~--~  142 (221)
T TIGR00734        82 ADCGVRSPEDLETLPFTLEFASRVVVATETLDITELLRECY-----TVVSLDFKEKF------------LDASGLFE--S  142 (221)
T ss_pred             EcCccCCHHHHHHHHhhhccceEEeecChhhCCHHHHHHhh-----hEEEEEeECCc------------cccccccc--c
Confidence            8888877777776654  3699986 555544444444331     23333332210            00111110  1


Q ss_pred             hHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779          174 IVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       174 ~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs  253 (310)
                      ..+..++....+. ...+..++.|++     ..+.+.++++.+.+..++|+  |++|||+|++|+.++.+.|+++|++||
T Consensus       143 ~~~~~~~~~~~g~-~ii~tdI~~dGt-----~~G~d~eli~~i~~~~~~pv--ia~GGi~s~ed~~~l~~~Ga~~vivgs  214 (221)
T TIGR00734       143 LEEVRDFLNSFDY-GLIVLDIHSVGT-----MKGPNLELLTKTLELSEHPV--MLGGGISGVEDLELLKEMGVSAVLVAT  214 (221)
T ss_pred             HHHHHHHHHhcCC-EEEEEECCcccc-----CCCCCHHHHHHHHhhCCCCE--EEeCCCCCHHHHHHHHHCCCCEEEEhH
Confidence            2223333333332 123344555543     24568999999998888999  789999999999999999999999999


Q ss_pred             ccccC
Q 037779          254 GVFKS  258 (310)
Q Consensus       254 ai~~~  258 (310)
                      +|+..
T Consensus       215 al~~g  219 (221)
T TIGR00734       215 AVHKG  219 (221)
T ss_pred             HhhCC
Confidence            99874

This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.

>PRK08745 ribulose-phosphate 3-epimerase; Provisional

Probab=99.43  E-value=5.6e-11  Score=106.19  Aligned_cols=185  Identities=17%  Similarity=0.193  Sum_probs=130.5

Q ss_pred             HHHHHHHHcCCcEEE----ecccccchhhhcCCCCCCCChHHHHHHHhh-cCcceEeeccccchH-HHHHHHHcCCCeee
Q 037779           46 EQARIAEEAGACAVM----ALERVPADIRAQGGVARMSDPQLIKQIKSS-VTIPVMAKARIGHFV-EAQILEAIGVDYVD  119 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~----~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~-~~lPv~~kd~i~~~~-~~~~~~~aGad~v~  119 (310)
                      +.++.+.++|+++++    +.+++|. . .|+       ++.++.+++. +++|+-++-.+.+.+ .++.+.++|||.|.
T Consensus        20 ~~i~~l~~~g~d~lHiDimDG~FVPN-~-tfg-------~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~   90 (223)
T PRK08745         20 EEVDNVLKAGADWVHFDVMDNHYVPN-L-TIG-------PMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTIS   90 (223)
T ss_pred             HHHHHHHHcCCCEEEEecccCccCCC-c-ccC-------HHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEE
Confidence            679999999999973    2335553 2 344       8899999998 699999888886543 45788889999987


Q ss_pred             ec-C-CCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEe--cCCCCC--chHHHHHHHHHhhcceecccc
Q 037779          120 ES-E-VLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTK--GEAGTG--NIVEAVRHVRSVMGDIRVLRN  193 (310)
Q Consensus       120 ~~-~-~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~--g~~~~~--~~~~~~~~~~~~~~~~~~l~~  193 (310)
                      .+ + ...+.+.++.+++++....+.....|+-+...-+-.-.|+|.+.  .++++|  .+.+                 
T Consensus        91 ~H~Ea~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ~fi~~-----------------  153 (223)
T PRK08745         91 FHPEASRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPS-----------------  153 (223)
T ss_pred             EcccCcccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHH-----------------
Confidence            54 2 23466788888887766777777777766665555567876432  344433  1111                 


Q ss_pred             cCchhHHhhhccCCCcHHHHHHHH----hc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 037779          194 MDDDEVFTFAKNIAAPYDLVMQTK----QL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAI  268 (310)
Q Consensus       194 ~~~d~~~~~~~~~~~~~~l~~~i~----~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~  268 (310)
                                     ..+.+++++    +. .++.+  -+.||| +.+++.++.++|||.+++||+|++++||.+.++++
T Consensus       154 ---------------~l~KI~~l~~~~~~~~~~~~I--eVDGGI-~~eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~l  215 (223)
T PRK08745        154 ---------------ALDKLRAIRKKIDALGKPIRL--EIDGGV-KADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQM  215 (223)
T ss_pred             ---------------HHHHHHHHHHHHHhcCCCeeE--EEECCC-CHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHH
Confidence                           122222222    21 12334  458999 59999999999999999999999999999999999


Q ss_pred             HHHHHc
Q 037779          269 VQAVTN  274 (310)
Q Consensus       269 ~~~~~~  274 (310)
                      ++.+.+
T Consensus       216 r~~~~~  221 (223)
T PRK08745        216 RAAVAA  221 (223)
T ss_pred             HHHHHh
Confidence            887643

>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]

Probab=99.41  E-value=6.7e-11  Score=104.06  Aligned_cols=188  Identities=16%  Similarity=0.201  Sum_probs=134.4

Q ss_pred             HHHHHHHHcCCcEEE----ecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchH-HHHHHHHcCCCeeee
Q 037779           46 EQARIAEEAGACAVM----ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFV-EAQILEAIGVDYVDE  120 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~----~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~-~~~~~~~aGad~v~~  120 (310)
                      +.+++++++|+++++    +.+++|. . .|+       +..++++++.+..|+-+.-++...+ .++.+.++|||.|..
T Consensus        20 ~el~~~~~agad~iH~DVMDghFVPN-i-TfG-------p~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~   90 (220)
T COG0036          20 EELKALEAAGADLIHIDVMDGHFVPN-I-TFG-------PPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITF   90 (220)
T ss_pred             HHHHHHHHcCCCEEEEeccCCCcCCC-c-ccC-------HHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEE
Confidence            789999999999973    3336664 2 455       8899999999999999998887544 457888899999874


Q ss_pred             c--CCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEe--cCCCCC--chHHHHHHHHHhhcceeccccc
Q 037779          121 S--EVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTK--GEAGTG--NIVEAVRHVRSVMGDIRVLRNM  194 (310)
Q Consensus       121 ~--~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~--g~~~~~--~~~~~~~~~~~~~~~~~~l~~~  194 (310)
                      +  +...+.+.++.+++++....+.....|+-+.....-.-+|+|.+.  .|+++|  .+.++++.+             
T Consensus        91 H~E~~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki-------------  157 (220)
T COG0036          91 HAEATEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKI-------------  157 (220)
T ss_pred             EeccCcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcccccCHHHHHHH-------------
Confidence            3  334577888888887666667777888888888777778877432  455544  222222211             


Q ss_pred             CchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779          195 DDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       195 ~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                                     .++.+.+.+ .. ++.+-+.||| +.+++.++.++|||-+++||++++..|-.+.++.++....
T Consensus       158 ---------------~~lr~~~~~-~~-~~~IeVDGGI-~~~t~~~~~~AGad~~VaGSalF~~~d~~~~i~~~~~~~~  218 (220)
T COG0036         158 ---------------RELRAMIDE-RL-DILIEVDGGI-NLETIKQLAAAGADVFVAGSALFGADDYKATIRELRGELL  218 (220)
T ss_pred             ---------------HHHHHHhcc-cC-CeEEEEeCCc-CHHHHHHHHHcCCCEEEEEEEEeCCccHHHHHHHHHHHhh
Confidence                           112222222 11 3333568999 5999999999999999999999999997777777766553

>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=5.7e-12  Score=118.63  Aligned_cols=149  Identities=29%  Similarity=0.448  Sum_probs=111.1

Q ss_pred             HHHHHHHHcCCcEEEecc---cccchhhhcCCCCCCCChHHHHHH----Hhhc-CcceEeeccccchHHHHHHHHcCCCe
Q 037779           46 EQARIAEEAGACAVMALE---RVPADIRAQGGVARMSDPQLIKQI----KSSV-TIPVMAKARIGHFVEAQILEAIGVDY  117 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~---~~~~d~r~~~G~~~~~~~~~i~~i----~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~  117 (310)
                      +.|+.+.+.|++.| +||   |.|+-.+...|+.++.+++++.++    ++++ ++||++|.++|+.+.           
T Consensus        83 eaA~~~~~~g~~~I-dlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~-----------  150 (323)
T COG0042          83 EAAKIAEELGADII-DLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDD-----------  150 (323)
T ss_pred             HHHHHHHhcCCCEE-eeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEecccCcc-----------
Confidence            66889999998988 999   555555555689999999987655    5567 499999999984211           


Q ss_pred             eeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCch
Q 037779          118 VDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDD  197 (310)
Q Consensus       118 v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  197 (310)
                          + ..                      ..+-++.+.+.|++.+.+||+...                   ..+.   
T Consensus       151 ----~-~~----------------------~~~ia~~~~~~g~~~ltVHgRtr~-------------------~~y~---  181 (323)
T COG0042         151 ----D-IL----------------------ALEIARILEDAGADALTVHGRTRA-------------------QGYL---  181 (323)
T ss_pred             ----c-cc----------------------HHHHHHHHHhcCCCEEEEecccHH-------------------hcCC---
Confidence                0 00                      112234455678999999976211                   1111   


Q ss_pred             hHHhhhccCCCcHHHHHHHHhcCC-CCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHH
Q 037779          198 EVFTFAKNIAAPYDLVMQTKQLGR-LPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVRRA  265 (310)
Q Consensus       198 ~~~~~~~~~~~~~~l~~~i~~~~~-iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~dp~~~~  265 (310)
                              -..+|+.+..+++..+ +||  |++|+|.|++++.++++ .|+||||+|++.+..++....+
T Consensus       182 --------~~ad~~~I~~vk~~~~~ipv--i~NGdI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i  241 (323)
T COG0042         182 --------GPADWDYIKELKEAVPSIPV--IANGDIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQI  241 (323)
T ss_pred             --------CccCHHHHHHHHHhCCCCeE--EeCCCcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHH
Confidence                    1247999999999876 899  78999999999999998 5899999999999988876554

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=99.41  E-value=3.9e-11  Score=107.80  Aligned_cols=181  Identities=20%  Similarity=0.286  Sum_probs=123.7

Q ss_pred             CccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc-----chHHHHHHH
Q 037779           37 GVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG-----HFVEAQILE  111 (310)
Q Consensus        37 g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~-----~~~~~~~~~  111 (310)
                      +.|....++++++.+.++|+-.+...+.++.+          ...+.++++++..+.|+.++.+..     ..+.++.+.
T Consensus         8 a~m~g~~~~~~~~~~~~~G~ig~i~~~~~~~~----------~~~~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~   77 (236)
T cd04730           8 APMAGVSTPELAAAVSNAGGLGFIGAGYLTPE----------ALRAEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVAL   77 (236)
T ss_pred             CCCCCCCCHHHHHHHHhCCCccccCCCCCCHH----------HHHHHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHH
Confidence            45556678999999999986443111000000          013455666655445655554443     224678888


Q ss_pred             HcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecc
Q 037779          112 AIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVL  191 (310)
Q Consensus       112 ~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l  191 (310)
                      ++|+|.|+.+.. .+.++.+.+++  .++.++..+++.++++.+.+.|+|++.+.+...+++.                 
T Consensus        78 ~~g~d~v~l~~~-~~~~~~~~~~~--~~i~~i~~v~~~~~~~~~~~~gad~i~~~~~~~~G~~-----------------  137 (236)
T cd04730          78 EEGVPVVSFSFG-PPAEVVERLKA--AGIKVIPTVTSVEEARKAEAAGADALVAQGAEAGGHR-----------------  137 (236)
T ss_pred             hCCCCEEEEcCC-CCHHHHHHHHH--cCCEEEEeCCCHHHHHHHHHcCCCEEEEeCcCCCCCC-----------------
Confidence            999999986554 45666666665  3578888889999999988999999987654222210                 


Q ss_pred             cccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779          192 RNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD  260 (310)
Q Consensus       192 ~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d  260 (310)
                       . .        .+ ...+++++.+++..++||  ++.|||++++++.++++.|+|||++||+|++..+
T Consensus       138 -~-~--------~~-~~~~~~i~~i~~~~~~Pv--i~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e  193 (236)
T cd04730         138 -G-T--------FD-IGTFALVPEVRDAVDIPV--IAAGGIADGRGIAAALALGADGVQMGTRFLATEE  193 (236)
T ss_pred             -C-c--------cc-cCHHHHHHHHHHHhCCCE--EEECCCCCHHHHHHHHHcCCcEEEEchhhhcCcc
Confidence             0 0        00 124677788777667899  5689999899999999999999999999999764

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=99.40  E-value=3e-11  Score=106.37  Aligned_cols=182  Identities=14%  Similarity=0.166  Sum_probs=110.1

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCC---CCCChHHHHHHHhhcCcceEeeccccc-hHHHHHHHHcCCCeeeec
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVA---RMSDPQLIKQIKSSVTIPVMAKARIGH-FVEAQILEAIGVDYVDES  121 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~---~~~~~~~i~~i~~~~~lPv~~kd~i~~-~~~~~~~~~aGad~v~~~  121 (310)
                      +.++.+.++|+++++ ++       ...|..   ..-.++.++++++.++.|+.+..++.+ .+.++.+.++|+|.++.+
T Consensus        16 ~~~~~~~~~G~~~i~-l~-------~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~vh   87 (211)
T cd00429          16 EELKRLEEAGADWIH-ID-------VMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITFH   87 (211)
T ss_pred             HHHHHHHHcCCCEEE-Ee-------cccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEC
Confidence            679999999999984 31       111110   001257888888766555544444432 235677789999997654


Q ss_pred             CCC--ChhHHHHHHHhcCCCCcEEeec--CCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCch
Q 037779          122 EVL--TPADEENHINKHNFRVPFVCGC--RNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDD  197 (310)
Q Consensus       122 ~~~--~~~~~~~~~~~~~~~l~v~~~v--~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  197 (310)
                      ...  .+.+..+.+++  .++.++..+  ++..+..+....++|++.+.+...+++-                 ....  
T Consensus        88 ~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg-----------------~~~~--  146 (211)
T cd00429          88 AEATDHLHRTIQLIKE--LGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGG-----------------QKFI--  146 (211)
T ss_pred             ccchhhHHHHHHHHHH--CCCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCC-----------------cccC--
Confidence            332  23344444444  345544444  3444544445556899876432111110                 0000  


Q ss_pred             hHHhhhccCCCcHHHHHHHHhcC-----CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 037779          198 EVFTFAKNIAAPYDLVMQTKQLG-----RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAI  268 (310)
Q Consensus       198 ~~~~~~~~~~~~~~l~~~i~~~~-----~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~  268 (310)
                               ....+.++.+++..     ++|+  ++.|||+ ++++.++.+.|+|+|++||+|++.+||.+.+++|
T Consensus       147 ---------~~~~~~i~~~~~~~~~~~~~~pi--~v~GGI~-~env~~~~~~gad~iivgsai~~~~~~~~~~~~~  210 (211)
T cd00429         147 ---------PEVLEKIRKLRELIPENNLNLLI--EVDGGIN-LETIPLLAEAGADVLVAGSALFGSDDYAEAIKEL  210 (211)
T ss_pred             ---------HHHHHHHHHHHHHHHhcCCCeEE--EEECCCC-HHHHHHHHHcCCCEEEECHHHhCCCCHHHHHHHh
Confidence                     00123334443322     3788  4579995 8999999999999999999999999999888876

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=99.40  E-value=3.2e-11  Score=106.37  Aligned_cols=178  Identities=21%  Similarity=0.189  Sum_probs=114.9

Q ss_pred             HHHHHHHHcCCcEEEecccccchh-hhcCCCCCCCChHHHHHHHhhc-CcceEeeccccch--HHHHHHHHcCCCeeeec
Q 037779           46 EQARIAEEAGACAVMALERVPADI-RAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHF--VEAQILEAIGVDYVDES  121 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~-r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~--~~~~~~~~aGad~v~~~  121 (310)
                      +.++.+ +.|.++|-+-    +.. ..++       ++.++.+++.. +.++.+...+-+.  ..++.+.++|||++..+
T Consensus        16 ~~~~~l-~~~v~~iev~----~~l~~~~g-------~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh   83 (206)
T TIGR03128        16 ELAEKV-ADYVDIIEIG----TPLIKNEG-------IEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVL   83 (206)
T ss_pred             HHHHHc-ccCeeEEEeC----CHHHHHhC-------HHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEe
Confidence            567777 6788877321    111 1222       67888888774 5555544322221  24778889999999755


Q ss_pred             CCCC---hhHHHHHHHhcCCCCcEEeecCC----HHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceeccccc
Q 037779          122 EVLT---PADEENHINKHNFRVPFVCGCRN----LGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNM  194 (310)
Q Consensus       122 ~~~~---~~~~~~~~~~~~~~l~v~~~v~t----~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~  194 (310)
                      ...+   +.++++.+++  .++.+++++.+    .++++.+.+.|+|+++++ +.+++.                   ..
T Consensus        84 ~~~~~~~~~~~i~~~~~--~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~-pg~~~~-------------------~~  141 (206)
T TIGR03128        84 GVADDATIKGAVKAAKK--HGKEVQVDLINVKDKVKRAKELKELGADYIGVH-TGLDEQ-------------------AK  141 (206)
T ss_pred             ccCCHHHHHHHHHHHHH--cCCEEEEEecCCCChHHHHHHHHHcCCCEEEEc-CCcCcc-------------------cC
Confidence            3322   3456666655  46777766433    367788888899999986 333221                   00


Q ss_pred             CchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 037779          195 DDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQA  271 (310)
Q Consensus       195 ~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~  271 (310)
                                 .....+.++.+++.. ..++  .+.||| +++++.+++++|++++++||+|++++||.+.++.|++.
T Consensus       142 -----------~~~~~~~i~~l~~~~~~~~i--~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~~~  205 (206)
T TIGR03128       142 -----------GQNPFEDLQTILKLVKEARV--AVAGGI-NLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQIRKL  205 (206)
T ss_pred             -----------CCCCHHHHHHHHHhcCCCcE--EEECCc-CHHHHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHhh
Confidence                       011233444444432 2344  347999 69999999999999999999999999999999988753

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=99.40  E-value=2.2e-11  Score=111.18  Aligned_cols=181  Identities=23%  Similarity=0.271  Sum_probs=114.8

Q ss_pred             HHHHHHHHcCCcEEEecc-ccc-------c----hhhh-cCCCCCCCChHHHHHHHhh-cCcceEeecccc------chH
Q 037779           46 EQARIAEEAGACAVMALE-RVP-------A----DIRA-QGGVARMSDPQLIKQIKSS-VTIPVMAKARIG------HFV  105 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~-------~----d~r~-~~G~~~~~~~~~i~~i~~~-~~lPv~~kd~i~------~~~  105 (310)
                      +.++.+.++|++.| -|. |..       .    ..|+ ..|.....-++.++++|+. +++|+......+      ...
T Consensus        28 ~~~~~l~~~Gad~i-ElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~  106 (256)
T TIGR00262        28 EIIKTLIEAGADAL-ELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEE  106 (256)
T ss_pred             HHHHHHHHcCCCEE-EECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHH
Confidence            67999999999997 443 221       1    1111 2244434456778888876 789976433322      134


Q ss_pred             HHHHHHHcCCCeeeecCCC--ChhHHHHHHHhcCCCCcEEeecCC-HHHHHHHHHhCCCEEEEec-CCCCCchHHHHHHH
Q 037779          106 EAQILEAIGVDYVDESEVL--TPADEENHINKHNFRVPFVCGCRN-LGESLRRIREGAAMIRTKG-EAGTGNIVEAVRHV  181 (310)
Q Consensus       106 ~~~~~~~aGad~v~~~~~~--~~~~~~~~~~~~~~~l~v~~~v~t-~~ea~~a~~~Gad~I~v~g-~~~~~~~~~~~~~~  181 (310)
                      .++.+.++|++.+++++..  ...++.+.+++++.....++..+| .+.+....+....++.+.+ .++||.-       
T Consensus       107 f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs~~G~TG~~-------  179 (256)
T TIGR00262       107 FYAKCKEVGVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVSRAGVTGAR-------  179 (256)
T ss_pred             HHHHHHHcCCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEECCCCCCCc-------
Confidence            6788899999999877652  123455556666666555555555 4444444444332443321 1333310       


Q ss_pred             HHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          182 RSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       182 ~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                                ..+.           ....+.++.+++..+.||  +++|||+|+++++++.++|||||+|||+|++
T Consensus       180 ----------~~~~-----------~~~~~~i~~lr~~~~~pi--~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~  232 (256)
T TIGR00262       180 ----------NRAA-----------SALNELVKRLKAYSAKPV--LVGFGISKPEQVKQAIDAGADGVIVGSAIVK  232 (256)
T ss_pred             ----------ccCC-----------hhHHHHHHHHHhhcCCCE--EEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence                      0011           124667788887767898  5699999999999999999999999999987

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=99.40  E-value=8e-12  Score=115.80  Aligned_cols=175  Identities=25%  Similarity=0.386  Sum_probs=132.3

Q ss_pred             HHHHHHcCCCeeeec----C--CCChhHHHHHHHhcCCC-CcEEeecCCHHHHHHHHH-----hCCCEEEEe--cCC--C
Q 037779          107 AQILEAIGVDYVDES----E--VLTPADEENHINKHNFR-VPFVCGCRNLGESLRRIR-----EGAAMIRTK--GEA--G  170 (310)
Q Consensus       107 ~~~~~~aGad~v~~~----~--~~~~~~~~~~~~~~~~~-l~v~~~v~t~~ea~~a~~-----~Gad~I~v~--g~~--~  170 (310)
                      .+.+.+.|++.|...    +  ......+.+.+...++. ++-.++|+|.+|+.+..+     .|-+.|++.  ++.  .
T Consensus       100 ~~a~~asg~e~vTva~rr~~~~~~~~~~~~~~~~~~~~~~lpNTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~l  179 (326)
T PRK11840        100 AAAVEASGAEIVTVAVRRVNVSDPGAPMLTDYIDPKKYTYLPNTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTL  179 (326)
T ss_pred             HHHHHHhCCCEEEEEEEeecCcCCCcchHHHhhhhcCCEECccCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCc
Confidence            356777899998521    1  11224677777765555 788999999999987664     266888864  442  2


Q ss_pred             CCchHHHHHHHHHhhcc-eecccccCchhHHhh-------------------hccCCCcHHHHHHHHhcCCCCEEEEccC
Q 037779          171 TGNIVEAVRHVRSVMGD-IRVLRNMDDDEVFTF-------------------AKNIAAPYDLVMQTKQLGRLPVVHFAAG  230 (310)
Q Consensus       171 ~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~~~~-------------------~~~~~~~~~l~~~i~~~~~iPVv~ia~G  230 (310)
                      .+++.+++++++++.++ |.++++..+|+....                   .+++. +.+.++.+.+..++||  +..+
T Consensus       180 lpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl~~pIGsg~gv~-~p~~i~~~~e~~~vpV--ivdA  256 (326)
T PRK11840        180 YPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLEDAGAVAVMPLGAPIGSGLGIQ-NPYTIRLIVEGATVPV--LVDA  256 (326)
T ss_pred             ccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcCCEEEeeccccccCCCCCC-CHHHHHHHHHcCCCcE--EEeC
Confidence            35678999999999776 888899888777431                   01111 4666777777678999  5689


Q ss_pred             CCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChhhHHhh
Q 037779          231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEV  284 (310)
Q Consensus       231 GI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~~~~~~  284 (310)
                      ||++++|+.+++++|||||++.|+|.+++||..|+++|+.++++.+.......+
T Consensus       257 GIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~av~aGr~a~~ag~~  310 (326)
T PRK11840        257 GVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLAVEAGRLAYLAGRM  310 (326)
T ss_pred             CCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999999987665444433

>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1

Probab=99.39  E-value=1.7e-11  Score=115.88  Aligned_cols=196  Identities=20%  Similarity=0.298  Sum_probs=126.2

Q ss_pred             CCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccch---HH------
Q 037779           36 GGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHF---VE------  106 (310)
Q Consensus        36 ~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~---~~------  106 (310)
                      +|.|....++++|.+..++|.-++.-....+.+  .+        -+.|+++++.++-|+.++.+....   ..      
T Consensus        16 qapM~~is~~~LaaAVs~aGglG~l~~~~~~~~--~l--------~~~i~~~~~~t~~pfgvnl~~~~~~~~~~~~~~~~   85 (330)
T PF03060_consen   16 QAPMGGISTPELAAAVSNAGGLGFLGAGGLTPE--QL--------REEIRKIRALTDKPFGVNLFLPPPDPADEEDAWPK   85 (330)
T ss_dssp             E---TTTSSHHHHHHHHHTTSBEEEECTTSSHH--HH--------HHHHHHHHHH-SS-EEEEEETTSTTHHHH-HHHHH
T ss_pred             cCCCCCCChHHHHHHHHhCCCEeeccccccChH--HH--------HHHHHHHHhhccccccccccccCcccchhhhhhhh
Confidence            355666788999999999999886322111111  11        346778888888899887655311   11      


Q ss_pred             ------HHHHHHcCCC--------------eeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEe
Q 037779          107 ------AQILEAIGVD--------------YVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       107 ------~~~~~~aGad--------------~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                            .+...+.|..              .|..+...++.++++.++.  .++.++..+.|+++++++.+.|+|.|.+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p~~~~i~~l~~--~gi~v~~~v~s~~~A~~a~~~G~D~iv~q  163 (330)
T PF03060_consen   86 ELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLPPPEVIERLHA--AGIKVIPQVTSVREARKAAKAGADAIVAQ  163 (330)
T ss_dssp             HTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC-HHHHHHHHH--TT-EEEEEESSHHHHHHHHHTT-SEEEEE
T ss_pred             hhHHHHHHHHHHhCcccccccccccccceEEEEeecccchHHHHHHHHH--cCCccccccCCHHHHHHhhhcCCCEEEEe
Confidence                  2344445555              7765556555788888876  46899999999999999999999999998


Q ss_pred             cCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCC
Q 037779          167 GEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGC  246 (310)
Q Consensus       167 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~Ga  246 (310)
                      |...+||..                  .          .....+.+++.+.+..++||  |++|||.+.+++..++.+||
T Consensus       164 G~eAGGH~g------------------~----------~~~~~~~L~~~v~~~~~iPV--iaAGGI~dg~~iaaal~lGA  213 (330)
T PF03060_consen  164 GPEAGGHRG------------------F----------EVGSTFSLLPQVRDAVDIPV--IAAGGIADGRGIAAALALGA  213 (330)
T ss_dssp             -TTSSEE-------------------------------SSG-HHHHHHHHHHH-SS-E--EEESS--SHHHHHHHHHCT-
T ss_pred             ccccCCCCC------------------c----------cccceeeHHHHHhhhcCCcE--EEecCcCCHHHHHHHHHcCC
Confidence            876666521                  0          01135778888888888999  68999999999999999999


Q ss_pred             CEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          247 DGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       247 dgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      +||.+||.|+-++.- .....+++.+.+
T Consensus       214 ~gV~~GTrFl~t~Es-~~~~~~K~~l~~  240 (330)
T PF03060_consen  214 DGVQMGTRFLATEES-GASDAYKQALVD  240 (330)
T ss_dssp             SEEEESHHHHTSTTS--S-HHHHHHHHH
T ss_pred             CEeecCCeEEecccc-cChHHHHHHHHh
Confidence            999999999987642 122444444443

13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=99.39  E-value=4.5e-11  Score=104.39  Aligned_cols=154  Identities=16%  Similarity=0.158  Sum_probs=111.5

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC-cceEeeccccchHHHHHHHHcCCCeeeecCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT-IPVMAKARIGHFVEAQILEAIGVDYVDESEVL  124 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~-lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~~  124 (310)
                      +.++.+.++|++++ ++       +.....    ..+.++.+++... +++.+.... +.+.++.+..+|+++++.+.  
T Consensus        20 ~~~~~l~~~G~~~v-ev-------~~~~~~----~~~~i~~l~~~~~~~~iGag~v~-~~~~~~~a~~~Ga~~i~~p~--   84 (190)
T cd00452          20 ALAEALIEGGIRAI-EI-------TLRTPG----ALEAIRALRKEFPEALIGAGTVL-TPEQADAAIAAGAQFIVSPG--   84 (190)
T ss_pred             HHHHHHHHCCCCEE-EE-------eCCChh----HHHHHHHHHHHCCCCEEEEEeCC-CHHHHHHHHHcCCCEEEcCC--
Confidence            67999999999998 34       222211    2567888887764 444333332 34788899999999998432  


Q ss_pred             ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779          125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK  204 (310)
Q Consensus       125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  204 (310)
                      ...++.+..+.  .++.+++++.|++|+..+.+.|+|++++...  +                                 
T Consensus        85 ~~~~~~~~~~~--~~~~~i~gv~t~~e~~~A~~~Gad~i~~~p~--~---------------------------------  127 (190)
T cd00452          85 LDPEVVKAANR--AGIPLLPGVATPTEIMQALELGADIVKLFPA--E---------------------------------  127 (190)
T ss_pred             CCHHHHHHHHH--cCCcEECCcCCHHHHHHHHHCCCCEEEEcCC--c---------------------------------
Confidence            23455555554  4678888999999999999999999998521  0                                 


Q ss_pred             cCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc
Q 037779          205 NIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF  256 (310)
Q Consensus       205 ~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~  256 (310)
                       .. ..+.++.+++.. ++|+  ++.||| +++++.+++++|+++|.+||.++
T Consensus       128 -~~-g~~~~~~l~~~~~~~p~--~a~GGI-~~~n~~~~~~~G~~~v~v~s~i~  175 (190)
T cd00452         128 -AV-GPAYIKALKGPFPQVRF--MPTGGV-SLDNAAEWLAAGVVAVGGGSLLP  175 (190)
T ss_pred             -cc-CHHHHHHHHhhCCCCeE--EEeCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence             01 244556665533 5788  567999 79999999999999999999999

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>PRK08999 hypothetical protein; Provisional

Probab=99.38  E-value=1.3e-11  Score=115.78  Aligned_cols=164  Identities=15%  Similarity=0.128  Sum_probs=111.2

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-CCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-EVL  124 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~~~  124 (310)
                      +.++.+.++|+++| +++-...+.+.+     ......++++++..+++++++++.      +.+.+.|+|+||.. ..+
T Consensus       148 ~~~~~~l~~g~~~v-qlR~k~~~~~~~-----~~~~~~l~~~~~~~~~~liind~~------~la~~~~~~GvHl~~~d~  215 (312)
T PRK08999        148 ARLERALAAGIRLI-QLRAPQLPPAAY-----RALARAALGLCRRAGAQLLLNGDP------ELAEDLGADGVHLTSAQL  215 (312)
T ss_pred             HHHHHHHHCCCcEE-EEeCCCCCHHHH-----HHHHHHHHHHHHHhCCEEEEECcH------HHHHhcCCCEEEcChhhc
Confidence            45777789999998 553111111111     111344555666678999998764      46788999999933 333


Q ss_pred             ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779          125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK  204 (310)
Q Consensus       125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  204 (310)
                      +....    ++.+.+..+.+++||.+|+..+.+.|+||+.+. +.+.+.                     ++..      
T Consensus       216 ~~~~~----r~~~~~~~ig~S~h~~~~~~~a~~~~~dyi~~g-pvf~t~---------------------tk~~------  263 (312)
T PRK08999        216 AALAA----RPLPAGRWVAASCHDAEELARAQRLGVDFAVLS-PVQPTA---------------------SHPG------  263 (312)
T ss_pred             ChHhh----ccCCCCCEEEEecCCHHHHHHHHhcCCCEEEEC-CCcCCC---------------------CCCC------
Confidence            32222    223456889999999999999999999999984 544221                     1100      


Q ss_pred             cCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc
Q 037779          205 NIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF  256 (310)
Q Consensus       205 ~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~  256 (310)
                      ......+.++.+.+..++||++|  ||| +++++.+++++|++||.+-|+|+
T Consensus       264 ~~~~g~~~~~~~~~~~~~Pv~Ai--GGI-~~~~~~~~~~~g~~gva~i~~~~  312 (312)
T PRK08999        264 AAPLGWEGFAALIAGVPLPVYAL--GGL-GPGDLEEAREHGAQGIAGIRGLW  312 (312)
T ss_pred             CCCCCHHHHHHHHHhCCCCEEEE--CCC-CHHHHHHHHHhCCCEEEEEEEeC
Confidence            01123566777777778999665  999 79999999999999999999874

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=99.37  E-value=4.1e-11  Score=109.64  Aligned_cols=180  Identities=14%  Similarity=0.170  Sum_probs=117.9

Q ss_pred             HHHHHHHHcCCcEEEecc-ccc-------c----hhhhc-CCCCCCCChHHHHHHHhhcCcceEeecccc------chHH
Q 037779           46 EQARIAEEAGACAVMALE-RVP-------A----DIRAQ-GGVARMSDPQLIKQIKSSVTIPVMAKARIG------HFVE  106 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~-------~----d~r~~-~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~------~~~~  106 (310)
                      ++++.+.++||+.| -|. |..       +    ..|+. +|.....-++.++++|+..++|++.....+      ...+
T Consensus        33 ~~~~~l~~~Gad~i-ElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F  111 (263)
T CHL00200         33 KALKILDKKGADII-ELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHYGINKF  111 (263)
T ss_pred             HHHHHHHHCCCCEE-EECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHH
Confidence            67999999999987 443 211       1    11221 233333446778888877889977654443      2246


Q ss_pred             HHHHHHcCCCeeeecCCCChh---HHHHHHHhcCCCCcEEeecCCHHHHHHH-HHhCCCEEEEe-cCCCCCchHHHHHHH
Q 037779          107 AQILEAIGVDYVDESEVLTPA---DEENHINKHNFRVPFVCGCRNLGESLRR-IREGAAMIRTK-GEAGTGNIVEAVRHV  181 (310)
Q Consensus       107 ~~~~~~aGad~v~~~~~~~~~---~~~~~~~~~~~~l~v~~~v~t~~ea~~a-~~~Gad~I~v~-g~~~~~~~~~~~~~~  181 (310)
                      ++.+.++|+|++++++. +++   ++.+.+++++.....++..+|..+..+. .+..-.+|..- ..+.||.-       
T Consensus       112 ~~~~~~aGvdgviipDL-P~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS~~GvTG~~-------  183 (263)
T CHL00200        112 IKKISQAGVKGLIIPDL-PYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVSTTGVTGLK-------  183 (263)
T ss_pred             HHHHHHcCCeEEEecCC-CHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEcCCCCCCCC-------
Confidence            78899999999998765 334   4445556677777777777776554444 44433466542 22333310       


Q ss_pred             HHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          182 RSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       182 ~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                                ..+.           ..-.++++.+++..+.|+  .+.+||+++++++++.+.|||||+|||+|++
T Consensus       184 ----------~~~~-----------~~~~~~i~~ir~~t~~Pi--~vGFGI~~~e~~~~~~~~GADGvVVGSalv~  236 (263)
T CHL00200        184 ----------TELD-----------KKLKKLIETIKKMTNKPI--ILGFGISTSEQIKQIKGWNINGIVIGSACVQ  236 (263)
T ss_pred             ----------cccc-----------HHHHHHHHHHHHhcCCCE--EEECCcCCHHHHHHHHhcCCCEEEECHHHHH
Confidence                      0000           113567777777778999  4599999999999999999999999999954

>PLN02591 tryptophan synthase

Probab=99.37  E-value=4.6e-11  Score=108.43  Aligned_cols=180  Identities=17%  Similarity=0.207  Sum_probs=118.0

Q ss_pred             HHHHHHHHcCCcEEEecc-ccc-------c----hhhhc-CCCCCCCChHHHHHHHhhcCcceEeecccc------chHH
Q 037779           46 EQARIAEEAGACAVMALE-RVP-------A----DIRAQ-GGVARMSDPQLIKQIKSSVTIPVMAKARIG------HFVE  106 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~-------~----d~r~~-~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~------~~~~  106 (310)
                      ++++.+.++|++.| -|. |..       +    ..|+. .|......++.++++|+..++|++.....+      ...+
T Consensus        20 ~~~~~l~~~Gad~i-ElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F   98 (250)
T PLN02591         20 EALRLLDACGADVI-ELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKF   98 (250)
T ss_pred             HHHHHHHHCCCCEE-EECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHH
Confidence            67999999999987 443 211       1    11111 133333447778888877889977654443      2246


Q ss_pred             HHHHHHcCCCeeeecCCCChh---HHHHHHHhcCCCCcEEeecCCHH-HHHHHHHhCCCEEEEecC-CCCCchHHHHHHH
Q 037779          107 AQILEAIGVDYVDESEVLTPA---DEENHINKHNFRVPFVCGCRNLG-ESLRRIREGAAMIRTKGE-AGTGNIVEAVRHV  181 (310)
Q Consensus       107 ~~~~~~aGad~v~~~~~~~~~---~~~~~~~~~~~~l~v~~~v~t~~-ea~~a~~~Gad~I~v~g~-~~~~~~~~~~~~~  181 (310)
                      ++.+.++|+|++++++. +++   ++.+.+++++.....++..+|.+ .+++..+....+|..-+. +-||.-       
T Consensus        99 ~~~~~~aGv~GviipDL-P~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~-------  170 (250)
T PLN02591         99 MATIKEAGVHGLVVPDL-PLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGAR-------  170 (250)
T ss_pred             HHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCC-------
Confidence            78899999999998765 444   34444555666666666555544 455555666667754322 112210       


Q ss_pred             HHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          182 RSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       182 ~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                                ..+.           ....+.++.+++..++||  ++..||++++|++++.+.|||||+|||+|++
T Consensus       171 ----------~~~~-----------~~~~~~i~~vk~~~~~Pv--~vGFGI~~~e~v~~~~~~GADGvIVGSalVk  223 (250)
T PLN02591        171 ----------ASVS-----------GRVESLLQELKEVTDKPV--AVGFGISKPEHAKQIAGWGADGVIVGSAMVK  223 (250)
T ss_pred             ----------cCCc-----------hhHHHHHHHHHhcCCCce--EEeCCCCCHHHHHHHHhcCCCEEEECHHHHH
Confidence                      0000           112456788888778999  4599999999999999999999999999987

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=99.34  E-value=2.6e-11  Score=109.17  Aligned_cols=184  Identities=24%  Similarity=0.266  Sum_probs=109.4

Q ss_pred             CCH-HHHHHHHHcCCcEEEecc-cccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeee
Q 037779           43 VTP-EQARIAEEAGACAVMALE-RVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE  120 (310)
Q Consensus        43 ~~~-~~a~~~~~~Ga~~I~~l~-~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~  120 (310)
                      .++ +.++.+.++|+++++..- .++.-.+.+.|+     ...+..++..+.+++..++.......++.+.+.||+.+..
T Consensus        21 ~d~~~~~~~~~~~g~~av~v~~~~~~~~~~~~~~~-----~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~Ga~~v~~   95 (235)
T cd00958          21 EDPEETVKLAAEGGADAVALTKGIARAYGREYAGD-----IPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRLGADAVGV   95 (235)
T ss_pred             cCHHHHHHHHHhcCCCEEEeChHHHHhcccccCCC-----CcEEEEECCCCCCCCCCCCchhhhcCHHHHHHCCCCEEEE
Confidence            454 689999999999995430 000000011111     1222222222333332222222234567788899998752


Q ss_pred             c-C--CCChhHHH---HHHHh--cCCCCcEEeecCC----------HHHHH----HHHHhCCCEEEEecCCCCCchHHHH
Q 037779          121 S-E--VLTPADEE---NHINK--HNFRVPFVCGCRN----------LGESL----RRIREGAAMIRTKGEAGTGNIVEAV  178 (310)
Q Consensus       121 ~-~--~~~~~~~~---~~~~~--~~~~l~v~~~v~t----------~~ea~----~a~~~Gad~I~v~g~~~~~~~~~~~  178 (310)
                      . .  ..+..+..   ..+.+  +..+++++++++.          .++..    .+.+.|+|||++..   ++      
T Consensus        96 ~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~---~~------  166 (235)
T cd00958          96 TVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKY---TG------  166 (235)
T ss_pred             EEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEecC---CC------
Confidence            1 1  11112222   22221  3467888887643          34433    36788999999851   11      


Q ss_pred             HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCC--CCH----HHHHHHHHcCCCEEEEc
Q 037779          179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGV--ATP----ADAAMMMQLGCDGVFVG  252 (310)
Q Consensus       179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI--~t~----~di~~~~~~GadgV~VG  252 (310)
                                                    +.+.++.+.+..++||+  +.|||  .|+    +++.+++++|++||.+|
T Consensus       167 ------------------------------~~~~~~~i~~~~~~pvv--~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg  214 (235)
T cd00958         167 ------------------------------DAESFKEVVEGCPVPVV--IAGGPKKDSEEEFLKMVYDAMEAGAAGVAVG  214 (235)
T ss_pred             ------------------------------CHHHHHHHHhcCCCCEE--EeCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence                                          23445666666678985  45777  455    44899999999999999


Q ss_pred             cccccCCCHHHHHHHHHHHH
Q 037779          253 SGVFKSGDPVRRARAIVQAV  272 (310)
Q Consensus       253 sai~~~~dp~~~~~~~~~~~  272 (310)
                      +.|++++||.+.+++|+..+
T Consensus       215 ~~i~~~~dp~~~~~~~~~~~  234 (235)
T cd00958         215 RNIFQRPDPVAMLRAISAVV  234 (235)
T ss_pred             hhhhcCCCHHHHHHHHHHHh
Confidence            99999999999999998765

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=99.32  E-value=1.9e-10  Score=112.63  Aligned_cols=183  Identities=22%  Similarity=0.283  Sum_probs=125.3

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecc----ccchHHHHHHHHcCCCeeeec
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKAR----IGHFVEAQILEAIGVDYVDES  121 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~----i~~~~~~~~~~~aGad~v~~~  121 (310)
                      +.++.+.++|+++|..-  .|. ...++       .+.++++++....+.++.|.    ++ ...++.+.++|||+++.+
T Consensus        20 ~~~~~~~~~Gv~~ie~g--~p~-~~~~~-------~~~i~~l~~~~~~~~ii~D~kl~d~g-~~~v~~a~~aGAdgV~v~   88 (430)
T PRK07028         20 EIAKEAVAGGADWIEAG--TPL-IKSEG-------MNAIRTLRKNFPDHTIVADMKTMDTG-AIEVEMAAKAGADIVCIL   88 (430)
T ss_pred             HHHHHHHhcCCcEEEeC--CHH-HHHhh-------HHHHHHHHHHCCCCEEEEEeeeccch-HHHHHHHHHcCCCEEEEe
Confidence            56888888999998421  111 11111       66788888776666766651    12 236788999999999853


Q ss_pred             CCC---ChhHHHHHHHhcCCCCcEEe---ecCC-HHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceeccccc
Q 037779          122 EVL---TPADEENHINKHNFRVPFVC---GCRN-LGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNM  194 (310)
Q Consensus       122 ~~~---~~~~~~~~~~~~~~~l~v~~---~v~t-~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~  194 (310)
                      ...   ++.+.++.++++  ++.++.   +++| .+.++.+.+.|+|+++++ +.+++.                   ..
T Consensus        89 g~~~~~~~~~~i~~a~~~--G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~-pg~~~~-------------------~~  146 (430)
T PRK07028         89 GLADDSTIEDAVRAARKY--GVRLMADLINVPDPVKRAVELEELGVDYINVH-VGIDQQ-------------------ML  146 (430)
T ss_pred             cCCChHHHHHHHHHHHHc--CCEEEEEecCCCCHHHHHHHHHhcCCCEEEEE-eccchh-------------------hc
Confidence            221   233555666654  444443   5555 455677788999999875 333210                   00


Q ss_pred             CchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          195 DDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       195 ~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                                 .....+.++.+++..++||+  +.||| +++++.+++++|++++++||+|++++||.+.++.|++.++.
T Consensus       147 -----------~~~~~~~l~~l~~~~~iPI~--a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~~  212 (430)
T PRK07028        147 -----------GKDPLELLKEVSEEVSIPIA--VAGGL-DAETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAIDS  212 (430)
T ss_pred             -----------CCChHHHHHHHHhhCCCcEE--EECCC-CHHHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHhc
Confidence                       01235667777765678994  56999 69999999999999999999999999999999999998877


Q ss_pred             C
Q 037779          275 Y  275 (310)
Q Consensus       275 ~  275 (310)
                      +
T Consensus       213 ~  213 (430)
T PRK07028        213 G  213 (430)
T ss_pred             c
Confidence            4

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=99.31  E-value=2e-10  Score=104.27  Aligned_cols=174  Identities=16%  Similarity=0.131  Sum_probs=110.3

Q ss_pred             HHHHHHHHcCCcEEEecc-cccchhhhcCCCCCC---------CChHHHHHHHhhcCcceEee----ccc-cchHHHHHH
Q 037779           46 EQARIAEEAGACAVMALE-RVPADIRAQGGVARM---------SDPQLIKQIKSSVTIPVMAK----ARI-GHFVEAQIL  110 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~~d~r~~~G~~~~---------~~~~~i~~i~~~~~lPv~~k----d~i-~~~~~~~~~  110 (310)
                      ++++.+.++ ++.+ .|| |++. +.. .|....         .-++.++++++.+++|+.+.    .+. +....++.+
T Consensus        22 ~~~~~l~~~-ad~i-Elgip~sd-p~a-dG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~   97 (244)
T PRK13125         22 EFIIGLVEL-VDIL-ELGIPPKY-PKY-DGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMA   97 (244)
T ss_pred             HHHHHHHhh-CCEE-EECCCCCC-CCC-CCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchhhhCHHHHHHHH
Confidence            678888887 9987 677 5442 211 111000         00468889998889998542    322 222346788


Q ss_pred             HHcCCCeeeecCCC-----ChhHHHHHHHhcCCCCcEEeecCC-HHHHHHHHHhCCCEE--EEecCCCCCchHHHHHHHH
Q 037779          111 EAIGVDYVDESEVL-----TPADEENHINKHNFRVPFVCGCRN-LGESLRRIREGAAMI--RTKGEAGTGNIVEAVRHVR  182 (310)
Q Consensus       111 ~~aGad~v~~~~~~-----~~~~~~~~~~~~~~~l~v~~~v~t-~~ea~~a~~~Gad~I--~v~g~~~~~~~~~~~~~~~  182 (310)
                      .++|+|.++.++..     ...++.+.+++++....+.+..+| .++++...+....++  ++++..+ ..+        
T Consensus        98 ~~~Gadgvii~dlp~e~~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~msv~~~~g-~~~--------  168 (244)
T PRK13125         98 RDVGADGVLFPDLLIDYPDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIYYGLRPATG-VPL--------  168 (244)
T ss_pred             HHcCCCEEEECCCCCCcHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEEEEeCCCCC-CCc--------
Confidence            99999999876431     233555666666666666666666 455666666665555  4443221 111        


Q ss_pred             HhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          183 SVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       183 ~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                                  .           ....+.++++++.. +.|+  +++|||++++++++++++|||++++||+|++
T Consensus       169 ------------~-----------~~~~~~i~~lr~~~~~~~i--~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~  219 (244)
T PRK13125        169 ------------P-----------VSVERNIKRVRNLVGNKYL--VVGFGLDSPEDARDALSAGADGVVVGTAFIE  219 (244)
T ss_pred             ------------h-----------HHHHHHHHHHHHhcCCCCE--EEeCCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence                        0           01133455555543 4687  5699999999999999999999999999997

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=99.29  E-value=8.7e-10  Score=97.06  Aligned_cols=157  Identities=11%  Similarity=0.144  Sum_probs=112.6

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC-cceEeeccccchHHHHHHHHcCCCeeeecCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT-IPVMAKARIGHFVEAQILEAIGVDYVDESEVL  124 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~-lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~~  124 (310)
                      +.++++.++|...+ .+       ....    ..-.+.++++++... +.|-+.. +.+.++++.+.++||+++..+.. 
T Consensus        24 ~~~~al~~~Gi~~i-Ei-------t~~t----~~a~~~i~~l~~~~~~~~vGAGT-Vl~~~~a~~a~~aGA~FivsP~~-   89 (204)
T TIGR01182        24 PLAKALIEGGLRVL-EV-------TLRT----PVALDAIRLLRKEVPDALIGAGT-VLNPEQLRQAVDAGAQFIVSPGL-   89 (204)
T ss_pred             HHHHHHHHcCCCEE-EE-------eCCC----ccHHHHHHHHHHHCCCCEEEEEe-CCCHHHHHHHHHcCCCEEECCCC-
Confidence            67999999999987 22       1111    111567788877653 3332222 22457889999999999975443 


Q ss_pred             ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCC-CCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779          125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEA-GTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA  203 (310)
Q Consensus       125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  203 (310)
                       .+++.+..++  .+++++.++.|+.|+..|.+.|+++++++... .+|                               
T Consensus        90 -~~~v~~~~~~--~~i~~iPG~~TptEi~~A~~~Ga~~vKlFPA~~~GG-------------------------------  135 (204)
T TIGR01182        90 -TPELAKHAQD--HGIPIIPGVATPSEIMLALELGITALKLFPAEVSGG-------------------------------  135 (204)
T ss_pred             -CHHHHHHHHH--cCCcEECCCCCHHHHHHHHHCCCCEEEECCchhcCC-------------------------------
Confidence             4577777765  46899999999999999999999999998321 111                               


Q ss_pred             ccCCCcHHHHHHHHh-cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          204 KNIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       204 ~~~~~~~~l~~~i~~-~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                            ...++.++. ..++|+  ++.||| +++++.+++++|+.++.+||.++..+
T Consensus       136 ------~~yikal~~plp~i~~--~ptGGV-~~~N~~~~l~aGa~~vg~Gs~L~~~~  183 (204)
T TIGR01182       136 ------VKMLKALAGPFPQVRF--CPTGGI-NLANVRDYLAAPNVACGGGSWLVPKD  183 (204)
T ss_pred             ------HHHHHHHhccCCCCcE--EecCCC-CHHHHHHHHhCCCEEEEEChhhcCch
Confidence                  123333433 246788  578999 59999999999999999999999744

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>PRK08005 epimerase; Validated

Probab=99.28  E-value=5.9e-10  Score=98.59  Aligned_cols=181  Identities=16%  Similarity=0.157  Sum_probs=124.4

Q ss_pred             HHHHHHHHcCCcEEE----ecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchH-HHHHHHHcCCCeeee
Q 037779           46 EQARIAEEAGACAVM----ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFV-EAQILEAIGVDYVDE  120 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~----~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~-~~~~~~~aGad~v~~  120 (310)
                      +.++.+.++|+++++    +.+++|. . .|+       ++.++.+++.+++|+-++-.+.+.+ .++.+.++|+|.|..
T Consensus        17 ~el~~l~~~g~d~lHiDvMDG~FVPN-~-tfG-------~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It~   87 (210)
T PRK08005         17 EALTALHDAPLGSLHLDIEDTSFINN-I-TFG-------MKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFI   87 (210)
T ss_pred             HHHHHHHHCCCCEEEEeccCCCcCCc-c-ccC-------HHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEEE
Confidence            679999999999973    2235553 1 344       8899999999999998888876544 457888899999875


Q ss_pred             c-C-CCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEe--cCCCCCchHHHHHHHHHhhcceecccccCc
Q 037779          121 S-E-VLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTK--GEAGTGNIVEAVRHVRSVMGDIRVLRNMDD  196 (310)
Q Consensus       121 ~-~-~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~--g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  196 (310)
                      + + ...+...++.+++++....+.+...|+-+...-.-.-.|+|.+.  .++++|-                  +.   
T Consensus        88 H~Ea~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ------------------~f---  146 (210)
T PRK08005         88 HAESVQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQ------------------QF---  146 (210)
T ss_pred             cccCccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCccc------------------ee---
Confidence            4 2 23456788888887766777777777666555444467776443  3444331                  00   


Q ss_pred             hhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 037779          197 DEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAI  268 (310)
Q Consensus       197 d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~  268 (310)
                               .....+.++++++. ....+  -+.||| +.+++.++.++|||.+++||++++++|+.+..+.+
T Consensus       147 ---------~~~~~~KI~~l~~~~~~~~I--~VDGGI-~~~~i~~l~~aGad~~V~GsaiF~~~d~~~~~~~~  207 (210)
T PRK08005        147 ---------IAAMCEKVSQSREHFPAAEC--WADGGI-TLRAARLLAAAGAQHLVIGRALFTTANYDVTLSQF  207 (210)
T ss_pred             ---------cHHHHHHHHHHHHhcccCCE--EEECCC-CHHHHHHHHHCCCCEEEEChHhhCCCCHHHHHHHH
Confidence                     01122333333332 12244  358999 59999999999999999999999988887776655

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=99.28  E-value=5.7e-11  Score=111.93  Aligned_cols=153  Identities=25%  Similarity=0.325  Sum_probs=106.7

Q ss_pred             HHHHHHHHcCCcEEEecc-cccc--hhhhcCCCCCCCChHHHHHH----HhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779           46 EQARIAEEAGACAVMALE-RVPA--DIRAQGGVARMSDPQLIKQI----KSSVTIPVMAKARIGHFVEAQILEAIGVDYV  118 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~~--d~r~~~G~~~~~~~~~i~~i----~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v  118 (310)
                      +.|+.+.+.|+++| ++| .||.  -.+...|+..+++++.+.++    ++.+++||.+|.+.|+..             
T Consensus        81 ~aa~~~~~~g~d~I-dlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~-------------  146 (321)
T PRK10415         81 DAARINVESGAQII-DINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAP-------------  146 (321)
T ss_pred             HHHHHHHHCCCCEE-EEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccC-------------
Confidence            34676778899998 999 5553  33444588889999987655    455678999998766310             


Q ss_pred             eecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchh
Q 037779          119 DESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDE  198 (310)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  198 (310)
                            +..+..                   +-++.+.+.|++.+.+++......                   +     
T Consensus       147 ------~~~~~~-------------------~~a~~le~~G~d~i~vh~rt~~~~-------------------~-----  177 (321)
T PRK10415        147 ------EHRNCV-------------------EIAQLAEDCGIQALTIHGRTRACL-------------------F-----  177 (321)
T ss_pred             ------CcchHH-------------------HHHHHHHHhCCCEEEEecCccccc-------------------c-----
Confidence                  001111                   112344567888888875421110                   0     


Q ss_pred             HHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHHHHHH
Q 037779          199 VFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVRRARAIV  269 (310)
Q Consensus       199 ~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~dp~~~~~~~~  269 (310)
                            .-..+++.++.+++..++||  |++|||.|++++.++++ .|+|+|++|++++..++.+...+.+.
T Consensus       178 ------~G~a~~~~i~~ik~~~~iPV--I~nGgI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~~~  241 (321)
T PRK10415        178 ------NGEAEYDSIRAVKQKVSIPV--IANGDITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYL  241 (321)
T ss_pred             ------CCCcChHHHHHHHHhcCCcE--EEeCCCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHHHHH
Confidence                  01236888999988888999  67999999999999997 69999999999999888766655443

>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA

Probab=99.28  E-value=2.1e-11  Score=114.28  Aligned_cols=154  Identities=27%  Similarity=0.427  Sum_probs=100.0

Q ss_pred             HHHHHHHHcCCcEEEecc---cccchhhhcCCCCCCCChHHHHH----HHhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779           46 EQARIAEEAGACAVMALE---RVPADIRAQGGVARMSDPQLIKQ----IKSSVTIPVMAKARIGHFVEAQILEAIGVDYV  118 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~---~~~~d~r~~~G~~~~~~~~~i~~----i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v  118 (310)
                      +.|+.+.+.|+++| +||   |.++-.+...|+.++++++.+.+    +++.+++||.+|.+++..+             
T Consensus        70 ~aa~~~~~~~~~~I-DlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~-------------  135 (309)
T PF01207_consen   70 EAAEIVAELGFDGI-DLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDD-------------  135 (309)
T ss_dssp             HHHHHHCCTT-SEE-EEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--------------
T ss_pred             HHHHhhhccCCcEE-eccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEeccccccc-------------
Confidence            44666666799999 999   66666655568899999998665    4566789999999987311             


Q ss_pred             eecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchh
Q 037779          119 DESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDE  198 (310)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  198 (310)
                            +..+..+                   -+....+.|++.+.+|++.....                   +     
T Consensus       136 ------~~~~~~~-------------------~~~~l~~~G~~~i~vH~Rt~~q~-------------------~-----  166 (309)
T PF01207_consen  136 ------SPEETIE-------------------FARILEDAGVSAITVHGRTRKQR-------------------Y-----  166 (309)
T ss_dssp             -------CHHHHH-------------------HHHHHHHTT--EEEEECS-TTCC-------------------C-----
T ss_pred             ------chhHHHH-------------------HHHHhhhcccceEEEecCchhhc-------------------C-----
Confidence                  1222222                   23355578999999997622110                   0     


Q ss_pred             HHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccCCCHHHHHHHHHH
Q 037779          199 VFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSGDPVRRARAIVQ  270 (310)
Q Consensus       199 ~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~~dp~~~~~~~~~  270 (310)
                            ....+|+.++.+++..++||  |++|||.|++++.++++. |+||||+|++.+..++.+.....+..
T Consensus       167 ------~~~a~w~~i~~i~~~~~ipv--i~NGdI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~~~~~~~~  231 (309)
T PF01207_consen  167 ------KGPADWEAIAEIKEALPIPV--IANGDIFSPEDAERMLEQTGADGVMIGRGALGNPWLFREIDQIKE  231 (309)
T ss_dssp             ------TS---HHHHHHCHHC-TSEE--EEESS--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHCHHHCHHH
T ss_pred             ------CcccchHHHHHHhhccccee--EEcCccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhhhhhhhcc
Confidence                  11457999999999888999  789999999999999975 99999999999999988764333333

Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=99.26  E-value=3.1e-10  Score=102.80  Aligned_cols=180  Identities=24%  Similarity=0.333  Sum_probs=121.8

Q ss_pred             HHHHHHHHcCCcEEEecc-cc-------cc----hhhhcC-CCCCCCChHHHHHHHhh-cCcceEeecccc------chH
Q 037779           46 EQARIAEEAGACAVMALE-RV-------PA----DIRAQG-GVARMSDPQLIKQIKSS-VTIPVMAKARIG------HFV  105 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~-------~~----d~r~~~-G~~~~~~~~~i~~i~~~-~~lPv~~kd~i~------~~~  105 (310)
                      +.++.+.++|++.| -|. |.       |+    ..|+.. |......++.++++++. .++|+......+      ...
T Consensus        35 e~i~~L~~~GaD~i-ELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~  113 (265)
T COG0159          35 EIIKTLVEAGADIL-ELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIFNYGIEK  113 (265)
T ss_pred             HHHHHHHhCCCCEE-EecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHHHhhHHH
Confidence            77999999999987 443 11       11    112222 44455667788899855 789998865443      224


Q ss_pred             HHHHHHHcCCCeeeecCCCC--hhHHHHHHHhcCCCCcEEeecCCHHHHHHHH-HhCCCEEEEecCC-CCCchHHHHHHH
Q 037779          106 EAQILEAIGVDYVDESEVLT--PADEENHINKHNFRVPFVCGCRNLGESLRRI-REGAAMIRTKGEA-GTGNIVEAVRHV  181 (310)
Q Consensus       106 ~~~~~~~aGad~v~~~~~~~--~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~-~~Gad~I~v~g~~-~~~~~~~~~~~~  181 (310)
                      +++.+.++|+|++++++...  ..++...+++++.....++..+|.++..+.+ +..-.++...+.. -||.        
T Consensus       114 F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~~GvTG~--------  185 (265)
T COG0159         114 FLRRAKEAGVDGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSRMGVTGA--------  185 (265)
T ss_pred             HHHHHHHcCCCEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEecccccCC--------
Confidence            67899999999999776521  2245556666777877778777776655444 4333455433221 1221        


Q ss_pred             HHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          182 RSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       182 ~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                                    +++      ......++++++++..++|+  .+..||+++++++++.+. ||||+|||+|++
T Consensus       186 --------------~~~------~~~~~~~~v~~vr~~~~~Pv--~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~  238 (265)
T COG0159         186 --------------RNP------VSADVKELVKRVRKYTDVPV--LVGFGISSPEQAAQVAEA-ADGVIVGSAIVK  238 (265)
T ss_pred             --------------Ccc------cchhHHHHHHHHHHhcCCCe--EEecCcCCHHHHHHHHHh-CCeEEEcHHHHH
Confidence                          000      00113678888888889999  569999999999999999 999999999988

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=99.25  E-value=4.2e-10  Score=102.80  Aligned_cols=180  Identities=26%  Similarity=0.299  Sum_probs=117.6

Q ss_pred             HHHHHHHHcCCcEEEecc-ccc-------chh----hhc-CCCCCCCChHHHHHHH-hhcCcceEeecccc------chH
Q 037779           46 EQARIAEEAGACAVMALE-RVP-------ADI----RAQ-GGVARMSDPQLIKQIK-SSVTIPVMAKARIG------HFV  105 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~-------~d~----r~~-~G~~~~~~~~~i~~i~-~~~~lPv~~kd~i~------~~~  105 (310)
                      +.++.+.++|++.| -+. |..       +-.    ++. +|......++.++++| +..++|+++....+      ...
T Consensus        30 ~~~~~l~~~Gad~i-ElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~  108 (258)
T PRK13111         30 EIIKALVEAGADII-ELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQYGVER  108 (258)
T ss_pred             HHHHHHHHCCCCEE-EECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHH
Confidence            67999999999987 443 221       111    111 1332223367778888 55789987654333      224


Q ss_pred             HHHHHHHcCCCeeeecCCCChhHH---HHHHHhcCCCCcEEeecCCH-HHHHHHHHhCCCEEEEecCC-CCCchHHHHHH
Q 037779          106 EAQILEAIGVDYVDESEVLTPADE---ENHINKHNFRVPFVCGCRNL-GESLRRIREGAAMIRTKGEA-GTGNIVEAVRH  180 (310)
Q Consensus       106 ~~~~~~~aGad~v~~~~~~~~~~~---~~~~~~~~~~l~v~~~v~t~-~ea~~a~~~Gad~I~v~g~~-~~~~~~~~~~~  180 (310)
                      .++.+.++|+|++++++. ++++.   .+.+++++.....++..+|. +.++...+....+|..-+.. .||.       
T Consensus       109 f~~~~~~aGvdGviipDL-p~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~-------  180 (258)
T PRK13111        109 FAADAAEAGVDGLIIPDL-PPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHASGFVYYVSRAGVTGA-------  180 (258)
T ss_pred             HHHHHHHcCCcEEEECCC-CHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCc-------
Confidence            678899999999998765 45543   44445566666666666664 45666667777777543221 2331       


Q ss_pred             HHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       181 ~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                                 .+.          ......+.++.+++..++|+  ++++||++++++.++.+. ||||+|||+|++.
T Consensus       181 -----------~~~----------~~~~~~~~i~~vk~~~~~pv--~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~~  234 (258)
T PRK13111        181 -----------RSA----------DAADLAELVARLKAHTDLPV--AVGFGISTPEQAAAIAAV-ADGVIVGSALVKI  234 (258)
T ss_pred             -----------ccC----------CCccHHHHHHHHHhcCCCcE--EEEcccCCHHHHHHHHHh-CCEEEEcHHHHHH
Confidence                       000          00123568888888778999  569999999999999986 9999999999874

>PRK08091 ribulose-phosphate 3-epimerase; Validated

Probab=99.25  E-value=1.5e-09  Score=96.97  Aligned_cols=185  Identities=15%  Similarity=0.040  Sum_probs=122.4

Q ss_pred             HHHHHHHHcCCcEEE----ecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccch-HHHHHHHHcCCCeeee
Q 037779           46 EQARIAEEAGACAVM----ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHF-VEAQILEAIGVDYVDE  120 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~----~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~-~~~~~~~~aGad~v~~  120 (310)
                      +..++++++|+++++    +.+++|. . .|+       +..++.+++  ++|+-++-.+.+. ..++.+.++|||.|..
T Consensus        29 ~el~~l~~~g~d~lHiDVMDG~FVPN-i-tfG-------p~~i~~i~~--~~~~DvHLMv~~P~~~i~~~~~aGad~It~   97 (228)
T PRK08091         29 ETLTTLSENQLRLLHFDIADGQFSPF-F-TVG-------AIAIKQFPT--HCFKDVHLMVRDQFEVAKACVAAGADIVTL   97 (228)
T ss_pred             HHHHHHHHCCCCEEEEeccCCCcCCc-c-ccC-------HHHHHHhCC--CCCEEEEeccCCHHHHHHHHHHhCCCEEEE
Confidence            689999999999973    2235553 2 343       788999973  7898888777654 3457888999999875


Q ss_pred             c-C-CCChhHHHHHHHhcCC--CCcEEeecCCHHHHHHHHHhCCCEEEEe--cCCCCCc--hHHHHHHHHHhhcceeccc
Q 037779          121 S-E-VLTPADEENHINKHNF--RVPFVCGCRNLGESLRRIREGAAMIRTK--GEAGTGN--IVEAVRHVRSVMGDIRVLR  192 (310)
Q Consensus       121 ~-~-~~~~~~~~~~~~~~~~--~l~v~~~v~t~~ea~~a~~~Gad~I~v~--g~~~~~~--~~~~~~~~~~~~~~~~~l~  192 (310)
                      + + ...+.+.++.+++.+.  ...+.....|+-+...-+-.-.|+|.+.  .|+++|-  +..+++.+           
T Consensus        98 H~Ea~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~PGfgGQ~f~~~~l~KI-----------  166 (228)
T PRK08091         98 QVEQTHDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDPRTGTKAPSDLILDRV-----------  166 (228)
T ss_pred             cccCcccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHH-----------
Confidence            4 2 2345677788888776  4556666666655554444457876432  3444331  11111111           


Q ss_pred             ccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 037779          193 NMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQA  271 (310)
Q Consensus       193 ~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~  271 (310)
                                       .++.+.+++. .++.+  -+.||| +.+++.++.++|||.+++||++++.+|+.+.++.++..
T Consensus       167 -----------------~~lr~~~~~~~~~~~I--eVDGGI-~~~ti~~l~~aGaD~~V~GSalF~~~d~~~~i~~l~~~  226 (228)
T PRK08091        167 -----------------IQVENRLGNRRVEKLI--SIDGSM-TLELASYLKQHQIDWVVSGSALFSQGELKTTLKEWKSS  226 (228)
T ss_pred             -----------------HHHHHHHHhcCCCceE--EEECCC-CHHHHHHHHHCCCCEEEEChhhhCCCCHHHHHHHHHHh
Confidence                             1222222222 12334  458999 59999999999999999999999988988888887764


Q ss_pred             H
Q 037779          272 V  272 (310)
Q Consensus       272 ~  272 (310)
                      +
T Consensus       227 ~  227 (228)
T PRK08091        227 L  227 (228)
T ss_pred             h
Confidence            3

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=99.25  E-value=2.1e-10  Score=107.64  Aligned_cols=150  Identities=25%  Similarity=0.321  Sum_probs=105.6

Q ss_pred             HHHHHHHHcCCcEEEecc---cccchhhhcCCCCCCCChHHHHHH----Hhhc--CcceEeeccccchHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALE---RVPADIRAQGGVARMSDPQLIKQI----KSSV--TIPVMAKARIGHFVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~---~~~~d~r~~~G~~~~~~~~~i~~i----~~~~--~lPv~~kd~i~~~~~~~~~~~aGad  116 (310)
                      +.|+.+.+.|+++| ++|   |.++-.+..+|+.++++++.+.+|    ++.+  ++||.+|.++++.            
T Consensus        79 ~aA~~~~~~g~d~I-diN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------------  145 (312)
T PRK10550         79 ENAARAVELGSWGV-DLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------------  145 (312)
T ss_pred             HHHHHHHHcCCCEE-EEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC------------
Confidence            45778888999998 899   555444444577788888876655    5555  4999999887621            


Q ss_pred             eeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCc
Q 037779          117 YVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDD  196 (310)
Q Consensus       117 ~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  196 (310)
                              ...+..                   +-+..+.+.|+|++.+++.....                   .+.  
T Consensus       146 --------~~~~~~-------------------~~a~~l~~~Gvd~i~Vh~Rt~~~-------------------~y~--  177 (312)
T PRK10550        146 --------SGERKF-------------------EIADAVQQAGATELVVHGRTKED-------------------GYR--  177 (312)
T ss_pred             --------CchHHH-------------------HHHHHHHhcCCCEEEECCCCCcc-------------------CCC--
Confidence                    001111                   12334456788888888542110                   000  


Q ss_pred             hhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHHH
Q 037779          197 DEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       197 d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~dp~~~~~  266 (310)
                              ....+|+.++.+++..++||  |++|||.|++++.++++ .|||+|++|++++..++.+..++
T Consensus       178 --------g~~~~~~~i~~ik~~~~iPV--i~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~  238 (312)
T PRK10550        178 --------AEHINWQAIGEIRQRLTIPV--IANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVK  238 (312)
T ss_pred             --------CCcccHHHHHHHHhhcCCcE--EEeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhh
Confidence                    01125788999999888999  67999999999999995 79999999999999888776543

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.24  E-value=8.4e-10  Score=106.17  Aligned_cols=125  Identities=14%  Similarity=0.191  Sum_probs=89.4

Q ss_pred             HHHHHHHHcCCCeeeec--C--CCChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEe-cCC--CCCchHH
Q 037779          105 VEAQILEAIGVDYVDES--E--VLTPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTK-GEA--GTGNIVE  176 (310)
Q Consensus       105 ~~~~~~~~aGad~v~~~--~--~~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~-g~~--~~~~~~~  176 (310)
                      +.++.+.++|+|.|.+.  +  .....+.++.++++.+++.+++ ++.|.++++.+.++|+|+|.+. |+.  +++.   
T Consensus       156 ~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr---  232 (404)
T PRK06843        156 ERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTR---  232 (404)
T ss_pred             HHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcce---
Confidence            57888999999998732  2  2334466777777667777766 7999999999999999999874 221  2211   


Q ss_pred             HHHHHHHhhcceecccccCchhHHhhhccCC-CcHHHH---HHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEc
Q 037779          177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKNIA-APYDLV---MQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG  252 (310)
Q Consensus       177 ~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~-~~~~l~---~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VG  252 (310)
                                   .+.            +.+ +....+   ..+.+..++||  ||+|||.++.|+.+++.+||++|++|
T Consensus       233 -------------~~~------------g~g~p~ltai~~v~~~~~~~~vpV--IAdGGI~~~~Di~KALalGA~aVmvG  285 (404)
T PRK06843        233 -------------IVA------------GVGVPQITAICDVYEVCKNTNICI--IADGGIRFSGDVVKAIAAGADSVMIG  285 (404)
T ss_pred             -------------eec------------CCCCChHHHHHHHHHHHhhcCCeE--EEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence                         110            111 123333   33333346898  78999999999999999999999999


Q ss_pred             cccccCC
Q 037779          253 SGVFKSG  259 (310)
Q Consensus       253 sai~~~~  259 (310)
                      ++|..++
T Consensus       286 s~~agt~  292 (404)
T PRK06843        286 NLFAGTK  292 (404)
T ss_pred             ceeeeee
Confidence            9999954

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional

Probab=99.24  E-value=6.1e-10  Score=100.07  Aligned_cols=186  Identities=14%  Similarity=0.174  Sum_probs=119.7

Q ss_pred             HHHHHHHHcCCcEEE----ecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccch-HHHHHHHHcCCCeee
Q 037779           46 EQARIAEEAGACAVM----ALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHF-VEAQILEAIGVDYVD  119 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~----~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~-~~~~~~~~aGad~v~  119 (310)
                      +.++.+.++|+++++    +.+++|. . .|+       ++.++.+++.+ ++|+-++..+.+. ..++.+.++|||.+.
T Consensus        23 ~~~~~l~~~~~~~~H~DimDg~fvpn-~-~~G-------~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~it   93 (228)
T PTZ00170         23 DEAQDVLSGGADWLHVDVMDGHFVPN-L-SFG-------PPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFT   93 (228)
T ss_pred             HHHHHHHHcCCCEEEEecccCccCCC-c-CcC-------HHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEE
Confidence            779999999999973    2224442 1 233       78999999887 8999888876543 345788889999987


Q ss_pred             ecCC--CC-hhHHHHHHHhcCCCCcEEeecCC-HHHHHHHHH-hCCCEE---EEecCCCCCchHHHHHHHHHhhcceecc
Q 037779          120 ESEV--LT-PADEENHINKHNFRVPFVCGCRN-LGESLRRIR-EGAAMI---RTKGEAGTGNIVEAVRHVRSVMGDIRVL  191 (310)
Q Consensus       120 ~~~~--~~-~~~~~~~~~~~~~~l~v~~~v~t-~~ea~~a~~-~Gad~I---~v~g~~~~~~~~~~~~~~~~~~~~~~~l  191 (310)
                      .+..  .. +...++.+++.+..+.+.+...| .+++...++ ...|+|   .++ +++++-                  
T Consensus        94 vH~ea~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~-pG~~gq------------------  154 (228)
T PTZ00170         94 FHIEATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVE-PGFGGQ------------------  154 (228)
T ss_pred             EeccCCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhhcc-cCCCCc------------------
Confidence            5422  12 44566666665433334334433 334443332 234655   233 222210                  


Q ss_pred             cccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 037779          192 RNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ  270 (310)
Q Consensus       192 ~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~  270 (310)
                      ..            .....+.++.+++. ....+  .+.||| +++++..+.++|+|.+++||+|++++||.+.++++++
T Consensus       155 ~~------------~~~~~~ki~~~~~~~~~~~I--~VdGGI-~~~ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~~  219 (228)
T PTZ00170        155 SF------------MHDMMPKVRELRKRYPHLNI--QVDGGI-NLETIDIAADAGANVIVAGSSIFKAKDRKQAIELLRE  219 (228)
T ss_pred             Ee------------cHHHHHHHHHHHHhcccCeE--EECCCC-CHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHH
Confidence            00            01123334444443 12344  468999 5999999999999999999999999999999999998


Q ss_pred             HHHc
Q 037779          271 AVTN  274 (310)
Q Consensus       271 ~~~~  274 (310)
                      .+++
T Consensus       220 ~~~~  223 (228)
T PTZ00170        220 SVQK  223 (228)
T ss_pred             HHHH
Confidence            8764

>PRK09722 allulose-6-phosphate 3-epimerase; Provisional

Probab=99.24  E-value=2.7e-09  Score=95.66  Aligned_cols=189  Identities=17%  Similarity=0.181  Sum_probs=126.0

Q ss_pred             HHHHHHHHcCCcEEE----ecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchH-HHHHHHHcCCCeeee
Q 037779           46 EQARIAEEAGACAVM----ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFV-EAQILEAIGVDYVDE  120 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~----~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~-~~~~~~~aGad~v~~  120 (310)
                      +.++.+.+ |+++++    +.+++|. . .|+       +..++.+|+.+++|+-+.-.+.+.+ .++.+.++|||.|..
T Consensus        19 ~el~~l~~-g~d~lH~DiMDG~FVPN-~-tfg-------~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~   88 (229)
T PRK09722         19 EQIEFLNS-KADYFHIDIMDGHFVPN-L-TLS-------PFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITL   88 (229)
T ss_pred             HHHHHHHh-CCCEEEEecccCccCCC-c-ccC-------HHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEE
Confidence            56788877 899973    2335553 2 343       7899999998999998888876543 457888899999875


Q ss_pred             c-CC--CChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEe--cCCCCC--chHHHHHHHHHhhcceecccc
Q 037779          121 S-EV--LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTK--GEAGTG--NIVEAVRHVRSVMGDIRVLRN  193 (310)
Q Consensus       121 ~-~~--~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~--g~~~~~--~~~~~~~~~~~~~~~~~~l~~  193 (310)
                      + +.  ..+...++.+++++....+.+...|+-+...-+-.-.|+|.+.  .++++|  .+.++++.+            
T Consensus        89 H~Ea~~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI------------  156 (229)
T PRK09722         89 HPETINGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQPFIPEMLDKI------------  156 (229)
T ss_pred             CccCCcchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcchhccHHHHHHH------------
Confidence            4 32  2466778888887776777777777766655544467876432  344433  111221111            


Q ss_pred             cCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc-cccc-CCCHHHHHHHHHHH
Q 037779          194 MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS-GVFK-SGDPVRRARAIVQA  271 (310)
Q Consensus       194 ~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs-ai~~-~~dp~~~~~~~~~~  271 (310)
                                      .++.+.+.+ ....+.+-+.||| +.+++.++.++|||.+++|| ++++ .+|+.+.++.+++.
T Consensus       157 ----------------~~lr~~~~~-~~~~~~IeVDGGI-~~~~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~l~~~  218 (229)
T PRK09722        157 ----------------AELKALRER-NGLEYLIEVDGSC-NQKTYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDIMTAQ  218 (229)
T ss_pred             ----------------HHHHHHHHh-cCCCeEEEEECCC-CHHHHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHHHHHH
Confidence                            122222222 2223323568999 59999999999999999995 5987 57888888888876


Q ss_pred             HHc
Q 037779          272 VTN  274 (310)
Q Consensus       272 ~~~  274 (310)
                      +++
T Consensus       219 ~~~  221 (229)
T PRK09722        219 IEA  221 (229)
T ss_pred             HHH
Confidence            553

>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

Probab=99.23  E-value=1.9e-09  Score=94.48  Aligned_cols=162  Identities=18%  Similarity=0.258  Sum_probs=113.4

Q ss_pred             hHHHHHHHhhc-CcceEeeccccc--hHHHHHHHHcCCCeeeecCCCChhHHHHHHHh-cCCCCcEEee---cCCHHHHH
Q 037779           81 PQLIKQIKSSV-TIPVMAKARIGH--FVEAQILEAIGVDYVDESEVLTPADEENHINK-HNFRVPFVCG---CRNLGESL  153 (310)
Q Consensus        81 ~~~i~~i~~~~-~lPv~~kd~i~~--~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~-~~~~l~v~~~---v~t~~ea~  153 (310)
                      .+.++.+|+.. +.++++....-+  .-+++.++++|||.+.+.-.-+...+.+.++. +..+..+.++   +.|+++..
T Consensus        44 ~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~  123 (217)
T COG0269          44 MRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTVLGAADDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRA  123 (217)
T ss_pred             HHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEecCCHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHH
Confidence            57888888875 677777544421  24778999999999874322233333333333 3355655554   56778777


Q ss_pred             HHHH-hCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCC--CCEEEEccC
Q 037779          154 RRIR-EGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGR--LPVVHFAAG  230 (310)
Q Consensus       154 ~a~~-~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~--iPVv~ia~G  230 (310)
                      +=++ +|+|++.+|..                    ++...          .+....++.+..+++..+  .+|  -++|
T Consensus       124 ~~l~~~gvd~~~~H~g--------------------~D~q~----------~G~~~~~~~l~~ik~~~~~g~~v--AVaG  171 (217)
T COG0269         124 KWLKELGVDQVILHRG--------------------RDAQA----------AGKSWGEDDLEKIKKLSDLGAKV--AVAG  171 (217)
T ss_pred             HHHHHhCCCEEEEEec--------------------ccHhh----------cCCCccHHHHHHHHHhhccCceE--EEec
Confidence            6666 99999999821                    01110          122334667777777544  455  4589


Q ss_pred             CCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcC
Q 037779          231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY  275 (310)
Q Consensus       231 GI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~  275 (310)
                      || +++++..+...|++.|+||++|+++.||.+.+++|++.+..+
T Consensus       172 GI-~~~~i~~~~~~~~~ivIvGraIt~a~dp~~~a~~~~~~i~~~  215 (217)
T COG0269         172 GI-TPEDIPLFKGIGADIVIVGRAITGAKDPAEAARKFKEEIDKI  215 (217)
T ss_pred             CC-CHHHHHHHhcCCCCEEEECchhcCCCCHHHHHHHHHHHHhcc
Confidence            99 699999999999999999999999999999999999998754

>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS)

Probab=99.22  E-value=8.3e-10  Score=103.18  Aligned_cols=182  Identities=16%  Similarity=0.175  Sum_probs=123.8

Q ss_pred             CccccCCC-HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhh-cCcceEeeccc--cc---hHHHHH
Q 037779           37 GVIMDVVT-PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSS-VTIPVMAKARI--GH---FVEAQI  109 (310)
Q Consensus        37 g~i~~~~~-~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~-~~lPv~~kd~i--~~---~~~~~~  109 (310)
                      |.|..+.+ +++|.+..++|.-.+.-+...+.+.          .-+.|+++++. ++.|+-++...  .+   .+.++.
T Consensus         8 gpM~~vs~~~~LaaAVS~AGgLG~la~~~~~~e~----------l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~v   77 (320)
T cd04743           8 GPMTRVSDVAEFAVAVAEGGGLPFIALALMRGEQ----------VKALLEETAELLGDKPWGVGILGFVDTELRAAQLAV   77 (320)
T ss_pred             CCcCCCCCcHHHHHHHHhCCccccCCCCCCCHHH----------HHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHH
Confidence            66777777 8999999999988763221111110          02355667774 68898887532  11   246678


Q ss_pred             HHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhccee
Q 037779          110 LEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIR  189 (310)
Q Consensus       110 ~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~  189 (310)
                      +.+.++..|..... .|.. .+.++.  .|+.++..+.|+.+++++.+.|+|.+.+.|...+||.-              
T Consensus        78 i~e~~v~~V~~~~G-~P~~-~~~lk~--~Gi~v~~~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~G--------------  139 (320)
T cd04743          78 VRAIKPTFALIAGG-RPDQ-ARALEA--IGISTYLHVPSPGLLKQFLENGARKFIFEGRECGGHVG--------------  139 (320)
T ss_pred             HHhcCCcEEEEcCC-ChHH-HHHHHH--CCCEEEEEeCCHHHHHHHHHcCCCEEEEecCcCcCCCC--------------
Confidence            88899999875433 3444 455654  57899999999999999999999999998886666521              


Q ss_pred             cccccCchhHHhhhccCCCcHHHHHHHHh------cCCCCEEEEccCCCCCHHHHHHHHHcCC--------CEEEEcccc
Q 037779          190 VLRNMDDDEVFTFAKNIAAPYDLVMQTKQ------LGRLPVVHFAAGGVATPADAAMMMQLGC--------DGVFVGSGV  255 (310)
Q Consensus       190 ~l~~~~~d~~~~~~~~~~~~~~l~~~i~~------~~~iPVv~ia~GGI~t~~di~~~~~~Ga--------dgV~VGsai  255 (310)
                      .++++.          +  -.+++..+..      ..++||  |++|||.+...+..++.+||        +||.+||+|
T Consensus       140 ~~~t~~----------L--~~~v~~~l~~~~~~~~~~~iPV--iAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrF  205 (320)
T cd04743         140 PRSSFV----------L--WESAIDALLAANGPDKAGKIHL--LFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAY  205 (320)
T ss_pred             CCCchh----------h--HHHHHHHHHHhhcccccCCccE--EEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHH
Confidence            011110          0  0112222211      126899  78999999999999999988        899999999


Q ss_pred             ccCCC
Q 037779          256 FKSGD  260 (310)
Q Consensus       256 ~~~~d  260 (310)
                      .-++.
T Consensus       206 l~t~E  210 (320)
T cd04743         206 LFTEE  210 (320)
T ss_pred             hcchh
Confidence            98654

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>TIGR00742 yjbN tRNA dihydrouridine synthase A

Probab=99.22  E-value=3.3e-10  Score=106.51  Aligned_cols=159  Identities=21%  Similarity=0.244  Sum_probs=106.1

Q ss_pred             HHHHHHHHcCCcEEEecc-ccc--chhhhcCCCCCCCChHHHHHH----HhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779           46 EQARIAEEAGACAVMALE-RVP--ADIRAQGGVARMSDPQLIKQI----KSSVTIPVMAKARIGHFVEAQILEAIGVDYV  118 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~--~d~r~~~G~~~~~~~~~i~~i----~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v  118 (310)
                      +.|+.+.+.|+++| +|| .||  +-.+...|+.++.+++.+.++    ++.+++||++|.+++..+             
T Consensus        71 ~aA~~~~~~g~d~I-DlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~-------------  136 (318)
T TIGR00742        71 KCAKIAEKRGYDEI-NLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDP-------------  136 (318)
T ss_pred             HHHHHHHhCCCCEE-EEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCC-------------
Confidence            55777888899998 999 444  333333488888898876654    556689999999886311             


Q ss_pred             eecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCC--CCchHHHHHHHHHhhcceecccccCc
Q 037779          119 DESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAG--TGNIVEAVRHVRSVMGDIRVLRNMDD  196 (310)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~  196 (310)
                          ..+..+..                   +-++.+.+.|++.+.++|+..  .+.                  .... 
T Consensus       137 ----~~~~~~~~-------------------~~~~~l~~~G~~~itvHgRt~~~qg~------------------sg~~-  174 (318)
T TIGR00742       137 ----LDSYEFLC-------------------DFVEIVSGKGCQNFIVHARKAWLSGL------------------SPKE-  174 (318)
T ss_pred             ----cchHHHHH-------------------HHHHHHHHcCCCEEEEeCCchhhcCC------------------Cccc-
Confidence                00111111                   123344567889998886521  100                  0000 


Q ss_pred             hhHHhhhccC-CCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 037779          197 DEVFTFAKNI-AAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV  269 (310)
Q Consensus       197 d~~~~~~~~~-~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~  269 (310)
                      +      +.. ...|+.+..+++.. ++||  |++|||.|++|+.+++. |||||++|++++..++.+..++.+.
T Consensus       175 ~------~~~~~~~~~~i~~vk~~~~~ipV--i~NGdI~s~~da~~~l~-g~dgVMigRgal~nP~if~~~~~~l  240 (318)
T TIGR00742       175 N------REIPPLRYERVYQLKKDFPHLTI--EINGGIKNSEQIKQHLS-HVDGVMVGREAYENPYLLANVDREI  240 (318)
T ss_pred             c------ccCCchhHHHHHHHHHhCCCCcE--EEECCcCCHHHHHHHHh-CCCEEEECHHHHhCCHHHHHHHHHh
Confidence            0      001 12577788888765 7999  67999999999999886 9999999999999888776665543

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=99.21  E-value=8.6e-10  Score=103.57  Aligned_cols=176  Identities=18%  Similarity=0.206  Sum_probs=115.4

Q ss_pred             CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHH-HHhhcCcceEeecccc----chHHHHHHHHcCC-
Q 037779           42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQ-IKSSVTIPVMAKARIG----HFVEAQILEAIGV-  115 (310)
Q Consensus        42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~-i~~~~~lPv~~kd~i~----~~~~~~~~~~aGa-  115 (310)
                      ..+.++|+.+.+.|.-.+ .+       | +.       ++...+ +++.-...++++..++    ..+++..+.++|+ 
T Consensus        48 ~iN~~LA~~a~~~G~~~~-~~-------k-~~-------~e~~~~~~r~~~~~~l~v~~~vg~~~~~~~~~~~Lv~ag~~  111 (326)
T PRK05458         48 IIDEKIAEWLAENGYFYI-MH-------R-FD-------PEARIPFIKDMHEQGLIASISVGVKDDEYDFVDQLAAEGLT  111 (326)
T ss_pred             hhHHHHHHHHHHcCCEEE-Ee-------c-CC-------HHHHHHHHHhccccccEEEEEecCCHHHHHHHHHHHhcCCC
Confidence            445688999999888765 22       2 11       333222 2322222334544443    2367778888855 


Q ss_pred             -Ceeeec----CCCChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhccee
Q 037779          116 -DYVDES----EVLTPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIR  189 (310)
Q Consensus       116 -d~v~~~----~~~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~  189 (310)
                       |.|.++    +.....++++.++++.+++++++ ++.|.++++.+.++|+|++.+.+..++..                
T Consensus       112 ~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~----------------  175 (326)
T PRK05458        112 PEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVC----------------  175 (326)
T ss_pred             CCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCccc----------------
Confidence             998742    22234567778877777788999 59999999999999999998763222110                


Q ss_pred             cccccCchhHHhhhccCCCcHH--HHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          190 VLRNMDDDEVFTFAKNIAAPYD--LVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       190 ~l~~~~~d~~~~~~~~~~~~~~--l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                       ......       ..-.++|.  .+..+.+..++||  |++|||.++.|+.+++.+||++|++|++|.+..
T Consensus       176 -~t~~~~-------g~~~~~w~l~ai~~~~~~~~ipV--IAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~  237 (326)
T PRK05458        176 -ITKIKT-------GFGTGGWQLAALRWCAKAARKPI--IADGGIRTHGDIAKSIRFGATMVMIGSLFAGHE  237 (326)
T ss_pred             -cccccc-------CCCCCccHHHHHHHHHHHcCCCE--EEeCCCCCHHHHHHHHHhCCCEEEechhhcCCc
Confidence             000000       00122344  3666666667899  789999999999999999999999999999654

>PRK14057 epimerase; Provisional

Probab=99.21  E-value=4.3e-09  Score=95.23  Aligned_cols=187  Identities=13%  Similarity=0.079  Sum_probs=123.3

Q ss_pred             HHHHHHHHcCCcEEE----ecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchH-HHHHHHHcCCCeeee
Q 037779           46 EQARIAEEAGACAVM----ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFV-EAQILEAIGVDYVDE  120 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~----~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~-~~~~~~~aGad~v~~  120 (310)
                      +.++.++++|+++++    +.+++|. . .|+       ++.++.+++  ++|+-++-.+.+.+ .++.+.++|||.|..
T Consensus        36 ~el~~l~~~g~d~lHiDVMDG~FVPN-i-tfG-------p~~i~~i~~--~~p~DvHLMV~~P~~~i~~~~~aGad~It~  104 (254)
T PRK14057         36 RYLQQLEALNQPLLHLDLMDGQFCPQ-F-TVG-------PWAVGQLPQ--TFIKDVHLMVADQWTAAQACVKAGAHCITL  104 (254)
T ss_pred             HHHHHHHHCCCCEEEEeccCCccCCc-c-ccC-------HHHHHHhcc--CCCeeEEeeeCCHHHHHHHHHHhCCCEEEE
Confidence            679999999999973    2335553 2 343       788999976  68888887776543 457888999999874


Q ss_pred             c-C-CCChhHHHHHHHhcCC---------CCcEEeecCCHHHHHHHHHhCCCEEEEe--cCCCCC--chHHHHHHHHHhh
Q 037779          121 S-E-VLTPADEENHINKHNF---------RVPFVCGCRNLGESLRRIREGAAMIRTK--GEAGTG--NIVEAVRHVRSVM  185 (310)
Q Consensus       121 ~-~-~~~~~~~~~~~~~~~~---------~l~v~~~v~t~~ea~~a~~~Gad~I~v~--g~~~~~--~~~~~~~~~~~~~  185 (310)
                      + + ...+...++.+++++.         ...+.....|+-+...-.-.-.|+|.+.  .|+++|  .+.++++.+    
T Consensus       105 H~Ea~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VLvMtV~PGfgGQ~Fi~~~l~KI----  180 (254)
T PRK14057        105 QAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKMRSSDLHERV----  180 (254)
T ss_pred             eeccccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCEEEEEEECCCCCchhccHHHHHHH----
Confidence            4 2 2345677778877654         2455556667665555444457876432  344433  111121111    


Q ss_pred             cceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHH
Q 037779          186 GDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRR  264 (310)
Q Consensus       186 ~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~  264 (310)
                                              .++.+.+.+. .++.+  -+.||| +.+++.++.++|||.+++||++++.+|+.+.
T Consensus       181 ------------------------~~lr~~~~~~~~~~~I--eVDGGI-~~~ti~~l~~aGad~~V~GSalF~~~d~~~~  233 (254)
T PRK14057        181 ------------------------AQLLCLLGDKREGKII--VIDGSL-TQDQLPSLIAQGIDRVVSGSALFRDDRLVEN  233 (254)
T ss_pred             ------------------------HHHHHHHHhcCCCceE--EEECCC-CHHHHHHHHHCCCCEEEEChHhhCCCCHHHH
Confidence                                    1222222232 12334  468999 5999999999999999999999998899888


Q ss_pred             HHHHHHHHHc
Q 037779          265 ARAIVQAVTN  274 (310)
Q Consensus       265 ~~~~~~~~~~  274 (310)
                      ++.+++.+..
T Consensus       234 i~~l~~~~~~  243 (254)
T PRK14057        234 TRSWRAMFKV  243 (254)
T ss_pred             HHHHHHHHhh
Confidence            8888766543

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=99.20  E-value=1.1e-09  Score=103.29  Aligned_cols=184  Identities=18%  Similarity=0.218  Sum_probs=113.8

Q ss_pred             CccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCC
Q 037779           37 GVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVD  116 (310)
Q Consensus        37 g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad  116 (310)
                      +.|..+.+++++.++.++|.-++...+ .+.+.          ..+.+++++....+...+...-...+.++.+.++|++
T Consensus        40 apM~~vt~~~ma~ava~~GglGvi~~~-~~~~~----------~~~~i~~vk~~l~v~~~~~~~~~~~~~~~~l~eagv~  108 (325)
T cd00381          40 APMDTVTESEMAIAMARLGGIGVIHRN-MSIEE----------QAEEVRKVKGRLLVGAAVGTREDDKERAEALVEAGVD  108 (325)
T ss_pred             cCCCcCCcHHHHHHHHHCCCEEEEeCC-CCHHH----------HHHHHHHhccCceEEEecCCChhHHHHHHHHHhcCCC
Confidence            445567778999999999987762211 11000          0223334432211111111111123567788889999


Q ss_pred             eeeec--CC--CChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEe-cCC--CCCchHHHHHHHHHhhcce
Q 037779          117 YVDES--EV--LTPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTK-GEA--GTGNIVEAVRHVRSVMGDI  188 (310)
Q Consensus       117 ~v~~~--~~--~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~-g~~--~~~~~~~~~~~~~~~~~~~  188 (310)
                      .|.++  ..  ....+.++.++++.+++++++ .+.|.++++.+.+.|+|+|.+. ++.  +++.               
T Consensus       109 ~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~---------------  173 (325)
T cd00381         109 VIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTR---------------  173 (325)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccc---------------
Confidence            98632  22  123456666766555677776 6899999999999999999985 221  1110               


Q ss_pred             ecccccCchhHHhhhccCCCcHHHHHHHHhc---CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779          189 RVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD  260 (310)
Q Consensus       189 ~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~---~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d  260 (310)
                       .....           -.+.+..+..+.+.   .++||  |++|||.++.++.+++++||++|++||.|..++.
T Consensus       174 -~~~g~-----------g~p~~~~i~~v~~~~~~~~vpV--IA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~E  234 (325)
T cd00381         174 -IVTGV-----------GVPQATAVADVAAAARDYGVPV--IADGGIRTSGDIVKALAAGADAVMLGSLLAGTDE  234 (325)
T ss_pred             -eeCCC-----------CCCHHHHHHHHHHHHhhcCCcE--EecCCCCCHHHHHHHHHcCCCEEEecchhccccc
Confidence             00000           01234444444443   25899  7899999999999999999999999999998653

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]

Probab=99.19  E-value=5e-10  Score=105.94  Aligned_cols=197  Identities=24%  Similarity=0.321  Sum_probs=135.0

Q ss_pred             CccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccc---------------
Q 037779           37 GVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARI---------------  101 (310)
Q Consensus        37 g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i---------------  101 (310)
                      |-|-....+++|.+..++|.-++.-.+..+.+          ..-+.+++++..++.|...+.|.               
T Consensus        20 ~gM~~vs~~~LA~Avs~aGglG~ia~~~~~~e----------~l~~~i~~~~~~~~~p~~~~~f~~~~~~v~~~~l~~~~   89 (336)
T COG2070          20 GGMAGVSTPELAAAVSNAGGLGIIASGGLPAE----------QLRAEIRKIRALTDKPFVANNFGSAPAPVNVNILVARR   89 (336)
T ss_pred             CCccccCcHHHHHHHhccCCccccccccCCHH----------HHHHHHHHHHHhcCCcchhcccccccccchhheecccc
Confidence            44444777999999999998875222111111          11456778888887773322221               


Q ss_pred             c-chHHHHHHHH-cCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHH
Q 037779          102 G-HFVEAQILEA-IGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVR  179 (310)
Q Consensus       102 ~-~~~~~~~~~~-aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~  179 (310)
                      . ..+..+.+.. +|...+..+...++...++.++.  .+..++..+.+..+++++.+.|+|.+...|...+||.     
T Consensus        90 ~~~~~~~~~ii~~~~vpvv~~~~g~~~~~~i~~~~~--~g~~v~~~v~~~~~A~~~~~~G~d~vI~~g~eAGGH~-----  162 (336)
T COG2070          90 NAAEAGVDAIIEGAGVPVVSTSFGAPPAEFVARLKA--AGIKVIHSVITVREALKAERAGADAVIAQGAEAGGHR-----  162 (336)
T ss_pred             cchHHhhhhHHhcCCCCEEeccCCCCcHHHHHHHHH--cCCeEEEEeCCHHHHHHHHhCCCCEEEecCCcCCCcC-----
Confidence            1 1123344444 48888765555567888888876  5688999999999999999999999988877555541     


Q ss_pred             HHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCC-CCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          180 HVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGR-LPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       180 ~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~-iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                                  .. ..        .......|++++.+..+ +||  |++|||.+.+++..++.+||++|.+||+|..+
T Consensus       163 ------------g~-~~--------~~~~t~~Lv~ev~~~~~~iPV--iAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~t  219 (336)
T COG2070         163 ------------GG-VD--------LEVSTFALVPEVVDAVDGIPV--IAAGGIADGRGIAAALALGADGVQMGTRFLAT  219 (336)
T ss_pred             ------------CC-CC--------CCccHHHHHHHHHHHhcCCCE--EEecCccChHHHHHHHHhccHHHHhhhhhhcc
Confidence                        00 00        01224778899988878 999  78999999999999999999999999999987


Q ss_pred             CCHHHHHHHHHHHHHc
Q 037779          259 GDPVRRARAIVQAVTN  274 (310)
Q Consensus       259 ~dp~~~~~~~~~~~~~  274 (310)
                      ..- .....+++.+.+
T Consensus       220 ~Ea-~a~~~~K~~l~~  234 (336)
T COG2070         220 KEA-DASDAYKQALLQ  234 (336)
T ss_pred             ccc-CCCHHHHHHHhc
Confidence            531 112444444443

>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=99.18  E-value=8.2e-10  Score=103.05  Aligned_cols=171  Identities=18%  Similarity=0.323  Sum_probs=119.2

Q ss_pred             ccceeeecCCccccCCCH----HHHHHHHHcCCcEEEecc-cccchhhhc--CCCCCCCChHHHHHH----HhhcCcceE
Q 037779           28 VGLAQMLRGGVIMDVVTP----EQARIAEEAGACAVMALE-RVPADIRAQ--GGVARMSDPQLIKQI----KSSVTIPVM   96 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~~~~----~~a~~~~~~Ga~~I~~l~-~~~~d~r~~--~G~~~~~~~~~i~~i----~~~~~lPv~   96 (310)
                      .|+++-+.+      .|+    +.|+..... +|+| ++| .||.-....  .|+.++.+++++.++    ++.++.||.
T Consensus        74 ~PLIvQf~~------ndp~~ll~Aa~lv~~y-~D~i-dlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs  145 (358)
T KOG2335|consen   74 RPLIVQFGG------NDPENLLKAARLVQPY-CDGI-DLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVS  145 (358)
T ss_pred             CceEEEEcC------CCHHHHHHHHHHhhhh-cCcc-cccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeE
Confidence            566666666      555    345555554 5998 999 666533222  288899999987755    555689999


Q ss_pred             eeccccchHHHHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHH
Q 037779           97 AKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVE  176 (310)
Q Consensus        97 ~kd~i~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~  176 (310)
                      +|.+|+..                     ..                   +|.+.+....++|++.+.|||+...     
T Consensus       146 ~KIRI~~d---------------------~~-------------------kTvd~ak~~e~aG~~~ltVHGRtr~-----  180 (358)
T KOG2335|consen  146 VKIRIFVD---------------------LE-------------------KTVDYAKMLEDAGVSLLTVHGRTRE-----  180 (358)
T ss_pred             EEEEecCc---------------------HH-------------------HHHHHHHHHHhCCCcEEEEecccHH-----
Confidence            99988620                     11                   2445566777889999999976221     


Q ss_pred             HHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCC-CCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccc
Q 037779          177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGR-LPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSG  254 (310)
Q Consensus       177 ~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~-iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsa  254 (310)
                                    ....         +....+|+.++.+++..+ +||  ||+|+|.+++++.++++ .|+||||+|++
T Consensus       181 --------------~kg~---------~~~pad~~~i~~v~~~~~~ipv--iaNGnI~~~~d~~~~~~~tG~dGVM~arg  235 (358)
T KOG2335|consen  181 --------------QKGL---------KTGPADWEAIKAVRENVPDIPV--IANGNILSLEDVERCLKYTGADGVMSARG  235 (358)
T ss_pred             --------------hcCC---------CCCCcCHHHHHHHHHhCcCCcE--EeeCCcCcHHHHHHHHHHhCCceEEecch
Confidence                          1111         012347899999998754 888  78999999999999998 89999999999


Q ss_pred             cccCCCHH----------HHHHHHHHHHHcCC
Q 037779          255 VFKSGDPV----------RRARAIVQAVTNYS  276 (310)
Q Consensus       255 i~~~~dp~----------~~~~~~~~~~~~~~  276 (310)
                      ++.++..+          ..++++.....++.
T Consensus       236 lL~NPa~F~~~~~~~~~~~~~~~~l~~~~e~~  267 (358)
T KOG2335|consen  236 LLYNPALFLTAGYGPTPWGCVEEYLDIAREFG  267 (358)
T ss_pred             hhcCchhhccCCCCCCHHHHHHHHHHHHHHcC
Confidence            99865443          45555555555544

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=99.18  E-value=1.2e-09  Score=99.11  Aligned_cols=178  Identities=22%  Similarity=0.257  Sum_probs=113.0

Q ss_pred             HHHHHHHHcCCcEEEecc-cccchhh------------hc-CCCCCCCChHHHHHHHhhcCcceEeecccc------chH
Q 037779           46 EQARIAEEAGACAVMALE-RVPADIR------------AQ-GGVARMSDPQLIKQIKSSVTIPVMAKARIG------HFV  105 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~~d~r------------~~-~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~------~~~  105 (310)
                      +.++.++++|++++ -++ |.. |+-            +. .|......++.++++++.+++|+......+      ...
T Consensus        18 ~~~~~l~~~Gad~i-el~iPfs-dPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~   95 (242)
T cd04724          18 EILKALVEAGADII-ELGIPFS-DPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQYGLER   95 (242)
T ss_pred             HHHHHHHHCCCCEE-EECCCCC-CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHhCHHH
Confidence            67999999999998 343 110 110            00 011111336788889988899976643332      134


Q ss_pred             HHHHHHHcCCCeeeecCCCChhH---HHHHHHhcCCCCcEEeecCCHH-HHHHHHHhCCCEEEEecC-CCCCchHHHHHH
Q 037779          106 EAQILEAIGVDYVDESEVLTPAD---EENHINKHNFRVPFVCGCRNLG-ESLRRIREGAAMIRTKGE-AGTGNIVEAVRH  180 (310)
Q Consensus       106 ~~~~~~~aGad~v~~~~~~~~~~---~~~~~~~~~~~l~v~~~v~t~~-ea~~a~~~Gad~I~v~g~-~~~~~~~~~~~~  180 (310)
                      .++.+.++|+++++.++. ++++   +.+.+++++....+++...|.. .++...+...+++.+.+. ..++.-      
T Consensus        96 fi~~~~~aG~~giiipDl-~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy~~s~~g~tG~~------  168 (242)
T cd04724          96 FLRDAKEAGVDGLIIPDL-PPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIYYVSRTGVTGAR------  168 (242)
T ss_pred             HHHHHHHCCCcEEEECCC-CHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEEEEeCCCCCCCc------
Confidence            578889999999987654 3343   4455555666655656666644 455555545666543211 111110      


Q ss_pred             HHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       181 ~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                                 ..+           .....+.++.+++..++|+  .+.|||++++++.++.++ |||++|||+|++
T Consensus       169 -----------~~~-----------~~~~~~~i~~lr~~~~~pI--~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~  220 (242)
T cd04724         169 -----------TEL-----------PDDLKELIKRIRKYTDLPI--AVGFGISTPEQAAEVAKY-ADGVIVGSALVK  220 (242)
T ss_pred             -----------cCC-----------ChhHHHHHHHHHhcCCCcE--EEEccCCCHHHHHHHHcc-CCEEEECHHHHH
Confidence                       000           0113567777877778899  569999999999999999 999999999987

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=99.18  E-value=7.8e-10  Score=104.18  Aligned_cols=151  Identities=30%  Similarity=0.492  Sum_probs=101.5

Q ss_pred             HHHHHHHHcCCcEEEecc-cccchh--hhcCCCCCCCChHHHH----HHHhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779           46 EQARIAEEAGACAVMALE-RVPADI--RAQGGVARMSDPQLIK----QIKSSVTIPVMAKARIGHFVEAQILEAIGVDYV  118 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~~d~--r~~~G~~~~~~~~~i~----~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v  118 (310)
                      +.|+.+.++|+++| ++| .+|...  +..+|+.++.+++.+.    .+++.+++||.+|.+.++.              
T Consensus        79 ~aa~~~~~~G~d~I-elN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~--------------  143 (319)
T TIGR00737        79 EAAKINEELGADII-DINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWD--------------  143 (319)
T ss_pred             HHHHHHHhCCCCEE-EEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccC--------------
Confidence            55788888999998 888 555432  2345776666776654    4566678999999765520              


Q ss_pred             eecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchh
Q 037779          119 DESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDE  198 (310)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  198 (310)
                         .  ...+                   ..+-+..+.+.|+|.+.+++.....                    ...   
T Consensus       144 ---~--~~~~-------------------~~~~a~~l~~~G~d~i~vh~r~~~~--------------------~~~---  176 (319)
T TIGR00737       144 ---D--AHIN-------------------AVEAARIAEDAGAQAVTLHGRTRAQ--------------------GYS---  176 (319)
T ss_pred             ---C--Ccch-------------------HHHHHHHHHHhCCCEEEEEcccccc--------------------cCC---
Confidence               0  0000                   0112334456688888887541110                    000   


Q ss_pred             HHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHH-HcCCCEEEEccccccCCCHHHHHHH
Q 037779          199 VFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPVRRARA  267 (310)
Q Consensus       199 ~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~-~~GadgV~VGsai~~~~dp~~~~~~  267 (310)
                             -...++.++.+++..++||  |++|||.|++++.+++ ..|||+|++|++++..++.+..++.
T Consensus       177 -------~~~~~~~i~~i~~~~~ipv--i~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~  237 (319)
T TIGR00737       177 -------GEANWDIIARVKQAVRIPV--IGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQ  237 (319)
T ss_pred             -------CchhHHHHHHHHHcCCCcE--EEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHH
Confidence                   1235788888888778999  6799999999999999 5799999999999997776555443

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP)

Probab=99.17  E-value=2.6e-09  Score=94.12  Aligned_cols=182  Identities=23%  Similarity=0.265  Sum_probs=112.4

Q ss_pred             CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-----CcceEeeccccchHHHHHHHHcCCC
Q 037779           42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-----TIPVMAKARIGHFVEAQILEAIGVD  116 (310)
Q Consensus        42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-----~lPv~~kd~i~~~~~~~~~~~aGad  116 (310)
                      ..+++.++.+.++|+++++ ++.       +..+.+.-+.+..+++++.+     .++|++++...  +-.+.+.+.|+|
T Consensus         6 i~~~ed~~~a~~~Gvd~ig-~i~-------~~~s~R~v~~~~a~~l~~~~~~~~~~V~v~vn~~~~--~i~~ia~~~~~d   75 (203)
T cd00405           6 ITTLEDALAAAEAGADAIG-FIF-------APKSPRYVSPEQAREIVAALPPFVKRVGVFVNEDLE--EILEIAEELGLD   75 (203)
T ss_pred             CCCHHHHHHHHHcCCCEEE-Eec-------CCCCCCCCCHHHHHHHHHhCCCCCcEEEEEeCCCHH--HHHHHHHhcCCC
Confidence            4568899999999999994 421       22222333466777776654     35666665543  233677789999


Q ss_pred             eeeecCCCChhHHHHHHHh-cCCCCcEEeecCCHHH--HHHHHHhCCCEEEEecCCC---CCchHHHHHHHHHhhcceec
Q 037779          117 YVDESEVLTPADEENHINK-HNFRVPFVCGCRNLGE--SLRRIREGAAMIRTKGEAG---TGNIVEAVRHVRSVMGDIRV  190 (310)
Q Consensus       117 ~v~~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~e--a~~a~~~Gad~I~v~g~~~---~~~~~~~~~~~~~~~~~~~~  190 (310)
                      +|+.+... +.+..+.+++ .+..+...+.+++..+  +..+...++||+.+.....   +++                 
T Consensus        76 ~Vqlhg~e-~~~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~-----------------  137 (203)
T cd00405          76 VVQLHGDE-SPEYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGT-----------------  137 (203)
T ss_pred             EEEECCCC-CHHHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCC-----------------
Confidence            99855332 3344455554 2333332255544443  3355567999986542111   000                 


Q ss_pred             ccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCC--HHHHHHH
Q 037779          191 LRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGD--PVRRARA  267 (310)
Q Consensus       191 l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~d--p~~~~~~  267 (310)
                                    +...+|++++.+.  .++|+  +++||| |++++.++++.| ++||.|+|+|..++-  -...+++
T Consensus       138 --------------g~~~~~~~l~~~~--~~~Pv--ilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~~pg~kd~~ki~~  198 (203)
T cd00405         138 --------------GKTFDWSLLRGLA--SRKPV--ILAGGL-TPDNVAEAIRLVRPYGVDVSSGVETSPGIKDPEKIRA  198 (203)
T ss_pred             --------------cceEChHHhhccc--cCCCE--EEECCC-ChHHHHHHHHhcCCCEEEcCCcccCCCCCcCHHHHHH
Confidence                          1123577776665  46899  457999 799999999998 999999999998721  1334455


Q ss_pred             HHH
Q 037779          268 IVQ  270 (310)
Q Consensus       268 ~~~  270 (310)
                      |.+
T Consensus       199 ~~~  201 (203)
T cd00405         199 FIE  201 (203)
T ss_pred             HHH
Confidence            544

Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.

>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4

Probab=99.16  E-value=1.1e-09  Score=99.69  Aligned_cols=195  Identities=22%  Similarity=0.257  Sum_probs=120.1

Q ss_pred             HHHHHHHHHcCCcEEEecc-ccc-------ch----hhh-cCCCCCCCChHHHHHHH-hhcCcceEeecccc------ch
Q 037779           45 PEQARIAEEAGACAVMALE-RVP-------AD----IRA-QGGVARMSDPQLIKQIK-SSVTIPVMAKARIG------HF  104 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~-~~~-------~d----~r~-~~G~~~~~~~~~i~~i~-~~~~lPv~~kd~i~------~~  104 (310)
                      .+.++.+.++|++.| -+. |..       .-    .++ ..|.....-++.++++| +..++|++.....+      ..
T Consensus        27 ~~~~~~l~~~GaD~i-EiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e  105 (259)
T PF00290_consen   27 LEILKALEEAGADII-EIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIE  105 (259)
T ss_dssp             HHHHHHHHHTTBSSE-EEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HH
T ss_pred             HHHHHHHHHcCCCEE-EECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhccchH
Confidence            378999999999987 332 111       10    111 12443333356778888 77899998865543      22


Q ss_pred             HHHHHHHHcCCCeeeecCCCChh---HHHHHHHhcCCCCcEEeecCCHHH-HHHHHHhCCCEEEEecC-CCCCchHHHHH
Q 037779          105 VEAQILEAIGVDYVDESEVLTPA---DEENHINKHNFRVPFVCGCRNLGE-SLRRIREGAAMIRTKGE-AGTGNIVEAVR  179 (310)
Q Consensus       105 ~~~~~~~~aGad~v~~~~~~~~~---~~~~~~~~~~~~l~v~~~v~t~~e-a~~a~~~Gad~I~v~g~-~~~~~~~~~~~  179 (310)
                      ..++.+.++|+|++++++. +++   ++.+.+.+++..+..++..+|.++ +++..+....+|..... +-||.-     
T Consensus       106 ~F~~~~~~aGvdGlIipDL-P~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~gFiY~vs~~GvTG~~-----  179 (259)
T PF00290_consen  106 RFFKEAKEAGVDGLIIPDL-PPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQASGFIYLVSRMGVTGSR-----  179 (259)
T ss_dssp             HHHHHHHHHTEEEEEETTS-BGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-SSEEEEESSSSSSSTT-----
T ss_pred             HHHHHHHHcCCCEEEEcCC-ChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCcEEEeeccCCCCCCc-----
Confidence            4667888899999998875 333   444555567777677777666555 44555666677765322 223310     


Q ss_pred             HHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC-
Q 037779          180 HVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS-  258 (310)
Q Consensus       180 ~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~-  258 (310)
                                  ..+ .          ..-.+.++.+++..++||  ++..||+++++++++. .|||||+|||+|++. 
T Consensus       180 ------------~~~-~----------~~l~~~i~~ik~~~~~Pv--~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~~i  233 (259)
T PF00290_consen  180 ------------TEL-P----------DELKEFIKRIKKHTDLPV--AVGFGISTPEQAKKLA-AGADGVIVGSAFVKII  233 (259)
T ss_dssp             ------------SSC-H----------HHHHHHHHHHHHTTSS-E--EEESSS-SHHHHHHHH-TTSSEEEESHHHHHHH
T ss_pred             ------------ccc-h----------HHHHHHHHHHHhhcCcce--EEecCCCCHHHHHHHH-ccCCEEEECHHHHHHH
Confidence                        000 0          012567788888788999  5699999999999998 999999999999873 


Q ss_pred             ----CCHHHHHHHHHHHH
Q 037779          259 ----GDPVRRARAIVQAV  272 (310)
Q Consensus       259 ----~dp~~~~~~~~~~~  272 (310)
                          ++....++++.+.+
T Consensus       234 ~~~~~~~~~~~~~~~~~~  251 (259)
T PF00290_consen  234 EENGDDAEKFLKELKEFV  251 (259)
T ss_dssp             HHTCCHHHHHHHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHH
Confidence                23344445554444

2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=99.16  E-value=6.4e-10  Score=99.73  Aligned_cols=135  Identities=18%  Similarity=0.188  Sum_probs=93.6

Q ss_pred             HHHHHHHcCCcEEEecc---cccchhhhcCCCCCCCChHHHHHHHhh---cCcceEeeccccchHHHHHHHHcCCCeeee
Q 037779           47 QARIAEEAGACAVMALE---RVPADIRAQGGVARMSDPQLIKQIKSS---VTIPVMAKARIGHFVEAQILEAIGVDYVDE  120 (310)
Q Consensus        47 ~a~~~~~~Ga~~I~~l~---~~~~d~r~~~G~~~~~~~~~i~~i~~~---~~lPv~~kd~i~~~~~~~~~~~aGad~v~~  120 (310)
                      .++.+. .++++| ++|   |++.-.+...|+.++++++.+.++.+.   .++||++|.+.+...               
T Consensus        85 ~a~~v~-~~~d~I-diN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~~~---------------  147 (231)
T TIGR00736        85 VLLTIA-EHADII-EINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNCIP---------------  147 (231)
T ss_pred             HHHHHh-cCCCEE-EEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCCCc---------------
Confidence            345554 489988 899   555444445688889999988766543   378999998875210               


Q ss_pred             cCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHH
Q 037779          121 SEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVF  200 (310)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~  200 (310)
                            .                   .+.+-++.+.+.|+|.+.++.. +.+.                           
T Consensus       148 ------~-------------------~~~~~a~~l~~aGad~i~Vd~~-~~g~---------------------------  174 (231)
T TIGR00736       148 ------L-------------------DELIDALNLVDDGFDGIHVDAM-YPGK---------------------------  174 (231)
T ss_pred             ------c-------------------hHHHHHHHHHHcCCCEEEEeeC-CCCC---------------------------
Confidence                  0                   0112234455667777766521 1110                           


Q ss_pred             hhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          201 TFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       201 ~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                           ....++.++.+++.. ++||  |++|||.|++|+.+++++|||+|++|+++++.
T Consensus       175 -----~~a~~~~I~~i~~~~~~ipI--IgNGgI~s~eda~e~l~~GAd~VmvgR~~l~~  226 (231)
T TIGR00736       175 -----PYADMDLLKILSEEFNDKII--IGNNSIDDIESAKEMLKAGADFVSVARAILKG  226 (231)
T ss_pred             -----chhhHHHHHHHHHhcCCCcE--EEECCcCCHHHHHHHHHhCCCeEEEcHhhccC
Confidence                 013578888888876 4898  78999999999999999999999999999875

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=99.15  E-value=1.3e-08  Score=89.49  Aligned_cols=156  Identities=16%  Similarity=0.145  Sum_probs=110.8

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeec-cccchHHHHHHHHcCCCeeeecCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKA-RIGHFVEAQILEAIGVDYVDESEVL  124 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd-~i~~~~~~~~~~~aGad~v~~~~~~  124 (310)
                      +.++.+.++|...+ -+       ....    ..-.+.|+++++...- +++.- -+.+.++++.+.++||+++..+.. 
T Consensus        20 ~ia~al~~gGi~~i-Ei-------t~~t----p~a~~~I~~l~~~~~~-~~vGAGTVl~~e~a~~ai~aGA~FivSP~~-   85 (201)
T PRK06015         20 PLARALAAGGLPAI-EI-------TLRT----PAALDAIRAVAAEVEE-AIVGAGTILNAKQFEDAAKAGSRFIVSPGT-   85 (201)
T ss_pred             HHHHHHHHCCCCEE-EE-------eCCC----ccHHHHHHHHHHHCCC-CEEeeEeCcCHHHHHHHHHcCCCEEECCCC-
Confidence            67999999999987 22       1111    1115677777766531 32322 222457889999999999975542 


Q ss_pred             ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecC-CCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779          125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGE-AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA  203 (310)
Q Consensus       125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  203 (310)
                       .+++++..++  .+++++.++-|+.|+..+.+.|+++|+++.. ..+|                               
T Consensus        86 -~~~vi~~a~~--~~i~~iPG~~TptEi~~A~~~Ga~~vK~FPa~~~GG-------------------------------  131 (201)
T PRK06015         86 -TQELLAAAND--SDVPLLPGAATPSEVMALREEGYTVLKFFPAEQAGG-------------------------------  131 (201)
T ss_pred             -CHHHHHHHHH--cCCCEeCCCCCHHHHHHHHHCCCCEEEECCchhhCC-------------------------------
Confidence             4667777765  5699999999999999999999999999832 1111                               


Q ss_pred             ccCCCcHHHHHHHHh-cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          204 KNIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       204 ~~~~~~~~l~~~i~~-~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                            ..+++.++. ..++|+  ++.||| +++++.+++++|+..++.||.++..
T Consensus       132 ------~~yikal~~plp~~~l--~ptGGV-~~~n~~~~l~ag~~~~~ggs~l~~~  178 (201)
T PRK06015        132 ------AAFLKALSSPLAGTFF--CPTGGI-SLKNARDYLSLPNVVCVGGSWVAPK  178 (201)
T ss_pred             ------HHHHHHHHhhCCCCcE--EecCCC-CHHHHHHHHhCCCeEEEEchhhCCc
Confidence                  223444443 246788  578999 5999999999998888889999864

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=99.14  E-value=1.8e-09  Score=102.01  Aligned_cols=178  Identities=22%  Similarity=0.287  Sum_probs=111.6

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc---------CcceEeeccc--cchHHHHH
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV---------TIPVMAKARI--GHFVEAQI  109 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~---------~lPv~~kd~i--~~~~~~~~  109 (310)
                      .+.+.++|..+...|.-++.-. +.+.+..          .+.++++++..         ++.|.+-...  .+++.++.
T Consensus        47 tVte~~mAiama~~Gglgvih~-~~~~e~q----------~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~~  115 (352)
T PF00478_consen   47 TVTESEMAIAMARLGGLGVIHR-NMSIEEQ----------AEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAEA  115 (352)
T ss_dssp             TTSSHHHHHHHHHTTSEEEEES-SSCHHHH----------HHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHHH
T ss_pred             ccchHHHHHHHHHhcCCceecC-CCCHHHH----------HHHHhhhccccccccccccccceEEEEecCCHHHHHHHHH
Confidence            3455799999999988886322 2222211          44566665431         2333332222  23567888


Q ss_pred             HHHcCCCeeeec--CCCC--hhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEe-cC--CCCCchHHHHHHH
Q 037779          110 LEAIGVDYVDES--EVLT--PADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTK-GE--AGTGNIVEAVRHV  181 (310)
Q Consensus       110 ~~~aGad~v~~~--~~~~--~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~-g~--~~~~~~~~~~~~~  181 (310)
                      +.++|+|.+.++  ..-+  ..+.++.+++..++++++++ +-|.+-++..++.|+|.|++. |+  .+++..       
T Consensus       116 L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~-------  188 (352)
T PF00478_consen  116 LVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTTRE-------  188 (352)
T ss_dssp             HHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHHHH-------
T ss_pred             HHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHcCCCEEEEeccCCccccccc-------
Confidence            999999998742  3222  33456667666677888885 889999999999999999996 43  233210       


Q ss_pred             HHhhcceecccccCchhHHhhhccCCCc-HHHHHHHHh---cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          182 RSVMGDIRVLRNMDDDEVFTFAKNIAAP-YDLVMQTKQ---LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       182 ~~~~~~~~~l~~~~~d~~~~~~~~~~~~-~~l~~~i~~---~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                               ..            +++.| ...+..+.+   .-.+||  ||.|||.++-|+.+++.+|||.||+|+.|..
T Consensus       189 ---------v~------------GvG~PQ~tAv~~~a~~a~~~~v~i--IADGGi~~sGDi~KAla~GAd~VMlG~llAg  245 (352)
T PF00478_consen  189 ---------VT------------GVGVPQLTAVYECAEAARDYGVPI--IADGGIRTSGDIVKALAAGADAVMLGSLLAG  245 (352)
T ss_dssp             ---------HH------------SBSCTHHHHHHHHHHHHHCTTSEE--EEESS-SSHHHHHHHHHTT-SEEEESTTTTT
T ss_pred             ---------cc------------ccCCcHHHHHHHHHHHhhhccCce--eecCCcCcccceeeeeeecccceeechhhcc
Confidence                     01            12222 112222222   236888  7899999999999999999999999999998


Q ss_pred             CC
Q 037779          258 SG  259 (310)
Q Consensus       258 ~~  259 (310)
                      +.
T Consensus       246 t~  247 (352)
T PF00478_consen  246 TD  247 (352)
T ss_dssp             BT
T ss_pred             Cc
Confidence            65

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane

Probab=99.14  E-value=7.9e-09  Score=93.76  Aligned_cols=182  Identities=23%  Similarity=0.359  Sum_probs=119.6

Q ss_pred             HHHHHHHHcCCcEEEecc--cccchhhhcCCCCCCCChH-------HHHHHHhhcCcceEeeccccch-HHHHHHHHcCC
Q 037779           46 EQARIAEEAGACAVMALE--RVPADIRAQGGVARMSDPQ-------LIKQIKSSVTIPVMAKARIGHF-VEAQILEAIGV  115 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~--~~~~d~r~~~G~~~~~~~~-------~i~~i~~~~~lPv~~kd~i~~~-~~~~~~~~aGa  115 (310)
                      +.++.++++|+|+++.-|  ..|-    ...    ..++       .+.++++.+++|+-++..-++. .-+.++.+.||
T Consensus        33 ~ea~~l~~~GvDgiiveN~~D~Py----~~~----~~~etvaaM~~i~~~v~~~~~~p~GVnvL~nd~~aalaiA~A~ga  104 (254)
T PF03437_consen   33 REAEALEEGGVDGIIVENMGDVPY----PKR----VGPETVAAMARIAREVRREVSVPVGVNVLRNDPKAALAIAAATGA  104 (254)
T ss_pred             HHHHHHHHCCCCEEEEecCCCCCc----cCC----CCHHHHHHHHHHHHHHHHhCCCCEEeeeecCCCHHHHHHHHHhCC
Confidence            679999999999996555  2221    000    1133       3446677788998887655332 34567778999


Q ss_pred             Ceee-ec--------CCC---ChhHHHHHHHhcCCCCcEEeecC----------CHHHHH-HH-HHhCCCEEEEecCCCC
Q 037779          116 DYVD-ES--------EVL---TPADEENHINKHNFRVPFVCGCR----------NLGESL-RR-IREGAAMIRTKGEAGT  171 (310)
Q Consensus       116 d~v~-~~--------~~~---~~~~~~~~~~~~~~~l~v~~~v~----------t~~ea~-~a-~~~Gad~I~v~g~~~~  171 (310)
                      |+|- ..        ..+   ...++.++-+..+..+.++.+++          +.++.. .+ ...++|.+.+.|...+
T Consensus       105 ~FIRv~~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVtG~~TG  184 (254)
T PF03437_consen  105 DFIRVNVFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVTGKATG  184 (254)
T ss_pred             CEEEecCEEceecccCccccccHHHHHHHHHHcCCCeEEEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEECCcccC
Confidence            9975 11        111   12244443333444577777763          344443 33 3568888888765221


Q ss_pred             CchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEE
Q 037779          172 GNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFV  251 (310)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~V  251 (310)
                                                        ..++.+.++++++..++||  ++++|+ |++++.++++. |||++|
T Consensus       185 ----------------------------------~~~~~~~l~~vr~~~~~PV--lvGSGv-t~~Ni~~~l~~-ADG~IV  226 (254)
T PF03437_consen  185 ----------------------------------EPPDPEKLKRVREAVPVPV--LVGSGV-TPENIAEYLSY-ADGAIV  226 (254)
T ss_pred             ----------------------------------CCCCHHHHHHHHhcCCCCE--EEecCC-CHHHHHHHHHh-CCEEEE
Confidence                                              2346677888888767999  569999 69999999998 999999


Q ss_pred             ccccccCCC---H--HHHHHHHHHHHH
Q 037779          252 GSGVFKSGD---P--VRRARAIVQAVT  273 (310)
Q Consensus       252 Gsai~~~~d---p--~~~~~~~~~~~~  273 (310)
                      ||.|-+..+   |  .+++++|.+.++
T Consensus       227 GS~~K~~G~~~n~VD~~Rv~~fm~~v~  253 (254)
T PF03437_consen  227 GSYFKKDGKWENPVDPERVRRFMEAVK  253 (254)
T ss_pred             eeeeeeCCEeCCcCCHHHHHHHHHHhh
Confidence            999997553   3  568888888775

It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=99.13  E-value=3.3e-09  Score=91.10  Aligned_cols=174  Identities=26%  Similarity=0.337  Sum_probs=109.7

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHH-----HHHHHHcCCCeee
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVE-----AQILEAIGVDYVD  119 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~-----~~~~~~aGad~v~  119 (310)
                      .++++.+.++|++.+.....   +. .+.+.. ....+.+..+++..+.|+.++........     ++.+.++|+|.|.
T Consensus        15 ~~~~~~~~~~G~~~v~~~~~---~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~   89 (200)
T cd04722          15 VELAKAAAEAGADAIIVGTR---SS-DPEEAE-TDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVE   89 (200)
T ss_pred             HHHHHHHHcCCCCEEEEeeE---EE-CcccCC-CccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEE
Confidence            58899999999999854421   00 011110 00113577777788999999877653222     2467889999998


Q ss_pred             ecCCCC-----hhHHHHHHHhcCCCCcEEeecCCHHHHHH--HHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceeccc
Q 037779          120 ESEVLT-----PADEENHINKHNFRVPFVCGCRNLGESLR--RIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLR  192 (310)
Q Consensus       120 ~~~~~~-----~~~~~~~~~~~~~~l~v~~~v~t~~ea~~--a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~  192 (310)
                      .+....     ..+..+.+++..+++++.+.++...+...  ..+.|+|++.+.+...++..                  
T Consensus        90 l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~------------------  151 (200)
T cd04722          90 IHGAVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGG------------------  151 (200)
T ss_pred             EeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCC------------------
Confidence            543322     34555666654346888888776555444  36789999988644222110                  


Q ss_pred             ccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779          193 NMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       193 ~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs  253 (310)
                       ...         .......+..+.+..++|+  +++|||.+++++.+++++|||+|++||
T Consensus       152 -~~~---------~~~~~~~~~~~~~~~~~pi--~~~GGi~~~~~~~~~~~~Gad~v~vgs  200 (200)
T cd04722         152 -RDA---------VPIADLLLILAKRGSKVPV--IAGGGINDPEDAAEALALGADGVIVGS  200 (200)
T ss_pred             -ccC---------chhHHHHHHHHHhcCCCCE--EEECCCCCHHHHHHHHHhCCCEEEecC
Confidence             000         0001233444444567899  568999988999999999999999997

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=99.13  E-value=2.2e-09  Score=93.91  Aligned_cols=158  Identities=18%  Similarity=0.249  Sum_probs=106.6

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeeecCC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDESEV  123 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~  123 (310)
                      .+.++++.++|...+ -+       ....    ..-.+.|+.+++.. ++-|-+.. +-+.++++.+.++||+++..+..
T Consensus        23 ~~~~~al~~gGi~~i-Ei-------T~~t----~~a~~~I~~l~~~~p~~~vGAGT-V~~~e~a~~a~~aGA~FivSP~~   89 (196)
T PF01081_consen   23 VPIAEALIEGGIRAI-EI-------TLRT----PNALEAIEALRKEFPDLLVGAGT-VLTAEQAEAAIAAGAQFIVSPGF   89 (196)
T ss_dssp             HHHHHHHHHTT--EE-EE-------ETTS----TTHHHHHHHHHHHHTTSEEEEES---SHHHHHHHHHHT-SEEEESS-
T ss_pred             HHHHHHHHHCCCCEE-EE-------ecCC----ccHHHHHHHHHHHCCCCeeEEEe-ccCHHHHHHHHHcCCCEEECCCC
Confidence            478999999999987 22       1111    01156777777765 33222222 22557889999999999976543


Q ss_pred             CChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecC-CCCCchHHHHHHHHHhhcceecccccCchhHHhh
Q 037779          124 LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGE-AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTF  202 (310)
Q Consensus       124 ~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~  202 (310)
                        .+++.+..++  .+++++.++.|+.|+..+.+.|+++++++.. ..+                               
T Consensus        90 --~~~v~~~~~~--~~i~~iPG~~TptEi~~A~~~G~~~vK~FPA~~~G-------------------------------  134 (196)
T PF01081_consen   90 --DPEVIEYARE--YGIPYIPGVMTPTEIMQALEAGADIVKLFPAGALG-------------------------------  134 (196)
T ss_dssp             ---HHHHHHHHH--HTSEEEEEESSHHHHHHHHHTT-SEEEETTTTTTT-------------------------------
T ss_pred             --CHHHHHHHHH--cCCcccCCcCCHHHHHHHHHCCCCEEEEecchhcC-------------------------------
Confidence              4677777766  3699999999999999999999999999832 111                               


Q ss_pred             hccCCCcHHHHHHHHh-cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          203 AKNIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       203 ~~~~~~~~~l~~~i~~-~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                            ...+++.++. ..++|+  ++.||| +++++.+++++|+.++.+||.++..+
T Consensus       135 ------G~~~ik~l~~p~p~~~~--~ptGGV-~~~N~~~~l~ag~~~vg~Gs~L~~~~  183 (196)
T PF01081_consen  135 ------GPSYIKALRGPFPDLPF--MPTGGV-NPDNLAEYLKAGAVAVGGGSWLFPKD  183 (196)
T ss_dssp             ------HHHHHHHHHTTTTT-EE--EEBSS---TTTHHHHHTSTTBSEEEESGGGSHH
T ss_pred             ------cHHHHHHHhccCCCCeE--EEcCCC-CHHHHHHHHhCCCEEEEECchhcCHH
Confidence                  1234444444 245777  678999 58999999999999999999999843

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=99.12  E-value=1.2e-09  Score=108.68  Aligned_cols=130  Identities=19%  Similarity=0.179  Sum_probs=94.1

Q ss_pred             hHHHHHHHHcCCCeeee--cCCCChh--HHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEe-cCC--CCCchH
Q 037779          104 FVEAQILEAIGVDYVDE--SEVLTPA--DEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTK-GEA--GTGNIV  175 (310)
Q Consensus       104 ~~~~~~~~~aGad~v~~--~~~~~~~--~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~-g~~--~~~~~~  175 (310)
                      .+.++.+.++|+|.|.+  ++..+..  +.++.+++..+++.+++ ++.|.++++.+.++|+|+|.+. |+.  +++.. 
T Consensus       250 ~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~-  328 (505)
T PLN02274        250 KERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQE-  328 (505)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCcc-
Confidence            46788999999999873  2333333  67888887667788876 6999999999999999999874 222  22110 


Q ss_pred             HHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccc
Q 037779          176 EAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGV  255 (310)
Q Consensus       176 ~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai  255 (310)
                                     .....        +........+..+.+..++||  |++|||.++.|+.+++++||++|++||+|
T Consensus       329 ---------------~~~~g--------~~~~~~i~~~~~~~~~~~vpV--IadGGI~~~~di~kAla~GA~~V~vGs~~  383 (505)
T PLN02274        329 ---------------VCAVG--------RGQATAVYKVASIAAQHGVPV--IADGGISNSGHIVKALTLGASTVMMGSFL  383 (505)
T ss_pred             ---------------ccccC--------CCcccHHHHHHHHHHhcCCeE--EEeCCCCCHHHHHHHHHcCCCEEEEchhh
Confidence                           00000        001123444566655567899  78999999999999999999999999999


Q ss_pred             ccCC
Q 037779          256 FKSG  259 (310)
Q Consensus       256 ~~~~  259 (310)
                      ..+.
T Consensus       384 ~~t~  387 (505)
T PLN02274        384 AGTT  387 (505)
T ss_pred             cccc
Confidence            9865

>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]

Probab=99.12  E-value=4.3e-09  Score=92.95  Aligned_cols=189  Identities=24%  Similarity=0.373  Sum_probs=126.0

Q ss_pred             HHHHHHHHcCCcEEEecc----cccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccch-HHHHHHHHcCCCeee-
Q 037779           46 EQARIAEEAGACAVMALE----RVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHF-VEAQILEAIGVDYVD-  119 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~----~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~-~~~~~~~~aGad~v~-  119 (310)
                      +.|.+++++|+++++.-|    |.++++..-. ..-|  ...++++.+.+.+|+-++..-++. .-+.++.+.||++|- 
T Consensus        38 ~dA~~leegG~DavivEN~gD~Pf~k~v~~~t-vaaM--a~iv~~v~r~v~iPvGvNVLrNd~vaA~~IA~a~gA~FIRV  114 (263)
T COG0434          38 RDAAALEEGGVDAVIVENYGDAPFLKDVGPET-VAAM--AVIVREVVREVSIPVGVNVLRNDAVAALAIAYAVGADFIRV  114 (263)
T ss_pred             HHHHHHHhCCCcEEEEeccCCCCCCCCCChHH-HHHH--HHHHHHHHHhccccceeeeeccccHHHHHHHHhcCCCEEEE
Confidence            569999999999996556    4444332110 0001  234567777888999887655432 344677889999975 


Q ss_pred             ec---CCCC--------hhHHHHHHHhcCCCCcEEeecC----------CHHHHHHH-H-HhCCCEEEEecCCCCCchHH
Q 037779          120 ES---EVLT--------PADEENHINKHNFRVPFVCGCR----------NLGESLRR-I-REGAAMIRTKGEAGTGNIVE  176 (310)
Q Consensus       120 ~~---~~~~--------~~~~~~~~~~~~~~l~v~~~v~----------t~~ea~~a-~-~~Gad~I~v~g~~~~~~~~~  176 (310)
                      ..   ...+        ..++.++....+.++.++++++          +.+++.+- . +.+||.+.+.|...+     
T Consensus       115 N~~tg~~~tdqGiieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~~~~~~v~dtver~~aDaVI~tG~~TG-----  189 (263)
T COG0434         115 NVLTGAYATDQGIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGNRSLEEAVKDTVERGLADAVIVTGSRTG-----  189 (263)
T ss_pred             EeeeceEecccceecchHHHHHHHHHhccCCcEEEeecchhcccccCCcCHHHHHHHHHHccCCCEEEEecccCC-----
Confidence            11   1111        2244444444445677888764          55555432 3 467788888766332     


Q ss_pred             HHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc
Q 037779          177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF  256 (310)
Q Consensus       177 ~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~  256 (310)
                                                   ..++.+.++.+++..++||  ++.+|+ +++++..+++. +||++|||.|-
T Consensus       190 -----------------------------~~~d~~el~~a~~~~~~pv--lvGSGv-~~eN~~~~l~~-adG~IvgT~lK  236 (263)
T COG0434         190 -----------------------------SPPDLEELKLAKEAVDTPV--LVGSGV-NPENIEELLKI-ADGVIVGTSLK  236 (263)
T ss_pred             -----------------------------CCCCHHHHHHHHhccCCCE--EEecCC-CHHHHHHHHHH-cCceEEEEEEc
Confidence                                         1345677788888778999  679999 69999999999 99999999998


Q ss_pred             cCC---CH--HHHHHHHHHHHHcC
Q 037779          257 KSG---DP--VRRARAIVQAVTNY  275 (310)
Q Consensus       257 ~~~---dp--~~~~~~~~~~~~~~  275 (310)
                      +..   ||  .+++++|.++.+..
T Consensus       237 ~~G~~~n~VD~~Rv~~~v~~a~~~  260 (263)
T COG0434         237 KGGVTWNPVDLERVRRFVEAARRL  260 (263)
T ss_pred             cCCEecCccCHHHHHHHHHHHHHh
Confidence            876   33  45778888877643

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=99.12  E-value=2e-09  Score=101.95  Aligned_cols=161  Identities=23%  Similarity=0.304  Sum_probs=101.3

Q ss_pred             HHHHHHHHcCCcEEEecc-cccch--hhhcCCCCCCCChHHHH----HHHhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779           46 EQARIAEEAGACAVMALE-RVPAD--IRAQGGVARMSDPQLIK----QIKSSVTIPVMAKARIGHFVEAQILEAIGVDYV  118 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~~d--~r~~~G~~~~~~~~~i~----~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v  118 (310)
                      +.|+.+.++|+++| ++| .||..  .+...|+..+.+++.+.    ++++.+++||.+|.+++..              
T Consensus        81 ~aA~~~~~~g~d~I-dlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~--------------  145 (333)
T PRK11815         81 EAAKLAEDWGYDEI-NLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGID--------------  145 (333)
T ss_pred             HHHHHHHhcCCCEE-EEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeC--------------
Confidence            45788888999998 898 44432  22223666777776654    5566678999999876521              


Q ss_pred             eecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchh
Q 037779          119 DESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDE  198 (310)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  198 (310)
                         +..+..+..+                   -+..+.+.|++.+.++++....                   ...+...
T Consensus       146 ---~~~t~~~~~~-------------------~~~~l~~aG~d~i~vh~Rt~~~-------------------~g~~~~~  184 (333)
T PRK11815        146 ---DQDSYEFLCD-------------------FVDTVAEAGCDTFIVHARKAWL-------------------KGLSPKE  184 (333)
T ss_pred             ---CCcCHHHHHH-------------------HHHHHHHhCCCEEEEcCCchhh-------------------cCCCccc
Confidence               0001111111                   1233445688888777442100                   0000000


Q ss_pred             HHhhhcc-CCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 037779          199 VFTFAKN-IAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV  269 (310)
Q Consensus       199 ~~~~~~~-~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~  269 (310)
                          .+. ....++.+..+++. .++||  |++|||.|++++.++++ |||+|++|++++..++.+..++++.
T Consensus       185 ----~~~~~~~~~~~i~~v~~~~~~iPV--I~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~~~~~~~~~~  250 (333)
T PRK11815        185 ----NREIPPLDYDRVYRLKRDFPHLTI--EINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPYLLAEVDREL  250 (333)
T ss_pred             ----cccCCCcCHHHHHHHHHhCCCCeE--EEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCHHHHHHHHHh
Confidence                000 12357888888876 48999  67999999999999987 6999999999999887666555443

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=99.10  E-value=5e-10  Score=106.18  Aligned_cols=181  Identities=22%  Similarity=0.249  Sum_probs=110.9

Q ss_pred             HHHHHHHHcCCcEEEecc-cc-cchhhhcCCCCC-CCChHHHHHHHhhcCcceEeecccc---chHHHHHHHHcCCCeee
Q 037779           46 EQARIAEEAGACAVMALE-RV-PADIRAQGGVAR-MSDPQLIKQIKSSVTIPVMAKARIG---HFVEAQILEAIGVDYVD  119 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~-~~d~r~~~G~~~-~~~~~~i~~i~~~~~lPv~~kd~i~---~~~~~~~~~~aGad~v~  119 (310)
                      ++++.+.++|+++| .+| .+ |.+.. +.|... ....+.++++++.+++||++|...+   ..+.++.+.++|+|+|.
T Consensus       118 ~~a~~~~~agad~i-elN~scpp~~~~-~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~  195 (334)
T PRK07565        118 DYARQIEQAGADAL-ELNIYYLPTDPD-ISGAEVEQRYLDILRAVKSAVSIPVAVKLSPYFSNLANMAKRLDAAGADGLV  195 (334)
T ss_pred             HHHHHHHHcCCCEE-EEeCCCCCCCCC-CccccHHHHHHHHHHHHHhccCCcEEEEeCCCchhHHHHHHHHHHcCCCeEE
Confidence            67899999999998 677 33 32221 222211 1124667888988999999995432   12455777889999986


Q ss_pred             ecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhH
Q 037779          120 ESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEV  199 (310)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  199 (310)
                      .+.....             ..+  +..+.    .       .  ..+..+++.                        . 
T Consensus       196 ~~n~~~~-------------~~~--d~~~~----~-------~--~~~~glsg~------------------------~-  222 (334)
T PRK07565        196 LFNRFYQ-------------PDI--DLETL----E-------V--VPGLVLSTP------------------------A-  222 (334)
T ss_pred             EECCcCC-------------CCc--Chhhc----c-------c--ccCCCCCCc------------------------h-
Confidence            4322100             000  00000    0       0  000111110                        0 


Q ss_pred             HhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChh
Q 037779          200 FTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPD  279 (310)
Q Consensus       200 ~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~  279 (310)
                           .....++.+..+++..++||  |+.|||.|++|+.+++.+||++|++||+++... | ...+.+.+.+..+....
T Consensus       223 -----~~~~al~~v~~~~~~~~ipI--ig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g-~-~~~~~i~~~L~~~l~~~  293 (334)
T PRK07565        223 -----ELRLPLRWIAILSGRVGADL--AATTGVHDAEDVIKMLLAGADVVMIASALLRHG-P-DYIGTILRGLEDWMERH  293 (334)
T ss_pred             -----hhhHHHHHHHHHHhhcCCCE--EEECCCCCHHHHHHHHHcCCCceeeehHHhhhC-c-HHHHHHHHHHHHHHHHc
Confidence                 00113455666666667999  678999999999999999999999999999842 2 45666777777666666


Q ss_pred             hHHhhhhccCC
Q 037779          280 VLAEVSCGLGE  290 (310)
Q Consensus       280 ~~~~~~~~~~~  290 (310)
                      .+..+.+..|.
T Consensus       294 g~~~i~e~~g~  304 (334)
T PRK07565        294 GYESLQQFRGS  304 (334)
T ss_pred             CCCCHHHHhcc
Confidence            66666666664

>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=99.10  E-value=1.7e-08  Score=89.95  Aligned_cols=158  Identities=16%  Similarity=0.249  Sum_probs=110.2

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc--Ccc-eEeec-cccchHHHHHHHHcCCCeeeec
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV--TIP-VMAKA-RIGHFVEAQILEAIGVDYVDES  121 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~--~lP-v~~kd-~i~~~~~~~~~~~aGad~v~~~  121 (310)
                      +.++++.++|...+ -+       ....    ....+.++++++..  ..| +++.- -+-+.++++.+.++||+++..+
T Consensus        31 ~~~~al~~gGi~~i-Ei-------T~~t----p~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~FiVsP   98 (222)
T PRK07114         31 KVIKACYDGGARVF-EF-------TNRG----DFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFIVTP   98 (222)
T ss_pred             HHHHHHHHCCCCEE-EE-------eCCC----CcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEEECC
Confidence            67999999999987 22       1111    11155666665432  233 33322 2225578899999999999755


Q ss_pred             CCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHh
Q 037779          122 EVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFT  201 (310)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~  201 (310)
                      ..  .+++.+..++  .+++++.++.|+.|+..+.++|+++++++.....                              
T Consensus        99 ~~--~~~v~~~~~~--~~i~~iPG~~TpsEi~~A~~~Ga~~vKlFPA~~~------------------------------  144 (222)
T PRK07114         99 LF--NPDIAKVCNR--RKVPYSPGCGSLSEIGYAEELGCEIVKLFPGSVY------------------------------  144 (222)
T ss_pred             CC--CHHHHHHHHH--cCCCEeCCCCCHHHHHHHHHCCCCEEEECccccc------------------------------
Confidence            32  4677777765  4699999999999999999999999999832111                              


Q ss_pred             hhccCCCcHHHHHHHHh-cCCCCEEEEccCCCCCH--HHHHHHHHcCCCEEEEccccccCC
Q 037779          202 FAKNIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATP--ADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       202 ~~~~~~~~~~l~~~i~~-~~~iPVv~ia~GGI~t~--~di~~~~~~GadgV~VGsai~~~~  259 (310)
                             ....++.++. ..++|+  ++.|||+ +  +++.+++++|+.+|.+||.++..+
T Consensus       145 -------G~~~ikal~~p~p~i~~--~ptGGV~-~~~~n~~~yl~aGa~avg~Gs~L~~~~  195 (222)
T PRK07114        145 -------GPGFVKAIKGPMPWTKI--MPTGGVE-PTEENLKKWFGAGVTCVGMGSKLIPKE  195 (222)
T ss_pred             -------CHHHHHHHhccCCCCeE--EeCCCCC-cchhcHHHHHhCCCEEEEEChhhcCcc
Confidence                   1223344433 245778  6789995 5  899999999999999999998643

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional

Probab=99.09  E-value=1.1e-08  Score=98.43  Aligned_cols=155  Identities=16%  Similarity=0.185  Sum_probs=109.5

Q ss_pred             hHHHHHHHhh-cCcceEeeccccch-HH-HHHHHHcCCCeeeecCCCC---hhHHHHHHHhcCCCCcEEe---ecCCHHH
Q 037779           81 PQLIKQIKSS-VTIPVMAKARIGHF-VE-AQILEAIGVDYVDESEVLT---PADEENHINKHNFRVPFVC---GCRNLGE  151 (310)
Q Consensus        81 ~~~i~~i~~~-~~lPv~~kd~i~~~-~~-~~~~~~aGad~v~~~~~~~---~~~~~~~~~~~~~~l~v~~---~v~t~~e  151 (310)
                      ++.++++++. .+.++.+...+.+. .. ++.+.++|||.+..+...+   +...++.+++.  |+.+++   .++|+.+
T Consensus       214 ~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vTVH~ea~~~ti~~ai~~akk~--GikvgVD~lnp~tp~e  291 (391)
T PRK13307        214 LEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVVISGLAPISTIEKAIHEAQKT--GIYSILDMLNVEDPVK  291 (391)
T ss_pred             HHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCEEEEeccCCHHHHHHHHHHHHHc--CCEEEEEEcCCCCHHH
Confidence            7889999987 67888887665422 22 5677889999987553222   34455555554  455555   4667777


Q ss_pred             HHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccC
Q 037779          152 SLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAG  230 (310)
Q Consensus       152 a~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~G  230 (310)
                      ..+.+..++|++.++.....+.                                ....++.++.+++. .++++  .++|
T Consensus       292 ~i~~l~~~vD~Vllht~vdp~~--------------------------------~~~~~~kI~~ikk~~~~~~I--~VdG  337 (391)
T PRK13307        292 LLESLKVKPDVVELHRGIDEEG--------------------------------TEHAWGNIKEIKKAGGKILV--AVAG  337 (391)
T ss_pred             HHHHhhCCCCEEEEccccCCCc--------------------------------ccchHHHHHHHHHhCCCCcE--EEEC
Confidence            7666688999998862111000                                01234555666653 45677  5689


Q ss_pred             CCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779          231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV  272 (310)
Q Consensus       231 GI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~  272 (310)
                      ||+ ++++.+++++|+|.+++||+|++++||.+.+++|++.+
T Consensus       338 GI~-~eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l~~~i  378 (391)
T PRK13307        338 GVR-VENVEEALKAGADILVVGRAITKSKDVRRAAEDFLNKL  378 (391)
T ss_pred             CcC-HHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHhh
Confidence            995 99999999999999999999999999999999999887

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=99.09  E-value=7.3e-10  Score=104.64  Aligned_cols=181  Identities=23%  Similarity=0.256  Sum_probs=111.1

Q ss_pred             HHHHHHHHcCCcEEEecc-cc-cchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc---chHHHHHHHHcCCCeeee
Q 037779           46 EQARIAEEAGACAVMALE-RV-PADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG---HFVEAQILEAIGVDYVDE  120 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~-~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~---~~~~~~~~~~aGad~v~~  120 (310)
                      ++++.++++|+++| .+| .+ +.+....++.....-.+.++++++.+++||++|....   ..+.++.+.++|||+|..
T Consensus       116 ~~a~~~~~~gad~i-ElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~  194 (325)
T cd04739         116 DYARQIEEAGADAL-ELNIYALPTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPFFSALAHMAKQLDAAGADGLVL  194 (325)
T ss_pred             HHHHHHHhcCCCEE-EEeCCCCCCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCCccCHHHHHHHHHHcCCCeEEE
Confidence            67899999999998 787 43 3333222211000113567888888899999995543   124567778899999874


Q ss_pred             cCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHH
Q 037779          121 SEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVF  200 (310)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~  200 (310)
                      +....             +..  ++..+..           .. . +..+++..                          
T Consensus       195 ~nt~~-------------~~~--id~~~~~-----------~~-~-~~glSG~~--------------------------  220 (325)
T cd04739         195 FNRFY-------------QPD--IDLETLE-----------VV-P-NLLLSSPA--------------------------  220 (325)
T ss_pred             EcCcC-------------CCC--ccccccc-----------ee-c-CCCcCCcc--------------------------
Confidence            33210             000  0000100           00 0 01111110                          


Q ss_pred             hhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChhh
Q 037779          201 TFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDV  280 (310)
Q Consensus       201 ~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~~  280 (310)
                          ......+.+..+.+..++||  |+.|||.|++|+.+.+.+||++|++||+++... | .....+.+.+..+.+...
T Consensus       221 ----~~~~al~~v~~v~~~~~ipI--ig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~g-p-~~~~~i~~~L~~~l~~~g  292 (325)
T cd04739         221 ----EIRLPLRWIAILSGRVKASL--AASGGVHDAEDVVKYLLAGADVVMTTSALLRHG-P-DYIGTLLAGLEAWMEEHG  292 (325)
T ss_pred             ----chhHHHHHHHHHHcccCCCE--EEECCCCCHHHHHHHHHcCCCeeEEehhhhhcC-c-hHHHHHHHHHHHHHHHcC
Confidence                01123556667766668999  678999999999999999999999999999842 2 345666666666666666


Q ss_pred             HHhhhhccC
Q 037779          281 LAEVSCGLG  289 (310)
Q Consensus       281 ~~~~~~~~~  289 (310)
                      +..+.+..|
T Consensus       293 ~~~i~e~~G  301 (325)
T cd04739         293 YESVQQLRG  301 (325)
T ss_pred             CCCHHHHhc
Confidence            666666666

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=99.08  E-value=5.4e-09  Score=97.49  Aligned_cols=178  Identities=15%  Similarity=0.126  Sum_probs=112.2

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccc--cchHHHHHHHH--cCCC
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARI--GHFVEAQILEA--IGVD  116 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i--~~~~~~~~~~~--aGad  116 (310)
                      .+.+.++|..+.+.|.-.++ .+..+.+.+          .+.++.++.....-+.+-..+  .+++.++.+.+  +|+|
T Consensus        56 TV~~~~mA~~la~~g~~~~i-Hk~~~~e~~----------~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~g~D  124 (346)
T PRK05096         56 TVGTFEMAKALASFDILTAV-HKHYSVEEW----------AAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSPALN  124 (346)
T ss_pred             ccccHHHHHHHHHCCCeEEE-ecCCCHHHH----------HHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCCCCC
Confidence            34556999999999887752 111111111          233444443322222222222  24567777777  5999


Q ss_pred             eeeec--CC--CChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEe-cC--CCCCchHHHHHHHHHhhcce
Q 037779          117 YVDES--EV--LTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTK-GE--AGTGNIVEAVRHVRSVMGDI  188 (310)
Q Consensus       117 ~v~~~--~~--~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~-g~--~~~~~~~~~~~~~~~~~~~~  188 (310)
                      +|.++  ..  ....+.++.++++.+++.++++ +-|.+.++..+++|||.++|. |+  .+++..              
T Consensus       125 ~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~--------------  190 (346)
T PRK05096        125 FICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRV--------------  190 (346)
T ss_pred             EEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCcc--------------
Confidence            98732  22  2234566777777788888885 889999999999999999886 44  343321              


Q ss_pred             ecccccCchhHHhhhccCCCc-HHHHHHHH---hcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          189 RVLRNMDDDEVFTFAKNIAAP-YDLVMQTK---QLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       189 ~~l~~~~~d~~~~~~~~~~~~-~~l~~~i~---~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                        ..            +.+.| ...+..+.   ....+||  ||.|||.++-|+.+++.+|||.||+||.|...+
T Consensus       191 --vt------------GvG~PQltAV~~~a~~a~~~gvpi--IADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~  249 (346)
T PRK05096        191 --KT------------GVGYPQLSAVIECADAAHGLGGQI--VSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHE  249 (346)
T ss_pred             --cc------------ccChhHHHHHHHHHHHHHHcCCCE--EecCCcccccHHHHHHHcCCCEEEeChhhcCcc
Confidence              11            11211 11222222   2246899  789999999999999999999999999998865

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=99.08  E-value=3.4e-08  Score=87.65  Aligned_cols=158  Identities=13%  Similarity=0.119  Sum_probs=109.2

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC-cceEeeccccchHHHHHHHHcCCCeeeecCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT-IPVMAKARIGHFVEAQILEAIGVDYVDESEVL  124 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~-lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~~  124 (310)
                      +.++.+.++|.+.| -+       ....    ..-.+.++++++... +-|.+.. +.+.++++.+.++||+++..+.. 
T Consensus        31 ~i~~al~~~Gi~~i-Ei-------tl~~----~~~~~~I~~l~~~~p~~~IGAGT-Vl~~~~a~~a~~aGA~FivsP~~-   96 (212)
T PRK05718         31 PLAKALVAGGLPVL-EV-------TLRT----PAALEAIRLIAKEVPEALIGAGT-VLNPEQLAQAIEAGAQFIVSPGL-   96 (212)
T ss_pred             HHHHHHHHcCCCEE-EE-------ecCC----ccHHHHHHHHHHHCCCCEEEEee-ccCHHHHHHHHHcCCCEEECCCC-
Confidence            67999999999987 22       1100    111567788876653 3332222 23447889999999999975543 


Q ss_pred             ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779          125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK  204 (310)
Q Consensus       125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  204 (310)
                      ++ ++++...+  .+++.+.++.|+.|+..+.+.|+++++++....                                  
T Consensus        97 ~~-~vi~~a~~--~~i~~iPG~~TptEi~~a~~~Ga~~vKlFPa~~----------------------------------  139 (212)
T PRK05718         97 TP-PLLKAAQE--GPIPLIPGVSTPSELMLGMELGLRTFKFFPAEA----------------------------------  139 (212)
T ss_pred             CH-HHHHHHHH--cCCCEeCCCCCHHHHHHHHHCCCCEEEEccchh----------------------------------
Confidence            44 77777765  568888899999999999999999999962110                                  


Q ss_pred             cCCCcHHHHHHHHh-cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          205 NIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       205 ~~~~~~~l~~~i~~-~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                       .+ ....++.++. ..++|+  ++.||| +++++.+++++|+..++.||.++..+
T Consensus       140 -~g-g~~~lk~l~~p~p~~~~--~ptGGV-~~~ni~~~l~ag~v~~vggs~L~~~~  190 (212)
T PRK05718        140 -SG-GVKMLKALAGPFPDVRF--CPTGGI-SPANYRDYLALPNVLCIGGSWMVPKD  190 (212)
T ss_pred             -cc-CHHHHHHHhccCCCCeE--EEeCCC-CHHHHHHHHhCCCEEEEEChHhCCcc
Confidence             00 1233444443 245788  568999 59999999999977777788888643

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=99.05  E-value=1.6e-08  Score=94.36  Aligned_cols=178  Identities=12%  Similarity=0.083  Sum_probs=114.9

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccc--cchHHHHHHHHc--CCC
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARI--GHFVEAQILEAI--GVD  116 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i--~~~~~~~~~~~a--Gad  116 (310)
                      .+.+.++|..+.+.|.-.++ .       |.+. .  ....+.++.+......-+++-..+  .+++.++.+.++  |+|
T Consensus        55 tv~~~~mA~~la~~g~~~~i-H-------k~~~-~--e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~d  123 (343)
T TIGR01305        55 TVGTFEMAAALSQHSIFTAI-H-------KHYS-V--DEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLK  123 (343)
T ss_pred             cccCHHHHHHHHHCCCeEEE-e-------eCCC-H--HHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCCC
Confidence            34556999999999887752 1       2221 0  000222333222222223332222  245778888887  499


Q ss_pred             eeeec--CC--CChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEe-cC--CCCCchHHHHHHHHHhhcce
Q 037779          117 YVDES--EV--LTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTK-GE--AGTGNIVEAVRHVRSVMGDI  188 (310)
Q Consensus       117 ~v~~~--~~--~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~-g~--~~~~~~~~~~~~~~~~~~~~  188 (310)
                      +|.+.  ..  ....+.++.++++.++..++.+ +-|++.++.++++|||.|++. |+  .+++.               
T Consensus       124 ~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSicttR---------------  188 (343)
T TIGR01305       124 FICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTR---------------  188 (343)
T ss_pred             EEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCcccCc---------------
Confidence            98732  22  2234566777777678889998 999999999999999999886 44  34331               


Q ss_pred             ecccccCchhHHhhhccCC-CcHHHHHHHHhc---CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          189 RVLRNMDDDEVFTFAKNIA-APYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       189 ~~l~~~~~d~~~~~~~~~~-~~~~l~~~i~~~---~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                       .+.            +.+ +....+..+.+.   .++||  |+.|||.+..|+.+++.+|||+||+|+.+...+
T Consensus       189 -~~~------------Gvg~pqltAv~~~a~aa~~~~v~V--IaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~  248 (343)
T TIGR01305       189 -TKT------------GVGYPQLSAVIECADAAHGLKGHI--ISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHT  248 (343)
T ss_pred             -eeC------------CCCcCHHHHHHHHHHHhccCCCeE--EEcCCcCchhHHHHHHHcCCCEEEECHhhhCcC
Confidence             111            112 234444544443   26889  679999999999999999999999999887765

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]

Probab=99.03  E-value=3.7e-08  Score=84.44  Aligned_cols=189  Identities=18%  Similarity=0.220  Sum_probs=122.7

Q ss_pred             HHHHHHHHcCCcEEE----ecccccchhhhcCCCCCCCChHHHHHHHhhcCcc--eEeeccccchH-HHHHHHHcCCCee
Q 037779           46 EQARIAEEAGACAVM----ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIP--VMAKARIGHFV-EAQILEAIGVDYV  118 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~----~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lP--v~~kd~i~~~~-~~~~~~~aGad~v  118 (310)
                      +.++++..+|++|++    +.+++|. + .|+       +-.++++|++++.|  +-+.-.+...+ .++....+||+.+
T Consensus        21 ~e~~~~l~~GadwlHlDVMDg~FVpN-i-T~G-------~pvV~slR~~~~~~~ffD~HmMV~~Peq~V~~~a~agas~~   91 (224)
T KOG3111|consen   21 AECKKMLDAGADWLHLDVMDGHFVPN-I-TFG-------PPVVESLRKHTGADPFFDVHMMVENPEQWVDQMAKAGASLF   91 (224)
T ss_pred             HHHHHHHHcCCCeEEEeeecccccCC-c-ccc-------hHHHHHHHhccCCCcceeEEEeecCHHHHHHHHHhcCcceE
Confidence            679999999999983    2225553 2 344       56889999998876  33444444333 3467778999997


Q ss_pred             eec--CCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEE--ecCCCCCchHHHHHHHHHhhcceeccccc
Q 037779          119 DES--EVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRT--KGEAGTGNIVEAVRHVRSVMGDIRVLRNM  194 (310)
Q Consensus       119 ~~~--~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v--~g~~~~~~~~~~~~~~~~~~~~~~~l~~~  194 (310)
                      ..+  ....+.++++.+++.+....+.+...|.-|...-...-.|++-+  -.+++++-                  +.+
T Consensus        92 tfH~E~~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQ------------------kFm  153 (224)
T KOG3111|consen   92 TFHYEATQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQ------------------KFM  153 (224)
T ss_pred             EEEEeeccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCchh------------------hhH
Confidence            632  22357888888888654444444555554444433445566533  24555441                  000


Q ss_pred             CchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779          195 DDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       195 ~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                      + |           -...++++++. .+.-+  =+.||+ +++++.++.++||+.++.||+++++.||.+.++.+++.+.
T Consensus       154 e-~-----------mm~KV~~lR~kyp~l~i--evDGGv-~~~ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~v~  218 (224)
T KOG3111|consen  154 E-D-----------MMPKVEWLREKYPNLDI--EVDGGV-GPSTIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNSVE  218 (224)
T ss_pred             H-H-----------HHHHHHHHHHhCCCceE--EecCCc-CcchHHHHHHcCCCEEEecceeecCCCHHHHHHHHHHHHh
Confidence            0 0           11223344432 22222  258999 5999999999999999999999999999999999998887


Q ss_pred             cCC
Q 037779          274 NYS  276 (310)
Q Consensus       274 ~~~  276 (310)
                      .+.
T Consensus       219 ~a~  221 (224)
T KOG3111|consen  219 KAA  221 (224)
T ss_pred             hhh
Confidence            554

>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family

Probab=99.03  E-value=5.3e-08  Score=88.49  Aligned_cols=189  Identities=21%  Similarity=0.258  Sum_probs=118.2

Q ss_pred             HHHHHHHHcCCcEEEecc--cccchhhhcCCCCCCCC-hHHHHHHHhhcCcceEeeccccch-HHHHHHHHcCCCeeee-
Q 037779           46 EQARIAEEAGACAVMALE--RVPADIRAQGGVARMSD-PQLIKQIKSSVTIPVMAKARIGHF-VEAQILEAIGVDYVDE-  120 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~--~~~~d~r~~~G~~~~~~-~~~i~~i~~~~~lPv~~kd~i~~~-~~~~~~~~aGad~v~~-  120 (310)
                      +.++.|.++|+|+|++-|  ..|-..+  -+...... ...+.+++..+.+|+-++...++. .-+.++.+.|+++|-. 
T Consensus        32 ~ea~~l~~~GvD~viveN~~d~P~~~~--~~p~tva~m~~i~~~v~~~~~~p~GvnvL~nd~~aal~iA~a~ga~FIRv~  109 (257)
T TIGR00259        32 KDAMALEEGGVDAVMFENFFDAPFLKE--VDPETVAAMAVIAGQLKSDVSIPLGINVLRNDAVAALAIAMAVGAKFIRVN  109 (257)
T ss_pred             HHHHHHHhCCCCEEEEecCCCCCCcCC--CCHHHHHHHHHHHHHHHHhcCCCeeeeeecCCCHHHHHHHHHhCCCEEEEc
Confidence            679999999999996655  2221000  00000000 223456777788898776555332 3456777899999752 


Q ss_pred             ----c---CC----CChhHHHHHHHhcCCCCcEEeecC----------CHHHH-HHHHHhC-CCEEEEecCCCCCchHHH
Q 037779          121 ----S---EV----LTPADEENHINKHNFRVPFVCGCR----------NLGES-LRRIREG-AAMIRTKGEAGTGNIVEA  177 (310)
Q Consensus       121 ----~---~~----~~~~~~~~~~~~~~~~l~v~~~v~----------t~~ea-~~a~~~G-ad~I~v~g~~~~~~~~~~  177 (310)
                          +   +.    ....++.++-+..+.++.++.+++          +.+|. +.+...+ +|.+.+.|...+      
T Consensus       110 ~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~~~~aDavivtG~~TG------  183 (257)
T TIGR00259       110 VLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRDLESIALDTVERGLADAVILSGKTTG------  183 (257)
T ss_pred             cEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCCHHHHHHHHHHhcCCCEEEECcCCCC------
Confidence                1   11    122344444444344566666653          44443 3444444 898888765322      


Q ss_pred             HHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc
Q 037779          178 VRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF  256 (310)
Q Consensus       178 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~  256 (310)
                                                  ...+++.++.+++. .++|+  +.+||+ +++++.++++. +||+.|||.|-
T Consensus       184 ----------------------------~~~d~~~l~~vr~~~~~~Pv--llggGv-t~eNv~e~l~~-adGviVgS~~K  231 (257)
T TIGR00259       184 ----------------------------TEVDLELLKLAKETVKDTPV--LAGSGV-NLENVEELLSI-ADGVIVATTIK  231 (257)
T ss_pred             ----------------------------CCCCHHHHHHHHhccCCCeE--EEECCC-CHHHHHHHHhh-CCEEEECCCcc
Confidence                                        23467888888763 46898  569999 69999999998 99999999997


Q ss_pred             cCCC-----HHHHHHHHHHHHHc
Q 037779          257 KSGD-----PVRRARAIVQAVTN  274 (310)
Q Consensus       257 ~~~d-----p~~~~~~~~~~~~~  274 (310)
                      +..+     -.+++++|.+.++.
T Consensus       232 ~~G~~~n~~D~~rV~~Fm~~v~~  254 (257)
T TIGR00259       232 KDGVFNNFVDQARVSQFVEKVAH  254 (257)
T ss_pred             cCCccCCCcCHHHHHHHHHHHHH
Confidence            6442     24678888887764

Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=99.02  E-value=1.2e-08  Score=97.54  Aligned_cols=144  Identities=25%  Similarity=0.398  Sum_probs=94.6

Q ss_pred             HHHHHHHhhcCcceEeecccc---chHHHHHHHHcCCCeeeec----------CCCChhHHHHHHHhcCCCCcEEe-ecC
Q 037779           82 QLIKQIKSSVTIPVMAKARIG---HFVEAQILEAIGVDYVDES----------EVLTPADEENHINKHNFRVPFVC-GCR  147 (310)
Q Consensus        82 ~~i~~i~~~~~lPv~~kd~i~---~~~~~~~~~~aGad~v~~~----------~~~~~~~~~~~~~~~~~~l~v~~-~v~  147 (310)
                      +.++++++..   +.++.++.   ..+.++.+.++|+|.+.++          ..-.+.++.+.++.  .++++++ ++.
T Consensus       123 ~ii~~vr~a~---VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~--~~IPVI~G~V~  197 (369)
T TIGR01304       123 ERIAEVRDSG---VITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGE--LDVPVIAGGVN  197 (369)
T ss_pred             HHHHHHHhcc---eEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHH--CCCCEEEeCCC
Confidence            3456666543   66776664   2366789999999998743          11235555555544  4688887 799


Q ss_pred             CHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCc-HHHHHH--------HHh
Q 037779          148 NLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAP-YDLVMQ--------TKQ  218 (310)
Q Consensus       148 t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~-~~l~~~--------i~~  218 (310)
                      |.++++++.+.|||.|.+ |+..+....             ..+             +...+ .+.+..        +.+
T Consensus       198 t~e~A~~~~~aGaDgV~~-G~gg~~~~~-------------~~l-------------g~~~p~~~ai~d~~~a~~~~~~e  250 (369)
T TIGR01304       198 DYTTALHLMRTGAAGVIV-GPGGANTTR-------------LVL-------------GIEVPMATAIADVAAARRDYLDE  250 (369)
T ss_pred             CHHHHHHHHHcCCCEEEE-CCCCCcccc-------------ccc-------------CCCCCHHHHHHHHHHHHHHHHHh
Confidence            999999999999999874 332221100             000             00111 112222        122


Q ss_pred             cC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          219 LG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       219 ~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                      ..  .+||  ||+|||.++.|+.+++.+|||+|++|++|..+.
T Consensus       251 ~g~r~vpV--IAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~  291 (369)
T TIGR01304       251 TGGRYVHV--IADGGIETSGDLVKAIACGADAVVLGSPLARAA  291 (369)
T ss_pred             cCCCCceE--EEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhh
Confidence            21  3788  789999999999999999999999999999854

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.01  E-value=3.6e-09  Score=104.49  Aligned_cols=126  Identities=20%  Similarity=0.276  Sum_probs=94.4

Q ss_pred             HHHHHHHHcCCCeeeec----CCCChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEe-cC--CCCCchHH
Q 037779          105 VEAQILEAIGVDYVDES----EVLTPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTK-GE--AGTGNIVE  176 (310)
Q Consensus       105 ~~~~~~~~aGad~v~~~----~~~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~-g~--~~~~~~~~  176 (310)
                      +.++.+.+.|++.|...    ......+.++.++++.+++.+++ ++.|.++++.++++|+|+|++. |+  .+|..   
T Consensus       230 ~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~---  306 (479)
T PRK07807        230 AKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTR---  306 (479)
T ss_pred             HHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccc---
Confidence            56678888999998732    22345677888888778899999 7999999999999999999875 33  33321   


Q ss_pred             HHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHh---cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779          177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQ---LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       177 ~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~---~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs  253 (310)
                                   ......           .+.+..+..+.+   ..++||  ||+|||+++.|+.+++.+||++|++|+
T Consensus       307 -------------~~~~~~-----------~p~~~av~~~~~~~~~~~~~v--ia~ggi~~~~~~~~al~~ga~~v~~g~  360 (479)
T PRK07807        307 -------------MMTGVG-----------RPQFSAVLECAAAARELGAHV--WADGGVRHPRDVALALAAGASNVMIGS  360 (479)
T ss_pred             -------------cccCCc-----------hhHHHHHHHHHHHHHhcCCcE--EecCCCCCHHHHHHHHHcCCCeeeccH
Confidence                         111100           123455555554   246899  789999999999999999999999999


Q ss_pred             ccccCC
Q 037779          254 GVFKSG  259 (310)
Q Consensus       254 ai~~~~  259 (310)
                      .|..++
T Consensus       361 ~~ag~~  366 (479)
T PRK07807        361 WFAGTY  366 (479)
T ss_pred             hhccCc
Confidence            999865

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=98.99  E-value=1.1e-08  Score=95.67  Aligned_cols=158  Identities=26%  Similarity=0.299  Sum_probs=98.2

Q ss_pred             HHHHHHHHcCCcEEEecc-cccchh-hhcCCCCCCCChHHHH----HHHhhcCcceEeeccccc---hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALE-RVPADI-RAQGGVARMSDPQLIK----QIKSSVTIPVMAKARIGH---FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~~d~-r~~~G~~~~~~~~~i~----~i~~~~~lPv~~kd~i~~---~~~~~~~~~aGad  116 (310)
                      +.++.+++.|+++| .+| .||.-. +...|+..+.+++.+.    .+++.+++||++|...+.   .+.++.+.++|+|
T Consensus       117 ~~a~~~~~~gad~i-elN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~~~~~~~a~~~~~~Gad  195 (299)
T cd02940         117 ELAKLVEEAGADAL-ELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPNITDIREIARAAKEGGAD  195 (299)
T ss_pred             HHHHHHHhcCCCEE-EEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCCchhHHHHHHHHHHcCCC
Confidence            56888888899998 888 555432 1223555566666655    455667899999966532   2456778889999


Q ss_pred             eeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecC----CCCCchHHHHHHHHHhhcceeccc
Q 037779          117 YVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGE----AGTGNIVEAVRHVRSVMGDIRVLR  192 (310)
Q Consensus       117 ~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~----~~~~~~~~~~~~~~~~~~~~~~l~  192 (310)
                      .|.........              ...+.++.          .-...+++.    .+++.                   
T Consensus       196 gi~~~Nt~~~~--------------~~id~~~~----------~~~~~~~~~~~~gg~sG~-------------------  232 (299)
T cd02940         196 GVSAINTVNSL--------------MGVDLDGT----------PPAPGVEGKTTYGGYSGP-------------------  232 (299)
T ss_pred             EEEEecccccc--------------cccccccC----------CccccccCCCCcCcccCC-------------------
Confidence            98733221100              00010000          000011111    11110                   


Q ss_pred             ccCchhHHhhhccCCCcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc-CCC
Q 037779          193 NMDDDEVFTFAKNIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK-SGD  260 (310)
Q Consensus       193 ~~~~d~~~~~~~~~~~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~-~~d  260 (310)
                                 ......++.+.++++..  ++||  |+.|||.+.+|+.+++.+||++|++||+++. .++
T Consensus       233 -----------a~~p~~l~~v~~~~~~~~~~ipI--ig~GGI~~~~da~~~l~aGA~~V~i~ta~~~~g~~  290 (299)
T cd02940         233 -----------AVKPIALRAVSQIARAPEPGLPI--SGIGGIESWEDAAEFLLLGASVVQVCTAVMNQGFT  290 (299)
T ss_pred             -----------CcchHHHHHHHHHHHhcCCCCcE--EEECCCCCHHHHHHHHHcCCChheEceeecccCCc
Confidence                       00122477788888766  7999  6789999999999999999999999999888 443

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5

Probab=98.99  E-value=7.5e-09  Score=91.17  Aligned_cols=174  Identities=20%  Similarity=0.268  Sum_probs=109.8

Q ss_pred             HHHHHHHHHcCCcEEE----ecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccch-HHHHHHHHcCCCeee
Q 037779           45 PEQARIAEEAGACAVM----ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHF-VEAQILEAIGVDYVD  119 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~----~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~-~~~~~~~~aGad~v~  119 (310)
                      .+.++.+.++|+++++    +.+++|. . .|+       ++.++++++.+++|+-++-.+.+. ..++.+..+|++.|.
T Consensus        15 ~~~i~~l~~~g~d~lHiDiMDg~fvpn-~-~~g-------~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~   85 (201)
T PF00834_consen   15 EEEIKRLEEAGADWLHIDIMDGHFVPN-L-TFG-------PDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAGADYIT   85 (201)
T ss_dssp             HHHHHHHHHTT-SEEEEEEEBSSSSSS-B--B--------HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT-SEEE
T ss_pred             HHHHHHHHHcCCCEEEEeecccccCCc-c-cCC-------HHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcCCCEEE
Confidence            3789999999999973    3335553 1 243       889999999999999998877643 456888999999987


Q ss_pred             ec--CCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEe--cCCCCCc--hHHHHHHHHHhhcceecccc
Q 037779          120 ES--EVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTK--GEAGTGN--IVEAVRHVRSVMGDIRVLRN  193 (310)
Q Consensus       120 ~~--~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~--g~~~~~~--~~~~~~~~~~~~~~~~~l~~  193 (310)
                      .+  ....+.++++.+++++....+.+...|+-+...-.-.-.|+|.+.  .++++|-  ..++++.+            
T Consensus        86 ~H~E~~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI------------  153 (201)
T PF00834_consen   86 FHAEATEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGGQKFIPEVLEKI------------  153 (201)
T ss_dssp             EEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB--HGGHHHHH------------
T ss_pred             EcccchhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCcccccHHHHHHH------------
Confidence            43  333567788888887665666666666555433333367887654  3344331  11111111            


Q ss_pred             cCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          194 MDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       194 ~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                                      .++.+.+.+. .++.+  -+.||| +.+++.++.++|||.+++||+++++
T Consensus       154 ----------------~~l~~~~~~~~~~~~I--~vDGGI-~~~~~~~~~~aGad~~V~Gs~iF~~  200 (201)
T PF00834_consen  154 ----------------RELRKLIPENGLDFEI--EVDGGI-NEENIKQLVEAGADIFVAGSAIFKA  200 (201)
T ss_dssp             ----------------HHHHHHHHHHTCGSEE--EEESSE-STTTHHHHHHHT--EEEESHHHHTS
T ss_pred             ----------------HHHHHHHHhcCCceEE--EEECCC-CHHHHHHHHHcCCCEEEECHHHhCC
Confidence                            1122222221 23455  568999 5899999999999999999999985

1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=98.98  E-value=4.1e-09  Score=102.93  Aligned_cols=185  Identities=22%  Similarity=0.268  Sum_probs=110.6

Q ss_pred             HHHHHHHHcCCcEEEecc-cccc-hhhhcCCCCCCCChHHHH----HHHhhcCcceEeeccccc---hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALE-RVPA-DIRAQGGVARMSDPQLIK----QIKSSVTIPVMAKARIGH---FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~~-d~r~~~G~~~~~~~~~i~----~i~~~~~lPv~~kd~i~~---~~~~~~~~~aGad  116 (310)
                      ++++.+++.|+++| .|| .+|. ......|.....+++.+.    .+++.+++||++|..-..   .+.++.+.++|||
T Consensus       117 ~~a~~~~~~g~d~i-elN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~~~~~~a~~~~~~Gad  195 (420)
T PRK08318        117 EIAPLVEETGADGI-ELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPNITDIREPARAAKRGGAD  195 (420)
T ss_pred             HHHHHHHhcCCCEE-EEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCCCcccHHHHHHHHHHCCCC
Confidence            67889999999998 899 5554 221223455566677654    455567899999966532   2456778889999


Q ss_pred             eeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecC----CCCCchHHHHHHHHHhhcceeccc
Q 037779          117 YVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGE----AGTGNIVEAVRHVRSVMGDIRVLR  192 (310)
Q Consensus       117 ~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~----~~~~~~~~~~~~~~~~~~~~~~l~  192 (310)
                      .+..........              .+++.+..        +.-  .+++.    .++|.                   
T Consensus       196 gi~~~Nt~~~~~--------------~id~~~~~--------~~p--~~~~~~~~gg~SG~-------------------  232 (420)
T PRK08318        196 AVSLINTINSIT--------------GVDLDRMI--------PMP--IVNGKSSHGGYCGP-------------------  232 (420)
T ss_pred             EEEEecccCccc--------------cccccccC--------CCc--eecCCCCcccccch-------------------
Confidence            987322211000              00111000        000  01111    11111                   


Q ss_pred             ccCchhHHhhhccCCCcHHHHHHHHhcC---CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 037779          193 NMDDDEVFTFAKNIAAPYDLVMQTKQLG---RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV  269 (310)
Q Consensus       193 ~~~~d~~~~~~~~~~~~~~l~~~i~~~~---~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~  269 (310)
                           .      .....++.+..+.+..   ++||  |+.|||.|.+|+.+.+.+||++|++||+++..+  ...++.+.
T Consensus       233 -----a------~~p~~l~~v~~~~~~~~~~~ipI--ig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~g--p~ii~~I~  297 (420)
T PRK08318        233 -----A------VKPIALNMVAEIARDPETRGLPI--SGIGGIETWRDAAEFILLGAGTVQVCTAAMQYG--FRIVEDMI  297 (420)
T ss_pred             -----h------hhHHHHHHHHHHHhccccCCCCE--EeecCcCCHHHHHHHHHhCCChheeeeeeccCC--chhHHHHH
Confidence                 0      0112467777777754   7899  678999999999999999999999999999722  23455566


Q ss_pred             HHHHcCCChhhHHhhhhccC
Q 037779          270 QAVTNYSDPDVLAEVSCGLG  289 (310)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~  289 (310)
                      ..+..+.....+..+.+..|
T Consensus       298 ~~L~~~l~~~g~~si~e~iG  317 (420)
T PRK08318        298 SGLSHYMDEKGFASLEDMVG  317 (420)
T ss_pred             HHHHHHHHHcCcchHHHHhc
Confidence            65555444444444444444

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=98.98  E-value=1.6e-08  Score=94.30  Aligned_cols=75  Identities=19%  Similarity=0.406  Sum_probs=58.8

Q ss_pred             HHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChhhHHhhhhccC
Q 037779          210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLG  289 (310)
Q Consensus       210 ~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (310)
                      .+.+.++++..++||  |+.|||.+++++.+++++|||+|++|++++..++   ..+.+.+.+..+.....+..+.+..|
T Consensus       223 l~~v~~i~~~~~ipv--i~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~---~~~~i~~~l~~~~~~~g~~~~~e~~g  297 (300)
T TIGR01037       223 LRMVYDVYKMVDIPI--IGVGGITSFEDALEFLMAGASAVQVGTAVYYRGF---AFKKIIEGLIAFLKAEGFTSIEELIG  297 (300)
T ss_pred             HHHHHHHHhcCCCCE--EEECCCCCHHHHHHHHHcCCCceeecHHHhcCch---HHHHHHHHHHHHHHHcCCCCHHHHhC
Confidence            466777777778999  6789999999999999999999999999998654   45666666666666666666655544

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=98.98  E-value=1.2e-07  Score=87.25  Aligned_cols=69  Identities=29%  Similarity=0.361  Sum_probs=54.5

Q ss_pred             HHHHHHHhcCCCCEEEEccCCCC--CHHHHHH----HHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChhhH
Q 037779          211 DLVMQTKQLGRLPVVHFAAGGVA--TPADAAM----MMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVL  281 (310)
Q Consensus       211 ~l~~~i~~~~~iPVv~ia~GGI~--t~~di~~----~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~~~  281 (310)
                      +.++.+.+..++||  +++|||+  |.+++.+    ++++||+|+.+|+.|++.+||.+++++|...++....+.-.
T Consensus       186 ~~l~~~~~~~~ipV--~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~~~~~l~~~v~~~~~~~ea  260 (267)
T PRK07226        186 ESFREVVEGCPVPV--VIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEAITRAISAVVHEGASVEEA  260 (267)
T ss_pred             HHHHHHHHhCCCCE--EEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHHHHHHHHHHHhCCCCHHHH
Confidence            44555555457899  4679998  6665544    45999999999999999999999999999999887765433

>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD

Probab=98.97  E-value=5e-08  Score=94.31  Aligned_cols=181  Identities=19%  Similarity=0.176  Sum_probs=110.3

Q ss_pred             Cccc-cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhh-c-CcceEeeccccc------hHHH
Q 037779           37 GVIM-DVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSS-V-TIPVMAKARIGH------FVEA  107 (310)
Q Consensus        37 g~i~-~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~-~-~lPv~~kd~i~~------~~~~  107 (310)
                      |.|- .+.+++++.++.++|.-++.-....+.+.          --+.|+++++. + +.|+-++.+...      .+.+
T Consensus        19 gpMa~Giss~eLVaAvs~AGgLG~lgag~l~~e~----------l~~~I~~ir~~lt~~~PfGVNL~~~~~~~~~e~~~v   88 (418)
T cd04742          19 GAMARGIASAELVVAMGKAGMLGFFGAGGLPLDE----------VEQAIERIQAALGNGEPYGVNLIHSPDEPELEEGLV   88 (418)
T ss_pred             CcccCCCCCHHHHHHHHhCCCeeeecCCCCCHHH----------HHHHHHHHHHhccCCCCeEEeeecCCCCchhHHHHH
Confidence            4444 57889999999999988752110111100          02345677764 5 789888866521      1346


Q ss_pred             HHHHHcCCCeeeecCCCChhHHHHHHHhcCCC----------CcEEeecC--------------------------CHHH
Q 037779          108 QILEAIGVDYVDESEVLTPADEENHINKHNFR----------VPFVCGCR--------------------------NLGE  151 (310)
Q Consensus       108 ~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~----------l~v~~~v~--------------------------t~~e  151 (310)
                      +.+.+.|+..|..+..+.+......++.++..          ..++..+.                          |.+|
T Consensus        89 ~l~le~gV~~ve~sa~~~~~p~~~~~r~~G~~~~~~g~~~~~~~ViakVsr~evAs~~f~ppp~~~v~~L~~~G~it~~e  168 (418)
T cd04742          89 DLFLRHGVRVVEASAFMQLTPALVRYRAKGLRRDADGRVQIANRIIAKVSRPEVAEAFMSPAPERILKKLLAEGKITEEQ  168 (418)
T ss_pred             HHHHHcCCCEEEeccccCCCcchhhHHhcCCcccccccccccceEEEecCChhhhhhhcCCCCHHHHHHHHHcCCCCHHH
Confidence            77888999988644322221111233333221          12444443                          6778


Q ss_pred             HHHHHHhC-CCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHh---c--------
Q 037779          152 SLRRIREG-AAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQ---L--------  219 (310)
Q Consensus       152 a~~a~~~G-ad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~---~--------  219 (310)
                      ++.+.+.| +|.|.+....+ ||.                              +......+++.+.+   .        
T Consensus       169 A~~A~~~g~aD~Ivvq~EAG-GH~------------------------------g~~~~~~Llp~v~~l~d~v~~~~~~~  217 (418)
T cd04742         169 AELARRVPVADDITVEADSG-GHT------------------------------DNRPLSVLLPTIIRLRDELAARYGYR  217 (418)
T ss_pred             HHHHHhCCCCCEEEEcccCC-CCC------------------------------CCccHHhHHHHHHHHHHHHhhccccC
Confidence            88888888 59998874333 331                              00112223333322   1        


Q ss_pred             CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779          220 GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD  260 (310)
Q Consensus       220 ~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d  260 (310)
                      .++||  +++|||.|++++..++.+||++|.+||.+.-+..
T Consensus       218 ~~ipV--iAAGGI~tg~~vaAA~alGAd~V~~GT~flat~E  256 (418)
T cd04742         218 RPIRV--GAAGGIGTPEAAAAAFALGADFIVTGSINQCTVE  256 (418)
T ss_pred             CCceE--EEECCCCCHHHHHHHHHcCCcEEeeccHHHhCcc
Confidence            15788  7899999999999999999999999999988653

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]

Probab=98.97  E-value=9e-08  Score=83.92  Aligned_cols=156  Identities=16%  Similarity=0.217  Sum_probs=109.5

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccc-cchHHHHHHHHcCCCeeeecCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARI-GHFVEAQILEAIGVDYVDESEVL  124 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i-~~~~~~~~~~~aGad~v~~~~~~  124 (310)
                      .+++++.++|.+.| -+       ....    ..-.+.|+.+++.+. -+++.-.. -+.++++.+.++|++++..+.. 
T Consensus        29 ~~a~Ali~gGi~~I-EI-------Tl~s----p~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~-   94 (211)
T COG0800          29 PLAKALIEGGIPAI-EI-------TLRT----PAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPGL-   94 (211)
T ss_pred             HHHHHHHHcCCCeE-EE-------ecCC----CCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCCC-
Confidence            56999999999998 22       1111    111567777777765 34443222 2557888999999999975443 


Q ss_pred             ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecC-CCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779          125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGE-AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA  203 (310)
Q Consensus       125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  203 (310)
                       .+++++....  .+++++.++.|+.|+..+.+.|++.++++.- ..++                               
T Consensus        95 -~~ev~~~a~~--~~ip~~PG~~TptEi~~Ale~G~~~lK~FPa~~~Gg-------------------------------  140 (211)
T COG0800          95 -NPEVAKAANR--YGIPYIPGVATPTEIMAALELGASALKFFPAEVVGG-------------------------------  140 (211)
T ss_pred             -CHHHHHHHHh--CCCcccCCCCCHHHHHHHHHcChhheeecCccccCc-------------------------------
Confidence             3566666654  5699999999999999999999999998722 2211                               


Q ss_pred             ccCCCcHHHHHHHHh-cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          204 KNIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       204 ~~~~~~~~l~~~i~~-~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                            ..+++.++- ..++++  +..||| +++|+..++.+|+.+|.+||.++..
T Consensus       141 ------~~~~ka~~gP~~~v~~--~pTGGV-s~~N~~~yla~gv~avG~Gs~l~~~  187 (211)
T COG0800         141 ------PAMLKALAGPFPQVRF--CPTGGV-SLDNAADYLAAGVVAVGLGSWLVPK  187 (211)
T ss_pred             ------HHHHHHHcCCCCCCeE--eecCCC-CHHHHHHHHhCCceEEecCccccCh
Confidence                  112222222 124566  567999 5999999999999999999999964

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=98.96  E-value=5.2e-08  Score=89.13  Aligned_cols=194  Identities=21%  Similarity=0.241  Sum_probs=116.4

Q ss_pred             ccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeec--cc--c
Q 037779           28 VGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKA--RI--G  102 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd--~i--~  102 (310)
                      +++..-|..|......++ +.++.+.++|++++ .++     +. .        ....... ...+++++...  ..  +
T Consensus        21 ~aiDh~~l~gp~~~~~~~~~~~~~a~~~~~~~v-~~~-----p~-~--------~~~~~~~-~~~~~~~~~~~~~~~~~g   84 (258)
T TIGR01949        21 VPMDHGVSNGPIKGLVDIRKTVNEVAEGGADAV-LLH-----KG-I--------VRRGHRG-YGKDVGLIIHLSASTSLS   84 (258)
T ss_pred             EECCCccccCCCCCcCCHHHHHHHHHhcCCCEE-EeC-----cc-h--------hhhcccc-cCCCCcEEEEEcCCCCCC
Confidence            444444444544444554 57999999999998 332     10 0        1111111 12344444432  11  1


Q ss_pred             -------chHHHHHHHHcCCCeeeec-C--CCChhHHHHHH---Hh--cCCCCcEEeec---------CC---HHH-HHH
Q 037779          103 -------HFVEAQILEAIGVDYVDES-E--VLTPADEENHI---NK--HNFRVPFVCGC---------RN---LGE-SLR  154 (310)
Q Consensus       103 -------~~~~~~~~~~aGad~v~~~-~--~~~~~~~~~~~---~~--~~~~l~v~~~v---------~t---~~e-a~~  154 (310)
                             ....++.+.+.||+.|... .  ..+..+..+.+   .+  +..++++++..         .+   ..+ ++.
T Consensus        85 ~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~  164 (258)
T TIGR01949        85 PDPNDKRIVTTVEDAIRMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARL  164 (258)
T ss_pred             CCCCcceeeeeHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHH
Confidence                   1134677888999987622 1  11112222222   22  23455555421         12   223 345


Q ss_pred             HHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCC-
Q 037779          155 RIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVA-  233 (310)
Q Consensus       155 a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~-  233 (310)
                      +.+.|+|||++.   +.                                    .+.+.++.+.+..++||+  +.|||+ 
T Consensus       165 a~~~GADyikt~---~~------------------------------------~~~~~l~~~~~~~~iPVv--a~GGi~~  203 (258)
T TIGR01949       165 GAELGADIVKTP---YT------------------------------------GDIDSFRDVVKGCPAPVV--VAGGPKT  203 (258)
T ss_pred             HHHHCCCEEecc---CC------------------------------------CCHHHHHHHHHhCCCcEE--EecCCCC
Confidence            567899999874   11                                    124456666665678995  469997 


Q ss_pred             -C----HHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCCh
Q 037779          234 -T----PADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDP  278 (310)
Q Consensus       234 -t----~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~  278 (310)
                       |    .+++.+++++|++|+.+|+.|++++||.+++++|+..++....+
T Consensus       204 ~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp~~~~~~l~~~i~~~~~~  253 (258)
T TIGR01949       204 NSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDPVGITKAVCKIVHENADV  253 (258)
T ss_pred             CCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCHHHHHHHHHHHHhCCCCH
Confidence             4    66778888999999999999999999999999999999877654

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=98.96  E-value=6.9e-08  Score=90.21  Aligned_cols=165  Identities=19%  Similarity=0.213  Sum_probs=110.0

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc-ch----HHHHHHHHcCCCeee
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG-HF----VEAQILEAIGVDYVD  119 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~-~~----~~~~~~~~aGad~v~  119 (310)
                      ..+++.+.+.|+...  +    ....       ...++.+++.   ..-|+.++.+.. +.    +.++.+.+.|++.+.
T Consensus        84 ~~la~aa~~~g~~~~--~----~~~~-------~~~~~~i~~~---~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~  147 (299)
T cd02809          84 LATARAAAAAGIPFT--L----STVS-------TTSLEEVAAA---APGPRWFQLYVPRDREITEDLLRRAEAAGYKALV  147 (299)
T ss_pred             HHHHHHHHHcCCCEE--e----cCCC-------cCCHHHHHHh---cCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEE
Confidence            578999999998764  1    1111       1125555444   336777776543 21    244566778999987


Q ss_pred             ecCCCCh------hHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceeccc
Q 037779          120 ESEVLTP------ADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLR  192 (310)
Q Consensus       120 ~~~~~~~------~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~  192 (310)
                      .+-..+.      .+.++.++++ .++++++. +.+.++++++.+.|+|+|.+++..+..                  +.
T Consensus       148 l~~~~p~~~~~~~~~~i~~l~~~-~~~pvivK~v~s~~~a~~a~~~G~d~I~v~~~gG~~------------------~~  208 (299)
T cd02809         148 LTVDTPVLGRRLTWDDLAWLRSQ-WKGPLILKGILTPEDALRAVDAGADGIVVSNHGGRQ------------------LD  208 (299)
T ss_pred             EecCCCCCCCCCCHHHHHHHHHh-cCCCEEEeecCCHHHHHHHHHCCCCEEEEcCCCCCC------------------CC
Confidence            4322122      2556666553 34666654 789999999999999999997543210                  00


Q ss_pred             ccCchhHHhhhccCCCcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          193 NMDDDEVFTFAKNIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       193 ~~~~d~~~~~~~~~~~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      .            -..+++.+..+.+..  ++||  |++|||.++.|+.+++.+|||+|++|+.++.+
T Consensus       209 ~------------g~~~~~~l~~i~~~~~~~ipv--ia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~  262 (299)
T cd02809         209 G------------APATIDALPEIVAAVGGRIEV--LLDGGIRRGTDVLKALALGADAVLIGRPFLYG  262 (299)
T ss_pred             C------------CcCHHHHHHHHHHHhcCCCeE--EEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Confidence            0            123566777776543  5898  78999999999999999999999999988864

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae

Probab=98.96  E-value=8.8e-08  Score=83.68  Aligned_cols=185  Identities=23%  Similarity=0.268  Sum_probs=119.7

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec----
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES----  121 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~----  121 (310)
                      .++++...+||+.+ +       +.+        ++++++.++..+++||.+...  ..+..-.+..+|||.|-+-    
T Consensus        31 ~i~~AA~~ggAt~v-D-------IAa--------dp~LV~~~~~~s~lPICVSaV--ep~~f~~aV~AGAdliEIGNfDs   92 (242)
T PF04481_consen   31 AIVKAAEIGGATFV-D-------IAA--------DPELVKLAKSLSNLPICVSAV--EPELFVAAVKAGADLIEIGNFDS   92 (242)
T ss_pred             HHHHHHHccCCceE-E-------ecC--------CHHHHHHHHHhCCCCeEeecC--CHHHHHHHHHhCCCEEEecchHH
Confidence            67899999999987 3       432        389999999999999988644  2345556778999998732    


Q ss_pred             -----CCCChhHHHHHHHh---cCCCCcEEeec-CCHH---H---HHHHHHhCCCEEEEecCCCC-CchHHHHHHHHHhh
Q 037779          122 -----EVLTPADEENHINK---HNFRVPFVCGC-RNLG---E---SLRRIREGAAMIRTKGEAGT-GNIVEAVRHVRSVM  185 (310)
Q Consensus       122 -----~~~~~~~~~~~~~~---~~~~l~v~~~v-~t~~---e---a~~a~~~Gad~I~v~g~~~~-~~~~~~~~~~~~~~  185 (310)
                           ..++.+++....++   .-++.++-+.+ |++.   +   +....+.|+|+|-+.|-.-. +.....+       
T Consensus        93 FY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTEGgtss~p~~~g~l-------  165 (242)
T PF04481_consen   93 FYAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTEGGTSSKPTSPGIL-------  165 (242)
T ss_pred             HHhcCCeecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEcCCCCCCCCCCcchH-------
Confidence                 12344455444433   33565555543 4322   2   33445689999987643111 1000000       


Q ss_pred             cceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHH
Q 037779          186 GDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRA  265 (310)
Q Consensus       186 ~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~  265 (310)
                                  ++++.+   .+...-...+.+..++||  ++++|| |.-.+..++.+||.||.|||++-+-.|...|.
T Consensus       166 ------------glIeka---apTLAaay~ISr~v~iPV--lcASGl-S~vT~PmAiaaGAsGVGVGSavn~Ln~~~aMv  227 (242)
T PF04481_consen  166 ------------GLIEKA---APTLAAAYAISRAVSIPV--LCASGL-SAVTAPMAIAAGASGVGVGSAVNRLNDEVAMV  227 (242)
T ss_pred             ------------HHHHHH---hHHHHHHHHHHhccCCce--EeccCc-chhhHHHHHHcCCcccchhHHhhhcccHHHHH
Confidence                        000000   112334455666678999  679999 57899999999999999999999999988776


Q ss_pred             HHHHHHHH
Q 037779          266 RAIVQAVT  273 (310)
Q Consensus       266 ~~~~~~~~  273 (310)
                      ...++..+
T Consensus       228 a~vr~l~~  235 (242)
T PF04481_consen  228 AAVRSLVE  235 (242)
T ss_pred             HHHHHHHH
Confidence            65555443

As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.

>cd02911 arch_FMN Archeal FMN-binding domain

Probab=98.95  E-value=2.3e-08  Score=90.14  Aligned_cols=128  Identities=21%  Similarity=0.273  Sum_probs=81.1

Q ss_pred             HHHHHHHHcCCcEEEecc-cccch--hhhcCCCCCCCChHHHHHHHhh---cCcceEeeccccchHHHHHHHHcCCCeee
Q 037779           46 EQARIAEEAGACAVMALE-RVPAD--IRAQGGVARMSDPQLIKQIKSS---VTIPVMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~~d--~r~~~G~~~~~~~~~i~~i~~~---~~lPv~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      +.++.+.+ +++.| +|| .||..  .+...|+.++.+++.+.++.+.   .++||++|.+.++.               
T Consensus        89 ~aa~~~~~-~~~~i-elN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~pVsvKir~g~~---------------  151 (233)
T cd02911          89 NAAALVAK-NAAIL-EINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGVPVSVKIRAGVD---------------  151 (233)
T ss_pred             HHHHHHhh-cCCEE-EEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCCCEEEEEcCCcC---------------
Confidence            44666666 46776 898 55543  2333478888888776554322   58999999876520               


Q ss_pred             ecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhH
Q 037779          120 ESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEV  199 (310)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  199 (310)
                             .+                   +.+-++.+.+.|+|++-+... +.+                           
T Consensus       152 -------~~-------------------~~~la~~l~~aG~d~ihv~~~-~~g---------------------------  177 (233)
T cd02911         152 -------VD-------------------DEELARLIEKAGADIIHVDAM-DPG---------------------------  177 (233)
T ss_pred             -------cC-------------------HHHHHHHHHHhCCCEEEECcC-CCC---------------------------
Confidence                   00                   011122333456665433210 100                           


Q ss_pred             HhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccc
Q 037779          200 FTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG  254 (310)
Q Consensus       200 ~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsa  254 (310)
                            ...+++.++.++  .++||  |++|||.|++++.+++++|||+|++|++
T Consensus       178 ------~~ad~~~I~~i~--~~ipV--IgnGgI~s~eda~~~l~~GaD~VmiGR~  222 (233)
T cd02911         178 ------NHADLKKIRDIS--TELFI--IGNNSVTTIESAKEMFSYGADMVSVARA  222 (233)
T ss_pred             ------CCCcHHHHHHhc--CCCEE--EEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence                  122456666665  46898  6799999999999999999999999999

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.94  E-value=2.3e-08  Score=95.75  Aligned_cols=190  Identities=24%  Similarity=0.318  Sum_probs=113.5

Q ss_pred             CccccCCCHHHHHHHHHcCCcEEEec------ccccchhhh-cCCC-------------CCCCChHH----HHHHHhhcC
Q 037779           37 GVIMDVVTPEQARIAEEAGACAVMAL------ERVPADIRA-QGGV-------------ARMSDPQL----IKQIKSSVT   92 (310)
Q Consensus        37 g~i~~~~~~~~a~~~~~~Ga~~I~~l------~~~~~d~r~-~~G~-------------~~~~~~~~----i~~i~~~~~   92 (310)
                      +.|..+.+++++..+.++|+-.+...      +..+.+.+. ..+.             ....++++    ++++++. .
T Consensus        53 a~M~gVt~~~la~avs~~GglGvl~~~gl~~~~~~~e~l~~qi~~~~~~~~~~~~~~~~~~P~~p~l~~~iv~~~~~~-~  131 (368)
T PRK08649         53 SPMDAVVSPETAIELGKLGGLGVLNLEGLWTRYEDPEPILDEIASLGKDEATRLMQELYAEPIKPELITERIAEIRDA-G  131 (368)
T ss_pred             cCCcccCCHHHHHHHHhCCCceEEeeccccccCCCHHHHHHHHHhcCcHHHHHHHHHhhcCCCCHHHHHHHHHHHHhC-e
Confidence            56777888999999999999655331      100111000 0000             00011222    2333332 3


Q ss_pred             cceEeecccc---chHHHHHHHHcCCCeeeecC---------C-CChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHh
Q 037779           93 IPVMAKARIG---HFVEAQILEAIGVDYVDESE---------V-LTPADEENHINKHNFRVPFVC-GCRNLGESLRRIRE  158 (310)
Q Consensus        93 lPv~~kd~i~---~~~~~~~~~~aGad~v~~~~---------~-~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~  158 (310)
                      +++  +.++.   ..+.++.+.++|+|.+..+.         . ..+..+.+.+++  .++++++ .+.|.++++++.+.
T Consensus       132 V~v--~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~--~~ipVIaG~V~t~e~A~~l~~a  207 (368)
T PRK08649        132 VIV--AVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE--LDVPVIVGGCVTYTTALHLMRT  207 (368)
T ss_pred             EEE--EEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHH--CCCCEEEeCCCCHHHHHHHHHc
Confidence            444  33332   33667889999999987531         1 135566666654  4688888 79999999999999


Q ss_pred             CCCEEEEecCCCC-CchHHHHHHHHHhhcceecccccCchhHHhhhccCCCc-HHHHHHHH--------hc--CCCCEEE
Q 037779          159 GAAMIRTKGEAGT-GNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAP-YDLVMQTK--------QL--GRLPVVH  226 (310)
Q Consensus       159 Gad~I~v~g~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~-~~l~~~i~--------~~--~~iPVv~  226 (310)
                      |||.|.+. ...+ .+                  .+...       .++..+ ...+..+.        +.  .++||  
T Consensus       208 GAD~V~VG-~G~Gs~~------------------~t~~~-------~g~g~p~~~ai~~~~~a~~~~l~~~~~~~vpV--  259 (368)
T PRK08649        208 GAAGVLVG-IGPGAAC------------------TSRGV-------LGIGVPMATAIADVAAARRDYLDETGGRYVHV--  259 (368)
T ss_pred             CCCEEEEC-CCCCcCC------------------CCccc-------CCCCcCHHHHHHHHHHHHHHhhhhhcCCCCeE--
Confidence            99999884 2211 11                  00000       011111 11122211        11  14899  


Q ss_pred             EccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          227 FAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       227 ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                      ||+|||.++.|+.+++.+|||+|++||.|..+.
T Consensus       260 IAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~  292 (368)
T PRK08649        260 IADGGIGTSGDIAKAIACGADAVMLGSPLARAA  292 (368)
T ss_pred             EEeCCCCCHHHHHHHHHcCCCeecccchhcccc
Confidence            789999999999999999999999999999854

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=98.93  E-value=1.8e-08  Score=99.26  Aligned_cols=129  Identities=20%  Similarity=0.286  Sum_probs=91.6

Q ss_pred             hHHHHHHHHcCCCeeeec----CCCChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHH
Q 037779          104 FVEAQILEAIGVDYVDES----EVLTPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTK-GEAGTGNIVEA  177 (310)
Q Consensus       104 ~~~~~~~~~aGad~v~~~----~~~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~  177 (310)
                      .+.++.+.++|+|.|.+.    +.....+.++.++++.+++++++ ++-|.++++.+.++|+|+|.+. |+..+...   
T Consensus       226 ~~r~~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t---  302 (450)
T TIGR01302       226 KERAEALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTT---  302 (450)
T ss_pred             HHHHHHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCcc---
Confidence            467788899999998732    22234566677776667888888 6999999999999999999875 44321110   


Q ss_pred             HHHHHHhhcceecccccCchhHHhhhccCCC-cHHHHHHHHh---cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779          178 VRHVRSVMGDIRVLRNMDDDEVFTFAKNIAA-PYDLVMQTKQ---LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       178 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~-~~~l~~~i~~---~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs  253 (310)
                                 +.+.            +++. ....+..+.+   ..++||  |++|||.++.|+.+++++||++|++||
T Consensus       303 -----------~~~~------------~~g~p~~~~i~~~~~~~~~~~vpv--iadGGi~~~~di~kAla~GA~~V~~G~  357 (450)
T TIGR01302       303 -----------RIVA------------GVGVPQITAVYDVAEYAAQSGIPV--IADGGIRYSGDIVKALAAGADAVMLGS  357 (450)
T ss_pred             -----------ceec------------CCCccHHHHHHHHHHHHhhcCCeE--EEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence                       0000            1111 2233333332   246898  789999999999999999999999999


Q ss_pred             ccccCCC
Q 037779          254 GVFKSGD  260 (310)
Q Consensus       254 ai~~~~d  260 (310)
                      .|..++.
T Consensus       358 ~~a~~~e  364 (450)
T TIGR01302       358 LLAGTTE  364 (450)
T ss_pred             hhhcCCc
Confidence            9998754

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=98.92  E-value=3.6e-08  Score=88.17  Aligned_cols=148  Identities=28%  Similarity=0.446  Sum_probs=94.1

Q ss_pred             HHHHHHHHcCCcEEEecc-cccch--hhhcCCCCCCCChHH----HHHHHhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779           46 EQARIAEEAGACAVMALE-RVPAD--IRAQGGVARMSDPQL----IKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYV  118 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~~d--~r~~~G~~~~~~~~~----i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v  118 (310)
                      +.++.+.++|+++| .+| .+|..  .+...|+....+++.    ++++++.+++|+.++...++.              
T Consensus        71 ~aa~~~~~aG~d~i-eln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~--------------  135 (231)
T cd02801          71 EAAKIVEELGADGI-DLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWD--------------  135 (231)
T ss_pred             HHHHHHHhcCCCEE-EEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccC--------------
Confidence            56888888999998 777 33321  111124444555554    455666667888888665420              


Q ss_pred             eecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchh
Q 037779          119 DESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDE  198 (310)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  198 (310)
                          .  ..+..+                   -++...+.|+|++.+++.....                   .+     
T Consensus       136 ----~--~~~~~~-------------------~~~~l~~~Gvd~i~v~~~~~~~-------------------~~-----  166 (231)
T cd02801         136 ----D--EEETLE-------------------LAKALEDAGASALTVHGRTREQ-------------------RY-----  166 (231)
T ss_pred             ----C--chHHHH-------------------HHHHHHHhCCCEEEECCCCHHH-------------------cC-----
Confidence                0  011111                   1223345578888776431100                   00     


Q ss_pred             HHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccCCCHHHHH
Q 037779          199 VFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSGDPVRRA  265 (310)
Q Consensus       199 ~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~~dp~~~~  265 (310)
                            .....++.++.+++..++||  +++|||.+++++.++++. |+|+|++|++++..++....+
T Consensus       167 ------~~~~~~~~~~~i~~~~~ipv--i~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~~~  226 (231)
T cd02801         167 ------SGPADWDYIAEIKEAVSIPV--IANGDIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREI  226 (231)
T ss_pred             ------CCCCCHHHHHHHHhCCCCeE--EEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHHhh
Confidence                  01235777788888778999  679999999999999997 899999999999977665444

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.89  E-value=1.7e-08  Score=99.68  Aligned_cols=132  Identities=22%  Similarity=0.292  Sum_probs=91.5

Q ss_pred             HHHHHHHHcCCCeeeec--CC--CChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHH
Q 037779          105 VEAQILEAIGVDYVDES--EV--LTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVR  179 (310)
Q Consensus       105 ~~~~~~~~aGad~v~~~--~~--~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~  179 (310)
                      +.++.+.++|+|.|.+.  +.  ....+.++.+++..++++++++ +-|.++++.+.++|+|+|.+.+-.++-..     
T Consensus       228 ~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~t-----  302 (475)
T TIGR01303       228 GKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCT-----  302 (475)
T ss_pred             HHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCcccc-----
Confidence            67788899999998732  22  2234566677766678999998 99999999999999999998622111100     


Q ss_pred             HHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          180 HVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       180 ~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                              .+.+.....       +...+..+..+...+. .+||  ||+|||+++.|+.+++.+||++|++|+.|..+.
T Consensus       303 --------tr~~~~~g~-------~~~~a~~~~~~~~~~~-~~~v--iadGgi~~~~di~kala~GA~~vm~g~~~ag~~  364 (475)
T TIGR01303       303 --------TRMMTGVGR-------PQFSAVLECAAEARKL-GGHV--WADGGVRHPRDVALALAAGASNVMVGSWFAGTY  364 (475)
T ss_pred             --------CccccCCCC-------chHHHHHHHHHHHHHc-CCcE--EEeCCCCCHHHHHHHHHcCCCEEeechhhcccc
Confidence                    011111100       0112234444444443 6899  789999999999999999999999999998865

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK06806 fructose-bisphosphate aldolase; Provisional

Probab=98.89  E-value=3.5e-07  Score=84.62  Aligned_cols=188  Identities=14%  Similarity=0.161  Sum_probs=121.4

Q ss_pred             HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CCC
Q 037779           47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EVL  124 (310)
Q Consensus        47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~~  124 (310)
                      ..+++++.+...|.++.  +...++ .|..  .-...++...+...+||.++ |.-.+++.++.+.+.|.+.|-.. ..+
T Consensus        34 vi~aAe~~~~Pvii~~~--~~~~~~-~~~~--~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d~s~~  108 (281)
T PRK06806         34 AIKAAEELNSPIILQIA--EVRLNH-SPLH--LIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFDGSHL  108 (281)
T ss_pred             HHHHHHHhCCCEEEEcC--cchhcc-CChH--HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEcCCCC
Confidence            47777788888775551  111111 1110  00134455566678999886 33335577788889999998732 223


Q ss_pred             ChhHH-------HHHHHhcCC------C-Cc--------EEeecCCHHHHHHHHH-hCCCEEEEe-cCCCCCchHHHHHH
Q 037779          125 TPADE-------ENHINKHNF------R-VP--------FVCGCRNLGESLRRIR-EGAAMIRTK-GEAGTGNIVEAVRH  180 (310)
Q Consensus       125 ~~~~~-------~~~~~~~~~------~-l~--------v~~~v~t~~ea~~a~~-~Gad~I~v~-g~~~~~~~~~~~~~  180 (310)
                      +..+.       .+.+++.+.      + +.        +..+++|++|+.++.+ .|+|++.+. |+.++..       
T Consensus       109 ~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~-------  181 (281)
T PRK06806        109 PLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGNAHGMY-------  181 (281)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCCCCCCC-------
Confidence            33332       233333321      0 11        2345789999999874 699999984 5544321       


Q ss_pred             HHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779          181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD  260 (310)
Q Consensus       181 ~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d  260 (310)
                                 +  .         ...-.++.++.+.+..++|++++-++|| +.+++.++++.|+++|-|+|.|+.  +
T Consensus       182 -----------~--~---------~~~l~~~~L~~i~~~~~iPlV~hG~SGI-~~e~~~~~i~~G~~kinv~T~i~~--a  236 (281)
T PRK06806        182 -----------N--G---------DPNLRFDRLQEINDVVHIPLVLHGGSGI-SPEDFKKCIQHGIRKINVATATFN--S  236 (281)
T ss_pred             -----------C--C---------CCccCHHHHHHHHHhcCCCEEEECCCCC-CHHHHHHHHHcCCcEEEEhHHHHH--H
Confidence                       0  0         0123688899998888899988733399 699999999999999999999998  5


Q ss_pred             HHHHHHHHHHH
Q 037779          261 PVRRARAIVQA  271 (310)
Q Consensus       261 p~~~~~~~~~~  271 (310)
                      +.+.++++.+.
T Consensus       237 ~~~a~~~~~~~  247 (281)
T PRK06806        237 VITAVNNLVLN  247 (281)
T ss_pred             HHHHHHHHHHh
Confidence            77777777643

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=98.88  E-value=2.5e-08  Score=93.13  Aligned_cols=181  Identities=23%  Similarity=0.306  Sum_probs=107.1

Q ss_pred             HHHHHHHHcC-CcEEEecc-cccchhhhcCCCCCCCChHH----HHHHHhhcCcceEeeccccc---hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAG-ACAVMALE-RVPADIRAQGGVARMSDPQL----IKQIKSSVTIPVMAKARIGH---FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~G-a~~I~~l~-~~~~d~r~~~G~~~~~~~~~----i~~i~~~~~lPv~~kd~i~~---~~~~~~~~~aGad  116 (310)
                      +.|+.+.++| +++| .+| .+|...  .+|.....+++.    ++++++.+++||++|.....   .+.++.+.++|+|
T Consensus       108 ~~a~~~~~aG~~D~i-ElN~~cP~~~--~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~~~~a~~l~~~G~d  184 (301)
T PRK07259        108 EVAEKLSKAPNVDAI-ELNISCPNVK--HGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNVTDIVEIAKAAEEAGAD  184 (301)
T ss_pred             HHHHHHhccCCcCEE-EEECCCCCCC--CCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCchhHHHHHHHHHHcCCC
Confidence            5688888998 9998 787 565421  123333344444    55667777899999865431   1335667778888


Q ss_pred             eeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCc
Q 037779          117 YVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDD  196 (310)
Q Consensus       117 ~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  196 (310)
                      .+.......             +..+  +.++..          .........+++.                       
T Consensus       185 ~i~~~nt~~-------------g~~~--~~~~~~----------~~~~~~~gg~sg~-----------------------  216 (301)
T PRK07259        185 GLSLINTLK-------------GMAI--DIKTRK----------PILANVTGGLSGP-----------------------  216 (301)
T ss_pred             EEEEEcccc-------------cccc--ccccCc----------eeecCCcCccCCc-----------------------
Confidence            875322100             0000  000000          0000000001110                       


Q ss_pred             hhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCC
Q 037779          197 DEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYS  276 (310)
Q Consensus       197 d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~  276 (310)
                       .      ......+.++.+++..++||  |+.|||.|++++.+++++|||+|++||+++..++   ..+.+.+.++.|.
T Consensus       217 -~------~~p~~l~~v~~i~~~~~ipv--i~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~---~~~~i~~~l~~~~  284 (301)
T PRK07259        217 -A------IKPIALRMVYQVYQAVDIPI--IGMGGISSAEDAIEFIMAGASAVQVGTANFYDPY---AFPKIIEGLEAYL  284 (301)
T ss_pred             -C------cccccHHHHHHHHHhCCCCE--EEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcH---HHHHHHHHHHHHH
Confidence             0      01124667778877778999  6789999999999999999999999999999443   4455566666655


Q ss_pred             ChhhHHhhhhccC
Q 037779          277 DPDVLAEVSCGLG  289 (310)
Q Consensus       277 ~~~~~~~~~~~~~  289 (310)
                      ....+.++.+..|
T Consensus       285 ~~~g~~~i~~~~g  297 (301)
T PRK07259        285 DKYGIKSIEEIVG  297 (301)
T ss_pred             HHcCCCCHHHHhC
Confidence            5555555554443

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=98.86  E-value=1.6e-07  Score=88.09  Aligned_cols=176  Identities=16%  Similarity=0.148  Sum_probs=111.0

Q ss_pred             CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHH-HHHHHhhc--CcceEeecccc--chHHHHHHHHcC--
Q 037779           42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQL-IKQIKSSV--TIPVMAKARIG--HFVEAQILEAIG--  114 (310)
Q Consensus        42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~-i~~i~~~~--~lPv~~kd~i~--~~~~~~~~~~aG--  114 (310)
                      ..+.++|+.+.+.|...+ .+       + +.       ++. ...+++..  ++++.+.....  +.+.+..+.++|  
T Consensus        45 ~in~~LA~~a~~~G~~~i-~h-------K-~~-------~E~~~sfvrk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~  108 (321)
T TIGR01306        45 IIDEKLAEQLAENGYFYI-MH-------R-FD-------EESRIPFIKDMQERGLFASISVGVKACEYEFVTQLAEEALT  108 (321)
T ss_pred             hhhHHHHHHHHHcCCEEE-Ee-------c-CC-------HHHHHHHHHhccccccEEEEEcCCCHHHHHHHHHHHhcCCC
Confidence            455689999999988775 22       1 11       222 22233322  34333332222  235667778888  


Q ss_pred             CCeeeec--CC--CChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHHHHHhhcce
Q 037779          115 VDYVDES--EV--LTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRHVRSVMGDI  188 (310)
Q Consensus       115 ad~v~~~--~~--~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~~~  188 (310)
                      +|+|...  ..  ....+.++.+++..+...++.. +-|.+.++.+.+.|+|.|.+. |+...-..              
T Consensus       109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~t--------------  174 (321)
T TIGR01306       109 PEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCIT--------------  174 (321)
T ss_pred             CCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccc--------------
Confidence            7987632  22  2233456666665555667776 889999999999999999886 44322100              


Q ss_pred             ecccccCchhHHhhhccCC-CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          189 RVLRNMDDDEVFTFAKNIA-APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       189 ~~l~~~~~d~~~~~~~~~~-~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                      +....          .+.. +....+..+.+..++||  |+.|||.+..|+.+++.+|||+|++|+.|..++
T Consensus       175 r~~~g----------~g~~~~~l~ai~ev~~a~~~pV--IadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~  234 (321)
T TIGR01306       175 KIKTG----------FGTGGWQLAALRWCAKAARKPI--IADGGIRTHGDIAKSIRFGASMVMIGSLFAGHE  234 (321)
T ss_pred             eeeec----------cCCCchHHHHHHHHHHhcCCeE--EEECCcCcHHHHHHHHHcCCCEEeechhhcCcc
Confidence            00000          0111 11235556666667898  789999999999999999999999999998765

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=98.86  E-value=7e-08  Score=89.46  Aligned_cols=54  Identities=20%  Similarity=0.367  Sum_probs=45.1

Q ss_pred             cHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC-CCHHHH
Q 037779          209 PYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS-GDPVRR  264 (310)
Q Consensus       209 ~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~-~dp~~~  264 (310)
                      .++.++.+++..  ++||  |+.|||.|++++.+++++|||+|++||+++.. ++....
T Consensus       229 ~~~~v~~i~~~~~~~ipi--ia~GGI~~~~da~~~l~~GAd~V~vg~a~~~~GP~~~~~  285 (289)
T cd02810         229 ALRWVARLAARLQLDIPI--IGVGGIDSGEDVLEMLMAGASAVQVATALMWDGPDVIRK  285 (289)
T ss_pred             HHHHHHHHHHhcCCCCCE--EEECCCCCHHHHHHHHHcCccHheEcHHHHhcCccHHHH
Confidence            356677777765  7899  67899999999999999999999999999986 665544

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.85  E-value=4.8e-08  Score=97.13  Aligned_cols=125  Identities=20%  Similarity=0.264  Sum_probs=88.6

Q ss_pred             HHHHHHHHcCCCeeeec--CCCC--hhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEe-cCCC--CCchHH
Q 037779          105 VEAQILEAIGVDYVDES--EVLT--PADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTK-GEAG--TGNIVE  176 (310)
Q Consensus       105 ~~~~~~~~aGad~v~~~--~~~~--~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~-g~~~--~~~~~~  176 (310)
                      +.++.+.++|+|.|.++  +.-+  ..+.++.++++.+++++++ .+-|.++++.+.++|+|+|.+. |+..  ++..  
T Consensus       244 ~~~~~l~~ag~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~--  321 (495)
T PTZ00314        244 ERAAALIEAGVDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQE--  321 (495)
T ss_pred             HHHHHHHHCCCCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccch--
Confidence            56778888999999843  2222  2356777777666788888 6899999999999999999874 3322  2110  


Q ss_pred             HHHHHHHhhcceecccccCchhHHhhhccCCCc-HHHHHHH---HhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEc
Q 037779          177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAP-YDLVMQT---KQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG  252 (310)
Q Consensus       177 ~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~-~~l~~~i---~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VG  252 (310)
                                    ..            +++.| ...+..+   .+..++|+  |++|||.++.|+.+++++||++|++|
T Consensus       322 --------------~~------------~~g~p~~~ai~~~~~~~~~~~v~v--IadGGi~~~~di~kAla~GA~~Vm~G  373 (495)
T PTZ00314        322 --------------VC------------AVGRPQASAVYHVARYARERGVPC--IADGGIKNSGDICKALALGADCVMLG  373 (495)
T ss_pred             --------------hc------------cCCCChHHHHHHHHHHHhhcCCeE--EecCCCCCHHHHHHHHHcCCCEEEEC
Confidence                          00            11112 2222222   22246898  78999999999999999999999999


Q ss_pred             cccccCC
Q 037779          253 SGVFKSG  259 (310)
Q Consensus       253 sai~~~~  259 (310)
                      +.|..+.
T Consensus       374 ~~~a~~~  380 (495)
T PTZ00314        374 SLLAGTE  380 (495)
T ss_pred             chhcccc
Confidence            9999865

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=98.81  E-value=4e-07  Score=84.77  Aligned_cols=181  Identities=18%  Similarity=0.260  Sum_probs=100.2

Q ss_pred             hhcCcceEeeccccc---h-HHHHHHHHcCCCeeeec-----------CC-CChhH---HHHHHHhcCCCCcEEeecC--
Q 037779           89 SSVTIPVMAKARIGH---F-VEAQILEAIGVDYVDES-----------EV-LTPAD---EENHINKHNFRVPFVCGCR--  147 (310)
Q Consensus        89 ~~~~lPv~~kd~i~~---~-~~~~~~~~aGad~v~~~-----------~~-~~~~~---~~~~~~~~~~~l~v~~~v~--  147 (310)
                      +..+.|++++....+   + +.+..+.++|+|+|-..           .. .++..   +++.+++. .++++++.+.  
T Consensus        86 ~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~-~~~Pv~vKl~~~  164 (296)
T cd04740          86 REFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKA-TDVPVIVKLTPN  164 (296)
T ss_pred             hcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhc-cCCCEEEEeCCC
Confidence            335689988755432   2 33456677899998531           01 12333   34444432 3677776543  


Q ss_pred             --CHHH-HHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhccee-cccccCchhHHhhhccCCCcHHHHHHHHhcCCCC
Q 037779          148 --NLGE-SLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIR-VLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLP  223 (310)
Q Consensus       148 --t~~e-a~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iP  223 (310)
                        +..+ ++.+.+.|+|.+.+.+...+..+ +.    +.....+. .....+.      .......++.++.+++..++|
T Consensus       165 ~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~-~~----~~~~~~~~~~~gg~sg------~~~~~~~~~~i~~i~~~~~ip  233 (296)
T cd04740         165 VTDIVEIARAAEEAGADGLTLINTLKGMAI-DI----ETRKPILGNVTGGLSG------PAIKPIALRMVYQVYKAVEIP  233 (296)
T ss_pred             chhHHHHHHHHHHcCCCEEEEECCCccccc-cc----ccCceeecCCcceecC------cccchHHHHHHHHHHHhcCCC
Confidence              2223 45567889998876533211100 00    00000000 0000000      000112357778887777899


Q ss_pred             EEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChhhHHhhhh
Q 037779          224 VVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSC  286 (310)
Q Consensus       224 Vv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~  286 (310)
                      |  |+.|||.+++++.+++++|||+|++||+++..++..   +.+.+.+..+.....+..+.+
T Consensus       234 i--i~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~---~~i~~~l~~~~~~~g~~~~~~  291 (296)
T cd04740         234 I--IGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAF---KEIIEGLEAYLDEEGIKSIEE  291 (296)
T ss_pred             E--EEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHH---HHHHHHHHHHHHHcCCCCHHH
Confidence            9  678999999999999999999999999999955433   444455544444444444433

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist

Probab=98.80  E-value=7.8e-07  Score=82.39  Aligned_cols=178  Identities=15%  Similarity=0.215  Sum_probs=114.2

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC-cceEee-ccccchHHHHHHHHcCCCeeeec-C
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT-IPVMAK-ARIGHFVEAQILEAIGVDYVDES-E  122 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~-lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~  122 (310)
                      ...+++++.++..|.++.  +...++.+|...  -...++.+++..+ +||.++ |.-..++.++.+...|.+.|... .
T Consensus        31 avi~aAe~~~~PvIl~~~--~~~~~~~~~~~~--~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVmid~s  106 (282)
T TIGR01859        31 AILEAAEEENSPVIIQVS--EGAIKYMGGYKM--AVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFSSVMIDGS  106 (282)
T ss_pred             HHHHHHHHhCCCEEEEcC--cchhhccCcHHH--HHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEEEECCC
Confidence            346777777888775551  111222222100  1344566667777 999987 44445677888889999998733 2


Q ss_pred             CCChhHHHHHHHh-----cCCCCcEE-----------------eecCCHHHHHHHHH-hCCCEEEEe-cCCCCCchHHHH
Q 037779          123 VLTPADEENHINK-----HNFRVPFV-----------------CGCRNLGESLRRIR-EGAAMIRTK-GEAGTGNIVEAV  178 (310)
Q Consensus       123 ~~~~~~~~~~~~~-----~~~~l~v~-----------------~~v~t~~ea~~a~~-~Gad~I~v~-g~~~~~~~~~~~  178 (310)
                      .++..+.++..++     +..++.+-                 ...++++|+..+.+ .|+|++.+. |+.++..     
T Consensus       107 ~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~-----  181 (282)
T TIGR01859       107 HLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGKY-----  181 (282)
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcCEEeeccCcccccc-----
Confidence            2343433322221     22232222                 34779999999986 899999874 5543211     


Q ss_pred             HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                                   ++ .          ..-+++.++.+++..++|++++-.+|| +.+++.+++++|+++|-++|.+..
T Consensus       182 -------------~~-~----------~~l~~e~L~~i~~~~~iPlv~hGgSGi-~~e~i~~~i~~Gi~kiNv~T~l~~  235 (282)
T TIGR01859       182 -------------KG-E----------PGLDFERLKEIKELTNIPLVLHGASGI-PEEQIKKAIKLGIAKINIDTDCRI  235 (282)
T ss_pred             -------------CC-C----------CccCHHHHHHHHHHhCCCEEEECCCCC-CHHHHHHHHHcCCCEEEECcHHHH
Confidence                         11 0          122578888888877899988733399 599999999999999999998875

This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.76  E-value=1.5e-07  Score=93.66  Aligned_cols=126  Identities=20%  Similarity=0.252  Sum_probs=88.7

Q ss_pred             hHHHHHHHHcCCCeeeec--CC--CChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEe-cC--CCCCchH
Q 037779          104 FVEAQILEAIGVDYVDES--EV--LTPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTK-GE--AGTGNIV  175 (310)
Q Consensus       104 ~~~~~~~~~aGad~v~~~--~~--~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~-g~--~~~~~~~  175 (310)
                      ++.++.+.++|++.+...  +.  ....+.++.++++.+++++++ ++-|.++++.+.++|+|+|.+. |+  .+++   
T Consensus       230 ~e~a~~L~~agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs~~~~---  306 (486)
T PRK05567        230 EERAEALVEAGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEAGADAVKVGIGPGSICTT---  306 (486)
T ss_pred             HHHHHHHHHhCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHcCCCEEEECCCCCccccc---
Confidence            467788899999987632  11  224455666666556777665 6999999999999999999874 22  1111   


Q ss_pred             HHHHHHHHhhcceecccccCchhHHhhhccCC-CcHHHHHHHHhc---CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEE
Q 037779          176 EAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIA-APYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFV  251 (310)
Q Consensus       176 ~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~-~~~~l~~~i~~~---~~iPVv~ia~GGI~t~~di~~~~~~GadgV~V  251 (310)
                                   +.+.            +++ +..+.+..+.+.   .++||  |++|||.++.|+.+++++|||+|++
T Consensus       307 -------------r~~~------------~~g~p~~~~~~~~~~~~~~~~~~v--iadGGi~~~~di~kAla~GA~~v~~  359 (486)
T PRK05567        307 -------------RIVA------------GVGVPQITAIADAAEAAKKYGIPV--IADGGIRYSGDIAKALAAGASAVML  359 (486)
T ss_pred             -------------eeec------------CCCcCHHHHHHHHHHHhccCCCeE--EEcCCCCCHHHHHHHHHhCCCEEEE
Confidence                         1111            121 234555444442   35788  7899999999999999999999999


Q ss_pred             ccccccCC
Q 037779          252 GSGVFKSG  259 (310)
Q Consensus       252 Gsai~~~~  259 (310)
                      |++|.++.
T Consensus       360 G~~~a~~~  367 (486)
T PRK05567        360 GSMLAGTE  367 (486)
T ss_pred             Cccccccc
Confidence            99999865

>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]

Probab=98.75  E-value=7.2e-07  Score=80.69  Aligned_cols=192  Identities=23%  Similarity=0.315  Sum_probs=114.5

Q ss_pred             cccceeeecCC-ccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc--CcceEeeccc-
Q 037779           27 KVGLAQMLRGG-VIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV--TIPVMAKARI-  101 (310)
Q Consensus        27 ~~~~~~~l~~g-~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~--~lPv~~kd~i-  101 (310)
                      .+++.+-+..| .+....++ ..++.+.++|+++++.-                  +-.++.....+  ++|++++--- 
T Consensus        26 i~a~DhGv~~g~p~~gl~d~e~~v~~v~~~g~dav~~~------------------~G~~~~~~~~y~~dvplivkl~~~   87 (265)
T COG1830          26 ILAMDHGVEHGNPIEGLEDPENIVAKVAEAGADAVAMT------------------PGIARSVHRGYAHDVPLIVKLNGS   87 (265)
T ss_pred             EEecccccccCCCcccccCHHHHHHHHHhcCCCEEEec------------------HhHHhhcCccccCCcCEEEEeccc
Confidence            35555555666 55566776 57899999999998421                  12333333222  5777765211 


Q ss_pred             -------cc---hHHHHHHHHcCCCeeeec-----CC--CChhHHHHHHHh-cCCCCcEEeec------------CCHHH
Q 037779          102 -------GH---FVEAQILEAIGVDYVDES-----EV--LTPADEENHINK-HNFRVPFVCGC------------RNLGE  151 (310)
Q Consensus       102 -------~~---~~~~~~~~~aGad~v~~~-----~~--~~~~~~~~~~~~-~~~~l~v~~~v------------~t~~e  151 (310)
                             .+   .-.++.+..+|||+|-.+     ..  ....++.+.... +..|+++++-+            ++++.
T Consensus        88 t~l~~~~~~~~~~~~ve~ai~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~  167 (265)
T COG1830          88 TSLSPDPNDQVLVATVEDAIRLGADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADL  167 (265)
T ss_pred             cccCCCcccceeeeeHHHHHhCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHH
Confidence                   01   124556778999998622     11  111122222222 45677776622            22222


Q ss_pred             ----HHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEE
Q 037779          152 ----SLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHF  227 (310)
Q Consensus       152 ----a~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~i  227 (310)
                          ++.+.++|||+|+++   |++                                    +.+-.+.+.+.+.+||+  
T Consensus       168 v~~aaRlaaelGADIiK~~---ytg------------------------------------~~e~F~~vv~~~~vpVv--  206 (265)
T COG1830         168 VGYAARLAAELGADIIKTK---YTG------------------------------------DPESFRRVVAACGVPVV--  206 (265)
T ss_pred             HHHHHHHHHHhcCCeEeec---CCC------------------------------------ChHHHHHHHHhCCCCEE--
Confidence                234567788888875   111                                    12233444444558996  


Q ss_pred             ccCCCCC------HHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCC
Q 037779          228 AAGGVAT------PADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSD  277 (310)
Q Consensus       228 a~GGI~t------~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~  277 (310)
                      .+||=++      .+-...+++.|+.|+.+|+-|++.++|..+++++...++...+
T Consensus       207 iaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~p~~m~~Ai~~Ivhe~~~  262 (265)
T COG1830         207 IAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHEDPEAMVKAIQAIVHENAS  262 (265)
T ss_pred             EeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCChHHHHHHHHHHhcCCCC
Confidence            3677655      2235677789999999999999999999999999888876554

>PLN02495 oxidoreductase, acting on the CH-CH group of donors

Probab=98.73  E-value=5e-08  Score=93.76  Aligned_cols=197  Identities=20%  Similarity=0.233  Sum_probs=114.9

Q ss_pred             HHHHHHHHcCCcEEEecc-cccchhh-hcCCCCCCCChHHHHHH----HhhcCcceEeecccc--c-hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALE-RVPADIR-AQGGVARMSDPQLIKQI----KSSVTIPVMAKARIG--H-FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~~d~r-~~~G~~~~~~~~~i~~i----~~~~~lPv~~kd~i~--~-~~~~~~~~~aGad  116 (310)
                      ++++.++++|+++| .|| .+|.-.. ...|....++++.++++    ++.+++||++|.--.  + ...++.+.++|||
T Consensus       131 ~~a~~~e~~GaD~i-ELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsPn~t~i~~ia~aa~~~Gad  209 (385)
T PLN02495        131 EIIERVEETGVDAL-EINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKMTPNITDITQPARVALKSGCE  209 (385)
T ss_pred             HHHHHHHhcCCCEE-EEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEeCCChhhHHHHHHHHHHhCCC
Confidence            67999999999998 788 5654221 11244445567777554    666789999995432  1 2456778889999


Q ss_pred             eeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecC-CCCCchHHHHHHHHHhhcceecccccC
Q 037779          117 YVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGE-AGTGNIVEAVRHVRSVMGDIRVLRNMD  195 (310)
Q Consensus       117 ~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~-~~~~~~~~~~~~~~~~~~~~~~l~~~~  195 (310)
                      +|.........              ..+++.+..-.. .  .+    +.++. .++|.   +++.               
T Consensus       210 gi~liNT~~~~--------------~~ID~~t~~p~~-~--~~----~~~~~GGlSG~---alkp---------------  250 (385)
T PLN02495        210 GVAAINTIMSV--------------MGINLDTLRPEP-C--VE----GYSTPGGYSSK---AVRP---------------  250 (385)
T ss_pred             EEEEecccCcc--------------cccccccCcccc-c--cC----CCCCCCCccch---hhhH---------------
Confidence            98732221100              001111100000 0  00    00011 01111   0000               


Q ss_pred             chhHHhhhccCCCcHHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779          196 DDEVFTFAKNIAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       196 ~d~~~~~~~~~~~~~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                         +     .+...+++.+.+...  .++|+  |+.|||.|.+|+.+.+.+||+.|.|+|+++... | ...+.+.+.+.
T Consensus       251 ---i-----Al~~v~~i~~~~~~~~~~~ipI--iGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~G-p-~vi~~i~~~L~  318 (385)
T PLN02495        251 ---I-----ALAKVMAIAKMMKSEFPEDRSL--SGIGGVETGGDAAEFILLGADTVQVCTGVMMHG-Y-PLVKNLCAELQ  318 (385)
T ss_pred             ---H-----HHHHHHHHHHHHhhhccCCCcE--EEECCCCCHHHHHHHHHhCCCceeEeeeeeecC-c-HHHHHHHHHHH
Confidence               0     001123344444321  14789  567999999999999999999999999999842 2 45677778888


Q ss_pred             cCCChhhHHhhhhccCCceec
Q 037779          274 NYSDPDVLAEVSCGLGEAMVG  294 (310)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~  294 (310)
                      +|.+...+..+.+..|....-
T Consensus       319 ~~m~~~G~~si~e~~G~~~~~  339 (385)
T PLN02495        319 DFMKKHNFSSIEDFRGASLPY  339 (385)
T ss_pred             HHHHHcCCCCHHHHhCcCCcc
Confidence            777777777777777655443

>TIGR02814 pfaD_fam PfaD family protein

Probab=98.72  E-value=1.2e-06  Score=85.38  Aligned_cols=179  Identities=22%  Similarity=0.228  Sum_probs=105.1

Q ss_pred             Cccc-cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCc-c-eEeeccccc------hHHH
Q 037779           37 GVIM-DVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTI-P-VMAKARIGH------FVEA  107 (310)
Q Consensus        37 g~i~-~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~l-P-v~~kd~i~~------~~~~  107 (310)
                      |.|. .+.+++++.++.++|.-++.-....+.+.          --+.|+++++.++- | +-++.+...      ...+
T Consensus        24 gpMa~GiSs~eLVaAVs~AGgLG~lgag~l~~e~----------l~~~I~~ir~~~~~~p~fGVNL~~~~~~~~~e~~~v   93 (444)
T TIGR02814        24 GAMANGIASAELVIAMGRAGILGFFGAGGLPLEE----------VEQAIHRIQQALPGGPAYGVNLIHSPSDPALEWGLV   93 (444)
T ss_pred             ccccCCCCCHHHHHHHHhCCceeeeCCCCCCHHH----------HHHHHHHHHHhcCCCCceEEEecccCCCcccHHHHH
Confidence            4454 57889999999999988752110111000          02345667765544 6 777655421      1345


Q ss_pred             HHHHHcCCCeeeecCCC--ChhHHHHHHHhcCC----------CCcEEeecC--------------------------CH
Q 037779          108 QILEAIGVDYVDESEVL--TPADEENHINKHNF----------RVPFVCGCR--------------------------NL  149 (310)
Q Consensus       108 ~~~~~aGad~v~~~~~~--~~~~~~~~~~~~~~----------~l~v~~~v~--------------------------t~  149 (310)
                      +.+.+.|+..|..+..+  +|.. . .++.++.          ...++..+.                          |+
T Consensus        94 ~l~l~~~V~~veasa~~~~~p~~-v-~~r~~G~~~~~~g~~~~~~~ViakVsr~~vAs~f~~p~p~~~v~~L~~~G~it~  171 (444)
T TIGR02814        94 DLLLRHGVRIVEASAFMQLTPAL-V-RYRAKGLHRDADGRVVIRNRLIAKVSRPEVAEAFMSPAPAHILQKLLAEGRITR  171 (444)
T ss_pred             HHHHHcCCCEEEeccccCCCcch-h-hhhhccccccccccccccceEEEecCCHHHHHHhcCCCcHHHHHHHHHcCCCCH
Confidence            77778999987643221  2221 2 2222221          023444433                          44


Q ss_pred             HHHHHHHHhC-CCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHH---hc------
Q 037779          150 GESLRRIREG-AAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTK---QL------  219 (310)
Q Consensus       150 ~ea~~a~~~G-ad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~---~~------  219 (310)
                      +|++.+.+.| +|.|.+..+.+ ||.                              +......+++.+.   +.      
T Consensus       172 eEA~~a~~~g~aD~Ivve~EAG-GHt------------------------------g~~~~~~Llp~i~~lrd~v~~~~~  220 (444)
T TIGR02814       172 EEAELARRVPVADDICVEADSG-GHT------------------------------DNRPLVVLLPAIIRLRDTLMRRYG  220 (444)
T ss_pred             HHHHHHHhCCCCcEEEEeccCC-CCC------------------------------CCCcHHHHHHHHHHHHHHHhhccc
Confidence            5555566677 58888763333 331                              0011234444442   11      


Q ss_pred             --CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779          220 --GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD  260 (310)
Q Consensus       220 --~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d  260 (310)
                        .++||  +++|||.|++.+..++.+||++|.+||.+.-+..
T Consensus       221 y~~~VpV--iAAGGI~t~~~vaAAlaLGAdgV~~GT~flat~E  261 (444)
T TIGR02814       221 YRKPIRV--GAAGGIGTPEAAAAAFMLGADFIVTGSVNQCTVE  261 (444)
T ss_pred             CCCCceE--EEeCCCCCHHHHHHHHHcCCcEEEeccHHHhCcc
Confidence              15778  7899999999999999999999999999988653

The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.

>PRK07315 fructose-bisphosphate aldolase; Provisional

Probab=98.71  E-value=2.7e-06  Score=79.21  Aligned_cols=190  Identities=15%  Similarity=0.155  Sum_probs=122.1

Q ss_pred             HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc--CcceEee-ccccchHHHHHHHHcCCCeeeec-C
Q 037779           47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV--TIPVMAK-ARIGHFVEAQILEAIGVDYVDES-E  122 (310)
Q Consensus        47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~--~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~  122 (310)
                      ..+++++.+...|.++.  +...++.+|...  -...++.+.+..  ++||.++ |.- +++.++.+...|.+.|-.. .
T Consensus        34 vi~aAe~~~sPvIlq~s--~~~~~~~~~~~~--~~~~~~~~a~~~~~~vPV~lHLDH~-~~~~i~~ai~~GftSVm~d~S  108 (293)
T PRK07315         34 ILRAAEAKKAPVLIQTS--MGAAKYMGGYKV--CKNLIENLVESMGITVPVAIHLDHG-HYEDALECIEVGYTSIMFDGS  108 (293)
T ss_pred             HHHHHHHHCCCEEEEcC--ccHHhhcCcHHH--HHHHHHHHHHHcCCCCcEEEECCCC-CHHHHHHHHHcCCCEEEEcCC
Confidence            46777777888775551  111222222100  133455666666  7799887 333 5667788888999998732 2


Q ss_pred             CCChhHHHH-------HHHhcCC------C-------CcEEeec-CCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHH
Q 037779          123 VLTPADEEN-------HINKHNF------R-------VPFVCGC-RNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRH  180 (310)
Q Consensus       123 ~~~~~~~~~-------~~~~~~~------~-------l~v~~~v-~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~  180 (310)
                      .++.++.++       ..++.+.      |       ..+..++ ++++|++++.+.|+|++.+. |+.++-        
T Consensus       109 ~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~~tgvD~LAv~iG~vHG~--------  180 (293)
T PRK07315        109 HLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVETGIDFLAAGIGNIHGP--------  180 (293)
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHHHcCCCEEeecccccccc--------
Confidence            234343332       2222221      1       1122334 89999999999999999886 554221        


Q ss_pred             HHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       181 ~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                                +++.++          .-.+++++.+.+.. ++|+|++-++|| +.+++.++++.|++.|-++|.|..  
T Consensus       181 ----------y~t~~k----------~l~~e~L~~i~~~~~~iPlVlhGGSGi-~~e~~~~~i~~Gi~KiNv~T~i~~--  237 (293)
T PRK07315        181 ----------YPENWE----------GLDLDHLEKLTEAVPGFPIVLHGGSGI-PDDQIQEAIKLGVAKVNVNTECQI--  237 (293)
T ss_pred             ----------CCCCCC----------cCCHHHHHHHHHhccCCCEEEECCCCC-CHHHHHHHHHcCCCEEEEccHHHH--
Confidence                      111010          23578899998876 599988844449 599999999999999999999997  


Q ss_pred             CHHHHHHHHHHHH
Q 037779          260 DPVRRARAIVQAV  272 (310)
Q Consensus       260 dp~~~~~~~~~~~  272 (310)
                      ++.+.++++.+..
T Consensus       238 ~~~~~~~~~~~~~  250 (293)
T PRK07315        238 AFANATRKFARDY  250 (293)
T ss_pred             HHHHHHHHHHHhc
Confidence            7888888877655

>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain

Probab=98.67  E-value=2e-07  Score=86.96  Aligned_cols=52  Identities=23%  Similarity=0.241  Sum_probs=41.7

Q ss_pred             HHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc-CCCHHH
Q 037779          210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK-SGDPVR  263 (310)
Q Consensus       210 ~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~-~~dp~~  263 (310)
                      ...++.+++..  ++||  |+.|||.|.+|+.+++.+|||+|+++|+++. .++...
T Consensus       230 l~~v~~~~~~~~~~ipI--ig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~~gp~~~~  284 (294)
T cd04741         230 LGNVRTFRRLLPSEIQI--IGVGGVLDGRGAFRMRLAGASAVQVGTALGKEGPKVFA  284 (294)
T ss_pred             HHHHHHHHHhcCCCCCE--EEeCCCCCHHHHHHHHHcCCCceeEchhhhhcCchHHH
Confidence            44556665554  5899  6789999999999999999999999999995 555443

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed

Probab=98.65  E-value=2.4e-06  Score=76.79  Aligned_cols=61  Identities=30%  Similarity=0.541  Sum_probs=51.5

Q ss_pred             CCcHHHHHHHHhcCCC-CEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 037779          207 AAPYDLVMQTKQLGRL-PVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQA  271 (310)
Q Consensus       207 ~~~~~l~~~i~~~~~i-PVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~  271 (310)
                      ..+.++++.+++..+. |+  +++|||++++++++++..|||+|+|||++.+  ||.+.++++++.
T Consensus       169 ~~~~e~I~~v~~~~~~~pv--ivGGGIrs~e~a~~~l~~GAD~VVVGSai~~--d~~~~~~~~~~~  230 (232)
T PRK04169        169 PVPPEMVKAVKKALDITPL--IYGGGIRSPEQARELMAAGADTIVVGNIIEE--DPKKTVKAIKKA  230 (232)
T ss_pred             CCCHHHHHHHHHhcCCCcE--EEECCCCCHHHHHHHHHhCCCEEEEChHHhh--CHHHHHHHHHhh
Confidence            3468889999887777 99  6799999999999999999999999999997  566666666654

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=98.65  E-value=8.2e-07  Score=84.80  Aligned_cols=190  Identities=21%  Similarity=0.243  Sum_probs=110.3

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccc-----hHHH-HHHHHcCCCe
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGH-----FVEA-QILEAIGVDY  117 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~-----~~~~-~~~~~aGad~  117 (310)
                      +++|+.+.++|...-  +    .+.+...-+  ....+..+.+|+.. +.|++++.+...     .+.+ +....++||+
T Consensus        80 ~~La~~a~~~G~~~~--~----Gs~~~~~~~--~~~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~ada  151 (352)
T PRK05437         80 RKLAEAAEELGIAMG--V----GSQRAALKD--PELADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADA  151 (352)
T ss_pred             HHHHHHHHHcCCCeE--e----cccHhhccC--hhhHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCc
Confidence            678999999985532  1    112211000  00123455667766 899999866631     2334 3444478888


Q ss_pred             eeec-----CCC------Chh---HHHHHHHhcCCCCcEEee-c---CCHHHHHHHHHhCCCEEEEecCCCCCchHHHHH
Q 037779          118 VDES-----EVL------TPA---DEENHINKHNFRVPFVCG-C---RNLGESLRRIREGAAMIRTKGEAGTGNIVEAVR  179 (310)
Q Consensus       118 v~~~-----~~~------~~~---~~~~~~~~~~~~l~v~~~-v---~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~  179 (310)
                      +.++     +..      ...   +.++.+.+ ..++++++. +   .+.++++.+.+.|+|+|.+.|..+++ +. .++
T Consensus       152 l~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~-~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~GGt~-~~-~ie  228 (352)
T PRK05437        152 LQIHLNPLQELVQPEGDRDFRGWLDNIAEIVS-ALPVPVIVKEVGFGISKETAKRLADAGVKAIDVAGAGGTS-WA-AIE  228 (352)
T ss_pred             EEEeCccchhhcCCCCcccHHHHHHHHHHHHH-hhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCCCCCC-cc-chh
Confidence            6522     110      111   22333333 236777763 3   57889999999999999998764332 11 011


Q ss_pred             HHHHhhcceecccccCchhHHhhhccCC-CcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          180 HVRSVMGDIRVLRNMDDDEVFTFAKNIA-APYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       180 ~~~~~~~~~~~l~~~~~d~~~~~~~~~~-~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                      ..+.....  ...++.         ++. +..+.+..+.+. .++||  |++|||.++.|+.+++.+|||+|.+|++++.
T Consensus       229 ~~R~~~~~--~~~~~~---------~~g~pt~~~l~~i~~~~~~ipv--ia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~  295 (352)
T PRK05437        229 NYRARDDR--LASYFA---------DWGIPTAQSLLEARSLLPDLPI--IASGGIRNGLDIAKALALGADAVGMAGPFLK  295 (352)
T ss_pred             hhhhhccc--cccccc---------cccCCHHHHHHHHHHhcCCCeE--EEECCCCCHHHHHHHHHcCCCEEEEhHHHHH
Confidence            11100000  000110         111 134555666665 47898  6799999999999999999999999999987


Q ss_pred             C
Q 037779          258 S  258 (310)
Q Consensus       258 ~  258 (310)
                      +
T Consensus       296 ~  296 (352)
T PRK05437        296 A  296 (352)
T ss_pred             H
Confidence            5

>PRK08227 autoinducer 2 aldolase; Validated

Probab=98.64  E-value=3.8e-06  Score=76.83  Aligned_cols=203  Identities=15%  Similarity=0.151  Sum_probs=116.8

Q ss_pred             CCccccccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHh-hcCcceEeec
Q 037779           22 SPFSVKVGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS-SVTIPVMAKA   99 (310)
Q Consensus        22 sp~~~~~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~-~~~lPv~~kd   99 (310)
                      |--....++..-+..|.+....++ +....+.+ |++++. +        .+         -.++.... ..++|++++.
T Consensus        21 sGr~~iva~DHG~~~Gp~~gl~~~~~~~~~i~~-~~da~~-~--------~~---------G~~~~~~~~~~~~~lil~l   81 (264)
T PRK08227         21 TGRTVMLAFDHGYFQGPTTGLERIDINIAPLFP-YADVLM-C--------TR---------GILRSVVPPATNKPVVLRA   81 (264)
T ss_pred             CCCEEEEECCCccccCCCccccChHHHHHHHhh-cCCEEE-e--------Ch---------hHHHhcccccCCCcEEEEE
Confidence            334444666666666666555553 45666666 799983 3        11         12332221 2356666652


Q ss_pred             ccc-----------chHHHHHHHHcCCCeeeecCCC-C---h---hHHHHHHHh-cCCCCcEEeec------CCHHH---
Q 037779          100 RIG-----------HFVEAQILEAIGVDYVDESEVL-T---P---ADEENHINK-HNFRVPFVCGC------RNLGE---  151 (310)
Q Consensus       100 ~i~-----------~~~~~~~~~~aGad~v~~~~~~-~---~---~~~~~~~~~-~~~~l~v~~~v------~t~~e---  151 (310)
                      --.           -+-.++.+...|||+|-.+-.. +   .   .++-+...+ +..|+++++-.      .+..+   
T Consensus        82 s~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla~~prG~~~~~~~~~ia  161 (264)
T PRK08227         82 SGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMAVTAVGKDMVRDARYFS  161 (264)
T ss_pred             cCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEecCCCCcCchHHHHH
Confidence            110           0123566788999998632111 1   1   122222222 44667666521      11111   


Q ss_pred             --HHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEcc
Q 037779          152 --SLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAA  229 (310)
Q Consensus       152 --a~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~  229 (310)
                        ++.+.++|||+|++.                          +.               -+-.+++.+.+++||+ | +
T Consensus       162 ~aaRiaaELGADiVK~~--------------------------y~---------------~~~f~~vv~a~~vPVv-i-a  198 (264)
T PRK08227        162 LATRIAAEMGAQIIKTY--------------------------YV---------------EEGFERITAGCPVPIV-I-A  198 (264)
T ss_pred             HHHHHHHHHcCCEEecC--------------------------CC---------------HHHHHHHHHcCCCcEE-E-e
Confidence              334456677777664                          10               0223444455678996 3 5


Q ss_pred             CCCCC-HH----HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChhhHHhhhh
Q 037779          230 GGVAT-PA----DAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSC  286 (310)
Q Consensus       230 GGI~t-~~----di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~  286 (310)
                      ||=.+ .+    .++.+++.||.||.+|+-+++.+||.++++++...++....+....++-+
T Consensus       199 GG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~IVh~~~s~~eA~~~~~  260 (264)
T PRK08227        199 GGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVHAVVHENETAKEAYELYL  260 (264)
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            66553 22    35667789999999999999999999999999999998887765555443

>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]

Probab=98.61  E-value=1.6e-07  Score=87.58  Aligned_cols=182  Identities=21%  Similarity=0.320  Sum_probs=108.3

Q ss_pred             HHHHHHHHcC-CcEEEecc-cccchhhhcCCCCCCCChHHH----HHHHhhcCcceEeecccc--c-hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAG-ACAVMALE-RVPADIRAQGGVARMSDPQLI----KQIKSSVTIPVMAKARIG--H-FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~G-a~~I~~l~-~~~~d~r~~~G~~~~~~~~~i----~~i~~~~~lPv~~kd~i~--~-~~~~~~~~~aGad  116 (310)
                      +++..+.+.| ++++ .+| .+|.-   .+|-...++++.+    +++++.+++||.+|.--.  + .+.++.+.++|+|
T Consensus       113 d~~~~~~~~~~ad~i-elNiScPnt---~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P~~~di~~iA~~~~~~g~D  188 (310)
T COG0167         113 DYARLLEEAGDADAI-ELNISCPNT---PGGRALGQDPELLEKLLEAVKAATKVPVFVKLAPNITDIDEIAKAAEEAGAD  188 (310)
T ss_pred             HHHHHHHhcCCCCEE-EEEccCCCC---CChhhhccCHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHHHHHHHHcCCc
Confidence            6788899998 8988 788 55541   1122222245544    456667789999995432  1 2345677789999


Q ss_pred             eeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecC-CCCCchHHHHHHHHHhhcceecccccC
Q 037779          117 YVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGE-AGTGNIVEAVRHVRSVMGDIRVLRNMD  195 (310)
Q Consensus       117 ~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~-~~~~~~~~~~~~~~~~~~~~~~l~~~~  195 (310)
                      ++........            +..+...  +.         ++  +--++. ..+|.                      
T Consensus       189 gl~~~NT~~~------------~~~id~~--~~---------~~--~~~~~~GGLSG~----------------------  221 (310)
T COG0167         189 GLIAINTTKS------------GMKIDLE--TK---------KP--VLANETGGLSGP----------------------  221 (310)
T ss_pred             EEEEEeeccc------------ccccccc--cc---------cc--ccCcCCCCcCcc----------------------
Confidence            9873221100            0000000  00         00  000000 01111                      


Q ss_pred             chhHHhhhccCCCcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779          196 DDEVFTFAKNIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       196 ~d~~~~~~~~~~~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                        ++      .....+.++.+.+..  ++|+  |..|||.|.+|+.+.+.+||+.|.|||+++...  ...++++.+.+.
T Consensus       222 --~i------kp~al~~v~~l~~~~~~~ipI--IGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~G--p~i~~~I~~~l~  289 (310)
T COG0167         222 --PL------KPIALRVVAELYKRLGGDIPI--IGVGGIETGEDALEFILAGASAVQVGTALIYKG--PGIVKEIIKGLA  289 (310)
T ss_pred             --cc------hHHHHHHHHHHHHhcCCCCcE--EEecCcCcHHHHHHHHHcCCchheeeeeeeeeC--chHHHHHHHHHH
Confidence              00      012455666666653  5999  667999999999999999999999999999852  234566667777


Q ss_pred             cCCChhhHHhhhhccCC
Q 037779          274 NYSDPDVLAEVSCGLGE  290 (310)
Q Consensus       274 ~~~~~~~~~~~~~~~~~  290 (310)
                      .+.+...+..+.+..|.
T Consensus       290 ~~l~~~g~~si~d~iG~  306 (310)
T COG0167         290 RWLEEKGFESIQDIIGS  306 (310)
T ss_pred             HHHHHcCCCCHHHHhch
Confidence            66666666666655543

>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional

Probab=98.61  E-value=1.5e-06  Score=77.51  Aligned_cols=145  Identities=15%  Similarity=0.173  Sum_probs=89.9

Q ss_pred             HHHHHHHhcCCCCcEEeecCCHH----HHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcc--eecccccCchhH--
Q 037779          128 DEENHINKHNFRVPFVCGCRNLG----ESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGD--IRVLRNMDDDEV--  199 (310)
Q Consensus       128 ~~~~~~~~~~~~l~v~~~v~t~~----ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~d~~--  199 (310)
                      ..++.+++...+..++++.+..+    ++..+.+.|+|++.+|+......+..+++.+++.+..  ...++..+.+.+  
T Consensus        45 ~~i~~lk~~~~~~~v~~DLK~~Di~~~v~~~~~~~Gad~vTvH~~a~~~~i~~~~~~~~~~g~~~~V~llts~~~~~l~~  124 (216)
T PRK13306         45 KAVRVLRALYPDKIIVADTKIADAGKILAKMAFEAGADWVTVICAAHIPTIKAALKVAKEFNGEIQIELYGNWTWEQAQQ  124 (216)
T ss_pred             HHHHHHHHHCCCCEEEEEEeecCCcHHHHHHHHHCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHH
Confidence            44455655445667777754433    3334678999999999766544566777776654432  223333222211  


Q ss_pred             -Hh---------hhc-----cCCCcHHHHHHHHhcCCCCE-EEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHH
Q 037779          200 -FT---------FAK-----NIAAPYDLVMQTKQLGRLPV-VHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVR  263 (310)
Q Consensus       200 -~~---------~~~-----~~~~~~~l~~~i~~~~~iPV-v~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~  263 (310)
                       .+         .+.     +.......+..+++...-.. + .+.||| +++.+....+.|+|.++|||+|++++||.+
T Consensus       125 ~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~~~~~~~i-~V~gGI-~~~~~~~~~~~~ad~~VvGr~I~~a~dp~~  202 (216)
T PRK13306        125 WRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKLSDMGFKV-SVTGGL-VVEDLKLFKGIPVKTFIAGRAIRGAADPAA  202 (216)
T ss_pred             HHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHHhcCCCeE-EEcCCC-CHhhHHHHhcCCCCEEEECCcccCCCCHHH
Confidence             00         001     11112223334444321122 3 458999 599998888899999999999999999999


Q ss_pred             HHHHHHHHHHc
Q 037779          264 RARAIVQAVTN  274 (310)
Q Consensus       264 ~~~~~~~~~~~  274 (310)
                      .++++++.++.
T Consensus       203 a~~~i~~~i~~  213 (216)
T PRK13306        203 AARAFKDEIAK  213 (216)
T ss_pred             HHHHHHHHHHh
Confidence            99999998864

>PRK06852 aldolase; Validated

Probab=98.59  E-value=7.8e-06  Score=76.10  Aligned_cols=210  Identities=18%  Similarity=0.146  Sum_probs=121.9

Q ss_pred             cCCCccccccceeeecCCc--------cccCCCHH-HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhh
Q 037779           20 KKSPFSVKVGLAQMLRGGV--------IMDVVTPE-QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSS   90 (310)
Q Consensus        20 ~~sp~~~~~~~~~~l~~g~--------i~~~~~~~-~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~   90 (310)
                      +.|--...+|+.+-+..|.        +....+++ ..+.+.++|++++. +        .+         -.++.....
T Consensus        28 ~~sGr~~ivp~DHG~~~Gp~~~~~~~~~~gl~dp~~~i~~~~~~g~dav~-~--------~~---------G~l~~~~~~   89 (304)
T PRK06852         28 KGTGRLMLFAGDQKIEHLNDDFYGEGIAKDDADPEHLFRIASKAKIGVFA-T--------QL---------GLIARYGMD   89 (304)
T ss_pred             CCCCCEEEEeccCCcccCCcccccccCCcccCCHHHHHHHHHhcCCCEEE-e--------CH---------HHHHhhccc
Confidence            3444555577777777777        77777775 79999999999983 3        11         133332221


Q ss_pred             -cCcceEeecccc--------------chHHHHHHHHcC------CCeeeecCCC-C---h---hHHHHHHHh-cCCCCc
Q 037779           91 -VTIPVMAKARIG--------------HFVEAQILEAIG------VDYVDESEVL-T---P---ADEENHINK-HNFRVP  141 (310)
Q Consensus        91 -~~lPv~~kd~i~--------------~~~~~~~~~~aG------ad~v~~~~~~-~---~---~~~~~~~~~-~~~~l~  141 (310)
                       .++|++++.--.              -+-.++.+...|      ||+|-.+-.. +   .   .++-+...+ +..|++
T Consensus        90 ~~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlP  169 (304)
T PRK06852         90 YPDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLI  169 (304)
T ss_pred             cCCCcEEEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCc
Confidence             256666651110              011245566777      7787632111 1   1   122222222 446777


Q ss_pred             EEeec----------CCHH----HHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCC
Q 037779          142 FVCGC----------RNLG----ESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIA  207 (310)
Q Consensus       142 v~~~v----------~t~~----ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~  207 (310)
                      +++-+          ++++    -++.+.++|||+|++.-+   +.                               ...
T Consensus       170 ll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~y~---~~-------------------------------~~~  215 (304)
T PRK06852        170 AVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVNYP---KK-------------------------------EGA  215 (304)
T ss_pred             EEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEecCC---Cc-------------------------------CCC
Confidence            76522          1111    134456778888887511   00                               001


Q ss_pred             CcHHHHHHHHhcC-CCCEEEEccCCCC-CH----HHHHHHHH-cCCCEEEEccccccCCCH--HHHHHHHHHHHHcCCCh
Q 037779          208 APYDLVMQTKQLG-RLPVVHFAAGGVA-TP----ADAAMMMQ-LGCDGVFVGSGVFKSGDP--VRRARAIVQAVTNYSDP  278 (310)
Q Consensus       208 ~~~~l~~~i~~~~-~iPVv~ia~GGI~-t~----~di~~~~~-~GadgV~VGsai~~~~dp--~~~~~~~~~~~~~~~~~  278 (310)
                      .+.+..+++.+.+ ++||+ | +||=. +.    +.++.+++ .|+.|+++|+-+++.+||  .++++++...++....+
T Consensus       216 g~~e~f~~vv~~~g~vpVv-i-aGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~p~~~~~~~Ai~~IVH~~~s~  293 (304)
T PRK06852        216 NPAELFKEAVLAAGRTKVV-C-AGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPLDEAVRMCNAIYAITVEDKSV  293 (304)
T ss_pred             CCHHHHHHHHHhCCCCcEE-E-eCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCCchHHHHHHHHHHHHhCCCCH
Confidence            1223344455545 78985 3 56654 22    23556667 899999999999999999  99999999999888776


Q ss_pred             hhHHh
Q 037779          279 DVLAE  283 (310)
Q Consensus       279 ~~~~~  283 (310)
                      ....+
T Consensus       294 ~eA~~  298 (304)
T PRK06852        294 EEALK  298 (304)
T ss_pred             HHHHH
Confidence            55433

>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=98.59  E-value=1.5e-06  Score=75.16  Aligned_cols=179  Identities=21%  Similarity=0.263  Sum_probs=114.4

Q ss_pred             HHHHHHHHcCCcEEEecc-cc-------cchhh-----hcCCCCCCCChHHHHHHHhh-cCcceEeecccc------chH
Q 037779           46 EQARIAEEAGACAVMALE-RV-------PADIR-----AQGGVARMSDPQLIKQIKSS-VTIPVMAKARIG------HFV  105 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~-------~~d~r-----~~~G~~~~~~~~~i~~i~~~-~~lPv~~kd~i~------~~~  105 (310)
                      ...+-+.++|++.| .|. |.       |+-..     -..|....+-.+.+++.|.. +.+|++.....+      ...
T Consensus        36 kilkglq~gG~dII-ELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl~yG~e~  114 (268)
T KOG4175|consen   36 KILKGLQSGGSDII-ELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQGVTCPIILMGYYNPILRYGVEN  114 (268)
T ss_pred             HHHHHHhcCCcCeE-EecCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhcccCcccceeeeecccHHHhhhHHH
Confidence            56777888899877 453 11       11110     01133222334455666665 678998865543      234


Q ss_pred             HHHHHHHcCCCeeeecCCCChhH---HHHHHHhcCCCCcEEeecCCHHHHHHHHHhCC-CEEEEecCCC-CCchHHHHHH
Q 037779          106 EAQILEAIGVDYVDESEVLTPAD---EENHINKHNFRVPFVCGCRNLGESLRRIREGA-AMIRTKGEAG-TGNIVEAVRH  180 (310)
Q Consensus       106 ~~~~~~~aGad~v~~~~~~~~~~---~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Ga-d~I~v~g~~~-~~~~~~~~~~  180 (310)
                      .+|.+..+||++.++.+. +|++   +.+++++|+..+..++...|.+|-..++..-+ .+|.+..+.+ +|.- +.+  
T Consensus       115 ~iq~ak~aGanGfiivDl-PpEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~~adsFiYvVSrmG~TG~~-~sv--  190 (268)
T KOG4175|consen  115 YIQVAKNAGANGFIIVDL-PPEEAETLRNEARKHGISLVPLVAPSTTDERMELLVEAADSFIYVVSRMGVTGTR-ESV--  190 (268)
T ss_pred             HHHHHHhcCCCceEeccC-ChHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHHhhcceEEEEEeccccccH-HHH--
Confidence            668889999999987765 4554   45666777777666666677776555554444 4665543332 2221 000  


Q ss_pred             HHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       181 ~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                                    +           ..-.+++.++++.. +.|+  .+..||+++|+..++-.- +|||+|||.|.+
T Consensus       191 --------------n-----------~~l~~L~qrvrk~t~dtPl--AVGFGvst~EHf~qVgsv-aDGVvvGSkiv~  240 (268)
T KOG4175|consen  191 --------------N-----------EKLQSLLQRVRKATGDTPL--AVGFGVSTPEHFKQVGSV-ADGVVVGSKIVK  240 (268)
T ss_pred             --------------H-----------HHHHHHHHHHHHhcCCCce--eEeeccCCHHHHHhhhhh-ccceEecHHHHH
Confidence                          0           11356788888864 8898  568999999999999888 999999998875

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=98.55  E-value=3.5e-07  Score=87.11  Aligned_cols=55  Identities=22%  Similarity=0.334  Sum_probs=44.2

Q ss_pred             cHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc-CCCHHHHH
Q 037779          209 PYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK-SGDPVRRA  265 (310)
Q Consensus       209 ~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~-~~dp~~~~  265 (310)
                      .++.+..+++..  ++||  |+.|||.|++|+.+++.+|||+|++||+++. .++....+
T Consensus       275 ~l~~v~~l~~~~~~~ipI--ig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i  332 (344)
T PRK05286        275 STEVIRRLYKELGGRLPI--IGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEI  332 (344)
T ss_pred             HHHHHHHHHHHhCCCCCE--EEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHH
Confidence            455677777655  6899  6789999999999999999999999999975 46654433

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.53  E-value=1.3e-06  Score=87.00  Aligned_cols=126  Identities=14%  Similarity=0.171  Sum_probs=84.7

Q ss_pred             hHHHHHHHHcCCCeeeec--CCC--ChhHHHHHHHhcCCC-CcEEee-cCCHHHHHHHHHhCCCEEEEe-cC--CCCCch
Q 037779          104 FVEAQILEAIGVDYVDES--EVL--TPADEENHINKHNFR-VPFVCG-CRNLGESLRRIREGAAMIRTK-GE--AGTGNI  174 (310)
Q Consensus       104 ~~~~~~~~~aGad~v~~~--~~~--~~~~~~~~~~~~~~~-l~v~~~-v~t~~ea~~a~~~Gad~I~v~-g~--~~~~~~  174 (310)
                      .+.++.+.++|+|.+.++  ..-  ...+.++.++++.++ +.++++ +-|.++++.++++|||+|++. |+  .++.. 
T Consensus       244 ~~ra~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr-  322 (502)
T PRK07107        244 AERVPALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITR-  322 (502)
T ss_pred             HHHHHHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccc-
Confidence            356788899999998743  111  123556667664443 677774 889999999999999999884 22  22221 


Q ss_pred             HHHHHHHHHhhcceecccccCchhHHhhhccCCC-cHHHHHHHHhc--------C-CCCEEEEccCCCCCHHHHHHHHHc
Q 037779          175 VEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAA-PYDLVMQTKQL--------G-RLPVVHFAAGGVATPADAAMMMQL  244 (310)
Q Consensus       175 ~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~-~~~l~~~i~~~--------~-~iPVv~ia~GGI~t~~di~~~~~~  244 (310)
                                     ...            +.+. ....+..+.+.        . ++||  |+.|||.+..|+.+++.+
T Consensus       323 ---------------~~~------------~~g~~~~~ai~~~~~a~~~~~~~~g~~~~v--iadgGir~~gdi~KAla~  373 (502)
T PRK07107        323 ---------------EQK------------GIGRGQATALIEVAKARDEYFEETGVYIPI--CSDGGIVYDYHMTLALAM  373 (502)
T ss_pred             ---------------ccc------------CCCccHHHHHHHHHHHHHHHHhhcCCcceE--EEcCCCCchhHHHHHHHc
Confidence                           000            1111 12222222221        1 3898  779999999999999999


Q ss_pred             CCCEEEEccccccCC
Q 037779          245 GCDGVFVGSGVFKSG  259 (310)
Q Consensus       245 GadgV~VGsai~~~~  259 (310)
                      |||+|++|+.|..+.
T Consensus       374 GA~~vm~G~~~ag~~  388 (502)
T PRK07107        374 GADFIMLGRYFARFD  388 (502)
T ss_pred             CCCeeeeChhhhccc
Confidence            999999999998854

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2

Probab=98.52  E-value=6.3e-07  Score=84.80  Aligned_cols=52  Identities=19%  Similarity=0.352  Sum_probs=42.7

Q ss_pred             cHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC-CCHH
Q 037779          209 PYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS-GDPV  262 (310)
Q Consensus       209 ~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~-~dp~  262 (310)
                      .++.+..+++..  ++||  |+.|||.|++|+.+++.+|||+|++||+++.. ++..
T Consensus       266 ~l~~v~~l~~~~~~~ipI--i~~GGI~t~~da~e~l~aGAd~V~vg~~~~~~gP~~~  320 (327)
T cd04738         266 STEVLRELYKLTGGKIPI--IGVGGISSGEDAYEKIRAGASLVQLYTGLVYEGPGLV  320 (327)
T ss_pred             HHHHHHHHHHHhCCCCcE--EEECCCCCHHHHHHHHHcCCCHHhccHHHHhhCcHHH
Confidence            356677777765  6899  67899999999999999999999999999763 5543

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=98.51  E-value=3.9e-06  Score=79.11  Aligned_cols=55  Identities=25%  Similarity=0.383  Sum_probs=46.8

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccCCCHHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSGDPVRRA  265 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~~dp~~~~  265 (310)
                      ..+.++.+++..++||  ++.|||.+++++.++++. |+|.|++|++++..+|....+
T Consensus       269 ~~~~~~~ir~~~~iPV--i~~Ggi~t~~~a~~~l~~g~aD~V~igR~~ladP~l~~k~  324 (327)
T cd02803         269 FLELAEKIKKAVKIPV--IAVGGIRDPEVAEEILAEGKADLVALGRALLADPDLPNKA  324 (327)
T ss_pred             hHHHHHHHHHHCCCCE--EEeCCCCCHHHHHHHHHCCCCCeeeecHHHHhCccHHHHH
Confidence            4567777877778999  678999999999999998 899999999999988766554

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=98.48  E-value=1e-06  Score=83.56  Aligned_cols=45  Identities=27%  Similarity=0.451  Sum_probs=37.1

Q ss_pred             HHHHHHh-cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          212 LVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       212 l~~~i~~-~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      .+..+.+ ..++||  |++|||.++.++.+++.+|||+|.+|++++.+
T Consensus       244 ~l~~~~~~~~~ipV--IasGGI~~~~di~kaLalGAd~V~igr~~L~~  289 (333)
T TIGR02151       244 SLLEVRSDAPDAPI--IASGGLRTGLDVAKAIALGADAVGMARPFLKA  289 (333)
T ss_pred             HHHHHHhcCCCCeE--EEECCCCCHHHHHHHHHhCCCeehhhHHHHHH
Confidence            3444444 346888  78999999999999999999999999999953

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed

Probab=98.47  E-value=3.1e-07  Score=86.30  Aligned_cols=76  Identities=21%  Similarity=0.196  Sum_probs=54.1

Q ss_pred             HHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChhhHHhhhhc
Q 037779          210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCG  287 (310)
Q Consensus       210 ~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (310)
                      ...+..+.+..  ++||  |+.|||.|.+|+.+.+.+||+.|+++|+++... | ...+.+.+.+..|.+...+..+.+.
T Consensus       228 l~~v~~~~~~~~~~ipI--ig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~g-p-~~~~~i~~~L~~~l~~~g~~si~e~  303 (310)
T PRK02506        228 LANVRAFYQRLNPSIQI--IGTGGVKTGRDAFEHILCGASMVQVGTALHKEG-P-AVFERLTKELKAIMAEKGYQSLEDF  303 (310)
T ss_pred             HHHHHHHHHhcCCCCCE--EEECCCCCHHHHHHHHHcCCCHHhhhHHHHHhC-h-HHHHHHHHHHHHHHHHhCCCCHHHH
Confidence            34455554433  6899  678999999999999999999999999998732 2 3455566666666555555555554


Q ss_pred             cC
Q 037779          288 LG  289 (310)
Q Consensus       288 ~~  289 (310)
                      .|
T Consensus       304 ~G  305 (310)
T PRK02506        304 RG  305 (310)
T ss_pred             hC
Confidence            44

>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional

Probab=98.47  E-value=9.7e-06  Score=71.96  Aligned_cols=46  Identities=28%  Similarity=0.514  Sum_probs=40.6

Q ss_pred             ccCCCCCHH--HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          228 AAGGVATPA--DAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       228 a~GGI~t~~--di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      +.|||+ ++  ++..++++|+|.+++||+|++++||.+.++++++.++.
T Consensus       167 vdgGI~-~~g~~~~~~~~aGad~iV~Gr~I~~~~d~~~~~~~l~~~~~~  214 (215)
T PRK13813        167 ISPGIG-AQGGKAADAIKAGADYVIVGRSIYNAADPREAAKAINEEIRG  214 (215)
T ss_pred             EeCCcC-CCCCCHHHHHHcCCCEEEECcccCCCCCHHHHHHHHHHHHhc
Confidence            469996 54  59999999999999999999999999999999987753

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=98.46  E-value=2e-06  Score=82.03  Aligned_cols=98  Identities=18%  Similarity=0.257  Sum_probs=74.5

Q ss_pred             HHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCC
Q 037779          128 DEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIA  207 (310)
Q Consensus       128 ~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~  207 (310)
                      +.++.++++-....++-++-+.++++++.+.|+|.|.+.+..++.                  +..            ..
T Consensus       226 ~~i~~ir~~~~~pviiKgV~~~eda~~a~~~G~d~I~VSnhGGrq------------------ld~------------~~  275 (361)
T cd04736         226 QDLRWLRDLWPHKLLVKGIVTAEDAKRCIELGADGVILSNHGGRQ------------------LDD------------AI  275 (361)
T ss_pred             HHHHHHHHhCCCCEEEecCCCHHHHHHHHHCCcCEEEECCCCcCC------------------CcC------------Cc
Confidence            345666664444556668999999999999999999887654421                  100            12


Q ss_pred             CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                      .+.+.+..+.+..++||  |++|||.++.|+.+++.+||++|++|+.++.
T Consensus       276 ~~~~~L~ei~~~~~~~v--i~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~  323 (361)
T cd04736         276 APIEALAEIVAATYKPV--LIDSGIRRGSDIVKALALGANAVLLGRATLY  323 (361)
T ss_pred             cHHHHHHHHHHHhCCeE--EEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence            34666667766556888  6799999999999999999999999999985

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=98.43  E-value=2.3e-05  Score=74.59  Aligned_cols=89  Identities=20%  Similarity=0.404  Sum_probs=64.2

Q ss_pred             CCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHH
Q 037779          139 RVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTK  217 (310)
Q Consensus       139 ~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~  217 (310)
                      ++++++ ++.+.++++++.+.|+|.|.+.+..++.                  +..            ...+.+.+..+.
T Consensus       213 ~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhgG~~------------------~d~------------~~~~~~~L~~i~  262 (344)
T cd02922         213 KLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHGGRQ------------------LDT------------APAPIEVLLEIR  262 (344)
T ss_pred             CCcEEEEcCCCHHHHHHHHHcCCCEEEEECCCccc------------------CCC------------CCCHHHHHHHHH
Confidence            456555 6889999999999999999887654321                  000            011233333333


Q ss_pred             h----c-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          218 Q----L-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       218 ~----~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                      +    . .++||  |++|||.+..|+.+++.+||++|.+|++++.+.
T Consensus       263 ~~~~~~~~~~~v--i~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l  307 (344)
T cd02922         263 KHCPEVFDKIEV--YVDGGVRRGTDVLKALCLGAKAVGLGRPFLYAL  307 (344)
T ss_pred             HHHHHhCCCceE--EEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence            2    1 25888  679999999999999999999999999998853

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=98.42  E-value=6.6e-06  Score=77.86  Aligned_cols=194  Identities=20%  Similarity=0.210  Sum_probs=107.3

Q ss_pred             CHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC-cceEeecccc-----chHHHH-HHHHcCCC
Q 037779           44 TPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT-IPVMAKARIG-----HFVEAQ-ILEAIGVD  116 (310)
Q Consensus        44 ~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~-lPv~~kd~i~-----~~~~~~-~~~~aGad  116 (310)
                      ++++|+...+.|.-.-  +    .+.+..  .......+.++.+|.... .|++++.+..     .++.++ ....++||
T Consensus        71 n~~La~~a~~~g~~~~--~----Gs~~~~--~~~~e~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~ad  142 (326)
T cd02811          71 NRNLAEAAEELGIAMG--V----GSQRAA--LEDPELAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEAD  142 (326)
T ss_pred             HHHHHHHHHHcCCCeE--e----cCchhh--ccChhhhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCC
Confidence            4688999999984321  1    011100  000001234556666654 9998886653     234443 33347888


Q ss_pred             eeeecC----------CC-ChhHHHHHHHh--cCCCCcEEeec----CCHHHHHHHHHhCCCEEEEecCCCCCchHHHHH
Q 037779          117 YVDESE----------VL-TPADEENHINK--HNFRVPFVCGC----RNLGESLRRIREGAAMIRTKGEAGTGNIVEAVR  179 (310)
Q Consensus       117 ~v~~~~----------~~-~~~~~~~~~~~--~~~~l~v~~~v----~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~  179 (310)
                      ++.++-          .. ....+.+.++.  ...++++++..    .+.++++.+.+.|+|+|.+.|..++. +. ..+
T Consensus       143 alel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GGt~-~~-~ie  220 (326)
T cd02811         143 ALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTS-WA-RVE  220 (326)
T ss_pred             cEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCc-cc-ccc
Confidence            865221          00 11112233333  22467777742    67889999999999999998753332 10 000


Q ss_pred             HHHHhhcceecccccCchhHHhhhccCCC-cHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          180 HVRSVMGDIRVLRNMDDDEVFTFAKNIAA-PYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       180 ~~~~~~~~~~~l~~~~~d~~~~~~~~~~~-~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                      ..+....+......+         .++.. ..+.+..+.+.. ++||  |++|||.++.|+.+++.+|||+|.+|++|++
T Consensus       221 ~~r~~~~~~~~~~~~---------~~~g~~t~~~l~~~~~~~~~ipI--iasGGIr~~~dv~kal~lGAd~V~i~~~~L~  289 (326)
T cd02811         221 NYRAKDSDQRLAEYF---------ADWGIPTAASLLEVRSALPDLPL--IASGGIRNGLDIAKALALGADLVGMAGPFLK  289 (326)
T ss_pred             ccccccccccccccc---------ccccccHHHHHHHHHHHcCCCcE--EEECCCCCHHHHHHHHHhCCCEEEEcHHHHH
Confidence            000000000000000         01111 234555555544 7899  7799999999999999999999999998876


Q ss_pred             C
Q 037779          258 S  258 (310)
Q Consensus       258 ~  258 (310)
                      +
T Consensus       290 ~  290 (326)
T cd02811         290 A  290 (326)
T ss_pred             H
Confidence            4

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=98.41  E-value=3.1e-06  Score=80.93  Aligned_cols=100  Identities=22%  Similarity=0.295  Sum_probs=71.1

Q ss_pred             ChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779          125 TPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA  203 (310)
Q Consensus       125 ~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  203 (310)
                      +.++ ++.+++. .++++++ ++.+.++++++.+.|+|.|.+.+..+.                  .+..          
T Consensus       216 ~w~~-i~~l~~~-~~~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGGr------------------q~~~----------  265 (367)
T TIGR02708       216 SPRD-IEEIAGY-SGLPVYVKGPQCPEDADRALKAGASGIWVTNHGGR------------------QLDG----------  265 (367)
T ss_pred             CHHH-HHHHHHh-cCCCEEEeCCCCHHHHHHHHHcCcCEEEECCcCcc------------------CCCC----------
Confidence            4433 4444442 3466666 578899999999999998877544321                  1110          


Q ss_pred             ccCCCcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          204 KNIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       204 ~~~~~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                        ...+++.+..+.+..  ++||  |++|||.+..|+.+++.+||++|++|+.++.+
T Consensus       266 --~~a~~~~L~ei~~av~~~i~v--i~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~  318 (367)
T TIGR02708       266 --GPAAFDSLQEVAEAVDKRVPI--VFDSGVRRGQHVFKALASGADLVALGRPVIYG  318 (367)
T ss_pred             --CCcHHHHHHHHHHHhCCCCcE--EeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHH
Confidence              123466677776643  5899  67999999999999999999999999997774

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>PLN02535 glycolate oxidase

Probab=98.40  E-value=3.5e-06  Score=80.47  Aligned_cols=100  Identities=23%  Similarity=0.354  Sum_probs=71.7

Q ss_pred             ChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779          125 TPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA  203 (310)
Q Consensus       125 ~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  203 (310)
                      +.++ ++.+++. .++++++ ++-+.++++++.+.|+|.|.+.+..+..                  +..          
T Consensus       211 tW~~-i~~lr~~-~~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~GGr~------------------~d~----------  260 (364)
T PLN02535        211 SWKD-IEWLRSI-TNLPILIKGVLTREDAIKAVEVGVAGIIVSNHGARQ------------------LDY----------  260 (364)
T ss_pred             CHHH-HHHHHhc-cCCCEEEecCCCHHHHHHHHhcCCCEEEEeCCCcCC------------------CCC----------
Confidence            4433 4445442 4577777 5889999999999999999887553210                  000          


Q ss_pred             ccCCCcHHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          204 KNIAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       204 ~~~~~~~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                        ...+.+.+..+.+.  .++||  |++|||.++.|+.+++.+||++|++|+.++.+
T Consensus       261 --~~~t~~~L~ev~~av~~~ipV--i~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~  313 (364)
T PLN02535        261 --SPATISVLEEVVQAVGGRVPV--LLDGGVRRGTDVFKALALGAQAVLVGRPVIYG  313 (364)
T ss_pred             --ChHHHHHHHHHHHHHhcCCCE--EeeCCCCCHHHHHHHHHcCCCEEEECHHHHhh
Confidence              01134555555543  26899  67999999999999999999999999999874

>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase

Probab=98.39  E-value=2.9e-06  Score=77.89  Aligned_cols=90  Identities=20%  Similarity=0.230  Sum_probs=63.2

Q ss_pred             hHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhcc
Q 037779          127 ADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN  205 (310)
Q Consensus       127 ~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  205 (310)
                      ...++.+++ .+++..+.++++|.+|+..+.+.|+|||.+... +                         ++.       
T Consensus       165 ~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~gaDyI~ld~~-~-------------------------~e~-------  211 (265)
T TIGR00078       165 EKAVKRARAAAPFALKIEVEVESLEEAEEAAEAGADIIMLDNM-K-------------------------PEE-------  211 (265)
T ss_pred             HHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCC-C-------------------------HHH-------
Confidence            344555555 344688999999999999999999999998421 1                         000       


Q ss_pred             CCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          206 IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       206 ~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                         ..+..+.++  ..+|+  .|.||| +++++.++.++|+|++.+ |+++.+
T Consensus       212 ---lk~~v~~~~--~~ipi--~AsGGI-~~~ni~~~a~~Gvd~Isv-gait~s  255 (265)
T TIGR00078       212 ---IKEAVQLLK--GRVLL--EASGGI-TLDNLEEYAETGVDVISS-GALTHS  255 (265)
T ss_pred             ---HHHHHHHhc--CCCcE--EEECCC-CHHHHHHHHHcCCCEEEe-CHHHcC
Confidence               011122221  13788  567999 699999999999999999 556653

Synonym: quinolinate phosphoribosyltransferase (decarboxylating)

>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3

Probab=98.39  E-value=7.6e-06  Score=77.96  Aligned_cols=55  Identities=29%  Similarity=0.306  Sum_probs=46.4

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccCCCHHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSGDPVRRA  265 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~~dp~~~~  265 (310)
                      .+++.+.+++..++||  ++.|||.+++++.++++. ++|.|++|+.++..++....+
T Consensus       273 ~~~~~~~ik~~~~ipv--i~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~  328 (343)
T cd04734         273 FLPLAARIKQAVDLPV--FHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLVAKA  328 (343)
T ss_pred             hHHHHHHHHHHcCCCE--EeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHHHHH
Confidence            3667778888778999  678999999999999986 599999999999988765443

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.

>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]

Probab=98.36  E-value=1.6e-05  Score=73.84  Aligned_cols=215  Identities=20%  Similarity=0.249  Sum_probs=132.7

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcC-CCCCCCChHHHHHHHhhcCcceEeeccccc-----------hHHHHHHHH
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQG-GVARMSDPQLIKQIKSSVTIPVMAKARIGH-----------FVEAQILEA  112 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~-G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~-----------~~~~~~~~~  112 (310)
                      .+++++|-..||+.++.||.  |..|.+- |.  .+-++.+++..+.+-+|+.+...|.+           .+-+..++.
T Consensus       272 V~Laq~Yyq~GADEv~FLNI--TsFRdcPl~D--~PMlqVL~qaaktVFVPLTVGGGIrD~~D~dGt~~palEVA~~YFR  347 (541)
T KOG0623|consen  272 VDLAQQYYQDGADEVSFLNI--TSFRDCPLGD--LPMLQVLRQAAKTVFVPLTVGGGIRDFTDADGTYYPALEVAAEYFR  347 (541)
T ss_pred             HHHHHHHHhcCCceeEEEee--ccccCCCccc--ChHHHHHHHhhceEEEEEeecCcccccccCCCcCchhHHHHHHHHh
Confidence            48899999999999988861  1112111 22  12245566666667789998655521           134566777


Q ss_pred             cCCCeee-ecCCCChh-H------------HHHHHHhcCCCCcEEeecC-------CHHHH----HHHHHhCC---CEE-
Q 037779          113 IGVDYVD-ESEVLTPA-D------------EENHINKHNFRVPFVCGCR-------NLGES----LRRIREGA---AMI-  163 (310)
Q Consensus       113 aGad~v~-~~~~~~~~-~------------~~~~~~~~~~~l~v~~~v~-------t~~ea----~~a~~~Ga---d~I-  163 (310)
                      .|||.|. .++..... .            -++.+++..-+.-+++++.       .+++.    .+....|+   .|+ 
T Consensus       348 SGADKvSIGsDAVyAAEkyye~G~k~~Gks~iEtISkaYGnQAVViSvDPkRvYVn~p~Dtk~kV~~t~~pGPNGE~YcW  427 (541)
T KOG0623|consen  348 SGADKVSIGSDAVYAAEKYYESGVKGTGKSSIETISKAYGNQAVVISVDPKRVYVNHPDDTKYKVIRTTNPGPNGEEYCW  427 (541)
T ss_pred             cCCceeeechhHHHHHHHHHHhccCCCCcChHHHHHHHhCCeeEEEEeCCceeeecCCccCcceEEEecCCCCCCceeEE
Confidence            9999987 33221111 1            1122222111233333331       11111    11111222   121 


Q ss_pred             ---EEe-cCCCCC-chHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHH
Q 037779          164 ---RTK-GEAGTG-NIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADA  238 (310)
Q Consensus       164 ---~v~-g~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di  238 (310)
                         .+. |+.+.. ...+.-+++..+++....+..++.|+.     +.+.+.++++.++....|||  ||++|-++|++.
T Consensus       428 YQCTvkGGRE~Rdigv~ELtrAcEalGAGEiLLNCiD~DGs-----n~GyDieLv~lvkdsV~IPV--IASSGAG~P~HF  500 (541)
T KOG0623|consen  428 YQCTVKGGREGRDIGVFELTRACEALGAGEILLNCIDCDGS-----NKGYDIELVKLVKDSVGIPV--IASSGAGTPDHF  500 (541)
T ss_pred             EEEEEcCCcccCccchhhHHHHHHHhCcchheeeeeccCCC-----CCCcchhHHHHhhcccCCce--EecCCCCCcHHH
Confidence               122 221111 135777888889999888888887764     45678999999999889999  789999999999


Q ss_pred             HHHHH-cCCCEEEEccccccCCCHHHHHHHHHH
Q 037779          239 AMMMQ-LGCDGVFVGSGVFKSGDPVRRARAIVQ  270 (310)
Q Consensus       239 ~~~~~-~GadgV~VGsai~~~~dp~~~~~~~~~  270 (310)
                      .++.+ ..||+.+....|.+.+-|.+-+++++.
T Consensus       501 eEvF~kT~adAaLaAGiFHR~e~~i~dVKEyL~  533 (541)
T KOG0623|consen  501 EEVFEKTNADAALAAGIFHRKEVPIQDVKEYLQ  533 (541)
T ss_pred             HHHHHhcCchhhhhccceecCccchHHHHHHHH
Confidence            99885 799999999999988877766666544

>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=98.36  E-value=3.9e-06  Score=77.20  Aligned_cols=90  Identities=17%  Similarity=0.204  Sum_probs=65.6

Q ss_pred             hHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhcc
Q 037779          127 ADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN  205 (310)
Q Consensus       127 ~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  205 (310)
                      ...++.+++ .+++..+.++++|.+|+..+.+.|+|||.+... +                                   
T Consensus       169 ~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~gaDyI~ld~~-~-----------------------------------  212 (268)
T cd01572         169 TEAVRRARAAAPFTLKIEVEVETLEQLKEALEAGADIIMLDNM-S-----------------------------------  212 (268)
T ss_pred             HHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHcCCCEEEECCc-C-----------------------------------
Confidence            344455555 334678999999999999999999999998411 1                                   


Q ss_pred             CCCcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          206 IAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       206 ~~~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                          .+.++++.+..  ++|+  .|.||| +++++.++.++|+|++.+|+..+.++
T Consensus       213 ----~e~l~~~~~~~~~~ipi--~AiGGI-~~~ni~~~a~~Gvd~Iav~sl~~~a~  261 (268)
T cd01572         213 ----PEELREAVALLKGRVLL--EASGGI-TLENIRAYAETGVDYISVGALTHSAP  261 (268)
T ss_pred             ----HHHHHHHHHHcCCCCcE--EEECCC-CHHHHHHHHHcCCCEEEEEeeecCCC
Confidence                12222222221  5798  567999 69999999999999999999776543

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.35  E-value=5e-06  Score=76.71  Aligned_cols=90  Identities=14%  Similarity=0.103  Sum_probs=64.5

Q ss_pred             hhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779          126 PADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK  204 (310)
Q Consensus       126 ~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  204 (310)
                      ..+.++.+++ .+.+..+.++++|.+|+..+.+.|+|||.+..  .                                  
T Consensus       174 ~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~gaDyI~lD~--~----------------------------------  217 (277)
T PRK08072        174 ITKAVTSVREKLGHMVKIEVETETEEQVREAVAAGADIIMFDN--R----------------------------------  217 (277)
T ss_pred             HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECC--C----------------------------------
Confidence            3444555555 33457899999999999999999999998731  0                                  


Q ss_pred             cCCCcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          205 NIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       205 ~~~~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                          ..+.++++.+..  ++|+  .|.||| +++++.++.++|+|+|.+|+-.+.+
T Consensus       218 ----~~e~l~~~~~~~~~~i~i--~AiGGI-t~~ni~~~a~~Gvd~IAvg~l~~sa  266 (277)
T PRK08072        218 ----TPDEIREFVKLVPSAIVT--EASGGI-TLENLPAYGGTGVDYISLGFLTHSV  266 (277)
T ss_pred             ----CHHHHHHHHHhcCCCceE--EEECCC-CHHHHHHHHHcCCCEEEEChhhcCC
Confidence                112233333322  3455  567999 6999999999999999999966544

>PLN02826 dihydroorotate dehydrogenase

Probab=98.35  E-value=3.4e-06  Score=81.89  Aligned_cols=76  Identities=18%  Similarity=0.305  Sum_probs=53.5

Q ss_pred             HHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChhhHHhhhhc
Q 037779          210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCG  287 (310)
Q Consensus       210 ~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (310)
                      .+.+..+.+..  ++||  |+.|||.|.+|+.+.+.+||+.|.++|+++... | ..++.+.+.+..+.....+..+.+.
T Consensus       328 l~~v~~l~~~~~~~ipI--IgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~G-p-~~i~~I~~eL~~~l~~~G~~si~e~  403 (409)
T PLN02826        328 TEVLREMYRLTRGKIPL--VGCGGVSSGEDAYKKIRAGASLVQLYTAFAYEG-P-ALIPRIKAELAACLERDGFKSIQEA  403 (409)
T ss_pred             HHHHHHHHHHhCCCCcE--EEECCCCCHHHHHHHHHhCCCeeeecHHHHhcC-H-HHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            45556665543  6899  667999999999999999999999999988742 3 3555566666554444444444444


Q ss_pred             cC
Q 037779          288 LG  289 (310)
Q Consensus       288 ~~  289 (310)
                      .|
T Consensus       404 iG  405 (409)
T PLN02826        404 VG  405 (409)
T ss_pred             hC
Confidence            44

>PRK13523 NADPH dehydrogenase NamA; Provisional

Probab=98.35  E-value=1.3e-05  Score=76.24  Aligned_cols=55  Identities=18%  Similarity=0.238  Sum_probs=46.5

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRA  265 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~  265 (310)
                      .+++.+.+++..++||  ++.|+|.+++++.++++.| +|.|++|++++..++....+
T Consensus       263 ~~~~~~~ik~~~~ipV--i~~G~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~  318 (337)
T PRK13523        263 QVPFAEHIREHANIAT--GAVGLITSGAQAEEILQNNRADLIFIGRELLRNPYFPRIA  318 (337)
T ss_pred             cHHHHHHHHhhcCCcE--EEeCCCCCHHHHHHHHHcCCCChHHhhHHHHhCccHHHHH
Confidence            4567778888778999  5689999999999999976 99999999999987765444

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4

Probab=98.33  E-value=6.4e-06  Score=78.77  Aligned_cols=54  Identities=31%  Similarity=0.497  Sum_probs=43.2

Q ss_pred             HHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHH
Q 037779          211 DLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       211 ~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~  266 (310)
                      .....+++..  ++||  |+.|||.|++++.++++.|+|.|++|++++..+|....++
T Consensus       272 ~~~~~ik~~~~~~iPV--i~~Ggi~t~e~ae~~l~~gaD~V~~gR~liadPdl~~k~~  327 (353)
T cd04735         272 TIMELVKERIAGRLPL--IAVGSINTPDDALEALETGADLVAIGRGLLVDPDWVEKIK  327 (353)
T ss_pred             HHHHHHHHHhCCCCCE--EEECCCCCHHHHHHHHHcCCChHHHhHHHHhCccHHHHHH
Confidence            3444455433  6899  6689999999999999999999999999999888765543

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=98.33  E-value=4.7e-06  Score=76.75  Aligned_cols=94  Identities=19%  Similarity=0.228  Sum_probs=65.6

Q ss_pred             hhHHHHHHHhcC-CCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779          126 PADEENHINKHN-FRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK  204 (310)
Q Consensus       126 ~~~~~~~~~~~~-~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  204 (310)
                      ....++.+++.. ++..+.++++|++|+..+.+.|+|+|.+... +.                         +.      
T Consensus       167 ~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~-~~-------------------------e~------  214 (269)
T cd01568         167 ITEAVKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNM-SP-------------------------EE------  214 (269)
T ss_pred             HHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCC-CH-------------------------HH------
Confidence            344556666633 3688999999999999999999999998421 10                         00      


Q ss_pred             cCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          205 NIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       205 ~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                          ..+.++.+++..++|+  .+.||| |++++.++.++|+|++.+|+.++..
T Consensus       215 ----l~~~v~~i~~~~~i~i--~asGGI-t~~ni~~~a~~Gad~Isvgal~~s~  261 (269)
T cd01568         215 ----LKEAVKLLKGLPRVLL--EASGGI-TLENIRAYAETGVDVISTGALTHSA  261 (269)
T ss_pred             ----HHHHHHHhccCCCeEE--EEECCC-CHHHHHHHHHcCCCEEEEcHHHcCC
Confidence                0112222322235787  567999 6999999999999999997655543

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>PLN02979 glycolate oxidase

Probab=98.33  E-value=3.8e-05  Score=73.06  Aligned_cols=95  Identities=25%  Similarity=0.414  Sum_probs=69.4

Q ss_pred             HHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCC
Q 037779          130 ENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAA  208 (310)
Q Consensus       130 ~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~  208 (310)
                      ++.++++ -++++++ ++.+.++++++.+.|+|.|.+.+..+..                  +..            ...
T Consensus       215 l~wlr~~-~~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrq------------------ld~------------~p~  263 (366)
T PLN02979        215 VQWLQTI-TKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQ------------------LDY------------VPA  263 (366)
T ss_pred             HHHHHhc-cCCCEEeecCCCHHHHHHHHhcCCCEEEECCCCcCC------------------CCC------------chh
Confidence            3444442 2466666 5889999999999999999887653321                  100            112


Q ss_pred             cHHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          209 PYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       209 ~~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                      +.+.+..+.+.  .++||  |++|||.+..|+.+++.+||++|.+|+.++.
T Consensus       264 t~~~L~ei~~~~~~~~~V--i~dGGIr~G~Di~KALALGAdaV~iGrp~L~  312 (366)
T PLN02979        264 TISALEEVVKATQGRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVF  312 (366)
T ss_pred             HHHHHHHHHHHhCCCCeE--EEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence            35556656443  35888  6799999999999999999999999999885

>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein

Probab=98.31  E-value=3.2e-05  Score=69.05  Aligned_cols=49  Identities=24%  Similarity=0.454  Sum_probs=43.7

Q ss_pred             CcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          208 APYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       208 ~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      .+.+.++.+++.. ++|+  +..|||.+++++++++++|||+|++||.+.+.
T Consensus       165 v~~e~i~~v~~~~~~~pl--~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~d  214 (223)
T TIGR01768       165 VPPELVAEVKKVLDKARL--FVGGGIRSVEKAREMAEAGADTIVTGNVIEED  214 (223)
T ss_pred             cCHHHHHHHHHHcCCCCE--EEecCCCCHHHHHHHHHcCCCEEEECcHHhhC
Confidence            3578888888875 7899  56999999999999999999999999999984

This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.

>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.30  E-value=6.8e-06  Score=75.83  Aligned_cols=90  Identities=18%  Similarity=0.235  Sum_probs=65.7

Q ss_pred             hHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccC
Q 037779          127 ADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNI  206 (310)
Q Consensus       127 ~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  206 (310)
                      ...++.+++..++..+.++++|.+|+..+.+.|+|||.....                          +           
T Consensus       177 ~~av~~~r~~~~~~~I~VEv~tleea~eA~~~gaD~I~LD~~--------------------------~-----------  219 (277)
T PRK05742        177 AQAVAAAHRIAPGKPVEVEVESLDELRQALAAGADIVMLDEL--------------------------S-----------  219 (277)
T ss_pred             HHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHcCCCEEEECCC--------------------------C-----------
Confidence            344455555445688999999999999999999999987311                          1           


Q ss_pred             CCcHHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          207 AAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       207 ~~~~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                         .+.++++.+.  .++|+  .|+||| +++++.++.++|+|++.+|+..+.++
T Consensus       220 ---~e~l~~~v~~~~~~i~l--eAsGGI-t~~ni~~~a~tGvD~Isvg~lt~s~~  268 (277)
T PRK05742        220 ---LDDMREAVRLTAGRAKL--EASGGI-NESTLRVIAETGVDYISIGAMTKDVK  268 (277)
T ss_pred             ---HHHHHHHHHHhCCCCcE--EEECCC-CHHHHHHHHHcCCCEEEEChhhcCCc
Confidence               1111222121  36788  568999 69999999999999999999776654

>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport

Probab=98.29  E-value=4.2e-06  Score=77.16  Aligned_cols=92  Identities=20%  Similarity=0.237  Sum_probs=64.3

Q ss_pred             hHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccC
Q 037779          127 ADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNI  206 (310)
Q Consensus       127 ~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  206 (310)
                      .+.++.+++..++..+.++++|.+|+..+.+.|+|+|.+. +.+...                                 
T Consensus       171 ~~av~~~R~~~~~~~IgVev~t~eea~~A~~~gaD~I~ld-~~~p~~---------------------------------  216 (272)
T cd01573         171 LKALARLRATAPEKKIVVEVDSLEEALAAAEAGADILQLD-KFSPEE---------------------------------  216 (272)
T ss_pred             HHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHcCCCEEEEC-CCCHHH---------------------------------
Confidence            3455555554455788999999999999999999999985 211100                                 


Q ss_pred             CCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          207 AAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       207 ~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                        ..++.+.+++. .++|+  +|.||| +++++.++.++|+|+|+ .|+++.+
T Consensus       217 --l~~~~~~~~~~~~~i~i--~AsGGI-~~~ni~~~~~~Gvd~I~-vsai~~a  263 (272)
T cd01573         217 --LAELVPKLRSLAPPVLL--AAAGGI-NIENAAAYAAAGADILV-TSAPYYA  263 (272)
T ss_pred             --HHHHHHHHhccCCCceE--EEECCC-CHHHHHHHHHcCCcEEE-EChhhcC
Confidence              12333334432 35788  567999 69999999999999994 4555544

In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.

>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.29  E-value=7.4e-06  Score=75.43  Aligned_cols=96  Identities=17%  Similarity=0.211  Sum_probs=68.3

Q ss_pred             ChhHHHHHHHhcCC-CCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779          125 TPADEENHINKHNF-RVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA  203 (310)
Q Consensus       125 ~~~~~~~~~~~~~~-~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  203 (310)
                      +..+.++.++.+.+ ...+.+++.|.+|++.++++|+|+|...+.                          +++.     
T Consensus       167 ~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~GaDiI~LDn~--------------------------~~e~-----  215 (273)
T PRK05848        167 DLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNAGADIVMCDNM--------------------------SVEE-----  215 (273)
T ss_pred             cHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcCCCEEEECCC--------------------------CHHH-----
Confidence            34566667766555 488999999999999999999999987422                          1000     


Q ss_pred             ccCCCcHHHHHHHHh-cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          204 KNIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       204 ~~~~~~~~l~~~i~~-~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                           -.+.++.++. ..++.+  .|+||| +++++.++.++|+|.+.+|+.++.++
T Consensus       216 -----l~~~v~~~~~~~~~~~i--eAsGgI-t~~ni~~ya~~GvD~IsvG~l~~sa~  264 (273)
T PRK05848        216 -----IKEVVAYRNANYPHVLL--EASGNI-TLENINAYAKSGVDAISSGSLIHQAT  264 (273)
T ss_pred             -----HHHHHHHhhccCCCeEE--EEECCC-CHHHHHHHHHcCCCEEEeChhhcCCC
Confidence                 0112222221 123334  789999 79999999999999999999888654

>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=98.29  E-value=7.1e-06  Score=76.06  Aligned_cols=95  Identities=16%  Similarity=0.180  Sum_probs=68.8

Q ss_pred             hhHHHHHHHhc-CCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779          126 PADEENHINKH-NFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK  204 (310)
Q Consensus       126 ~~~~~~~~~~~-~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  204 (310)
                      ..+.++.+++. ++...+.++++|.+|+..+.+.|+|+|.+...                          +++.+     
T Consensus       182 i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~GaD~I~LDn~--------------------------~~e~l-----  230 (288)
T PRK07428        182 IGEAITRIRQRIPYPLTIEVETETLEQVQEALEYGADIIMLDNM--------------------------PVDLM-----  230 (288)
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHcCCCEEEECCC--------------------------CHHHH-----
Confidence            44555566653 33678999999999999999999999998521                          11111     


Q ss_pred             cCCCcHHHHHHHHh-cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          205 NIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       205 ~~~~~~~l~~~i~~-~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                           .+.++.+++ ..++|+  .|+||| +++++.++.++|+|++.+|+.++.++
T Consensus       231 -----~~av~~~~~~~~~i~l--eAsGGI-t~~ni~~ya~tGvD~Isvgsl~~sa~  278 (288)
T PRK07428        231 -----QQAVQLIRQQNPRVKI--EASGNI-TLETIRAVAETGVDYISSSAPITRSP  278 (288)
T ss_pred             -----HHHHHHHHhcCCCeEE--EEECCC-CHHHHHHHHHcCCCEEEEchhhhCCC
Confidence                 122233332 245677  678999 69999999999999999999998765

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=98.28  E-value=6.3e-06  Score=78.53  Aligned_cols=96  Identities=23%  Similarity=0.287  Sum_probs=70.2

Q ss_pred             HHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCC
Q 037779          130 ENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAA  208 (310)
Q Consensus       130 ~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~  208 (310)
                      ++.+++. .++++++. +.++++++++.+.|+|.|.+.+..+.                  .+   +         ....
T Consensus       213 l~~lr~~-~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhGGr------------------~l---d---------~~~~  261 (351)
T cd04737         213 IEFIAKI-SGLPVIVKGIQSPEDADVAINAGADGIWVSNHGGR------------------QL---D---------GGPA  261 (351)
T ss_pred             HHHHHHH-hCCcEEEecCCCHHHHHHHHHcCCCEEEEeCCCCc------------------cC---C---------CCch
Confidence            3445442 35677775 78999999999999999988654321                  00   0         0112


Q ss_pred             cHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          209 PYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       209 ~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      +++.+..+.+..  ++||  |++|||.+..|+.+++.+||++|++|++++.+
T Consensus       262 ~~~~l~~i~~a~~~~i~v--i~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~  311 (351)
T cd04737         262 SFDSLPEIAEAVNHRVPI--IFDSGVRRGEHVFKALASGADAVAVGRPVLYG  311 (351)
T ss_pred             HHHHHHHHHHHhCCCCeE--EEECCCCCHHHHHHHHHcCCCEEEECHHHHHH
Confidence            355666666543  6899  67999999999999999999999999999874

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2

Probab=98.28  E-value=1.5e-06  Score=82.47  Aligned_cols=51  Identities=22%  Similarity=0.325  Sum_probs=40.2

Q ss_pred             HHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc-CCCHH
Q 037779          210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK-SGDPV  262 (310)
Q Consensus       210 ~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~-~~dp~  262 (310)
                      .+++..+.+..  ++|+  |+.|||.|++|+.+++.+||+.|.+||+++. .++..
T Consensus       275 l~~v~~~~~~~~~~ipi--ig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~~Gp~~~  328 (335)
T TIGR01036       275 TEIIRRLYAELQGRLPI--IGVGGISSAQDALEKIRAGASLLQIYSGFIYWGPPLV  328 (335)
T ss_pred             HHHHHHHHHHhCCCCCE--EEECCCCCHHHHHHHHHcCCcHHHhhHHHHHhCchHH
Confidence            34555555433  6899  6789999999999999999999999999977 35543

The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.

>PRK06801 hypothetical protein; Provisional

Probab=98.28  E-value=0.00019  Score=66.67  Aligned_cols=175  Identities=15%  Similarity=0.138  Sum_probs=108.2

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EV  123 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~  123 (310)
                      ...+++++.++..|.++.  +...+ +.|.  ..-...++.+.+...+||.++ |.-..++.++.+.+.|.+.|-.. +.
T Consensus        33 avi~AAe~~~~PvIl~~~--~~~~~-~~~~--~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~D~S~  107 (286)
T PRK06801         33 ALFAAAKQERSPFIINIA--EVHFK-YISL--ESLVEAVKFEAARHDIPVVLNLDHGLHFEAVVRALRLGFSSVMFDGST  107 (286)
T ss_pred             HHHHHHHHHCCCEEEEeC--cchhh-cCCH--HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCcEEEEcCCC
Confidence            347777888888775552  11111 1111  001334566677789999887 33334577788888999998732 22


Q ss_pred             CChhH-------HHHHHHhcCCCCcEE-------------------ee-cCCHHHHHHHH-HhCCCEEEEe-cCCCCCch
Q 037779          124 LTPAD-------EENHINKHNFRVPFV-------------------CG-CRNLGESLRRI-REGAAMIRTK-GEAGTGNI  174 (310)
Q Consensus       124 ~~~~~-------~~~~~~~~~~~l~v~-------------------~~-v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~  174 (310)
                      ++.++       +.+.+++.+  +.+-                   .+ -.+++++++.. +.|+|++.+. |..++.  
T Consensus       108 l~~eeNi~~t~~v~~~a~~~g--v~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~--  183 (286)
T PRK06801        108 LEYEENVRQTREVVKMCHAVG--VSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGK--  183 (286)
T ss_pred             CCHHHHHHHHHHHHHHHHHcC--CeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEeccCCCCCC--
Confidence            33332       223333332  2220                   01 22457787777 6788988873 322211  


Q ss_pred             HHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccc
Q 037779          175 VEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG  254 (310)
Q Consensus       175 ~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsa  254 (310)
                                      .+.           ....+++.++.+.+..++|+|+.-++|| +.+++.++.++|++.|-++|.
T Consensus       184 ----------------y~~-----------~~~l~~e~l~~i~~~~~~PLVlHGGSgi-~~e~~~~~i~~Gi~KINv~T~  235 (286)
T PRK06801        184 ----------------YKG-----------EPKLDFARLAAIHQQTGLPLVLHGGSGI-SDADFRRAIELGIHKINFYTG  235 (286)
T ss_pred             ----------------CCC-----------CCCCCHHHHHHHHHhcCCCEEEECCCCC-CHHHHHHHHHcCCcEEEehhH
Confidence                            000           0123688889998877899987744459 589999999999999999999


Q ss_pred             ccc
Q 037779          255 VFK  257 (310)
Q Consensus       255 i~~  257 (310)
                      +..
T Consensus       236 ~~~  238 (286)
T PRK06801        236 MSQ  238 (286)
T ss_pred             HHH
Confidence            987

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=98.26  E-value=9.3e-06  Score=77.59  Aligned_cols=99  Identities=25%  Similarity=0.400  Sum_probs=72.3

Q ss_pred             ChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779          125 TPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA  203 (310)
Q Consensus       125 ~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  203 (310)
                      +..+ ++.+++. -++++++ ++-+.++++++.+.|+|.|.+.+..+..                  +..          
T Consensus       212 tW~d-i~wlr~~-~~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGGrq------------------ld~----------  261 (367)
T PLN02493        212 SWKD-VQWLQTI-TKLPILVKGVLTGEDARIAIQAGAAGIIVSNHGARQ------------------LDY----------  261 (367)
T ss_pred             CHHH-HHHHHhc-cCCCEEeecCCCHHHHHHHHHcCCCEEEECCCCCCC------------------CCC----------
Confidence            4444 4556553 2467666 5889999999999999999887654321                  110          


Q ss_pred             ccCCCcHHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          204 KNIAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       204 ~~~~~~~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                        ...+.+.+..+.+.  .++||  |++|||.+..|+.+++.+||++|.+|+.++.
T Consensus       262 --~~~t~~~L~ei~~av~~~~~v--i~dGGIr~G~Dv~KALALGA~aV~iGr~~l~  313 (367)
T PLN02493        262 --VPATISALEEVVKATQGRIPV--FLDGGVRRGTDVFKALALGASGIFIGRPVVF  313 (367)
T ss_pred             --chhHHHHHHHHHHHhCCCCeE--EEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence              12245566666553  35898  6799999999999999999999999999885

>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase

Probab=98.25  E-value=3.9e-05  Score=67.72  Aligned_cols=43  Identities=21%  Similarity=0.442  Sum_probs=38.8

Q ss_pred             CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEc
Q 037779          208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG  252 (310)
Q Consensus       208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VG  252 (310)
                      .+.++++.+++..++|+  ++.|||+++++++++.+.|||+|++|
T Consensus       163 v~~e~i~~Vk~~~~~Pv--~vGGGIrs~e~a~~l~~~GAD~VVVG  205 (205)
T TIGR01769       163 VNPETISLVKKASGIPL--IVGGGIRSPEIAYEIVLAGADAIVTG  205 (205)
T ss_pred             CCHHHHHHHHHhhCCCE--EEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence            46788899988778999  67999999999999999999999997

This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.

>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related

Probab=98.17  E-value=1.3e-05  Score=76.69  Aligned_cols=100  Identities=22%  Similarity=0.352  Sum_probs=67.3

Q ss_pred             ChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779          125 TPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA  203 (310)
Q Consensus       125 ~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  203 (310)
                      +.++ ++.+.++ .++++++ ++-+.+++.++.+.|++.|-+.|..++..                  ..          
T Consensus       213 ~w~~-i~~~~~~-~~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr~~------------------d~----------  262 (356)
T PF01070_consen  213 TWDD-IEWIRKQ-WKLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGRQL------------------DW----------  262 (356)
T ss_dssp             SHHH-HHHHHHH-CSSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGTSS------------------TT----------
T ss_pred             CHHH-HHHHhcc-cCCceEEEecccHHHHHHHHhcCCCEEEecCCCcccC------------------cc----------
Confidence            3434 3444432 3566666 68899999999999999999886644321                  00          


Q ss_pred             ccCCCcHHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          204 KNIAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       204 ~~~~~~~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                        -.++.+.+..+.+.  .++||  |++|||.+..|+.+++.+||++|.+|+.++.+
T Consensus       263 --~~~~~~~L~~i~~~~~~~~~i--~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~  315 (356)
T PF01070_consen  263 --GPPTIDALPEIRAAVGDDIPI--IADGGIRRGLDVAKALALGADAVGIGRPFLYA  315 (356)
T ss_dssp             --S-BHHHHHHHHHHHHTTSSEE--EEESS--SHHHHHHHHHTT-SEEEESHHHHHH
T ss_pred             --ccccccccHHHHhhhcCCeeE--EEeCCCCCHHHHHHHHHcCCCeEEEccHHHHH
Confidence              12245555666553  36899  67999999999999999999999999998874

These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=98.16  E-value=1.8e-05  Score=76.05  Aligned_cols=96  Identities=21%  Similarity=0.340  Sum_probs=69.2

Q ss_pred             HHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCC
Q 037779          130 ENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAA  208 (310)
Q Consensus       130 ~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~  208 (310)
                      ++.++++ .++++++ ++-+.++++++.+.|+|.|.+.+..++.                  +..            ...
T Consensus       237 i~~lr~~-~~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr~------------------~d~------------~~~  285 (381)
T PRK11197        237 LEWIRDF-WDGPMVIKGILDPEDARDAVRFGADGIVVSNHGGRQ------------------LDG------------VLS  285 (381)
T ss_pred             HHHHHHh-CCCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCCC------------------CCC------------ccc
Confidence            4445443 2345444 7999999999999999999987653321                  100            112


Q ss_pred             cHHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          209 PYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       209 ~~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      +.+.+..+.+.  .++||  |++|||.+..|+.+++.+||++|++|+.++.+
T Consensus       286 t~~~L~~i~~a~~~~~~v--i~dGGIr~g~Di~KALaLGA~~V~iGr~~l~~  335 (381)
T PRK11197        286 SARALPAIADAVKGDITI--LADSGIRNGLDVVRMIALGADTVLLGRAFVYA  335 (381)
T ss_pred             HHHHHHHHHHHhcCCCeE--EeeCCcCcHHHHHHHHHcCcCceeEhHHHHHH
Confidence            34555555443  36898  67999999999999999999999999999874

>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]

Probab=98.16  E-value=0.00016  Score=64.33  Aligned_cols=57  Identities=25%  Similarity=0.459  Sum_probs=44.5

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV  272 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~  272 (310)
                      +.+.++.+++.  .|+  |..|||.|+++++++.++|||.+++|+.+.+++   +++.+..+++
T Consensus       181 ~~e~v~~v~~~--~~L--ivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~---~~~~~~v~~~  237 (240)
T COG1646         181 PVEMVSRVLSD--TPL--IVGGGIRSPEQAREMAEAGADTIVTGTIIEEDP---DKALETVEAI  237 (240)
T ss_pred             CHHHHHHhhcc--ceE--EEcCCcCCHHHHHHHHHcCCCEEEECceeecCH---HHHHHHHHHh
Confidence            56666776653  377  779999999999999999999999999999955   3444444443

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=98.16  E-value=1.9e-05  Score=75.92  Aligned_cols=96  Identities=21%  Similarity=0.296  Sum_probs=70.2

Q ss_pred             HHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCC
Q 037779          129 EENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIA  207 (310)
Q Consensus       129 ~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~  207 (310)
                      .++.+++. .++++++ ++.+.++++++.+.|+|.|.+.+..+..                  +..            ..
T Consensus       244 ~i~~lr~~-~~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGGr~------------------~d~------------~~  292 (383)
T cd03332         244 DLAFLREW-TDLPIVLKGILHPDDARRAVEAGVDGVVVSNHGGRQ------------------VDG------------SI  292 (383)
T ss_pred             HHHHHHHh-cCCCEEEecCCCHHHHHHHHHCCCCEEEEcCCCCcC------------------CCC------------Cc
Confidence            34445442 2466666 5999999999999999999887543311                  100            12


Q ss_pred             CcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          208 APYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       208 ~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                      ++.+.+..+.+..  ++||  +++|||.+..|+.+++.+||++|.+|+.++.
T Consensus       293 ~t~~~L~ei~~~~~~~~~v--i~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~  342 (383)
T cd03332         293 AALDALPEIVEAVGDRLTV--LFDSGVRTGADIMKALALGAKAVLIGRPYAY  342 (383)
T ss_pred             CHHHHHHHHHHHhcCCCeE--EEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence            2455666665532  5898  6799999999999999999999999999985

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain

Probab=98.11  E-value=9.3e-05  Score=70.38  Aligned_cols=54  Identities=28%  Similarity=0.327  Sum_probs=45.3

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRA  265 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~  265 (310)
                      .+++.+.+++..++||  ++.|||. ++++.++++.| +|.|.+|++++..+|....+
T Consensus       273 ~~~~~~~ik~~~~ipv--i~~G~i~-~~~a~~~l~~g~~D~V~~gR~~ladP~~~~k~  327 (338)
T cd02933         273 PPDFLDFLRKAFKGPL--IAAGGYD-AESAEAALADGKADLVAFGRPFIANPDLVERL  327 (338)
T ss_pred             chHHHHHHHHHcCCCE--EEECCCC-HHHHHHHHHcCCCCEEEeCHhhhhCcCHHHHH
Confidence            4567777888778999  6689996 99999999975 99999999999988766544

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.

>cd00945 Aldolase_Class_I Class I aldolases

Probab=98.10  E-value=0.00024  Score=61.33  Aligned_cols=153  Identities=24%  Similarity=0.269  Sum_probs=92.5

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc---CcceEeeccccc--------hHHHHHHHHcC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV---TIPVMAKARIGH--------FVEAQILEAIG  114 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~---~lPv~~kd~i~~--------~~~~~~~~~aG  114 (310)
                      ++++.+.++|++++...                  .+.++.+++.+   ++|++++..-..        .+.++.+.++|
T Consensus        17 ~~~~~~~~~gv~gi~~~------------------g~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~G   78 (201)
T cd00945          17 KLCDEAIEYGFAAVCVN------------------PGYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLG   78 (201)
T ss_pred             HHHHHHHHhCCcEEEEC------------------HHHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcC
Confidence            67899999999998432                  24555555543   488887643322        24567788899


Q ss_pred             CCeeeec-CC---CC--hhHHHHHHHh---cC-CCCcEEeecC-----CHHHHHH----HHHhCCCEEEEecCCCCCchH
Q 037779          115 VDYVDES-EV---LT--PADEENHINK---HN-FRVPFVCGCR-----NLGESLR----RIREGAAMIRTKGEAGTGNIV  175 (310)
Q Consensus       115 ad~v~~~-~~---~~--~~~~~~~~~~---~~-~~l~v~~~v~-----t~~ea~~----a~~~Gad~I~v~g~~~~~~~~  175 (310)
                      ||.+... ..   .+  ...+.+.+++   .- .++++++...     +.++..+    +.+.|++.|+......++   
T Consensus        79 ad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~~---  155 (201)
T cd00945          79 ADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGGG---  155 (201)
T ss_pred             CCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCCC---
Confidence            9998742 11   11  2333343332   21 3566665432     4554443    346788888875211100   


Q ss_pred             HHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEc
Q 037779          176 EAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVG  252 (310)
Q Consensus       176 ~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VG  252 (310)
                                                     ..+.+..+.+.+..  ++|+  ++.||+.+++++..++..|++|+++|
T Consensus       156 -------------------------------~~~~~~~~~i~~~~~~~~~v--~~~gg~~~~~~~~~~~~~Ga~g~~~g  201 (201)
T cd00945         156 -------------------------------GATVEDVKLMKEAVGGRVGV--KAAGGIKTLEDALAAIEAGADGIGTS  201 (201)
T ss_pred             -------------------------------CCCHHHHHHHHHhcccCCcE--EEECCCCCHHHHHHHHHhccceeecC
Confidence                                           01233344444432  5688  55799988999999999999999876

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway

Probab=98.10  E-value=3.8e-06  Score=78.24  Aligned_cols=59  Identities=20%  Similarity=0.314  Sum_probs=41.3

Q ss_pred             HHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc-CCCHHHHHHHHHHHHH
Q 037779          210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK-SGDPVRRARAIVQAVT  273 (310)
Q Consensus       210 ~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~-~~dp~~~~~~~~~~~~  273 (310)
                      ...+..+.+..  ++||  |+.|||.|++|+.+++.+||+.|.++|+++. .++   .++++.+.++
T Consensus       231 L~~V~~~~~~~~~~i~I--ig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~---~~~~i~~~L~  292 (295)
T PF01180_consen  231 LRWVRELRKALGQDIPI--IGVGGIHSGEDAIEFLMAGASAVQVCSALIYRGPG---VIRRINRELE  292 (295)
T ss_dssp             HHHHHHHHHHTTTSSEE--EEESS--SHHHHHHHHHHTESEEEESHHHHHHGTT---HHHHHHHHHH
T ss_pred             HHHHHHHHhccccceEE--EEeCCcCCHHHHHHHHHhCCCHheechhhhhcCcH---HHHHHHHHHH
Confidence            34445555544  3888  6789999999999999999999999999954 443   3444544444

DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=98.07  E-value=1.4e-05  Score=71.93  Aligned_cols=47  Identities=23%  Similarity=0.367  Sum_probs=41.9

Q ss_pred             CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc
Q 037779          208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF  256 (310)
Q Consensus       208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~  256 (310)
                      ...++++.+.+...+||  +++|||.|.+|+.+++++|+++|++||+.+
T Consensus        60 ~n~~~i~~i~~~~~~pv--~~gGGIrs~edv~~l~~~G~~~vivGtaa~  106 (228)
T PRK04128         60 KNLDVVKNIIRETGLKV--QVGGGLRTYESIKDAYEIGVENVIIGTKAF  106 (228)
T ss_pred             chHHHHHHHHhhCCCCE--EEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence            46778888887778899  679999999999999999999999999876

>PRK09250 fructose-bisphosphate aldolase; Provisional

Probab=98.07  E-value=0.00026  Score=66.88  Aligned_cols=203  Identities=17%  Similarity=0.189  Sum_probs=110.6

Q ss_pred             ccccceeeecCCccc------cCCCHH-HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHh-h-cCcceE
Q 037779           26 VKVGLAQMLRGGVIM------DVVTPE-QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS-S-VTIPVM   96 (310)
Q Consensus        26 ~~~~~~~~l~~g~i~------~~~~~~-~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~-~-~~lPv~   96 (310)
                      +.+|+.+-+..|.+.      ...+++ ..+.+.++|++++. +        .         .-.++.... . .++|++
T Consensus        68 vilpvDHG~ehGp~~~f~~n~gl~dp~~~i~~a~~~g~dAv~-~--------~---------~G~l~~~~~~~~~~iplI  129 (348)
T PRK09250         68 SILPVDQGFEHSAGASFAPNPLYFDPENIVKLAIEAGCNAVA-S--------T---------LGVLEAVARKYAHKIPFI  129 (348)
T ss_pred             EEEEcccccccCCccccccCCcccCHHHHHHHHHhcCCCEEE-e--------C---------HHHHHhccccccCCCCEE
Confidence            345556656666665      455664 78999999999983 2        1         113333221 1 256766


Q ss_pred             eecc----c-c---c----hHHHHHHHHcCCCeeeecCCC-C------hhHHHHHHHh-cCCCCcEEeec-------CC-
Q 037779           97 AKAR----I-G---H----FVEAQILEAIGVDYVDESEVL-T------PADEENHINK-HNFRVPFVCGC-------RN-  148 (310)
Q Consensus        97 ~kd~----i-~---~----~~~~~~~~~aGad~v~~~~~~-~------~~~~~~~~~~-~~~~l~v~~~v-------~t-  148 (310)
                      ++.-    + .   +    +-.++.+...|||+|-.+-.. +      ..++.+...+ +..|+++++-+       .+ 
T Consensus       130 lkln~~t~l~~~~~~~~~l~~sVedAlrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~  209 (348)
T PRK09250        130 LKLNHNELLSYPNTYDQALTASVEDALRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKD  209 (348)
T ss_pred             EEeCCCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCc
Confidence            6511    1 0   0    123567888999998632111 1      1122222233 55678777622       11 


Q ss_pred             ------HH----HHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhc-ceecccccCchhHHhhhccCCCcHHHHHHHH
Q 037779          149 ------LG----ESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMG-DIRVLRNMDDDEVFTFAKNIAAPYDLVMQTK  217 (310)
Q Consensus       149 ------~~----ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~  217 (310)
                            ++    -+..+.++|||+|++.-+..-..+    +.+ .++. +.+.....          .+..+.+..+.+.
T Consensus       210 ~d~~~~~d~Ia~AaRiaaELGADIVKv~yp~~~~~f----~~v-~~~~~~~~~~~~~----------~~~~~~~~~~~~V  274 (348)
T PRK09250        210 GDYHTAADLTGQANHLAATIGADIIKQKLPTNNGGY----KAI-NFGKTDDRVYSKL----------TSDHPIDLVRYQV  274 (348)
T ss_pred             ccccccHHHHHHHHHHHHHHcCCEEEecCCCChhhH----HHh-hcccccccccccc----------cccchHHHHHHHH
Confidence                  11    134566899999998622110000    000 0000 01111111          1234566677776


Q ss_pred             hcC---CCCEEEEccCCCC-CH----HHHHHH---HHcCCCEEEEccccccCCCHHH
Q 037779          218 QLG---RLPVVHFAAGGVA-TP----ADAAMM---MQLGCDGVFVGSGVFKSGDPVR  263 (310)
Q Consensus       218 ~~~---~iPVv~ia~GGI~-t~----~di~~~---~~~GadgV~VGsai~~~~dp~~  263 (310)
                      +.+   ++||+  .+||=. +.    +.++.+   ++.|+.|+++|+-+++.++++.
T Consensus       275 ~ac~ag~vpVv--iAGG~k~~~~e~L~~v~~a~~~i~aGa~Gv~iGRNIfQ~~~~ea  329 (348)
T PRK09250        275 ANCYMGRRGLI--NSGGASKGEDDLLDAVRTAVINKRAGGMGLIIGRKAFQRPMAEG  329 (348)
T ss_pred             HhhccCCceEE--EeCCCCCCHHHHHHHHHHHHHhhhcCCcchhhchhhhcCCcHHH
Confidence            655   78995  366655 22    335677   8889999999999999998763

>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed

Probab=98.06  E-value=0.00011  Score=66.03  Aligned_cols=45  Identities=27%  Similarity=0.476  Sum_probs=40.1

Q ss_pred             ccCCCCCHH-----------HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779          228 AAGGVATPA-----------DAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       228 a~GGI~t~~-----------di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                      ..+||. ++           ...++++.|+++++||++|++++||.++++++.+.+.
T Consensus       173 v~pGI~-~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a~~i~~~i~  228 (230)
T PRK00230        173 VTPGIR-PAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAADPAAAYEAILAEIA  228 (230)
T ss_pred             EcCCcC-CCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHHHHhh
Confidence            469996 55           6888899999999999999999999999999998775

>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain

Probab=98.06  E-value=0.00015  Score=68.85  Aligned_cols=53  Identities=21%  Similarity=0.317  Sum_probs=45.3

Q ss_pred             HHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHH
Q 037779          210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRR  264 (310)
Q Consensus       210 ~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~  264 (310)
                      .+..+.+++..++||  ++.|||.+++++.++++.| +|.|.+|++++..++....
T Consensus       279 ~~~~~~ir~~~~iPV--i~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~dP~~~~k  332 (336)
T cd02932         279 VPFAERIRQEAGIPV--IAVGLITDPEQAEAILESGRADLVALGRELLRNPYWPLH  332 (336)
T ss_pred             HHHHHHHHhhCCCCE--EEeCCCCCHHHHHHHHHcCCCCeehhhHHHHhCccHHHH
Confidence            466677887778999  5689999999999999987 9999999999998776543

YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.

>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional

Probab=98.05  E-value=0.0023  Score=56.87  Aligned_cols=185  Identities=21%  Similarity=0.238  Sum_probs=108.7

Q ss_pred             CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC--cceEeecccc-chHHH-HHHHHcCCCe
Q 037779           42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT--IPVMAKARIG-HFVEA-QILEAIGVDY  117 (310)
Q Consensus        42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~--lPv~~kd~i~-~~~~~-~~~~~aGad~  117 (310)
                      ..+++.++.+.++|++.+-.+ ..       .++-+.-+++..+++.+...  +.. +..+.+ ..+.+ +.+...+.|.
T Consensus        10 i~~~eda~~~~~~Gad~iGfI-~~-------~~S~R~V~~~~a~~i~~~~~~~i~~-VgVf~~~~~~~i~~~~~~~~~d~   80 (210)
T PRK01222         10 ITTPEDAEAAAELGADAIGFV-FY-------PKSPRYVSPEQAAELAAALPPFVKV-VGVFVNASDEEIDEIVETVPLDL   80 (210)
T ss_pred             CCcHHHHHHHHHcCCCEEEEc-cC-------CCCCCcCCHHHHHHHHHhCCCCCCE-EEEEeCCCHHHHHHHHHhcCCCE
Confidence            466899999999999998332 11       22333445788888887654  211 222222 22343 5667799999


Q ss_pred             eeecCCCChhHHHHHHHhc-CCCCcEEeecCCHHHHHHHHH--hCCCEEEEecC--CCCCchHHHHHHHHHhhcceeccc
Q 037779          118 VDESEVLTPADEENHINKH-NFRVPFVCGCRNLGESLRRIR--EGAAMIRTKGE--AGTGNIVEAVRHVRSVMGDIRVLR  192 (310)
Q Consensus       118 v~~~~~~~~~~~~~~~~~~-~~~l~v~~~v~t~~ea~~a~~--~Gad~I~v~g~--~~~~~~~~~~~~~~~~~~~~~~l~  192 (310)
                      |..+...+ .+..+.++.. +..+.-.+.+.+..+...+.+  ..+|++-+...  .++++                   
T Consensus        81 vQLHg~e~-~~~~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGt-------------------  140 (210)
T PRK01222         81 LQLHGDET-PEFCRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGT-------------------  140 (210)
T ss_pred             EEECCCCC-HHHHHHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCC-------------------
Confidence            97654434 4444555542 223333345554444433322  35677665421  11111                   


Q ss_pred             ccCchhHHhhhccCCCcHHHH-HHHHhcCCCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccCC--CHHHHHHHH
Q 037779          193 NMDDDEVFTFAKNIAAPYDLV-MQTKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSG--DPVRRARAI  268 (310)
Q Consensus       193 ~~~~d~~~~~~~~~~~~~~l~-~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~~--dp~~~~~~~  268 (310)
                                  +..-+|..+ ..+    +.|+  +.+||| +|+|+.++++. ++.||=+.|.+=..+  --...+++|
T Consensus       141 ------------G~~~dw~~l~~~~----~~p~--~LAGGi-~peNv~~ai~~~~p~gvDvsSgvE~~~G~KD~~ki~~f  201 (210)
T PRK01222        141 ------------GKTFDWSLLPAGL----AKPW--ILAGGL-NPDNVAEAIRQVRPYGVDVSSGVESAPGIKDPEKIRAF  201 (210)
T ss_pred             ------------CCccchHHhhhcc----CCCE--EEECCC-CHHHHHHHHHhcCCCEEEecCceECCCCCcCHHHHHHH
Confidence                        122245555 222    4588  458999 69999999974 999999999998642  124567777


Q ss_pred             HHHHHc
Q 037779          269 VQAVTN  274 (310)
Q Consensus       269 ~~~~~~  274 (310)
                      .+.+++
T Consensus       202 ~~~~~~  207 (210)
T PRK01222        202 IEAVKS  207 (210)
T ss_pred             HHHHHh
Confidence            777654

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=98.05  E-value=2.6e-05  Score=74.15  Aligned_cols=129  Identities=19%  Similarity=0.285  Sum_probs=86.9

Q ss_pred             HHHHHHHcCCCeeeec-CC---CChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHH
Q 037779          106 EAQILEAIGVDYVDES-EV---LTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRH  180 (310)
Q Consensus       106 ~~~~~~~aGad~v~~~-~~---~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~  180 (310)
                      ....+..+|+|.|+.. +.   ....+.++++++..+.+.++.+ +-|.+.++..+.+|+|.+.+. . ++|.+.     
T Consensus       255 rl~ll~~aGvdvviLDSSqGnS~~qiemik~iK~~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVG-M-GsGSiC-----  327 (503)
T KOG2550|consen  255 RLDLLVQAGVDVVILDSSQGNSIYQLEMIKYIKETYPDLQIIAGNVVTKEQAANLIAAGADGLRVG-M-GSGSIC-----  327 (503)
T ss_pred             HHHHhhhcCCcEEEEecCCCcchhHHHHHHHHHhhCCCceeeccceeeHHHHHHHHHccCceeEec-c-ccCcee-----
Confidence            4466777999998732 11   2234677888888899888875 778889999999999999885 1 122210     


Q ss_pred             HHHhhcceecccccCchhHHhhhc-cCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          181 VRSVMGDIRVLRNMDDDEVFTFAK-NIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       181 ~~~~~~~~~~l~~~~~d~~~~~~~-~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                               .....     ....+ +..+-++......+ ..+||  ||.|||.++.++.+++.+||+.||+|+-+...
T Consensus       328 ---------iTqev-----ma~GrpQ~TAVy~va~~A~q-~gvpv--iADGGiq~~Ghi~KAl~lGAstVMmG~lLAgt  389 (503)
T KOG2550|consen  328 ---------ITQKV-----MACGRPQGTAVYKVAEFANQ-FGVPC--IADGGIQNVGHVVKALGLGASTVMMGGLLAGT  389 (503)
T ss_pred             ---------eecee-----eeccCCcccchhhHHHHHHh-cCCce--eecCCcCccchhHhhhhcCchhheecceeeee
Confidence                     00000     00001 11122333333332 46899  78999999999999999999999999988774

>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=98.02  E-value=3.4e-05  Score=66.16  Aligned_cols=95  Identities=20%  Similarity=0.236  Sum_probs=67.0

Q ss_pred             hhHHHHHHHhcCCCC-cEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779          126 PADEENHINKHNFRV-PFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK  204 (310)
Q Consensus       126 ~~~~~~~~~~~~~~l-~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  204 (310)
                      ..+.++.+++..+.. .+.+++.|.+|++.+++.|+|+|..-..                          +++.      
T Consensus        66 i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g~d~I~lD~~--------------------------~~~~------  113 (169)
T PF01729_consen   66 IEEAVKAARQAAPEKKKIEVEVENLEEAEEALEAGADIIMLDNM--------------------------SPED------  113 (169)
T ss_dssp             HHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT-SEEEEES---------------------------CHHH------
T ss_pred             HHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhCCCEEEecCc--------------------------CHHH------
Confidence            566677777754554 4999999999999999999999998521                          1111      


Q ss_pred             cCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          205 NIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       205 ~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                          -.+.++.+++. .++.+  .++||| +++++.++.+.|+|.+.+|+..+.++
T Consensus       114 ----~~~~v~~l~~~~~~v~i--e~SGGI-~~~ni~~ya~~gvD~isvg~~~~~a~  162 (169)
T PF01729_consen  114 ----LKEAVEELRELNPRVKI--EASGGI-TLENIAEYAKTGVDVISVGSLTHSAP  162 (169)
T ss_dssp             ----HHHHHHHHHHHTTTSEE--EEESSS-STTTHHHHHHTT-SEEEECHHHHSBE
T ss_pred             ----HHHHHHHHhhcCCcEEE--EEECCC-CHHHHHHHHhcCCCEEEcChhhcCCc
Confidence                12233333332 23333  689999 69999999999999999999888764

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....

>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional

Probab=98.02  E-value=9.3e-05  Score=66.05  Aligned_cols=144  Identities=13%  Similarity=0.149  Sum_probs=84.2

Q ss_pred             HHHHHHHhcCCCCcEEeecCCHH----HHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhc----ceecccccCc-hh
Q 037779          128 DEENHINKHNFRVPFVCGCRNLG----ESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMG----DIRVLRNMDD-DE  198 (310)
Q Consensus       128 ~~~~~~~~~~~~l~v~~~v~t~~----ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~-d~  198 (310)
                      ++++.+++..++..++++.+..+    ++..+.+.|+|++.+++.++...+.++++.+.+.+.    ++....+... ..
T Consensus        45 ~~i~~lk~~~~~~~IflDlKl~DIp~tv~~~~~~~Gad~~tv~~~~g~~~i~~a~~~a~~~~~~~~~~llgV~t~~~~~~  124 (218)
T PRK13305         45 GAVKALREQCPDKIIVADWKVADAGETLAQQAFGAGANWMTIICAAPLATVEKGHAVAQRCGGEIQIELFGNWTLDDARD  124 (218)
T ss_pred             HHHHHHHHhCCCCEEEEEeecccChHHHHHHHHHcCCCEEEEecCCCHHHHHHHHHHHHhcCCcccceEEEecCcchHHH
Confidence            34455555445667777755433    445566788888777754333344444443333221    2221112111 11


Q ss_pred             HHh---------hh-----ccCCCcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 037779          199 VFT---------FA-----KNIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV  262 (310)
Q Consensus       199 ~~~---------~~-----~~~~~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~  262 (310)
                      +.+         .+     .+...+..-+..+++..  +.++  ++.||| .++.....-+.++|-++||++|++++||.
T Consensus       125 l~~~g~~~~v~h~a~~a~~~G~v~s~~e~~~ir~~~~~~~~i--~VtpGI-r~~~~~~~dq~rvd~iVVGR~It~A~dP~  201 (218)
T PRK13305        125 WHRIGVRQAIYHRGRDAQASGQQWGEADLARMKALSDIGLEL--SITGGI-TPADLPLFKDIRVKAFIAGRALAGAANPA  201 (218)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCcE--EEeCCc-CccccccccccCCCEEEECCcccCCCCHH
Confidence            100         01     11111223345555543  3334  457999 58888888889999999999999999999


Q ss_pred             HHHHHHHHHHHc
Q 037779          263 RRARAIVQAVTN  274 (310)
Q Consensus       263 ~~~~~~~~~~~~  274 (310)
                      +.++++.+.+..
T Consensus       202 ~aa~~i~~~i~~  213 (218)
T PRK13305        202 QVAADFHAQIDA  213 (218)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998864

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=98.01  E-value=2.5e-05  Score=71.25  Aligned_cols=49  Identities=22%  Similarity=0.398  Sum_probs=43.2

Q ss_pred             CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      ..+++++.+.+..++||  ++.|||.+.+++.+++.+|++.|++||+++..
T Consensus        61 ~n~~~i~~i~~~~~~pv--~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~~  109 (254)
T TIGR00735        61 TMIDVVERTAETVFIPL--TVGGGIKSIEDVDKLLRAGADKVSINTAAVKN  109 (254)
T ss_pred             hhHHHHHHHHHhcCCCE--EEECCCCCHHHHHHHHHcCCCEEEEChhHhhC
Confidence            35778888888778999  56899999999999999999999999988874

>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain

Probab=97.98  E-value=0.0002  Score=69.26  Aligned_cols=54  Identities=22%  Similarity=0.329  Sum_probs=45.6

Q ss_pred             HHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHH
Q 037779          210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRA  265 (310)
Q Consensus       210 ~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~  265 (310)
                      +.+.+.+++..++||  ++.|||.+++++.++++.| +|.|++|++++..+|....+
T Consensus       294 ~~~~~~ik~~~~~pv--i~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~  348 (382)
T cd02931         294 LPYCKALKEVVDVPV--IMAGRMEDPELASEAINEGIADMISLGRPLLADPDVVNKI  348 (382)
T ss_pred             HHHHHHHHHHCCCCE--EEeCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHHHH
Confidence            456677888778999  6789999999999999875 99999999999988765444

Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.

>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]

Probab=97.94  E-value=0.0029  Score=55.95  Aligned_cols=186  Identities=25%  Similarity=0.291  Sum_probs=112.7

Q ss_pred             CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC-cceEeecccc-chHHH-HHHHHcCCCee
Q 037779           42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT-IPVMAKARIG-HFVEA-QILEAIGVDYV  118 (310)
Q Consensus        42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~-lPv~~kd~i~-~~~~~-~~~~~aGad~v  118 (310)
                      ...++.++.+.++||+.+-.+ ..+.       |-|.-+++..+++.+.+. ++ .+..+.+ ..+++ +++...+.|.|
T Consensus         9 lt~~eda~~a~~~gad~iG~I-f~~~-------SpR~Vs~~~a~~i~~~v~~~~-~VgVf~n~~~~~i~~i~~~~~ld~V   79 (208)
T COG0135           9 LTRLEDAKAAAKAGADYIGFI-FVPK-------SPRYVSPEQAREIASAVPKVK-VVGVFVNESIEEILEIAEELGLDAV   79 (208)
T ss_pred             CCCHHHHHHHHHcCCCEEEEE-EcCC-------CCCcCCHHHHHHHHHhCCCCC-EEEEECCCCHHHHHHHHHhcCCCEE
Confidence            456899999999999997333 1111       334455888888887765 33 2233333 22333 56677899998


Q ss_pred             eecCCCChhHHHHHHHhcC-CCCcEEeecCCHH--HHHHHHHhCCCEEEEecCC---CCCchHHHHHHHHHhhcceeccc
Q 037779          119 DESEVLTPADEENHINKHN-FRVPFVCGCRNLG--ESLRRIREGAAMIRTKGEA---GTGNIVEAVRHVRSVMGDIRVLR  192 (310)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~-~~l~v~~~v~t~~--ea~~a~~~Gad~I~v~g~~---~~~~~~~~~~~~~~~~~~~~~l~  192 (310)
                      -.|-.. +.+.++.++... ..+.-.+.+....  +.......-+|.+-+-...   .+|+                   
T Consensus        80 QlHG~e-~~~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGt-------------------  139 (208)
T COG0135          80 QLHGDE-DPEYIDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGT-------------------  139 (208)
T ss_pred             EECCCC-CHHHHHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCC-------------------
Confidence            755443 445556666532 2333333444332  2222333455666554321   1111                   


Q ss_pred             ccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCC-CEEEEccccccCC---CHHHHHHHH
Q 037779          193 NMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGC-DGVFVGSGVFKSG---DPVRRARAI  268 (310)
Q Consensus       193 ~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~Ga-dgV~VGsai~~~~---dp~~~~~~~  268 (310)
                                  +..-+|.++...  ....|+  +.+||| ||+|+.++++++. .||=+.|.+=.++   | ..++++|
T Consensus       140 ------------G~~fDW~~l~~~--~~~~~~--~LAGGL-~p~NV~~ai~~~~p~gvDvSSGVE~~pG~KD-~~kv~~f  201 (208)
T COG0135         140 ------------GQTFDWNLLPKL--RLSKPV--MLAGGL-NPDNVAEAIALGPPYGVDVSSGVESSPGIKD-PAKVKAF  201 (208)
T ss_pred             ------------CcEECHHHhccc--cccCCE--EEECCC-CHHHHHHHHHhcCCceEEeccccccCCCCCC-HHHHHHH
Confidence                        122367776665  134687  458999 6999999999987 9999999998873   4 3567777


Q ss_pred             HHHHHc
Q 037779          269 VQAVTN  274 (310)
Q Consensus       269 ~~~~~~  274 (310)
                      .+.++.
T Consensus       202 ~~~vk~  207 (208)
T COG0135         202 FEAVKR  207 (208)
T ss_pred             HHHHhc
Confidence            777653

>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain

Probab=97.91  E-value=0.00017  Score=68.96  Aligned_cols=54  Identities=24%  Similarity=0.244  Sum_probs=45.3

Q ss_pred             HHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHH
Q 037779          210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRA  265 (310)
Q Consensus       210 ~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~  265 (310)
                      .+..+.+++..++||  ++.|+|.+++++.++++.| +|.|++|++++..+|....+
T Consensus       265 ~~~~~~ik~~v~iPV--i~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~k~  319 (353)
T cd02930         265 AWATAKLKRAVDIPV--IASNRINTPEVAERLLADGDADMVSMARPFLADPDFVAKA  319 (353)
T ss_pred             HHHHHHHHHhCCCCE--EEcCCCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHHHH
Confidence            445677888778999  6789999999999999975 99999999999988765443

DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi

>TIGR01334 modD putative molybdenum utilization protein ModD

Probab=97.91  E-value=0.00042  Score=63.94  Aligned_cols=93  Identities=12%  Similarity=0.157  Sum_probs=66.3

Q ss_pred             ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779          125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK  204 (310)
Q Consensus       125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  204 (310)
                      +..+.++.+++..++..+.+++.|.+|++.+.++|+|+|...+.                          +++.      
T Consensus       174 ~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~GaDiI~lDn~--------------------------~~e~------  221 (277)
T TIGR01334       174 DWGGAIGRLKQTAPERKITVEADTIEQALTVLQASPDILQLDKF--------------------------TPQQ------  221 (277)
T ss_pred             cHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHcCcCEEEECCC--------------------------CHHH------
Confidence            34566666666556678999999999999999999999998621                          1111      


Q ss_pred             cCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc
Q 037779          205 NIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF  256 (310)
Q Consensus       205 ~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~  256 (310)
                          ..+.++.+++. .++.+  -++||| +++++.++.++|+|.+.+|+-.+
T Consensus       222 ----l~~~v~~l~~~~~~~~l--easGGI-~~~ni~~ya~~GvD~is~gal~~  267 (277)
T TIGR01334       222 ----LHHLHERLKFFDHIPTL--AAAGGI-NPENIADYIEAGIDLFITSAPYY  267 (277)
T ss_pred             ----HHHHHHHHhccCCCEEE--EEECCC-CHHHHHHHHhcCCCEEEeCccee
Confidence                12233333321 23333  689999 69999999999999999998643

The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2

Probab=97.89  E-value=0.0003  Score=66.86  Aligned_cols=55  Identities=16%  Similarity=0.297  Sum_probs=46.7

Q ss_pred             HHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHH
Q 037779          210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       210 ~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~  266 (310)
                      +++.+.+++..++||  ++.|+|.+++++.++++.| +|.|.+|+.++..++....++
T Consensus       281 ~~~~~~ik~~v~iPV--i~~G~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~~~k~~  336 (338)
T cd04733         281 LEFAEKIRKVTKTPL--MVTGGFRTRAAMEQALASGAVDGIGLARPLALEPDLPNKLL  336 (338)
T ss_pred             HHHHHHHHHHcCCCE--EEeCCCCCHHHHHHHHHcCCCCeeeeChHhhhCccHHHHHh
Confidence            467777888778999  5689999999999999975 999999999999887765543

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional

Probab=97.89  E-value=0.0034  Score=55.62  Aligned_cols=188  Identities=15%  Similarity=0.165  Sum_probs=108.2

Q ss_pred             CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcce-Eeecccc-chHHH-HHHHHcCCCee
Q 037779           42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPV-MAKARIG-HFVEA-QILEAIGVDYV  118 (310)
Q Consensus        42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv-~~kd~i~-~~~~~-~~~~~aGad~v  118 (310)
                      ..+++.|+.+.++|++++-.+ ..       .+|-+.-+++..+++.+.+.-.+ .+..+.+ ..+.+ +.+...|.|.|
T Consensus         8 it~~eda~~~~~~GaD~iGfI-f~-------~~SpR~V~~~~a~~i~~~~~~~~~~VgVf~~~~~~~i~~~~~~~~~d~v   79 (207)
T PRK13958          8 FTTIKDVTAASQLPIDAIGFI-HY-------EKSKRHQTITQIKKLASAVPNHIDKVCVVVNPDLTTIEHILSNTSINTI   79 (207)
T ss_pred             CCcHHHHHHHHHcCCCEEEEe-cC-------CCCcccCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhCCCCEE
Confidence            466899999999999998322 11       22334445888888887653111 1222232 22344 56667999999


Q ss_pred             eecCCCChhHHHHHHHhcCCCCcEEeecCC-HHHHHHH--HHhCCCEEEEecC--CCCCchHHHHHHHHHhhcceecccc
Q 037779          119 DESEVLTPADEENHINKHNFRVPFVCGCRN-LGESLRR--IREGAAMIRTKGE--AGTGNIVEAVRHVRSVMGDIRVLRN  193 (310)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t-~~ea~~a--~~~Gad~I~v~g~--~~~~~~~~~~~~~~~~~~~~~~l~~  193 (310)
                      ..+...+ .+..+.++...+.+.++-..+. ......+  ....+|++-+...  .++|+                    
T Consensus        80 QLHG~e~-~~~~~~l~~~~~~~~iika~~~~~~~~~~~~~~~~~~d~~LlDs~~~~~GGt--------------------  138 (207)
T PRK13958         80 QLHGTES-IDFIQEIKKKYSSIKIIKALPADENIIQNINKYKGFVDLFIIDTPSVSYGGT--------------------  138 (207)
T ss_pred             EECCCCC-HHHHHHHhhcCCCceEEEEecccHHHHHHHHHHHhhCCEEEEcCCCCCCCcC--------------------
Confidence            7554433 4555666653333444433221 1222111  1224676655421  11111                    


Q ss_pred             cCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHH--cCCCEEEEccccccCC-CHHHHHHHHHH
Q 037779          194 MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ--LGCDGVFVGSGVFKSG-DPVRRARAIVQ  270 (310)
Q Consensus       194 ~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~--~GadgV~VGsai~~~~-dp~~~~~~~~~  270 (310)
                                 +..-+|++++.+   .+.|+  +.+||| +|+|+.+++.  .+..||=+.|.+=... .-...+++|.+
T Consensus       139 -----------G~~~dw~~~~~~---~~~p~--iLAGGL-~peNV~~a~~~~~~p~gVDvsSGVE~~G~KD~~ki~~f~~  201 (207)
T PRK13958        139 -----------GQTYDWTILKHI---KDIPY--LIAGGI-NSENIQTVEQLKLSHQGYDIASGIETNGRKDINKMTAIVN  201 (207)
T ss_pred             -----------CcEeChHHhhhc---cCCCE--EEECCC-CHHHHHHHHhcCCCCCEEEcccccCCCCCCCHHHHHHHHH
Confidence                       122357776655   23588  458999 6999999874  5899999999887432 12456778888


Q ss_pred             HHHcC
Q 037779          271 AVTNY  275 (310)
Q Consensus       271 ~~~~~  275 (310)
                      .+++.
T Consensus       202 ~v~~~  206 (207)
T PRK13958        202 IVKGD  206 (207)
T ss_pred             HHHhc
Confidence            77643

>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=97.86  E-value=0.00015  Score=67.21  Aligned_cols=96  Identities=16%  Similarity=0.119  Sum_probs=67.5

Q ss_pred             ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779          125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK  204 (310)
Q Consensus       125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  204 (310)
                      +..+.++.+++..+...+.+++.|.+|+..+++.|+|+|..-..                          +++.+     
T Consensus       185 ~i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~~gaDiI~LDnm--------------------------~~e~v-----  233 (289)
T PRK07896        185 SVVAALRAVRAAAPDLPCEVEVDSLEQLDEVLAEGAELVLLDNF--------------------------PVWQT-----  233 (289)
T ss_pred             cHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHcCCCEEEeCCC--------------------------CHHHH-----
Confidence            34456666666555678999999999999999999999987521                          11111     


Q ss_pred             cCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          205 NIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       205 ~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                           .+.++.+++. .++.+  .++||| +++++.++.++|+|.+.+|+..+.++
T Consensus       234 -----k~av~~~~~~~~~v~i--eaSGGI-~~~ni~~yA~tGvD~Is~galt~sa~  281 (289)
T PRK07896        234 -----QEAVQRRDARAPTVLL--ESSGGL-TLDTAAAYAETGVDYLAVGALTHSVP  281 (289)
T ss_pred             -----HHHHHHHhccCCCEEE--EEECCC-CHHHHHHHHhcCCCEEEeChhhcCCC
Confidence                 1222222222 23333  789999 69999999999999999999777543

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=97.85  E-value=6.8e-05  Score=67.80  Aligned_cols=51  Identities=22%  Similarity=0.372  Sum_probs=44.9

Q ss_pred             CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779          208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD  260 (310)
Q Consensus       208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d  260 (310)
                      ...++++.+.+..++||  +++|||.+.+++.++++.|+++|++|++++..++
T Consensus        58 ~~~~~i~~i~~~~~~pv--~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~~~p~  108 (243)
T cd04731          58 TMLDVVERVAEEVFIPL--TVGGGIRSLEDARRLLRAGADKVSINSAAVENPE  108 (243)
T ss_pred             ccHHHHHHHHHhCCCCE--EEeCCCCCHHHHHHHHHcCCceEEECchhhhChH
Confidence            36778888888778999  6799999999999999999999999999998543

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>PRK08185 hypothetical protein; Provisional

Probab=97.85  E-value=0.0045  Score=57.41  Aligned_cols=177  Identities=16%  Similarity=0.156  Sum_probs=109.1

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EV  123 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~  123 (310)
                      ...+++++.+...|.++.  +...++ .|.   .-...++.+.+..++||.++ |.-.+++.++.+.+.|.+.|... ..
T Consensus        28 avi~AAee~~sPvIl~~~--~~~~~~-~~~---~~~~~~~~~a~~~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D~S~  101 (283)
T PRK08185         28 AVVEEAEANNAPAIIAIH--PNELDF-LGD---NFFAYVRERAKRSPVPFVIHLDHGATIEDVMRAIRCGFTSVMIDGSL  101 (283)
T ss_pred             HHHHHHHHhCCCEEEEeC--cchhhh-ccH---HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeCCC
Confidence            347778888888876652  111111 121   12445666677789999887 33335677888889999998732 23


Q ss_pred             CChhHHHH-------HHHhcCCCC----cE----------Eee---cCCHHHHHHHHHh-CCCEEEEe-cCCCCCchHHH
Q 037779          124 LTPADEEN-------HINKHNFRV----PF----------VCG---CRNLGESLRRIRE-GAAMIRTK-GEAGTGNIVEA  177 (310)
Q Consensus       124 ~~~~~~~~-------~~~~~~~~l----~v----------~~~---v~t~~ea~~a~~~-Gad~I~v~-g~~~~~~~~~~  177 (310)
                      ++.++.++       .+++.+..+    ..          ..+   .++++|+.+..+. |+|++.+. |..++-     
T Consensus       102 l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~-----  176 (283)
T PRK08185        102 LPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGI-----  176 (283)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCC-----
Confidence            44443332       223222111    00          111   4588899988865 99999873 222110     


Q ss_pred             HHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCC-HHHHHHHHHcCCCEEEEccccc
Q 037779          178 VRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVAT-PADAAMMMQLGCDGVFVGSGVF  256 (310)
Q Consensus       178 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t-~~di~~~~~~GadgV~VGsai~  256 (310)
                                   +++-.+         ..-++++++.+++..++|+++.  ||++. .++++++.+.|..-|=++|.+.
T Consensus       177 -------------y~~~~k---------p~L~~e~l~~I~~~~~iPLVlH--Ggsg~~~e~~~~ai~~GI~KiNi~T~l~  232 (283)
T PRK08185        177 -------------YPKDKK---------PELQMDLLKEINERVDIPLVLH--GGSANPDAEIAESVQLGVGKINISSDMK  232 (283)
T ss_pred             -------------cCCCCC---------CCcCHHHHHHHHHhhCCCEEEE--CCCCCCHHHHHHHHHCCCeEEEeChHHH
Confidence                         111000         1125888999988778999877  55544 4779999999999999999887


Q ss_pred             c
Q 037779          257 K  257 (310)
Q Consensus       257 ~  257 (310)
                      .
T Consensus       233 ~  233 (283)
T PRK08185        233 Y  233 (283)
T ss_pred             H
Confidence            6

>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]

Probab=97.84  E-value=0.0012  Score=57.37  Aligned_cols=58  Identities=24%  Similarity=0.523  Sum_probs=50.1

Q ss_pred             CCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHH
Q 037779          207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       207 ~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~  266 (310)
                      +.+.+++..+.+...-||  +.+|||.-+|++..+..+|++||+||+++++...|.+..+
T Consensus       167 G~~~E~l~~~~~~s~~pV--llGGGV~g~Edlel~~~~Gv~gvLvaTalh~G~vple~~~  224 (229)
T COG1411         167 GPDYELLTKVLELSEHPV--LLGGGVGGMEDLELLLGMGVSGVLVATALHEGVVPLEVEQ  224 (229)
T ss_pred             CCCHHHHHHHHHhccCce--eecCCcCcHHHHHHHhcCCCceeeehhhhhcCcCcHHHHh
Confidence            467888888888767799  4599999999999999999999999999999998876543

>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain

Probab=97.84  E-value=0.00064  Score=65.47  Aligned_cols=55  Identities=15%  Similarity=0.146  Sum_probs=46.1

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRA  265 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~  265 (310)
                      .+++...+++..++||  |+.|||.+++++.++++.| +|.|++|++++..++....+
T Consensus       277 ~~~~~~~ik~~~~~pv--i~~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~  332 (370)
T cd02929         277 QEPYIKFVKQVTSKPV--VGVGRFTSPDKMVEVVKSGILDLIGAARPSIADPFLPKKI  332 (370)
T ss_pred             cHHHHHHHHHHCCCCE--EEeCCCCCHHHHHHHHHcCCCCeeeechHhhhCchHHHHH
Confidence            3566777888778999  6689999999999999976 99999999999987765443

TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.

>KOG0538 consensus Glycolate oxidase [Energy production and conversion]

Probab=97.83  E-value=0.00012  Score=67.46  Aligned_cols=95  Identities=26%  Similarity=0.476  Sum_probs=69.6

Q ss_pred             HHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCc
Q 037779          131 NHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAP  209 (310)
Q Consensus       131 ~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~  209 (310)
                      +.++.+ -.+++++ ++-+.+|++.|.+.|++-|.+.++++                  |.+.+            ..++
T Consensus       216 ~wLr~~-T~LPIvvKGilt~eDA~~Ave~G~~GIIVSNHGg------------------RQlD~------------vpAt  264 (363)
T KOG0538|consen  216 KWLRSI-TKLPIVVKGVLTGEDARKAVEAGVAGIIVSNHGG------------------RQLDY------------VPAT  264 (363)
T ss_pred             HHHHhc-CcCCeEEEeecccHHHHHHHHhCCceEEEeCCCc------------------cccCc------------ccch
Confidence            455442 2467666 69999999999999999777764422                  11211            2345


Q ss_pred             HHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          210 YDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       210 ~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      .+.++++.+.  .++||  +..||+.+..|+.+++.+||.+|.+|+.+..+
T Consensus       265 I~~L~Evv~aV~~ri~V--~lDGGVR~G~DVlKALALGAk~VfiGRP~v~g  313 (363)
T KOG0538|consen  265 IEALPEVVKAVEGRIPV--FLDGGVRRGTDVLKALALGAKGVFIGRPIVWG  313 (363)
T ss_pred             HHHHHHHHHHhcCceEE--EEecCcccchHHHHHHhcccceEEecCchhee
Confidence            6666666654  47899  55899999999999999999999999987763

>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=97.82  E-value=0.00016  Score=66.70  Aligned_cols=97  Identities=18%  Similarity=0.232  Sum_probs=67.1

Q ss_pred             hhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhcc
Q 037779          126 PADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN  205 (310)
Q Consensus       126 ~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  205 (310)
                      ....++.++...+...+.+++.|.+|+..++++|+|+|...+.                          +++.       
T Consensus       169 i~~av~~~r~~~~~~kIeVEv~~leea~~a~~agaDiI~LDn~--------------------------~~e~-------  215 (278)
T PRK08385        169 LEEAIRRAKEFSVYKVVEVEVESLEDALKAAKAGADIIMLDNM--------------------------TPEE-------  215 (278)
T ss_pred             HHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHcCcCEEEECCC--------------------------CHHH-------
Confidence            4455566666556678999999999999999999999887521                          1111       


Q ss_pred             CCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          206 IAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       206 ~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                         -.+.+..+++.. +-.+.+.++||| +++++.++.++|+|.+.+|+..+.++
T Consensus       216 ---l~~~v~~l~~~~~~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~galt~sa~  266 (278)
T PRK08385        216 ---IREVIEALKREGLRERVKIEVSGGI-TPENIEEYAKLDVDVISLGALTHSVR  266 (278)
T ss_pred             ---HHHHHHHHHhcCcCCCEEEEEECCC-CHHHHHHHHHcCCCEEEeChhhcCCC
Confidence               122233333211 112333789999 69999999999999999999776543

>cd02812 PcrB_like PcrB_like proteins

Probab=97.80  E-value=3.7e-05  Score=68.54  Aligned_cols=49  Identities=27%  Similarity=0.441  Sum_probs=44.5

Q ss_pred             CcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          208 APYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       208 ~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      .+.++++.+++.. ++|+  +++|||+|++++++++++|||+|++||++++.
T Consensus       161 ~~~e~I~~v~~~~~~~pl--~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~  210 (219)
T cd02812         161 GPPEVVRAVKKVLGDTPL--IVGGGIRSGEQAKEMAEAGADTIVVGNIVEED  210 (219)
T ss_pred             CCHHHHHHHHHhcCCCCE--EEeCCCCCHHHHHHHHHcCCCEEEECchhhCC
Confidence            4688899998876 8999  56999999999999999999999999999984

One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=97.79  E-value=0.00015  Score=65.96  Aligned_cols=52  Identities=21%  Similarity=0.364  Sum_probs=45.8

Q ss_pred             CCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779          207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD  260 (310)
Q Consensus       207 ~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d  260 (310)
                      ..++++++.+.+..++||  ++.|||.|.+++.++++.||++|++|+.+++.++
T Consensus        60 ~~~~~~i~~i~~~~~ipv--~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~~p~  111 (253)
T PRK02083         60 DTMLDVVERVAEQVFIPL--TVGGGIRSVEDARRLLRAGADKVSINSAAVANPE  111 (253)
T ss_pred             cchHHHHHHHHHhCCCCE--EeeCCCCCHHHHHHHHHcCCCEEEEChhHhhCcH
Confidence            346888888888778999  6799999999999999999999999999998654

>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=97.78  E-value=0.00033  Score=65.00  Aligned_cols=95  Identities=17%  Similarity=0.118  Sum_probs=67.8

Q ss_pred             ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779          125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK  204 (310)
Q Consensus       125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  204 (310)
                      +..+.++.+++......+.+++.|.+|++.++++|+|+|.....                          +++.+     
T Consensus       191 ~i~~av~~~r~~~~~~kIeVEvetleea~eA~~aGaDiImLDnm--------------------------spe~l-----  239 (294)
T PRK06978        191 GVGAALDAAFALNAGVPVQIEVETLAQLETALAHGAQSVLLDNF--------------------------TLDMM-----  239 (294)
T ss_pred             CHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHcCCCEEEECCC--------------------------CHHHH-----
Confidence            45567777766444567999999999999999999999987521                          11111     


Q ss_pred             cCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779          205 NIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD  260 (310)
Q Consensus       205 ~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d  260 (310)
                           .+.++.++.  ++.+  -++||| |++++.++.++|+|.+.+|+-.+.++.
T Consensus       240 -----~~av~~~~~--~~~l--EaSGGI-t~~ni~~yA~tGVD~IS~galthsa~~  285 (294)
T PRK06978        240 -----REAVRVTAG--RAVL--EVSGGV-NFDTVRAFAETGVDRISIGALTKDVRA  285 (294)
T ss_pred             -----HHHHHhhcC--CeEE--EEECCC-CHHHHHHHHhcCCCEEEeCccccCCcc
Confidence                 112222221  2333  689999 699999999999999999997776553

>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART)

Probab=97.78  E-value=0.0018  Score=58.98  Aligned_cols=193  Identities=20%  Similarity=0.212  Sum_probs=97.5

Q ss_pred             HHHHHHHHHcCCcEEEecc--cccchhh-hcCCCCCCCC-hHHHH----HHHhhc-CcceEeeccc----cc-hHHHHHH
Q 037779           45 PEQARIAEEAGACAVMALE--RVPADIR-AQGGVARMSD-PQLIK----QIKSSV-TIPVMAKARI----GH-FVEAQIL  110 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~--~~~~d~r-~~~G~~~~~~-~~~i~----~i~~~~-~lPv~~kd~i----~~-~~~~~~~  110 (310)
                      -=.|+..+.+|+|-|..+|  +..-..+ ...|-....| .+.+.    ++-..+ ++||+....-    .+ ....+.+
T Consensus        25 GlsAk~ae~gGaDlI~~ynsGrfR~~G~~SlagllpygnaN~iv~em~~eiLp~v~~tPViaGv~atDP~~~~~~fl~~l  104 (268)
T PF09370_consen   25 GLSAKCAEKGGADLILIYNSGRFRMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDTPVIAGVCATDPFRDMDRFLDEL  104 (268)
T ss_dssp             HHHHHHHHHTT-SEEEE-HHHHHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS-EEEEE-TT-TT--HHHHHHHH
T ss_pred             chhhHHHHhcCCCEEEEecchhHhhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCCCEEEEecCcCCCCcHHHHHHHH
Confidence            3568999999999997776  1111111 0001111111 22233    333333 5899886322    22 2456788


Q ss_pred             HHcCCCeeee-c---------------CCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEe-cCCCCC
Q 037779          111 EAIGVDYVDE-S---------------EVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTK-GEAGTG  172 (310)
Q Consensus       111 ~~aGad~v~~-~---------------~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~-g~~~~~  172 (310)
                      .+.|...|.. +               ..+.-...++.++. +..++..+.=+.|.+|++...++|+|++.+| |...++
T Consensus       105 k~~Gf~GV~NfPTvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~~gl~T~~yvf~~e~A~~M~~AGaDiiv~H~GlT~gG  184 (268)
T PF09370_consen  105 KELGFSGVQNFPTVGLIDGQFRQNLEETGMGYDREVEMIRKAHEKGLFTTAYVFNEEQARAMAEAGADIIVAHMGLTTGG  184 (268)
T ss_dssp             HHHT-SEEEE-S-GGG--HHHHHHHHHTT--HHHHHHHHHHHHHTT-EE--EE-SHHHHHHHHHHT-SEEEEE-SS----
T ss_pred             HHhCCceEEECCcceeeccHHHHHHHhcCCCHHHHHHHHHHHHHCCCeeeeeecCHHHHHHHHHcCCCEEEecCCccCCC
Confidence            8899999862 1               11222334455554 5567777777889999999999999999988 554333


Q ss_pred             chHHHHHHHHHhhcceecccc-cCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc--CCCEE
Q 037779          173 NIVEAVRHVRSVMGDIRVLRN-MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL--GCDGV  249 (310)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~l~~-~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~--GadgV  249 (310)
                      .+-               ..+ .+-+..    .  ....++.+...+..+=.++++-.|-|.+|+|+..+++.  |++|+
T Consensus       185 ~~G---------------a~~~~sl~~a----~--~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~~~~l~~t~~~~Gf  243 (268)
T PF09370_consen  185 SIG---------------AKTALSLEEA----A--ERIQEIFDAARAVNPDIIVLCHGGPIATPEDAQYVLRNTKGIHGF  243 (268)
T ss_dssp             ---------------------S--HHHH----H--HHHHHHHHHHHCC-TT-EEEEECTTB-SHHHHHHHHHH-TTEEEE
T ss_pred             CcC---------------ccccCCHHHH----H--HHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHhcCCCCCEE
Confidence            210               000 000000    0  00122333333322223444668889999999999974  69999


Q ss_pred             EEccccccC
Q 037779          250 FVGSGVFKS  258 (310)
Q Consensus       250 ~VGsai~~~  258 (310)
                      .-||.+=+-
T Consensus       244 ~G~Ss~ERl  252 (268)
T PF09370_consen  244 IGASSMERL  252 (268)
T ss_dssp             EESTTTTHH
T ss_pred             ecccchhhc
Confidence            999988773

Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.

>PRK09016 quinolinate phosphoribosyltransferase; Validated

Probab=97.77  E-value=0.00034  Score=64.99  Aligned_cols=93  Identities=19%  Similarity=0.143  Sum_probs=65.7

Q ss_pred             hhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhcc
Q 037779          126 PADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN  205 (310)
Q Consensus       126 ~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  205 (310)
                      ..+.++.++...+..++.+++.|.+|++.+++.|+|+|..-..                          +++.       
T Consensus       195 i~~av~~~r~~~~~~kIeVEv~sleea~ea~~~gaDiI~LDn~--------------------------s~e~-------  241 (296)
T PRK09016        195 IRQAVEKAFWLHPDVPVEVEVENLDELDQALKAGADIIMLDNF--------------------------TTEQ-------  241 (296)
T ss_pred             HHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHcCCCEEEeCCC--------------------------ChHH-------
Confidence            4455555655555678999999999999999999999987421                          1111       


Q ss_pred             CCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          206 IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       206 ~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                         -.+.++.++.  ++.+  -|+||| +++++.++.++|+|.+.+|+-...++
T Consensus       242 ---~~~av~~~~~--~~~i--eaSGGI-~~~ni~~yA~tGVD~Is~galthsa~  287 (296)
T PRK09016        242 ---MREAVKRTNG--RALL--EVSGNV-TLETLREFAETGVDFISVGALTKHVQ  287 (296)
T ss_pred             ---HHHHHHhhcC--CeEE--EEECCC-CHHHHHHHHhcCCCEEEeCccccCCC
Confidence               1122222221  3333  789999 69999999999999999999666544

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.74  E-value=0.00083  Score=70.63  Aligned_cols=49  Identities=6%  Similarity=0.076  Sum_probs=41.4

Q ss_pred             HHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccCCCH
Q 037779          211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSGDP  261 (310)
Q Consensus       211 ~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~~dp  261 (310)
                      .+.+.+++..++||  ++.|+|.+++++.++++. ++|.|++|+.++..++.
T Consensus       677 ~~~~~ik~~~~~pv--~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~~  726 (765)
T PRK08255        677 PFADRIRNEAGIAT--IAVGAISEADHVNSIIAAGRADLCALARPHLADPAW  726 (765)
T ss_pred             HHHHHHHHHcCCEE--EEeCCCCCHHHHHHHHHcCCcceeeEcHHHHhCccH
Confidence            45567777678899  678999999999999986 59999999999997753

>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional

Probab=97.72  E-value=0.0058  Score=60.34  Aligned_cols=182  Identities=18%  Similarity=0.214  Sum_probs=106.7

Q ss_pred             CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc-chHHH-HHHHHcCCCeee
Q 037779           42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG-HFVEA-QILEAIGVDYVD  119 (310)
Q Consensus        42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~-~~~~~-~~~~~aGad~v~  119 (310)
                      ..+++.++.+.++|++++-.+ ..|       .|-+.-+++..+++.+.+.+ -.+..+.+ ..+.+ +.+.+++.|.+.
T Consensus       264 it~~eda~~a~~~GaD~lGfI-f~~-------~SpR~V~~~~a~~i~~~l~v-~~VgVfv~~~~~~i~~i~~~~~lD~vQ  334 (454)
T PRK09427        264 LTRPQDAKAAYDAGAVYGGLI-FVE-------KSPRYVSLEQAQEIIAAAPL-RYVGVFRNADIEDIVDIAKQLSLAAVQ  334 (454)
T ss_pred             CCCHHHHHHHHhCCCCEEeeE-eCC-------CCCCCCCHHHHHHHHHhCCC-CEEEEEeCCCHHHHHHHHHHcCCCEEE
Confidence            345788999999999998322 112       23333457788888776541 11233333 23344 566779999987


Q ss_pred             ecCCCChhHHHHHHHhc-CCCCcEE--eecCCHHHHHHHHHhCCCEEEEec-CCCCCchHHHHHHHHHhhcceecccccC
Q 037779          120 ESEVLTPADEENHINKH-NFRVPFV--CGCRNLGESLRRIREGAAMIRTKG-EAGTGNIVEAVRHVRSVMGDIRVLRNMD  195 (310)
Q Consensus       120 ~~~~~~~~~~~~~~~~~-~~~l~v~--~~v~t~~ea~~a~~~Gad~I~v~g-~~~~~~~~~~~~~~~~~~~~~~~l~~~~  195 (310)
                      .+...++. ..+.+++. ..++.++  ..+.+..+.  ....++|++-+.. .+++|                       
T Consensus       335 LHG~e~~~-~~~~l~~~~~~~~~iikai~v~~~~~~--~~~~~~d~~LlDs~~GGtG-----------------------  388 (454)
T PRK09427        335 LHGDEDQA-YIDALREALPKTCQIWKAISVGDTLPA--RDLQHVDRYLLDNGQGGTG-----------------------  388 (454)
T ss_pred             eCCCCCHH-HHHHHHhhcCCCCeEEEEeecCchhhh--hhhcCCCEEEEcCCCCCCC-----------------------
Confidence            55444444 44455542 2223333  233322221  1123577776542 11222                       


Q ss_pred             chhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC---CCHHHHHHHHHHHH
Q 037779          196 DDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS---GDPVRRARAIVQAV  272 (310)
Q Consensus       196 ~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~---~dp~~~~~~~~~~~  272 (310)
                                ..-+|.++....   ..|+  +.+||| +|+|+.+++..+..||=|.|.+=..   .| ...+++|.+.+
T Consensus       389 ----------~~~DW~~l~~~~---~~p~--iLAGGL-~peNV~~ai~~~P~gVDVsSGVE~~pG~KD-~~Ki~~Fi~~v  451 (454)
T PRK09427        389 ----------QTFDWSLLPGQS---LDNV--LLAGGL-NPDNCQQAAQLGCAGLDFNSGVESAPGIKD-AQKLASVFQTL  451 (454)
T ss_pred             ----------CccChHHhhhcc---cCCE--EEECCC-CHHHHHHHHhcCCCEEEeCCcccCCCCCcC-HHHHHHHHHHH
Confidence                      123566554322   4688  458999 6999999999999999999999754   24 45778888877


Q ss_pred             HcC
Q 037779          273 TNY  275 (310)
Q Consensus       273 ~~~  275 (310)
                      +.|
T Consensus       452 r~~  454 (454)
T PRK09427        452 RAY  454 (454)
T ss_pred             hhC
Confidence            643

>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=97.69  E-value=0.00056  Score=63.36  Aligned_cols=94  Identities=12%  Similarity=0.046  Sum_probs=66.0

Q ss_pred             ChhHHHHHHHhcCC-CCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779          125 TPADEENHINKHNF-RVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA  203 (310)
Q Consensus       125 ~~~~~~~~~~~~~~-~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  203 (310)
                      +..+.++.+++..+ ...+.+++.|.+|++.++++|+|+|.....                          +++.+    
T Consensus       182 ~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~agaDiImLDnm--------------------------spe~l----  231 (290)
T PRK06559        182 SVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAAGADIIMLDNM--------------------------SLEQI----  231 (290)
T ss_pred             cHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHcCCCEEEECCC--------------------------CHHHH----
Confidence            34555666666433 578999999999999999999999987421                          11111    


Q ss_pred             ccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          204 KNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       204 ~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                            .+.+..+++  ++.+  -++||| +++++.++.++|+|.+.+|+-.+.++
T Consensus       232 ------~~av~~~~~--~~~l--eaSGGI-~~~ni~~yA~tGVD~Is~galthsa~  276 (290)
T PRK06559        232 ------EQAITLIAG--RSRI--ECSGNI-DMTTISRFRGLAIDYVSSGSLTHSAK  276 (290)
T ss_pred             ------HHHHHHhcC--ceEE--EEECCC-CHHHHHHHHhcCCCEEEeCccccCCc
Confidence                  122222222  3333  789999 69999999999999999999665443

>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain

Probab=97.67  E-value=0.00037  Score=67.60  Aligned_cols=106  Identities=21%  Similarity=0.288  Sum_probs=65.8

Q ss_pred             HHHHHHHhcCCCCcEEeec---CCHHHHHHHHHhC-CCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779          128 DEENHINKHNFRVPFVCGC---RNLGESLRRIREG-AAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA  203 (310)
Q Consensus       128 ~~~~~~~~~~~~l~v~~~v---~t~~ea~~a~~~G-ad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  203 (310)
                      ++++.+++...+.++++..   .+.+++.++.+.+ +|+|.+.|..+++...              ......        
T Consensus       203 ~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~--------------~~~~~~--------  260 (392)
T cd02808         203 QLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAA--------------PLTFID--------  260 (392)
T ss_pred             HHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCC--------------cccccc--------
Confidence            4455555544336665532   2577888887766 9999998664322100              000000        


Q ss_pred             ccCC-CcHHHHHHHHhc-------CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          204 KNIA-APYDLVMQTKQL-------GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       204 ~~~~-~~~~l~~~i~~~-------~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                       +++ +....+..+.+.       .++||  |++|||.++.|+.+++.+|||+|.+|++++.+
T Consensus       261 -~~g~pt~~~L~~v~~~~~~~~~~~~i~v--iasGGI~~g~Dv~kalaLGAd~V~ig~~~l~a  320 (392)
T cd02808         261 -HVGLPTELGLARAHQALVKNGLRDRVSL--IASGGLRTGADVAKALALGADAVGIGTAALIA  320 (392)
T ss_pred             -cCCccHHHHHHHHHHHHHHcCCCCCCeE--EEECCCCCHHHHHHHHHcCCCeeeechHHHHh
Confidence             011 112233333221       25888  67999999999999999999999999999964

GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.

>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P)

Probab=97.66  E-value=4.4e-05  Score=68.36  Aligned_cols=56  Identities=23%  Similarity=0.482  Sum_probs=42.3

Q ss_pred             HHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHH
Q 037779          210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARA  267 (310)
Q Consensus       210 ~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~  267 (310)
                      .+..+..+...++|+  |.+|||.|+++++++.++|||.|++|++|.+..+..+..+.
T Consensus       171 ~~v~~~~~~~~~~~L--ivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~~~e~~~~~  226 (230)
T PF01884_consen  171 EEVIAAVKKLSDIPL--IVGGGIRSPEQAREMAEAGADTIVVGNAIEEDPDLEEALET  226 (230)
T ss_dssp             HHHHHHHHHSSSSEE--EEESS--SHHHHHHHHCTTSSEEEESCHHHHHH-HHHHHTH
T ss_pred             HHHHHHHHhcCCccE--EEeCCcCCHHHHHHHHHCCCCEEEECCEEEEcchHHHHHHH
Confidence            556655566668888  67999999999999999999999999999996653443333

This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.

>PRK06096 molybdenum transport protein ModD; Provisional

Probab=97.64  E-value=0.0013  Score=61.00  Aligned_cols=93  Identities=10%  Similarity=0.120  Sum_probs=64.5

Q ss_pred             hhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhcc
Q 037779          126 PADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN  205 (310)
Q Consensus       126 ~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  205 (310)
                      ..+.++.+++..+...+.+++.|.+|++.++++|+|+|.....                          +++.+      
T Consensus       176 i~~av~~~r~~~~~~kIeVEv~tleqa~ea~~agaDiI~LDn~--------------------------~~e~l------  223 (284)
T PRK06096        176 WSGAINQLRRHAPEKKIVVEADTPKEAIAALRAQPDVLQLDKF--------------------------SPQQA------  223 (284)
T ss_pred             HHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHcCCCEEEECCC--------------------------CHHHH------
Confidence            4455666666555677999999999999999999999987421                          11111      


Q ss_pred             CCCcHHHHHHHHh-cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          206 IAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       206 ~~~~~~l~~~i~~-~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                          .+.++.+++ ..++.+  -++||| |++++.++.++|+|.+.+|+- +.+
T Consensus       224 ----~~av~~~~~~~~~~~l--eaSGGI-~~~ni~~yA~tGvD~Is~gal-~~a  269 (284)
T PRK06096        224 ----TEIAQIAPSLAPHCTL--SLAGGI-NLNTLKNYADCGIRLFITSAP-YYA  269 (284)
T ss_pred             ----HHHHHHhhccCCCeEE--EEECCC-CHHHHHHHHhcCCCEEEECcc-ccC
Confidence                122233321 123333  689999 699999999999999987775 554

>PRK00507 deoxyribose-phosphate aldolase; Provisional

Probab=97.63  E-value=0.0011  Score=59.37  Aligned_cols=42  Identities=26%  Similarity=0.319  Sum_probs=31.9

Q ss_pred             HHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779          210 YDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       210 ~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs  253 (310)
                      .+.++.+.+.  .+++|  .++|||.|.+++.+++++||+-+...+
T Consensus       166 ~~~v~~m~~~~~~~~~I--KasGGIrt~~~a~~~i~aGA~riGtS~  209 (221)
T PRK00507        166 VEDVKLMRETVGPRVGV--KASGGIRTLEDALAMIEAGATRLGTSA  209 (221)
T ss_pred             HHHHHHHHHHhCCCceE--EeeCCcCCHHHHHHHHHcCcceEccCc
Confidence            3444444443  35788  679999999999999999999887755

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=97.63  E-value=0.00053  Score=61.76  Aligned_cols=163  Identities=19%  Similarity=0.242  Sum_probs=92.0

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhh--cCcceEeecccc------c-----hHHHHHHHH
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSS--VTIPVMAKARIG------H-----FVEAQILEA  112 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~--~~lPv~~kd~i~------~-----~~~~~~~~~  112 (310)
                      +.++.+.+.|+++|. +     .+ .+        ....+..-..  ..++++++.-.+      .     ...++.+.+
T Consensus        23 ~~~~~a~~~~~~av~-v-----~p-~~--------~~~~~~~~~~~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~   87 (236)
T PF01791_consen   23 KLCREAIEYGFDAVC-V-----TP-GY--------VKPAAELLAGSGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIR   87 (236)
T ss_dssp             HHHHHHHHHTSSEEE-E-----EG-GG--------HHHHHHHSTTSTSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHH
T ss_pred             HHHHHHHHhCCCEEE-E-----CH-HH--------HHHHHHHhhccccccceEEEeCCCCCccccccccchHHHHHHHHH
Confidence            578889999999983 3     12 11        2222222222  235555543222      1     235567788


Q ss_pred             cCCCeeeec-CC---CC--h----hHHHHHHHh-cCCCCcEEeecC-CHHH-------------HHHHHHhCCCEEEEec
Q 037779          113 IGVDYVDES-EV---LT--P----ADEENHINK-HNFRVPFVCGCR-NLGE-------------SLRRIREGAAMIRTKG  167 (310)
Q Consensus       113 aGad~v~~~-~~---~~--~----~~~~~~~~~-~~~~l~v~~~v~-t~~e-------------a~~a~~~Gad~I~v~g  167 (310)
                      .|||.|... ..   .+  .    .++.+..+. +..+++++++.. +..+             ++.+.++|+|+|++.-
T Consensus        88 ~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~t  167 (236)
T PF01791_consen   88 LGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLRGEEVADEKKPDLIARAARIAAELGADFVKTST  167 (236)
T ss_dssp             TT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-
T ss_pred             cCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecCchhhcccccHHHHHHHHHHHHHhCCCEEEecC
Confidence            999998621 10   11  1    122222223 456788877632 2223             2344578999999872


Q ss_pred             CCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCC----EEEEccCCC------CCHHH
Q 037779          168 EAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLP----VVHFAAGGV------ATPAD  237 (310)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iP----Vv~ia~GGI------~t~~d  237 (310)
                      ....+..                                ..+.+..+.+.+..++|    |  .++|||      .+.++
T Consensus       168 g~~~~~t--------------------------------~~~~~~~~~~~~~~~~p~~~~V--k~sGGi~~~~~~~~l~~  213 (236)
T PF01791_consen  168 GKPVGAT--------------------------------PEDVELMRKAVEAAPVPGKVGV--KASGGIDAEDFLRTLED  213 (236)
T ss_dssp             SSSSCSH--------------------------------HHHHHHHHHHHHTHSSTTTSEE--EEESSSSHHHHHHSHHH
T ss_pred             Ccccccc--------------------------------HHHHHHHHHHHHhcCCCcceEE--EEeCCCChHHHHHHHHH
Confidence            2111110                                01233444444444678    8  568999      99999


Q ss_pred             HHHHHHcCC--CEEEEcccccc
Q 037779          238 AAMMMQLGC--DGVFVGSGVFK  257 (310)
Q Consensus       238 i~~~~~~Ga--dgV~VGsai~~  257 (310)
                      +.+++++||  .|+..|+.|++
T Consensus       214 a~~~i~aGa~~~G~~~Gr~i~q  235 (236)
T PF01791_consen  214 ALEFIEAGADRIGTSSGRNIWQ  235 (236)
T ss_dssp             HHHHHHTTHSEEEEEEHHHHHT
T ss_pred             HHHHHHcCChhHHHHHHHHHHc
Confidence            999999999  99999999886

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>PLN02363 phosphoribosylanthranilate isomerase

Probab=97.62  E-value=0.023  Score=52.05  Aligned_cols=186  Identities=18%  Similarity=0.163  Sum_probs=103.2

Q ss_pred             CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCc-ce-Eeecccc-chHHH-HHHHHcCCCe
Q 037779           42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTI-PV-MAKARIG-HFVEA-QILEAIGVDY  117 (310)
Q Consensus        42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~l-Pv-~~kd~i~-~~~~~-~~~~~aGad~  117 (310)
                      ..+++.|+.+.++|++++-.+ ..+       .|-+.-+++..+++.+.+.- ++ .+..+.+ ..+++ +.+...|.|.
T Consensus        54 it~~eda~~a~~~GaD~iGfI-f~~-------~SpR~Vs~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~  125 (256)
T PLN02363         54 ITSARDAAMAVEAGADFIGMI-LWP-------KSKRSISLSVAKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLEL  125 (256)
T ss_pred             CCcHHHHHHHHHcCCCEEEEe-cCC-------CCCCcCCHHHHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCE
Confidence            456899999999999998332 112       23334457888888765521 11 1223332 22343 5667799999


Q ss_pred             eeecCCCChhHHHHHHHhcCCCCcEEeecCCHHH-HHHHHH---hCCCEEEEecC-CCCCchHHHHHHHHHhhcceeccc
Q 037779          118 VDESEVLTPADEENHINKHNFRVPFVCGCRNLGE-SLRRIR---EGAAMIRTKGE-AGTGNIVEAVRHVRSVMGDIRVLR  192 (310)
Q Consensus       118 v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~e-a~~a~~---~Gad~I~v~g~-~~~~~~~~~~~~~~~~~~~~~~l~  192 (310)
                      |..+...++ +..+.++.. ..+.-.+.+.+..+ ......   ..+|++-+... +++|                    
T Consensus       126 VQLHG~e~~-~~~~~l~~~-~~iikai~v~~~~~~~~~~~~~~~~~~D~~LlDs~~GGtG--------------------  183 (256)
T PLN02363        126 VQLHGNGSR-AAFSRLVRE-RKVIYVLNANEDGKLLNVVPEEDCHLADWILVDSATGGSG--------------------  183 (256)
T ss_pred             EEECCCCCH-HHHHHhhcC-CcEEEEEEECchHHHHHHHHhhccccCCEEEEeCCCCCCC--------------------
Confidence            975544343 344444421 22222223333222 122211   23676655422 1222                    


Q ss_pred             ccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccC----CCHHHHHHH
Q 037779          193 NMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKS----GDPVRRARA  267 (310)
Q Consensus       193 ~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~----~dp~~~~~~  267 (310)
                                   ..-+|+.+....-....|+  +.+||| +++++.++++ .+..||=|.|.+=..    .| .+.+++
T Consensus       184 -------------~t~DW~~l~~~~~~~~~p~--iLAGGL-~peNV~~ai~~~~P~GVDVsSGVE~~pG~~KD-~~KI~~  246 (256)
T PLN02363        184 -------------KGFNWQNFKLPSVRSRNGW--LLAGGL-TPENVHEAVSLLKPTGVDVSSGICGPDGIRKD-PSKISS  246 (256)
T ss_pred             -------------CccCHHHhcccccccCCCE--EEECCC-CHHHHHHHHHhcCCcEEEeCCcccCCCCcccC-HHHHHH
Confidence                         1224554431000123587  458999 6999999986 699999999999753    23 356677


Q ss_pred             HHHHHHc
Q 037779          268 IVQAVTN  274 (310)
Q Consensus       268 ~~~~~~~  274 (310)
                      |.+.+++
T Consensus       247 fv~~vr~  253 (256)
T PLN02363        247 FISAVKS  253 (256)
T ss_pred             HHHHHHh
Confidence            7777653

>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=97.62  E-value=0.00064  Score=62.83  Aligned_cols=92  Identities=17%  Similarity=0.136  Sum_probs=65.1

Q ss_pred             hhHHHHHHHhcCC-CCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779          126 PADEENHINKHNF-RVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK  204 (310)
Q Consensus       126 ~~~~~~~~~~~~~-~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  204 (310)
                      ..+.++.++++.+ ...+.+++.|.+|++.+++.|+|+|.....                          +++.+     
T Consensus       180 i~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~~gaDiI~LDn~--------------------------s~e~l-----  228 (281)
T PRK06106        180 VREAIRRARAGVGHLVKIEVEVDTLDQLEEALELGVDAVLLDNM--------------------------TPDTL-----  228 (281)
T ss_pred             HHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHHcCCCEEEeCCC--------------------------CHHHH-----
Confidence            4455566665433 477999999999999999999999987521                          11110     


Q ss_pred             cCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          205 NIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       205 ~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                           .+.++.++  .+.|+  -++||| +++++.++.++|+|.+.+|+..+.+
T Consensus       229 -----~~av~~~~--~~~~l--eaSGGI-~~~ni~~yA~tGVD~Is~Galthsa  272 (281)
T PRK06106        229 -----REAVAIVA--GRAIT--EASGRI-TPETAPAIAASGVDLISVGWLTHSA  272 (281)
T ss_pred             -----HHHHHHhC--CCceE--EEECCC-CHHHHHHHHhcCCCEEEeChhhcCC
Confidence                 11222222  23455  679999 6999999999999999999966544

>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]

Probab=97.61  E-value=0.0014  Score=62.82  Aligned_cols=55  Identities=29%  Similarity=0.478  Sum_probs=44.7

Q ss_pred             HHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHHH
Q 037779          211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRARA  267 (310)
Q Consensus       211 ~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~~  267 (310)
                      .....++....+|+  |+.|+|.+++++.++++.| +|-|.+|+.+...++....+++
T Consensus       278 ~~a~~i~~~~~~pv--i~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~~k~~~  333 (363)
T COG1902         278 EFAARIKKAVRIPV--IAVGGINDPEQAEEILASGRADLVAMGRPFLADPDLVLKAAE  333 (363)
T ss_pred             HHHHHHHHhcCCCE--EEeCCCCCHHHHHHHHHcCCCCEEEechhhhcCccHHHHHHc
Confidence            34455666567999  6689999999999999997 9999999999998886655443

>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=97.59  E-value=0.00085  Score=61.97  Aligned_cols=93  Identities=16%  Similarity=0.103  Sum_probs=64.9

Q ss_pred             hhHHHHHHHhcCC-CCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779          126 PADEENHINKHNF-RVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK  204 (310)
Q Consensus       126 ~~~~~~~~~~~~~-~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  204 (310)
                      ..+.++.+++..+ ...+.+++.|++|+..+++.|+|+|.....                          +++.+     
T Consensus       179 i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~gaDiImLDn~--------------------------s~e~l-----  227 (281)
T PRK06543        179 LTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAAGVDTIMLDNF--------------------------SLDDL-----  227 (281)
T ss_pred             HHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhcCCCEEEECCC--------------------------CHHHH-----
Confidence            3455555555333 478999999999999999999999987421                          11111     


Q ss_pred             cCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          205 NIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       205 ~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                           .+.+..++.  ...+  -++||| |++++.++.++|+|.+.+|+-.+..+
T Consensus       228 -----~~av~~~~~--~~~l--eaSGgI-~~~ni~~yA~tGVD~Is~galths~~  272 (281)
T PRK06543        228 -----REGVELVDG--RAIV--EASGNV-NLNTVGAIASTGVDVISVGALTHSVR  272 (281)
T ss_pred             -----HHHHHHhCC--CeEE--EEECCC-CHHHHHHHHhcCCCEEEeCccccCCc
Confidence                 122222322  2233  689999 69999999999999999999666544

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.58  E-value=0.00064  Score=61.37  Aligned_cols=49  Identities=16%  Similarity=0.295  Sum_probs=42.8

Q ss_pred             CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      ...++++.+.+...+|+  .+.|||.|.+++++++++||+-|++||..++.
T Consensus        63 ~n~~~I~~i~~~~~~pi--~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~~~  111 (234)
T PRK13587         63 REFDYIKSLRRLTTKDI--EVGGGIRTKSQIMDYFAAGINYCIVGTKGIQD  111 (234)
T ss_pred             chHHHHHHHHhhcCCeE--EEcCCcCCHHHHHHHHHCCCCEEEECchHhcC
Confidence            35778888888778898  56999999999999999999999999987774

>cd04732 HisA HisA

Probab=97.56  E-value=0.00056  Score=61.22  Aligned_cols=50  Identities=22%  Similarity=0.446  Sum_probs=43.8

Q ss_pred             CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                      ..+++++.+.+..++|+  ++.|||.+++++.++++.|||.|++|+..+..+
T Consensus        60 ~~~~~i~~i~~~~~~pv--~~~GgI~~~e~~~~~~~~Gad~vvigs~~l~dp  109 (234)
T cd04732          60 VNLELIEEIVKAVGIPV--QVGGGIRSLEDIERLLDLGVSRVIIGTAAVKNP  109 (234)
T ss_pred             CCHHHHHHHHHhcCCCE--EEeCCcCCHHHHHHHHHcCCCEEEECchHHhCh
Confidence            35778888888778899  568999999999999999999999999999753

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=97.54  E-value=0.0019  Score=60.28  Aligned_cols=112  Identities=21%  Similarity=0.107  Sum_probs=79.1

Q ss_pred             HHHHHHHHcCCcEEEecc-cccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeecC--
Q 037779           46 EQARIAEEAGACAVMALE-RVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESE--  122 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~--  122 (310)
                      +.++.+.+.|+++| ++| .+|...     ..  ...+.++++++.+++||++|.. .+.+.++.+.++|+|.|..+.  
T Consensus       133 ~~i~~~~~~g~~~i-~l~~~~p~~~-----~~--~~~~~i~~l~~~~~~pvivK~v-~s~~~a~~a~~~G~d~I~v~~~g  203 (299)
T cd02809         133 DLLRRAEAAGYKAL-VLTVDTPVLG-----RR--LTWDDLAWLRSQWKGPLILKGI-LTPEDALRAVDAGADGIVVSNHG  203 (299)
T ss_pred             HHHHHHHHcCCCEE-EEecCCCCCC-----CC--CCHHHHHHHHHhcCCCEEEeec-CCHHHHHHHHHCCCCEEEEcCCC
Confidence            56788888999998 565 333211     11  2468899999999999999964 344678899999999986321  


Q ss_pred             ------CCChhHHHHHHHh-cCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779          123 ------VLTPADEENHINK-HNFRVPFVC--GCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       123 ------~~~~~~~~~~~~~-~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                            ..+..+.+..+.+ ....+++++  ++++..++.+++.+|||.|.+.
T Consensus       204 G~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig  256 (299)
T cd02809         204 GRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIG  256 (299)
T ss_pred             CCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence                  1122344444433 222477777  4999999999999999999986

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=97.52  E-value=0.00038  Score=62.31  Aligned_cols=50  Identities=18%  Similarity=0.385  Sum_probs=44.2

Q ss_pred             CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                      ...++++.+.+..++||  ++.|||.+.+++.+++++||++|++|++++..+
T Consensus        61 ~~~~~i~~i~~~~~~pv--~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~~~  110 (233)
T PRK00748         61 VNLELIEAIVKAVDIPV--QVGGGIRSLETVEALLDAGVSRVIIGTAAVKNP  110 (233)
T ss_pred             ccHHHHHHHHHHCCCCE--EEcCCcCCHHHHHHHHHcCCCEEEECchHHhCH
Confidence            45778888877778899  569999999999999999999999999999854

>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed

Probab=97.52  E-value=0.02  Score=53.13  Aligned_cols=174  Identities=14%  Similarity=0.185  Sum_probs=105.4

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EV  123 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~  123 (310)
                      ...+++++.++..|.++.  |...+ +.|..  .-...++...+..++||.++ |.-.+++.+..+.++|.+.|-+. +.
T Consensus        33 avi~AAe~~~sPvIl~~~--~~~~~-~~g~~--~~~~~~~~~A~~~~vPV~lHLDH~~~~e~i~~Ai~~GftSVM~DgS~  107 (283)
T PRK07998         33 SILNAIERSGLPNFIQIA--PTNAQ-LSGYD--YIYEIVKRHADKMDVPVSLHLDHGKTFEDVKQAVRAGFTSVMIDGAA  107 (283)
T ss_pred             HHHHHHHHhCCCEEEECc--HhHHh-hCCHH--HHHHHHHHHHHHCCCCEEEECcCCCCHHHHHHHHHcCCCEEEEeCCC
Confidence            347778888888875551  11111 12210  00234556667789999887 33335677788889999998732 22


Q ss_pred             CChh-------HHHHHHHhcCCCCcEEee-----------------cCCHHHHHHHH-HhCCCEEEEe-cCCCCCchHHH
Q 037779          124 LTPA-------DEENHINKHNFRVPFVCG-----------------CRNLGESLRRI-REGAAMIRTK-GEAGTGNIVEA  177 (310)
Q Consensus       124 ~~~~-------~~~~~~~~~~~~l~v~~~-----------------v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~~~  177 (310)
                      ++.+       ++.+..+.  .|+.+=.+                 .++++++.+-. +.|+|.+.+. |..++.     
T Consensus       108 l~~eeNi~~T~~vve~Ah~--~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~-----  180 (283)
T PRK07998        108 LPFEENIAFTKEAVDFAKS--YGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVHGL-----  180 (283)
T ss_pred             CCHHHHHHHHHHHHHHHHH--cCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccccC-----
Confidence            3332       23333333  33322111                 24667776654 5688877654 332221     


Q ss_pred             HHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          178 VRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       178 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                                   ++.            ..-++++++.+.+..++|+++=-++|+ +.+++++++++|+..|=++|.+..
T Consensus       181 -------------Y~~------------p~l~~~~l~~I~~~~~vPLVlHGgSG~-~~e~~~~ai~~Gi~KiNi~Tel~~  234 (283)
T PRK07998        181 -------------EDI------------PRIDIPLLKRIAEVSPVPLVIHGGSGI-PPEILRSFVNYKVAKVNIASDLRK  234 (283)
T ss_pred             -------------CCC------------CCcCHHHHHHHHhhCCCCEEEeCCCCC-CHHHHHHHHHcCCcEEEECHHHHH
Confidence                         110            122578899998888999976555566 358899999999999999998876

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=97.50  E-value=0.00046  Score=63.19  Aligned_cols=51  Identities=20%  Similarity=0.382  Sum_probs=44.9

Q ss_pred             CCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       207 ~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                      ....++++.+.+...+||  +++|||.+.+++.+++..|+++|++|++++..+
T Consensus        60 ~~n~~~i~~i~~~~~~pv--~~gGGi~s~~d~~~l~~~G~~~vvigs~~~~~~  110 (258)
T PRK01033         60 EPNYELIENLASECFMPL--CYGGGIKTLEQAKKIFSLGVEKVSINTAALEDP  110 (258)
T ss_pred             cccHHHHHHHHHhCCCCE--EECCCCCCHHHHHHHHHCCCCEEEEChHHhcCH
Confidence            446788888888778999  679999999999999999999999999998854

>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases

Probab=97.49  E-value=0.021  Score=50.70  Aligned_cols=190  Identities=16%  Similarity=0.201  Sum_probs=108.9

Q ss_pred             cCCCHHHHHHHHHcCC-cEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccch----HHHHHHHHcCC
Q 037779           41 DVVTPEQARIAEEAGA-CAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHF----VEAQILEAIGV  115 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga-~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~----~~~~~~~~aGa  115 (310)
                      +..+.+..+.+.+.|. +++ --|  |+-.+ ..|.  ..-.+.++++++..+-||.+..+-.+.    ++++.+.+.+-
T Consensus         5 Dsa~~~ei~~~~~~~~i~Gv-TTN--Psll~-k~~~--~~~~~~~~~i~~~~~~~v~~qv~~~~~e~~i~~a~~l~~~~~   78 (211)
T cd00956           5 DTADLEEIKKASETGLLDGV-TTN--PSLIA-KSGR--IDFEAVLKEICEIIDGPVSAQVVSTDAEGMVAEARKLASLGG   78 (211)
T ss_pred             cCCCHHHHHHHHhcCCcCcc-ccC--HHHHH-hcCC--cCHHHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHHHHHhCC
Confidence            3456677777777655 454 111  22222 1121  112466788888777777765443322    34555555533


Q ss_pred             Ceee-ecCCCChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHHHHHhhcceeccc
Q 037779          116 DYVD-ESEVLTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRHVRSVMGDIRVLR  192 (310)
Q Consensus       116 d~v~-~~~~~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~l~  192 (310)
                      ..++ ++......+.++.+++.  ++.+.+. +.|++++..+.++||+||.+. |+..                      
T Consensus        79 ~~~iKIP~T~~gl~ai~~L~~~--gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP~vgR~~----------------------  134 (211)
T cd00956          79 NVVVKIPVTEDGLKAIKKLSEE--GIKTNVTAIFSAAQALLAAKAGATYVSPFVGRID----------------------  134 (211)
T ss_pred             CEEEEEcCcHhHHHHHHHHHHc--CCceeeEEecCHHHHHHHHHcCCCEEEEecChHh----------------------
Confidence            4444 55433334555666554  4555543 789999999999999998775 3311                      


Q ss_pred             ccCchhHHhhhccCCCcHHHHHHHHhc---CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc----CCCHHHHH
Q 037779          193 NMDDDEVFTFAKNIAAPYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK----SGDPVRRA  265 (310)
Q Consensus       193 ~~~~d~~~~~~~~~~~~~~l~~~i~~~---~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~----~~dp~~~~  265 (310)
                      ....|           +.++++.+.+.   .++|.- |...|+.++.++.++.++|+|.|-+.-.+++    .+.....+
T Consensus       135 ~~g~d-----------g~~~i~~i~~~~~~~~~~tk-il~As~r~~~ei~~a~~~Gad~vTv~~~vl~~l~~~~~t~~~v  202 (211)
T cd00956         135 DLGGD-----------GMELIREIRTIFDNYGFDTK-ILAASIRNPQHVIEAALAGADAITLPPDVLEQLLKHPLTDKGV  202 (211)
T ss_pred             hcCCC-----------HHHHHHHHHHHHHHcCCCce-EEecccCCHHHHHHHHHcCCCEEEeCHHHHHHHhcCccHHHHH
Confidence            00111           23333333221   233422 1258899999999999999999999976665    33344555


Q ss_pred             HHHHHHH
Q 037779          266 RAIVQAV  272 (310)
Q Consensus       266 ~~~~~~~  272 (310)
                      +.|.+.+
T Consensus       203 ~~F~~d~  209 (211)
T cd00956         203 EKFLEDW  209 (211)
T ss_pred             HHHHHHh
Confidence            6665443

FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.45  E-value=0.0061  Score=54.25  Aligned_cols=124  Identities=11%  Similarity=0.109  Sum_probs=84.6

Q ss_pred             HHHHHHhhcCcceEeeccccc-hHHHHHHHHcCCCeeeec-CCCChhHHHHHHHhcC---CCCcEEee-cCCHHHHHHHH
Q 037779           83 LIKQIKSSVTIPVMAKARIGH-FVEAQILEAIGVDYVDES-EVLTPADEENHINKHN---FRVPFVCG-CRNLGESLRRI  156 (310)
Q Consensus        83 ~i~~i~~~~~lPv~~kd~i~~-~~~~~~~~~aGad~v~~~-~~~~~~~~~~~~~~~~---~~l~v~~~-v~t~~ea~~a~  156 (310)
                      .++.+.+.-=+||+..+.... ...++.+.+.|...+-++ ......+.++.++++.   +++.++++ +.|.++++.+.
T Consensus         6 ~~~~l~~~~vi~vir~~~~~~a~~~~~al~~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~   85 (213)
T PRK06552          6 ILTKLKANGVVAVVRGESKEEALKISLAVIKGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAI   85 (213)
T ss_pred             HHHHHHHCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHH
Confidence            344555443467766544332 134577888999998644 2223446666676543   35788885 88999999999


Q ss_pred             HhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHH
Q 037779          157 REGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPA  236 (310)
Q Consensus       157 ~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~  236 (310)
                      ++|++|+..  |.                                      .+.++++...+ .++|+  +  =|..|++
T Consensus        86 ~aGA~Fivs--P~--------------------------------------~~~~v~~~~~~-~~i~~--i--PG~~T~~  120 (213)
T PRK06552         86 LAGAQFIVS--PS--------------------------------------FNRETAKICNL-YQIPY--L--PGCMTVT  120 (213)
T ss_pred             HcCCCEEEC--CC--------------------------------------CCHHHHHHHHH-cCCCE--E--CCcCCHH
Confidence            999999873  11                                      12345555444 46788  4  6888999


Q ss_pred             HHHHHHHcCCCEEEE
Q 037779          237 DAAMMMQLGCDGVFV  251 (310)
Q Consensus       237 di~~~~~~GadgV~V  251 (310)
                      ++.+++++|+|.+-+
T Consensus       121 E~~~A~~~Gad~vkl  135 (213)
T PRK06552        121 EIVTALEAGSEIVKL  135 (213)
T ss_pred             HHHHHHHcCCCEEEE
Confidence            999999999999997

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.42  E-value=0.0007  Score=61.03  Aligned_cols=50  Identities=24%  Similarity=0.458  Sum_probs=42.7

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD  260 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d  260 (310)
                      ..+.++.+.+...+|+  ++.|||++.+++..++++||++|++|+..++.++
T Consensus        64 ~~~~i~~i~~~~~~~l--~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~~~~~  113 (241)
T PRK13585         64 NAEAIEKIIEAVGVPV--QLGGGIRSAEDAASLLDLGVDRVILGTAAVENPE  113 (241)
T ss_pred             cHHHHHHHHHHcCCcE--EEcCCcCCHHHHHHHHHcCCCEEEEChHHhhChH
Confidence            4667777777667899  5699999999999999999999999999987543

>PRK11572 copper homeostasis protein CutC; Provisional

Probab=97.41  E-value=0.023  Score=51.57  Aligned_cols=165  Identities=20%  Similarity=0.239  Sum_probs=93.9

Q ss_pred             CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee------ccccc-------hHHHHH
Q 037779           43 VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK------ARIGH-------FVEAQI  109 (310)
Q Consensus        43 ~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k------d~i~~-------~~~~~~  109 (310)
                      .+++-+..+.++||+.| -|.   ... ..+|-  -++...++.+++.+++||.+.      +|.-+       ..+++.
T Consensus         9 ~s~~~a~~A~~~GAdRi-ELc---~~L-~~GGl--TPS~g~i~~~~~~~~ipv~vMIRPR~gdF~Ys~~E~~~M~~di~~   81 (248)
T PRK11572          9 YSMECALTAQQAGADRI-ELC---AAP-KEGGL--TPSLGVLKSVRERVTIPVHPIIRPRGGDFCYSDGEFAAMLEDIAT   81 (248)
T ss_pred             CCHHHHHHHHHcCCCEE-EEc---cCc-CCCCc--CCCHHHHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHHH
Confidence            45788999999999998 441   011 23343  466899999999999998763      33321       134566


Q ss_pred             HHHcCCCeeee---c-C-CCChhHHHHHHHhcCCCCcEEe-----ecCCHHHHH-HHHHhCCCEEEEecCCCCCchHHHH
Q 037779          110 LEAIGVDYVDE---S-E-VLTPADEENHINKHNFRVPFVC-----GCRNLGESL-RRIREGAAMIRTKGEAGTGNIVEAV  178 (310)
Q Consensus       110 ~~~aGad~v~~---~-~-~~~~~~~~~~~~~~~~~l~v~~-----~v~t~~ea~-~a~~~Gad~I~v~g~~~~~~~~~~~  178 (310)
                      +.++|+|++..   + + .+..+.+.+.+... .++++..     .+.++.++. ...++|.+-|-++|-..  +.    
T Consensus        82 ~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a-~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg~~--~a----  154 (248)
T PRK11572         82 VRELGFPGLVTGVLDVDGHVDMPRMRKIMAAA-GPLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQQQ--DA----  154 (248)
T ss_pred             HHHcCCCEEEEeeECCCCCcCHHHHHHHHHHh-cCCceEEechhhccCCHHHHHHHHHHcCCCEEECCCCCC--CH----
Confidence            77799999872   1 2 12333343333332 1233222     123444433 34566766555543211  10    


Q ss_pred             HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHh-cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEc
Q 037779          179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG  252 (310)
Q Consensus       179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~-~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VG  252 (310)
                                                  ....+.++.+.+ ... .+ +++.||| +++++.++.++|+..+=..
T Consensus       155 ----------------------------~~g~~~L~~lv~~a~~-~~-Im~GgGV-~~~Nv~~l~~tG~~~~H~s  198 (248)
T PRK11572        155 ----------------------------EQGLSLIMELIAASDG-PI-IMAGAGV-RLSNLHKFLDAGVREVHSS  198 (248)
T ss_pred             ----------------------------HHHHHHHHHHHHhcCC-CE-EEeCCCC-CHHHHHHHHHcCCCEEeeC
Confidence                                        012333344433 223 22 3789999 5999999988998877543

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=97.40  E-value=0.00072  Score=60.66  Aligned_cols=51  Identities=20%  Similarity=0.421  Sum_probs=44.1

Q ss_pred             CCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       207 ~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                      +.+.++++.+.+..++||  +++|||.+.+++.++++.|+++|++|++++..+
T Consensus        60 ~~n~~~~~~i~~~~~~pv--~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~~~  110 (232)
T TIGR03572        60 EPLFELISNLAEECFMPL--TVGGGIRSLEDAKKLLSLGADKVSINTAALENP  110 (232)
T ss_pred             CCCHHHHHHHHHhCCCCE--EEECCCCCHHHHHHHHHcCCCEEEEChhHhcCH
Confidence            346778888887778899  679999999999999999999999999999853

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=97.38  E-value=0.006  Score=53.89  Aligned_cols=114  Identities=18%  Similarity=0.276  Sum_probs=80.0

Q ss_pred             cceEeeccccc-hHHHHHHHHcCCCeeeec-CCCChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEecCC
Q 037779           93 IPVMAKARIGH-FVEAQILEAIGVDYVDES-EVLTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTKGEA  169 (310)
Q Consensus        93 lPv~~kd~i~~-~~~~~~~~~aGad~v~~~-~~~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~g~~  169 (310)
                      +||++.+.... ...++.+.+.|.+.+-++ ......+.++.++++.+++.+.++ +.|.++++.+.++|++|+..  +.
T Consensus        11 iaVlr~~~~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fivs--P~   88 (204)
T TIGR01182        11 VPVIRIDDVDDALPLAKALIEGGLRVLEVTLRTPVALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFIVS--PG   88 (204)
T ss_pred             EEEEecCCHHHHHHHHHHHHHcCCCEEEEeCCCccHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEC--CC
Confidence            56655543332 245678888999998644 223455667777766667888885 88999999999999999853  21


Q ss_pred             CCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEE
Q 037779          170 GTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGV  249 (310)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV  249 (310)
                      .                                      +.++++...+ .++|+  +  =|+.||.++.+++++|++.|
T Consensus        89 ~--------------------------------------~~~v~~~~~~-~~i~~--i--PG~~TptEi~~A~~~Ga~~v  125 (204)
T TIGR01182        89 L--------------------------------------TPELAKHAQD-HGIPI--I--PGVATPSEIMLALELGITAL  125 (204)
T ss_pred             C--------------------------------------CHHHHHHHHH-cCCcE--E--CCCCCHHHHHHHHHCCCCEE
Confidence            1                                      2344555444 36788  4  47789999999999999988


Q ss_pred             EE
Q 037779          250 FV  251 (310)
Q Consensus       250 ~V  251 (310)
                      =+
T Consensus       126 Kl  127 (204)
T TIGR01182       126 KL  127 (204)
T ss_pred             EE
Confidence            54

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]

Probab=97.37  E-value=0.0011  Score=58.90  Aligned_cols=50  Identities=24%  Similarity=0.399  Sum_probs=43.6

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD  260 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d  260 (310)
                      ..++++++.+...+|+  .+.|||.+.+|+++++.+|||-|.+.|+-...++
T Consensus        62 ~~~vv~r~A~~vfiPl--tVGGGI~s~eD~~~ll~aGADKVSINsaAv~~p~  111 (256)
T COG0107          62 MLDVVERVAEQVFIPL--TVGGGIRSVEDARKLLRAGADKVSINSAAVKDPE  111 (256)
T ss_pred             HHHHHHHHHhhceeee--EecCCcCCHHHHHHHHHcCCCeeeeChhHhcChH
Confidence            4677888888788999  5699999999999999999999999998777544

>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

Probab=97.37  E-value=0.0007  Score=61.58  Aligned_cols=71  Identities=21%  Similarity=0.235  Sum_probs=51.9

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChhhHHhhhhcc
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGL  288 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (310)
                      ..++++.+.+..++||  .+.|||.+ +++.+++++||+.|++||+++..+               .-+|..+.+++++|
T Consensus        64 n~~~i~~i~~~~~~~v--~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~~~---------------~i~~~~~~~i~~~f  125 (253)
T TIGR02129        64 NDDAAKEALHAYPGGL--QVGGGIND-TNAQEWLDEGASHVIVTSWLFTKG---------------KFDLKRLKEIVSLV  125 (253)
T ss_pred             cHHHHHHHHHhCCCCE--EEeCCcCH-HHHHHHHHcCCCEEEECcHHHhCC---------------CCCHHHHHHHHHHh
Confidence            4677777777777899  56999985 999999999999999999888732               12344555555555


Q ss_pred             C--Cceecccc
Q 037779          289 G--EAMVGIDL  297 (310)
Q Consensus       289 ~--~~~~~~~~  297 (310)
                      |  ...++||.
T Consensus       126 G~~~IvvsiD~  136 (253)
T TIGR02129       126 GKDRLIVDLSC  136 (253)
T ss_pred             CCCCEEEEEEE
Confidence            3  44555554

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.

>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]

Probab=97.35  E-value=0.0029  Score=57.96  Aligned_cols=96  Identities=16%  Similarity=0.115  Sum_probs=67.7

Q ss_pred             ChhHHHHHHHhcCCC-CcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779          125 TPADEENHINKHNFR-VPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA  203 (310)
Q Consensus       125 ~~~~~~~~~~~~~~~-l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  203 (310)
                      +..+.++.+++..+. ..+-+++.|++|+++|+++|||+|.....                          +++.+    
T Consensus       173 ~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~agaDiImLDNm--------------------------~~e~~----  222 (280)
T COG0157         173 SITEAVRRARAAAPFTKKIEVEVESLEEAEEALEAGADIIMLDNM--------------------------SPEEL----  222 (280)
T ss_pred             cHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEecCC--------------------------CHHHH----
Confidence            466777777774444 45889999999999999999999998521                          11111    


Q ss_pred             ccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          204 KNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       204 ~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                            .+.++.+.  ..-.+++=++||| |++++..+.+.|+|-+.+|.-.+..+
T Consensus       223 ------~~av~~l~--~~~~~~lEaSGgI-t~~ni~~yA~tGVD~IS~galths~~  269 (280)
T COG0157         223 ------KEAVKLLG--LAGRALLEASGGI-TLENIREYAETGVDVISVGALTHSAP  269 (280)
T ss_pred             ------HHHHHHhc--cCCceEEEEeCCC-CHHHHHHHhhcCCCEEEeCccccCCc
Confidence                  12222221  1114444679999 69999999999999999998766654

>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1

Probab=97.35  E-value=0.0018  Score=57.55  Aligned_cols=137  Identities=19%  Similarity=0.306  Sum_probs=76.8

Q ss_pred             HHHHHHHhcCCCCcEEeecC--CHH-----HHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhccee---cccccCch
Q 037779          128 DEENHINKHNFRVPFVCGCR--NLG-----ESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIR---VLRNMDDD  197 (310)
Q Consensus       128 ~~~~~~~~~~~~l~v~~~v~--t~~-----ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~d  197 (310)
                      ++++.+++.+  ..++++++  +.-     .++.+.+.|+|++.+|+..+...+..+++.+++.+....   .++.....
T Consensus        40 ~~v~~l~~~~--~~v~lD~K~~Dig~t~~~~~~~~~~~gad~vTvh~~~g~~~l~~~~~~~~~~~~~v~~v~~lss~~~~  117 (213)
T TIGR01740        40 KIIDELAKLN--KLIFLDLKFADIPNTVKLQYESKIKQGADMVNVHGVAGSESVEAAKEAASEGGRGLLAVTELTSMGSL  117 (213)
T ss_pred             HHHHHHHHcC--CCEEEEEeecchHHHHHHHHHHHHhcCCCEEEEcCCCCHHHHHHHHHHhhcCCCeEEEEEcCCCCChh
Confidence            4455555532  36667763  221     234456789999999976554445556666555443311   22222110


Q ss_pred             --------hHHhhhc--------cCCCcHHHHHHHHhcCCCCEEEEccCCCCCHH--H--------HHHHHHcCCCEEEE
Q 037779          198 --------EVFTFAK--------NIAAPYDLVMQTKQLGRLPVVHFAAGGVATPA--D--------AAMMMQLGCDGVFV  251 (310)
Q Consensus       198 --------~~~~~~~--------~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~--d--------i~~~~~~GadgV~V  251 (310)
                              .+++.++        +.....+.+..+++... ..+ +..+||+-..  .        +..+.+.|+|-+++
T Consensus       118 ~~~~~~~~~v~~~a~~~~~~g~~g~v~~~~~~~~ir~~~~-~~~-~vtPGI~~~g~~~~dq~~~~~~~~~~~~Gad~iVv  195 (213)
T TIGR01740       118 DYGEDTMEKVLEYAKEAKAFGLDGPVCSAEEAKEIRKFTG-DFL-ILTPGIRLQSKGADDQQRVVTLEDAKEAGADVIIV  195 (213)
T ss_pred             hhCcCHHHHHHHHHHHhhhcCCeEEEeCHHHHHHHHHhcC-Cce-EEeCCcCCCCCCcCCccccCCHHHHHHcCCCEEEE
Confidence                    1111111        11112344555555432 222 3469996321  2        27788999999999


Q ss_pred             ccccccCCCHHHHHHHH
Q 037779          252 GSGVFKSGDPVRRARAI  268 (310)
Q Consensus       252 Gsai~~~~dp~~~~~~~  268 (310)
                      ||+|++++||.+.++++
T Consensus       196 Gr~I~~~~d~~~~~~~~  212 (213)
T TIGR01740       196 GRGIYAAEDPVEAAKRI  212 (213)
T ss_pred             ChhhcCCCCHHHHHHHh
Confidence            99999999999887765

This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.33  E-value=0.006  Score=58.69  Aligned_cols=40  Identities=35%  Similarity=0.519  Sum_probs=31.7

Q ss_pred             HHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccc
Q 037779          211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG  254 (310)
Q Consensus       211 ~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsa  254 (310)
                      .+.+.+++ .++||  |+ |+|.|++++.+++++|||+|++|..
T Consensus       178 ~i~~~ik~-~~ipV--Ia-G~V~t~e~A~~l~~aGAD~V~VG~G  217 (368)
T PRK08649        178 NLKEFIYE-LDVPV--IV-GGCVTYTTALHLMRTGAAGVLVGIG  217 (368)
T ss_pred             HHHHHHHH-CCCCE--EE-eCCCCHHHHHHHHHcCCCEEEECCC
Confidence            34444444 57899  43 8999999999999999999999953

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.33  E-value=0.0061  Score=53.71  Aligned_cols=102  Identities=16%  Similarity=0.196  Sum_probs=74.5

Q ss_pred             HHHHHHHHcCCCeeeec-CCCChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHH
Q 037779          105 VEAQILEAIGVDYVDES-EVLTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVR  182 (310)
Q Consensus       105 ~~~~~~~~aGad~v~~~-~~~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~  182 (310)
                      ..++.+.+.|...+-++ ......+.++.++++.+++.+.++ +.|.++++.+.++|++|+..-      +         
T Consensus        20 ~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP------~---------   84 (201)
T PRK06015         20 PLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSP------G---------   84 (201)
T ss_pred             HHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECC------C---------
Confidence            34577888999988644 222345666667665567888885 889999999999999998741      1         


Q ss_pred             HhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEE
Q 037779          183 SVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFV  251 (310)
Q Consensus       183 ~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~V  251 (310)
                                               .+.++++...+ .++|+  +  =|+.||.++..++++|++.|=+
T Consensus        85 -------------------------~~~~vi~~a~~-~~i~~--i--PG~~TptEi~~A~~~Ga~~vK~  123 (201)
T PRK06015         85 -------------------------TTQELLAAAND-SDVPL--L--PGAATPSEVMALREEGYTVLKF  123 (201)
T ss_pred             -------------------------CCHHHHHHHHH-cCCCE--e--CCCCCHHHHHHHHHCCCCEEEE
Confidence                                     13445555554 46788  4  6778999999999999998854

>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF

Probab=97.30  E-value=0.025  Score=49.86  Aligned_cols=163  Identities=22%  Similarity=0.309  Sum_probs=84.0

Q ss_pred             CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeec------cccc-------hHHHHH
Q 037779           43 VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKA------RIGH-------FVEAQI  109 (310)
Q Consensus        43 ~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd------~i~~-------~~~~~~  109 (310)
                      .+++-+..+.++||+.| -|.   ... ..+|-  -+++..++.+++.+++|+.+..      |.-+       .+++..
T Consensus         8 ~s~~~a~~A~~~GAdRi-ELc---~~l-~~GGl--TPS~g~i~~~~~~~~ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~   80 (201)
T PF03932_consen    8 ESLEDALAAEAGGADRI-ELC---SNL-EVGGL--TPSLGLIRQAREAVDIPVHVMIRPRGGDFVYSDEEIEIMKEDIRM   80 (201)
T ss_dssp             SSHHHHHHHHHTT-SEE-EEE---BTG-GGT-B-----HHHHHHHHHHTTSEEEEE--SSSS-S---HHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCEE-EEC---CCc-cCCCc--CcCHHHHHHHHhhcCCceEEEECCCCCCccCCHHHHHHHHHHHHH
Confidence            45788999999999998 441   111 22343  4668899999999999987742      2211       135566


Q ss_pred             HHHcCCCeeee---c-CC-CChhHHHHHHHhcCCCCcEEe-----ecCCHHHHH-HHHHhCCCEEEEecCCCCCchHHHH
Q 037779          110 LEAIGVDYVDE---S-EV-LTPADEENHINKHNFRVPFVC-----GCRNLGESL-RRIREGAAMIRTKGEAGTGNIVEAV  178 (310)
Q Consensus       110 ~~~aGad~v~~---~-~~-~~~~~~~~~~~~~~~~l~v~~-----~v~t~~ea~-~a~~~Gad~I~v~g~~~~~~~~~~~  178 (310)
                      +.++|+|.+..   + +. +..+.+.+.+...+ ++++..     .+.++.++. ...++|.+-|-++|-..+       
T Consensus        81 ~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~-~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSGg~~~-------  152 (201)
T PF03932_consen   81 LRELGADGFVFGALTEDGEIDEEALEELIEAAG-GMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSGGAPT-------  152 (201)
T ss_dssp             HHHTT-SEEEE--BETTSSB-HHHHHHHHHHHT-TSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEESTTSSS-------
T ss_pred             HHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcC-CCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCCCCCC-------
Confidence            77799999872   1 11 22233333333221 333322     123444443 333567666555432110       


Q ss_pred             HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHh-c-CCCCEEEEccCCCCCHHHHHHHHH-cCCCEEE
Q 037779          179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQ-L-GRLPVVHFAAGGVATPADAAMMMQ-LGCDGVF  250 (310)
Q Consensus       179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~-~-~~iPVv~ia~GGI~t~~di~~~~~-~GadgV~  250 (310)
                                                 .....+.++.+.+ . .++.|  ++.||| +++++..+.+ +|+..+=
T Consensus       153 ---------------------------a~~g~~~L~~lv~~a~~~i~I--m~GgGv-~~~nv~~l~~~tg~~~~H  197 (201)
T PF03932_consen  153 ---------------------------ALEGIENLKELVEQAKGRIEI--MPGGGV-RAENVPELVEETGVREIH  197 (201)
T ss_dssp             ---------------------------TTTCHHHHHHHHHHHTTSSEE--EEESS---TTTHHHHHHHHT-SEEE
T ss_pred             ---------------------------HHHHHHHHHHHHHHcCCCcEE--EecCCC-CHHHHHHHHHhhCCeEEe
Confidence                                       1112333343333 2 34555  679999 5999999997 8987653

A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.

>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)

Probab=97.29  E-value=0.0036  Score=58.47  Aligned_cols=101  Identities=14%  Similarity=0.072  Sum_probs=66.7

Q ss_pred             ChhHHHHHHHh----cCCCCcEEeecCCHHHHHHHHH------hCCCEEEEecCCCCCchHHHHHHHHHhhcceeccccc
Q 037779          125 TPADEENHINK----HNFRVPFVCGCRNLGESLRRIR------EGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNM  194 (310)
Q Consensus       125 ~~~~~~~~~~~----~~~~l~v~~~v~t~~ea~~a~~------~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~  194 (310)
                      +..+.++.+++    ..+...+.+++.|.+|+..+++      +|+|+|.......++                      
T Consensus       185 ~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~----------------------  242 (308)
T PLN02716        185 GITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPL----------------------  242 (308)
T ss_pred             CHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccc----------------------
Confidence            34555555554    2244679999999999999999      999999875221111                      


Q ss_pred             CchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          195 DDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       195 ~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                        +.+      -..+.++.+.++.. ...|+  -++||| |++++.++.++|+|.+.+|+-.+..
T Consensus       243 --~~~------~~~~e~l~~av~~~~~~~~l--EaSGGI-t~~ni~~yA~tGVD~Is~Galthsa  296 (308)
T PLN02716        243 --ENG------DVDVSMLKEAVELINGRFET--EASGNV-TLDTVHKIGQTGVTYISSGALTHSV  296 (308)
T ss_pred             --ccc------CCCHHHHHHHHHhhCCCceE--EEECCC-CHHHHHHHHHcCCCEEEeCccccCC
Confidence              000      01122233323221 23555  689999 6999999999999999999966543

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.28  E-value=0.012  Score=52.40  Aligned_cols=123  Identities=20%  Similarity=0.286  Sum_probs=84.2

Q ss_pred             HHHHHhhcCcceEeeccccc-hHHHHHHHHcCCCeeeec-CCCChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCC
Q 037779           84 IKQIKSSVTIPVMAKARIGH-FVEAQILEAIGVDYVDES-EVLTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGA  160 (310)
Q Consensus        84 i~~i~~~~~lPv~~kd~i~~-~~~~~~~~~aGad~v~~~-~~~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Ga  160 (310)
                      ++.+.+.-=+||++.+-... ...++.+.+.|.+.+-++ ......+.++.+++.++++.++++ +.|.++++.+.++||
T Consensus         9 ~~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEitl~~~~~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA   88 (212)
T PRK05718          9 EEILRAGPVVPVIVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGA   88 (212)
T ss_pred             HHHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCC
Confidence            34444433467766544432 234577788899998644 222344566677766677888886 778899999999999


Q ss_pred             CEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHH
Q 037779          161 AMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM  240 (310)
Q Consensus       161 d~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~  240 (310)
                      +|+..-+.                                        +.++++...+ ..+|.  +  =|+.||.++.+
T Consensus        89 ~FivsP~~----------------------------------------~~~vi~~a~~-~~i~~--i--PG~~TptEi~~  123 (212)
T PRK05718         89 QFIVSPGL----------------------------------------TPPLLKAAQE-GPIPL--I--PGVSTPSELML  123 (212)
T ss_pred             CEEECCCC----------------------------------------CHHHHHHHHH-cCCCE--e--CCCCCHHHHHH
Confidence            99875211                                        1244444444 45777  3  67889999999


Q ss_pred             HHHcCCCEEEE
Q 037779          241 MMQLGCDGVFV  251 (310)
Q Consensus       241 ~~~~GadgV~V  251 (310)
                      ++++|++.|-+
T Consensus       124 a~~~Ga~~vKl  134 (212)
T PRK05718        124 GMELGLRTFKF  134 (212)
T ss_pred             HHHCCCCEEEE
Confidence            99999999988

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=97.28  E-value=0.0012  Score=59.78  Aligned_cols=51  Identities=16%  Similarity=0.311  Sum_probs=44.6

Q ss_pred             CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779          208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD  260 (310)
Q Consensus       208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d  260 (310)
                      ...++++.+.+...+||  .+.|||.|.+++.+++.+||+.+.+||+.++.++
T Consensus        62 ~n~~~i~~i~~~~~~pv--~vgGGirs~edv~~~l~~Ga~kvviGs~~l~~p~  112 (241)
T PRK14024         62 SNRELLAEVVGKLDVKV--ELSGGIRDDESLEAALATGCARVNIGTAALENPE  112 (241)
T ss_pred             ccHHHHHHHHHHcCCCE--EEcCCCCCHHHHHHHHHCCCCEEEECchHhCCHH
Confidence            35678888888778999  5699999999999999999999999999998544

>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5

Probab=97.21  E-value=0.0071  Score=58.09  Aligned_cols=55  Identities=27%  Similarity=0.306  Sum_probs=44.5

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCC------------------CCHHHHHHHHHcC-CCEEEEccccccCCCHHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGV------------------ATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRA  265 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI------------------~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~  265 (310)
                      .+.+...+++..++||  ++.|||                  .|++++.++++.| +|.|++|++++..++....+
T Consensus       268 ~~~~~~~~k~~~~~pv--~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~  341 (361)
T cd04747         268 ELNLAGWTKKLTGLPT--ITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSDPAWVAKV  341 (361)
T ss_pred             chhHHHHHHHHcCCCE--EEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHHHHH
Confidence            3556677777778999  568999                  5899999999875 99999999999977765443

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=97.20  E-value=0.0023  Score=57.71  Aligned_cols=49  Identities=18%  Similarity=0.300  Sum_probs=42.6

Q ss_pred             CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      ...++++.+.+...+|+  .+.|||.+.+++.+++..||+-|++||..+..
T Consensus        65 ~n~~~i~~i~~~~~~~v--~vgGGir~~edv~~~l~~Ga~~viigt~~~~~  113 (233)
T cd04723          65 DNDEAIRELAAAWPLGL--WVDGGIRSLENAQEWLKRGASRVIVGTETLPS  113 (233)
T ss_pred             ccHHHHHHHHHhCCCCE--EEecCcCCHHHHHHHHHcCCCeEEEcceeccc
Confidence            35678888887667898  46999999999999999999999999988875

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.19  E-value=0.015  Score=51.97  Aligned_cols=126  Identities=15%  Similarity=0.119  Sum_probs=83.2

Q ss_pred             hHHHHHHHhhcCcceEeeccccc-hHHHHHHHHcCCCeeeecC-CCChhHHHHHHH----hcCCCCcEEee-cCCHHHHH
Q 037779           81 PQLIKQIKSSVTIPVMAKARIGH-FVEAQILEAIGVDYVDESE-VLTPADEENHIN----KHNFRVPFVCG-CRNLGESL  153 (310)
Q Consensus        81 ~~~i~~i~~~~~lPv~~kd~i~~-~~~~~~~~~aGad~v~~~~-~~~~~~~~~~~~----~~~~~l~v~~~-v~t~~ea~  153 (310)
                      .+.++.+.+.-=+||++.+...+ ...++.+.+.|...+-++- .....+.++.+.    ++.+++.++++ +.|.++++
T Consensus         6 ~~~~~~l~~~~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~   85 (222)
T PRK07114          6 IAVLTAMKATGMVPVFYHADVEVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAA   85 (222)
T ss_pred             HHHHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHH
Confidence            34555555443467766544432 2345778889999886442 112334444443    34456888885 88999999


Q ss_pred             HHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCC
Q 037779          154 RRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVA  233 (310)
Q Consensus       154 ~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~  233 (310)
                      .+.++|++|+..-+                                        .+.++++...+ .++|+  +  =|+.
T Consensus        86 ~a~~aGA~FiVsP~----------------------------------------~~~~v~~~~~~-~~i~~--i--PG~~  120 (222)
T PRK07114         86 LYIQLGANFIVTPL----------------------------------------FNPDIAKVCNR-RKVPY--S--PGCG  120 (222)
T ss_pred             HHHHcCCCEEECCC----------------------------------------CCHHHHHHHHH-cCCCE--e--CCCC
Confidence            99999999987411                                        12345555554 46788  4  6788


Q ss_pred             CHHHHHHHHHcCCCEEEE
Q 037779          234 TPADAAMMMQLGCDGVFV  251 (310)
Q Consensus       234 t~~di~~~~~~GadgV~V  251 (310)
                      ||.++.+++++|++.|=+
T Consensus       121 TpsEi~~A~~~Ga~~vKl  138 (222)
T PRK07114        121 SLSEIGYAEELGCEIVKL  138 (222)
T ss_pred             CHHHHHHHHHCCCCEEEE
Confidence            999999999999998865

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage

Probab=97.18  E-value=0.089  Score=47.74  Aligned_cols=174  Identities=20%  Similarity=0.216  Sum_probs=100.2

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCC--CCCCC----hHHHHHHHhhcCcceEeecccc--ch----HHHH
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGV--ARMSD----PQLIKQIKSSVTIPVMAKARIG--HF----VEAQ  108 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~--~~~~~----~~~i~~i~~~~~lPv~~kd~i~--~~----~~~~  108 (310)
                      .+.|+-.|+.++++|++++..--   .-.....|.  ...-+    ...++.|.+.+++|+++..-.+  ..    ..+.
T Consensus        15 ~~~D~~sA~~~e~~G~~ai~~s~---~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~   91 (243)
T cd00377          15 GAWDALSARLAERAGFKAIYTSG---AGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVR   91 (243)
T ss_pred             CCCCHHHHHHHHHcCCCEEEecc---HHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHH
Confidence            45567889999999999972210   000011111  00111    3345667777899998853332  21    2345


Q ss_pred             HHHHcCCCeeeec--------------CCCChhHHHHHHHh-----cC-CCCcEEee-----c--CCHHHH----HHHHH
Q 037779          109 ILEAIGVDYVDES--------------EVLTPADEENHINK-----HN-FRVPFVCG-----C--RNLGES----LRRIR  157 (310)
Q Consensus       109 ~~~~aGad~v~~~--------------~~~~~~~~~~~~~~-----~~-~~l~v~~~-----v--~t~~ea----~~a~~  157 (310)
                      .+.++|+++|.+-              ..+++++..+.++.     .+ .++.+++.     .  ...+|+    +.+.+
T Consensus        92 ~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~  171 (243)
T cd00377          92 ELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAE  171 (243)
T ss_pred             HHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHH
Confidence            6677999999851              12345555554433     11 24555555     2  234443    33446


Q ss_pred             hCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHH
Q 037779          158 EGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPAD  237 (310)
Q Consensus       158 ~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~d  237 (310)
                      +|||.+.+.++.                                       +.+.++.+.+..+.|+++....+-. .-.
T Consensus       172 AGAD~v~v~~~~---------------------------------------~~~~~~~~~~~~~~Pl~~~~~~~~~-~~~  211 (243)
T cd00377         172 AGADGIFVEGLK---------------------------------------DPEEIRAFAEAPDVPLNVNMTPGGN-LLT  211 (243)
T ss_pred             cCCCEEEeCCCC---------------------------------------CHHHHHHHHhcCCCCEEEEecCCCC-CCC
Confidence            788887775320                                       2344555666567898765444321 246


Q ss_pred             HHHHHHcCCCEEEEcccccc
Q 037779          238 AAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       238 i~~~~~~GadgV~VGsai~~  257 (310)
                      ..++.++|++-|..|..+++
T Consensus       212 ~~~l~~lG~~~v~~~~~~~~  231 (243)
T cd00377         212 VAELAELGVRRVSYGLALLR  231 (243)
T ss_pred             HHHHHHCCCeEEEEChHHHH
Confidence            77788899999999998776

Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=97.18  E-value=0.015  Score=50.47  Aligned_cols=109  Identities=22%  Similarity=0.265  Sum_probs=69.8

Q ss_pred             HHHHHHHHHcCCcEEEecccccch-hhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-C
Q 037779           45 PEQARIAEEAGACAVMALERVPAD-IRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-E  122 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d-~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~  122 (310)
                      .+.++.+.++|++.| -+- . |. .|.      ....+++++|++.. .+++..  +.+.++...+.++|+|.|-.+ .
T Consensus        54 ~~ev~~l~~aGadII-AlD-a-T~R~Rp------~~l~~li~~i~~~~-~l~MAD--ist~ee~~~A~~~G~D~I~TTLs  121 (192)
T PF04131_consen   54 LKEVDALAEAGADII-ALD-A-TDRPRP------ETLEELIREIKEKY-QLVMAD--ISTLEEAINAAELGFDIIGTTLS  121 (192)
T ss_dssp             HHHHHHHHHCT-SEE-EEE---SSSS-S------S-HHHHHHHHHHCT-SEEEEE---SSHHHHHHHHHTT-SEEE-TTT
T ss_pred             HHHHHHHHHcCCCEE-EEe-c-CCCCCC------cCHHHHHHHHHHhC-cEEeee--cCCHHHHHHHHHcCCCEEEcccc
Confidence            478999999999987 331 0 11 111      12266788999887 555544  456688889999999998621 1


Q ss_pred             C-------C-ChhHHHHHHHhcCCCCcEEee--cCCHHHHHHHHHhCCCEEEEec
Q 037779          123 V-------L-TPADEENHINKHNFRVPFVCG--CRNLGESLRRIREGAAMIRTKG  167 (310)
Q Consensus       123 ~-------~-~~~~~~~~~~~~~~~l~v~~~--v~t~~ea~~a~~~Gad~I~v~g  167 (310)
                      .       . +..++++.+.+.  +.+++++  ++|++++.+++++||+.|.|.+
T Consensus       122 GYT~~t~~~~pD~~lv~~l~~~--~~pvIaEGri~tpe~a~~al~~GA~aVVVGs  174 (192)
T PF04131_consen  122 GYTPYTKGDGPDFELVRELVQA--DVPVIAEGRIHTPEQAAKALELGAHAVVVGS  174 (192)
T ss_dssp             TSSTTSTTSSHHHHHHHHHHHT--TSEEEEESS--SHHHHHHHHHTT-SEEEE-H
T ss_pred             cCCCCCCCCCCCHHHHHHHHhC--CCcEeecCCCCCHHHHHHHHhcCCeEEEECc
Confidence            1       1 122566666553  6888886  8999999999999999998863

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=97.17  E-value=0.0076  Score=56.04  Aligned_cols=117  Identities=25%  Similarity=0.356  Sum_probs=75.9

Q ss_pred             HHHHHHHHcCCcEEEecc-cccchhhhcCCCCCCCChHH----HHHHHhhcCcceEeeccccc---hHHHHHHHHcCCCe
Q 037779           46 EQARIAEEAGACAVMALE-RVPADIRAQGGVARMSDPQL----IKQIKSSVTIPVMAKARIGH---FVEAQILEAIGVDY  117 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~~d~r~~~G~~~~~~~~~----i~~i~~~~~lPv~~kd~i~~---~~~~~~~~~aGad~  117 (310)
                      +.|+.+.++|+++| .+| .+|.-.+  .|.....+++.    ++++++.+++||++|.....   .+.++.+.++|+|.
T Consensus       106 ~~a~~~~~~G~d~i-ElN~~cP~~~~--~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~  182 (296)
T cd04740         106 EVAEKLADAGADAI-ELNISCPNVKG--GGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPNVTDIVEIARAAEEAGADG  182 (296)
T ss_pred             HHHHHHHHcCCCEE-EEECCCCCCCC--CcccccCCHHHHHHHHHHHHhccCCCEEEEeCCCchhHHHHHHHHHHcCCCE
Confidence            67888999999998 787 4443211  13323334554    56677777999999954432   13456788899998


Q ss_pred             eeec--------CC-------------CC-------hhHHHHHHHhcCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779          118 VDES--------EV-------------LT-------PADEENHINKHNFRVPFVC--GCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       118 v~~~--------~~-------------~~-------~~~~~~~~~~~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                      +...        +.             ++       ..+.++.+++. .+++++.  +++|.+++.++++.|||.|.+.
T Consensus       183 i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~-~~ipii~~GGI~~~~da~~~l~~GAd~V~ig  260 (296)
T cd04740         183 LTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKA-VEIPIIGVGGIASGEDALEFLMAGASAVQVG  260 (296)
T ss_pred             EEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHh-cCCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence            7521        00             00       01344444442 3566655  4899999999999999999885

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=97.16  E-value=0.0059  Score=53.60  Aligned_cols=114  Identities=17%  Similarity=0.181  Sum_probs=74.8

Q ss_pred             cceEeeccccch-HHHHHHHHcCCCeeeec-CCCChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEecCC
Q 037779           93 IPVMAKARIGHF-VEAQILEAIGVDYVDES-EVLTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTKGEA  169 (310)
Q Consensus        93 lPv~~kd~i~~~-~~~~~~~~aGad~v~~~-~~~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~g~~  169 (310)
                      +||+........ ..++.+.+.|...+-++ ......+.++.++++.+++.+.++ +.|.++++.+.++||+|+..-   
T Consensus        11 iaVir~~~~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivSP---   87 (196)
T PF01081_consen   11 IAVIRGDDPEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVSP---   87 (196)
T ss_dssp             EEEETTSSGGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEES---
T ss_pred             EEEEEcCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEECC---
Confidence            566655444322 45678888999987644 222345677767766678889885 899999999999999998741   


Q ss_pred             CCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEE
Q 037779          170 GTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGV  249 (310)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV  249 (310)
                         +                                  .+.++++...+ .++|+  +  =|+.||.++.+++++|++.|
T Consensus        88 ---~----------------------------------~~~~v~~~~~~-~~i~~--i--PG~~TptEi~~A~~~G~~~v  125 (196)
T PF01081_consen   88 ---G----------------------------------FDPEVIEYARE-YGIPY--I--PGVMTPTEIMQALEAGADIV  125 (196)
T ss_dssp             ---S------------------------------------HHHHHHHHH-HTSEE--E--EEESSHHHHHHHHHTT-SEE
T ss_pred             ---C----------------------------------CCHHHHHHHHH-cCCcc--c--CCcCCHHHHHHHHHCCCCEE
Confidence               1                                  12345555554 35787  3  57779999999999999988


Q ss_pred             EE
Q 037779          250 FV  251 (310)
Q Consensus       250 ~V  251 (310)
                      =+
T Consensus       126 K~  127 (196)
T PF01081_consen  126 KL  127 (196)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=97.16  E-value=0.0025  Score=64.20  Aligned_cols=84  Identities=17%  Similarity=0.220  Sum_probs=66.5

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCH-----------HHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCC
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATP-----------ADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSD  277 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~-----------~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~  277 (310)
                      ..++++.+.+...+|+  -+.|||.|.           +++.+++++|||-|.+||+.++  ||+++.    .. -+..+
T Consensus       302 ~~~~i~~i~~~~~ip~--~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~--~~~~~~----~~-~~~~~  372 (538)
T PLN02617        302 MLEVLRRASENVFVPL--TVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVY--AAEEYI----AS-GVKTG  372 (538)
T ss_pred             HHHHHHHHHhhCCCCE--EEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHHh--Chhhhh----cc-ccccC
Confidence            3678888888788999  569999997           6699999999999999998888  444333    11 15567


Q ss_pred             hhhHHhhhhccCC--ceeccccccch
Q 037779          278 PDVLAEVSCGLGE--AMVGIDLNDVK  301 (310)
Q Consensus       278 ~~~~~~~~~~~~~--~~~~~~~~~~~  301 (310)
                      |..+.++++.||.  ..++||..+.+
T Consensus       373 p~~i~~~~~~fg~q~ivvsiD~k~~~  398 (538)
T PLN02617        373 KTSIEQISRVYGNQAVVVSIDPRRVY  398 (538)
T ss_pred             HHHHHHHHHHcCCceEEEEEecCcCc
Confidence            9999999999965  58888876653

>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate

Probab=97.15  E-value=0.0044  Score=54.40  Aligned_cols=182  Identities=23%  Similarity=0.273  Sum_probs=97.1

Q ss_pred             CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc-chHH-HHHHHHcCCCeee
Q 037779           42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG-HFVE-AQILEAIGVDYVD  119 (310)
Q Consensus        42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~-~~~~-~~~~~~aGad~v~  119 (310)
                      ..+++.++.+.+.|++.+-.. ..|.       |-+.-+++..+++.+.+. |..+..+.+ ..+. .+.+..++.|.|.
T Consensus         6 i~~~~da~~~~~~g~d~~Gfi-~~~~-------S~R~v~~~~a~~l~~~~~-~~~VgVf~~~~~~~I~~~~~~~~ld~vQ   76 (197)
T PF00697_consen    6 ITRPEDARLAAELGADYLGFI-FYPK-------SPRYVSPDQARELVSAVP-PKIVGVFVNQSPEEILEIVEELGLDVVQ   76 (197)
T ss_dssp             --SHHHHHHHHHHTSSEEEEE---TT-------CTTB--HHHHHHHHCCSS-SSEEEEESSS-HHHHHHHHHHCTESEEE
T ss_pred             CCcHHHHHHHHHcCCCEEeee-cCCC-------CCCccCHHHHHHHHHhcC-CCEEEEEcCCCHHHHHHHHHHcCCCEEE
Confidence            456889999999999987333 1122       223344788888887766 334555554 2233 3566779999987


Q ss_pred             ecCCCChhHHHHHHHhcCCCCcEEeecCC-HHHHHHHHHhC-CCEEEEecCC-CCCchHHHHHHHHHhhcceecccccCc
Q 037779          120 ESEVLTPADEENHINKHNFRVPFVCGCRN-LGESLRRIREG-AAMIRTKGEA-GTGNIVEAVRHVRSVMGDIRVLRNMDD  196 (310)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~l~v~~~v~t-~~ea~~a~~~G-ad~I~v~g~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~  196 (310)
                      .+-.. +.++.+.++. +..+.-...+.. .+....+.... .|++-+.+.. ++|.                       
T Consensus        77 LHG~e-~~e~~~~l~~-~~~vi~~~~v~~~~~~~~~~~~~~~~d~~LlD~~~GgtG~-----------------------  131 (197)
T PF00697_consen   77 LHGDE-SPEYIKLLRA-GLPVIKAIHVDKDIDLLDYLERYESVDYFLLDSGSGGTGK-----------------------  131 (197)
T ss_dssp             E-SGG--HHHHHHHHT-TSEEEEEEEESSCHSCCHHCHCSTT-SEEEEESSSTSSSS-----------------------
T ss_pred             ECCCC-CHHHHHHhhc-CceEEEEEEeCCccchHHHHHhcccccEEeEccCCCcCCc-----------------------
Confidence            44332 5566666653 222111112221 11122222222 2676665332 2331                       


Q ss_pred             hhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCCC--HHHHHHHHHH
Q 037779          197 DEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGD--PVRRARAIVQ  270 (310)
Q Consensus       197 d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~d--p~~~~~~~~~  270 (310)
                                .-+|++++.+.+. .+.|+  +.+||| +|+++.++++ .++.||=|.|.+=.++-  -...+++|.+
T Consensus       132 ----------~~dw~~~~~~~~~~~~~p~--iLAGGl-~p~NV~~ai~~~~p~gvDvsSGvE~~pG~KD~~ki~~fv~  196 (197)
T PF00697_consen  132 ----------TFDWSLLKKIVESYSPKPV--ILAGGL-NPENVREAIRQVRPYGVDVSSGVETSPGVKDPEKIKAFVE  196 (197)
T ss_dssp             -------------GGGGCCCHHT-GTSTE--EEESS---TTTHHHHHHHC--SEEEESGGGEEETTEE-HHHHHHHHH
T ss_pred             ----------ccCHHHhhhhhhhcccCcE--EEEcCC-ChHHHHHHHHhcCceEEEeCCccccCCCCCCHHHHHHHHh
Confidence                      1244454444442 25799  458999 5999999998 79999999999987631  1345555554

In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.

>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]

Probab=97.14  E-value=0.0059  Score=55.37  Aligned_cols=47  Identities=28%  Similarity=0.476  Sum_probs=38.6

Q ss_pred             CCCEEEEccCCCCCHHHHHHHH-HcCCCEEEEccccccCCCHHHHHHHHHH
Q 037779          221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPVRRARAIVQ  270 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~-~~GadgV~VGsai~~~~dp~~~~~~~~~  270 (310)
                      .+||  ...|+|+ ++++.+++ +.++||++||++-++++|+...++.+..
T Consensus       202 ~v~I--lYGGSV~-~~N~~e~~~~~~idG~LVGgAslka~~f~~ii~~~~~  249 (251)
T COG0149         202 KVRI--LYGGSVK-PGNAAELAAQPDIDGALVGGASLKADDFLAILEALAK  249 (251)
T ss_pred             CeEE--EEeCCcC-hhHHHHHhcCCCCCeEEEcceeecchhHHHHHHHHhh
Confidence            5777  6799995 77777666 5799999999999999998887777654

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.14  E-value=0.0028  Score=57.10  Aligned_cols=48  Identities=15%  Similarity=0.234  Sum_probs=39.5

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      ..++++.+.+....|+  -..|||.|.+++.++++.||+-|++||..++.
T Consensus        61 n~~~i~~i~~~~~~~v--~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~~~  108 (232)
T PRK13586         61 NEMYIKEISKIGFDWI--QVGGGIRDIEKAKRLLSLDVNALVFSTIVFTN  108 (232)
T ss_pred             hHHHHHHHHhhCCCCE--EEeCCcCCHHHHHHHHHCCCCEEEECchhhCC
Confidence            4577777776333488  45999999999999999999999999988773

>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=97.14  E-value=0.11  Score=48.25  Aligned_cols=177  Identities=15%  Similarity=0.137  Sum_probs=108.2

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EV  123 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~  123 (310)
                      .+.+++++.++..|.++.  +...+ +.|...  -...++.+.+...+||.++ |.-.+++.+..+.++|-+.|-++ +.
T Consensus        33 avi~AAee~~sPvIiq~~--~~~~~-~~g~~~--~~~~~~~~a~~~~VPValHLDH~~~~e~i~~ai~~GftSVMiDgS~  107 (284)
T PRK12737         33 VVVETAAELRSPVILAGT--PGTFS-YAGTDY--IVAIAEVAARKYNIPLALHLDHHEDLDDIKKKVRAGIRSVMIDGSH  107 (284)
T ss_pred             HHHHHHHHhCCCEEEEcC--ccHHh-hCCHHH--HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEEecCCC
Confidence            347777888888775551  11122 222100  0234556666778999887 33335677888899999998633 22


Q ss_pred             CChh-------HHHHHHHhcCCCCc----EE--e-----------ecCCHHHHHHHH-HhCCCEEEEe-cCCCCCchHHH
Q 037779          124 LTPA-------DEENHINKHNFRVP----FV--C-----------GCRNLGESLRRI-REGAAMIRTK-GEAGTGNIVEA  177 (310)
Q Consensus       124 ~~~~-------~~~~~~~~~~~~l~----v~--~-----------~v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~~~  177 (310)
                      ++.+       ++.+..++.+..+.    .+  .           ..++++|+++-. +.|+|.+.+. |..++..    
T Consensus       108 lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~y----  183 (284)
T PRK12737        108 LSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHGLY----  183 (284)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCcccccc----
Confidence            3333       33344443332111    00  0           034677777655 5788887764 4332211    


Q ss_pred             HHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          178 VRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       178 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                                    +. .          ..-++++++.+.+..++|+|.=-++|+ ..++++++.++|+.-|=++|.+..
T Consensus       184 --------------~~-~----------p~Ld~~~L~~I~~~~~iPLVlHGgSG~-~~e~~~kai~~Gi~KiNi~T~l~~  237 (284)
T PRK12737        184 --------------KG-E----------PKLDFERLAEIREKVSIPLVLHGASGV-PDEDVKKAISLGICKVNVATELKI  237 (284)
T ss_pred             --------------CC-C----------CcCCHHHHHHHHHHhCCCEEEeCCCCC-CHHHHHHHHHCCCeEEEeCcHHHH
Confidence                          10 0          122688999998888899987666777 478899999999999999998765

>TIGR00126 deoC deoxyribose-phosphate aldolase

Probab=97.12  E-value=0.0054  Score=54.49  Aligned_cols=31  Identities=32%  Similarity=0.457  Sum_probs=25.9

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs  253 (310)
                      ++||  -++|||.|.+++.+++++|++-+-..+
T Consensus       175 ~v~I--KaaGGirt~~~a~~~i~aGa~riGts~  205 (211)
T TIGR00126       175 TIGV--KASGGVRTAEDAIAMIEAGASRIGASA  205 (211)
T ss_pred             CCeE--EEeCCCCCHHHHHHHHHHhhHHhCcch
Confidence            5788  468999999999999999998765543

Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=97.11  E-value=0.0014  Score=59.43  Aligned_cols=50  Identities=12%  Similarity=0.048  Sum_probs=42.6

Q ss_pred             CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                      ...++++.+.+...+|+  -+.|||.|.+++..+++.|++-|++||..++.+
T Consensus        61 ~n~~~i~~i~~~~~~~v--~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p  110 (243)
T TIGR01919        61 NNEMMLEEVVKLLVVVE--ELSGGRRDDSSLRAALTGGRARVNGGTAALENP  110 (243)
T ss_pred             chHHHHHHHHHHCCCCE--EEcCCCCCHHHHHHHHHcCCCEEEECchhhCCH
Confidence            35678888887777898  459999999999999999999999999877733

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=97.11  E-value=0.0038  Score=56.12  Aligned_cols=70  Identities=21%  Similarity=0.464  Sum_probs=52.8

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChhhHHhhhhcc
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGL  288 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (310)
                      ..++++.+.+..++||=  ..|||.|.+++..++++|++-|++||.-.+                   +|..+.++.+++
T Consensus        63 n~~~i~~i~~~~~~~vQ--vGGGIRs~~~v~~ll~~G~~rViiGt~av~-------------------~p~~v~~~~~~~  121 (241)
T COG0106          63 NLEAIKEILEATDVPVQ--VGGGIRSLEDVEALLDAGVARVIIGTAAVK-------------------NPDLVKELCEEY  121 (241)
T ss_pred             cHHHHHHHHHhCCCCEE--eeCCcCCHHHHHHHHHCCCCEEEEecceec-------------------CHHHHHHHHHHc
Confidence            56788888888888984  499999999999999999999999996655                   344444555555


Q ss_pred             -CCceecccccc
Q 037779          289 -GEAMVGIDLND  299 (310)
Q Consensus       289 -~~~~~~~~~~~  299 (310)
                       ++.++++|-++
T Consensus       122 g~rivv~lD~r~  133 (241)
T COG0106         122 GDRIVVALDARD  133 (241)
T ss_pred             CCcEEEEEEccC
Confidence             44555555554

>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family

Probab=97.10  E-value=0.12  Score=47.89  Aligned_cols=176  Identities=14%  Similarity=0.150  Sum_probs=107.6

Q ss_pred             HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CCC
Q 037779           47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EVL  124 (310)
Q Consensus        47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~~  124 (310)
                      ..+++++.++..|.++.  +...++ .|...  -...++.+.+..++||.++ |.-.+++.+..+.++|-+.|-.+ +.+
T Consensus        32 vi~AAee~~sPvIlq~s--~~~~~~-~~~~~--~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~DgS~l  106 (282)
T TIGR01858        32 VVETAAEMRSPVILAGT--PGTFKH-AGTEY--IVALCSAASTTYNMPLALHLDHHESLDDIRQKVHAGVRSAMIDGSHF  106 (282)
T ss_pred             HHHHHHHhCCCEEEEeC--ccHHhh-CCHHH--HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEeecCCCC
Confidence            47777788888875551  111221 11100  1234556666778999987 33345678888999999998733 223


Q ss_pred             Chh-------HHHHHHHhcCCCCc----EE-------------eecCCHHHHHHHH-HhCCCEEEEe-cCCCCCchHHHH
Q 037779          125 TPA-------DEENHINKHNFRVP----FV-------------CGCRNLGESLRRI-REGAAMIRTK-GEAGTGNIVEAV  178 (310)
Q Consensus       125 ~~~-------~~~~~~~~~~~~l~----v~-------------~~v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~~~~  178 (310)
                      +.+       ++.+..+..+..+.    -+             ...++++|+++-. +.|+|.+.+. |..++..     
T Consensus       107 p~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y-----  181 (282)
T TIGR01858       107 PFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGLY-----  181 (282)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCccccCc-----
Confidence            333       33333333332110    00             0034667777655 5788887664 3332210     


Q ss_pred             HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                                   +. .          ..-++++++.+.+..++|+|.=-++|+ +.++++++.++|..-|=++|.+..
T Consensus       182 -------------k~-~----------p~Ldf~~L~~I~~~~~iPLVlHGgSG~-~~e~~~~ai~~Gi~KiNi~T~l~~  235 (282)
T TIGR01858       182 -------------KK-T----------PKLDFDRLAEIREVVDVPLVLHGASDV-PDEDVRRTIELGICKVNVATELKI  235 (282)
T ss_pred             -------------CC-C----------CccCHHHHHHHHHHhCCCeEEecCCCC-CHHHHHHHHHcCCeEEEeCcHHHH
Confidence                         10 0          122688999998888899987667777 478899999999999999998876

This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.10  E-value=0.0032  Score=57.09  Aligned_cols=48  Identities=17%  Similarity=0.244  Sum_probs=41.0

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                      ..++++.+.+.. .|+  -+.|||.|.+++.++++.|++-|++||..++.+
T Consensus        62 n~~~i~~i~~~~-~~v--~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~~~p  109 (241)
T PRK14114         62 NLPVLEKLSEFA-EHI--QIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDP  109 (241)
T ss_pred             hHHHHHHHHhhc-CcE--EEecCCCCHHHHHHHHHCCCCEEEECchhhCCH
Confidence            567788887755 688  459999999999999999999999999888744

>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed

Probab=97.10  E-value=0.099  Score=48.60  Aligned_cols=176  Identities=13%  Similarity=0.114  Sum_probs=108.2

Q ss_pred             HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CCC
Q 037779           47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EVL  124 (310)
Q Consensus        47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~~  124 (310)
                      ..+++++.++..|.+..  +...++. |...  -...++.+.+..++||.++ |.-.+++.+..+.++|-+.|-.+ +.+
T Consensus        34 vi~AAee~~sPvIlq~s--~~~~~~~-~~~~--~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~DgS~l  108 (286)
T PRK12738         34 ILEVCSEMRSPVILAGT--PGTFKHI-ALEE--IYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHF  108 (286)
T ss_pred             HHHHHHHHCCCEEEEcC--cchhhhC-CHHH--HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEeecCCCC
Confidence            47777788888875541  1111111 1100  1234556667778999987 33335677888889999998733 223


Q ss_pred             Chh-------HHHHHHHhcCCCCc----EE---------ee----cCCHHHHHHHH-HhCCCEEEEe-cCCCCCchHHHH
Q 037779          125 TPA-------DEENHINKHNFRVP----FV---------CG----CRNLGESLRRI-REGAAMIRTK-GEAGTGNIVEAV  178 (310)
Q Consensus       125 ~~~-------~~~~~~~~~~~~l~----v~---------~~----v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~~~~  178 (310)
                      +.+       ++++..+..+..+.    -+         .+    .++++|+.+-. +.|+|.+.+. |..++..     
T Consensus       109 p~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~Y-----  183 (286)
T PRK12738        109 PFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLY-----  183 (286)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCcccCCC-----
Confidence            333       33333433332110    00         00    34677777665 4688888764 4333211     


Q ss_pred             HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                                   +. .          ..-++++++.+.+..++|+|.=-++|+. .++++++.++|..-|=++|.+..
T Consensus       184 -------------~~-~----------p~Ldfd~l~~I~~~~~vPLVLHGgSG~~-~e~~~kai~~GI~KiNi~T~l~~  237 (286)
T PRK12738        184 -------------SK-T----------PKIDFQRLAEIREVVDVPLVLHGASDVP-DEFVRRTIELGVTKVNVATELKI  237 (286)
T ss_pred             -------------CC-C----------CcCCHHHHHHHHHHhCCCEEEeCCCCCC-HHHHHHHHHcCCeEEEeCcHHHH
Confidence                         10 0          1226889999988889999876777884 78999999999999999998876

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=97.10  E-value=0.0085  Score=55.26  Aligned_cols=139  Identities=19%  Similarity=0.175  Sum_probs=95.7

Q ss_pred             ceeeeecceEEEEeccCCCccccccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHH
Q 037779            5 GVVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLI   84 (310)
Q Consensus         5 ~~~~~~~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i   84 (310)
                      |+.-..++..|.++|++.    ..|+..+-|.|+      ...|+.+++.|++.| +-    |+..       .+..+.+
T Consensus        56 g~~Rm~~p~~I~aIk~~V----~iPVigk~Righ------~~Ea~~L~~~GvDiI-D~----Te~l-------rpad~~~  113 (293)
T PRK04180         56 GVARMADPKMIEEIMDAV----SIPVMAKARIGH------FVEAQILEALGVDYI-DE----SEVL-------TPADEEY  113 (293)
T ss_pred             CeeecCCHHHHHHHHHhC----CCCeEEeehhhH------HHHHHHHHHcCCCEE-ec----cCCC-------CchHHHH
Confidence            455555566677777764    468888888766      788999999999998 42    2211       1124567


Q ss_pred             HHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-------------------------C-------------CCCh
Q 037779           85 KQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-------------------------E-------------VLTP  126 (310)
Q Consensus        85 ~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-------------------------~-------------~~~~  126 (310)
                      +.++..+++|+++...  +..++....+.|+|.|-.+                         .             ...+
T Consensus       114 ~~~K~~f~~~fmad~~--~l~EAlrai~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~  191 (293)
T PRK04180        114 HIDKWDFTVPFVCGAR--NLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAP  191 (293)
T ss_pred             HHHHHHcCCCEEccCC--CHHHHHHHHHCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCC
Confidence            7888888999988744  4467888888999998633                         0             1123


Q ss_pred             hHHHHHHHhcCCCCcEE--e--ecCCHHHHHHHHHhCCCEEEEecC
Q 037779          127 ADEENHINKHNFRVPFV--C--GCRNLGESLRRIREGAAMIRTKGE  168 (310)
Q Consensus       127 ~~~~~~~~~~~~~l~v~--~--~v~t~~ea~~a~~~Gad~I~v~g~  168 (310)
                      .++++.+.+. ..++++  +  +++|++++..+.+.|++.+.+.+.
T Consensus       192 ~elL~ei~~~-~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSa  236 (293)
T PRK04180        192 YELVKEVAEL-GRLPVVNFAAGGIATPADAALMMQLGADGVFVGSG  236 (293)
T ss_pred             HHHHHHHHHh-CCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHH
Confidence            3444555442 346765  3  489999999999999999988633

>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=97.08  E-value=0.12  Score=48.09  Aligned_cols=176  Identities=15%  Similarity=0.156  Sum_probs=108.6

Q ss_pred             HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CCC
Q 037779           47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EVL  124 (310)
Q Consensus        47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~~  124 (310)
                      ..+++++.++..|.++.  +...+ +.|...  -...++.+.+...+||.++ |.-.+++.+..+.++|-+.|-.+ +.+
T Consensus        34 vi~AAee~~sPvIiq~~--~~~~~-~~g~~~--~~~~~~~~A~~~~VPV~lHLDHg~~~e~i~~Ai~~GftSVM~DgS~l  108 (284)
T PRK09195         34 VVETAAELHSPVIIAGT--PGTFS-YAGTEY--LLAIVSAAAKQYHHPLALHLDHHEKFDDIAQKVRSGVRSVMIDGSHL  108 (284)
T ss_pred             HHHHHHHhCCCEEEEcC--hhHHh-hCCHHH--HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEeCCCCC
Confidence            47777778888775551  11121 122100  1334566677789999886 33335677888889999998733 223


Q ss_pred             Chh-------HHHHHHHhcCCCCc----EE-------------eecCCHHHHHHHH-HhCCCEEEEe-cCCCCCchHHHH
Q 037779          125 TPA-------DEENHINKHNFRVP----FV-------------CGCRNLGESLRRI-REGAAMIRTK-GEAGTGNIVEAV  178 (310)
Q Consensus       125 ~~~-------~~~~~~~~~~~~l~----v~-------------~~v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~~~~  178 (310)
                      +.+       ++.+..+..+..+.    .+             ...++++|+++-. +.|+|.+.+. |..++.      
T Consensus       109 ~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~------  182 (284)
T PRK09195        109 PFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGM------  182 (284)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccc------
Confidence            333       33333333331111    00             0024677877665 4688888764 433221      


Q ss_pred             HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                                  ++. .          ..-++++++.+.+..++|+|.=-++|+. .++++++.+.|..-|=++|.+..
T Consensus       183 ------------y~~-~----------p~Ld~~~L~~I~~~~~vPLVLHGgSG~~-~e~~~~ai~~Gi~KiNi~T~l~~  237 (284)
T PRK09195        183 ------------YKG-E----------PKLDFDRLENIRQWVNIPLVLHGASGLP-TKDIQQTIKLGICKVNVATELKI  237 (284)
T ss_pred             ------------cCC-C----------CcCCHHHHHHHHHHhCCCeEEecCCCCC-HHHHHHHHHcCCeEEEeCcHHHH
Confidence                        111 0          1226889999988888999876677884 78999999999999999998875

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=97.06  E-value=0.0041  Score=55.60  Aligned_cols=48  Identities=21%  Similarity=0.459  Sum_probs=42.5

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      +.++++.+.+..++|+  .+.|||.+.+++.+++++||+.|++|+..++.
T Consensus        60 ~~~~i~~i~~~~~~pi--~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~d  107 (230)
T TIGR00007        60 NLPVIKKIVRETGVPV--QVGGGIRSLEDVEKLLDLGVDRVIIGTAAVEN  107 (230)
T ss_pred             cHHHHHHHHHhcCCCE--EEeCCcCCHHHHHHHHHcCCCEEEEChHHhhC
Confidence            5678888877777899  45999999999999999999999999999974

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []

Probab=97.06  E-value=0.0026  Score=60.92  Aligned_cols=120  Identities=24%  Similarity=0.391  Sum_probs=62.5

Q ss_pred             cCCCeee---ecCCCChhHHHHHHH---hcCCCCcEEee---cCCHHHHHH-HHHhCCCEEEEecCC-CCCchHHHHHHH
Q 037779          113 IGVDYVD---ESEVLTPADEENHIN---KHNFRVPFVCG---CRNLGESLR-RIREGAAMIRTKGEA-GTGNIVEAVRHV  181 (310)
Q Consensus       113 aGad~v~---~~~~~~~~~~~~~~~---~~~~~l~v~~~---v~t~~ea~~-a~~~Gad~I~v~g~~-~~~~~~~~~~~~  181 (310)
                      .|.+.+.   .++..+++++.+++.   ...++.++.+.   .+..+++.. +.+.|+|+|.+.|.. +|+--       
T Consensus       171 ~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAa-------  243 (368)
T PF01645_consen  171 PGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAA-------  243 (368)
T ss_dssp             TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSE-------
T ss_pred             CCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCC-------
Confidence            6777775   345667776665554   44456666554   234444444 678999999998663 44310       


Q ss_pred             HHhhcceecccccCchhHHhhhccCCCcHH-----HHHHHHhc---CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779          182 RSVMGDIRVLRNMDDDEVFTFAKNIAAPYD-----LVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       182 ~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~-----l~~~i~~~---~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs  253 (310)
                                +....|       .++.|++     ..+.+.+.   .++.+  +++||+.|+.|+.+++.+|||+|.+|+
T Consensus       244 ----------p~~~~d-------~~GlP~~~~l~~a~~~L~~~glr~~V~L--i~sGgl~t~~dv~kalaLGAD~v~igt  304 (368)
T PF01645_consen  244 ----------PLTSMD-------HVGLPTEYALARAHQALVKNGLRDRVSL--IASGGLRTGDDVAKALALGADAVYIGT  304 (368)
T ss_dssp             ----------ECCHHH-------HC---HHHHHHHHHHHHHCTT-CCCSEE--EEESS--SHHHHHHHHHCT-SEEE-SH
T ss_pred             ----------chhHHh-------hCCCcHHHHHHHHHHHHHHcCCCCceEE--EEeCCccCHHHHHHHHhcCCCeeEecc
Confidence                      000000       1122221     12222222   13555  789999999999999999999999999


Q ss_pred             ccccC
Q 037779          254 GVFKS  258 (310)
Q Consensus       254 ai~~~  258 (310)
                      +++-+
T Consensus       305 ~~liA  309 (368)
T PF01645_consen  305 AALIA  309 (368)
T ss_dssp             HHHHH
T ss_pred             hhhhh
Confidence            88764

This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.

>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway

Probab=97.02  E-value=0.025  Score=50.36  Aligned_cols=159  Identities=16%  Similarity=0.167  Sum_probs=82.9

Q ss_pred             hHHHHHHHhhcCcceEeeccccc----h-HHHHHHHHcCCCeeeecCCCChhHHHHHHHh---cCCCCcEEeecCCHHHH
Q 037779           81 PQLIKQIKSSVTIPVMAKARIGH----F-VEAQILEAIGVDYVDESEVLTPADEENHINK---HNFRVPFVCGCRNLGES  152 (310)
Q Consensus        81 ~~~i~~i~~~~~lPv~~kd~i~~----~-~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~---~~~~l~v~~~v~t~~ea  152 (310)
                      .+.++.+++.. .|++......+    . ..++.+.+.|+|++..+......-+...+..   ++.++.+++...++...
T Consensus        39 ~~~i~~l~~~~-~~i~~DlK~~DIg~tv~~~~~~~~~~gad~~Tvh~~~G~~~l~~~~~~~~~~~~~~~~v~~lss~~~~  117 (216)
T cd04725          39 PEIVKELRELG-FLVFLDLKLGDIPNTVAAAAEALLGLGADAVTVHPYGGSDMLKAALEAAEEKGKGLFAVTVLSSPGAL  117 (216)
T ss_pred             HHHHHHHHHCC-CcEEEEeecCchHHHHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHHHhccCCeEEEEEcCCCCCHH
Confidence            66788888755 77777544431    1 2234566789999986655444434333332   23445555555554321


Q ss_pred             HHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCC
Q 037779          153 LRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGV  232 (310)
Q Consensus       153 ~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI  232 (310)
                       ...+ +.+.   .   .........+.+++.+.+-.+.+              ....+.++.... .+.++   ...||
T Consensus       118 -~~q~-~~~~---~---~~~~~~~~~~~a~~~g~~G~V~~--------------~~~~~~i~~~~~-~~~~~---ltPGI  171 (216)
T cd04725         118 -DLQE-GIPG---S---LEDLVERLAKLAREAGVDGVVCG--------------ATEPEALRRALG-PDFLI---LTPGI  171 (216)
T ss_pred             -HHHh-hhcC---C---HHHHHHHHHHHHHHHCCCEEEEC--------------CcchHHHHHhhC-CCCeE---EcCCc
Confidence             1111 1100   0   00011122222222221100000              111222222211 24454   36999


Q ss_pred             CCHH----------HHHHHHHcCCCEEEEccccccCCCHHHHHHH
Q 037779          233 ATPA----------DAAMMMQLGCDGVFVGSGVFKSGDPVRRARA  267 (310)
Q Consensus       233 ~t~~----------di~~~~~~GadgV~VGsai~~~~dp~~~~~~  267 (310)
                      + ++          +..++++.|++.+++|+.|++++||.+.+++
T Consensus       172 ~-~~~~~~dq~r~~~~~~a~~~g~~~ivvGR~I~~a~~p~~~~~~  215 (216)
T cd04725         172 G-AQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQAADPVAAAEA  215 (216)
T ss_pred             C-CCCCccccccccCHHHHHHcCCcEEEEChhhccCCCHHHHHhc
Confidence            6 56          7889999999999999999999999988765

In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=97.01  E-value=0.011  Score=56.93  Aligned_cols=161  Identities=20%  Similarity=0.229  Sum_probs=84.8

Q ss_pred             CccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh-HHHHHHHhhcCcceEeeccccchHHHHHHHHcCC
Q 037779           37 GVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDP-QLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGV  115 (310)
Q Consensus        37 g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~-~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGa  115 (310)
                      ..|..+.++.++..+.+.|+..+...+    .. +..    ..++ ..+.+|...-.-|-+       .+-++.+.+.++
T Consensus        50 APMagVtd~~fr~~~~~~Galgvvsae----gl-~~~----~~~~~~~~~QI~g~~~~~~~-------a~aa~~~~e~~~  113 (369)
T TIGR01304        50 HPMDALVSPEFAIELGELGGLGVLNLE----GL-WGR----HEDPDPAIAKIAEAYEEGDQ-------AAATRLLQELHA  113 (369)
T ss_pred             cCCCcccCHHHHHHHHHcCCcccccch----HH-Hhc----CCCHHHHHHHHhhcCCChHH-------HHHHHHHHHcCC
Confidence            445567888999999999996652221    00 000    0111 122222221000000       023344455555


Q ss_pred             CeeeecCCCChhHH---HHHHHhcCCCCcEEeecC--CH-HHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhccee
Q 037779          116 DYVDESEVLTPADE---ENHINKHNFRVPFVCGCR--NL-GESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIR  189 (310)
Q Consensus       116 d~v~~~~~~~~~~~---~~~~~~~~~~l~v~~~v~--t~-~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~  189 (310)
                      +.+      .+..+   ++.+++.  ++.+-+...  +. +-++.+.++|+|++.++|..-+                  
T Consensus       114 ~~~------~p~l~~~ii~~vr~a--~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~------------------  167 (369)
T TIGR01304       114 APL------KPELLGERIAEVRDS--GVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVS------------------  167 (369)
T ss_pred             Ccc------ChHHHHHHHHHHHhc--ceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchh------------------
Confidence            543      33333   3333332  233333322  33 3445667899999999865210                  


Q ss_pred             cccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779          190 VLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       190 ~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs  253 (310)
                       ..+..         . ..++..+..+.+..++||+  + |+|.|.+++.+++++|||+|++|+
T Consensus       168 -q~~~s---------g-~~~p~~l~~~i~~~~IPVI--~-G~V~t~e~A~~~~~aGaDgV~~G~  217 (369)
T TIGR01304       168 -AEHVS---------T-SGEPLNLKEFIGELDVPVI--A-GGVNDYTTALHLMRTGAAGVIVGP  217 (369)
T ss_pred             -hhccC---------C-CCCHHHHHHHHHHCCCCEE--E-eCCCCHHHHHHHHHcCCCEEEECC
Confidence             00000         0 1123334444444578994  3 899999999999999999999885

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=96.99  E-value=0.021  Score=54.42  Aligned_cols=87  Identities=20%  Similarity=0.194  Sum_probs=63.6

Q ss_pred             CChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeecC--------CCChhHHHHHHHh----cCCCCcEEe--
Q 037779           79 SDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESE--------VLTPADEENHINK----HNFRVPFVC--  144 (310)
Q Consensus        79 ~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~--------~~~~~~~~~~~~~----~~~~l~v~~--  144 (310)
                      ...+.++.+++.+++||++|.. ++.+.++.+.++|+|.|..+.        ..++.+....+..    .+..+++++  
T Consensus       200 ~~~~~i~~l~~~~~~PvivKgv-~~~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~G  278 (344)
T cd02922         200 LTWDDIKWLRKHTKLPIVLKGV-QTVEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDG  278 (344)
T ss_pred             CCHHHHHHHHHhcCCcEEEEcC-CCHHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence            4578899999999999999954 566788999999999987321        1223233333322    122366666  


Q ss_pred             ecCCHHHHHHHHHhCCCEEEEe
Q 037779          145 GCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       145 ~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                      ++.+..++.+++.+||+.+.+.
T Consensus       279 GIr~G~Dv~kalaLGA~aV~iG  300 (344)
T cd02922         279 GVRRGTDVLKALCLGAKAVGLG  300 (344)
T ss_pred             CCCCHHHHHHHHHcCCCEEEEC
Confidence            4999999999999999999985

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=96.98  E-value=0.2  Score=46.57  Aligned_cols=175  Identities=15%  Similarity=0.194  Sum_probs=106.6

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EV  123 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~  123 (310)
                      ...+++++.+...|.++.  +...+ +.|...  -...++.+.+...+||.++ |.-.+++.+..+.++|-+.|-++ +.
T Consensus        33 avi~AAee~~sPvIlq~~--~~~~~-~~g~~~--~~~~~~~~A~~~~VPValHLDH~~~~e~i~~ai~~GftSVM~DgS~  107 (284)
T PRK12857         33 AIVAAAEAEKSPVIIQAS--QGAIK-YAGIEY--ISAMVRTAAEKASVPVALHLDHGTDFEQVMKCIRNGFTSVMIDGSK  107 (284)
T ss_pred             HHHHHHHHhCCCEEEEec--hhHhh-hCCHHH--HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeEEEeCCC
Confidence            346777788888775551  11121 222100  0223555666778999887 33335677788888999998632 22


Q ss_pred             CChh-------HHHHHHHhcCCCCcEEee-------------------cCCHHHHHHHH-HhCCCEEEEe-cCCCCCchH
Q 037779          124 LTPA-------DEENHINKHNFRVPFVCG-------------------CRNLGESLRRI-REGAAMIRTK-GEAGTGNIV  175 (310)
Q Consensus       124 ~~~~-------~~~~~~~~~~~~l~v~~~-------------------v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~  175 (310)
                      ++.+       ++.+..+..+  +.+=.+                   .++++++++-. +.|+|.+.+. |..++.   
T Consensus       108 lp~eeNi~~T~~vv~~Ah~~g--vsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~---  182 (284)
T PRK12857        108 LPLEENIALTKKVVEIAHAVG--VSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGP---  182 (284)
T ss_pred             CCHHHHHHHHHHHHHHHHHcC--CEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccc---
Confidence            3433       2333333322  211111                   24667777655 4688877664 332221   


Q ss_pred             HHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccc
Q 037779          176 EAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGV  255 (310)
Q Consensus       176 ~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai  255 (310)
                                     ++. .          ..-++++++.+.+..++|+|.=-++|+ +.++++++.++|..-|=++|.+
T Consensus       183 ---------------y~~-~----------p~Ld~~~L~~i~~~~~vPLVlHGgSG~-~~e~~~~ai~~Gi~KiNi~T~~  235 (284)
T PRK12857        183 ---------------YKG-E----------PKLDFDRLAKIKELVNIPIVLHGSSGV-PDEAIRKAISLGVRKVNIDTNI  235 (284)
T ss_pred             ---------------cCC-C----------CcCCHHHHHHHHHHhCCCEEEeCCCCC-CHHHHHHHHHcCCeEEEeCcHH
Confidence                           010 0          122688999998877899987667787 4789999999999999999988


Q ss_pred             cc
Q 037779          256 FK  257 (310)
Q Consensus       256 ~~  257 (310)
                      ..
T Consensus       236 ~~  237 (284)
T PRK12857        236 RE  237 (284)
T ss_pred             HH
Confidence            76

>TIGR00167 cbbA ketose-bisphosphate aldolases

Probab=96.96  E-value=0.17  Score=47.05  Aligned_cols=177  Identities=11%  Similarity=0.141  Sum_probs=105.3

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc--CcceEee-ccccchHHHHHHHHcCCCeeeec-
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV--TIPVMAK-ARIGHFVEAQILEAIGVDYVDES-  121 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~--~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-  121 (310)
                      .+.+++++.++..|.++.  +...+++.|..  .-...++...+..  .+||.++ |.-.+++.+..+.++|-+.|-++ 
T Consensus        33 avi~AAee~~sPvIlq~~--~~~~~~~~g~~--~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiDg  108 (288)
T TIGR00167        33 AVLEAAAEEKSPVIIQFS--NGAAKYIAGLG--AISAMVKAMSEAYPYGVPVALHLDHGASEEDCAQAVKAGFSSVMIDG  108 (288)
T ss_pred             HHHHHHHHHCCCEEEECC--cchhhccCCHH--HHHHHHHHHHHhccCCCcEEEECCCCCCHHHHHHHHHcCCCEEEecC
Confidence            347777888888875551  11111112210  0022344455556  8899886 33335677888888999998733 


Q ss_pred             CCCChhH-------HHHHHHhcCCCCcEEee-------------------cCCHHHHHHHH-HhCCCEEEEe-cCCCCCc
Q 037779          122 EVLTPAD-------EENHINKHNFRVPFVCG-------------------CRNLGESLRRI-REGAAMIRTK-GEAGTGN  173 (310)
Q Consensus       122 ~~~~~~~-------~~~~~~~~~~~l~v~~~-------------------v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~  173 (310)
                      +.++.++       +.+..+.  .|+.+=.+                   .++++|+++-. +.|+|.+.+. |..++..
T Consensus       109 S~lp~eeNi~~T~~vv~~Ah~--~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y  186 (288)
T TIGR00167       109 SHEPFEENIELTKKVVERAHK--MGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVY  186 (288)
T ss_pred             CCCCHHHHHHHHHHHHHHHHH--cCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCcccccc
Confidence            2233332       2233332  23222111                   23567777655 4688887664 4332210


Q ss_pred             hHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779          174 IVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       174 ~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs  253 (310)
                                        +. .+         ..-++++++.+.+..++|+|.=-++|+ +.++++++.+.|+.-|=++|
T Consensus       187 ------------------~~-~p---------~~Ld~~~L~~I~~~v~vPLVlHGgSG~-~~e~~~~ai~~Gi~KiNi~T  237 (288)
T TIGR00167       187 ------------------KG-EP---------KGLDFERLEEIQKYVNLPLVLHGGSGI-PDEEIKKAISLGVVKVNIDT  237 (288)
T ss_pred             ------------------CC-CC---------CccCHHHHHHHHHHhCCCEEEeCCCCC-CHHHHHHHHHcCCeEEEcCh
Confidence                              10 00         013688999998888999976656666 35899999999999999999


Q ss_pred             cccc
Q 037779          254 GVFK  257 (310)
Q Consensus       254 ai~~  257 (310)
                      .+..
T Consensus       238 ~l~~  241 (288)
T TIGR00167       238 ELQI  241 (288)
T ss_pred             HHHH
Confidence            8865

fructose-bisphosphate and tagatose-bisphosphate aldolase.

>PRK10605 N-ethylmaleimide reductase; Provisional

Probab=96.94  E-value=0.023  Score=54.59  Aligned_cols=53  Identities=21%  Similarity=0.204  Sum_probs=42.8

Q ss_pred             HHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHH
Q 037779          210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRA  265 (310)
Q Consensus       210 ~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~  265 (310)
                      ..+.+.+++..++||  ++.|++ +++.+.++++.| +|.|.+|++++..+|....+
T Consensus       281 ~~~~~~ik~~~~~pv--~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~iadPd~~~k~  334 (362)
T PRK10605        281 DAFREKVRARFHGVI--IGAGAY-TAEKAETLIGKGLIDAVAFGRDYIANPDLVARL  334 (362)
T ss_pred             HHHHHHHHHHCCCCE--EEeCCC-CHHHHHHHHHcCCCCEEEECHHhhhCccHHHHH
Confidence            455677777777898  556887 899999999987 99999999999987765444

>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]

Probab=96.93  E-value=0.024  Score=50.03  Aligned_cols=119  Identities=18%  Similarity=0.268  Sum_probs=83.5

Q ss_pred             HHHhhcCcceEeeccccc-hHHHHHHHHcCCCeeeec-CCCChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCE
Q 037779           86 QIKSSVTIPVMAKARIGH-FVEAQILEAIGVDYVDES-EVLTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAM  162 (310)
Q Consensus        86 ~i~~~~~lPv~~kd~i~~-~~~~~~~~~aGad~v~~~-~~~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~  162 (310)
                      ..++.-=+||++.+.... ...++.+.+.|.+.|-++ ....+.+.++.+.+..++..+.++ +-|++++..+.++|+++
T Consensus         9 ~l~~~~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~f   88 (211)
T COG0800           9 KLKAQPVVPVIRGDDVEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQF   88 (211)
T ss_pred             HHHHCCeeEEEEeCCHHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCE
Confidence            333333478877766643 235678888999998754 223466788888776667778775 78899999999999999


Q ss_pred             EEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHH
Q 037779          163 IRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM  242 (310)
Q Consensus       163 I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~  242 (310)
                      +..  +    +                                  .+.++++.... .++|+  +  =|+.|+..+..++
T Consensus        89 iVs--P----~----------------------------------~~~ev~~~a~~-~~ip~--~--PG~~TptEi~~Al  123 (211)
T COG0800          89 IVS--P----G----------------------------------LNPEVAKAANR-YGIPY--I--PGVATPTEIMAAL  123 (211)
T ss_pred             EEC--C----C----------------------------------CCHHHHHHHHh-CCCcc--c--CCCCCHHHHHHHH
Confidence            764  1    1                                  02334444443 46788  4  7888999999999


Q ss_pred             HcCCCEE
Q 037779          243 QLGCDGV  249 (310)
Q Consensus       243 ~~GadgV  249 (310)
                      ++|++.+
T Consensus       124 e~G~~~l  130 (211)
T COG0800         124 ELGASAL  130 (211)
T ss_pred             HcChhhe
Confidence            9998876

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=96.93  E-value=0.016  Score=55.53  Aligned_cols=120  Identities=20%  Similarity=0.169  Sum_probs=72.3

Q ss_pred             HHHHHHHHcCCcEEEecc-cccchhhhcCCCCCC-CChHHHHHHHhhcCcceEeeccc--cchHHHHHHHHcCCCeeeec
Q 037779           46 EQARIAEEAGACAVMALE-RVPADIRAQGGVARM-SDPQLIKQIKSSVTIPVMAKARI--GHFVEAQILEAIGVDYVDES  121 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~~d~r~~~G~~~~-~~~~~i~~i~~~~~lPv~~kd~i--~~~~~~~~~~~aGad~v~~~  121 (310)
                      +..+.....+++++ .++ +.+.+.....|.... .-.+.++.+++.+++||++|...  ...+.++.+.++|+|+|..+
T Consensus       139 ~~~~~~~~~~adal-~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vs  217 (352)
T PRK05437        139 EAQRAVEMIEADAL-QIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPVIVKEVGFGISKETAKRLADAGVKAIDVA  217 (352)
T ss_pred             HHHHHHHhcCCCcE-EEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHHcCCCEEEEC
Confidence            34555666678877 343 111111111111000 01367888999899999998542  23467888999999998732


Q ss_pred             C-C-------------------------CChhHHHHHHHhcCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779          122 E-V-------------------------LTPADEENHINKHNFRVPFVC--GCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       122 ~-~-------------------------~~~~~~~~~~~~~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                      . .                         .+....+..+.+...++++++  ++++..++.+++.+|||.+.+.
T Consensus       218 g~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig  290 (352)
T PRK05437        218 GAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPIIASGGIRNGLDIAKALALGADAVGMA  290 (352)
T ss_pred             CCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEh
Confidence            1 1                         011112222333213566666  4899999999999999999985

>PRK07709 fructose-bisphosphate aldolase; Provisional

Probab=96.93  E-value=0.22  Score=46.31  Aligned_cols=177  Identities=15%  Similarity=0.164  Sum_probs=105.2

Q ss_pred             HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC--cceEee-ccccchHHHHHHHHcCCCeeeec-C
Q 037779           47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT--IPVMAK-ARIGHFVEAQILEAIGVDYVDES-E  122 (310)
Q Consensus        47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~--lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~  122 (310)
                      ..+++++.++..|.++.  +...++..|...  -...++.+.+...  +||.++ |.-.+++.+..+.++|-+.|-++ +
T Consensus        34 vi~AAe~~~sPvIiq~~--~~~~~~~~~~~~--~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~GftSVM~DgS  109 (285)
T PRK07709         34 ILAAAEEEKSPVILGVS--EGAARHMTGFKT--VVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDAGFTSVMIDAS  109 (285)
T ss_pred             HHHHHHHHCCCEEEEcC--cchhhhcCCHHH--HHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEEeCC
Confidence            46777777888876651  111111012100  0234555555554  799886 33335677888899999998632 2


Q ss_pred             CCChh-------HHHHHHHhcCCCCc----EE--e------e---cCCHHHHHHHH-HhCCCEEEEe-cCCCCCchHHHH
Q 037779          123 VLTPA-------DEENHINKHNFRVP----FV--C------G---CRNLGESLRRI-REGAAMIRTK-GEAGTGNIVEAV  178 (310)
Q Consensus       123 ~~~~~-------~~~~~~~~~~~~l~----v~--~------~---v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~~~~  178 (310)
                      .++.+       ++++..++.+..+.    .+  .      +   .++++|++.-. +.|+|.+.+. |..++-      
T Consensus       110 ~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvaiGt~HG~------  183 (285)
T PRK07709        110 HHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGP------  183 (285)
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEeecccccC------
Confidence            23333       33333333332111    00  0      0   35777877665 4688887664 433221      


Q ss_pred             HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                                  ++. .          ..-++++++.+.+..++|+|.=-++|+ ..++++++.++|+.-|=++|.+..
T Consensus       184 ------------Y~~-~----------p~L~~~~L~~I~~~~~iPLVLHGgSG~-~~e~~~~ai~~Gi~KiNi~T~l~~  238 (285)
T PRK07709        184 ------------YKG-E----------PNLGFAEMEQVRDFTGVPLVLHGGTGI-PTADIEKAISLGTSKINVNTENQI  238 (285)
T ss_pred             ------------cCC-C----------CccCHHHHHHHHHHHCCCEEEeCCCCC-CHHHHHHHHHcCCeEEEeChHHHH
Confidence                        010 0          122678889998877899976656666 368999999999999999998765

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=96.91  E-value=0.053  Score=47.69  Aligned_cols=28  Identities=43%  Similarity=0.643  Sum_probs=24.0

Q ss_pred             CCCCEEEEccCCCCCHHHHHHHHHcCCCEE
Q 037779          220 GRLPVVHFAAGGVATPADAAMMMQLGCDGV  249 (310)
Q Consensus       220 ~~iPVv~ia~GGI~t~~di~~~~~~GadgV  249 (310)
                      .++||  -++|||.|.+++.+++++|++-+
T Consensus       173 ~~v~i--k~aGGikt~~~~l~~~~~g~~ri  200 (203)
T cd00959         173 GRVGV--KAAGGIRTLEDALAMIEAGATRI  200 (203)
T ss_pred             CCceE--EEeCCCCCHHHHHHHHHhChhhc
Confidence            45788  46899999999999999998865

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=96.90  E-value=0.014  Score=57.77  Aligned_cols=124  Identities=18%  Similarity=0.254  Sum_probs=80.9

Q ss_pred             eecCCccccC-CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhh-cCcceEeeccccchHHHHHH
Q 037779           33 MLRGGVIMDV-VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSS-VTIPVMAKARIGHFVEAQIL  110 (310)
Q Consensus        33 ~l~~g~i~~~-~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~-~~lPv~~kd~i~~~~~~~~~  110 (310)
                      ++-+|.+.-. .+.+.++.+.++|++.|. +     |...  |.. ..-.+.++.+++. .++||++++.. +.+.++.+
T Consensus       213 l~V~aav~~~~~~~~r~~~L~~aG~d~I~-v-----d~a~--g~~-~~~~~~i~~i~~~~~~~~vi~G~v~-t~~~a~~l  282 (450)
T TIGR01302       213 LIVGAAVGTREFDKERAEALVKAGVDVIV-I-----DSSH--GHS-IYVIDSIKEIKKTYPDLDIIAGNVA-TAEQAKAL  282 (450)
T ss_pred             EEEEEEecCchhHHHHHHHHHHhCCCEEE-E-----ECCC--CcH-hHHHHHHHHHHHhCCCCCEEEEeCC-CHHHHHHH
Confidence            3334444332 335789999999999883 3     1211  110 1226778899888 48999885544 45788899


Q ss_pred             HHcCCCeeeec--C------------CCChhHHHHHHHh--cCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779          111 EAIGVDYVDES--E------------VLTPADEENHINK--HNFRVPFVC--GCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       111 ~~aGad~v~~~--~------------~~~~~~~~~~~~~--~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                      .++|||+|...  .            ..+....+..+.+  +..++++++  ++++..++.+|+.+||+.+.+.
T Consensus       283 ~~aGad~i~vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G  356 (450)
T TIGR01302       283 IDAGADGLRVGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLG  356 (450)
T ss_pred             HHhCCCEEEECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence            99999998411  0            0011122222222  235689999  7999999999999999999885

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PRK12656 fructose-6-phosphate aldolase; Reviewed

Probab=96.89  E-value=0.17  Score=45.26  Aligned_cols=189  Identities=13%  Similarity=0.139  Sum_probs=109.3

Q ss_pred             cCCCHHHHHHHHHcC-CcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC--cceEeeccccc----hHHHHHHH-H
Q 037779           41 DVVTPEQARIAEEAG-ACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT--IPVMAKARIGH----FVEAQILE-A  112 (310)
Q Consensus        41 ~~~~~~~a~~~~~~G-a~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~--lPv~~kd~i~~----~~~~~~~~-~  112 (310)
                      +..+.+..+.+.+.| .+++. =  .|+=.+ +.|.  ....+.++++++..+  .||.+...-.+    .+++..+. .
T Consensus         6 DtAd~~~i~~~~~~~~i~GvT-T--NPsll~-k~g~--~~~~~~~~~i~~~i~~~~~vs~ev~~~~~~~mi~eA~~l~~~   79 (222)
T PRK12656          6 DTLNLEAIKKWHEILPLAGVT-S--NPSIAK-KEGD--IDFFERIREVREIIGDEASIHVQVVAQDYEGILKDAHEIRRQ   79 (222)
T ss_pred             ecCCHHHHHHHHhcCCcceEe-C--CHHHHH-hcCC--CCHHHHHHHHHHHhCCCCcEEEEEEECCHHHHHHHHHHHHHH
Confidence            445677777777765 46652 1  223222 2221  122567788888763  57776544332    23455554 3


Q ss_pred             cCCCeee-ecCCCChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHHHHHhhccee
Q 037779          113 IGVDYVD-ESEVLTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRHVRSVMGDIR  189 (310)
Q Consensus       113 aGad~v~-~~~~~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~~~~  189 (310)
                      .|-+.++ ++....--...+.+++.+  +.+.+. +.|++++..+.+.||+||.+. |+..                   
T Consensus        80 ~~~nv~VKIP~T~~Gl~Ai~~L~~~G--i~vn~T~ifs~~Qa~~Aa~aGa~yvsPyvgRi~-------------------  138 (222)
T PRK12656         80 CGDDVYIKVPVTPAGLAAIKTLKAEG--YHITATAIYTVFQGLLAIEAGADYLAPYYNRME-------------------  138 (222)
T ss_pred             hCCCEEEEeCCCHHHHHHHHHHHHCC--CceEEeeeCCHHHHHHHHHCCCCEEecccchhh-------------------
Confidence            6644554 554322334555565544  444433 789999999999999999875 4311                   


Q ss_pred             cccccCchhHHhhhccCCCcHHHHHH----HHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC----CC
Q 037779          190 VLRNMDDDEVFTFAKNIAAPYDLVMQ----TKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS----GD  260 (310)
Q Consensus       190 ~l~~~~~d~~~~~~~~~~~~~~l~~~----i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~----~d  260 (310)
                         ....|           +.+++..    +... .+.-|+   ..-+.++.++.++.++|||.+-+.-.+++.    +.
T Consensus       139 ---d~g~D-----------~~~~i~~i~~~~~~~~~~tkIL---aAS~r~~~~v~~a~~~G~d~vTvp~~vl~~l~~~p~  201 (222)
T PRK12656        139 ---NLNID-----------SNAVIGQLAEAIDRENSDSKIL---AASFKNVAQVNKAFALGAQAVTAGPDVFEAAFAMPS  201 (222)
T ss_pred             ---hcCCC-----------HHHHHHHHHHHHHhcCCCCEEE---EEecCCHHHHHHHHHcCCCEEecCHHHHHHHhcCCc
Confidence               01111           1222322    2222 233342   467889999999999999999999877663    33


Q ss_pred             HHHHHHHHHHHHH
Q 037779          261 PVRRARAIVQAVT  273 (310)
Q Consensus       261 p~~~~~~~~~~~~  273 (310)
                      ....+++|.+-++
T Consensus       202 t~~~~~~F~~dw~  214 (222)
T PRK12656        202 IQKAVDDFADDWE  214 (222)
T ss_pred             HHHHHHHHHHHHH
Confidence            4555666666554

>PRK08610 fructose-bisphosphate aldolase; Reviewed

Probab=96.88  E-value=0.3  Score=45.46  Aligned_cols=178  Identities=12%  Similarity=0.135  Sum_probs=105.3

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC--cceEee-ccccchHHHHHHHHcCCCeeeec-
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT--IPVMAK-ARIGHFVEAQILEAIGVDYVDES-  121 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~--lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-  121 (310)
                      ...+++++.++..|.++.  +...++.+|...  -...++.+.+...  +||.++ |.-.+++.+..+.++|-+.|-++ 
T Consensus        33 avi~AAee~~sPvIl~~~--~~~~~~~~~~~~--~~~~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai~~GftSVM~Dg  108 (286)
T PRK08610         33 AILEASQEENAPVILGVS--EGAARYMSGFYT--VVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDAGFTSVMIDA  108 (286)
T ss_pred             HHHHHHHHHCCCEEEEcC--ccHHhhcCcHHH--HHHHHHHHHHHcCCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEeC
Confidence            347777888888876552  111222121100  1234455555555  899886 33335677888899999998633 


Q ss_pred             CCCChh-------HHHHHHHhcCCCCc----EE--e------e---cCCHHHHHHHH-HhCCCEEEEe-cCCCCCchHHH
Q 037779          122 EVLTPA-------DEENHINKHNFRVP----FV--C------G---CRNLGESLRRI-REGAAMIRTK-GEAGTGNIVEA  177 (310)
Q Consensus       122 ~~~~~~-------~~~~~~~~~~~~l~----v~--~------~---v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~~~  177 (310)
                      +.++.+       ++++..+..+..+.    .+  .      +   .++++|++.-. +.|+|.+.+. |..++-     
T Consensus       109 S~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~-----  183 (286)
T PRK08610        109 SHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSVHGP-----  183 (286)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeeccccccc-----
Confidence            223333       33333333222111    00  0      0   25677777665 4688887664 433221     


Q ss_pred             HHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          178 VRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       178 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                                   ++. .          ..-++++++.+.+..++|+|.=-++|+ ..++++++.++|+.-|=++|.+-.
T Consensus       184 -------------Y~~-~----------p~Ld~~~L~~I~~~~~vPLVLHGgSG~-~~e~~~~ai~~GI~KiNi~T~l~~  238 (286)
T PRK08610        184 -------------YKG-E----------PKLGFKEMEEIGLSTGLPLVLHGGTGI-PTKDIQKAIPFGTAKINVNTENQI  238 (286)
T ss_pred             -------------cCC-C----------CCCCHHHHHHHHHHHCCCEEEeCCCCC-CHHHHHHHHHCCCeEEEeccHHHH
Confidence                         010 0          122688888888877899976555666 358899999999999999998865

>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]

Probab=96.87  E-value=0.0017  Score=62.09  Aligned_cols=97  Identities=22%  Similarity=0.236  Sum_probs=69.5

Q ss_pred             HHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccC-C
Q 037779          129 EENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNI-A  207 (310)
Q Consensus       129 ~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~-~  207 (310)
                      ....+++.-.+..+..++.++.|+..+...|++.|-+.....  .                .+             ++ .
T Consensus       209 d~~~i~~~~~~~lv~kGV~~~~D~~~a~~tg~~~I~vsnhgg--r----------------ql-------------D~g~  257 (360)
T COG1304         209 DGAGISKEWAGPLVLKGILAPEDAAGAGGTGADGIEVSNHGG--R----------------QL-------------DWGI  257 (360)
T ss_pred             HHhHHHHhcCCcHHHhCCCCHHHHHhhccCCceEEEEEcCCC--c----------------cc-------------cCCC
Confidence            334444433334555578899999999999999887753321  1                00             11 2


Q ss_pred             CcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          208 APYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       208 ~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      ++.+.+..+.+..  ++||  +++|||.+..|+.+++.+||++|.+|+.+..+
T Consensus       258 st~~~L~ei~~av~~~~~v--i~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~  308 (360)
T COG1304         258 STADSLPEIVEAVGDRIEV--IADGGIRSGLDVAKALALGADAVGIGRPFLYG  308 (360)
T ss_pred             ChHHHHHHHHHHhCCCeEE--EecCCCCCHHHHHHHHHhCCchhhhhHHHHHH
Confidence            3566677776653  3788  67999999999999999999999999988874

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=96.87  E-value=0.00086  Score=60.29  Aligned_cols=50  Identities=20%  Similarity=0.476  Sum_probs=40.8

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD  260 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d  260 (310)
                      ..++++.+.+...+|+  .+.|||.+.+++.++++.||+-|++||..++.++
T Consensus        61 n~~~i~~i~~~~~~~i--~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~~~~~  110 (229)
T PF00977_consen   61 NLELIKEIAKETGIPI--QVGGGIRSIEDAERLLDAGADRVVIGTEALEDPE  110 (229)
T ss_dssp             HHHHHHHHHHHSSSEE--EEESSE-SHHHHHHHHHTT-SEEEESHHHHHCCH
T ss_pred             HHHHHHHHHhcCCccE--EEeCccCcHHHHHHHHHhCCCEEEeChHHhhchh
Confidence            4677788887777899  4699999999999999999999999998887543

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>TIGR02317 prpB methylisocitrate lyase

Probab=96.86  E-value=0.043  Score=50.95  Aligned_cols=174  Identities=18%  Similarity=0.239  Sum_probs=95.3

Q ss_pred             CCCHHHHHHHHHcCCcEEEecccccchhhhcCCC---CCCCC---hHHHHHHHhhcCcceEee--ccccch----HHHHH
Q 037779           42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGV---ARMSD---PQLIKQIKSSVTIPVMAK--ARIGHF----VEAQI  109 (310)
Q Consensus        42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~---~~~~~---~~~i~~i~~~~~lPv~~k--d~i~~~----~~~~~  109 (310)
                      +.|+--|+.++.+|++++- +-.  -...+..|-   ..+.-   .+.++.|.+.+++||++-  ...+..    ..++.
T Consensus        20 ~~Da~SAri~e~aGf~Ai~-~sg--~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~   96 (285)
T TIGR02317        20 AINAMAALLAERAGFEAIY-LSG--AAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVRE   96 (285)
T ss_pred             CCCHHHHHHHHHcCCCEEE-EcH--HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHH
Confidence            4566779999999999972 210  000000011   01111   334566777889999985  233322    34678


Q ss_pred             HHHcCCCeeeecCC--------------CChhHHHHHHHh-----cCCCCcEEeecCC-----HHHH----HHHHHhCCC
Q 037779          110 LEAIGVDYVDESEV--------------LTPADEENHINK-----HNFRVPFVCGCRN-----LGES----LRRIREGAA  161 (310)
Q Consensus       110 ~~~aGad~v~~~~~--------------~~~~~~~~~~~~-----~~~~l~v~~~v~t-----~~ea----~~a~~~Gad  161 (310)
                      +.++|+.++++-+.              .+.++....++.     .+.++.+.+-+..     .+|+    +...++|||
T Consensus        97 ~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD  176 (285)
T TIGR02317        97 MEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGAD  176 (285)
T ss_pred             HHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCC
Confidence            88899999984332              233444444433     1122333332222     3333    223356777


Q ss_pred             EEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEE-EccCCCCCH-HHHH
Q 037779          162 MIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVH-FAAGGVATP-ADAA  239 (310)
Q Consensus       162 ~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~-ia~GGI~t~-~di~  239 (310)
                      .|.+.+.                                      . +.+.++.+.+..+.|+++ +.++|- +| -++.
T Consensus       177 ~vfi~g~--------------------------------------~-~~e~i~~~~~~i~~Pl~~n~~~~~~-~p~~s~~  216 (285)
T TIGR02317       177 MIFPEAL--------------------------------------T-SLEEFRQFAKAVKVPLLANMTEFGK-TPLFTAD  216 (285)
T ss_pred             EEEeCCC--------------------------------------C-CHHHHHHHHHhcCCCEEEEeccCCC-CCCCCHH
Confidence            7766532                                      0 223334444444567731 234553 34 3688


Q ss_pred             HHHHcCCCEEEEccccccC
Q 037779          240 MMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       240 ~~~~~GadgV~VGsai~~~  258 (310)
                      ++.++|++-|..|...+.+
T Consensus       217 eL~~lGv~~v~~~~~~~~a  235 (285)
T TIGR02317       217 ELREAGYKMVIYPVTAFRA  235 (285)
T ss_pred             HHHHcCCcEEEEchHHHHH
Confidence            8999999999999988874

Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.

>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases

Probab=96.85  E-value=0.28  Score=45.38  Aligned_cols=187  Identities=12%  Similarity=0.143  Sum_probs=111.3

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EV  123 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~  123 (310)
                      .+.+++++.++..|.++.  +...+ +.|.  ..-...++.+.+...+||.++ |.-.+++.+..+.++|-+.|-++ +.
T Consensus        28 avi~AAe~~~sPvIi~~~--~~~~~-~~~~--~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~i~~ai~~GftSVMiD~S~  102 (276)
T cd00947          28 AILEAAEETRSPVILQIS--EGAIK-YAGL--ELLVAMVKAAAERASVPVALHLDHGSSFELIKRAIRAGFSSVMIDGSH  102 (276)
T ss_pred             HHHHHHHHhCCCEEEEcC--cchhh-hCCH--HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCCEEEeCCCC
Confidence            347777788888875552  11111 2221  001234556666678999887 33334577788888999998743 23


Q ss_pred             CChh-------HHHHHHHhcCCCCcEEee-----------------cCCHHHHHHHH-HhCCCEEEEe-cCCCCCchHHH
Q 037779          124 LTPA-------DEENHINKHNFRVPFVCG-----------------CRNLGESLRRI-REGAAMIRTK-GEAGTGNIVEA  177 (310)
Q Consensus       124 ~~~~-------~~~~~~~~~~~~l~v~~~-----------------v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~~~  177 (310)
                      ++.+       ++.+..+..+  +.+=.+                 .+++++++.-. +.|+|.+.+. |..++..    
T Consensus       103 l~~eeNi~~t~~vv~~ah~~g--v~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y----  176 (276)
T cd00947         103 LPFEENVAKTKEVVELAHAYG--VSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAY----  176 (276)
T ss_pred             CCHHHHHHHHHHHHHHHHHcC--CeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCcccccc----
Confidence            3433       2333333332  221111                 24577777665 4688888764 4332210    


Q ss_pred             HHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          178 VRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       178 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                                    +.  .        ...-++++++.+.+..++|++.=-.+|+ ..++++++.+.|..-|=++|.+..
T Consensus       177 --------------~~--~--------~p~L~~~~L~~i~~~~~vPLVlHGgSG~-~~e~~~~ai~~Gi~KiNi~T~l~~  231 (276)
T cd00947         177 --------------KG--G--------EPKLDFDRLKEIAERVNVPLVLHGGSGI-PDEQIRKAIKLGVCKININTDLRL  231 (276)
T ss_pred             --------------CC--C--------CCccCHHHHHHHHHHhCCCEEEeCCCCC-CHHHHHHHHHcCCeEEEeChHHHH
Confidence                          00  0        0123688999998888899976656666 368899999999999999998865


Q ss_pred             CCCHHHHHHHHHHHHH
Q 037779          258 SGDPVRRARAIVQAVT  273 (310)
Q Consensus       258 ~~dp~~~~~~~~~~~~  273 (310)
                           ...+.+.+.+.
T Consensus       232 -----a~~~~~~~~~~  242 (276)
T cd00947         232 -----AFTAALREYLA  242 (276)
T ss_pred             -----HHHHHHHHHHH
Confidence                 23444444443

TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=96.85  E-value=0.026  Score=53.21  Aligned_cols=124  Identities=17%  Similarity=0.104  Sum_probs=79.6

Q ss_pred             cCcceEeeccc--cchHHHHHHHHcCCCeeeecCCCChhHHHHHHHhc-CCCCcEEeecCC-HHHHH---HHHHhC--CC
Q 037779           91 VTIPVMAKARI--GHFVEAQILEAIGVDYVDESEVLTPADEENHINKH-NFRVPFVCGCRN-LGESL---RRIREG--AA  161 (310)
Q Consensus        91 ~~lPv~~kd~i--~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~-~~~l~v~~~v~t-~~ea~---~a~~~G--ad  161 (310)
                      .++|++++.+-  .+.+.+..+.+.|.-.++. . +++++..+++++. ..++.+.+++.+ .++.+   ...+.|  +|
T Consensus        33 l~~P~~inAM~t~in~~LA~~a~~~G~~~i~h-K-~~~E~~~sfvrk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d  110 (321)
T TIGR01306        33 FKLPVVPANMQTIIDEKLAEQLAENGYFYIMH-R-FDEESRIPFIKDMQERGLFASISVGVKACEYEFVTQLAEEALTPE  110 (321)
T ss_pred             ecCcEEeeccchhhhHHHHHHHHHcCCEEEEe-c-CCHHHHHHHHHhccccccEEEEEcCCCHHHHHHHHHHHhcCCCCC
Confidence            57899887553  2345667778888877753 3 4677777777663 334556665543 33333   344667  69


Q ss_pred             EEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHH
Q 037779          162 MIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMM  241 (310)
Q Consensus       162 ~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~  241 (310)
                      +|.+.-. .+.+                                 ..-.+.++++++..+.|.+  ..|+|.|+++++.+
T Consensus       111 ~i~~D~a-hg~s---------------------------------~~~~~~i~~i~~~~p~~~v--i~GnV~t~e~a~~l  154 (321)
T TIGR01306       111 YITIDIA-HGHS---------------------------------NSVINMIKHIKTHLPDSFV--IAGNVGTPEAVREL  154 (321)
T ss_pred             EEEEeCc-cCch---------------------------------HHHHHHHHHHHHhCCCCEE--EEecCCCHHHHHHH
Confidence            8887511 1111                                 0124456666665455653  36889999999999


Q ss_pred             HHcCCCEEEEc
Q 037779          242 MQLGCDGVFVG  252 (310)
Q Consensus       242 ~~~GadgV~VG  252 (310)
                      +++|||+|.||
T Consensus       155 ~~aGad~I~V~  165 (321)
T TIGR01306       155 ENAGADATKVG  165 (321)
T ss_pred             HHcCcCEEEEC
Confidence            99999999998

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]

Probab=96.84  E-value=0.014  Score=51.95  Aligned_cols=41  Identities=34%  Similarity=0.453  Sum_probs=29.2

Q ss_pred             HHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779          211 DLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs  253 (310)
                      +-++.+++.  .++.|  =++|||+|.+|+..++++|+.-+...|
T Consensus       171 edv~lM~~~vg~~vgv--KaSGGIrt~eda~~~i~aga~RiGtSs  213 (228)
T COG0274         171 EDVKLMKETVGGRVGV--KASGGIRTAEDAKAMIEAGATRIGTSS  213 (228)
T ss_pred             HHHHHHHHHhccCcee--eccCCcCCHHHHHHHHHHhHHHhcccc
Confidence            333444443  24666  469999999999999999977666555

>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=96.80  E-value=0.019  Score=54.11  Aligned_cols=124  Identities=16%  Similarity=0.194  Sum_probs=77.9

Q ss_pred             cCcceEee--ccccchHHHHHHHHcCCCeeeecCCCChhHHHHHHHh-cC-CC--CcEEeecCC--HHHHHHHHH--hCC
Q 037779           91 VTIPVMAK--ARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINK-HN-FR--VPFVCGCRN--LGESLRRIR--EGA  160 (310)
Q Consensus        91 ~~lPv~~k--d~i~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~-~~-~~--l~v~~~v~t--~~ea~~a~~--~Ga  160 (310)
                      .++|++.-  |-++.++.+..+...|.=+++ +..+++++..++++. +. ..  +.+.+++..  .+-+....+  .|+
T Consensus        45 ~giPii~AnMdTV~~~~mA~~la~~g~~~~i-Hk~~~~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~g~  123 (346)
T PRK05096         45 SGVPIIAANMDTVGTFEMAKALASFDILTAV-HKHYSVEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSPAL  123 (346)
T ss_pred             cCCceEecCCCccccHHHHHHHHHCCCeEEE-ecCCCHHHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCCCC
Confidence            46999873  555666777777777776663 444577777777765 31 12  333333332  122333344  488


Q ss_pred             CEEEEec-CCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHH
Q 037779          161 AMIRTKG-EAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADA  238 (310)
Q Consensus       161 d~I~v~g-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di  238 (310)
                      |+|.+.- ..++.                                   .-.+.++.+++. ++++|+   +|.|.|++.+
T Consensus       124 D~iviD~AhGhs~-----------------------------------~~i~~ik~ik~~~P~~~vI---aGNV~T~e~a  165 (346)
T PRK05096        124 NFICIDVANGYSE-----------------------------------HFVQFVAKAREAWPDKTIC---AGNVVTGEMV  165 (346)
T ss_pred             CEEEEECCCCcHH-----------------------------------HHHHHHHHHHHhCCCCcEE---EecccCHHHH
Confidence            9998851 11111                                   124456666664 467774   5999999999


Q ss_pred             HHHHHcCCCEEEEcc
Q 037779          239 AMMMQLGCDGVFVGS  253 (310)
Q Consensus       239 ~~~~~~GadgV~VGs  253 (310)
                      +.++++|||+|-||=
T Consensus       166 ~~Li~aGAD~vKVGI  180 (346)
T PRK05096        166 EELILSGADIVKVGI  180 (346)
T ss_pred             HHHHHcCCCEEEEcc
Confidence            999999999997653

>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family

Probab=96.79  E-value=0.21  Score=44.45  Aligned_cols=192  Identities=17%  Similarity=0.138  Sum_probs=110.5

Q ss_pred             cCCCHHHHHHHHHcCC-cEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccc----hHHHHHHHHcCC
Q 037779           41 DVVTPEQARIAEEAGA-CAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGH----FVEAQILEAIGV  115 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga-~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~----~~~~~~~~~aGa  115 (310)
                      +..+++..+.+.+.|. +++ --|  |+=.+ +.|.   .-.+.++++++..+-||.+...-.+    .+++..+.+.+-
T Consensus         6 DsAd~~~i~~~~~~~~i~Gv-TTN--Psll~-k~g~---~~~~~~~~i~~~~~g~vs~qv~~~~~~~mi~~a~~l~~~~~   78 (213)
T TIGR00875         6 DTANVEEIKKAAELGILAGV-TTN--PSLIA-KEGR---SFWEVLKEIQEAVEGPVSAETISLDAEGMVEEAKELAKLAP   78 (213)
T ss_pred             cCCCHHHHHHHHhcCCcceE-eCC--HHHHH-hcCC---CHHHHHHHHHHhcCCcEEEEEeeCCHHHHHHHHHHHHHhCC
Confidence            4456788888888776 666 222  22222 2221   1256677887776666766543222    245566666665


Q ss_pred             Ceee-ecCCCChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHHHHHhhcceeccc
Q 037779          116 DYVD-ESEVLTPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRHVRSVMGDIRVLR  192 (310)
Q Consensus       116 d~v~-~~~~~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~l~  192 (310)
                      +.++ ++....-....+.+++.  |+.+.+ -+.|..++..+.++||+||.+. |+...                     
T Consensus        79 ~i~iKIP~T~~Gl~A~~~L~~~--Gi~v~~T~vfs~~Qa~~Aa~aGa~yispyvgRi~d---------------------  135 (213)
T TIGR00875        79 NIVVKIPMTSEGLKAVKILKKE--GIKTNVTLVFSAAQALLAAKAGATYVSPFVGRLDD---------------------  135 (213)
T ss_pred             CeEEEeCCCHHHHHHHHHHHHC--CCceeEEEecCHHHHHHHHHcCCCEEEeecchHHH---------------------
Confidence            5544 55332223455555554  444444 3789999999999999999875 43110                     


Q ss_pred             ccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc----CCCHHHHHHH
Q 037779          193 NMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK----SGDPVRRARA  267 (310)
Q Consensus       193 ~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~----~~dp~~~~~~  267 (310)
                       ...|++       ..-.++.+.++.. .+..|+   +..+.+++++.++..+|+|.+-+.-.+++    .+-....++.
T Consensus       136 -~g~dg~-------~~v~~~~~~~~~~~~~tkIl---aAS~r~~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~~~  204 (213)
T TIGR00875       136 -IGGDGM-------KLIEEVKTIFENHAPDTEVI---AASVRHPRHVLEAALIGADIATMPLDVMQQLFNHPLTDIGLER  204 (213)
T ss_pred             -cCCCHH-------HHHHHHHHHHHHcCCCCEEE---EeccCCHHHHHHHHHcCCCEEEcCHHHHHHHHcCCchHHHHHH
Confidence             001111       0012233333332 244553   47788999999999999999999887765    2233445566


Q ss_pred             HHHHHH
Q 037779          268 IVQAVT  273 (310)
Q Consensus       268 ~~~~~~  273 (310)
                      |.+-++
T Consensus       205 F~~d~~  210 (213)
T TIGR00875       205 FLKDWN  210 (213)
T ss_pred             HHHHHH
Confidence            655443

This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.

>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B

Probab=96.77  E-value=0.066  Score=48.47  Aligned_cols=172  Identities=20%  Similarity=0.264  Sum_probs=98.0

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCC---CCCCC---hHHHHHHHhhcCcceEee--ccccc-----hHHH
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGV---ARMSD---PQLIKQIKSSVTIPVMAK--ARIGH-----FVEA  107 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~---~~~~~---~~~i~~i~~~~~lPv~~k--d~i~~-----~~~~  107 (310)
                      .+.|+--|+.++++|++++..--   -...+..|-   ..+.-   .+.++.|...+++||++-  +.++.     ...+
T Consensus        15 ~~~D~~SAr~~e~~Gf~ai~~sg---~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv   91 (238)
T PF13714_consen   15 NVWDALSARLAERAGFDAIATSG---AGVAASLGYPDGGLLTLTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVARTV   91 (238)
T ss_dssp             EESSHHHHHHHHHTT-SEEEEHH---HHHHHHTTS-SSS-S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHH
T ss_pred             CCcCHHHHHHHHHcCCCEEEech---HHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHHHH
Confidence            34567789999999999972110   000011111   01111   334567777889999995  33343     2456


Q ss_pred             HHHHHcCCCeeeecCC---------CChhHHHHHHHh-----cCCCCcEEeecCCH-------HHH----HHHHHhCCCE
Q 037779          108 QILEAIGVDYVDESEV---------LTPADEENHINK-----HNFRVPFVCGCRNL-------GES----LRRIREGAAM  162 (310)
Q Consensus       108 ~~~~~aGad~v~~~~~---------~~~~~~~~~~~~-----~~~~l~v~~~v~t~-------~ea----~~a~~~Gad~  162 (310)
                      ..+.++|+.++++-+.         .++++....++.     ...++.+.+-+...       +|+    +...++|||.
T Consensus        92 ~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD~  171 (238)
T PF13714_consen   92 RELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAEAGADM  171 (238)
T ss_dssp             HHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-SE
T ss_pred             HHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHHcCCCE
Confidence            7888899999984322         245566555543     23456666655441       232    2334689998


Q ss_pred             EEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHH
Q 037779          163 IRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM  242 (310)
Q Consensus       163 I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~  242 (310)
                      |.+.+.                                      ....+ ++.+.+..+.|+.+...++   .-++.++.
T Consensus       172 ifi~~~--------------------------------------~~~~~-i~~~~~~~~~Pl~v~~~~~---~~~~~eL~  209 (238)
T PF13714_consen  172 IFIPGL--------------------------------------QSEEE-IERIVKAVDGPLNVNPGPG---TLSAEELA  209 (238)
T ss_dssp             EEETTS--------------------------------------SSHHH-HHHHHHHHSSEEEEETTSS---SS-HHHHH
T ss_pred             EEeCCC--------------------------------------CCHHH-HHHHHHhcCCCEEEEcCCC---CCCHHHHH
Confidence            888643                                      11122 3344333368987665322   26788899


Q ss_pred             HcCCCEEEEcccccc
Q 037779          243 QLGCDGVFVGSGVFK  257 (310)
Q Consensus       243 ~~GadgV~VGsai~~  257 (310)
                      ++|+.-|..|..++.
T Consensus       210 ~lGv~~v~~~~~~~~  224 (238)
T PF13714_consen  210 ELGVKRVSYGNSLLR  224 (238)
T ss_dssp             HTTESEEEETSHHHH
T ss_pred             HCCCcEEEEcHHHHH
Confidence            999999999998886

...

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=96.77  E-value=0.02  Score=53.98  Aligned_cols=123  Identities=16%  Similarity=0.174  Sum_probs=75.9

Q ss_pred             cCcceEee--ccccchHHHHHHHHcCCCeeeecCCCChhHHHHHHHh-cC-CC--CcEEeecCC--HHHHHHHHHh--CC
Q 037779           91 VTIPVMAK--ARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINK-HN-FR--VPFVCGCRN--LGESLRRIRE--GA  160 (310)
Q Consensus        91 ~~lPv~~k--d~i~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~-~~-~~--l~v~~~v~t--~~ea~~a~~~--Ga  160 (310)
                      .++||+.-  |-++.++.+..+...|.=+++ +..+++++..++++. +. ..  +.+.++++.  .+-+....++  ++
T Consensus        44 ~~iPii~AnMdtv~~~~mA~~la~~g~~~~i-Hk~~~~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~  122 (343)
T TIGR01305        44 SGVPIIAANMDTVGTFEMAAALSQHSIFTAI-HKHYSVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQL  122 (343)
T ss_pred             eCCceEecCCCcccCHHHHHHHHHCCCeEEE-eeCCCHHHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCC
Confidence            47899873  555666677777777766653 444577777777755 21 12  233333322  2233444455  48


Q ss_pred             CEEEEe-cCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHH
Q 037779          161 AMIRTK-GEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADA  238 (310)
Q Consensus       161 d~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di  238 (310)
                      |+|.+. ...++.                                   .-.+.++++++. .+.+|+   .|.|-|++++
T Consensus       123 d~iviD~AhGhs~-----------------------------------~~i~~ik~ir~~~p~~~vi---aGNV~T~e~a  164 (343)
T TIGR01305       123 KFICLDVANGYSE-----------------------------------HFVEFVKLVREAFPEHTIM---AGNVVTGEMV  164 (343)
T ss_pred             CEEEEECCCCcHH-----------------------------------HHHHHHHHHHhhCCCCeEE---EecccCHHHH
Confidence            999885 111211                                   123455666654 344552   5779999999


Q ss_pred             HHHHHcCCCEEEEc
Q 037779          239 AMMMQLGCDGVFVG  252 (310)
Q Consensus       239 ~~~~~~GadgV~VG  252 (310)
                      +.++++|||+|.||
T Consensus       165 ~~Li~aGAD~ikVg  178 (343)
T TIGR01305       165 EELILSGADIVKVG  178 (343)
T ss_pred             HHHHHcCCCEEEEc
Confidence            99999999999988

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed

Probab=96.77  E-value=0.012  Score=56.12  Aligned_cols=49  Identities=24%  Similarity=0.504  Sum_probs=35.9

Q ss_pred             HHHHHHHhcCCCCEEEEccCCCCCHHH----HHHHHHcCC--CEEEEccccccCCCH
Q 037779          211 DLVMQTKQLGRLPVVHFAAGGVATPAD----AAMMMQLGC--DGVFVGSGVFKSGDP  261 (310)
Q Consensus       211 ~l~~~i~~~~~iPVv~ia~GGI~t~~d----i~~~~~~Ga--dgV~VGsai~~~~dp  261 (310)
                      +..+.+.+..++|++ +++||. +.+.    ++.+++.|+  .||++|+++++...+
T Consensus       231 ~~f~~~~~a~~~P~v-vlsgG~-~~~~f~~~l~~A~~aGa~f~Gvl~GRniwq~~v~  285 (340)
T PRK12858        231 KLFREQSDATDLPFI-FLSAGV-SPELFRRTLEFACEAGADFSGVLCGRATWQDGIE  285 (340)
T ss_pred             HHHHHHHhhCCCCEE-EECCCC-CHHHHHHHHHHHHHcCCCccchhhhHHHHhhhhc
Confidence            344555555789998 579998 4554    455667899  999999999986543

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=96.76  E-value=0.021  Score=54.04  Aligned_cols=86  Identities=20%  Similarity=0.297  Sum_probs=59.8

Q ss_pred             HHHHHHHhhcCcceEeecc-c-cchHHHHHHHHcCCCeeeecCC----------------------------CChhHHHH
Q 037779           82 QLIKQIKSSVTIPVMAKAR-I-GHFVEAQILEAIGVDYVDESEV----------------------------LTPADEEN  131 (310)
Q Consensus        82 ~~i~~i~~~~~lPv~~kd~-i-~~~~~~~~~~~aGad~v~~~~~----------------------------~~~~~~~~  131 (310)
                      +.++.+++.+++||++|.. . .+.+.++.+.++|+|+|..+-.                            .+....+.
T Consensus       168 ~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~  247 (326)
T cd02811         168 ERIEELVKALSVPVIVKEVGFGISRETAKRLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLL  247 (326)
T ss_pred             HHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHH
Confidence            6788889889999999853 2 2446788999999999873210                            01112222


Q ss_pred             HHHhcCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEec
Q 037779          132 HINKHNFRVPFVC--GCRNLGESLRRIREGAAMIRTKG  167 (310)
Q Consensus       132 ~~~~~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~g  167 (310)
                      .+.+...++++++  ++++..++.+++.+|||.+.+..
T Consensus       248 ~~~~~~~~ipIiasGGIr~~~dv~kal~lGAd~V~i~~  285 (326)
T cd02811         248 EVRSALPDLPLIASGGIRNGLDIAKALALGADLVGMAG  285 (326)
T ss_pred             HHHHHcCCCcEEEECCCCCHHHHHHHHHhCCCEEEEcH
Confidence            3333222567666  48999999999999999999863

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>PRK01362 putative translaldolase; Provisional

Probab=96.75  E-value=0.21  Score=44.44  Aligned_cols=192  Identities=19%  Similarity=0.146  Sum_probs=108.8

Q ss_pred             cCCCHHHHHHHHHcCC-cEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccc----hHHHHHHHHcCC
Q 037779           41 DVVTPEQARIAEEAGA-CAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGH----FVEAQILEAIGV  115 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga-~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~----~~~~~~~~~aGa  115 (310)
                      +..+.+..+.+.+.|. +++ --|  |+-.+ +.|.   .-.+.++++++..+-||.+...-.+    .+++..+.+.+-
T Consensus         6 DsA~~~ei~~~~~~~~i~Gv-TTN--Psll~-k~g~---~~~~~~~~i~~~i~g~vs~qv~~~d~~~m~~~a~~l~~~~~   78 (214)
T PRK01362          6 DTANVEEIKEANELGVLDGV-TTN--PSLIA-KEGR---DFEEVIKEICSIVDGPVSAEVIALDAEGMIKEGRELAKIAP   78 (214)
T ss_pred             ecCCHHHHHHHHhCCCcceE-cCC--HHHHH-hcCC---CHHHHHHHHHHhcCCCEEEEEeeCCHHHHHHHHHHHHHhCC
Confidence            3456677777777665 565 222  22222 2221   1245677888777666766533222    245566666665


Q ss_pred             Ceee-ecCCCChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHHHHHhhcceeccc
Q 037779          116 DYVD-ESEVLTPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRHVRSVMGDIRVLR  192 (310)
Q Consensus       116 d~v~-~~~~~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~l~  192 (310)
                      ..++ ++....--...+.+++.  |+.+.+ -+.|..++..+.++||+||.+. |+...                     
T Consensus        79 ~i~iKIP~T~~G~~a~~~L~~~--Gi~v~~T~vfs~~Qa~~Aa~aGa~yispyvgRi~d---------------------  135 (214)
T PRK01362         79 NVVVKIPMTPEGLKAVKALSKE--GIKTNVTLIFSANQALLAAKAGATYVSPFVGRLDD---------------------  135 (214)
T ss_pred             CEEEEeCCCHHHHHHHHHHHHC--CCceEEeeecCHHHHHHHHhcCCcEEEeecchHhh---------------------
Confidence            5444 55332223445555554  444443 3789999999999999999875 44210                     


Q ss_pred             ccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc----CCCHHHHHHH
Q 037779          193 NMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK----SGDPVRRARA  267 (310)
Q Consensus       193 ~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~----~~dp~~~~~~  267 (310)
                       ...|++       ..-.++.+.+.+.. +.-|   .+..+.++.++.++..+|+|.+-++-.+++    .+-....++.
T Consensus       136 -~g~dg~-------~~i~~~~~~~~~~~~~tki---laAS~r~~~~v~~~~~~G~d~iTi~~~vl~~l~~~p~t~~~~~~  204 (214)
T PRK01362        136 -IGTDGM-------ELIEDIREIYDNYGFDTEI---IAASVRHPMHVLEAALAGADIATIPYKVIKQLFKHPLTDKGLEK  204 (214)
T ss_pred             -cCCCHH-------HHHHHHHHHHHHcCCCcEE---EEeecCCHHHHHHHHHcCCCEEecCHHHHHHHHcCCchHHHHHH
Confidence             011111       00122333333322 2233   257788999999999999999999876665    3344556666


Q ss_pred             HHHHHH
Q 037779          268 IVQAVT  273 (310)
Q Consensus       268 ~~~~~~  273 (310)
                      |.+-+.
T Consensus       205 F~~dw~  210 (214)
T PRK01362        205 FLADWE  210 (214)
T ss_pred             HHHHHH
Confidence            665544

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=96.74  E-value=0.028  Score=54.60  Aligned_cols=40  Identities=30%  Similarity=0.458  Sum_probs=32.7

Q ss_pred             HHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEc
Q 037779          210 YDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG  252 (310)
Q Consensus       210 ~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VG  252 (310)
                      .++++++++. .+++++   .|+|.|++++..++++|||+|.+|
T Consensus       182 ~~~v~~ik~~~p~~~vi---~g~V~T~e~a~~l~~aGaD~I~vG  222 (404)
T PRK06843        182 IELVKKIKTKYPNLDLI---AGNIVTKEAALDLISVGADCLKVG  222 (404)
T ss_pred             HHHHHHHHhhCCCCcEE---EEecCCHHHHHHHHHcCCCEEEEC
Confidence            4567777764 356774   499999999999999999999987

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=96.74  E-value=0.042  Score=52.00  Aligned_cols=123  Identities=19%  Similarity=0.162  Sum_probs=79.1

Q ss_pred             cCcceEeecccc--chHHHHHHHHcCCCeeeecCCCChhHHHHHHHhcC-CCCcEEeecCC-H---HHHHHHHHhCC--C
Q 037779           91 VTIPVMAKARIG--HFVEAQILEAIGVDYVDESEVLTPADEENHINKHN-FRVPFVCGCRN-L---GESLRRIREGA--A  161 (310)
Q Consensus        91 ~~lPv~~kd~i~--~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~-~~l~v~~~v~t-~---~ea~~a~~~Ga--d  161 (310)
                      ...|++++..-.  +.+.++.+.+.|.-.++..  +++++...+.++.. .++.+.+.+.+ .   +++....++|+  |
T Consensus        36 l~~P~~inAM~t~iN~~LA~~a~~~G~~~~~~k--~~~e~~~~~~r~~~~~~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d  113 (326)
T PRK05458         36 FKLPVVPANMQTIIDEKIAEWLAENGYFYIMHR--FDPEARIPFIKDMHEQGLIASISVGVKDDEYDFVDQLAAEGLTPE  113 (326)
T ss_pred             ecCcEEEecccchhHHHHHHHHHHcCCEEEEec--CCHHHHHHHHHhccccccEEEEEecCCHHHHHHHHHHHhcCCCCC
Confidence            467998875532  3356677777887777533  36666666665532 34555455433 3   45556667754  9


Q ss_pred             EEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHH
Q 037779          162 MIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAM  240 (310)
Q Consensus       162 ~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~  240 (310)
                      +|.+....  ++.                                ..-.++++++++.. ++||+   .|.|.|++++..
T Consensus       114 ~i~iD~a~--gh~--------------------------------~~~~e~I~~ir~~~p~~~vi---~g~V~t~e~a~~  156 (326)
T PRK05458        114 YITIDIAH--GHS--------------------------------DSVINMIQHIKKHLPETFVI---AGNVGTPEAVRE  156 (326)
T ss_pred             EEEEECCC--Cch--------------------------------HHHHHHHHHHHhhCCCCeEE---EEecCCHHHHHH
Confidence            99885211  110                                11355677777753 46774   477999999999


Q ss_pred             HHHcCCCEEEEc
Q 037779          241 MMQLGCDGVFVG  252 (310)
Q Consensus       241 ~~~~GadgV~VG  252 (310)
                      +.++|+|++.||
T Consensus       157 l~~aGad~i~vg  168 (326)
T PRK05458        157 LENAGADATKVG  168 (326)
T ss_pred             HHHcCcCEEEEC
Confidence            999999999988

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=96.73  E-value=0.0071  Score=55.35  Aligned_cols=46  Identities=22%  Similarity=0.226  Sum_probs=39.0

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      +.++++.+.+ .++||  -+.|||.+ +++.+++++||+-|++||..++.
T Consensus        72 n~~~i~~i~~-~~~~v--qvGGGIR~-e~i~~~l~~Ga~rViigT~Av~~  117 (262)
T PLN02446         72 LAAALEALRA-YPGGL--QVGGGVNS-ENAMSYLDAGASHVIVTSYVFRD  117 (262)
T ss_pred             cHHHHHHHHh-CCCCE--EEeCCccH-HHHHHHHHcCCCEEEEchHHHhC
Confidence            4667777777 66888  56999985 99999999999999999988873

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=96.72  E-value=0.0067  Score=54.62  Aligned_cols=85  Identities=16%  Similarity=0.199  Sum_probs=63.3

Q ss_pred             cccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC-cceEeeccccchH
Q 037779           27 KVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT-IPVMAKARIGHFV  105 (310)
Q Consensus        27 ~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~-lPv~~kd~i~~~~  105 (310)
                      ..|+.+++|.|. .+....+.++.++++|+++|.+      +.+.. |. ...+.+.|+++++.++ +||+.+..+.+++
T Consensus       134 ~~PVsvKiR~~~-~~~~~~~~a~~l~~aGad~i~V------d~~~~-g~-~~a~~~~I~~i~~~~~~ipIIgNGgI~s~e  204 (231)
T TIGR00736       134 NKPIFVKIRGNC-IPLDELIDALNLVDDGFDGIHV------DAMYP-GK-PYADMDLLKILSEEFNDKIIIGNNSIDDIE  204 (231)
T ss_pred             CCcEEEEeCCCC-CcchHHHHHHHHHHcCCCEEEE------eeCCC-CC-chhhHHHHHHHHHhcCCCcEEEECCcCCHH
Confidence            468889999876 2223368999999999999843      22222 21 1135788999999984 9999999988888


Q ss_pred             HHHHHHHcCCCeeee
Q 037779          106 EAQILEAIGVDYVDE  120 (310)
Q Consensus       106 ~~~~~~~aGad~v~~  120 (310)
                      ++..+..+|||.|-+
T Consensus       205 da~e~l~~GAd~Vmv  219 (231)
T TIGR00736       205 SAKEMLKAGADFVSV  219 (231)
T ss_pred             HHHHHHHhCCCeEEE
Confidence            887777799999863

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=96.70  E-value=0.021  Score=54.53  Aligned_cols=169  Identities=20%  Similarity=0.335  Sum_probs=94.8

Q ss_pred             cCcceEee--ccccchHHHHHHHHcCCCeeeecCCCChhHHHHHHHh-----------cCCCCcEEeec--CC--HHHHH
Q 037779           91 VTIPVMAK--ARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINK-----------HNFRVPFVCGC--RN--LGESL  153 (310)
Q Consensus        91 ~~lPv~~k--d~i~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~-----------~~~~l~v~~~v--~t--~~ea~  153 (310)
                      .++|++--  |-+...+.+..+...|.=.|+.. ..++++..+.+++           ...++.+.+.+  +.  .+-+.
T Consensus        36 l~iPivsa~MDtVte~~mAiama~~Gglgvih~-~~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~  114 (352)
T PF00478_consen   36 LKIPIVSAPMDTVTESEMAIAMARLGGLGVIHR-NMSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAE  114 (352)
T ss_dssp             ESSSEEE-SSTTTSSHHHHHHHHHTTSEEEEES-SSCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHH
T ss_pred             ecCceEecCccccchHHHHHHHHHhcCCceecC-CCCHHHHHHHHhhhccccccccccccccceEEEEecCCHHHHHHHH
Confidence            47898874  44444556666666777666432 2344444333322           11235555544  32  44555


Q ss_pred             HHHHhCCCEEEEecC-CCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCC
Q 037779          154 RRIREGAAMIRTKGE-AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGG  231 (310)
Q Consensus       154 ~a~~~Gad~I~v~g~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GG  231 (310)
                      ...++|+|++.+... .++.+                                   -.+.++.+++. .++||+   .|.
T Consensus       115 ~L~~agvD~ivID~a~g~s~~-----------------------------------~~~~ik~ik~~~~~~~vi---aGN  156 (352)
T PF00478_consen  115 ALVEAGVDVIVIDSAHGHSEH-----------------------------------VIDMIKKIKKKFPDVPVI---AGN  156 (352)
T ss_dssp             HHHHTT-SEEEEE-SSTTSHH-----------------------------------HHHHHHHHHHHSTTSEEE---EEE
T ss_pred             HHHHcCCCEEEccccCccHHH-----------------------------------HHHHHHHHHHhCCCceEE---ecc
Confidence            666789999988632 11111                                   13345666654 457884   599


Q ss_pred             CCCHHHHHHHHHcCCCEEEEc---ccccc------CCCH-HHHHHHHHHHHHcCCCh-----------hhHHhhhhccCC
Q 037779          232 VATPADAAMMMQLGCDGVFVG---SGVFK------SGDP-VRRARAIVQAVTNYSDP-----------DVLAEVSCGLGE  290 (310)
Q Consensus       232 I~t~~di~~~~~~GadgV~VG---sai~~------~~dp-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~  290 (310)
                      |.|.+.+..++++|||+|-||   ..++.      -.-| ...+.+..+..+.+.-|           ++..-++...-.
T Consensus       157 V~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~  236 (352)
T PF00478_consen  157 VVTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADA  236 (352)
T ss_dssp             E-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SE
T ss_pred             cCCHHHHHHHHHcCCCEEEEeccCCcccccccccccCCcHHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccc
Confidence            999999999999999999998   22332      1223 23345555555554333           445666666666


Q ss_pred             ceeccccc
Q 037779          291 AMVGIDLN  298 (310)
Q Consensus       291 ~~~~~~~~  298 (310)
                      .|+|.-|.
T Consensus       237 VMlG~llA  244 (352)
T PF00478_consen  237 VMLGSLLA  244 (352)
T ss_dssp             EEESTTTT
T ss_pred             eeechhhc
Confidence            67776554

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=96.68  E-value=0.11  Score=45.21  Aligned_cols=102  Identities=20%  Similarity=0.229  Sum_probs=69.5

Q ss_pred             HHHHHHHHcCCCeeeec-CCCChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHH
Q 037779          105 VEAQILEAIGVDYVDES-EVLTPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVR  182 (310)
Q Consensus       105 ~~~~~~~~aGad~v~~~-~~~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~  182 (310)
                      ..++.+.+.|++.+-.+ ......+.++.+++..+++.+.+ .++|.+++..+.+.|++++..-+  .            
T Consensus        20 ~~~~~l~~~G~~~vev~~~~~~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~--~------------   85 (190)
T cd00452          20 ALAEALIEGGIRAIEITLRTPGALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPG--L------------   85 (190)
T ss_pred             HHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCC--C------------
Confidence            45677888999998643 22233445566665444566666 47889999999999999985321  0            


Q ss_pred             HhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEE
Q 037779          183 SVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFV  251 (310)
Q Consensus       183 ~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~V  251 (310)
                                                +.++....++ ..+|+  +  =|+.|++++.++.++|||.+.+
T Consensus        86 --------------------------~~~~~~~~~~-~~~~~--i--~gv~t~~e~~~A~~~Gad~i~~  123 (190)
T cd00452          86 --------------------------DPEVVKAANR-AGIPL--L--PGVATPTEIMQALELGADIVKL  123 (190)
T ss_pred             --------------------------CHHHHHHHHH-cCCcE--E--CCcCCHHHHHHHHHCCCCEEEE
Confidence                                      1223333333 34677  3  3788999999999999999997

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]

Probab=96.63  E-value=0.16  Score=46.89  Aligned_cols=176  Identities=20%  Similarity=0.213  Sum_probs=97.3

Q ss_pred             ccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCC------CCCCChHHHHHHHhhcCcceEeec--cccc----hHHH
Q 037779           40 MDVVTPEQARIAEEAGACAVMALERVPADIRAQGGV------ARMSDPQLIKQIKSSVTIPVMAKA--RIGH----FVEA  107 (310)
Q Consensus        40 ~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~------~~~~~~~~i~~i~~~~~lPv~~kd--~i~~----~~~~  107 (310)
                      ..+-|+--|+.++++|++++ .+-.  ..+...-|-      .+..-.+.+++|.+.+++||++..  +.|.    ...+
T Consensus        23 pg~~d~~sA~la~~aGF~al-~~sg--~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV   99 (289)
T COG2513          23 PGAWDAGSALLAERAGFKAL-YLSG--AGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTV   99 (289)
T ss_pred             cCCcCHHHHHHHHHcCCeEE-Eecc--HHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHH
Confidence            34556778999999999998 3310  001010011      011123456778888999999952  3332    1355


Q ss_pred             HHHHHcCCCeeeecCC--------------CChhHHHHHHHh---cCCCCcEEeecCC-------HHH----HHHHHHhC
Q 037779          108 QILEAIGVDYVDESEV--------------LTPADEENHINK---HNFRVPFVCGCRN-------LGE----SLRRIREG  159 (310)
Q Consensus       108 ~~~~~aGad~v~~~~~--------------~~~~~~~~~~~~---~~~~l~v~~~v~t-------~~e----a~~a~~~G  159 (310)
                      ..++++|+.++++-+.              .++++....++.   ...+..+++..+|       .++    +....++|
T Consensus       100 ~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAG  179 (289)
T COG2513         100 RELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVEAG  179 (289)
T ss_pred             HHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHHcC
Confidence            6788899999884222              223344444433   1111222222222       112    12233556


Q ss_pred             CCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCC--CCEEEEccCCCCCHHH
Q 037779          160 AAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGR--LPVVHFAAGGVATPAD  237 (310)
Q Consensus       160 ad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~--iPVv~ia~GGI~t~~d  237 (310)
                      ||.|...+                                      +. +.+.++.+.+..+  +|+.+ .++|-.-.-.
T Consensus       180 AD~if~~a--------------------------------------l~-~~e~i~~f~~av~~pl~~N~-t~~g~tp~~~  219 (289)
T COG2513         180 ADAIFPEA--------------------------------------LT-DLEEIRAFAEAVPVPLPANI-TEFGKTPLLT  219 (289)
T ss_pred             CcEEcccc--------------------------------------CC-CHHHHHHHHHhcCCCeeeEe-eccCCCCCcC
Confidence            66655431                                      11 2444555555444  67764 4666543456


Q ss_pred             HHHHHHcCCCEEEEccccccC
Q 037779          238 AAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       238 i~~~~~~GadgV~VGsai~~~  258 (310)
                      +.++.++|++-|+.|...++.
T Consensus       220 ~~~L~~~Gv~~V~~~~~~~ra  240 (289)
T COG2513         220 VAELAELGVKRVSYGLTAFRA  240 (289)
T ss_pred             HHHHHhcCceEEEECcHHHHH
Confidence            788889999999999988874

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=96.56  E-value=0.19  Score=46.87  Aligned_cols=174  Identities=15%  Similarity=0.218  Sum_probs=96.3

Q ss_pred             CCCHHHHHHHHHcCCcEEEecccccchhh-hcCCC---CCCCC---hHHHHHHHhhcCcceEee--ccccch----HHHH
Q 037779           42 VVTPEQARIAEEAGACAVMALERVPADIR-AQGGV---ARMSD---PQLIKQIKSSVTIPVMAK--ARIGHF----VEAQ  108 (310)
Q Consensus        42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r-~~~G~---~~~~~---~~~i~~i~~~~~lPv~~k--d~i~~~----~~~~  108 (310)
                      +.|+--|+.++.+|++++..--   -... +-.|.   ..+.-   .+.+++|.+.+++||++-  .+.+..    ..++
T Consensus        24 ~~Da~SAri~e~~Gf~ai~~Sg---~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~  100 (292)
T PRK11320         24 TINAYHALLAERAGFKAIYLSG---GGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVK  100 (292)
T ss_pred             CCCHHHHHHHHHcCCCEEEeCH---HHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHH
Confidence            4566779999999999972110   0011 00011   01111   334566777889999985  233322    3467


Q ss_pred             HHHHcCCCeeeecCC--------------CChhHHHHHHHh-----cCCCCcEEeecCC-----HHHH----HHHHHhCC
Q 037779          109 ILEAIGVDYVDESEV--------------LTPADEENHINK-----HNFRVPFVCGCRN-----LGES----LRRIREGA  160 (310)
Q Consensus       109 ~~~~aGad~v~~~~~--------------~~~~~~~~~~~~-----~~~~l~v~~~v~t-----~~ea----~~a~~~Ga  160 (310)
                      .+.++||.+|++-+.              .+.++....++.     .+.++.+++-+..     .+|+    +...++||
T Consensus       101 ~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGA  180 (292)
T PRK11320        101 SMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGA  180 (292)
T ss_pred             HHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCC
Confidence            888899999984332              233444444432     1223333333322     3333    23345677


Q ss_pred             CEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEE-EccCCCCCH-HHH
Q 037779          161 AMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVH-FAAGGVATP-ADA  238 (310)
Q Consensus       161 d~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~-ia~GGI~t~-~di  238 (310)
                      |.|.+.+.                                       .+.+.++.+.+..+.|+++ +.++|- +| -.+
T Consensus       181 D~ifi~~~---------------------------------------~~~~~i~~~~~~~~~Pl~~n~~~~~~-~p~~s~  220 (292)
T PRK11320        181 DMIFPEAM---------------------------------------TELEMYRRFADAVKVPILANITEFGA-TPLFTT  220 (292)
T ss_pred             CEEEecCC---------------------------------------CCHHHHHHHHHhcCCCEEEEeccCCC-CCCCCH
Confidence            77776532                                       0233344444444568732 234553 33 368


Q ss_pred             HHHHHcCCCEEEEccccccC
Q 037779          239 AMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       239 ~~~~~~GadgV~VGsai~~~  258 (310)
                      .++.++|++-|..|...+.+
T Consensus       221 ~~L~~lGv~~v~~~~~~~~a  240 (292)
T PRK11320        221 EELASAGVAMVLYPLSAFRA  240 (292)
T ss_pred             HHHHHcCCcEEEEChHHHHH
Confidence            88899999999999988763

>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate

Probab=96.55  E-value=0.25  Score=46.04  Aligned_cols=190  Identities=13%  Similarity=0.184  Sum_probs=112.3

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EV  123 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~  123 (310)
                      .+.+++++.+...|.++.  +...++++ ..  .-...++.+.+..++||.++ |....++.+..+..+|.+.|-++ +.
T Consensus        32 avi~AAe~~~sPvIlq~~--~~~~~~~~-~~--~~~~~~~~~a~~~~vPValHLDH~~~~e~i~~ai~~GftSVM~DgS~  106 (287)
T PF01116_consen   32 AVIEAAEELNSPVILQIS--PSEVKYMG-LE--YLAAMVKAAAEEASVPVALHLDHGKDFEDIKRAIDAGFTSVMIDGSA  106 (287)
T ss_dssp             HHHHHHHHTTS-EEEEEE--HHHHHHHH-HH--HHHHHHHHHHHHSTSEEEEEEEEE-SHHHHHHHHHHTSSEEEEE-TT
T ss_pred             HHHHHHHHhCCCEEEEcc--hhhhhhhh-HH--HHHHHHHHHHHHcCCCEEeecccCCCHHHHHHHHHhCcccccccCCc
Confidence            357788888888876652  22222221 10  00335667777789999886 44445677888899999998733 33


Q ss_pred             CChh-------HHHHHHHhcCCCCcEEee--------------------cCCHHHHHHHH-HhCCCEEEEe-cCCCCCch
Q 037779          124 LTPA-------DEENHINKHNFRVPFVCG--------------------CRNLGESLRRI-REGAAMIRTK-GEAGTGNI  174 (310)
Q Consensus       124 ~~~~-------~~~~~~~~~~~~l~v~~~--------------------v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~  174 (310)
                      ++.+       ++.+.+++.+  +.+=.+                    .++++++++-. +.|+|.+.+. |..++.. 
T Consensus       107 l~~eeNi~~T~~vv~~ah~~g--v~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiGt~HG~y-  183 (287)
T PF01116_consen  107 LPFEENIAITREVVEYAHAYG--VSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIGTAHGMY-  183 (287)
T ss_dssp             S-HHHHHHHHHHHHHHHHHTT---EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SSSBSSSB-
T ss_pred             CCHHHHHHHHHHHHHhhhhhC--CEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecCcccccc-
Confidence            3433       3333444333  211111                    13677777654 6799988775 4433211 


Q ss_pred             HHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779          175 VEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       175 ~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs  253 (310)
                                       +.. .        ...-++++++.+.+.. ++|+|.=-++|+ ..++++++.+.|..-|=++|
T Consensus       184 -----------------~~~-~--------~p~Ld~~~L~~I~~~~~~iPLVlHGgSG~-~~e~~~~ai~~Gi~KiNi~T  236 (287)
T PF01116_consen  184 -----------------KGG-K--------KPKLDFDRLKEIREAVPDIPLVLHGGSGL-PDEQIRKAIKNGISKINIGT  236 (287)
T ss_dssp             -----------------SSS-S--------STC--HHHHHHHHHHHHTSEEEESSCTTS--HHHHHHHHHTTEEEEEESH
T ss_pred             -----------------CCC-C--------CcccCHHHHHHHHHhcCCCCEEEECCCCC-CHHHHHHHHHcCceEEEEeh
Confidence                             100 0        0122688999999987 999976555666 36799999999999999999


Q ss_pred             ccccCCCHHHHHHHHHHHHHcC
Q 037779          254 GVFKSGDPVRRARAIVQAVTNY  275 (310)
Q Consensus       254 ai~~~~dp~~~~~~~~~~~~~~  275 (310)
                      .+..     ...+.+++.+...
T Consensus       237 ~~~~-----a~~~~~~~~~~~~  253 (287)
T PF01116_consen  237 ELRR-----AFTDALREYLAEN  253 (287)
T ss_dssp             HHHH-----HHHHHHHHHHHHS
T ss_pred             HHHH-----HHHHHHHHHHHhC
Confidence            8875     2344444444443

There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=96.54  E-value=0.034  Score=55.65  Aligned_cols=112  Identities=22%  Similarity=0.263  Sum_probs=75.4

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeeec--
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDES--  121 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~~--  121 (310)
                      .+.++.+.++|++.| .+     |..  +|.. ....+.++++++.. ++||++++. .+.+.++.+.++|||+|...  
T Consensus       243 ~~~~~~l~~ag~d~i-~i-----d~a--~G~s-~~~~~~i~~ik~~~~~~~v~aG~V-~t~~~a~~~~~aGad~I~vg~g  312 (495)
T PTZ00314        243 IERAAALIEAGVDVL-VV-----DSS--QGNS-IYQIDMIKKLKSNYPHVDIIAGNV-VTADQAKNLIDAGADGLRIGMG  312 (495)
T ss_pred             HHHHHHHHHCCCCEE-EE-----ecC--CCCc-hHHHHHHHHHHhhCCCceEEECCc-CCHHHHHHHHHcCCCEEEECCc
Confidence            478999999999998 34     221  2211 11156889999885 788888543 34568889999999998521  


Q ss_pred             CC------------CChhHHHHHHHh--cCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779          122 EV------------LTPADEENHINK--HNFRVPFVC--GCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       122 ~~------------~~~~~~~~~~~~--~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                      ..            .+....+..+.+  +..++++++  ++.|..|+.+|+.+||+.|.+.
T Consensus       313 ~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G  373 (495)
T PTZ00314        313 SGSICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLG  373 (495)
T ss_pred             CCcccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence            10            011111112221  235689999  7999999999999999999875

>PRK00042 tpiA triosephosphate isomerase; Provisional

Probab=96.54  E-value=0.047  Score=49.77  Aligned_cols=43  Identities=28%  Similarity=0.502  Sum_probs=34.4

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHHH
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~dp~~~~~  266 (310)
                      +++|  +..|+| +++++.+++. .++||++||++-++.+++...++
T Consensus       203 ~~~I--lYGGSV-~~~N~~~l~~~~~vDG~LVG~Asl~~~~f~~ii~  246 (250)
T PRK00042        203 KVRI--LYGGSV-KPDNAAELMAQPDIDGALVGGASLKAEDFLAIVK  246 (250)
T ss_pred             CceE--EEcCCC-CHHHHHHHhcCCCCCEEEEeeeeechHHHHHHHH
Confidence            4678  679999 5888888775 69999999999998777665544

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=96.50  E-value=0.018  Score=54.42  Aligned_cols=88  Identities=25%  Similarity=0.294  Sum_probs=64.8

Q ss_pred             ccceeeecCCccccCCC-HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHH
Q 037779           28 VGLAQMLRGGVIMDVVT-PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVE  106 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~~~-~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~  106 (310)
                      .|+..++|.|+-.+..+ .++++.++++|+++|....+. .+.. +.|.   .+.+.++++++.+++||+.+..+.+.++
T Consensus       134 ~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt-~~~~-~~G~---a~~~~i~~ik~~~~iPVI~nGgI~s~~d  208 (321)
T PRK10415        134 VPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRT-RACL-FNGE---AEYDSIRAVKQKVSIPVIANGDITDPLK  208 (321)
T ss_pred             CceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCc-cccc-cCCC---cChHHHHHHHHhcCCcEEEeCCCCCHHH
Confidence            47888999988655434 488999999999998433111 1111 2232   3578999999999999999999987778


Q ss_pred             HHHHHH-cCCCeeee
Q 037779          107 AQILEA-IGVDYVDE  120 (310)
Q Consensus       107 ~~~~~~-aGad~v~~  120 (310)
                      ++.+.+ .|+|.|.+
T Consensus       209 a~~~l~~~gadgVmi  223 (321)
T PRK10415        209 ARAVLDYTGADALMI  223 (321)
T ss_pred             HHHHHhccCCCEEEE
Confidence            776665 79999974

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=96.49  E-value=0.054  Score=49.94  Aligned_cols=140  Identities=17%  Similarity=0.161  Sum_probs=95.8

Q ss_pred             cceeeeecceEEEEeccCCCccccccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHH
Q 037779            4 TGVVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQL   83 (310)
Q Consensus         4 ~~~~~~~~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~   83 (310)
                      -||--..++.-|-|+|++-    ..|+.-+.|.|+      ...|+.+++.|++.| +-    |+.       +.+..+.
T Consensus        48 ggv~R~~~p~~I~~I~~~V----~iPVig~~kigh------~~Ea~~L~~~GvDiI-De----Te~-------lrPade~  105 (287)
T TIGR00343        48 GGVARMSDPKMIKEIMDAV----SIPVMAKVRIGH------FVEAQILEALGVDYI-DE----SEV-------LTPADWT  105 (287)
T ss_pred             CCeeecCCHHHHHHHHHhC----CCCEEEEeeccH------HHHHHHHHHcCCCEE-Ec----cCC-------CCcHHHH
Confidence            4555556666677777642    467777777765      778999999999998 42    221       1112456


Q ss_pred             HHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec------C---------------------------------CC
Q 037779           84 IKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES------E---------------------------------VL  124 (310)
Q Consensus        84 i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~------~---------------------------------~~  124 (310)
                      ++.++..+++|+++...  +..++....+.|+|.|-.+      +                                 ..
T Consensus       106 ~~~~K~~f~vpfmad~~--~l~EAlrai~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~  183 (287)
T TIGR00343       106 FHIDKKKFKVPFVCGAR--DLGEALRRINEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELR  183 (287)
T ss_pred             HHHHHHHcCCCEEccCC--CHHHHHHHHHCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccC
Confidence            77888888999988744  4467888889999998622      1                                 01


Q ss_pred             ChhHHHHHHHhcCCCCcEE--e--ecCCHHHHHHHHHhCCCEEEEecC
Q 037779          125 TPADEENHINKHNFRVPFV--C--GCRNLGESLRRIREGAAMIRTKGE  168 (310)
Q Consensus       125 ~~~~~~~~~~~~~~~l~v~--~--~v~t~~ea~~a~~~Gad~I~v~g~  168 (310)
                      .+.++++.+.+. ..++++  +  +++|++++..+.++|++.+.+.+.
T Consensus       184 ~~~elLkei~~~-~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSa  230 (287)
T TIGR00343       184 VPVELLLEVLKL-GKLPVVNFAAGGVATPADAALMMQLGADGVFVGSG  230 (287)
T ss_pred             CCHHHHHHHHHh-CCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHH
Confidence            233455555442 347776  3  488999999999999999988633

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=96.48  E-value=0.028  Score=53.71  Aligned_cols=86  Identities=23%  Similarity=0.278  Sum_probs=63.7

Q ss_pred             ChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-------C-CCChhHHHHHHHh-cCCCCcEEee--cCC
Q 037779           80 DPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-------E-VLTPADEENHINK-HNFRVPFVCG--CRN  148 (310)
Q Consensus        80 ~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-------~-~~~~~~~~~~~~~-~~~~l~v~~~--v~t  148 (310)
                      +.++++.+++.+++||++|. +.+.+.++.+.++|+|+|..+       + .....+.+..+.+ .+..++++++  +.+
T Consensus       209 ~~~~l~~lr~~~~~PvivKg-v~~~~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~  287 (351)
T cd04737         209 SPADIEFIAKISGLPVIVKG-IQSPEDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRR  287 (351)
T ss_pred             CHHHHHHHHHHhCCcEEEec-CCCHHHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCC
Confidence            56888999999999999995 345678899999999998742       1 1112233444443 2234777774  999


Q ss_pred             HHHHHHHHHhCCCEEEEe
Q 037779          149 LGESLRRIREGAAMIRTK  166 (310)
Q Consensus       149 ~~ea~~a~~~Gad~I~v~  166 (310)
                      ..++.+++.+||+.|.+.
T Consensus       288 g~Di~kaLalGA~~V~iG  305 (351)
T cd04737         288 GEHVFKALASGADAVAVG  305 (351)
T ss_pred             HHHHHHHHHcCCCEEEEC
Confidence            999999999999999885

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>TIGR00419 tim triosephosphate isomerase

Probab=96.48  E-value=0.065  Score=47.42  Aligned_cols=148  Identities=24%  Similarity=0.316  Sum_probs=80.2

Q ss_pred             hHHHHHHHhhcCcceEeeccc--------cchHHHHHHHHcCCCeee-ec-CC-CChhHHHHHHHh-cCCCCcEEeecCC
Q 037779           81 PQLIKQIKSSVTIPVMAKARI--------GHFVEAQILEAIGVDYVD-ES-EV-LTPADEENHINK-HNFRVPFVCGCRN  148 (310)
Q Consensus        81 ~~~i~~i~~~~~lPv~~kd~i--------~~~~~~~~~~~aGad~v~-~~-~~-~~~~~~~~~~~~-~~~~l~v~~~v~t  148 (310)
                      +-.+..+++.+++++..++.-        |. .-++.+.++|+++++ +| +- +...++.+.++. ...++.+++.+..
T Consensus        41 ~~~L~~~~~~~~i~vgAQn~~~~~~Ga~TGe-vS~~mLkd~G~~~viiGHSERRf~Etdi~~Kv~~a~~~gl~~IvCi~~  119 (205)
T TIGR00419        41 FVDLPMIKREVEIPVYAQHVDAVLSGAHTGE-ISAEMLKDIGAKGTLINHSERRMKLADIEKKIARLKELGLTSVVCTNN  119 (205)
T ss_pred             HHHHHHHHHhcCceEEecccccccCCCccCc-CCHHHHHHcCCCEEEECcccCCCCccHHHHHHHHHHHCCCEEEEEEHH
Confidence            445666666556666665322        21 346789999999988 33 11 233334444443 4467877777754


Q ss_pred             HHHHHHHHHhCCCEEEEecC--CCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEE
Q 037779          149 LGESLRRIREGAAMIRTKGE--AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVV  225 (310)
Q Consensus       149 ~~ea~~a~~~Gad~I~v~g~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv  225 (310)
                      ..+..........+|.....  ++||...                   +++..       ..-...++..++. .+++| 
T Consensus       120 v~~q~~~~~~~~~vIAYEPvWAIGtG~~a-------------------s~~~~-------~~v~~~ir~~~~~~~~~~I-  172 (205)
T TIGR00419       120 VLTTAAAAALEPDVVAVEPPELIGTGIPV-------------------SPAQP-------EVVHGSVRAVKEVNESVRV-  172 (205)
T ss_pred             HHHHHHhhhhcCeEEEECCHHHhCCCCCC-------------------CHHHH-------HHHHHHHHhhhhhcCCceE-
Confidence            44333322233344543211  2333210                   11000       0012222322221 35778 


Q ss_pred             EEccCCCCCHHHHHHHHH-cCCCEEEEccccccC
Q 037779          226 HFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKS  258 (310)
Q Consensus       226 ~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~  258 (310)
                       +..|+| +++++.+++. .++||++||++-+++
T Consensus       173 -lYGGSV-~~~N~~~l~~~~~iDG~LvG~Asl~a  204 (205)
T TIGR00419       173 -LCGAGI-STGEDAELAAQLGAEGVLLASGSLKA  204 (205)
T ss_pred             -EEeCCC-CHHHHHHHhcCCCCCEEEEeeeeecC
Confidence             679999 5888888775 699999999998764

Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.

>PRK07084 fructose-bisphosphate aldolase; Provisional

Probab=96.46  E-value=0.51  Score=44.56  Aligned_cols=181  Identities=9%  Similarity=0.051  Sum_probs=102.2

Q ss_pred             HHHHHHHcCCcEEEecccccchhhhcCCCCCCC-ChHHHHHHHhhc--CcceEee-ccccchHHHHHHHHcCCCeeeec-
Q 037779           47 QARIAEEAGACAVMALERVPADIRAQGGVARMS-DPQLIKQIKSSV--TIPVMAK-ARIGHFVEAQILEAIGVDYVDES-  121 (310)
Q Consensus        47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~-~~~~i~~i~~~~--~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-  121 (310)
                      ..+++++.++..|.++.  +... .+.|..... -...++...+..  .+||.++ |.-.+++.+..+.++|-+.|-++ 
T Consensus        40 vi~AAee~~sPvIlq~s--~~~~-~~~g~~~~~~~~~~~~~~a~~a~~~VPV~lHLDHg~~~e~i~~ai~~GftSVMiD~  116 (321)
T PRK07084         40 IIQACVETKSPVILQVS--KGAR-KYANATLLRYMAQGAVEYAKELGCPIPIVLHLDHGDSFELCKDCIDSGFSSVMIDG  116 (321)
T ss_pred             HHHHHHHhCCCEEEEec--hhHH-hhCCchHHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEeeC
Confidence            46777777888775551  1111 222210000 011123333333  6899886 33335677888899999998733 


Q ss_pred             CCCChh-------HHHHHHHhcCCCCcEEee-----------------cCCHHHHHHHH-HhCCCEEEEe-cCCCCCchH
Q 037779          122 EVLTPA-------DEENHINKHNFRVPFVCG-----------------CRNLGESLRRI-REGAAMIRTK-GEAGTGNIV  175 (310)
Q Consensus       122 ~~~~~~-------~~~~~~~~~~~~l~v~~~-----------------v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~  175 (310)
                      +.++.+       ++.+.++..+  +.+=.+                 .++++|+.+-. +.|+|.+.+. |..++..  
T Consensus       117 S~lp~eeNI~~T~evv~~Ah~~G--vsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG~Y--  192 (321)
T PRK07084        117 SHLPYEENVALTKKVVEYAHQFD--VTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHGAY--  192 (321)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHcC--CeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHhCCCEEeeccccccccc--
Confidence            223333       3333333322  211111                 34677887766 4688888764 4332211  


Q ss_pred             HHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccC---------------------CCC
Q 037779          176 EAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAG---------------------GVA  233 (310)
Q Consensus       176 ~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~G---------------------GI~  233 (310)
                                      +. .+ +.    ....-++++++.+.+.. ++|+|.=-++                     || 
T Consensus       193 ----------------~~-~~-~~----~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~~~~~~Gi-  249 (321)
T PRK07084        193 ----------------KF-KP-GQ----CPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGKLKDAIGI-  249 (321)
T ss_pred             ----------------cC-CC-CC----CCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCccccCCCC-
Confidence                            10 00 00    00123688999998876 6998754444                     44 


Q ss_pred             CHHHHHHHHHcCCCEEEEcccccc
Q 037779          234 TPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       234 t~~di~~~~~~GadgV~VGsai~~  257 (310)
                      ..+++++++++|..-|=++|.+..
T Consensus       250 ~~e~~~kai~~GI~KINi~Tdl~~  273 (321)
T PRK07084        250 PEEQLRKAAKSAVCKINIDSDGRL  273 (321)
T ss_pred             CHHHHHHHHHcCCceeccchHHHH
Confidence            358999999999999999998765

>PRK14565 triosephosphate isomerase; Provisional

Probab=96.46  E-value=0.055  Score=48.91  Aligned_cols=44  Identities=16%  Similarity=0.271  Sum_probs=35.8

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccCCCHHHHHHH
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSGDPVRRARA  267 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~~dp~~~~~~  267 (310)
                      +++|  +..|+| +++++..+++. +.||++||++.++++++...++.
T Consensus       189 ~~~I--lYGGSV-~~~N~~~l~~~~~iDG~LvG~asl~~~~f~~ii~~  233 (237)
T PRK14565        189 KSHI--IYGGSV-NQENIRDLKSINQLSGVLVGSASLDVDSFCKIIQQ  233 (237)
T ss_pred             CceE--EEcCcc-CHhhHHHHhcCCCCCEEEEechhhcHHHHHHHHHH
Confidence            5788  679999 59999999974 99999999999987766555543

>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional

Probab=96.43  E-value=0.5  Score=48.61  Aligned_cols=188  Identities=10%  Similarity=0.059  Sum_probs=103.9

Q ss_pred             CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHH-HHHHHhhcCc--ceEeecccc-chHHH-HHHHHcCCC
Q 037779           42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQL-IKQIKSSVTI--PVMAKARIG-HFVEA-QILEAIGVD  116 (310)
Q Consensus        42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~-i~~i~~~~~l--Pv~~kd~i~-~~~~~-~~~~~aGad  116 (310)
                      ..+.+.++.+.++|++.+-.+ ..+       .|-+.-+++. .+++.+...-  +-.+..+.+ ..+.+ +.+...+.|
T Consensus        10 it~~eda~~a~~~gaD~iGfI-f~~-------~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld   81 (610)
T PRK13803         10 IKDSALISKAVDMLPDFIGFI-FYE-------KSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGID   81 (610)
T ss_pred             CCcHHHHHHHHHcCCCEEEEE-ecC-------CCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCC
Confidence            456889999999999998322 112       2223344677 6777665421  111222332 22333 556679999


Q ss_pred             eeeecCCCCh--hHHHHHHHhcCCCCcEEeecCCHHHHHHHH--HhCCCEEEEecC--CCCCchHHHHHHHHHhhcceec
Q 037779          117 YVDESEVLTP--ADEENHINKHNFRVPFVCGCRNLGESLRRI--REGAAMIRTKGE--AGTGNIVEAVRHVRSVMGDIRV  190 (310)
Q Consensus       117 ~v~~~~~~~~--~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~--~~Gad~I~v~g~--~~~~~~~~~~~~~~~~~~~~~~  190 (310)
                      .|..+...+.  .+..+.+++....+.-...+.+..+...+.  ..-+|++-+...  .++|+                 
T Consensus        82 ~vQLHG~e~~~~~~~~~~l~~~~~~iika~~v~~~~~~~~~~~~~~~~d~~LlDs~~~~~GGt-----------------  144 (610)
T PRK13803         82 FVQLHGAESKAEPAYCQRIYKKSIKKIGSFLIDDAFGFEVLDEYRDHVKYFLFDNKTKIYGGS-----------------  144 (610)
T ss_pred             EEEECCCCCcccHHHHHHhhhcCCcEEEEEEeCChhhHHHHHhhhccCCEEEEcCCCCCCCCC-----------------
Confidence            9875433331  344445544222222222333333322222  223566655421  11111                 


Q ss_pred             ccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHH-cCCC--EEEEccccccC---CCHHHH
Q 037779          191 LRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCD--GVFVGSGVFKS---GDPVRR  264 (310)
Q Consensus       191 l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~-~Gad--gV~VGsai~~~---~dp~~~  264 (310)
                                    +..-+|+.++.+.  .+.|++  .+||| +++|+.++++ ..+.  ||=+-|.+=..   .|+ ..
T Consensus       145 --------------G~~fdw~~~~~~~--~~~p~i--LAGGL-~peNV~~ai~~~~p~~~gVDvsSGvE~~pG~KD~-~k  204 (610)
T PRK13803        145 --------------GKSFDWEKFYNYN--FKFPFF--LSGGL-SPTNFDRIINLTHPQILGIDVSSGFEDSPGNKKL-TL  204 (610)
T ss_pred             --------------CCccChHHhhhcc--cCCcEE--EEeCC-CHHHHHHHHhhhCCCceEEEccCcccCCCCCcCH-HH
Confidence                          1122566655432  245884  48999 6999999997 4677  99999999854   344 56


Q ss_pred             HHHHHHHHHc
Q 037779          265 ARAIVQAVTN  274 (310)
Q Consensus       265 ~~~~~~~~~~  274 (310)
                      +++|.+.++.
T Consensus       205 i~~fi~~~k~  214 (610)
T PRK13803        205 LKSFITNVKK  214 (610)
T ss_pred             HHHHHHHHHH
Confidence            7888888876

>PRK05283 deoxyribose-phosphate aldolase; Provisional

Probab=96.42  E-value=0.045  Score=50.01  Aligned_cols=25  Identities=36%  Similarity=0.444  Sum_probs=20.2

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHHcCCC
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQLGCD  247 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~~Gad  247 (310)
                      ++.|  =|+|||.|.+++.+++++|.+
T Consensus       195 ~vgI--KAsGGIrt~~~A~~~i~ag~~  219 (257)
T PRK05283        195 TVGF--KPAGGVRTAEDAAQYLALADE  219 (257)
T ss_pred             CeeE--EccCCCCCHHHHHHHHHHHHH
Confidence            3555  469999999999999998643

>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase

Probab=96.40  E-value=0.21  Score=46.59  Aligned_cols=176  Identities=15%  Similarity=0.190  Sum_probs=95.5

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhc-CCC---CCCC---ChHHHHHHHhhcCcceEee--ccccc----hHHH
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQ-GGV---ARMS---DPQLIKQIKSSVTIPVMAK--ARIGH----FVEA  107 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~-~G~---~~~~---~~~~i~~i~~~~~lPv~~k--d~i~~----~~~~  107 (310)
                      .+.|.--|+.++.+|++++..--   ...-+. .|.   ..+.   ....++.|.+.+++||++-  ++.+.    ...+
T Consensus        22 ~v~Da~SArl~e~aGf~ai~~sg---~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V   98 (294)
T TIGR02319        22 SAYDALSAKVIQQAGFPAVHMTG---SGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRAT   98 (294)
T ss_pred             cCcCHHHHHHHHHcCCCEEEecH---HHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHH
Confidence            34566779999999999983100   001011 111   0111   1334567777889999985  23332    2346


Q ss_pred             HHHHHcCCCeeeecCC--------------CChhHHHHHHHh-----cCCCCcEEeecC-----CHHHH----HHHHHhC
Q 037779          108 QILEAIGVDYVDESEV--------------LTPADEENHINK-----HNFRVPFVCGCR-----NLGES----LRRIREG  159 (310)
Q Consensus       108 ~~~~~aGad~v~~~~~--------------~~~~~~~~~~~~-----~~~~l~v~~~v~-----t~~ea----~~a~~~G  159 (310)
                      +.+.++|+.+|++-+.              .+.++....++.     ...++.+.+-+.     ..+|+    +...++|
T Consensus        99 ~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAG  178 (294)
T TIGR02319        99 REFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREYVAAG  178 (294)
T ss_pred             HHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHHhC
Confidence            7888899999984332              233344444432     112233333222     13333    2233567


Q ss_pred             CCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEE-EccCCCCCHHHH
Q 037779          160 AAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVH-FAAGGVATPADA  238 (310)
Q Consensus       160 ad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~-ia~GGI~t~~di  238 (310)
                      ||.|.+.+.                                       .+.+.++.+.+..+.|++. +..||-.-.-.+
T Consensus       179 AD~ifi~~~---------------------------------------~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~  219 (294)
T TIGR02319       179 ADCIFLEAM---------------------------------------LDVEEMKRVRDEIDAPLLANMVEGGKTPWLTT  219 (294)
T ss_pred             CCEEEecCC---------------------------------------CCHHHHHHHHHhcCCCeeEEEEecCCCCCCCH
Confidence            777776532                                       0223344444444557621 234553222578


Q ss_pred             HHHHHcCCCEEEEccccccC
Q 037779          239 AMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       239 ~~~~~~GadgV~VGsai~~~  258 (310)
                      .++.++|++-|..+..++.+
T Consensus       220 ~eL~~lG~~~v~~~~~~~~a  239 (294)
T TIGR02319       220 KELESIGYNLAIYPLSGWMA  239 (294)
T ss_pred             HHHHHcCCcEEEEcHHHHHH
Confidence            89999999999999988774

This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=96.39  E-value=0.032  Score=50.40  Aligned_cols=79  Identities=28%  Similarity=0.366  Sum_probs=60.0

Q ss_pred             cCCccc--cC-CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHH
Q 037779           35 RGGVIM--DV-VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILE  111 (310)
Q Consensus        35 ~~g~i~--~~-~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~  111 (310)
                      +.|+..  .| .|+..++++++.|++.++-+.    +.- ..| .-..+++.|+.+++..++||++..+|++.+++..+.
T Consensus       121 ~~Gf~vlpyc~dd~~~ar~l~~~G~~~vmPlg----~pI-Gsg-~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~Am  194 (248)
T cd04728         121 KEGFTVLPYCTDDPVLAKRLEDAGCAAVMPLG----SPI-GSG-QGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQAM  194 (248)
T ss_pred             HCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCC----cCC-CCC-CCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHH
Confidence            446543  33 458999999999999985331    111 112 124569999999998899999999999889999999


Q ss_pred             HcCCCeee
Q 037779          112 AIGVDYVD  119 (310)
Q Consensus       112 ~aGad~v~  119 (310)
                      +.|+|.|+
T Consensus       195 elGAdgVl  202 (248)
T cd04728         195 ELGADAVL  202 (248)
T ss_pred             HcCCCEEE
Confidence            99999998

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>PRK02227 hypothetical protein; Provisional

Probab=96.38  E-value=0.65  Score=41.89  Aligned_cols=199  Identities=20%  Similarity=0.183  Sum_probs=111.2

Q ss_pred             cccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC--cceEee--ccccch----HHHHHH
Q 037779           39 IMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT--IPVMAK--ARIGHF----VEAQIL  110 (310)
Q Consensus        39 i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~--lPv~~k--d~i~~~----~~~~~~  110 (310)
                      +.++.+.+.|+.+.++|++.| ++    +++..  |+.=-..+..+++|++.+.  .|++.-  |+-...    ..+...
T Consensus         4 LvSvr~~eEA~~Al~~GaDiI-Dv----K~P~~--GaLGA~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~~   76 (238)
T PRK02227          4 LVSVRNLEEALEALAGGADII-DV----KNPKE--GSLGANFPWVIREIVAAVPGRKPVSATIGDVPYKPGTISLAALGA   76 (238)
T ss_pred             eeccCCHHHHHHHHhcCCCEE-Ec----cCCCC--CCCCCCCHHHHHHHHHHhCCCCCceeeccCCCCCchHHHHHHHHH
Confidence            445678999999999999988 77    55543  3322345888999998874  788764  322111    122334


Q ss_pred             HHcCCCeeeec--CCCChhHHHHHH-------HhcCCCCcEEe----ecC-----CHHH-HHHHHHhCCCEEEEecCCCC
Q 037779          111 EAIGVDYVDES--EVLTPADEENHI-------NKHNFRVPFVC----GCR-----NLGE-SLRRIREGAAMIRTKGEAGT  171 (310)
Q Consensus       111 ~~aGad~v~~~--~~~~~~~~~~~~-------~~~~~~l~v~~----~v~-----t~~e-a~~a~~~Gad~I~v~g~~~~  171 (310)
                      .+.|+|+|-+-  ...+..+..+.+       +....+..++.    +-+     ++.+ ...+.+.|++.+++.....+
T Consensus        77 a~~GvDyVKvGl~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa~Kd  156 (238)
T PRK02227         77 AATGADYVKVGLYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTAIKD  156 (238)
T ss_pred             HhhCCCEEEEcCCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEecccCC
Confidence            44899998621  122233333322       22223322222    211     2333 34566789988887633332


Q ss_pred             CchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEE
Q 037779          172 GNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFV  251 (310)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~V  251 (310)
                      +.               +.+..++.+.          -.+++....+. .+-+  -.+|-+ ..+|+..+..+++|-+.+
T Consensus       157 g~---------------~Lfd~l~~~~----------L~~Fv~~ar~~-Gl~~--gLAGSL-~~~dip~L~~l~pD~lGf  207 (238)
T PRK02227        157 GK---------------SLFDHMDEEE----------LAEFVAEARSH-GLMS--ALAGSL-KFEDIPALKRLGPDILGV  207 (238)
T ss_pred             Cc---------------chHhhCCHHH----------HHHHHHHHHHc-ccHh--HhcccC-chhhHHHHHhcCCCEEEe
Confidence            21               0111111111          12233333332 2222  236888 489999999999999999


Q ss_pred             ccccccCCCH-----HHHHHHHHHHHH
Q 037779          252 GSGVFKSGDP-----VRRARAIVQAVT  273 (310)
Q Consensus       252 Gsai~~~~dp-----~~~~~~~~~~~~  273 (310)
                      =++++...|-     .+.++++++.++
T Consensus       208 RgavC~g~dR~~~id~~~V~~~~~~l~  234 (238)
T PRK02227        208 RGAVCGGGDRTGRIDPELVAELREALR  234 (238)
T ss_pred             chhccCCCCcccccCHHHHHHHHHHhh
Confidence            9999976631     234555555554

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=96.38  E-value=0.086  Score=52.67  Aligned_cols=113  Identities=19%  Similarity=0.262  Sum_probs=77.7

Q ss_pred             CHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeee--
Q 037779           44 TPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDE--  120 (310)
Q Consensus        44 ~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~--  120 (310)
                      +.+.++.+.++|++.+ .+     |...  |. ...-.+.++.+++.. ++|+++++.. +.+.+..+.++|||.|..  
T Consensus       229 ~~e~a~~L~~agvdvi-vv-----D~a~--g~-~~~vl~~i~~i~~~~p~~~vi~g~v~-t~e~a~~l~~aGad~i~vg~  298 (486)
T PRK05567        229 NEERAEALVEAGVDVL-VV-----DTAH--GH-SEGVLDRVREIKAKYPDVQIIAGNVA-TAEAARALIEAGADAVKVGI  298 (486)
T ss_pred             hHHHHHHHHHhCCCEE-EE-----ECCC--Cc-chhHHHHHHHHHhhCCCCCEEEeccC-CHHHHHHHHHcCCCEEEECC
Confidence            3689999999999976 33     2111  11 011267788888887 8999886544 446788999999999852  


Q ss_pred             -cC---------C--CChhHHHHHHHh--cCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779          121 -SE---------V--LTPADEENHINK--HNFRVPFVC--GCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       121 -~~---------~--~~~~~~~~~~~~--~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                       +.         .  .+....+..+.+  ...++++++  ++++..|+.+|+.+|||.+.+.
T Consensus       299 g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G  360 (486)
T PRK05567        299 GPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLG  360 (486)
T ss_pred             CCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEEC
Confidence             10         0  112223333332  235689999  6999999999999999999875

>KOG2333 consensus Uncharacterized conserved protein [General function prediction only]

Probab=96.37  E-value=0.051  Score=53.26  Aligned_cols=147  Identities=21%  Similarity=0.274  Sum_probs=91.1

Q ss_pred             HHHHHH-cCCcEEEecc-cccchh--hhcCCCCCCCChHHHHHHHhh----c-CcceEeeccccchHHHHHHHHcCCCee
Q 037779           48 ARIAEE-AGACAVMALE-RVPADI--RAQGGVARMSDPQLIKQIKSS----V-TIPVMAKARIGHFVEAQILEAIGVDYV  118 (310)
Q Consensus        48 a~~~~~-~Ga~~I~~l~-~~~~d~--r~~~G~~~~~~~~~i~~i~~~----~-~lPv~~kd~i~~~~~~~~~~~aGad~v  118 (310)
                      |+.+.+ .-++.| +|| .||-|.  +..+|+.++.++..+..+-+.    + ++|+.+|.+.+..+.            
T Consensus       338 aq~i~e~~~VDFI-DlN~GCPIDlvy~qG~GsALl~rp~rl~~~l~~m~~vs~~iPiTVKiRTG~keg------------  404 (614)
T KOG2333|consen  338 AQVIAETCDVDFI-DLNMGCPIDLVYRQGGGSALLNRPARLIRILRAMNAVSGDIPITVKIRTGTKEG------------  404 (614)
T ss_pred             HHHHHhhcceeee-eccCCCChheeeccCCcchhhcCcHHHHHHHHHHHHhccCCCeEEEEecccccC------------
Confidence            444443 334555 888 666654  444688888888877665433    2 479999988774321            


Q ss_pred             eecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchh
Q 037779          119 DESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDE  198 (310)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  198 (310)
                        +.  -..+++..+.                     -+-|++.|.+||+.-                   ...|.    
T Consensus       405 --~~--~a~~Li~~i~---------------------newg~savTlHGRSR-------------------qQRYT----  436 (614)
T KOG2333|consen  405 --HP--VAHELIPRIV---------------------NEWGASAVTLHGRSR-------------------QQRYT----  436 (614)
T ss_pred             --ch--hHHHHHHHHh---------------------hccCcceEEecCchh-------------------hhhhh----
Confidence              00  0122222221                     034778888887621                   11121    


Q ss_pred             HHhhhccCCCcHHHHHHHHhc-CC-CCEEEEccCCCCCHHHHHHHH-HcC-CCEEEEccccccCCCHHHH
Q 037779          199 VFTFAKNIAAPYDLVMQTKQL-GR-LPVVHFAAGGVATPADAAMMM-QLG-CDGVFVGSGVFKSGDPVRR  264 (310)
Q Consensus       199 ~~~~~~~~~~~~~l~~~i~~~-~~-iPVv~ia~GGI~t~~di~~~~-~~G-adgV~VGsai~~~~dp~~~  264 (310)
                             -.++|+.+.++.+. .+ +|+  |.+|.|.|.+|-++-+ +.+ .++||+|++-.-.+|++..
T Consensus       437 -------K~AnWdYi~e~a~~ak~~l~l--iGNGDi~S~eDw~~~~~~~p~v~svMIaRGALIKPWIFtE  497 (614)
T KOG2333|consen  437 -------KSANWDYIEECADKAKSALPL--IGNGDILSWEDWYERLNQNPNVDSVMIARGALIKPWIFTE  497 (614)
T ss_pred             -------cccChHHHHHHHHhcccCcee--EecCccccHHHHHHHhhcCCCcceEEeeccccccchHhhh
Confidence                   13468888887764 33 888  6799999999965555 454 9999999977766776543

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=96.37  E-value=0.13  Score=48.70  Aligned_cols=124  Identities=19%  Similarity=0.239  Sum_probs=76.0

Q ss_pred             cCcceEee--ccccchHHHHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeec----CCHHHHHHHHHhCCCEEE
Q 037779           91 VTIPVMAK--ARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGC----RNLGESLRRIREGAAMIR  164 (310)
Q Consensus        91 ~~lPv~~k--d~i~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v----~t~~ea~~a~~~Gad~I~  164 (310)
                      .++|++..  +.+.....+..+..+|.=.++.. ..++++..+.+++....+.+.+.+    ++.+.+...++.|+++|.
T Consensus        33 l~~Piv~apM~~vt~~~ma~ava~~GglGvi~~-~~~~~~~~~~i~~vk~~l~v~~~~~~~~~~~~~~~~l~eagv~~I~  111 (325)
T cd00381          33 LNIPLVSAPMDTVTESEMAIAMARLGGIGVIHR-NMSIEEQAEEVRKVKGRLLVGAAVGTREDDKERAEALVEAGVDVIV  111 (325)
T ss_pred             cCCCEEecCCCcCCcHHHHHHHHHCCCEEEEeC-CCCHHHHHHHHHHhccCceEEEecCCChhHHHHHHHHHhcCCCEEE
Confidence            36788763  33444455566667887666533 345677666666522123333332    234456667788999988


Q ss_pred             EecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHH
Q 037779          165 TKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQ  243 (310)
Q Consensus       165 v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~  243 (310)
                      ++....  +                                .....+.++.+++.. ++||+   .|.+.|++++..+.+
T Consensus       112 vd~~~G--~--------------------------------~~~~~~~i~~ik~~~p~v~Vi---~G~v~t~~~A~~l~~  154 (325)
T cd00381         112 IDSAHG--H--------------------------------SVYVIEMIKFIKKKYPNVDVI---AGNVVTAEAARDLID  154 (325)
T ss_pred             EECCCC--C--------------------------------cHHHHHHHHHHHHHCCCceEE---ECCCCCHHHHHHHHh
Confidence            752111  1                                001245666666643 36774   389999999999999


Q ss_pred             cCCCEEEEc
Q 037779          244 LGCDGVFVG  252 (310)
Q Consensus       244 ~GadgV~VG  252 (310)
                      +|+|+|.||
T Consensus       155 aGaD~I~vg  163 (325)
T cd00381         155 AGADGVKVG  163 (325)
T ss_pred             cCCCEEEEC
Confidence            999999984

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>PLN02979 glycolate oxidase

Probab=96.35  E-value=0.029  Score=53.62  Aligned_cols=87  Identities=15%  Similarity=0.176  Sum_probs=64.5

Q ss_pred             ChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-------CCC-ChhHHHHHHHh-cCCCCcEEee--cCC
Q 037779           80 DPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-------EVL-TPADEENHINK-HNFRVPFVCG--CRN  148 (310)
Q Consensus        80 ~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-------~~~-~~~~~~~~~~~-~~~~l~v~~~--v~t  148 (310)
                      +.++++.+|+..++||++|... +.+.++.+.++|+|+|..+       +.. +..+....+.+ .+..++++++  +++
T Consensus       211 tW~dl~wlr~~~~~PvivKgV~-~~~dA~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~  289 (366)
T PLN02979        211 SWKDVQWLQTITKLPILVKGVL-TGEDARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRR  289 (366)
T ss_pred             CHHHHHHHHhccCCCEEeecCC-CHHHHHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCc
Confidence            4688999999999999999875 4578899999999998732       111 12333333433 2334677774  899


Q ss_pred             HHHHHHHHHhCCCEEEEec
Q 037779          149 LGESLRRIREGAAMIRTKG  167 (310)
Q Consensus       149 ~~ea~~a~~~Gad~I~v~g  167 (310)
                      ..++.+++.+|||.+.+..
T Consensus       290 G~Di~KALALGAdaV~iGr  308 (366)
T PLN02979        290 GTDVFKALALGASGIFIGR  308 (366)
T ss_pred             HHHHHHHHHcCCCEEEEcH
Confidence            9999999999999999863

>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds

Probab=96.34  E-value=0.21  Score=45.23  Aligned_cols=101  Identities=12%  Similarity=0.098  Sum_probs=53.1

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCC--C-CCCC---hHHHHHHHhhcC-cceEeecccc---ch----HH
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGV--A-RMSD---PQLIKQIKSSVT-IPVMAKARIG---HF----VE  106 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~--~-~~~~---~~~i~~i~~~~~-lPv~~kd~i~---~~----~~  106 (310)
                      .+-|+-.|+.++++|+++|..--   .-.....|.  . ...-   ...++.|++.+. +||++..-.+   ..    .-
T Consensus        18 ~ayD~~sA~i~e~aG~dai~v~~---s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~   94 (240)
T cd06556          18 TAYDYSMAKQFADAGLNVMLVGD---SQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFEL   94 (240)
T ss_pred             cCCCHHHHHHHHHcCCCEEEECh---HHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHH
Confidence            45677889999999999983221   000011111  0 1111   233456666664 7988853332   21    23


Q ss_pred             HHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeec
Q 037779          107 AQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGC  146 (310)
Q Consensus       107 ~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v  146 (310)
                      +..+.++||+.|.+-+.....+.++.+...  ++.++.-+
T Consensus        95 ~~~l~~aGa~gv~iED~~~~~~~i~ai~~a--~i~ViaRt  132 (240)
T cd06556          95 AKTFMRAGAAGVKIEGGEWHIETLQMLTAA--AVPVIAHT  132 (240)
T ss_pred             HHHHHHcCCcEEEEcCcHHHHHHHHHHHHc--CCeEEEEe
Confidence            566778999999854432222333444432  35555433

Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=96.32  E-value=0.05  Score=54.19  Aligned_cols=112  Identities=13%  Similarity=0.134  Sum_probs=77.0

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeee---
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDE---  120 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~---  120 (310)
                      .+.++.+.++|++.| .+     |..... +  ..-.+.++.|++.. ++||++ +++.+.+.++.+.++|||+|-+   
T Consensus       227 ~~ra~~Lv~aGVd~i-~~-----D~a~g~-~--~~~~~~i~~i~~~~~~~~vi~-g~~~t~~~~~~l~~~G~d~i~vg~g  296 (475)
T TIGR01303       227 GGKAKALLDAGVDVL-VI-----DTAHGH-Q--VKMISAIKAVRALDLGVPIVA-GNVVSAEGVRDLLEAGANIIKVGVG  296 (475)
T ss_pred             HHHHHHHHHhCCCEE-EE-----eCCCCC-c--HHHHHHHHHHHHHCCCCeEEE-eccCCHHHHHHHHHhCCCEEEECCc
Confidence            588999999999998 33     332211 1  11256688888765 799988 4455668889999999999851   


Q ss_pred             ------cCCC---Chh------HHHHHHHhcCCCCcEEee--cCCHHHHHHHHHhCCCEEEEecC
Q 037779          121 ------SEVL---TPA------DEENHINKHNFRVPFVCG--CRNLGESLRRIREGAAMIRTKGE  168 (310)
Q Consensus       121 ------~~~~---~~~------~~~~~~~~~~~~l~v~~~--v~t~~ea~~a~~~Gad~I~v~g~  168 (310)
                            ....   ..+      ++.+.++.  .+++++++  +++..++.+|+.+||+.+++.+.
T Consensus       297 ~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~--~~~~viadGgi~~~~di~kala~GA~~vm~g~~  359 (475)
T TIGR01303       297 PGAMCTTRMMTGVGRPQFSAVLECAAEARK--LGGHVWADGGVRHPRDVALALAAGASNVMVGSW  359 (475)
T ss_pred             CCccccCccccCCCCchHHHHHHHHHHHHH--cCCcEEEeCCCCCHHHHHHHHHcCCCEEeechh
Confidence                  1111   111      22222232  46888885  99999999999999999988643

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=96.30  E-value=0.021  Score=53.72  Aligned_cols=112  Identities=22%  Similarity=0.197  Sum_probs=72.9

Q ss_pred             EeccCCCccccccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceE
Q 037779           17 ETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVM   96 (310)
Q Consensus        17 e~k~~sp~~~~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~   96 (310)
                      +++++.|.  ..|+.+++|.|+-......++++.++++|++.|.+..+....  .+.|.  ..+++.++++++.+++||+
T Consensus       125 avr~~~~~--~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~--~y~g~--~~~~~~i~~ik~~~~iPVi  198 (312)
T PRK10550        125 AMREAVPA--HLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGRTKED--GYRAE--HINWQAIGEIRQRLTIPVI  198 (312)
T ss_pred             HHHHhcCC--CcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCCCCcc--CCCCC--cccHHHHHHHHhhcCCcEE
Confidence            34444442  258899999886332222588999999999998543222211  12221  1257889999999999999


Q ss_pred             eeccccchHHHHHHH-HcCCCeeeec-CCCChhHHHHHHH
Q 037779           97 AKARIGHFVEAQILE-AIGVDYVDES-EVLTPADEENHIN  134 (310)
Q Consensus        97 ~kd~i~~~~~~~~~~-~aGad~v~~~-~~~~~~~~~~~~~  134 (310)
                      .+..+.+.++++.+. ..|+|.|-+. ..+..+.+.+.++
T Consensus       199 ~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~  238 (312)
T PRK10550        199 ANGEIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVK  238 (312)
T ss_pred             EeCCcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhh
Confidence            999988777776655 5899999743 3333445544443

>cd02911 arch_FMN Archeal FMN-binding domain

Probab=96.28  E-value=0.036  Score=49.98  Aligned_cols=82  Identities=24%  Similarity=0.293  Sum_probs=60.6

Q ss_pred             cccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHH
Q 037779           27 KVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVE  106 (310)
Q Consensus        27 ~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~  106 (310)
                      ..|+..++|.|+-  ....++++.++++|+++|+.-      .. +.|.  ..+.+.+++++  +++||+.+..+.+.++
T Consensus       139 ~~pVsvKir~g~~--~~~~~la~~l~~aG~d~ihv~------~~-~~g~--~ad~~~I~~i~--~~ipVIgnGgI~s~ed  205 (233)
T cd02911         139 GVPVSVKIRAGVD--VDDEELARLIEKAGADIIHVD------AM-DPGN--HADLKKIRDIS--TELFIIGNNSVTTIES  205 (233)
T ss_pred             CCCEEEEEcCCcC--cCHHHHHHHHHHhCCCEEEEC------cC-CCCC--CCcHHHHHHhc--CCCEEEEECCcCCHHH
Confidence            4688899998854  233689999999999998542      11 1121  23466777776  7899999999988888


Q ss_pred             HHHHHHcCCCeeeec
Q 037779          107 AQILEAIGVDYVDES  121 (310)
Q Consensus       107 ~~~~~~aGad~v~~~  121 (310)
                      ++.+...|||.|-+.
T Consensus       206 a~~~l~~GaD~VmiG  220 (233)
T cd02911         206 AKEMFSYGADMVSVA  220 (233)
T ss_pred             HHHHHHcCCCEEEEc
Confidence            888888999999743

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=96.26  E-value=0.037  Score=53.03  Aligned_cols=87  Identities=15%  Similarity=0.120  Sum_probs=64.4

Q ss_pred             ChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-------C-CCChhHHHHHHHhcCCCCcEEee--cCCH
Q 037779           80 DPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-------E-VLTPADEENHINKHNFRVPFVCG--CRNL  149 (310)
Q Consensus        80 ~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-------~-~~~~~~~~~~~~~~~~~l~v~~~--v~t~  149 (310)
                      ..+.++.+++..+.|+++|+. .+.+.+..+.++|+|+|..+       + ..++.+....+.+. .+++++++  +++.
T Consensus       224 ~w~~i~~ir~~~~~pviiKgV-~~~eda~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~-~~~~vi~dGGIr~g  301 (361)
T cd04736         224 NWQDLRWLRDLWPHKLLVKGI-VTAEDAKRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAA-TYKPVLIDSGIRRG  301 (361)
T ss_pred             CHHHHHHHHHhCCCCEEEecC-CCHHHHHHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHH-hCCeEEEeCCCCCH
Confidence            356889999999999999974 46678899999999998732       1 11223334444332 34777775  8999


Q ss_pred             HHHHHHHHhCCCEEEEecC
Q 037779          150 GESLRRIREGAAMIRTKGE  168 (310)
Q Consensus       150 ~ea~~a~~~Gad~I~v~g~  168 (310)
                      .++.+++.+||+.+.+..+
T Consensus       302 ~Dv~KALaLGA~aV~iGr~  320 (361)
T cd04736         302 SDIVKALALGANAVLLGRA  320 (361)
T ss_pred             HHHHHHHHcCCCEEEECHH
Confidence            9999999999999998643

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional

Probab=96.25  E-value=0.42  Score=44.05  Aligned_cols=87  Identities=15%  Similarity=0.080  Sum_probs=53.9

Q ss_pred             ccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChH-HHHHHHhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779           40 MDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQ-LIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYV  118 (310)
Q Consensus        40 ~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~-~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v  118 (310)
                      ....+|..++.+...|+|++ .+     |..+  |........ .++.++ ..+++.+++..-.+...++.+.++||++|
T Consensus        24 ~~~~sp~~~E~~a~~GfD~v-~i-----D~EH--g~~~~~~l~~~i~a~~-~~g~~~lVRvp~~~~~~i~r~LD~GA~GI   94 (267)
T PRK10128         24 LSSTTSYMAEIAATSGYDWL-LI-----DGEH--APNTIQDLYHQLQAIA-PYASQPVIRPVEGSKPLIKQVLDIGAQTL   94 (267)
T ss_pred             ecCCCcHHHHHHHHcCCCEE-EE-----cccc--CCCCHHHHHHHHHHHH-hcCCCeEEECCCCCHHHHHHHhCCCCCee
Confidence            34556899999999999998 23     2211  111111111 222222 45566666544444567788999999999


Q ss_pred             eecCCCChhHHHHHHHh
Q 037779          119 DESEVLTPADEENHINK  135 (310)
Q Consensus       119 ~~~~~~~~~~~~~~~~~  135 (310)
                      +.+..-+.++..+..+.
T Consensus        95 ivP~V~saeeA~~~V~a  111 (267)
T PRK10128         95 LIPMVDTAEQARQVVSA  111 (267)
T ss_pred             EecCcCCHHHHHHHHHh
Confidence            98777677777766655

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=96.22  E-value=0.047  Score=52.76  Aligned_cols=87  Identities=17%  Similarity=0.164  Sum_probs=65.0

Q ss_pred             CChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec--------CCCChhHHHHHHHh-cCCCCcEEee--cC
Q 037779           79 SDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES--------EVLTPADEENHINK-HNFRVPFVCG--CR  147 (310)
Q Consensus        79 ~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~--------~~~~~~~~~~~~~~-~~~~l~v~~~--v~  147 (310)
                      .+.+.++.+++.+++|+++|... +.+.++.+.++|+|+|..+        ...++.+.+..+.+ .+..++++++  +.
T Consensus       240 ~tW~~i~~lr~~~~~pvivKgV~-~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr  318 (383)
T cd03332         240 LTWEDLAFLREWTDLPIVLKGIL-HPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVR  318 (383)
T ss_pred             CCHHHHHHHHHhcCCCEEEecCC-CHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcC
Confidence            35688999999999999999654 4578889999999998732        11223344444443 2234777774  89


Q ss_pred             CHHHHHHHHHhCCCEEEEe
Q 037779          148 NLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       148 t~~ea~~a~~~Gad~I~v~  166 (310)
                      +..++.+++.+|||.+.+.
T Consensus       319 ~G~Dv~KALaLGA~~v~iG  337 (383)
T cd03332         319 TGADIMKALALGAKAVLIG  337 (383)
T ss_pred             cHHHHHHHHHcCCCEEEEc
Confidence            9999999999999999985

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=96.19  E-value=0.25  Score=45.56  Aligned_cols=135  Identities=17%  Similarity=0.143  Sum_probs=88.5

Q ss_pred             eeecceEEEEeccCCCccccccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHH
Q 037779            8 TVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQI   87 (310)
Q Consensus         8 ~~~~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i   87 (310)
                      -..++--|-|+|++    +..|+.-+.+.|.      ...++.+.++|++.| +-    |+..       .+..++++.+
T Consensus        50 R~~~~~~I~~Ik~~----V~iPVIGi~K~~~------~~Ea~~L~eaGvDiI-Da----T~r~-------rP~~~~~~~i  107 (283)
T cd04727          50 RMADPKMIKEIMDA----VSIPVMAKVRIGH------FVEAQILEALGVDMI-DE----SEVL-------TPADEEHHID  107 (283)
T ss_pred             ecCCHHHHHHHHHh----CCCCeEEeeehhH------HHHHHHHHHcCCCEE-ec----cCCC-------CcHHHHHHHH
Confidence            33344445555553    2456666666644      678999999999988 43    2210       1124678888


Q ss_pred             HhhcCcceEeeccccchHHHHHHHHcCCCeeeecC-CCC-------------------------------------hhHH
Q 037779           88 KSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESE-VLT-------------------------------------PADE  129 (310)
Q Consensus        88 ~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~-~~~-------------------------------------~~~~  129 (310)
                      +..++.|+++.  +.+.+++....+.|+|.|-.+- ..+                                     ..++
T Consensus       108 K~~~~~l~MAD--~stleEal~a~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~el  185 (283)
T cd04727         108 KHKFKVPFVCG--ARNLGEALRRISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYEL  185 (283)
T ss_pred             HHHcCCcEEcc--CCCHHHHHHHHHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHH
Confidence            88889999776  3355788888999999986221 111                                     2234


Q ss_pred             HHHHHhcCCCCcEE--e--ecCCHHHHHHHHHhCCCEEEEec
Q 037779          130 ENHINKHNFRVPFV--C--GCRNLGESLRRIREGAAMIRTKG  167 (310)
Q Consensus       130 ~~~~~~~~~~l~v~--~--~v~t~~ea~~a~~~Gad~I~v~g  167 (310)
                      ++.+.+. ..++++  +  +++|++++..+.+.|++.+.+..
T Consensus       186 Lk~l~~~-~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGS  226 (283)
T cd04727         186 VKETAKL-GRLPVVNFAAGGVATPADAALMMQLGADGVFVGS  226 (283)
T ss_pred             HHHHHHh-cCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcH
Confidence            4444442 246664  3  47899999999999999988753

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>PRK00208 thiG thiazole synthase; Reviewed

Probab=96.18  E-value=0.047  Score=49.37  Aligned_cols=79  Identities=29%  Similarity=0.386  Sum_probs=59.8

Q ss_pred             cCCccc--cC-CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHH
Q 037779           35 RGGVIM--DV-VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILE  111 (310)
Q Consensus        35 ~~g~i~--~~-~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~  111 (310)
                      +.|+..  .| .|+..++++++.|++.++-+.    +. -..| .-..+++.++.+++..++||++..+|+..+++..+.
T Consensus       121 ~~Gf~vlpyc~~d~~~ak~l~~~G~~~vmPlg----~p-IGsg-~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~Am  194 (250)
T PRK00208        121 KEGFVVLPYCTDDPVLAKRLEEAGCAAVMPLG----AP-IGSG-LGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQAM  194 (250)
T ss_pred             HCCCEEEEEeCCCHHHHHHHHHcCCCEeCCCC----cC-CCCC-CCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHH
Confidence            446543  34 458999999999999985331    11 0112 124468999999998899999999999888999999


Q ss_pred             HcCCCeee
Q 037779          112 AIGVDYVD  119 (310)
Q Consensus       112 ~aGad~v~  119 (310)
                      +.|+|.|+
T Consensus       195 elGAdgVl  202 (250)
T PRK00208        195 ELGADAVL  202 (250)
T ss_pred             HcCCCEEE
Confidence            99999998

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=96.10  E-value=0.042  Score=53.07  Aligned_cols=87  Identities=20%  Similarity=0.130  Sum_probs=63.8

Q ss_pred             ChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-------C-CCChhHHHHHHHh-cCCCCcEEee--cCC
Q 037779           80 DPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-------E-VLTPADEENHINK-HNFRVPFVCG--CRN  148 (310)
Q Consensus        80 ~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-------~-~~~~~~~~~~~~~-~~~~l~v~~~--v~t  148 (310)
                      +.++|+.+++.+++|+++|... +.+.++.+.++|+|+|..+       + ..+..+....+.+ .+.+++++++  +++
T Consensus       233 tW~di~~lr~~~~~pvivKgV~-s~~dA~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~  311 (381)
T PRK11197        233 SWKDLEWIRDFWDGPMVIKGIL-DPEDARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRN  311 (381)
T ss_pred             CHHHHHHHHHhCCCCEEEEecC-CHHHHHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCc
Confidence            4567999999999999999875 4478889999999998722       1 1122233333332 3335777774  899


Q ss_pred             HHHHHHHHHhCCCEEEEec
Q 037779          149 LGESLRRIREGAAMIRTKG  167 (310)
Q Consensus       149 ~~ea~~a~~~Gad~I~v~g  167 (310)
                      ..++.+++.+||+.+.+..
T Consensus       312 g~Di~KALaLGA~~V~iGr  330 (381)
T PRK11197        312 GLDVVRMIALGADTVLLGR  330 (381)
T ss_pred             HHHHHHHHHcCcCceeEhH
Confidence            9999999999999999863

>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP

Probab=96.10  E-value=0.028  Score=50.26  Aligned_cols=137  Identities=20%  Similarity=0.228  Sum_probs=74.4

Q ss_pred             hHHHHHHHhcCCCCcEEeecCCHH----HHHH------HHHhCCCEEEEecCCCCCchHHHHHHHHHhh-cc-ee--ccc
Q 037779          127 ADEENHINKHNFRVPFVCGCRNLG----ESLR------RIREGAAMIRTKGEAGTGNIVEAVRHVRSVM-GD-IR--VLR  192 (310)
Q Consensus       127 ~~~~~~~~~~~~~l~v~~~v~t~~----ea~~------a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~-~~-~~--~l~  192 (310)
                      .++++.+++.+  .+++++.+..+    +...      ..+.|+|++.+++..+...+..+++.+++.. .. +.  .++
T Consensus        45 ~~~i~~l~~~~--~~I~~D~K~~Dig~t~~~~~~~~~~~~~~gaD~vTv~~~~G~~tl~~~~~~a~~~~~~~~~~v~~~s  122 (226)
T PF00215_consen   45 PEIIEELKERG--KPIFLDLKLGDIGNTVARYAEAGFAAFELGADAVTVHPFAGDDTLEAAVKAAKKHGRKGVFVVDLLS  122 (226)
T ss_dssp             HHHHHHHHHTT--SEEEEEEEE-SSHHHHHHHHHSCHHHHTTTESEEEEEGTTHHHHHHHHHHHHHHTTESEEEEEESTT
T ss_pred             HHHHHHHHHhc--CCEeeeeeecccchHHHHHHHHhhhhhcCCCcEEEEeccCCHHHHHHHHHHHhccCCcceEEEEecC
Confidence            45566666543  78888865542    2222      3578999999997766556677777777775 22 22  222


Q ss_pred             ccCchhHHh-----------h----h-c----cC--CCcHHHHHHH-Hhc----C--CC-CEEEEccCCCCCHHHHHHHH
Q 037779          193 NMDDDEVFT-----------F----A-K----NI--AAPYDLVMQT-KQL----G--RL-PVVHFAAGGVATPADAAMMM  242 (310)
Q Consensus       193 ~~~~d~~~~-----------~----~-~----~~--~~~~~l~~~i-~~~----~--~i-PVv~ia~GGI~t~~di~~~~  242 (310)
                      ..+.....+           .    . .    +.  +.....++.. .+.    +  +. +.  -.+||+. .....+..
T Consensus       123 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~G~v~~~~~~~~~~~~~~~~~l~PGi~~~~~--~~~~~~~-~~~~~~~~  199 (226)
T PF00215_consen  123 NPDSEDLQDLGLGVDQEIVHRAADLAAKAGVDGIVCSATEPAIRKAGPNFKILTPGIGAIQG--AVAGGQK-RATTPAAA  199 (226)
T ss_dssp             STTHHHHHHHHCTHHHHHHHHHHHHHHHTTEEEEEETTTCHHHHHHTTTSEEEEESBSSSTC--EECSSHH-CHHHHHHH
T ss_pred             CCCHHHHHhhhcccHHHHHHHHHHhhccccccCcccccccccccccccchhhccCCCCcccc--cCccccc-ccccHHHH
Confidence            222111111           0    0 0    00  0000011111 110    0  11 12  1345653 44455555


Q ss_pred             H-cCCCEEEEccccccCCCHHHHHHHH
Q 037779          243 Q-LGCDGVFVGSGVFKSGDPVRRARAI  268 (310)
Q Consensus       243 ~-~GadgV~VGsai~~~~dp~~~~~~~  268 (310)
                      . .|+|-++||++|++++||.+.++++
T Consensus       200 ~~~g~d~iiVGR~I~~a~dp~~aa~~i  226 (226)
T PF00215_consen  200 KQAGADIIIVGRAITKAEDPREAAEEI  226 (226)
T ss_dssp             HHTTGSEEEESHHHHTSSSHHHHHHHH
T ss_pred             HhcCCEEEEEChHHhCCCCHHHHHhcC
Confidence            4 7999999999999999999988764

In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....

>CHL00162 thiG thiamin biosynthesis protein G; Validated

Probab=96.09  E-value=0.064  Score=48.63  Aligned_cols=80  Identities=25%  Similarity=0.337  Sum_probs=62.4

Q ss_pred             eecCCccc--cC-CCHHHHHHHHHcCCcEEEecccccchhhhcCCCC-CCCChHHHHHHHhhcCcceEeeccccchHHHH
Q 037779           33 MLRGGVIM--DV-VTPEQARIAEEAGACAVMALERVPADIRAQGGVA-RMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQ  108 (310)
Q Consensus        33 ~l~~g~i~--~~-~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~-~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~  108 (310)
                      +.+.|+..  ++ .|+-.++++++.|+.+++-+.    .+  - |+. =+.|+..++.|++..++||++...|+..+++.
T Consensus       133 Lv~eGF~VlPY~~~D~v~a~rLed~Gc~aVMPlg----sP--I-GSg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~  205 (267)
T CHL00162        133 LVKKGFTVLPYINADPMLAKHLEDIGCATVMPLG----SP--I-GSGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEAS  205 (267)
T ss_pred             HHHCCCEEeecCCCCHHHHHHHHHcCCeEEeecc----Cc--c-cCCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHH
Confidence            34666643  33 348899999999999997662    11  1 221 25679999999999999999999999888888


Q ss_pred             HHHHcCCCeee
Q 037779          109 ILEAIGVDYVD  119 (310)
Q Consensus       109 ~~~~aGad~v~  119 (310)
                      .+.+.|+|+|+
T Consensus       206 ~AmElGaDgVL  216 (267)
T CHL00162        206 QAMELGASGVL  216 (267)
T ss_pred             HHHHcCCCEEe
Confidence            99999999998

>PRK05835 fructose-bisphosphate aldolase; Provisional

Probab=96.04  E-value=1.3  Score=41.52  Aligned_cols=178  Identities=12%  Similarity=0.084  Sum_probs=103.1

Q ss_pred             HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC-cceEee-ccccchHHHHHHHHcCCCeeeec-CC
Q 037779           47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT-IPVMAK-ARIGHFVEAQILEAIGVDYVDES-EV  123 (310)
Q Consensus        47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~-lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~  123 (310)
                      +.+++++.+...|.++-  +...+ +.|...  -...++.+.+... +||.++ |.-.+++.+..+.++|-+.|-.+ +.
T Consensus        33 vi~AAe~~~sPvIlq~s--~~~~~-~~g~~~--~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSVM~DgS~  107 (307)
T PRK05835         33 IFEAGNEENSPLFIQAS--EGAIK-YMGIDM--AVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASH  107 (307)
T ss_pred             HHHHHHHHCCCEEEEcC--ccHHh-hCChHH--HHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHcCCCEEEEeCCC
Confidence            46777777888775551  11111 122100  0224445555664 999887 33335678888899999998632 22


Q ss_pred             CChh-------HHHHHHHhcCCCCc----EE---------ee----cCCHHHHHHHH-HhCCCEEEEe-cCCCCCchHHH
Q 037779          124 LTPA-------DEENHINKHNFRVP----FV---------CG----CRNLGESLRRI-REGAAMIRTK-GEAGTGNIVEA  177 (310)
Q Consensus       124 ~~~~-------~~~~~~~~~~~~l~----v~---------~~----v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~~~  177 (310)
                      ++.+       ++++..+..+..+.    .+         .+    .++++|+.+-. +.|+|++.+. |..++-     
T Consensus       108 l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~-----  182 (307)
T PRK05835        108 HAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGA-----  182 (307)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCccccc-----
Confidence            3333       33333333332110    00         00    34577777665 4688888764 433221     


Q ss_pred             HHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHH---------------------
Q 037779          178 VRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPA---------------------  236 (310)
Q Consensus       178 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~---------------------  236 (310)
                                   ++...         ...-++++++.+.+..++|+|+=-++||. .+                     
T Consensus       183 -------------Yk~~~---------~p~L~f~~L~~I~~~~~iPLVLHGgSGip-~e~~~~~~~~g~~~~~~~g~~~e  239 (307)
T PRK05835        183 -------------FKFKG---------EPKLDFERLQEVKRLTNIPLVLHGASAIP-DDVRKSYLDAGGDLKGSKGVPFE  239 (307)
T ss_pred             -------------cCCCC---------CCccCHHHHHHHHHHhCCCEEEeCCCCCc-hHHhhhhhhhccccccccCCCHH
Confidence                         11000         01226888999988888999765455553 22                     


Q ss_pred             HHHHHHHcCCCEEEEcccccc
Q 037779          237 DAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       237 di~~~~~~GadgV~VGsai~~  257 (310)
                      +++++.++|..-|=++|.+..
T Consensus       240 ~~~kai~~GI~KiNi~T~l~~  260 (307)
T PRK05835        240 FLQESVKGGINKVNTDTDLRI  260 (307)
T ss_pred             HHHHHHHcCceEEEeChHHHH
Confidence            899999999999999998865

>PRK12653 fructose-6-phosphate aldolase; Reviewed

Probab=96.04  E-value=1  Score=40.25  Aligned_cols=192  Identities=15%  Similarity=0.109  Sum_probs=108.1

Q ss_pred             cCCCHHHHHHHHHcC-CcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC--cceEeeccccc----hHHHHHHHHc
Q 037779           41 DVVTPEQARIAEEAG-ACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT--IPVMAKARIGH----FVEAQILEAI  113 (310)
Q Consensus        41 ~~~~~~~a~~~~~~G-a~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~--lPv~~kd~i~~----~~~~~~~~~a  113 (310)
                      +..+.+..+.+.+.| .+++. =|  |+=.+ +.|.   ...+.++++++..+  -|+.+...-.+    .+++..+.+.
T Consensus         6 DtA~~~~i~~~~~~~~i~GvT-TN--Psll~-k~g~---~~~~~~~~i~~~~~~~~~v~~Qv~~~d~e~mi~ea~~l~~~   78 (220)
T PRK12653          6 DTSDVVAVKALSRIFPLAGVT-TN--PSIIA-AGKK---PLEVVLPQLHEAMGGQGRLFAQVMATTAEGMVNDARKLRSI   78 (220)
T ss_pred             ecCCHHHHHHHHhCCCccEEe-CC--HHHHH-hcCC---CHHHHHHHHHHHhCCCCcEEEEEecCCHHHHHHHHHHHHHh
Confidence            445677777777765 46652 12  23222 2222   23566788887763  36665543322    2455566666


Q ss_pred             CCCeee-ecCCCChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHHHHHhhcceec
Q 037779          114 GVDYVD-ESEVLTPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRHVRSVMGDIRV  190 (310)
Q Consensus       114 Gad~v~-~~~~~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~  190 (310)
                      +-+.++ ++....--...+.+++.  |+.+.+ -+.|+.++..+..+||+||.+. |+..                    
T Consensus        79 ~~ni~IKIP~T~~Gl~A~~~L~~~--GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvgR~~--------------------  136 (220)
T PRK12653         79 IADIVVKVPVTAEGLAAIKMLKAE--GIPTLGTAVYGAAQGLLSALAGAEYVAPYVNRID--------------------  136 (220)
T ss_pred             CCCEEEEeCCCHHHHHHHHHHHHc--CCCeeEEEecCHHHHHHHHhcCCcEEEeecChHh--------------------
Confidence            656554 55432223455556554  444443 3789999999999999999875 4311                    


Q ss_pred             ccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc----CCCHHHHH
Q 037779          191 LRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK----SGDPVRRA  265 (310)
Q Consensus       191 l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~----~~dp~~~~  265 (310)
                        ....|++       ..-.++.+.+... .+.-|  + ...+.+++++.+++.+|+|.+-+.-.+++    .+.....+
T Consensus       137 --~~g~dg~-------~~i~~i~~~~~~~~~~tkI--L-aAS~r~~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~  204 (220)
T PRK12653        137 --AQGGSGI-------QTVTDLQQLLKMHAPQAKV--L-AASFKTPRQALDCLLAGCESITLPLDVAQQMISYPAVDAAV  204 (220)
T ss_pred             --hcCCChH-------HHHHHHHHHHHhcCCCcEE--E-EEecCCHHHHHHHHHcCCCEEECCHHHHHHHHcCCchHHHH
Confidence              0011111       0012222222221 12333  2 46778999999999999999999876655    34445566


Q ss_pred             HHHHHHHH
Q 037779          266 RAIVQAVT  273 (310)
Q Consensus       266 ~~~~~~~~  273 (310)
                      +.|.+-++
T Consensus       205 ~~F~~dw~  212 (220)
T PRK12653        205 AKFEQDWQ  212 (220)
T ss_pred             HHHHHHHH
Confidence            66666554

>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate

Probab=96.04  E-value=0.079  Score=48.07  Aligned_cols=37  Identities=30%  Similarity=0.572  Sum_probs=31.4

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCC
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGD  260 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~d  260 (310)
                      .+||  +..|+|+ ++|+.++++.+ +||++||++-.+.++
T Consensus       199 ~~~I--lYGGSV~-~~N~~~l~~~~~vDG~LVG~Asl~~~~  236 (242)
T cd00311         199 KVRI--LYGGSVN-PENAAELLAQPDIDGVLVGGASLKAES  236 (242)
T ss_pred             ceeE--EECCCCC-HHHHHHHhcCCCCCEEEeehHhhCHHH
Confidence            4788  6799994 79999999987 999999999997443

The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.

>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences

Probab=95.99  E-value=0.05  Score=48.78  Aligned_cols=81  Identities=27%  Similarity=0.406  Sum_probs=55.3

Q ss_pred             eecCCccc--cC-CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHH
Q 037779           33 MLRGGVIM--DV-VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQI  109 (310)
Q Consensus        33 ~l~~g~i~--~~-~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~  109 (310)
                      +.+.|+..  ++ .|+-.++++++.|+.+++-+.   .-+-..   .=+.++..++.+++..++||++..++|...++..
T Consensus       119 Lv~eGF~VlPY~~~D~v~akrL~d~GcaavMPlg---sPIGSg---~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa~  192 (247)
T PF05690_consen  119 LVKEGFVVLPYCTDDPVLAKRLEDAGCAAVMPLG---SPIGSG---RGIQNPYNLRIIIERADVPVIVDAGIGTPSDAAQ  192 (247)
T ss_dssp             HHHTT-EEEEEE-S-HHHHHHHHHTT-SEBEEBS---SSTTT------SSTHHHHHHHHHHGSSSBEEES---SHHHHHH
T ss_pred             HHHCCCEEeecCCCCHHHHHHHHHCCCCEEEecc---cccccC---cCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHHH
Confidence            33556643  33 348899999999999997662   001111   1256789999999999999999999998888888


Q ss_pred             HHHcCCCeee
Q 037779          110 LEAIGVDYVD  119 (310)
Q Consensus       110 ~~~aGad~v~  119 (310)
                      +.+.|+|.|+
T Consensus       193 AMElG~daVL  202 (247)
T PF05690_consen  193 AMELGADAVL  202 (247)
T ss_dssp             HHHTT-SEEE
T ss_pred             HHHcCCceee
Confidence            9999999998

ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.

>PRK14567 triosephosphate isomerase; Provisional

Probab=95.98  E-value=0.18  Score=46.05  Aligned_cols=43  Identities=16%  Similarity=0.334  Sum_probs=35.1

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHH
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~  266 (310)
                      +++|  +..|+| +++++.++++.+ .||++||++-.+++++.+.++
T Consensus       202 ~v~I--lYGGSV-~~~N~~~l~~~~diDG~LVGgasL~~~~F~~Ii~  245 (253)
T PRK14567        202 NIKI--VYGGSL-KAENAKDILSLPDVDGGLIGGASLKAAEFNEIIN  245 (253)
T ss_pred             cceE--EEcCcC-CHHHHHHHHcCCCCCEEEeehhhhcHHHHHHHHH
Confidence            4788  579999 799999999886 999999999998665554443

>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]

Probab=95.96  E-value=1  Score=40.26  Aligned_cols=116  Identities=23%  Similarity=0.240  Sum_probs=68.0

Q ss_pred             CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee------ccccc-------hHHHHH
Q 037779           43 VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK------ARIGH-------FVEAQI  109 (310)
Q Consensus        43 ~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k------d~i~~-------~~~~~~  109 (310)
                      .+++-+..+.++||+.| -|    .+--.-+|-  -+++-.++++++..++|+...      ||+-+       .+++..
T Consensus         9 en~~~l~~A~~~GAdRi-EL----C~~La~GG~--TPSyG~~k~a~~~~~ipv~~MIRPRgGdFvY~~~E~~iM~~DI~~   81 (241)
T COG3142           9 ENVEGLLAAQAAGADRI-EL----CDALAEGGL--TPSYGVIKEAVELSKIPVYVMIRPRGGDFVYSDDELEIMLEDIRL   81 (241)
T ss_pred             cCHhhHHHHHHcCCcee-eh----hhccccCCC--CCCHHHHHHHHhhcCCceEEEEecCCCCcccChHHHHHHHHHHHH
Confidence            45788999999999998 44    111122343  456889999999899998763      34322       135566


Q ss_pred             HHHcCCCeee-e--c-CC-CChhHHHHHHHhcCCCCcEEe-----ecCCHHHHH-HHHHhCCCEEEEe
Q 037779          110 LEAIGVDYVD-E--S-EV-LTPADEENHINKHNFRVPFVC-----GCRNLGESL-RRIREGAAMIRTK  166 (310)
Q Consensus       110 ~~~aGad~v~-~--~-~~-~~~~~~~~~~~~~~~~l~v~~-----~v~t~~ea~-~a~~~Gad~I~v~  166 (310)
                      +.++|++.|. .  + +. +..+.+.+.+... -++.+..     .+.++.++. ..+++|+.=|-++
T Consensus        82 ~~~lG~~GVV~G~lt~dg~iD~~~le~Li~aA-~gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILTs  148 (241)
T COG3142          82 ARELGVQGVVLGALTADGNIDMPRLEKLIEAA-GGLGVTFHRAFDECPDPLEALEQLIELGVERILTS  148 (241)
T ss_pred             HHHcCCCcEEEeeecCCCccCHHHHHHHHHHc-cCCceeeehhhhhcCCHHHHHHHHHHCCCcEEecC
Confidence            7779999987 2  2 22 2333444444332 2343322     244555543 4567777555444

>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=95.95  E-value=0.04  Score=52.12  Aligned_cols=95  Identities=31%  Similarity=0.309  Sum_probs=69.5

Q ss_pred             eccCCCccccccceeeecCCccccC-CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC-cce
Q 037779           18 TTKKSPFSVKVGLAQMLRGGVIMDV-VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT-IPV   95 (310)
Q Consensus        18 ~k~~sp~~~~~~~~~~l~~g~i~~~-~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~-lPv   95 (310)
                      ++.+.+   +.|++++.|.|+-... ...+.++.++++|++++.+.-+....  .+.|   ..+.+.|+++++.+. +||
T Consensus       130 ~~~av~---~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgRtr~~--~y~~---~ad~~~I~~vk~~~~~ipv  201 (323)
T COG0042         130 MVEAVG---DIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGRTRAQ--GYLG---PADWDYIKELKEAVPSIPV  201 (323)
T ss_pred             HHHhhC---CCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecccHHh--cCCC---ccCHHHHHHHHHhCCCCeE
Confidence            344444   4789999999996655 34689999999999998544222211  1112   256899999999988 999


Q ss_pred             EeeccccchHHHHHHHH-cCCCeeee
Q 037779           96 MAKARIGHFVEAQILEA-IGVDYVDE  120 (310)
Q Consensus        96 ~~kd~i~~~~~~~~~~~-aGad~v~~  120 (310)
                      +.+..+.+.++++.+.+ .|+|+|-+
T Consensus       202 i~NGdI~s~~~a~~~l~~tg~DgVMi  227 (323)
T COG0042         202 IANGDIKSLEDAKEMLEYTGADGVMI  227 (323)
T ss_pred             EeCCCcCCHHHHHHHHHhhCCCEEEE
Confidence            99998887777765555 78999873

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=95.91  E-value=0.56  Score=41.45  Aligned_cols=114  Identities=18%  Similarity=0.193  Sum_probs=73.4

Q ss_pred             cceEeeccccc-hHHHHHHHHcCCCeeeec-CCCChhHHHHHHHhcCC-CCcEEee-cCCHHHHHHHHHhCCCEEEEecC
Q 037779           93 IPVMAKARIGH-FVEAQILEAIGVDYVDES-EVLTPADEENHINKHNF-RVPFVCG-CRNLGESLRRIREGAAMIRTKGE  168 (310)
Q Consensus        93 lPv~~kd~i~~-~~~~~~~~~aGad~v~~~-~~~~~~~~~~~~~~~~~-~l~v~~~-v~t~~ea~~a~~~Gad~I~v~g~  168 (310)
                      +||+...-... ...++.+.+.|+..+-.+ ......+.++.+.++.. .+.+.++ +-+.+++..+.++|++++..-+.
T Consensus        13 ~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp~~   92 (206)
T PRK09140         13 IAILRGITPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTPNT   92 (206)
T ss_pred             EEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECCCC
Confidence            56655433221 234577788999988644 22233445555655333 4677775 78899999999999999875210


Q ss_pred             CCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCE
Q 037779          169 AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG  248 (310)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~Gadg  248 (310)
                                                              +.++.+.... ..+|++    =|.+|++++.++.++|+|-
T Consensus        93 ----------------------------------------~~~v~~~~~~-~~~~~~----~G~~t~~E~~~A~~~Gad~  127 (206)
T PRK09140         93 ----------------------------------------DPEVIRRAVA-LGMVVM----PGVATPTEAFAALRAGAQA  127 (206)
T ss_pred             ----------------------------------------CHHHHHHHHH-CCCcEE----cccCCHHHHHHHHHcCCCE
Confidence                                                    1233333332 345663    3478999999999999999


Q ss_pred             EEE
Q 037779          249 VFV  251 (310)
Q Consensus       249 V~V  251 (310)
                      +.+
T Consensus       128 vk~  130 (206)
T PRK09140        128 LKL  130 (206)
T ss_pred             EEE
Confidence            985

>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional

Probab=95.90  E-value=1.3  Score=40.52  Aligned_cols=95  Identities=14%  Similarity=0.029  Sum_probs=59.3

Q ss_pred             ceeeecCCc-----cccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHH---HhhcCcceEeeccc
Q 037779           30 LAQMLRGGV-----IMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQI---KSSVTIPVMAKARI  101 (310)
Q Consensus        30 ~~~~l~~g~-----i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i---~~~~~lPv~~kd~i  101 (310)
                      +.++|+.|.     .....+|..++.+...|.|++ .+     |..+  |..   +.+.+..+   .+..+++.+++..-
T Consensus        10 lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~G~D~v-~i-----D~EH--g~~---~~~~~~~~i~a~~~~g~~~lVRvp~   78 (256)
T PRK10558         10 FKAALAAKQVQIGCWSALANPITTEVLGLAGFDWL-VL-----DGEH--APN---DVSTFIPQLMALKGSASAPVVRVPT   78 (256)
T ss_pred             HHHHHHcCCceEEEEEcCCCcHHHHHHHhcCCCEE-EE-----cccc--CCC---CHHHHHHHHHHHhhcCCCcEEECCC
Confidence            445554443     334556899999999999997 33     2222  221   13333333   23456676666544


Q ss_pred             cchHHHHHHHHcCCCeeeecCCCChhHHHHHHHh
Q 037779          102 GHFVEAQILEAIGVDYVDESEVLTPADEENHINK  135 (310)
Q Consensus       102 ~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~  135 (310)
                      .+...++.+.++||+.|..+...+.++..+..+.
T Consensus        79 ~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a  112 (256)
T PRK10558         79 NEPVIIKRLLDIGFYNFLIPFVETAEEARRAVAS  112 (256)
T ss_pred             CCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHH
Confidence            4556778888999999997777677776665543

>PRK12655 fructose-6-phosphate aldolase; Reviewed

Probab=95.85  E-value=1.3  Score=39.68  Aligned_cols=193  Identities=13%  Similarity=0.083  Sum_probs=109.0

Q ss_pred             cCCCHHHHHHHHHcC-CcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc--CcceEeeccccc----hHHHHHHHHc
Q 037779           41 DVVTPEQARIAEEAG-ACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAI  113 (310)
Q Consensus        41 ~~~~~~~a~~~~~~G-a~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~a  113 (310)
                      +..+.+..+.+.+.| .+++. =  .|+=.+ +.|.   ...+.+++|++..  .-|+.+...-.+    .+++..+.+.
T Consensus         6 DtA~~~~i~~~~~~~~i~GvT-T--NPsll~-k~g~---~~~~~~~~i~~~~~~~~~v~~qv~~~d~e~mi~eA~~l~~~   78 (220)
T PRK12655          6 DTANVAEVERLARIFPIAGVT-T--NPSIIA-ASKE---SIWEVLPRLQKAIGGEGILFAQTMSRDAQGMVEEAKRLRNA   78 (220)
T ss_pred             ecCCHHHHHHHHhCCCccEEe-C--CHHHHH-hcCC---CHHHHHHHHHHHhCCCCCEEEEEeeCCHHHHHHHHHHHHHh
Confidence            445667777777765 46652 1  223222 2222   2356778888765  346665543322    2455566666


Q ss_pred             CCCeee-ecCCCChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHHHHHhhcceec
Q 037779          114 GVDYVD-ESEVLTPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRHVRSVMGDIRV  190 (310)
Q Consensus       114 Gad~v~-~~~~~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~  190 (310)
                      +-+.++ ++....--...+.+++.  |+.+.+ -+.|+.++..+..+||+||.+. |+..                    
T Consensus        79 ~~nv~IKIP~T~~Gl~Ai~~L~~~--GI~vn~T~vfs~~Qa~~Aa~aGa~yIspyvgR~~--------------------  136 (220)
T PRK12655         79 IPGIVVKIPVTAEGLAAIKKLKKE--GIPTLGTAVYSAAQGLLAALAGAKYVAPYVNRVD--------------------  136 (220)
T ss_pred             CCCEEEEeCCCHHHHHHHHHHHHC--CCceeEeEecCHHHHHHHHHcCCeEEEeecchHh--------------------
Confidence            655544 55432223455555554  444444 3789999999999999999875 4311                    


Q ss_pred             ccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc----CCCHHHHH
Q 037779          191 LRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK----SGDPVRRA  265 (310)
Q Consensus       191 l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~----~~dp~~~~  265 (310)
                        ....|++       ..-.++...+... .+.-|  + ...+.+++++.+++..|+|.+-+.-.+++    .+-....+
T Consensus       137 --~~g~dg~-------~~i~~~~~~~~~~~~~tkI--L-aAS~r~~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~  204 (220)
T PRK12655        137 --AQGGDGI-------RMVQELQTLLEMHAPESMV--L-AASFKTPRQALDCLLAGCQSITLPLDVAQQMLNTPAVESAI  204 (220)
T ss_pred             --HcCCCHH-------HHHHHHHHHHHhcCCCcEE--E-EEecCCHHHHHHHHHcCCCEEECCHHHHHHHHcCCChHHHH
Confidence              0011111       0012222222222 22334  2 46778999999999999999999886665    44445666


Q ss_pred             HHHHHHHHc
Q 037779          266 RAIVQAVTN  274 (310)
Q Consensus       266 ~~~~~~~~~  274 (310)
                      +.|.+.++.
T Consensus       205 ~~F~~dw~~  213 (220)
T PRK12655        205 EKFEQDWQA  213 (220)
T ss_pred             HHHHHHHHH
Confidence            777666553

>PTZ00333 triosephosphate isomerase; Provisional

Probab=95.84  E-value=0.26  Score=45.04  Aligned_cols=40  Identities=23%  Similarity=0.351  Sum_probs=31.3

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHH
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVRR  264 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~dp~~~  264 (310)
                      ++||  +..|+| +++++.+++. .+.||++||++-+. +++.+.
T Consensus       207 ~~~I--LYGGSV-~~~N~~~l~~~~~vDG~LvG~asl~-~~f~~I  247 (255)
T PTZ00333        207 ATRI--IYGGSV-NEKNCKELIKQPDIDGFLVGGASLK-PDFVDI  247 (255)
T ss_pred             cceE--EEcCCC-CHHHHHHHhcCCCCCEEEEehHhhh-hhHHHH
Confidence            4788  679999 5899988875 69999999999987 344433

>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B

Probab=95.83  E-value=0.082  Score=49.56  Aligned_cols=35  Identities=29%  Similarity=0.467  Sum_probs=30.7

Q ss_pred             EEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          224 VVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       224 Vv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                      +.++++||| +++++.++.++|+|.+.||+.++..+
T Consensus       246 ~~ieaSGgI-~~~~i~~~a~~gvD~isvGs~~~~~~  280 (302)
T cd01571         246 VKIFVSGGL-DEEDIKELEDVGVDAFGVGTAISKAP  280 (302)
T ss_pred             eEEEEeCCC-CHHHHHHHHHcCCCEEECCcccCCCC
Confidence            444789999 69999999999999999999998753

Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.

>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]

Probab=95.80  E-value=1.6  Score=40.44  Aligned_cols=196  Identities=15%  Similarity=0.197  Sum_probs=113.7

Q ss_pred             HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CCC
Q 037779           47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EVL  124 (310)
Q Consensus        47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~~  124 (310)
                      ..+++.+..+..|.+.  -+.-.++.+|..  .-...++.+.+.+++||..+ |.-.+++.+..+..+|-..+-++ +.+
T Consensus        34 ileaA~e~~sPvIiq~--S~g~~~y~gg~~--~~~~~v~~~a~~~~vPV~lHlDHg~~~~~~~~ai~~GFsSvMiDgS~~  109 (286)
T COG0191          34 ILEAAEEEKSPVIIQF--SEGAAKYAGGAD--SLAHMVKALAEKYGVPVALHLDHGASFEDCKQAIRAGFSSVMIDGSHL  109 (286)
T ss_pred             HHHHHHHhCCCEEEEe--cccHHHHhchHH--HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHhcCCceEEecCCcC
Confidence            3556666677776544  111122223321  11345566677788999987 33335677778888998887532 122


Q ss_pred             Chh-------HHHHHHHhcCCCCcEEee-------------------cCCHHHHHHHHHh-CCCEEEEe-cCCCCCchHH
Q 037779          125 TPA-------DEENHINKHNFRVPFVCG-------------------CRNLGESLRRIRE-GAAMIRTK-GEAGTGNIVE  176 (310)
Q Consensus       125 ~~~-------~~~~~~~~~~~~l~v~~~-------------------v~t~~ea~~a~~~-Gad~I~v~-g~~~~~~~~~  176 (310)
                      +.+       ++++.+.+.  ++.+=++                   ..+++|++...+. |.|.+.+. |..++.    
T Consensus       110 ~~eENi~~tkevv~~ah~~--gvsVEaElG~~GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~----  183 (286)
T COG0191         110 PFEENIAITKEVVEFAHAY--GVSVEAELGTLGGEEDGVVLYTDPADLTDPEEALEFVERTGIDALAAAIGNVHGV----  183 (286)
T ss_pred             CHHHHHHHHHHHHHHHHHc--CCcEEEEeccccCccCCcccccchhhhCCHHHHHHHHhccCcceeeeeccccccC----
Confidence            222       333333332  2222111                   2356666665543 57877653 332221    


Q ss_pred             HHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc
Q 037779          177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF  256 (310)
Q Consensus       177 ~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~  256 (310)
                                    ++.  .        ...-+++.++.+.+..++|+|.=-++|| +.+++++.+++|..-|=+.|-+-
T Consensus       184 --------------Yk~--~--------~p~L~~~~L~~i~~~~~~PlVlHGgSGi-p~~eI~~aI~~GV~KvNi~Td~~  238 (286)
T COG0191         184 --------------YKP--G--------NPKLDFDRLKEIQEAVSLPLVLHGGSGI-PDEEIREAIKLGVAKVNIDTDLQ  238 (286)
T ss_pred             --------------CCC--C--------CCCCCHHHHHHHHHHhCCCEEEeCCCCC-CHHHHHHHHHhCceEEeeCcHHH
Confidence                          010  0        0122578889999888899887777788 58999999999999999998654


Q ss_pred             cCCCHHHHHHHHHHHHHcC---CChhhHH
Q 037779          257 KSGDPVRRARAIVQAVTNY---SDPDVLA  282 (310)
Q Consensus       257 ~~~dp~~~~~~~~~~~~~~---~~~~~~~  282 (310)
                      .     ..+..+++.+.++   -||+++.
T Consensus       239 ~-----A~~~avr~~~~~~~k~~DpR~~l  262 (286)
T COG0191         239 L-----AFTAAVREYLAENPKEYDPRKYL  262 (286)
T ss_pred             H-----HHHHHHHHHHHhCcccCCHHHHH
Confidence            4     3444455544444   4676663

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=95.79  E-value=0.067  Score=47.37  Aligned_cols=58  Identities=12%  Similarity=0.189  Sum_probs=42.5

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV  272 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~  272 (310)
                      ..+.++.+++..++||+  .-++|.+++++..++++|||+|.++......    ..++++.+..
T Consensus        60 ~~~~~~~i~~~v~iPi~--~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~----~~~~~~~~~~  117 (217)
T cd00331          60 SLEDLRAVREAVSLPVL--RKDFIIDPYQIYEARAAGADAVLLIVAALDD----EQLKELYELA  117 (217)
T ss_pred             CHHHHHHHHHhcCCCEE--ECCeecCHHHHHHHHHcCCCEEEEeeccCCH----HHHHHHHHHH
Confidence            34566666666689995  4677778889999999999999999987652    4445554443

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=95.77  E-value=0.061  Score=50.68  Aligned_cols=101  Identities=29%  Similarity=0.261  Sum_probs=67.4

Q ss_pred             ccceeeecCCccccCCC-HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHH
Q 037779           28 VGLAQMLRGGVIMDVVT-PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVE  106 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~~~-~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~  106 (310)
                      .|+..++|.|+-....+ .+.++.++++|+++|.+-.+.+. . .+.|   ..+.+.++++++.+++||+.+..+.+.++
T Consensus       132 ~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~-~-~~~~---~~~~~~i~~i~~~~~ipvi~nGgI~~~~d  206 (319)
T TIGR00737       132 IPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRA-Q-GYSG---EANWDIIARVKQAVRIPVIGNGDIFSPED  206 (319)
T ss_pred             CCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEccccc-c-cCCC---chhHHHHHHHHHcCCCcEEEeCCCCCHHH
Confidence            57888888876433223 47899999999999843212111 1 1111   23578899999999999999999987778


Q ss_pred             HHHHH-HcCCCeeeec-CCCChhHHHHHH
Q 037779          107 AQILE-AIGVDYVDES-EVLTPADEENHI  133 (310)
Q Consensus       107 ~~~~~-~aGad~v~~~-~~~~~~~~~~~~  133 (310)
                      ++.+. ..|||.|.+. ..+..+.+...+
T Consensus       207 a~~~l~~~gad~VmigR~~l~~P~l~~~~  235 (319)
T TIGR00737       207 AKAMLETTGCDGVMIGRGALGNPWLFRQI  235 (319)
T ss_pred             HHHHHHhhCCCEEEEChhhhhCChHHHHH
Confidence            87666 5899999743 333333344444

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>PLN02429 triosephosphate isomerase

Probab=95.68  E-value=0.17  Score=47.61  Aligned_cols=43  Identities=19%  Similarity=0.314  Sum_probs=34.1

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHHH
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~dp~~~~~  266 (310)
                      +++|  +..|+| +++++.+++. .++||++||++..+++++...++
T Consensus       263 ~irI--LYGGSV-~~~N~~el~~~~diDG~LVGgASL~~~~F~~Ii~  306 (315)
T PLN02429        263 KTRI--IYGGSV-NGGNSAELAKEEDIDGFLVGGASLKGPEFATIVN  306 (315)
T ss_pred             CceE--EEcCcc-CHHHHHHHhcCCCCCEEEeecceecHHHHHHHHH
Confidence            4677  679999 5888888774 69999999999998666555443

>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase

Probab=95.68  E-value=1.5  Score=39.94  Aligned_cols=88  Identities=15%  Similarity=0.027  Sum_probs=55.8

Q ss_pred             CccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHH---hhcCcceEeeccccchHHHHHHHHc
Q 037779           37 GVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIK---SSVTIPVMAKARIGHFVEAQILEAI  113 (310)
Q Consensus        37 g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~---~~~~lPv~~kd~i~~~~~~~~~~~a  113 (310)
                      |......+|..++.+...|.|++ .+     |..+  |..   +.+.+..+.   +..+++.+++..-.+...++.+.++
T Consensus        15 G~~~~~~sp~~~e~~a~~G~D~v-~i-----D~EH--g~~---~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~LD~   83 (249)
T TIGR03239        15 GCWSALGNPITTEVLGLAGFDWL-LL-----DGEH--APN---DVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRLLDI   83 (249)
T ss_pred             EEEEcCCCcHHHHHHHhcCCCEE-EE-----eccc--CCC---CHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHhcC
Confidence            33445566899999999999997 33     2211  211   133443332   3356666666544555677888999


Q ss_pred             CCCeeeecCCCChhHHHHHHHh
Q 037779          114 GVDYVDESEVLTPADEENHINK  135 (310)
Q Consensus       114 Gad~v~~~~~~~~~~~~~~~~~  135 (310)
                      ||+.|..+...+.++..+..+.
T Consensus        84 Ga~gIivP~v~taeea~~~v~a  105 (249)
T TIGR03239        84 GFYNFLIPFVESAEEAERAVAA  105 (249)
T ss_pred             CCCEEEecCcCCHHHHHHHHHH
Confidence            9999987766667766665543

In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which

>PRK12376 putative translaldolase; Provisional

Probab=95.67  E-value=1.6  Score=39.50  Aligned_cols=173  Identities=15%  Similarity=0.150  Sum_probs=98.4

Q ss_pred             cCCCHHHHHHHHHcC-CcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccc----hHHHHHHHHcC
Q 037779           41 DVVTPEQARIAEEAG-ACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGH----FVEAQILEAIG  114 (310)
Q Consensus        41 ~~~~~~~a~~~~~~G-a~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~----~~~~~~~~~aG  114 (310)
                      +..+.+..+.+.+.| .+++- =|  |+-.+ +.|.  ..-.+.+++|++.. +-||.+...-.+    .+++..+.+.+
T Consensus        11 DtAd~~eik~~~~~g~i~GVT-TN--Psll~-k~g~--~~~~~~~~~i~~~~~~~~vs~EV~~~d~~~mv~eA~~l~~~~   84 (236)
T PRK12376         11 DGADLEEMLAAYKNPLVKGFT-TN--PSLMR-KAGV--TDYKAFAKEVLAEIPDAPISFEVFADDLETMEKEAEKIASLG   84 (236)
T ss_pred             ecCCHHHHHHHHhCCCeeEEE-CC--HHHHH-hcCC--CCHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHHHHhC
Confidence            456778888888877 46662 22  23222 2221  11245677888777 357776543332    24556666676


Q ss_pred             CCeee-ecCCC----ChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHh----CCCEEEEe-cCCCCCchHHHHHHHHH
Q 037779          115 VDYVD-ESEVL----TPADEENHINKHNFRVPFVCG-CRNLGESLRRIRE----GAAMIRTK-GEAGTGNIVEAVRHVRS  183 (310)
Q Consensus       115 ad~v~-~~~~~----~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~----Gad~I~v~-g~~~~~~~~~~~~~~~~  183 (310)
                      -+.++ ++...    .--..++.+.+.+  +.+-+. +.|+.++..+.++    |++|+.+. |+...            
T Consensus        85 ~nv~VKIP~T~~~G~~gl~Ai~~L~~~G--I~vn~T~vfs~~Qa~~a~~A~ag~ga~yispfvgR~dd------------  150 (236)
T PRK12376         85 ENVYVKIPITNTKGESTIPLIKKLSADG--VKLNVTAIFTIEQVKEVVDALTPGVPAIVSVFAGRIAD------------  150 (236)
T ss_pred             CCeEEEECCcCccchhHHHHHHHHHHCC--CeEEEeeecCHHHHHHHHHHhcCCCCeEEEEecchhhh------------
Confidence            55554 54321    1134455555544  443332 6788888654443    59999876 44211            


Q ss_pred             hhcceecccccCchhHHhhhccCCCcHHHHHHHH----hcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          184 VMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTK----QLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       184 ~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~----~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                                ...|           +..+++.+.    ...+.-|+   ..-+.++.++.++..+|||.+-+.-.+++
T Consensus       151 ----------~g~D-----------~~~~i~~i~~i~~~~~~tkIL---aASiR~~~~v~~a~~~Gad~vTvp~~v~~  204 (236)
T PRK12376        151 ----------TGVD-----------PVPLMKEALAICHSKPGVELL---WASPREVYNIIQADQLGCDIITVTPDVLK  204 (236)
T ss_pred             ----------cCCC-----------cHHHHHHHHHHHHhCCCcEEE---EEecCCHHHHHHHHHcCCCEEEcCHHHHH
Confidence                      0111           223333332    22233443   47789999999999999999999876655

>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family

Probab=95.65  E-value=0.064  Score=46.19  Aligned_cols=127  Identities=15%  Similarity=0.231  Sum_probs=67.0

Q ss_pred             hHHHHHHHhhcCcceEe-ecccc----chHHHHHHHHcC-CCeeeecCCCChhHHHHHHHhcCCC---CcEEeecCCHHH
Q 037779           81 PQLIKQIKSSVTIPVMA-KARIG----HFVEAQILEAIG-VDYVDESEVLTPADEENHINKHNFR---VPFVCGCRNLGE  151 (310)
Q Consensus        81 ~~~i~~i~~~~~lPv~~-kd~i~----~~~~~~~~~~aG-ad~v~~~~~~~~~~~~~~~~~~~~~---l~v~~~v~t~~e  151 (310)
                      .+.++.++++ +..+++ -|.+.    +..-++-+...+ +|+|+.+    -..+++..++.+.-   -.++.+..+.+-
T Consensus        34 ~~~v~~~~~~-gK~vfVHiDli~Gl~~D~~~i~~L~~~~~~dGIIST----k~~~i~~Ak~~gl~tIqRiFliDS~al~~  108 (175)
T PF04309_consen   34 KDIVKRLKAA-GKKVFVHIDLIEGLSRDEAGIEYLKEYGKPDGIIST----KSNLIKRAKKLGLLTIQRIFLIDSSALET  108 (175)
T ss_dssp             HHHHHHHHHT-T-EEEEECCGEETB-SSHHHHHHHHHTT--SEEEES----SHHHHHHHHHTT-EEEEEEE-SSHHHHHH
T ss_pred             HHHHHHHHHc-CCEEEEEehhcCCCCCCHHHHHHHHHcCCCcEEEeC----CHHHHHHHHHcCCEEEEEeeeecHHHHHH
Confidence            4556666554 444444 34442    222334455544 8888643    34556666654321   123334444443


Q ss_pred             HHHHH-HhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccC
Q 037779          152 SLRRI-REGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAG  230 (310)
Q Consensus       152 a~~a~-~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~G  230 (310)
                      ..+.. +..+|+|=+.                         |.              .-...++.+++..++|+  ||+|
T Consensus       109 ~~~~i~~~~PD~vEil-------------------------Pg--------------~~p~vi~~i~~~~~~Pi--IAGG  147 (175)
T PF04309_consen  109 GIKQIEQSKPDAVEIL-------------------------PG--------------VMPKVIKKIREETNIPI--IAGG  147 (175)
T ss_dssp             HHHHHHHHT-SEEEEE-------------------------SC--------------CHHHHHCCCCCCCSS-E--EEES
T ss_pred             HHHHHhhcCCCEEEEc-------------------------hH--------------HHHHHHHHHHHhcCCCE--Eeec
Confidence            33333 4566666553                         11              11235555666667899  7788


Q ss_pred             CCCCHHHHHHHHHcCCCEEEEcc
Q 037779          231 GVATPADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       231 GI~t~~di~~~~~~GadgV~VGs  253 (310)
                      =|.+.+++.+++++||.+|...+
T Consensus       148 LI~~~e~v~~al~aGa~aVSTS~  170 (175)
T PF04309_consen  148 LIRTKEDVEEALKAGADAVSTSN  170 (175)
T ss_dssp             S--SHHHHHHHCCTTCEEEEE--
T ss_pred             ccCCHHHHHHHHHcCCEEEEcCC
Confidence            89999999999999999998765

Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.

>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]

Probab=95.64  E-value=0.52  Score=43.07  Aligned_cols=171  Identities=18%  Similarity=0.211  Sum_probs=96.7

Q ss_pred             HHHHHHHHcCCcEEEecccc-cchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-ecCC
Q 037779           46 EQARIAEEAGACAVMALERV-PADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEV  123 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~-~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~  123 (310)
                      +.|+...++|++.+---.+. .|.+-.|+|-. ..-+..++++++.+++|++--.+  +..+++...++ +|.+- +...
T Consensus        63 ~~A~~vk~~Ga~~lRGgafKPRTSPYsFQGlg-e~gL~~l~~a~~~~Gl~vvtEvm--~~~~~e~~~~y-~DilqvGARN  138 (286)
T COG2876          63 ETAESVKAAGAKALRGGAFKPRTSPYSFQGLG-EEGLKLLKRAADETGLPVVTEVM--DVRDVEAAAEY-ADILQVGARN  138 (286)
T ss_pred             HHHHHHHHcchhhccCCcCCCCCCcccccccC-HHHHHHHHHHHHHcCCeeEEEec--CHHHHHHHHhh-hhHHHhcccc
Confidence            45899999999986111111 23445565432 23466788889999999976432  33455555555 56554 3333


Q ss_pred             CChhHHHHHHHhcCCCCcEEee---cCCHHHHHHHHH----hCCC-EEEEe-cCCCCCchHHHHHHHHHhhcceeccccc
Q 037779          124 LTPADEENHINKHNFRVPFVCG---CRNLGESLRRIR----EGAA-MIRTK-GEAGTGNIVEAVRHVRSVMGDIRVLRNM  194 (310)
Q Consensus       124 ~~~~~~~~~~~~~~~~l~v~~~---v~t~~ea~~a~~----~Gad-~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~  194 (310)
                      +....+.+.+.+  .+.+++..   .+|.+|-..|++    .|.. +|--. |-                    |.+.+.
T Consensus       139 MQNF~LLke~G~--~~kPvLLKRg~~aTieEwL~AAEYI~s~GN~~vILCERGI--------------------Rtfe~~  196 (286)
T COG2876         139 MQNFALLKEVGR--QNKPVLLKRGLSATIEEWLNAAEYILSHGNGNVILCERGI--------------------RTFEKA  196 (286)
T ss_pred             hhhhHHHHHhcc--cCCCeEEecCccccHHHHHHHHHHHHhCCCCcEEEEeccc--------------------cccccc
Confidence            445555555544  34566553   467777665554    3442 22211 11                    111111


Q ss_pred             CchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHH-----HHHHHHcCCCEEEEc
Q 037779          195 DDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPAD-----AAMMMQLGCDGVFVG  252 (310)
Q Consensus       195 ~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~d-----i~~~~~~GadgV~VG  252 (310)
                      ++         ..-+...+..+++..++||++-.+.+-+ ..+     +..++..||||+++=
T Consensus       197 TR---------ntLDi~aV~~~kq~THLPVivDpSH~~G-rr~lv~pla~AA~AaGAdglmiE  249 (286)
T COG2876         197 TR---------NTLDISAVPILKQETHLPVIVDPSHATG-RRDLVEPLAKAAIAAGADGLMIE  249 (286)
T ss_pred             cc---------ceechHHHHHHHhhcCCCEEECCCCccc-chhhHHHHHHHHHhccCCeeEEE
Confidence            11         1224566777888889999876666543 333     345567899999873

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=95.60  E-value=0.22  Score=49.98  Aligned_cols=111  Identities=23%  Similarity=0.261  Sum_probs=74.4

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeee---
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDE---  120 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~---  120 (310)
                      .+-++.+.++|++.| .+     |..  .|. .....+.++.+++.. ++++++++. .+.+.++.+.++|||.|..   
T Consensus       250 ~~r~~~l~~ag~d~i-~i-----D~~--~g~-~~~~~~~i~~ik~~~p~~~vi~g~v-~t~e~a~~a~~aGaD~i~vg~g  319 (505)
T PLN02274        250 KERLEHLVKAGVDVV-VL-----DSS--QGD-SIYQLEMIKYIKKTYPELDVIGGNV-VTMYQAQNLIQAGVDGLRVGMG  319 (505)
T ss_pred             HHHHHHHHHcCCCEE-EE-----eCC--CCC-cHHHHHHHHHHHHhCCCCcEEEecC-CCHHHHHHHHHcCcCEEEECCC
Confidence            588999999999988 33     322  121 011246889999876 688876544 3457888999999999852   


Q ss_pred             ------cCC--------CChhHHHHHHHhcCCCCcEEee--cCCHHHHHHHHHhCCCEEEEe
Q 037779          121 ------SEV--------LTPADEENHINKHNFRVPFVCG--CRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       121 ------~~~--------~~~~~~~~~~~~~~~~l~v~~~--v~t~~ea~~a~~~Gad~I~v~  166 (310)
                            +..        ++.......+. +..+++++++  +++..++.+|+.+||+.+.+.
T Consensus       320 ~G~~~~t~~~~~~g~~~~~~i~~~~~~~-~~~~vpVIadGGI~~~~di~kAla~GA~~V~vG  380 (505)
T PLN02274        320 SGSICTTQEVCAVGRGQATAVYKVASIA-AQHGVPVIADGGISNSGHIVKALTLGASTVMMG  380 (505)
T ss_pred             CCccccCccccccCCCcccHHHHHHHHH-HhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence                  100        01111122222 2246888885  999999999999999999874

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=95.55  E-value=1.1  Score=38.87  Aligned_cols=126  Identities=17%  Similarity=0.198  Sum_probs=78.4

Q ss_pred             hHHHHHHHhhcCcceEeeccccc-hHHHHHHHHcCCCeeeec-CCCChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHH
Q 037779           81 PQLIKQIKSSVTIPVMAKARIGH-FVEAQILEAIGVDYVDES-EVLTPADEENHINKHNFRVPFVC-GCRNLGESLRRIR  157 (310)
Q Consensus        81 ~~~i~~i~~~~~lPv~~kd~i~~-~~~~~~~~~aGad~v~~~-~~~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~  157 (310)
                      .+.++.+.+.-=+||+......+ .+.++.+.+.|++.+-.. ...+..++++.+++....+.... .+-+.+++..+.+
T Consensus         3 ~~~~~~l~~~~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~   82 (187)
T PRK07455          3 QDWLAQLQQHRAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILTLEDLEEAIA   82 (187)
T ss_pred             hHHHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHH
Confidence            34555565444467766543332 245677788999998743 23345677777766444343333 4566789999999


Q ss_pred             hCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHH
Q 037779          158 EGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPAD  237 (310)
Q Consensus       158 ~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~d  237 (310)
                      .|+|++..-..                                        +.+..+.. +...++.+ +  | .+|+++
T Consensus        83 ~gAdgv~~p~~----------------------------------------~~~~~~~~-~~~~~~~i-~--G-~~t~~e  117 (187)
T PRK07455         83 AGAQFCFTPHV----------------------------------------DPELIEAA-VAQDIPII-P--G-ALTPTE  117 (187)
T ss_pred             cCCCEEECCCC----------------------------------------CHHHHHHH-HHcCCCEE-c--C-cCCHHH
Confidence            99998865210                                        11111211 12234653 3  5 899999


Q ss_pred             HHHHHHcCCCEEEE
Q 037779          238 AAMMMQLGCDGVFV  251 (310)
Q Consensus       238 i~~~~~~GadgV~V  251 (310)
                      +.++.+.|+|-|-+
T Consensus       118 ~~~A~~~Gadyv~~  131 (187)
T PRK07455        118 IVTAWQAGASCVKV  131 (187)
T ss_pred             HHHHHHCCCCEEEE
Confidence            99999999999987

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=95.45  E-value=0.17  Score=50.51  Aligned_cols=112  Identities=13%  Similarity=0.126  Sum_probs=76.6

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeee---e
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVD---E  120 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~---~  120 (310)
                      ++.++.+.++|++.| .+     |.....+   ..-.+.+++|++.. +++|++.+. .+.+.++.+.++|||.|-   .
T Consensus       229 ~~~a~~Lv~aGvd~i-~~-----D~a~~~~---~~~~~~i~~ik~~~p~~~v~agnv-~t~~~a~~l~~aGad~v~vgig  298 (479)
T PRK07807        229 AAKARALLEAGVDVL-VV-----DTAHGHQ---EKMLEALRAVRALDPGVPIVAGNV-VTAEGTRDLVEAGADIVKVGVG  298 (479)
T ss_pred             HHHHHHHHHhCCCEE-EE-----eccCCcc---HHHHHHHHHHHHHCCCCeEEeecc-CCHHHHHHHHHcCCCEEEECcc
Confidence            588999999999997 33     3322211   12266788999886 788888543 345788899999999985   1


Q ss_pred             c------CC---CChh--HHHHHHHh--cCCCCcEEee--cCCHHHHHHHHHhCCCEEEEe
Q 037779          121 S------EV---LTPA--DEENHINK--HNFRVPFVCG--CRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       121 ~------~~---~~~~--~~~~~~~~--~~~~l~v~~~--v~t~~ea~~a~~~Gad~I~v~  166 (310)
                      +      ..   ...+  ..+..+.+  +..+++++++  +++..++.+++.+||+.+.+.
T Consensus       299 ~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g  359 (479)
T PRK07807        299 PGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIG  359 (479)
T ss_pred             CCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeecc
Confidence            1      11   1112  22333322  2357888885  999999999999999999875

>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]

Probab=95.40  E-value=1.8  Score=38.28  Aligned_cols=112  Identities=16%  Similarity=0.153  Sum_probs=68.0

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-CC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-EV  123 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~~  123 (310)
                      .+.++.+.++|++.| .+.  -|+...-.|+    -.++++. .+..+.-++..  ..++++...+..+|+|+|=.+ ..
T Consensus        88 lkeVd~L~~~Ga~II-A~D--aT~R~RP~~~----~~~~i~~-~k~~~~l~MAD--~St~ee~l~a~~~G~D~IGTTLsG  157 (229)
T COG3010          88 LKEVDALAEAGADII-AFD--ATDRPRPDGD----LEELIAR-IKYPGQLAMAD--CSTFEEGLNAHKLGFDIIGTTLSG  157 (229)
T ss_pred             HHHHHHHHHCCCcEE-Eee--cccCCCCcch----HHHHHHH-hhcCCcEEEec--cCCHHHHHHHHHcCCcEEeccccc
Confidence            377999999999987 220  0111100011    0223333 23334444333  445678888889999998411 11


Q ss_pred             ---------CChhHHHHHHHhcCCCCcEEee--cCCHHHHHHHHHhCCCEEEEecC
Q 037779          124 ---------LTPADEENHINKHNFRVPFVCG--CRNLGESLRRIREGAAMIRTKGE  168 (310)
Q Consensus       124 ---------~~~~~~~~~~~~~~~~l~v~~~--v~t~~ea~~a~~~Gad~I~v~g~  168 (310)
                               .+..++++.+.+  .+..++++  .+|++.+.++.+.|++.|.|.+.
T Consensus       158 YT~~~~~~~~pDf~lvk~l~~--~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsA  211 (229)
T COG3010         158 YTGYTEKPTEPDFQLVKQLSD--AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSA  211 (229)
T ss_pred             ccCCCCCCCCCcHHHHHHHHh--CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcc
Confidence                     112245555544  67888886  89999999999999999998644

>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=95.39  E-value=1.4  Score=42.10  Aligned_cols=177  Identities=14%  Similarity=0.168  Sum_probs=103.3

Q ss_pred             HHHHHHHHcCCcEEEeccccc-chhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-CC
Q 037779           46 EQARIAEEAGACAVMALERVP-ADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-EV  123 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~-~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~~  123 (310)
                      ++|+.+.+.|+..+--.-+.| |.+..|.|.. ...+..++++++.+++|++--.+  +...++.+.+. +|.+-+. ..
T Consensus       119 ~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g-~~gl~~L~~~~~e~Gl~~~tev~--d~~~v~~~~~~-~d~lqIga~~  194 (352)
T PRK13396        119 ETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHG-ESALELLAAAREATGLGIITEVM--DAADLEKIAEV-ADVIQVGARN  194 (352)
T ss_pred             HHHHHHHHcCCCEEEeeeecCCCCCcccCCch-HHHHHHHHHHHHHcCCcEEEeeC--CHHHHHHHHhh-CCeEEECccc
Confidence            679999999998752111111 2233344432 23366778888899999976533  33566667777 7887643 33


Q ss_pred             CChhHHHHHHHhcCCCCcEEee--cC-CHHHHHHHHH----hCC-CEEEEe-cC-CCCCchHHHHHHHHHhhcceecccc
Q 037779          124 LTPADEENHINKHNFRVPFVCG--CR-NLGESLRRIR----EGA-AMIRTK-GE-AGTGNIVEAVRHVRSVMGDIRVLRN  193 (310)
Q Consensus       124 ~~~~~~~~~~~~~~~~l~v~~~--v~-t~~ea~~a~~----~Ga-d~I~v~-g~-~~~~~~~~~~~~~~~~~~~~~~l~~  193 (310)
                      .....+++.+.+  .+.++++.  .. |.+|...+++    .|. +++-.+ |. .|..                   .|
T Consensus       195 ~~n~~LL~~va~--t~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s-------------------~y  253 (352)
T PRK13396        195 MQNFSLLKKVGA--QDKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDR-------------------QY  253 (352)
T ss_pred             ccCHHHHHHHHc--cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcC-------------------CC
Confidence            445566666654  45677765  34 7787766654    465 344443 21 1110                   01


Q ss_pred             cCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCC----HHHHHHHHHcCCCEEEEcccccc
Q 037779          194 MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVAT----PADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       194 ~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t----~~di~~~~~~GadgV~VGsai~~  257 (310)
                       +         ....++..+..+++..++||++-++=+++.    +.-...++.+||||+++=.-+.-
T Consensus       254 -~---------~~~~dl~ai~~lk~~~~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~~p  311 (352)
T PRK13396        254 -T---------RNTLDLSVIPVLRSLTHLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHPNP  311 (352)
T ss_pred             -C---------CCCcCHHHHHHHHHhhCCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecCCc
Confidence             0         112356677777776678997554433332    23345666789999999876654

>PRK13957 indole-3-glycerol-phosphate synthase; Provisional

Probab=95.38  E-value=0.42  Score=43.46  Aligned_cols=86  Identities=12%  Similarity=0.257  Sum_probs=61.3

Q ss_pred             CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcC-CCh-------h
Q 037779          208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY-SDP-------D  279 (310)
Q Consensus       208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~-~~~-------~  279 (310)
                      .+.+.++.+++..++||  +.-..|-++.++.+...+|||+|++--+++..    +.+++|.+..... .+|       .
T Consensus        89 Gs~~~l~~v~~~v~~Pv--L~KDFIid~~QI~ea~~~GADavLLI~~~L~~----~~l~~l~~~a~~lGle~LVEVh~~~  162 (247)
T PRK13957         89 GSLEDLKSVSSELKIPV--LRKDFILDEIQIREARAFGASAILLIVRILTP----SQIKSFLKHASSLGMDVLVEVHTED  162 (247)
T ss_pred             CCHHHHHHHHHhcCCCE--EeccccCCHHHHHHHHHcCCCEEEeEHhhCCH----HHHHHHHHHHHHcCCceEEEECCHH
Confidence            35677788888778999  56899999999999999999999998888862    3455555554442 232       2


Q ss_pred             hHHhhhhccCCceeccccccc
Q 037779          280 VLAEVSCGLGEAMVGIDLNDV  300 (310)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~  300 (310)
                      - .+.+-..|..+.||.=.|.
T Consensus       163 E-l~~a~~~ga~iiGINnRdL  182 (247)
T PRK13957        163 E-AKLALDCGAEIIGINTRDL  182 (247)
T ss_pred             H-HHHHHhCCCCEEEEeCCCC
Confidence            2 2334556888888865543

>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants

Probab=95.35  E-value=2.1  Score=39.50  Aligned_cols=83  Identities=17%  Similarity=0.185  Sum_probs=46.3

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCC-CCCCChH---HHHHHHhhc--CcceEeecccc----chHHHHHHHHcC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGV-ARMSDPQ---LIKQIKSSV--TIPVMAKARIG----HFVEAQILEAIG  114 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~-~~~~~~~---~i~~i~~~~--~lPv~~kd~i~----~~~~~~~~~~aG  114 (310)
                      .+.++.+.+.|++++...-        ..|. ..+...+   .++.+.+..  ++||++...-.    ..+.++.+.++|
T Consensus        25 ~~~i~~l~~~Gv~gl~~~G--------stGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~G   96 (289)
T PF00701_consen   25 KRLIDFLIEAGVDGLVVLG--------STGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAG   96 (289)
T ss_dssp             HHHHHHHHHTTSSEEEESS--------TTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCEEEECC--------CCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcC
Confidence            3779999999999985441        0111 1122222   333444433  58998874432    135667888899


Q ss_pred             CCeee-ecC---CCChhHHHHHHHh
Q 037779          115 VDYVD-ESE---VLTPADEENHINK  135 (310)
Q Consensus       115 ad~v~-~~~---~~~~~~~~~~~~~  135 (310)
                      ||++. .+.   ..+..++.+.++.
T Consensus        97 ad~v~v~~P~~~~~s~~~l~~y~~~  121 (289)
T PF00701_consen   97 ADAVLVIPPYYFKPSQEELIDYFRA  121 (289)
T ss_dssp             -SEEEEEESTSSSCCHHHHHHHHHH
T ss_pred             ceEEEEeccccccchhhHHHHHHHH
Confidence            99987 321   1345555555543

The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....

>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=95.34  E-value=2.7  Score=40.12  Aligned_cols=179  Identities=11%  Similarity=0.049  Sum_probs=101.7

Q ss_pred             HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEee-ccccchHHHHHHHHcCCCeeeec-CC
Q 037779           47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EV  123 (310)
Q Consensus        47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~  123 (310)
                      +.+++++.++..|.++.  +...+ +.|...  -...++.+.+.. .+||.++ |.-.+++.+..+.++|-+.|-++ +.
T Consensus        34 vi~AAee~~sPvIiq~s--~~~~~-~~g~~~--~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSVMiDgS~  108 (347)
T PRK09196         34 IMEAADETDSPVILQAS--AGARK-YAGEPF--LRHLILAAVEEYPHIPVVMHQDHGNSPATCQRAIQLGFTSVMMDGSL  108 (347)
T ss_pred             HHHHHHHhCCCEEEECC--ccHhh-hCCHHH--HHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcCCCEEEecCCC
Confidence            47777788888876652  11111 222100  022344445455 4899886 33345677788888999998733 22


Q ss_pred             C-------Chh-------HHHHHHHhcCCCCcEEee-----------------------------cCCHHHHHHHH-HhC
Q 037779          124 L-------TPA-------DEENHINKHNFRVPFVCG-----------------------------CRNLGESLRRI-REG  159 (310)
Q Consensus       124 ~-------~~~-------~~~~~~~~~~~~l~v~~~-----------------------------v~t~~ea~~a~-~~G  159 (310)
                      +       +.+       ++++..+..+  +.+=.+                             .++++|+++-. +.|
T Consensus       109 l~~~~~~~p~eENI~~Tkevve~Ah~~G--v~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~Tg  186 (347)
T PRK09196        109 KADGKTPASYEYNVDVTRKVVEMAHACG--VSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQ  186 (347)
T ss_pred             CcccCCCCCHHHHHHHHHHHHHHHHHcC--CeEEEEEeeccCccccccccccCcccccccchhhcCCCHHHHHHHHHHhC
Confidence            2       222       2333333222  211111                             34677777665 568


Q ss_pred             CCEEEEe-cCCCCCchHHHHHHHHHhhcceecccc-cCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCC---
Q 037779          160 AAMIRTK-GEAGTGNIVEAVRHVRSVMGDIRVLRN-MDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVA---  233 (310)
Q Consensus       160 ad~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~---  233 (310)
                      +|.+.+. |..++.                  ++. ..+.       ...-++++++.|.+.. ++|+|.=-++|+.   
T Consensus       187 vD~LAvaiGT~HG~------------------Yk~~~~p~-------~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~  241 (347)
T PRK09196        187 VDALAIAIGTSHGA------------------YKFTRKPT-------GDVLAIDRIKEIHARLPNTHLVMHGSSSVPQEL  241 (347)
T ss_pred             cCeEhhhhccccCC------------------CCCCCCCC-------hhhccHHHHHHHHhcCCCCCEEEeCCCCCCHHH
Confidence            8887653 332221                  010 0000       0012688889888877 7998764444441   


Q ss_pred             -----------------CHHHHHHHHHcCCCEEEEcccccc
Q 037779          234 -----------------TPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       234 -----------------t~~di~~~~~~GadgV~VGsai~~  257 (310)
                                       ..++++++.++|..-|=++|.+..
T Consensus       242 ~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~  282 (347)
T PRK09196        242 LDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNIDTDLRL  282 (347)
T ss_pred             HHHHHHhcCCccccCCCCHHHHHHHHHCCCceEEeChHHHH
Confidence                             358899999999999999998865

>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]

Probab=95.34  E-value=0.85  Score=40.59  Aligned_cols=136  Identities=17%  Similarity=0.216  Sum_probs=76.9

Q ss_pred             hHHHHHHHHcCCCeeee-c-----C----------CCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEe
Q 037779          104 FVEAQILEAIGVDYVDE-S-----E----------VLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       104 ~~~~~~~~~aGad~v~~-~-----~----------~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                      .+..+.+..+|...|.. +     +          .+.....++.++. |..++....-+.|++|+..+.+.|+|+|..|
T Consensus       104 ~~~L~~L~~~gf~gV~NFPTv~~iDG~~R~~lEetGmG~~~Evemlr~A~~k~l~t~~yV~s~~eAqa~~~aGadiiv~h  183 (276)
T COG5564         104 VDFLKELKTAGFSGVQNFPTVGLIDGRMRASLEETGMGYGLEVEMLREAHAKDLLTTPYVFSFEEAQAMTKAGADIIVAH  183 (276)
T ss_pred             HHHHHHHHhcCCcccccCCeeEEecchhhhhHHHhCcchHHHHHHHHHHHhccccccceecCHHHHHHHHHcCcceeeec
Confidence            35667788888877651 1     1          1112233445544 5556766777889999999999999999876


Q ss_pred             -cCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHH--
Q 037779          167 -GEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ--  243 (310)
Q Consensus       167 -g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~--  243 (310)
                       |+.-++.+-              ..+.++.+...+.   ...-.+..+.+.+. -+|+  .-.|=|.+|+|.+-.+.  
T Consensus       184 mg~ttgG~Ig--------------ar~~~Sl~~~vel---~~~~~~aar~v~kd-~i~l--~~GGPi~~p~da~yi~d~c  243 (276)
T COG5564         184 MGLTTGGLIG--------------ARSALSLADCVEL---IELAAEAARGVRKD-VIPL--CHGGPISMPEDARYILDRC  243 (276)
T ss_pred             ccccccceec--------------cccccCHHHHHHH---HHHHHHHHhhhhhc-eeee--ccCCCcCCchhhHHHHhhC
Confidence             554333321              1111111110000   00011112222221 1344  34566999999988886  


Q ss_pred             cCCCEEEEccccccCC
Q 037779          244 LGCDGVFVGSGVFKSG  259 (310)
Q Consensus       244 ~GadgV~VGsai~~~~  259 (310)
                      -|+||+.=+|.+-+-+
T Consensus       244 ~~~~gfygassmerlp  259 (276)
T COG5564         244 PGCDGFYGASSMERLP  259 (276)
T ss_pred             CCCCcccccchhhccc
Confidence            3999999999877643

>cd00408 DHDPS-like Dihydrodipicolinate synthase family

Probab=95.33  E-value=2.2  Score=39.06  Aligned_cols=82  Identities=22%  Similarity=0.258  Sum_probs=47.1

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCC-CCCC---hHHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVA-RMSD---PQLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGV  115 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~-~~~~---~~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGa  115 (310)
                      +.++.+.+.|++++...-        ..|.. .+..   .+.++.+++.+  ++||++...-..    .+.++.+.++|+
T Consensus        22 ~~i~~l~~~Gv~gi~~~G--------stGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Ga   93 (281)
T cd00408          22 RLVEFLIEAGVDGLVVLG--------TTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGA   93 (281)
T ss_pred             HHHHHHHHcCCCEEEECC--------CCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCC
Confidence            678999999999984331        01111 1111   23445555554  589988754432    245667788999


Q ss_pred             Ceeee-cCC---CChhHHHHHHHh
Q 037779          116 DYVDE-SEV---LTPADEENHINK  135 (310)
Q Consensus       116 d~v~~-~~~---~~~~~~~~~~~~  135 (310)
                      |.+.. +..   .+..++.+.++.
T Consensus        94 d~v~v~pP~y~~~~~~~~~~~~~~  117 (281)
T cd00408          94 DGVLVVPPYYNKPSQEGIVAHFKA  117 (281)
T ss_pred             CEEEECCCcCCCCCHHHHHHHHHH
Confidence            99873 211   234455555543

A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.

>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional

Probab=95.33  E-value=2.8  Score=40.09  Aligned_cols=179  Identities=11%  Similarity=0.063  Sum_probs=100.4

Q ss_pred             HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEee-ccccchHHHHHHHHcCCCeeeec-CC
Q 037779           47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EV  123 (310)
Q Consensus        47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~  123 (310)
                      +.+++++.++..|.++.  +... .+.|...  -...++.+.+.. .+||.++ |.-.+++.+..+.++|-+.|-++ +.
T Consensus        34 vi~AAEe~~sPvIlq~s--~~~~-~~~g~~~--~~~~v~~~ae~~~~VPVaLHLDHg~~~e~i~~Ai~~GFtSVMiDgS~  108 (347)
T PRK13399         34 IMEAAEATDSPVILQAS--RGAR-KYAGDAM--LRHMVLAAAEMYPDIPICLHQDHGNSPATCQSAIRSGFTSVMMDGSL  108 (347)
T ss_pred             HHHHHHHhCCCEEEECC--cchh-hhCCHHH--HHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHhcCCCEEEEeCCC
Confidence            46777777888876652  1111 1222100  122344555556 4899886 44445678888899999998733 21


Q ss_pred             CC-------hh-------HHHHHHHhcCCCCcEEee-----------------------------cCCHHHHHHHH-HhC
Q 037779          124 LT-------PA-------DEENHINKHNFRVPFVCG-----------------------------CRNLGESLRRI-REG  159 (310)
Q Consensus       124 ~~-------~~-------~~~~~~~~~~~~l~v~~~-----------------------------v~t~~ea~~a~-~~G  159 (310)
                      ++       .+       ++++..+..+  +.+=++                             .++++|+..-. +.|
T Consensus       109 l~~~~~~~~~eeNI~~Trevve~Ah~~G--vsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~Tg  186 (347)
T PRK13399        109 LADGKTPASYDYNVDVTRRVTEMAHAVG--VSVEGELGCLGSLETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFVQRTG  186 (347)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHcC--CeEEEEeeeccCcccccccccCCccccccccccccCCCHHHHHHHHHHHC
Confidence            22       12       2333333222  211111                             34567776655 458


Q ss_pred             CCEEEEe-cCCCCCchHHHHHHHHHhhcceecccc-cCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCC---
Q 037779          160 AAMIRTK-GEAGTGNIVEAVRHVRSVMGDIRVLRN-MDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVA---  233 (310)
Q Consensus       160 ad~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~---  233 (310)
                      +|.+.+. |..++.                  ++. ..++       ...-++++++.|.+.. ++|+|.=-++|+.   
T Consensus       187 vD~LAvaiGt~HG~------------------Yk~~~~p~-------~~~L~~drl~eI~~~v~~vPLVLHGgSGvp~~~  241 (347)
T PRK13399        187 VDALAIAIGTSHGA------------------YKFTRKPD-------GDILAIDRIEEIHARLPNTHLVMHGSSSVPQEL  241 (347)
T ss_pred             cCEEhhhhccccCC------------------cCCCCCCC-------hhhccHHHHHHHHhhcCCCCEEEeCCCCCCHHH
Confidence            8877553 332221                  010 0010       0012578888998876 6998754344432   


Q ss_pred             -----------------CHHHHHHHHHcCCCEEEEcccccc
Q 037779          234 -----------------TPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       234 -----------------t~~di~~~~~~GadgV~VGsai~~  257 (310)
                                       ..++++++++.|..-|=++|.+..
T Consensus       242 ~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KINi~Tdl~~  282 (347)
T PRK13399        242 QEIINAYGGKMKETYGVPVEEIQRGIKHGVRKVNIDTDIRL  282 (347)
T ss_pred             HHHHHHhcCCccccCCCCHHHHHHHHHCCCeEEEeChHHHH
Confidence                             148899999999999999998765

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=95.30  E-value=0.082  Score=46.98  Aligned_cols=88  Identities=31%  Similarity=0.272  Sum_probs=60.0

Q ss_pred             ccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHH
Q 037779           28 VGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEA  107 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~  107 (310)
                      .++..+++.|+-......++++.+.+.|++.|+.-.+.. +.+..    ...+.+.++++++.+++||++...+.+.+++
T Consensus       124 ~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~-~~~~~----~~~~~~~~~~i~~~~~ipvi~~Ggi~~~~d~  198 (231)
T cd02801         124 IPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTR-EQRYS----GPADWDYIAEIKEAVSIPVIANGDIFSLEDA  198 (231)
T ss_pred             CCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCH-HHcCC----CCCCHHHHHHHHhCCCCeEEEeCCCCCHHHH
Confidence            356667777663321124779999999999984331111 11111    1235788999999999999999998877778


Q ss_pred             HHHHHc-CCCeeee
Q 037779          108 QILEAI-GVDYVDE  120 (310)
Q Consensus       108 ~~~~~a-Gad~v~~  120 (310)
                      +.+.+. |+|.|..
T Consensus       199 ~~~l~~~gad~V~i  212 (231)
T cd02801         199 LRCLEQTGVDGVMI  212 (231)
T ss_pred             HHHHHhcCCCEEEE
Confidence            777776 8999873

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional

Probab=95.22  E-value=0.27  Score=47.19  Aligned_cols=53  Identities=19%  Similarity=0.340  Sum_probs=43.6

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHHHHHHHHHHcCC
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYS  276 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~  276 (310)
                      .+||  +..|+| +++++.+++. .+.||++||++-++++++.+.++.+.+.+...+
T Consensus       213 ~v~I--LYGGSV-~~~N~~~l~~~~~iDG~LVG~asl~~~~f~~Ii~~~~~~~~~~~  266 (355)
T PRK14905        213 KIPV--LYGGSV-NLENANELIMKPHIDGLFIGRSAWDAQCFHALIADALKALAGSK  266 (355)
T ss_pred             ceeE--EEeCcC-CHHHHHHHhcCCCCCEEEechhhccHHHHHHHHHHHHHhccCCc
Confidence            4678  679999 5888888875 699999999999999888888888877765543

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase

Probab=95.21  E-value=1.1  Score=41.63  Aligned_cols=176  Identities=18%  Similarity=0.163  Sum_probs=92.5

Q ss_pred             CCCHHHHHHHHHc---------CCcEEEecccccchhhhcCCC---CCCCC---hHHHHHHHhhcCcceEee--ccccch
Q 037779           42 VVTPEQARIAEEA---------GACAVMALERVPADIRAQGGV---ARMSD---PQLIKQIKSSVTIPVMAK--ARIGHF  104 (310)
Q Consensus        42 ~~~~~~a~~~~~~---------Ga~~I~~l~~~~~d~r~~~G~---~~~~~---~~~i~~i~~~~~lPv~~k--d~i~~~  104 (310)
                      +-|.--|+.++++         |++++. .-.  ....+..|.   ..+.-   .+.++.|...+++||++.  .. ++.
T Consensus        16 ~~D~~SA~~~e~~~~~~~~~~~Gf~ai~-~ss--~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv~~D~d~G-g~~   91 (285)
T TIGR02320        16 AHNGLSALIAEEARVEVGGESLGFDGIW-SSS--LTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPIILDGDTG-GNF   91 (285)
T ss_pred             CcCHHHHHHHHHhhhcccCcCCCcCEEE-ech--HHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCEEEecCCC-CCH
Confidence            4455668888899         999872 200  001111111   01111   233556677789998874  33 432


Q ss_pred             ----HHHHHHHHcCCCeeeecC-----------------CCChhHHHHHHHh-----cCCCCcEEeecC------CHHHH
Q 037779          105 ----VEAQILEAIGVDYVDESE-----------------VLTPADEENHINK-----HNFRVPFVCGCR------NLGES  152 (310)
Q Consensus       105 ----~~~~~~~~aGad~v~~~~-----------------~~~~~~~~~~~~~-----~~~~l~v~~~v~------t~~ea  152 (310)
                          ..++.+.++|+.++.+-+                 .++.++..+.++.     .+.++.+++.+.      ..+|+
T Consensus        92 ~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eA  171 (285)
T TIGR02320        92 EHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDA  171 (285)
T ss_pred             HHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHH
Confidence                345677889999998522                 2344444444433     123355555421      23333


Q ss_pred             ----HHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHh-cCCCCEEEE
Q 037779          153 ----LRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQ-LGRLPVVHF  227 (310)
Q Consensus       153 ----~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~-~~~iPVv~i  227 (310)
                          +.+.++|||.+.+.+...                        +.+.          -.++.+.++. ..++|++++
T Consensus       172 i~Ra~ay~eAGAD~ifv~~~~~------------------------~~~e----------i~~~~~~~~~~~p~~pl~~~  217 (285)
T TIGR02320       172 LKRAEAYAEAGADGIMIHSRKK------------------------DPDE----------ILEFARRFRNHYPRTPLVIV  217 (285)
T ss_pred             HHHHHHHHHcCCCEEEecCCCC------------------------CHHH----------HHHHHHHhhhhCCCCCEEEe
Confidence                334467888777752100                        0000          1122333321 125688643


Q ss_pred             ccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          228 AAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       228 a~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                       .+ -.-.-.+.++.++|++-|..|..+++
T Consensus       218 -~~-~~~~~~~~eL~~lG~~~v~~~~~~~~  245 (285)
T TIGR02320       218 -PT-SYYTTPTDEFRDAGISVVIYANHLLR  245 (285)
T ss_pred             -cC-CCCCCCHHHHHHcCCCEEEEhHHHHH
Confidence             32 11122578899999999999998876

A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.

>PRK11750 gltB glutamate synthase subunit alpha; Provisional

Probab=95.17  E-value=0.16  Score=56.27  Aligned_cols=118  Identities=20%  Similarity=0.255  Sum_probs=72.0

Q ss_pred             cCCCeee---ecCCCChhHHHHHHHh---cCCCCcEEeecC---CHHHHH-HHHHhCCCEEEEecCC-CCCchH-HHHHH
Q 037779          113 IGVDYVD---ESEVLTPADEENHINK---HNFRVPFVCGCR---NLGESL-RRIREGAAMIRTKGEA-GTGNIV-EAVRH  180 (310)
Q Consensus       113 aGad~v~---~~~~~~~~~~~~~~~~---~~~~l~v~~~v~---t~~ea~-~a~~~Gad~I~v~g~~-~~~~~~-~~~~~  180 (310)
                      -|.+.+.   .++..+++++.+.+..   ..++.++.+.+-   ...++. -..++|||+|.+.|.. +|+--. ...  
T Consensus       964 ~G~~liSP~phhdiySieDL~qlI~~Lk~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~-- 1041 (1485)
T PRK11750        964 PGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSV-- 1041 (1485)
T ss_pred             CCCCCCCCCCCccCCCHHHHHHHHHHHHHhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHH--
Confidence            4777765   3466677777666544   334555555422   222332 3457899999998663 444210 000  


Q ss_pred             HHHhhcceecccccCchhHHhhhccCCCcHHH-H----HHHHhc-C--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEc
Q 037779          181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDL-V----MQTKQL-G--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVG  252 (310)
Q Consensus       181 ~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l-~----~~i~~~-~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VG  252 (310)
                                             ...+.||++ +    +.+.+. .  ++.+  +++||+.|+.|+..++.+|||.|.+|
T Consensus      1042 -----------------------~~~GlP~e~gL~~~~~~L~~~glR~rv~l--~a~Ggl~t~~Dv~kA~aLGAd~~~~g 1096 (1485)
T PRK11750       1042 -----------------------KYAGSPWELGLAETHQALVANGLRHKIRL--QVDGGLKTGLDVIKAAILGAESFGFG 1096 (1485)
T ss_pred             -----------------------hhCCccHHHHHHHHHHHHHhcCCCcceEE--EEcCCcCCHHHHHHHHHcCCcccccc
Confidence                                   012335444 2    223332 2  3555  78999999999999999999999999


Q ss_pred             ccccc
Q 037779          253 SGVFK  257 (310)
Q Consensus       253 sai~~  257 (310)
                      ++.+-
T Consensus      1097 t~~li 1101 (1485)
T PRK11750       1097 TGPMV 1101 (1485)
T ss_pred             hHHHH
Confidence            98764

>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]

Probab=95.00  E-value=0.14  Score=50.62  Aligned_cols=121  Identities=24%  Similarity=0.313  Sum_probs=70.2

Q ss_pred             cCCCeee---ecCCCChhHHHHHHHh-cC--CCCcEEee--c-CCHHHHHH-HHHhCCCEEEEecCC-CCCchHHHHHHH
Q 037779          113 IGVDYVD---ESEVLTPADEENHINK-HN--FRVPFVCG--C-RNLGESLR-RIREGAAMIRTKGEA-GTGNIVEAVRHV  181 (310)
Q Consensus       113 aGad~v~---~~~~~~~~~~~~~~~~-~~--~~l~v~~~--v-~t~~ea~~-a~~~Gad~I~v~g~~-~~~~~~~~~~~~  181 (310)
                      -|.+.+-   .++..+++++..++.. +.  ..-.+.+.  . +....+.. ..+++||+|.+.|.. +||-.+      
T Consensus       271 pG~~~ISP~pHHDiysieDLaqlI~dLk~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP------  344 (485)
T COG0069         271 PGVGLISPPPHHDIYSIEDLAQLIKDLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASP------  344 (485)
T ss_pred             CCCCCcCCCCcccccCHHHHHHHHHHHHhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCc------
Confidence            5777664   3466777777776655 22  22233332  1 22333333 568899999998763 444210      


Q ss_pred             HHhhcceecccccCchhHHhhhccCCCcHHHH-----HHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccc
Q 037779          182 RSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLV-----MQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGV  255 (310)
Q Consensus       182 ~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~-----~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai  255 (310)
                               +..+         ...+.||++.     +.+... .+=-|.++++||+.|+.|+..++.+|||.|-+|++.
T Consensus       345 ---------~~~~---------~~~GiP~e~glae~~q~L~~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~  406 (485)
T COG0069         345 ---------LTSI---------DHAGIPWELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTAA  406 (485)
T ss_pred             ---------HhHh---------hcCCchHHHHHHHHHHHHHHcCCcceeEEEecCCccCHHHHHHHHHhCcchhhhchHH
Confidence                     0000         0123344432     122222 122233378999999999999999999999999976


Q ss_pred             cc
Q 037779          256 FK  257 (310)
Q Consensus       256 ~~  257 (310)
                      +-
T Consensus       407 li  408 (485)
T COG0069         407 LV  408 (485)
T ss_pred             HH
Confidence            54

>PRK08508 biotin synthase; Provisional

Probab=94.98  E-value=1.9  Score=39.88  Aligned_cols=209  Identities=11%  Similarity=0.172  Sum_probs=97.6

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeeecCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDESEVL  124 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~~  124 (310)
                      +.|+.+.+.|+..+...    +..+.+.......-.+.++.+++.. ++.+.......+.+.++.+.++|+|.+... ..
T Consensus        47 ~~a~~a~~~g~~~~~lv----~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~~~-lE  121 (279)
T PRK08508         47 QEAKMAKANGALGFCLV----TSGRGLDDKKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYNHN-LE  121 (279)
T ss_pred             HHHHHHHHCCCCEEEEE----eccCCCCcccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEccc-cc
Confidence            44666666799887432    1111000000000034455666553 555544444445678899999999998632 11


Q ss_pred             ChhHHHHHHHhcCCCCcEEeecCCHHHHHH----HHHhCCCEEE--EecCCCCC-chHHHHHHHHHhhcceecccccCch
Q 037779          125 TPADEENHINKHNFRVPFVCGCRNLGESLR----RIREGAAMIR--TKGEAGTG-NIVEAVRHVRSVMGDIRVLRNMDDD  197 (310)
Q Consensus       125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~----a~~~Gad~I~--v~g~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d  197 (310)
                      +.++   .+.    .+   ...++.++..+    +.+.|.....  +.|...+. ...+.+.+++++..+..-+..+.+.
T Consensus       122 t~~~---~~~----~i---~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ed~~~~l~~lr~L~~~svpl~~~~p~  191 (279)
T PRK08508        122 TSKE---FFP----KI---CTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRISFLKSLASLSPHSTPINFFIPN  191 (279)
T ss_pred             chHH---Hhc----CC---CCCCCHHHHHHHHHHHHHcCCeecceeEEecCCCHHHHHHHHHHHHcCCCCEEeeCCcCCC
Confidence            1111   111    11   23455665433    3455653321  12322111 2345556666666663333322211


Q ss_pred             hHHhhhccCCCcHHHHHHHHhc----CCCCEEEEccCCC-CCHH-HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 037779          198 EVFTFAKNIAAPYDLVMQTKQL----GRLPVVHFAAGGV-ATPA-DAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQA  271 (310)
Q Consensus       198 ~~~~~~~~~~~~~~l~~~i~~~----~~iPVv~ia~GGI-~t~~-di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~  271 (310)
                      +-.........+.+.++.+.-.    .+.-|-  .+||- .... .-..++.+||+++++|..++....+.+.-.++++.
T Consensus       192 ~~t~~~~~~~~~~~~lr~iAv~Rl~lp~~~i~--~~~gr~~~~~~~~~~~~~~g~n~~~~g~~lt~~g~~~~~d~~~~~~  269 (279)
T PRK08508        192 PALPLKAPTLSADEALEIVRLAKEALPNARLM--VAGGREVVFGERQYEIFEAGANAIVIGDYLTTKGEAPKKDIEKLKS  269 (279)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCceee--ecCChhhhchhhHHHHHhcCCcceeecCcccCCCCChHHHHHHHHH
Confidence            1000000012234444443211    122221  25664 2222 33456689999999999999887666555555443

>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase

Probab=94.95  E-value=0.17  Score=44.72  Aligned_cols=66  Identities=23%  Similarity=0.189  Sum_probs=52.3

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      .++.+.+..|++++ .|       ....|.....+++.++++++.+++|+++...+.+.++++.+.++|||.|.
T Consensus       138 ~~a~aa~~~G~~~i-~L-------e~~sGa~~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e~a~~l~~~GAD~VV  203 (205)
T TIGR01769       138 AYCLAAKYFGMKWV-YL-------EAGSGASYPVNPETISLVKKASGIPLIVGGGIRSPEIAYEIVLAGADAIV  203 (205)
T ss_pred             HHHHHHHHcCCCEE-EE-------EcCCCCCCCCCHHHHHHHHHhhCCCEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence            45777777899988 34       12334444566999999999999999999999888889888899999985

This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.

>cd02812 PcrB_like PcrB_like proteins

Probab=94.93  E-value=0.4  Score=42.87  Aligned_cols=66  Identities=21%  Similarity=0.312  Sum_probs=50.2

Q ss_pred             HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeee-ecCC
Q 037779           47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVD-ESEV  123 (310)
Q Consensus        47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~  123 (310)
                      +|...+..|.. +.+|     |   ++|.  ..+++.++++++.+ ++|+++..++.+.++++.+.++|||.|. .+..
T Consensus       140 yA~aae~~g~~-ivyL-----e---~SG~--~~~~e~I~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai  207 (219)
T cd02812         140 YALAAEYLGMP-IVYL-----E---YSGA--YGPPEVVRAVKKVLGDTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIV  207 (219)
T ss_pred             HHHHHHHcCCe-EEEe-----C---CCCC--cCCHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECchh
Confidence            45666666733 4365     2   3344  36799999999998 9999999999888899999999999988 4433

One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.

>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised

Probab=94.92  E-value=2.7  Score=37.81  Aligned_cols=185  Identities=21%  Similarity=0.188  Sum_probs=102.9

Q ss_pred             ccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC--cceEee--ccccchHH----HHHHH
Q 037779           40 MDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT--IPVMAK--ARIGHFVE----AQILE  111 (310)
Q Consensus        40 ~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~--lPv~~k--d~i~~~~~----~~~~~  111 (310)
                      .++.+.+.|+.+.++|++.| ++    +++..  |+.=-..+..+++|++.+.  .|++.-  |.-.....    +....
T Consensus         5 vSv~~~~EA~~a~~~gaDiI-D~----K~P~~--GaLGA~~~~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a   77 (235)
T PF04476_consen    5 VSVRNVEEAEEALAGGADII-DL----KNPAE--GALGALFPWVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAA   77 (235)
T ss_pred             ecCCCHHHHHHHHhCCCCEE-Ec----cCCCC--CCCCCCCHHHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHH
Confidence            35567899999999999988 88    55543  3322235888999988774  788774  32211111    22233


Q ss_pred             HcCCCeeeec--CCCChhHHHHHH-------HhcCCCCcEEe-ecC--------CHHHH-HHHHHhCCCEEEEecCCCCC
Q 037779          112 AIGVDYVDES--EVLTPADEENHI-------NKHNFRVPFVC-GCR--------NLGES-LRRIREGAAMIRTKGEAGTG  172 (310)
Q Consensus       112 ~aGad~v~~~--~~~~~~~~~~~~-------~~~~~~l~v~~-~v~--------t~~ea-~~a~~~Gad~I~v~g~~~~~  172 (310)
                      ..|+|+|-+-  ...+..+..+.+       +....+..+++ ...        ++.++ ..+.+.|++.+++-....++
T Consensus        78 ~~GvdyvKvGl~g~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg  157 (235)
T PF04476_consen   78 ATGVDYVKVGLFGCKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAAEAGFDGVMLDTADKDG  157 (235)
T ss_pred             hcCCCEEEEecCCCCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHHHcCCCEEEEecccCCC
Confidence            4799998622  112333333222       22222222222 211        22233 34567898888876332222


Q ss_pred             chHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEc
Q 037779          173 NIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG  252 (310)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VG  252 (310)
                      .               +.+..++.+.          -.+++...++. .+-+  -.+|-+ ..+|+..+...++|-+.+=
T Consensus       158 ~---------------~L~d~~~~~~----------L~~Fv~~ar~~-gL~~--aLAGSL-~~~di~~L~~l~pD~lGfR  208 (235)
T PF04476_consen  158 G---------------SLFDHLSEEE----------LAEFVAQARAH-GLMC--ALAGSL-RFEDIPRLKRLGPDILGFR  208 (235)
T ss_pred             C---------------chhhcCCHHH----------HHHHHHHHHHc-cchh--hccccC-ChhHHHHHHhcCCCEEEec
Confidence            1               0111111111          12233333332 2333  337888 5999999999999999999


Q ss_pred             cccccCCC
Q 037779          253 SGVFKSGD  260 (310)
Q Consensus       253 sai~~~~d  260 (310)
                      ++++...|
T Consensus       209 GAvC~ggd  216 (235)
T PF04476_consen  209 GAVCGGGD  216 (235)
T ss_pred             hhhCCCCC
Confidence            99998753

>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway

Probab=94.88  E-value=1.2  Score=40.68  Aligned_cols=90  Identities=14%  Similarity=0.116  Sum_probs=47.7

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhh--hcCCC--CCCCC----hHHHHHHHhhcCcceEeeccc-c---c-h---
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIR--AQGGV--ARMSD----PQLIKQIKSSVTIPVMAKARI-G---H-F---  104 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r--~~~G~--~~~~~----~~~i~~i~~~~~lPv~~kd~i-~---~-~---  104 (310)
                      .+-|.-.|+.++++|++++..-     |--  ...|.  ...-.    ...++.|++.++.|+++-|.- +   + .   
T Consensus        18 ~ayD~~sA~l~e~aG~d~i~vG-----ds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~a   92 (254)
T cd06557          18 TAYDYPTAKLADEAGVDVILVG-----DSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQA   92 (254)
T ss_pred             eCCCHHHHHHHHHcCCCEEEEC-----HHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHH
Confidence            4567788999999999998422     110  00111  11111    223456677788995554432 3   1 1   


Q ss_pred             -HHH-HHHHHcCCCeeeecCCCChhHHHHHHHh
Q 037779          105 -VEA-QILEAIGVDYVDESEVLTPADEENHINK  135 (310)
Q Consensus       105 -~~~-~~~~~aGad~v~~~~~~~~~~~~~~~~~  135 (310)
                       ..+ +.+.++||+.|.+-+.....+.++.+..
T Consensus        93 v~~a~r~~~~aGa~aVkiEd~~~~~~~I~al~~  125 (254)
T cd06557          93 LRNAARLMKEAGADAVKLEGGAEVAETIRALVD  125 (254)
T ss_pred             HHHHHHHHHHhCCeEEEEcCcHHHHHHHHHHHH
Confidence             222 3445599999985443223344444443

Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.

>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]

Probab=94.87  E-value=0.21  Score=44.67  Aligned_cols=79  Identities=30%  Similarity=0.422  Sum_probs=60.8

Q ss_pred             ecCCccc--cCC-CHHHHHHHHHcCCcEEEecccccchhhhcCCC-CCCCChHHHHHHHhhcCcceEeeccccchHHHHH
Q 037779           34 LRGGVIM--DVV-TPEQARIAEEAGACAVMALERVPADIRAQGGV-ARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQI  109 (310)
Q Consensus        34 l~~g~i~--~~~-~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~-~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~  109 (310)
                      .+.|+..  ++. |+-.++++++.|+.+++-+.      ... |+ .=+.|+..++-|++..++||++.-.+|...++-.
T Consensus       127 v~eGF~VlPY~~dD~v~arrLee~GcaavMPl~------aPI-GSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa~  199 (262)
T COG2022         127 VKEGFVVLPYTTDDPVLARRLEEAGCAAVMPLG------API-GSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAAQ  199 (262)
T ss_pred             HhCCCEEeeccCCCHHHHHHHHhcCceEecccc------ccc-cCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHHH
Confidence            3556643  343 48899999999999987551      011 22 1256789999999999999999999998778888


Q ss_pred             HHHcCCCeee
Q 037779          110 LEAIGVDYVD  119 (310)
Q Consensus       110 ~~~aGad~v~  119 (310)
                      ..+.|+|.|+
T Consensus       200 aMElG~DaVL  209 (262)
T COG2022         200 AMELGADAVL  209 (262)
T ss_pred             HHhcccceee
Confidence            8899999998

>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD

Probab=94.83  E-value=0.24  Score=45.62  Aligned_cols=34  Identities=24%  Similarity=0.255  Sum_probs=30.4

Q ss_pred             EEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          224 VVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       224 Vv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      +.++++|||+ ++++..+.+.|.|.+.+|+.++..
T Consensus       240 ~~i~~Sggi~-~~~i~~~~~~gvd~~gvG~~~~~~  273 (281)
T cd00516         240 VKIEASGGLD-EENIRAYAETGVDVFGVGTLLHSA  273 (281)
T ss_pred             eEEEEeCCCC-HHHHHHHHHcCCCEEEeCcccccC
Confidence            4447899995 999999999999999999999885

QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.

>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed

Probab=94.79  E-value=2.6  Score=40.15  Aligned_cols=177  Identities=18%  Similarity=0.184  Sum_probs=102.8

Q ss_pred             HHHHHHHHcCCcEEEec-ccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-CC
Q 037779           46 EQARIAEEAGACAVMAL-ERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-EV  123 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l-~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~~  123 (310)
                      ++|+.+.++|++.+-.. .--.|.+..|.|.. ...+..+++.++.+++|++.-.+  +...++.+.+. +|.+-+. ..
T Consensus       111 ~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~g-~~gL~~L~~~~~~~Gl~v~tev~--d~~~~~~l~~~-vd~lqIgAr~  186 (335)
T PRK08673        111 EIARAVKEAGAQILRGGAFKPRTSPYSFQGLG-EEGLKLLAEAREETGLPIVTEVM--DPRDVELVAEY-VDILQIGARN  186 (335)
T ss_pred             HHHHHHHHhchhhccCcEecCCCCCccccccc-HHHHHHHHHHHHHcCCcEEEeeC--CHHHHHHHHHh-CCeEEECccc
Confidence            67999999999854111 01112222333321 23355677888889999976533  33566667677 8877643 44


Q ss_pred             CChhHHHHHHHhcCCCCcEEeec--C-CHHHHHHHHH----hCCC-EEEEe-cC-CCCCchHHHHHHHHHhhcceecccc
Q 037779          124 LTPADEENHINKHNFRVPFVCGC--R-NLGESLRRIR----EGAA-MIRTK-GE-AGTGNIVEAVRHVRSVMGDIRVLRN  193 (310)
Q Consensus       124 ~~~~~~~~~~~~~~~~l~v~~~v--~-t~~ea~~a~~----~Gad-~I~v~-g~-~~~~~~~~~~~~~~~~~~~~~~l~~  193 (310)
                      .....+++.+.+  .+.++++..  . |.+|...+.+    .|.. ++-.+ |. .|.+                    +
T Consensus       187 ~~N~~LL~~va~--~~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~--------------------~  244 (335)
T PRK08673        187 MQNFDLLKEVGK--TNKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFET--------------------A  244 (335)
T ss_pred             ccCHHHHHHHHc--CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCC--------------------c
Confidence            455666666654  457777753  3 7787766553    4553 44333 22 1211                    0


Q ss_pred             cCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCC----HHHHHHHHHcCCCEEEEccccccC
Q 037779          194 MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVAT----PADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       194 ~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t----~~di~~~~~~GadgV~VGsai~~~  258 (310)
                       .+         ...+...+..+++..+.||+..++=+.+.    +.-...+..+||||+++=.-+.-.
T Consensus       245 -~~---------~~ldl~ai~~lk~~~~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~pd  303 (335)
T PRK08673        245 -TR---------NTLDLSAVPVIKKLTHLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPDPE  303 (335)
T ss_pred             -Ch---------hhhhHHHHHHHHHhcCCCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEecCCcc
Confidence             01         12245566677776678996544444333    244567778999999998866553

>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []

Probab=94.78  E-value=0.04  Score=52.50  Aligned_cols=55  Identities=31%  Similarity=0.491  Sum_probs=44.7

Q ss_pred             HHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHH
Q 037779          210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       210 ~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~  266 (310)
                      ..+...+++..++||  |+.|||.+++.+.++++.| +|.|.+|++++..+|....++
T Consensus       280 ~~~a~~ik~~~~~pv--i~~G~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd~~~k~~  335 (341)
T PF00724_consen  280 LDLAEAIKKAVKIPV--IGVGGIRTPEQAEKALEEGKADLVAMGRPLLADPDLPNKAR  335 (341)
T ss_dssp             HHHHHHHHHHHSSEE--EEESSTTHHHHHHHHHHTTSTSEEEESHHHHH-TTHHHHHH
T ss_pred             hhhhhhhhhhcCceE--EEEeeecchhhhHHHHhcCCceEeeccHHHHhCchHHHHHH
Confidence            356677777778899  5679999999899999875 999999999999888776554

It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....

>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA

Probab=94.60  E-value=0.056  Score=50.77  Aligned_cols=88  Identities=31%  Similarity=0.294  Sum_probs=57.3

Q ss_pred             ccceeeecCCccccCC-CHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHH
Q 037779           28 VGLAQMLRGGVIMDVV-TPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVE  106 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~~-~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~  106 (310)
                      .|+..++|.|+-.+.. ..++++.++++|+++|.+.-+.+.+ + +.|   ..+.+.++++++.+++||+.+..+.+.++
T Consensus       123 ~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q-~-~~~---~a~w~~i~~i~~~~~ipvi~NGdI~s~~d  197 (309)
T PF01207_consen  123 IPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRKQ-R-YKG---PADWEAIAEIKEALPIPVIANGDIFSPED  197 (309)
T ss_dssp             SEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TTC-C-CTS------HHHHHHCHHC-TSEEEEESS--SHHH
T ss_pred             cceEEecccccccchhHHHHHHHHhhhcccceEEEecCchhh-c-CCc---ccchHHHHHHhhcccceeEEcCccCCHHH
Confidence            5788999998863332 2588999999999998443243322 1 222   45688999999999999999998887777


Q ss_pred             HHHHHH-cCCCeeee
Q 037779          107 AQILEA-IGVDYVDE  120 (310)
Q Consensus       107 ~~~~~~-aGad~v~~  120 (310)
                      ++.+.+ .|+|+|-+
T Consensus       198 ~~~~~~~tg~dgvMi  212 (309)
T PF01207_consen  198 AERMLEQTGADGVMI  212 (309)
T ss_dssp             HHHHCCCH-SSEEEE
T ss_pred             HHHHHHhcCCcEEEE
Confidence            776666 59999874

Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.

>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]

Probab=94.54  E-value=0.83  Score=45.69  Aligned_cols=88  Identities=24%  Similarity=0.382  Sum_probs=53.8

Q ss_pred             HHHHHHhcCCCCEEEEccCCCCCHHHHHHHH------HcC-----CCEEEEccccccCCCHH--HHHHHHHHH-------
Q 037779          212 LVMQTKQLGRLPVVHFAAGGVATPADAAMMM------QLG-----CDGVFVGSGVFKSGDPV--RRARAIVQA-------  271 (310)
Q Consensus       212 l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~------~~G-----adgV~VGsai~~~~dp~--~~~~~~~~~-------  271 (310)
                      .+..++...+  |++++.|||+++++....+      ++|     +||+++||+.|.+..-.  ..+|+.+-.       
T Consensus       204 tYs~lR~~~N--Ivl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMatKEatTSp~vK~~lv~t~Gvdd~  281 (717)
T COG4981         204 TYSELRSRDN--IVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMATKEATTSPAVKEALVATQGVDDD  281 (717)
T ss_pred             HHHHHhcCCC--EEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhhhhccCCHHHHHHHhhCCCCCch
Confidence            3444554443  4447899999999987654      223     89999999999865321  123333222       


Q ss_pred             --HHcCCChhhHHhhhhccCCceeccccccch
Q 037779          272 --VTNYSDPDVLAEVSCGLGEAMVGIDLNDVK  301 (310)
Q Consensus       272 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (310)
                        +..|+.|-+....--++|++|--|+-..++
T Consensus       282 ~W~~~g~a~~Gm~s~rSqLgadIheidn~~~~  313 (717)
T COG4981         282 EWEGTGKAPGGMASVRSQLGADIHEIDNRGAM  313 (717)
T ss_pred             hceecCCCCCceeeehhhhCCcHHhhhhHHHH
Confidence              122445666666667778887766644433

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=94.53  E-value=0.3  Score=43.32  Aligned_cols=90  Identities=20%  Similarity=0.181  Sum_probs=60.0

Q ss_pred             ccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee
Q 037779           40 MDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        40 ~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      .++.+.+.++.+.+.|++.+..-+..-+....   .......+.++++++.+++|+++..++.+.+.+..+.++|||.|.
T Consensus       124 ~~v~t~ee~~~a~~~G~d~i~~~~~g~t~~~~---~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~~~~~~l~~GadgV~  200 (221)
T PRK01130        124 ADCSTLEEGLAAQKLGFDFIGTTLSGYTEETK---KPEEPDFALLKELLKAVGCPVIAEGRINTPEQAKKALELGAHAVV  200 (221)
T ss_pred             EeCCCHHHHHHHHHcCCCEEEcCCceeecCCC---CCCCcCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHCCCCEEE
Confidence            34566788899999999987321100000000   111234788999999999999999888777788888899999998


Q ss_pred             -ecCCCChhHHHHH
Q 037779          120 -ESEVLTPADEENH  132 (310)
Q Consensus       120 -~~~~~~~~~~~~~  132 (310)
                       .+....+.+..+.
T Consensus       201 iGsai~~~~~~~~~  214 (221)
T PRK01130        201 VGGAITRPEEITKW  214 (221)
T ss_pred             EchHhcCCHHHHHH
Confidence             4444444444443

>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=94.50  E-value=3.7  Score=37.44  Aligned_cols=175  Identities=11%  Similarity=0.084  Sum_probs=98.4

Q ss_pred             HHHHHHHHcCCcEEEecc-cccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-CC
Q 037779           46 EQARIAEEAGACAVMALE-RVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-EV  123 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~~  123 (310)
                      +.|+...+.|+..+---- ...|.+..|.|-.. .-+..+.++++..++|++--.+  +...++.+.+ .+|.+-+. ..
T Consensus        33 ~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~-~gl~~L~~~~~~~Gl~~~Tev~--d~~~v~~~~e-~vdilqIgs~~  108 (250)
T PRK13397         33 LAASSAKKLGYNYFRGGAYKPRTSAASFQGLGL-QGIRYLHEVCQEFGLLSVSEIM--SERQLEEAYD-YLDVIQVGARN  108 (250)
T ss_pred             HHHHHHHHcCCCEEEecccCCCCCCcccCCCCH-HHHHHHHHHHHHcCCCEEEeeC--CHHHHHHHHh-cCCEEEECccc
Confidence            679999999998761110 11233444544321 2466677888889999976433  3356666666 58888744 33


Q ss_pred             CChhHHHHHHHhcCCCCcEEeec---CCHHHHHHHHH----hCC-CEEEEe-cCCCCCchHHHHHHHHHhhcceeccccc
Q 037779          124 LTPADEENHINKHNFRVPFVCGC---RNLGESLRRIR----EGA-AMIRTK-GEAGTGNIVEAVRHVRSVMGDIRVLRNM  194 (310)
Q Consensus       124 ~~~~~~~~~~~~~~~~l~v~~~v---~t~~ea~~a~~----~Ga-d~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~  194 (310)
                      ....++.+.+.+  .+.++++..   .|++|.+.+++    .|. +++-.+ |. .+                   +++.
T Consensus       109 ~~n~~LL~~va~--tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~-~~-------------------Y~~~  166 (250)
T PRK13397        109 MQNFEFLKTLSH--IDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGV-RG-------------------YDVE  166 (250)
T ss_pred             ccCHHHHHHHHc--cCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEcccc-CC-------------------CCCc
Confidence            445566666654  457777753   47777665553    466 455444 22 11                   1111


Q ss_pred             CchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEcc--CCCCC--HHHHHHHHHcCCCEEEEcccc
Q 037779          195 DDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAA--GGVAT--PADAAMMMQLGCDGVFVGSGV  255 (310)
Q Consensus       195 ~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~--GGI~t--~~di~~~~~~GadgV~VGsai  255 (310)
                      .         ....+..-+..+++..++||++-.+  +|...  +.-...++.+||||+++=+-+
T Consensus       167 ~---------~n~~dl~ai~~lk~~~~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~  222 (250)
T PRK13397        167 T---------RNMLDIMAVPIIQQKTDLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHP  222 (250)
T ss_pred             c---------ccccCHHHHHHHHHHhCCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEecC
Confidence            0         0112344455666655789853111  33211  133566678999999987643

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=94.48  E-value=0.18  Score=47.44  Aligned_cols=74  Identities=30%  Similarity=0.316  Sum_probs=55.8

Q ss_pred             ccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCC-CCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779           40 MDVVTPEQARIAEEAGACAVMALERVPADIRAQGGV-ARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYV  118 (310)
Q Consensus        40 ~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~-~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v  118 (310)
                      ..+.+.+.++.++++|+|+|..-      .+.-+|. ...++..+++++++.+++||+....+.+...+..+.+.||+.|
T Consensus       114 ~~v~s~~~a~~a~~~GaD~Ivv~------g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~~al~~GA~gV  187 (307)
T TIGR03151       114 PVVASVALAKRMEKAGADAVIAE------GMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMAAAFALGAEAV  187 (307)
T ss_pred             EEcCCHHHHHHHHHcCCCEEEEE------CcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCCEe
Confidence            34566899999999999998421      1122222 1234588999999999999999999987677777778999999


Q ss_pred             e
Q 037779          119 D  119 (310)
Q Consensus       119 ~  119 (310)
                      .
T Consensus       188 ~  188 (307)
T TIGR03151       188 Q  188 (307)
T ss_pred             e
Confidence            7

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

Probab=94.32  E-value=0.3  Score=43.30  Aligned_cols=60  Identities=13%  Similarity=0.134  Sum_probs=50.3

Q ss_pred             HHHHHHHhcCCCCcEEeecCCHH----HHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcc
Q 037779          128 DEENHINKHNFRVPFVCGCRNLG----ESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGD  187 (310)
Q Consensus       128 ~~~~~~~~~~~~l~v~~~v~t~~----ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~  187 (310)
                      +.++.+++..++..++++.+|.+    |++.+.+.|||++.+.|.+...++..+++.+++++..
T Consensus        45 ~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~tV~g~A~~~TI~~~i~~A~~~~~~  108 (217)
T COG0269          45 RAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWVTVLGAADDATIKKAIKVAKEYGKE  108 (217)
T ss_pred             HHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEEEEEecCCHHHHHHHHHHHHHcCCe
Confidence            45566777778899999999877    8889999999999999887777788888888888766

>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=94.29  E-value=4.7  Score=37.72  Aligned_cols=66  Identities=18%  Similarity=0.262  Sum_probs=41.1

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCC-CCCC---hHHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVA-RMSD---PQLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGV  115 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~-~~~~---~~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGa  115 (310)
                      +.++.+.+.|+++|...-        ..|.. .+..   .+.++.+++.+  .+||++...-..    .+.++.+.+.|+
T Consensus        29 ~lv~~li~~Gv~gi~~~G--------ttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~Ga  100 (299)
T COG0329          29 RLVEFLIAAGVDGLVVLG--------TTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLGA  100 (299)
T ss_pred             HHHHHHHHcCCCEEEECC--------CCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcCC
Confidence            679999999999984431        11111 1111   22345555555  489988754432    245677788999


Q ss_pred             Ceee
Q 037779          116 DYVD  119 (310)
Q Consensus       116 d~v~  119 (310)
                      |+++
T Consensus       101 d~il  104 (299)
T COG0329         101 DGIL  104 (299)
T ss_pred             CEEE
Confidence            9998

>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed

Probab=94.29  E-value=3.2  Score=38.14  Aligned_cols=90  Identities=13%  Similarity=0.118  Sum_probs=46.8

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhh--hcCCC--CCCCCh----HHHHHHHhhcCcceEeecc-ccch----HH-
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIR--AQGGV--ARMSDP----QLIKQIKSSVTIPVMAKAR-IGHF----VE-  106 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r--~~~G~--~~~~~~----~~i~~i~~~~~lPv~~kd~-i~~~----~~-  106 (310)
                      .+-|.-.|+.++++|++++..-     |--  ...|.  ...-.+    ..++.|++.++.|+++-|. ++.+    +. 
T Consensus        21 tayD~~sArl~e~aG~d~i~vG-----ds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~a   95 (264)
T PRK00311         21 TAYDYPFAKLFDEAGVDVILVG-----DSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQA   95 (264)
T ss_pred             eCCCHHHHHHHHHcCCCEEEEC-----HHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHH
Confidence            4567788999999999998422     110  00111  111112    2345667777777444443 2322    22 


Q ss_pred             ---H-HHHHHcCCCeeeecCCCChhHHHHHHHh
Q 037779          107 ---A-QILEAIGVDYVDESEVLTPADEENHINK  135 (310)
Q Consensus       107 ---~-~~~~~aGad~v~~~~~~~~~~~~~~~~~  135 (310)
                         + +.+.++||+.|.+-+.....+.++.+..
T Consensus        96 v~~a~r~~~~aGa~aVkiEdg~~~~~~I~al~~  128 (264)
T PRK00311         96 LRNAGRLMKEAGAHAVKLEGGEEVAETIKRLVE  128 (264)
T ss_pred             HHHHHHHHHHhCCeEEEEcCcHHHHHHHHHHHH
Confidence               2 3444599999985443223344444443

>TIGR02134 transald_staph transaldolase

Probab=94.26  E-value=4  Score=36.88  Aligned_cols=173  Identities=10%  Similarity=0.120  Sum_probs=98.4

Q ss_pred             cCCCHHHHHHHHHcC-CcEEEecccccchhhhcCCCCCCCChHHHHHHHhh-cCcceEeeccccc----hHHHHHHHHcC
Q 037779           41 DVVTPEQARIAEEAG-ACAVMALERVPADIRAQGGVARMSDPQLIKQIKSS-VTIPVMAKARIGH----FVEAQILEAIG  114 (310)
Q Consensus        41 ~~~~~~~a~~~~~~G-a~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~-~~lPv~~kd~i~~----~~~~~~~~~aG  114 (310)
                      +..+.+..+.+.+.| .+++. =  .|+-.+ +.|.  ..-.+.+++++.. .+-||.+...-.+    .+++..+.+.|
T Consensus        11 DtAd~~ei~~~~~~g~i~GvT-T--NPsll~-k~g~--~~~~~~~~~i~~~~~~~~vs~EV~~~d~~~m~~eA~~l~~~~   84 (236)
T TIGR02134        11 DGANLEEMVKFSTHPYVKGFT-T--NPSLMR-KAGI--VDYEAFAHEALAQITDLPISFEVFADDLDEMEKEARYIASWG   84 (236)
T ss_pred             eCCCHHHHHHHHhCCCeeEEe-C--CHHHHH-hcCC--CCHHHHHHHHHHHccCCcEEEEEecCCHHHHHHHHHHHHhcC
Confidence            456678888888877 46762 2  223222 2231  1124566676443 3457766543332    24566667777


Q ss_pred             CCeee-ecCCCC----hhHHHHHHHhcCCCCcEEee-cCCHHHHHHH---HHhC-CCEEEEe-cCCCCCchHHHHHHHHH
Q 037779          115 VDYVD-ESEVLT----PADEENHINKHNFRVPFVCG-CRNLGESLRR---IREG-AAMIRTK-GEAGTGNIVEAVRHVRS  183 (310)
Q Consensus       115 ad~v~-~~~~~~----~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a---~~~G-ad~I~v~-g~~~~~~~~~~~~~~~~  183 (310)
                      -+.++ ++....    --..++.+.+++  +.+-+. +.|+.++..+   +..| ++|+.+. |+...            
T Consensus        85 ~nv~VKIP~T~~~G~~~l~ai~~L~~~G--I~vn~T~vfs~~Qa~~aa~A~~aG~a~yispfvgR~dd------------  150 (236)
T TIGR02134        85 NNVNVKIPVTNTKGESTGPLIQKLSADG--ITLNVTALTTIEQVEKVCQSFTDGVPGIVSVFAGRIAD------------  150 (236)
T ss_pred             CCeEEEECCcCcccchHHHHHHHHHHCC--CcEEeehcCCHHHHHHHHHHHhCCCCeEEEEecchhhh------------
Confidence            66555 553321    134455565544  444443 6788888764   4589 6999876 44210            


Q ss_pred             hhcceecccccCchhHHhhhccCCCcHHHHHHHHh----cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          184 VMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQ----LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       184 ~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~----~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                                ...|           +..++..+.+    ..+..|+   ..-+.++.++.++..+|||.+-+.-.+++
T Consensus       151 ----------~g~D-----------~~~~i~~i~~i~~~~~~tkIL---aAS~R~~~~v~~a~~~Gad~vTvp~~v~~  204 (236)
T TIGR02134       151 ----------TGVD-----------PEPHMREALEIVAQKPGVELL---WASPRELFNIIQADRIGCDIITCAHDILA  204 (236)
T ss_pred             ----------cCCC-----------cHHHHHHHHHHHHhCCCcEEE---EEccCCHHHHHHHHHcCCCEEECCHHHHH
Confidence                      0111           2233333322    2234453   46788999999999999999999876665

This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.

>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase

Probab=94.23  E-value=3  Score=38.90  Aligned_cols=88  Identities=25%  Similarity=0.364  Sum_probs=50.0

Q ss_pred             ceeeecCCccc---cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCC---CCCC---ChHHHHHHHhhcCcceEee--
Q 037779           30 LAQMLRGGVIM---DVVTPEQARIAEEAGACAVMALERVPADIRAQGGV---ARMS---DPQLIKQIKSSVTIPVMAK--   98 (310)
Q Consensus        30 ~~~~l~~g~i~---~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~---~~~~---~~~~i~~i~~~~~lPv~~k--   98 (310)
                      +.++|..+.+.   .+.|+=-|+.++++|++++..--   -...+..|-   ..+.   ..+.+++|.+.+++||++-  
T Consensus         7 lr~~l~~~~~~~~pg~~D~lSAri~e~aGf~ai~~ss---~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d   83 (290)
T TIGR02321         7 LRAALDSGRLFTAMAAHNPLVAKLAEQAGFGGIWGSG---FELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADID   83 (290)
T ss_pred             HHHHHhCCCCEEeccccCHHHHHHHHHcCCCEEEECH---HHHHHHCCCCCcccCCHHHHHHHHHHHHhccCCCEEEECC
Confidence            44555554443   23455668999999999982110   001110111   0111   1334567778889999985  


Q ss_pred             ccccc----hHHHHHHHHcCCCeeee
Q 037779           99 ARIGH----FVEAQILEAIGVDYVDE  120 (310)
Q Consensus        99 d~i~~----~~~~~~~~~aGad~v~~  120 (310)
                      +..+.    ...++.+.++|+.++++
T Consensus        84 ~GyG~~~~v~~tV~~~~~aGvagi~I  109 (290)
T TIGR02321        84 TGFGNAVNVHYVVPQYEAAGASAIVM  109 (290)
T ss_pred             CCCCCcHHHHHHHHHHHHcCCeEEEE
Confidence            23332    23467888899999884

This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.

>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]

Probab=94.21  E-value=1.8  Score=41.03  Aligned_cols=69  Identities=28%  Similarity=0.216  Sum_probs=46.0

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      +.|+++.+.||..+..+    +-.+. .|.....-.+.++.|++.+++++.+..+.-+.++++.+.++|+|+..
T Consensus        91 e~Ak~ak~~Ga~r~c~~----aagr~-~~~~~~~i~~~v~~Vk~~~~le~c~slG~l~~eq~~~L~~aGvd~yn  159 (335)
T COG0502          91 EAAKKAKAAGATRFCMG----AAGRG-PGRDMEEVVEAIKAVKEELGLEVCASLGMLTEEQAEKLADAGVDRYN  159 (335)
T ss_pred             HHHHHHHHcCCceEEEE----EeccC-CCccHHHHHHHHHHHHHhcCcHHhhccCCCCHHHHHHHHHcChhhee
Confidence            67999999998765333    11111 11100111345667777788999888776677889999999999985

>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases

Probab=94.19  E-value=4.7  Score=37.36  Aligned_cols=83  Identities=20%  Similarity=0.236  Sum_probs=46.7

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccc---hHHHHHHHHcCCCe
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGH---FVEAQILEAIGVDY  117 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~---~~~~~~~~~aGad~  117 (310)
                      +.++.+.+.|++++..+.       ..+-...+...   +.++.+.+.+  ++||++....+.   .+.++.+.++|+|+
T Consensus        25 ~l~~~l~~~Gv~gi~v~G-------stGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~~a~~~Gad~   97 (289)
T cd00951          25 AHVEWLLSYGAAALFAAG-------GTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAAEKAGADG   97 (289)
T ss_pred             HHHHHHHHcCCCEEEECc-------CCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHHHHHHhCCCE
Confidence            679999999999984431       01101112222   2344444444  589998754332   24567778899999


Q ss_pred             eee-cCC---CChhHHHHHHHh
Q 037779          118 VDE-SEV---LTPADEENHINK  135 (310)
Q Consensus       118 v~~-~~~---~~~~~~~~~~~~  135 (310)
                      +.. +..   .+.+.+.+.++.
T Consensus        98 v~~~pP~y~~~~~~~i~~~f~~  119 (289)
T cd00951          98 ILLLPPYLTEAPQEGLYAHVEA  119 (289)
T ss_pred             EEECCCCCCCCCHHHHHHHHHH
Confidence            873 221   233455555543

The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.

>PRK02227 hypothetical protein; Provisional

Probab=94.17  E-value=4.2  Score=36.74  Aligned_cols=144  Identities=21%  Similarity=0.173  Sum_probs=75.7

Q ss_pred             chHHHHHHHHcCCCeeee--c----CCCChhHHHHHHHh-cCCCCcEEeecCC----HHH----HHHHHHhCCCEEEEec
Q 037779          103 HFVEAQILEAIGVDYVDE--S----EVLTPADEENHINK-HNFRVPFVCGCRN----LGE----SLRRIREGAAMIRTKG  167 (310)
Q Consensus       103 ~~~~~~~~~~aGad~v~~--~----~~~~~~~~~~~~~~-~~~~l~v~~~v~t----~~e----a~~a~~~Gad~I~v~g  167 (310)
                      +.+++..+.+.|||.|..  +    -.-.++..++.+.. .+...++-+.+-+    +..    +..+...|+|||++.-
T Consensus         9 ~~eEA~~Al~~GaDiIDvK~P~~GaLGA~~p~vir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~~a~~GvDyVKvGl   88 (238)
T PRK02227          9 NLEEALEALAGGADIIDVKNPKEGSLGANFPWVIREIVAAVPGRKPVSATIGDVPYKPGTISLAALGAAATGADYVKVGL   88 (238)
T ss_pred             CHHHHHHHHhcCCCEEEccCCCCCCCCCCCHHHHHHHHHHhCCCCCceeeccCCCCCchHHHHHHHHHHhhCCCEEEEcC
Confidence            347888999999999973  2    11234566666655 3333555444332    212    2334457999999952


Q ss_pred             CCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEE--cc----CCCCCHHHHHH
Q 037779          168 EAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHF--AA----GGVATPADAAM  240 (310)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~i--a~----GGI~t~~di~~  240 (310)
                      ... .+..++++..+                            ...+.++.. .+..+|+.  +.    |.+. +..+..
T Consensus        89 ~~~-~~~~~~~~~~~----------------------------~v~~a~~~~~~~~~vVav~yaD~~r~~~~~-~~~l~~  138 (238)
T PRK02227         89 YGG-KTAEEAVEVMK----------------------------AVVRAVKDLDPGKIVVAAGYADAHRVGSVS-PLSLPA  138 (238)
T ss_pred             CCC-CcHHHHHHHHH----------------------------HHHHhhhhcCCCCeEEEEEecccccccCCC-hHHHHH
Confidence            211 12112221111                            011112211 12333321  22    3453 555555


Q ss_pred             HH-HcCCCEEEEccccccCCCH-----HHHHHHHHHHHHcCC
Q 037779          241 MM-QLGCDGVFVGSGVFKSGDP-----VRRARAIVQAVTNYS  276 (310)
Q Consensus       241 ~~-~~GadgV~VGsai~~~~dp-----~~~~~~~~~~~~~~~  276 (310)
                      +. +.|++++|+=|+.=.....     ...+++|.+..+++.
T Consensus       139 ~a~~aGf~g~MlDTa~Kdg~~Lfd~l~~~~L~~Fv~~ar~~G  180 (238)
T PRK02227        139 IAADAGFDGAMLDTAIKDGKSLFDHMDEEELAEFVAEARSHG  180 (238)
T ss_pred             HHHHcCCCEEEEecccCCCcchHhhCCHHHHHHHHHHHHHcc
Confidence            44 6899999998877665543     346677777776543

>PLN02411 12-oxophytodienoate reductase

Probab=94.11  E-value=0.1  Score=50.71  Aligned_cols=54  Identities=22%  Similarity=0.197  Sum_probs=44.2

Q ss_pred             HHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHHH
Q 037779          211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRARA  267 (310)
Q Consensus       211 ~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~~  267 (310)
                      .+.+.+++..++||  |+.||| +++++.++++.| ||.|.+|++++..+|....+++
T Consensus       303 ~~a~~ik~~v~~pv--i~~G~i-~~~~a~~~l~~g~aDlV~~gR~~iadPdl~~k~~~  357 (391)
T PLN02411        303 QLMRTLRRAYQGTF--MCSGGF-TRELGMQAVQQGDADLVSYGRLFISNPDLVLRFKL  357 (391)
T ss_pred             HHHHHHHHHcCCCE--EEECCC-CHHHHHHHHHcCCCCEEEECHHHHhCccHHHHHhc
Confidence            35567777778899  568999 689999999988 9999999999998887655533

>PRK06256 biotin synthase; Validated

Probab=94.04  E-value=5.5  Score=37.59  Aligned_cols=204  Identities=16%  Similarity=0.182  Sum_probs=98.3

Q ss_pred             HHHHHHHHcCCcEEEec--ccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-C
Q 037779           46 EQARIAEEAGACAVMAL--ERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-E  122 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l--~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~  122 (310)
                      +.++.+.+.|+..+...  ..-|... .+     ..-.+.++.+++..++.+.+.....+.+.++.+.++|++.+... +
T Consensus        98 ~~~~~~~~~g~~~~~l~~~g~~p~~~-~~-----~~~~e~i~~i~~~~~i~~~~~~g~l~~e~l~~LkeaG~~~v~~~lE  171 (336)
T PRK06256         98 EAAKEAIEEGAGTFCIVASGRGPSGK-EV-----DQVVEAVKAIKEETDLEICACLGLLTEEQAERLKEAGVDRYNHNLE  171 (336)
T ss_pred             HHHHHHHHCCCCEEEEEecCCCCCch-HH-----HHHHHHHHHHHhcCCCcEEecCCcCCHHHHHHHHHhCCCEEecCCc
Confidence            45777777888765322  0001100 00     00134566666655666655544445578889999999998632 2


Q ss_pred             CCChhHHHHHHHhcCCCCcEEeecCCHHHHHHH----HHhCCCEEE--EecCCCC-CchHHHHHHHHHhhcceecccccC
Q 037779          123 VLTPADEENHINKHNFRVPFVCGCRNLGESLRR----IREGAAMIR--TKGEAGT-GNIVEAVRHVRSVMGDIRVLRNMD  195 (310)
Q Consensus       123 ~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a----~~~Gad~I~--v~g~~~~-~~~~~~~~~~~~~~~~~~~l~~~~  195 (310)
                      . + ++..+.+.          ..++.++..++    .+.|..+..  +.|...+ ....+.+++++++..+...+..+.
T Consensus       172 t-s-~~~~~~i~----------~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~i~~l~  239 (336)
T PRK06256        172 T-S-RSYFPNVV----------TTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAFFLKELDADSIPINFLN  239 (336)
T ss_pred             c-C-HHHHhhcC----------CCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHHHHHHHHhCCCCEEeecccc
Confidence            2 2 23332221          12455544333    345543221  1122111 123456666666666522222211


Q ss_pred             c-hhH-HhhhccCCCcHHHHHHHHhc----CCCCEEEEccCCC-CCHHHHH-HHHHcCCCEEEEccccccCCCHHHHHHH
Q 037779          196 D-DEV-FTFAKNIAAPYDLVMQTKQL----GRLPVVHFAAGGV-ATPADAA-MMMQLGCDGVFVGSGVFKSGDPVRRARA  267 (310)
Q Consensus       196 ~-d~~-~~~~~~~~~~~~l~~~i~~~----~~iPVv~ia~GGI-~t~~di~-~~~~~GadgV~VGsai~~~~dp~~~~~~  267 (310)
                      + .++ +. ......+.+.++.+.-.    .+..|. + +||= ....+.. ..+ +||+++++|..++...++...=.+
T Consensus       240 P~pGT~l~-~~~~~~~~e~l~~ia~~Rl~~p~~~I~-~-~~gr~~~~~~~~~~~~-~g~~~~~~g~~lt~~g~~~~~d~~  315 (336)
T PRK06256        240 PIPGTPLE-NHPELTPLECLKTIAIFRLINPDKEIR-I-AGGREVNLRSLQPLGL-GGANSVIVGNYLTTVGQPATADLD  315 (336)
T ss_pred             cCCCCCCC-CCCCCCHHHHHHHHHHHHHHCCCCeeE-e-cCchhhhchhhHHHHh-ccCceeeECCcccCCCCChHHHHH
Confidence            1 010 00 00112245555444321    234443 3 4553 2334443 334 699999999999998887665555


Q ss_pred             HHHH
Q 037779          268 IVQA  271 (310)
Q Consensus       268 ~~~~  271 (310)
                      +++.
T Consensus       316 ~~~~  319 (336)
T PRK06256        316 MIED  319 (336)
T ss_pred             HHHH
Confidence            5544

>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]

Probab=94.04  E-value=2.1  Score=40.34  Aligned_cols=121  Identities=12%  Similarity=0.083  Sum_probs=74.6

Q ss_pred             CCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHH
Q 037779          138 FRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTK  217 (310)
Q Consensus       138 ~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~  217 (310)
                      .|+.++.+.-+...+....+.++.+.++-..                                     ....+.+++.+.
T Consensus       102 ~Gi~~~SSPfd~~svd~l~~~~~~ayKIaS~-------------------------------------E~~~~plik~iA  144 (347)
T COG2089         102 RGIIFFSSPFDLTAVDLLESLNPPAYKIASG-------------------------------------EINDLPLIKYIA  144 (347)
T ss_pred             cCeEEEecCCCHHHHHHHHhcCCCeEEecCc-------------------------------------cccChHHHHHHH
Confidence            5788888888888888888899988887411                                     012456777777


Q ss_pred             hcCCCCEEEEccCCCCCHHHHHHHH----HcCCCEEEEccccccCCCHHH--HHHHHHHHHHcCCChhhHHhhhhccCCc
Q 037779          218 QLGRLPVVHFAAGGVATPADAAMMM----QLGCDGVFVGSGVFKSGDPVR--RARAIVQAVTNYSDPDVLAEVSCGLGEA  291 (310)
Q Consensus       218 ~~~~iPVv~ia~GGI~t~~di~~~~----~~GadgV~VGsai~~~~dp~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (310)
                      +. ..|+  |.+-|+.+.+++.+++    +.|.-.+++=.+...-+-|.+  -++.+...-..+.++-++-.++..+-.+
T Consensus       145 ~~-~kPi--IlSTGma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~Fn~~vGlSDHT~g~~a~  221 (347)
T COG2089         145 KK-GKPI--ILSTGMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAFNAIVGLSDHTLGILAP  221 (347)
T ss_pred             hc-CCCE--EEEcccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHhCCccccccCccchhHH
Confidence            64 3599  5589999999987665    468886665555555444443  2233333333334555554554444444


Q ss_pred             eeccccc
Q 037779          292 MVGIDLN  298 (310)
Q Consensus       292 ~~~~~~~  298 (310)
                      +..+.|-
T Consensus       222 l~AvALG  228 (347)
T COG2089         222 LAAVALG  228 (347)
T ss_pred             HHHHHhc
Confidence            4433333

>PLN02561 triosephosphate isomerase

Probab=94.00  E-value=0.68  Score=42.29  Aligned_cols=34  Identities=26%  Similarity=0.415  Sum_probs=28.2

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEcccccc
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFK  257 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~  257 (310)
                      ++||  +..|+| +++++.+++. .|+||++||++=..
T Consensus       204 ~i~I--LYGGSV-~~~N~~~l~~~~~iDG~LVG~ASL~  238 (253)
T PLN02561        204 TTRI--IYGGSV-TGANCKELAAQPDVDGFLVGGASLK  238 (253)
T ss_pred             cceE--EEeCCc-CHHHHHHHhcCCCCCeEEEehHhhH
Confidence            5788  579999 5889888775 69999999998776

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=93.98  E-value=0.19  Score=46.89  Aligned_cols=89  Identities=24%  Similarity=0.316  Sum_probs=60.1

Q ss_pred             ccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccc----hh-----------h----hcCCCC-CCCChHHHHHH
Q 037779           28 VGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPA----DI-----------R----AQGGVA-RMSDPQLIKQI   87 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~----d~-----------r----~~~G~~-~~~~~~~i~~i   87 (310)
                      .|+.++|+.+.   ....++++.+.++|+++|+..|..+.    |.           +    .++|.. ....++.++++
T Consensus       169 ~Pv~vKl~~~~---~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~l~~v~~~  245 (299)
T cd02940         169 IPVIAKLTPNI---TDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIALRAVSQI  245 (299)
T ss_pred             CCeEEECCCCc---hhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHHHHHHHHH
Confidence            56777776422   11248899999999999965551110    00           1    111221 11226788899


Q ss_pred             Hhhc--CcceEeeccccchHHHHHHHHcCCCeee
Q 037779           88 KSSV--TIPVMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        88 ~~~~--~lPv~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      ++.+  ++||+....+.+.+++..+..+||+.|.
T Consensus       246 ~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~  279 (299)
T cd02940         246 ARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQ  279 (299)
T ss_pred             HHhcCCCCcEEEECCCCCHHHHHHHHHcCCChhe
Confidence            9988  8999999999888888777789999987

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]

Probab=93.94  E-value=3.7  Score=35.21  Aligned_cols=150  Identities=15%  Similarity=0.138  Sum_probs=85.8

Q ss_pred             CHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEe-ecccc---chHHH--HHHHHcCCCe
Q 037779           44 TPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMA-KARIG---HFVEA--QILEAIGVDY  117 (310)
Q Consensus        44 ~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~-kd~i~---~~~~~--~~~~~aGad~  117 (310)
                      +.+..+.+.+.-.+.+..|     +.+      .++-.+.++.+++. +.-+.+ -|.+.   +.+.+  .+....++|+
T Consensus        12 ~~~~le~~les~~~~vflL-----~~~------i~~ik~ivk~lK~~-gK~vfiHvDLv~Gl~~~e~~i~fi~~~~~pdG   79 (181)
T COG1954          12 DNKDLEKALESESQYVFLL-----TGH------ILNIKEIVKKLKNR-GKTVFIHVDLVEGLSNDEVAIEFIKEVIKPDG   79 (181)
T ss_pred             hHHHHHHHhcCCCeEEEEE-----ech------hhhHHHHHHHHHhC-CcEEEEEeHHhcccCCchHHHHHHHHhccCCe
Confidence            3467888888888877555     111      01112334444433 333333 34442   22222  2445577888


Q ss_pred             eeecCCCChhHHHHHHHhcCCC---CcEEeecCCHHHHH-HHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccc
Q 037779          118 VDESEVLTPADEENHINKHNFR---VPFVCGCRNLGESL-RRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRN  193 (310)
Q Consensus       118 v~~~~~~~~~~~~~~~~~~~~~---l~v~~~v~t~~ea~-~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~  193 (310)
                      ++.+    -...+...++++..   -.++++....+-.. ...+.++|+|-+.                         |.
T Consensus        80 IIST----k~~~i~~Akk~~~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEvL-------------------------PG  130 (181)
T COG1954          80 IIST----KSNVIKKAKKLGILAIQRLFILDSIALEKGIKQIEKSEPDFIEVL-------------------------PG  130 (181)
T ss_pred             eEEc----cHHHHHHHHHcCCceeeeeeeecHHHHHHHHHHHHHcCCCEEEEc-------------------------Cc
Confidence            8643    23445555554432   13444544444332 2334566666553                         21


Q ss_pred             cCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEE
Q 037779          194 MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVF  250 (310)
Q Consensus       194 ~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~  250 (310)
                                    .-.+.++.+.+..++||  ||+|=|.+.|++.+++++||-+|-
T Consensus       131 --------------v~Pkvi~~i~~~t~~pi--IAGGLi~t~Eev~~Al~aGA~avS  171 (181)
T COG1954         131 --------------VMPKVIKEITEKTHIPI--IAGGLIETEEEVREALKAGAVAVS  171 (181)
T ss_pred             --------------ccHHHHHHHHHhcCCCE--EeccccccHHHHHHHHHhCcEEEe
Confidence                          12456788888788999  678889999999999999998876

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=93.92  E-value=4.6  Score=36.33  Aligned_cols=71  Identities=20%  Similarity=0.116  Sum_probs=41.7

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeeec
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDES  121 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~~  121 (310)
                      ++++.+.+.|++.|-..-+.+...  .  ..+....+.++.+++.. +.++.+-..-+ .+.++.+.++|++.|.+.
T Consensus        23 ~i~~~L~~~GV~~IEvg~~~~~~~--~--p~~~~~~~~i~~l~~~~~~~~~~~l~~~~-~~~i~~a~~~g~~~i~i~   94 (265)
T cd03174          23 EIAEALDEAGVDSIEVGSGASPKA--V--PQMEDDWEVLRAIRKLVPNVKLQALVRNR-EKGIERALEAGVDEVRIF   94 (265)
T ss_pred             HHHHHHHHcCCCEEEeccCcCccc--c--ccCCCHHHHHHHHHhccCCcEEEEEccCc-hhhHHHHHhCCcCEEEEE
Confidence            679999999999872221111100  0  01122356677777765 45554432222 357888999999998743

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=93.90  E-value=1.2  Score=41.50  Aligned_cols=119  Identities=18%  Similarity=0.151  Sum_probs=75.4

Q ss_pred             CCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHh
Q 037779          139 RVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQ  218 (310)
Q Consensus       139 ~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~  218 (310)
                      +..++.++++.-.++.+.+.|.+.+.+.|......         .     .-++..   +.+    .+..-.+.++.|.+
T Consensus        17 ~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~---------~-----lG~PD~---g~l----~~~e~~~~~~~I~~   75 (292)
T PRK11320         17 KPLQIVGTINAYHALLAERAGFKAIYLSGGGVAAA---------S-----LGLPDL---GIT----TLDDVLIDVRRITD   75 (292)
T ss_pred             CcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHhH---------h-----cCCCCC---CCC----CHHHHHHHHHHHHh
Confidence            46778889999999999999999998875421100         0     001110   000    01112345555666


Q ss_pred             cCCCCEEEEccCCCCCHHHH----HHHHHcCCCEEEEccccc-------cC---CCHHHHHHHHHHHHHcCCCh
Q 037779          219 LGRLPVVHFAAGGVATPADA----AMMMQLGCDGVFVGSGVF-------KS---GDPVRRARAIVQAVTNYSDP  278 (310)
Q Consensus       219 ~~~iPVv~ia~GGI~t~~di----~~~~~~GadgV~VGsai~-------~~---~dp~~~~~~~~~~~~~~~~~  278 (310)
                      ..++||++-++.|-+++.++    +++.++|+.|+.+=--.+       ..   -.+.++++.+..+..+..++
T Consensus        76 ~~~iPviaD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~  149 (292)
T PRK11320         76 ACDLPLLVDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDP  149 (292)
T ss_pred             ccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCC
Confidence            67899999999999999885    666688999999944321       11   13456677777776665444

>PRK08662 nicotinate phosphoribosyltransferase; Reviewed

Probab=93.90  E-value=0.6  Score=44.59  Aligned_cols=34  Identities=26%  Similarity=0.399  Sum_probs=29.5

Q ss_pred             EEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          224 VVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       224 Vv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                      +.+.++||| +++++.++.++ +|.+.||+.++.++
T Consensus       262 v~IeaSGgI-~~~ni~~ya~~-vD~isvGs~~~~a~  295 (343)
T PRK08662        262 VKIFVSGGL-DPERIRELRDV-VDGFGVGTYISFAP  295 (343)
T ss_pred             eEEEEeCCC-CHHHHHHHHHh-CCEEEcCccccCCC
Confidence            444789999 69999999999 99999999998743

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=93.86  E-value=0.61  Score=43.97  Aligned_cols=79  Identities=33%  Similarity=0.470  Sum_probs=60.8

Q ss_pred             cCCccc--cC-CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHH
Q 037779           35 RGGVIM--DV-VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILE  111 (310)
Q Consensus        35 ~~g~i~--~~-~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~  111 (310)
                      +.|+..  .| .|+..++++.+.|+.+++-+   +.-+-  .|- -.++++.++.+++..++||++...|+..+++..+.
T Consensus       195 ~~Gf~v~~yc~~d~~~a~~l~~~g~~avmPl---~~pIG--sg~-gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~Am  268 (326)
T PRK11840        195 KEGFQVMVYCSDDPIAAKRLEDAGAVAVMPL---GAPIG--SGL-GIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAM  268 (326)
T ss_pred             HCCCEEEEEeCCCHHHHHHHHhcCCEEEeec---ccccc--CCC-CCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHH
Confidence            556655  34 45899999999999777533   22121  122 24489999999999999999999999888899999


Q ss_pred             HcCCCeee
Q 037779          112 AIGVDYVD  119 (310)
Q Consensus       112 ~aGad~v~  119 (310)
                      +.|+|+|+
T Consensus       269 elGadgVL  276 (326)
T PRK11840        269 ELGCDGVL  276 (326)
T ss_pred             HcCCCEEE
Confidence            99999998

>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Probab=93.86  E-value=5.5  Score=37.03  Aligned_cols=67  Identities=16%  Similarity=0.175  Sum_probs=39.9

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCC-CCCCChH---HHHHHHhhc--CcceEeeccccc----hHHHHHHHHcC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGV-ARMSDPQ---LIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIG  114 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~-~~~~~~~---~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aG  114 (310)
                      .+.++.+.+.|++++..+.        ..|. ..+...+   .++.+.+.+  ++||++...-..    .+.++.+.++|
T Consensus        24 ~~lv~~~~~~Gv~gi~v~G--------stGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~G   95 (294)
T TIGR02313        24 RELIEFQIEGGSHAISVGG--------TSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAG   95 (294)
T ss_pred             HHHHHHHHHcCCCEEEECc--------cCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcC
Confidence            3679999999999984431        1111 1122222   334444433  589987754432    23556778899


Q ss_pred             CCeee
Q 037779          115 VDYVD  119 (310)
Q Consensus       115 ad~v~  119 (310)
                      ||.+.
T Consensus        96 ad~v~  100 (294)
T TIGR02313        96 ADAAM  100 (294)
T ss_pred             CCEEE
Confidence            99987

This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.

>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed

Probab=93.78  E-value=6.1  Score=38.04  Aligned_cols=175  Identities=14%  Similarity=0.161  Sum_probs=98.9

Q ss_pred             HHHHHHHHcCCcEEEecc-cccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-CC
Q 037779           46 EQARIAEEAGACAVMALE-RVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-EV  123 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~~  123 (310)
                      +.|+.+.+.|+..+--.- ...|.+..|.|.. ......+++.++..++|++.-.+  +...++.+.+. +|.+-+. ..
T Consensus       136 ~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~-~e~l~~L~~~~~~~Gl~~~t~v~--d~~~~~~l~~~-vd~lkI~s~~  211 (360)
T PRK12595        136 AVAKALKAKGLKLLRGGAFKPRTSPYDFQGLG-VEGLKILKQVADEYGLAVISEIV--NPADVEVALDY-VDVIQIGARN  211 (360)
T ss_pred             HHHHHHHHcCCcEEEccccCCCCCCccccCCC-HHHHHHHHHHHHHcCCCEEEeeC--CHHHHHHHHHh-CCeEEECccc
Confidence            668888888887651110 1112222333332 13345667778888999977533  33566777778 8887643 33


Q ss_pred             CChhHHHHHHHhcCCCCcEEeec---CCHHHHHHHHH----hCC-CEEEEe-cCCCCCchHHHHHHHHHhhcceeccccc
Q 037779          124 LTPADEENHINKHNFRVPFVCGC---RNLGESLRRIR----EGA-AMIRTK-GEAGTGNIVEAVRHVRSVMGDIRVLRNM  194 (310)
Q Consensus       124 ~~~~~~~~~~~~~~~~l~v~~~v---~t~~ea~~a~~----~Ga-d~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~  194 (310)
                      .....+++.+.+  .+.+++++.   .|++|...|++    .|. +++-.+ |..                    .+++.
T Consensus       212 ~~n~~LL~~~a~--~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s--------------------~yp~~  269 (360)
T PRK12595        212 MQNFELLKAAGR--VNKPVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIR--------------------TYEKA  269 (360)
T ss_pred             ccCHHHHHHHHc--cCCcEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccC--------------------CCCCC
Confidence            445566666654  457777753   47787776653    455 454443 221                    11111


Q ss_pred             CchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEcc--CCCCC--HHHHHHHHHcCCCEEEEcccc
Q 037779          195 DDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAA--GGVAT--PADAAMMMQLGCDGVFVGSGV  255 (310)
Q Consensus       195 ~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~--GGI~t--~~di~~~~~~GadgV~VGsai  255 (310)
                      ..         ...+...+..+++..++||+.-++  +|-..  +.-...++.+||||+++=.-+
T Consensus       270 ~~---------~~ldl~~i~~lk~~~~~PV~~d~~Hs~G~r~~~~~~a~aAva~GAdg~~iE~H~  325 (360)
T PRK12595        270 TR---------NTLDISAVPILKQETHLPVMVDVTHSTGRRDLLLPTAKAALAIGADGVMAEVHP  325 (360)
T ss_pred             CC---------CCcCHHHHHHHHHHhCCCEEEeCCCCCcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence            11         112566677777766789853111  22100  123455678999999998877

>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=93.75  E-value=0.9  Score=44.08  Aligned_cols=155  Identities=21%  Similarity=0.321  Sum_probs=93.3

Q ss_pred             HHHHHHcCCcEEEecc-cccch--hhhcCCCCCCCChHHHHHH----HhhcCcceEeeccccchHHHHHHHHcCCCeeee
Q 037779           48 ARIAEEAGACAVMALE-RVPAD--IRAQGGVARMSDPQLIKQI----KSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE  120 (310)
Q Consensus        48 a~~~~~~Ga~~I~~l~-~~~~d--~r~~~G~~~~~~~~~i~~i----~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~  120 (310)
                      |+.+. -.+.++ ++| .||++  ++..-|..++.+++.+-.|    .+...+|+.++.++-.                 
T Consensus       100 A~lv~-nDvsgi-diN~gCpK~fSi~~gmgaalLt~~dkl~~IL~sLvk~~~vpvtckIR~L~-----------------  160 (477)
T KOG2334|consen  100 AKLVD-NDVSGI-DINMGCPKEFSIHGGMGAALLTDPDKLVAILYSLVKGNKVPVTCKIRLLD-----------------  160 (477)
T ss_pred             HHHhh-cccccc-cccCCCCCccccccCCCchhhcCHHHHHHHHHHHHhcCcccceeEEEecC-----------------
Confidence            44443 456666 677 66653  3333367788888876544    4556799999877531                 


Q ss_pred             cCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHH
Q 037779          121 SEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVF  200 (310)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~  200 (310)
                          +.++                   |++-+.+..+.|...+.++++.....                   +       
T Consensus       161 ----s~ed-------------------tL~lv~ri~~tgi~ai~vh~rt~d~r-------------------~-------  191 (477)
T KOG2334|consen  161 ----SKED-------------------TLKLVKRICATGIAAITVHCRTRDER-------------------N-------  191 (477)
T ss_pred             ----Cccc-------------------HHHHHHHHHhcCCceEEEEeeccccC-------------------C-------
Confidence                1111                   12223344456777888886533221                   1       


Q ss_pred             hhhccCCCcHHHHHHHHhcCC-CCEEEEccCCCCC---HHHHHHHHH-cCCCEEEEccccccCCC---------HHHHHH
Q 037779          201 TFAKNIAAPYDLVMQTKQLGR-LPVVHFAAGGVAT---PADAAMMMQ-LGCDGVFVGSGVFKSGD---------PVRRAR  266 (310)
Q Consensus       201 ~~~~~~~~~~~l~~~i~~~~~-iPVv~ia~GGI~t---~~di~~~~~-~GadgV~VGsai~~~~d---------p~~~~~  266 (310)
                          ......+.++.+....+ +||  |++||..+   ..|+....+ .|+++|++.++-..++.         ..+.++
T Consensus       192 ----~~~~~~~~i~~i~~~~~~V~v--i~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n~SiF~~eG~~~~~~~~~  265 (477)
T KOG2334|consen  192 ----QEPATKDYIREIAQACQMVPV--IVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAESNPSIFREEGCLSEKEVIR  265 (477)
T ss_pred             ----CCCCCHHHHHHHHHHhccceE--eeccchhhHHhhhhHHHHHHHhccchhhhhHhhhcCCceeeecCCchHHHHHH
Confidence                11234556666666554 899  78999988   556666664 69999999987666442         245666


Q ss_pred             HHHHHHHcCC
Q 037779          267 AIVQAVTNYS  276 (310)
Q Consensus       267 ~~~~~~~~~~  276 (310)
                      .|.+.-.+|+
T Consensus       266 ~fl~~a~~~d  275 (477)
T KOG2334|consen  266 EFLRLAVQYD  275 (477)
T ss_pred             HHHHHHHHHh
Confidence            6666544443

>TIGR00742 yjbN tRNA dihydrouridine synthase A

Probab=93.65  E-value=0.39  Score=45.38  Aligned_cols=106  Identities=11%  Similarity=0.002  Sum_probs=65.4

Q ss_pred             cccceeeecCCccccC--CC-HHHHHHHHHcCCcEEEecccccchhhhcCCCC----CCCChHHHHHHHhhc-CcceEee
Q 037779           27 KVGLAQMLRGGVIMDV--VT-PEQARIAEEAGACAVMALERVPADIRAQGGVA----RMSDPQLIKQIKSSV-TIPVMAK   98 (310)
Q Consensus        27 ~~~~~~~l~~g~i~~~--~~-~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~----~~~~~~~i~~i~~~~-~lPv~~k   98 (310)
                      ..|+.+++|.|+-...  .+ .++++.++++|+++|.+.-+... ...+.|..    ...+.+.++++++.+ ++||+.+
T Consensus       123 ~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~-~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~N  201 (318)
T TIGR00742       123 NIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAW-LSGLSPKENREIPPLRYERVYQLKKDFPHLTIEIN  201 (318)
T ss_pred             CCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchh-hcCCCccccccCCchhHHHHHHHHHhCCCCcEEEE
Confidence            3588999999874322  11 37799999999999843312110 01112211    011456788888877 8999999


Q ss_pred             ccccchHHHHHHHHcCCCeeeec-CCCChhHHHHHHH
Q 037779           99 ARIGHFVEAQILEAIGVDYVDES-EVLTPADEENHIN  134 (310)
Q Consensus        99 d~i~~~~~~~~~~~aGad~v~~~-~~~~~~~~~~~~~  134 (310)
                      ..+.+.++++.+.+ |+|.|-+. ..+..+.+...+.
T Consensus       202 GdI~s~~da~~~l~-g~dgVMigRgal~nP~if~~~~  237 (318)
T TIGR00742       202 GGIKNSEQIKQHLS-HVDGVMVGREAYENPYLLANVD  237 (318)
T ss_pred             CCcCCHHHHHHHHh-CCCEEEECHHHHhCCHHHHHHH
Confidence            88877777766664 99998743 2233334444443

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>TIGR00284 dihydropteroate synthase-related protein

Probab=93.57  E-value=9  Score=38.51  Aligned_cols=82  Identities=20%  Similarity=0.069  Sum_probs=49.4

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeecCCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLT  125 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~~~  125 (310)
                      +.|+.+.+.||+.| +++..++.+    +..+  -...++.+++.+++|+++-.+  +.+.++.+.++||+.|.......
T Consensus       169 ~~A~~~~~~GADII-DIG~~st~p----~~~~--v~~~V~~l~~~~~~pISIDT~--~~~v~eaAL~aGAdiINsVs~~~  239 (499)
T TIGR00284       169 GLAARMERDGADMV-ALGTGSFDD----DPDV--VKEKVKTALDALDSPVIADTP--TLDELYEALKAGASGVIMPDVEN  239 (499)
T ss_pred             HHHHHHHHCCCCEE-EECCCcCCC----cHHH--HHHHHHHHHhhCCCcEEEeCC--CHHHHHHHHHcCCCEEEECCccc
Confidence            67999999999998 775222211    0000  023456666666889877655  33667788889999987322223


Q ss_pred             hhHHHHHHHhc
Q 037779          126 PADEENHINKH  136 (310)
Q Consensus       126 ~~~~~~~~~~~  136 (310)
                      .+++...+..+
T Consensus       240 ~d~~~~l~a~~  250 (499)
T TIGR00284       240 AVELASEKKLP  250 (499)
T ss_pred             hhHHHHHHHHc
Confidence            34444444443

This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.

>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=93.56  E-value=2.6  Score=38.07  Aligned_cols=186  Identities=19%  Similarity=0.194  Sum_probs=98.9

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-ecCC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEV  123 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~  123 (310)
                      .+.|..++.+||++|..- + ..|.|.-       ..++++.+++.+..|+-+-... +.+..+.+.+.--|.+. .++.
T Consensus        25 v~aA~~a~~aGAdgITvH-l-ReDrRHI-------~d~Dv~~L~~~~~~~lNlE~a~-t~e~~~ia~~~kP~~vtLVPE~   94 (239)
T PF03740_consen   25 VEAARIAEEAGADGITVH-L-REDRRHI-------QDRDVRRLRELVKTPLNLEMAP-TEEMVDIALKVKPDQVTLVPEK   94 (239)
T ss_dssp             HHHHHHHHHTT-SEEEEE-B--TT-SSS--------HHHHHHHHHH-SSEEEEEEES-SHHHHHHHHHH--SEEEEE--S
T ss_pred             HHHHHHHHHcCCCEEEec-c-CCCcCcC-------CHHHHHHHHHHcccCEEeccCC-CHHHHHHHHhCCcCEEEECCCC
Confidence            378999999999998432 1 1244433       3788999999988885332211 23556777888888765 2211


Q ss_pred             ---------CC----hh---HHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcc
Q 037779          124 ---------LT----PA---DEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGD  187 (310)
Q Consensus       124 ---------~~----~~---~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~  187 (310)
                               +.    ..   .+++.++..+..+-++++. ++++++.+.+.|+|+|=.+    ||.+..+..        
T Consensus        95 r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP-~~~qi~~A~~~Gad~VELh----TG~yA~a~~--------  161 (239)
T PF03740_consen   95 REELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDP-DPEQIEAAKELGADRVELH----TGPYANAFD--------  161 (239)
T ss_dssp             GGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S--HHHHHHHHHTT-SEEEEE----THHHHHHSS--------
T ss_pred             CCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCC-CHHHHHHHHHcCCCEEEEe----hhHhhhhcC--------
Confidence                     11    12   3445555555555666664 5778888999999999876    222211100        


Q ss_pred             eecccccCchhHHhhhccCCCcHHHHHHHHh------cCCCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccCC-
Q 037779          188 IRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQ------LGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSG-  259 (310)
Q Consensus       188 ~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~------~~~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~~-  259 (310)
                             ..+         ....+++..+.+      ...+-|  =|+.|+ +.+++..+.+. +..-+-+|-+|+..- 
T Consensus       162 -------~~~---------~~~~ell~~l~~aa~~a~~lGL~V--nAGHgL-~y~N~~~i~~i~~i~EvnIGHaiia~Al  222 (239)
T PF03740_consen  162 -------DAE---------EAEEELLERLRDAARYAHELGLGV--NAGHGL-NYDNVRPIAAIPPIEEVNIGHAIIARAL  222 (239)
T ss_dssp             -------HHH---------HHHHHHHHHHHHHHHHHHHTT-EE--EEETT---TTTHHHHHTSTTEEEEEE-HHHHHHHH
T ss_pred             -------CHH---------HHHHHHHHHHHHHHHHHHHcCCEE--ecCCCC-CHHHHHHHHhCCCceEEecCHHHHHHHH
Confidence                   000         000111122211      134555  578999 58999999875 899999999887521 


Q ss_pred             --CHHHHHHHHHHHH
Q 037779          260 --DPVRRARAIVQAV  272 (310)
Q Consensus       260 --dp~~~~~~~~~~~  272 (310)
                        -..++++++++.+
T Consensus       223 ~~Gl~~aV~~m~~~~  237 (239)
T PF03740_consen  223 FVGLEEAVREMKELM  237 (239)
T ss_dssp             HH-HHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHh
Confidence              1234555555544

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....

>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein

Probab=93.44  E-value=0.89  Score=40.72  Aligned_cols=57  Identities=19%  Similarity=0.310  Sum_probs=45.4

Q ss_pred             CCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeee
Q 037779           55 GACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        55 Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      |...+ .|       -+.+|.....+++.++.+++.+ ++|+++...+.+.++++.+.++|||.|.
T Consensus       149 g~~~v-Yl-------E~gs~~g~~v~~e~i~~v~~~~~~~pl~vGGGIrs~e~a~~l~~aGAD~VV  206 (223)
T TIGR01768       149 GMPII-YL-------EAGSGAPEPVPPELVAEVKKVLDKARLFVGGGIRSVEKAREMAEAGADTIV  206 (223)
T ss_pred             CCcEE-EE-------EecCCCCCCcCHHHHHHHHHHcCCCCEEEecCCCCHHHHHHHHHcCCCEEE
Confidence            56655 55       1334444456789999999998 9999999999888899999999999987

This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=93.41  E-value=0.43  Score=42.28  Aligned_cols=80  Identities=26%  Similarity=0.263  Sum_probs=55.0

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-  119 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-  119 (310)
                      .+.+++.++.+.+.|++.+..-+.-.+....   .......+.++++++.+++|+++...+.+.+.++.+.++|||.+. 
T Consensus       129 ~v~t~~ea~~a~~~G~d~i~~~~~g~t~~~~---~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~GadgV~v  205 (219)
T cd04729         129 DISTLEEALNAAKLGFDIIGTTLSGYTEETA---KTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGADAVVV  205 (219)
T ss_pred             ECCCHHHHHHHHHcCCCEEEccCcccccccc---CCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence            4456788899999999988321100011000   011234688999999889999999888777788888899999998 


Q ss_pred             ecCC
Q 037779          120 ESEV  123 (310)
Q Consensus       120 ~~~~  123 (310)
                      .+..
T Consensus       206 Gsal  209 (219)
T cd04729         206 GSAI  209 (219)
T ss_pred             chHH
Confidence            4443

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=93.39  E-value=1.3  Score=44.45  Aligned_cols=113  Identities=16%  Similarity=0.137  Sum_probs=70.0

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeec-cccchHHHHHHHHcCCCeeee--c
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKA-RIGHFVEAQILEAIGVDYVDE--S  121 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd-~i~~~~~~~~~~~aGad~v~~--~  121 (310)
                      .+.++.+.++|++.| .+     |..  .|.. ....+.++.+++....++.+.. -+.+.+.++.+.++|||+|..  .
T Consensus       244 ~~ra~~Lv~aGvd~i-~v-----d~a--~g~~-~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~vg~g  314 (502)
T PRK07107        244 AERVPALVEAGADVL-CI-----DSS--EGYS-EWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKVGIG  314 (502)
T ss_pred             HHHHHHHHHhCCCeE-ee-----cCc--cccc-HHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEECCC
Confidence            578999999999998 33     211  1110 0115678888887653333332 233557888899999999752  1


Q ss_pred             -------C-C--CChh------HHHHHH----HhcCCCCcEEee--cCCHHHHHHHHHhCCCEEEEe
Q 037779          122 -------E-V--LTPA------DEENHI----NKHNFRVPFVCG--CRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       122 -------~-~--~~~~------~~~~~~----~~~~~~l~v~~~--v~t~~ea~~a~~~Gad~I~v~  166 (310)
                             . .  ..++      ++.+..    ++.+.+++++++  +++.-++.+|+.+|||.+.+.
T Consensus       315 ~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G  381 (502)
T PRK07107        315 GGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLG  381 (502)
T ss_pred             CCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeC
Confidence                   0 1  1111      222221    112333788885  899999999999999999885

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=93.39  E-value=1.5  Score=36.93  Aligned_cols=109  Identities=23%  Similarity=0.218  Sum_probs=64.0

Q ss_pred             HHHHHHcCCcEEEecc-cccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeeecCC-C
Q 037779           48 ARIAEEAGACAVMALE-RVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDESEV-L  124 (310)
Q Consensus        48 a~~~~~~Ga~~I~~l~-~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~-~  124 (310)
                      ++.+.++|+++| .++ ..+...+ +       ..+.++++++.. ++|+.++...........+.+.|+|++..... .
T Consensus        77 a~~~~~~g~d~v-~l~~~~~~~~~-~-------~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~  147 (200)
T cd04722          77 AAAARAAGADGV-EIHGAVGYLAR-E-------DLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGG  147 (200)
T ss_pred             HHHHHHcCCCEE-EEeccCCcHHH-H-------HHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcC
Confidence            568899999998 442 1110000 0       155677888776 78888875443211111267799999873211 0


Q ss_pred             -----Ch----hHHHHHHHhcCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779          125 -----TP----ADEENHINKHNFRVPFVC--GCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       125 -----~~----~~~~~~~~~~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                           ..    ......+. ...++++++  ++++.+++.++.+.|||.+.+.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~-~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vg  199 (200)
T cd04722         148 GGGGRDAVPIADLLLILAK-RGSKVPVIAGGGINDPEDAAEALALGADGVIVG  199 (200)
T ss_pred             CCCCccCchhHHHHHHHHH-hcCCCCEEEECCCCCHHHHHHHHHhCCCEEEec
Confidence                 01    12222222 234555555  4888899999998999998773

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised

Probab=93.33  E-value=5.9  Score=35.69  Aligned_cols=143  Identities=21%  Similarity=0.209  Sum_probs=77.4

Q ss_pred             chHHHHHHHHcCCCeeee--c----CCCChhHHHHHHHh-cCCCCcEEeecCCH----H----HHHHHHHhCCCEEEEec
Q 037779          103 HFVEAQILEAIGVDYVDE--S----EVLTPADEENHINK-HNFRVPFVCGCRNL----G----ESLRRIREGAAMIRTKG  167 (310)
Q Consensus       103 ~~~~~~~~~~aGad~v~~--~----~~~~~~~~~~~~~~-~~~~l~v~~~v~t~----~----ea~~a~~~Gad~I~v~g  167 (310)
                      +.+++..+.+.|+|.|..  +    -.-.++..++.+.. ..-..++-+.+-+.    .    .+..+...|+|||++. 
T Consensus         9 ~~~EA~~a~~~gaDiID~K~P~~GaLGA~~~~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvKvG-   87 (235)
T PF04476_consen    9 NVEEAEEALAGGADIIDLKNPAEGALGALFPWVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATGVDYVKVG-   87 (235)
T ss_pred             CHHHHHHHHhCCCCEEEccCCCCCCCCCCCHHHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcCCCEEEEe-
Confidence            346888889999999972  2    11235566666665 22235555544332    1    2233445799999995 


Q ss_pred             CCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEc------cCCCCCHHHHHH
Q 037779          168 EAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFA------AGGVATPADAAM  240 (310)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia------~GGI~t~~di~~  240 (310)
                      .....+..++++..+.+                            .+.+++. .+..+|+..      .|++ +|-++..
T Consensus        88 l~g~~~~~~a~e~l~~v----------------------------~~av~~~~~~~~vVAv~yAD~~r~~~~-~p~~l~~  138 (235)
T PF04476_consen   88 LFGCKDYDEAIEALEAV----------------------------VRAVKDFDPDKKVVAVGYADAQRVGSI-SPLDLPE  138 (235)
T ss_pred             cCCCCCHHHHHHHHHHH----------------------------HHHHhhhCCCcEEEEEEecchhhhcCC-CHHHHHH
Confidence            32223333333322211                            1112211 111222111      1455 4666665


Q ss_pred             HH-HcCCCEEEEccccccCCCH-----HHHHHHHHHHHHcC
Q 037779          241 MM-QLGCDGVFVGSGVFKSGDP-----VRRARAIVQAVTNY  275 (310)
Q Consensus       241 ~~-~~GadgV~VGsai~~~~dp-----~~~~~~~~~~~~~~  275 (310)
                      +. ++|++++|+=|+.=.....     ...+.+|.+..+.+
T Consensus       139 ~a~~aG~~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~  179 (235)
T PF04476_consen  139 IAAEAGFDGVMLDTADKDGGSLFDHLSEEELAEFVAQARAH  179 (235)
T ss_pred             HHHHcCCCEEEEecccCCCCchhhcCCHHHHHHHHHHHHHc
Confidence            54 7899999998877665543     45667777776654

>COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism]

Probab=93.25  E-value=4.5  Score=36.68  Aligned_cols=35  Identities=34%  Similarity=0.594  Sum_probs=30.1

Q ss_pred             HHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779          239 AMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       239 ~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                      ......|+|-++||+.|+.++||.+..++..+.+.
T Consensus       201 ~~A~~~Gad~ivVGR~I~~a~~p~~a~~~i~~~~~  235 (240)
T COG0284         201 GEAVRAGADYIVVGRPITQAGDPVAAARAIAREIA  235 (240)
T ss_pred             HHHHhcCCCEEEEChhhhcCCChHHHHHHHHHHHH
Confidence            45667899999999999999999998888777654

>TIGR00674 dapA dihydrodipicolinate synthase

Probab=93.22  E-value=6.8  Score=36.11  Aligned_cols=67  Identities=19%  Similarity=0.268  Sum_probs=39.1

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCC-CCCCChH---HHHHHHhhc--CcceEeeccccc----hHHHHHHHHcC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGV-ARMSDPQ---LIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIG  114 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~-~~~~~~~---~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aG  114 (310)
                      .+.++.+.+.|++++..+.        ..|. ..+...+   .++.+.+.+  ++||++...-..    .+.++.+.++|
T Consensus        22 ~~~i~~l~~~Gv~Gi~~~G--------stGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G   93 (285)
T TIGR00674        22 EKLIDFQIENGTDAIVVVG--------TTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVG   93 (285)
T ss_pred             HHHHHHHHHcCCCEEEECc--------cCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcC
Confidence            3678888999999984331        0111 1122222   333344333  488887743321    24567778899


Q ss_pred             CCeee
Q 037779          115 VDYVD  119 (310)
Q Consensus       115 ad~v~  119 (310)
                      +|++.
T Consensus        94 ad~v~   98 (285)
T TIGR00674        94 ADGFL   98 (285)
T ss_pred             CCEEE
Confidence            99987

Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.

>PRK07188 nicotinate phosphoribosyltransferase; Provisional

Probab=93.22  E-value=1.2  Score=42.80  Aligned_cols=34  Identities=18%  Similarity=0.127  Sum_probs=30.1

Q ss_pred             EEEccCCCCCHHHHHHHHHcC--CCEEEEccccccCC
Q 037779          225 VHFAAGGVATPADAAMMMQLG--CDGVFVGSGVFKSG  259 (310)
Q Consensus       225 v~ia~GGI~t~~di~~~~~~G--adgV~VGsai~~~~  259 (310)
                      .++++||| +++++.++.+.|  +|++.|||.+....
T Consensus       282 kI~aSgGi-ne~~I~~~~~~g~piD~~GVGt~l~~~~  317 (352)
T PRK07188        282 KIIVSSGF-DAKKIREFEAQNVPVDIYGVGSSLLKIN  317 (352)
T ss_pred             EEEEeCCC-CHHHHHHHHHcCCCccEEecCcccccCc
Confidence            33789999 599999999999  79999999999864

>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=93.13  E-value=6.6  Score=35.99  Aligned_cols=178  Identities=17%  Similarity=0.168  Sum_probs=97.9

Q ss_pred             HHHHHHHHcCCcEEEe-cccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-CC
Q 037779           46 EQARIAEEAGACAVMA-LERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-EV  123 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~-l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~~  123 (310)
                      ++|+.+.+.|+..... +.-..|.+..|.|.. ...+..++++++..++|++.-.+  +...++.+.+. +|.+-+. ..
T Consensus        43 ~~A~~lk~~~~k~~r~~~~KpRtsp~s~~g~g-~~gl~~l~~~~~~~Gl~~~t~~~--d~~~~~~l~~~-~d~lkI~s~~  118 (260)
T TIGR01361        43 ETARFVKEAGAKILRGGAFKPRTSPYSFQGLG-EEGLKLLRRAADEHGLPVVTEVM--DPRDVEIVAEY-ADILQIGARN  118 (260)
T ss_pred             HHHHHHHHHHHHhccCceecCCCCCccccccH-HHHHHHHHHHHHHhCCCEEEeeC--ChhhHHHHHhh-CCEEEECccc
Confidence            5677777776663210 000001111222221 22355677788888999977544  33566667777 8877644 33


Q ss_pred             CChhHHHHHHHhcCCCCcEEeec--C-CHHHHHHHHH----hCC-CEEEEe-cC-CCCCchHHHHHHHHHhhcceecccc
Q 037779          124 LTPADEENHINKHNFRVPFVCGC--R-NLGESLRRIR----EGA-AMIRTK-GE-AGTGNIVEAVRHVRSVMGDIRVLRN  193 (310)
Q Consensus       124 ~~~~~~~~~~~~~~~~l~v~~~v--~-t~~ea~~a~~----~Ga-d~I~v~-g~-~~~~~~~~~~~~~~~~~~~~~~l~~  193 (310)
                      .....+++.+.+  .+.+++++.  . |++|...+++    .|. +++-.+ |. .|.+                    +
T Consensus       119 ~~n~~LL~~~a~--~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~--------------------~  176 (260)
T TIGR01361       119 MQNFELLKEVGK--QGKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEK--------------------A  176 (260)
T ss_pred             ccCHHHHHHHhc--CCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCC--------------------C
Confidence            445566666654  467777764  3 7887766653    466 444444 22 2211                    0


Q ss_pred             cCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEc--cCCCCC--HHHHHHHHHcCCCEEEEccccccCC
Q 037779          194 MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFA--AGGVAT--PADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       194 ~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia--~GGI~t--~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                                .....++..+..+++..++||+..+  ++|-..  +.-...+..+||+|+++=+-+.-..
T Consensus       177 ----------~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t~d~  236 (260)
T TIGR01361       177 ----------TRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPDPEK  236 (260)
T ss_pred             ----------CcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCCccc
Confidence                      0122356667777765578995311  233111  3445567789999999988776643

The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.

>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional

Probab=93.09  E-value=7.6  Score=36.26  Aligned_cols=82  Identities=22%  Similarity=0.232  Sum_probs=46.0

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCC-CCCCCh---HHHHHHHhhc--CcceEeeccccc---hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGV-ARMSDP---QLIKQIKSSV--TIPVMAKARIGH---FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~-~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~---~~~~~~~~~aGad  116 (310)
                      +.++.+.+.|+++|..+.        ..|. ..+...   +.++.+++.+  ++||++...-..   .+.++.+.++|+|
T Consensus        32 ~li~~l~~~Gv~Gi~~~G--------stGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~Gad  103 (303)
T PRK03620         32 EHLEWLAPYGAAALFAAG--------GTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAGAD  103 (303)
T ss_pred             HHHHHHHHcCCCEEEECc--------CCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhCCC
Confidence            679999999999984331        0111 112222   2344444444  589988654322   2455777889999


Q ss_pred             eeee-cCC---CChhHHHHHHHh
Q 037779          117 YVDE-SEV---LTPADEENHINK  135 (310)
Q Consensus       117 ~v~~-~~~---~~~~~~~~~~~~  135 (310)
                      ++.. +..   .+..++.+.++.
T Consensus       104 av~~~pP~y~~~~~~~i~~~f~~  126 (303)
T PRK03620        104 GILLLPPYLTEAPQEGLAAHVEA  126 (303)
T ss_pred             EEEECCCCCCCCCHHHHHHHHHH
Confidence            9873 322   233445555443

>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV

Probab=93.08  E-value=8.1  Score=37.27  Aligned_cols=45  Identities=29%  Similarity=0.552  Sum_probs=33.2

Q ss_pred             CCEEEEccCCCCCHHHHHHHHH-cCCCEE-EEccccccCC-CHHHHHHHHHH
Q 037779          222 LPVVHFAAGGVATPADAAMMMQ-LGCDGV-FVGSGVFKSG-DPVRRARAIVQ  270 (310)
Q Consensus       222 iPVv~ia~GGI~t~~di~~~~~-~GadgV-~VGsai~~~~-dp~~~~~~~~~  270 (310)
                      .|+   .+||++ +..+.++++ +|.|-+ .+|..++..+ .+.+-+++|++
T Consensus       319 ~Pv---~sgG~~-~~~v~~l~~~~G~dv~~~~GGgi~gHp~g~~ag~~a~r~  366 (367)
T cd08205         319 LPV---PSGGMH-PGRVPELYRDYGPDVILLAGGGILGHPDGAAAGVRAFRQ  366 (367)
T ss_pred             eee---ccCCCC-HHHHHHHHHHhCCcEEEEcCchhcCCCCChHHHHHHHhc
Confidence            355   579994 899999997 587754 4678898887 46767777764

Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl

>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase

Probab=93.07  E-value=1.6  Score=40.83  Aligned_cols=138  Identities=15%  Similarity=0.076  Sum_probs=71.2

Q ss_pred             ccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhc--CCCCCCCChHHHHHHHhhc----CcceEeeccc
Q 037779           28 VGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQ--GGVARMSDPQLIKQIKSSV----TIPVMAKARI  101 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~--~G~~~~~~~~~i~~i~~~~----~lPv~~kd~i  101 (310)
                      .|+.+=...|.-......+.++.++++|+.+| .++......++.  .|....+..+.+++|+...    +.++++.-+.
T Consensus        78 lPv~aD~dtGyG~~~~v~r~V~~~~~aGaagi-~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ART  156 (294)
T TIGR02319        78 VPVIMDADAGYGNAMSVWRATREFERVGIVGY-HLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIART  156 (294)
T ss_pred             CCEEEECCCCCCCcHHHHHHHHHHHHcCCeEE-EEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEe
Confidence            45555555554332222467999999999999 454111100111  1221223334455554432    2345554333


Q ss_pred             c---------chHHHHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCC--cEEeecCCH-HHHHHHHHhCCCEEEEe
Q 037779          102 G---------HFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRV--PFVCGCRNL-GESLRRIREGAAMIRTK  166 (310)
Q Consensus       102 ~---------~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l--~v~~~v~t~-~ea~~a~~~Gad~I~v~  166 (310)
                      +         ..+..+.+.++|||.|..+...++.++.+..++-...+  .++..-.++ -......++|.+.+...
T Consensus       157 Da~~~~g~deaI~Ra~aY~eAGAD~ifi~~~~~~~ei~~~~~~~~~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~  233 (294)
T TIGR02319       157 DARESFGLDEAIRRSREYVAAGADCIFLEAMLDVEEMKRVRDEIDAPLLANMVEGGKTPWLTTKELESIGYNLAIYP  233 (294)
T ss_pred             cccccCCHHHHHHHHHHHHHhCCCEEEecCCCCHHHHHHHHHhcCCCeeEEEEecCCCCCCCHHHHHHcCCcEEEEc
Confidence            2         12456788889999998665556666665555421112  122221211 13445556798888764

This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.

>PLN02858 fructose-bisphosphate aldolase

Probab=92.87  E-value=7.2  Score=44.10  Aligned_cols=174  Identities=14%  Similarity=0.133  Sum_probs=104.0

Q ss_pred             HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CCC
Q 037779           47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EVL  124 (310)
Q Consensus        47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~~  124 (310)
                      +.+++++.+...|.++.  |.-. .+.|.   .....++...+..++||.++ |.-.+++.+..+.++|-+.|-++ +.+
T Consensus      1130 vi~aAe~~~sPvIl~~~--~~~~-~~~~~---~~~~~~~~~a~~~~vpV~lHLDHg~~~~~i~~ai~~Gf~SVM~DgS~l 1203 (1378)
T PLN02858       1130 VVAAAEAEKSPAILQVH--PGAL-KQGGI---PLVSCCIAAAEQASVPITVHFDHGTSKHELLEALELGFDSVMVDGSHL 1203 (1378)
T ss_pred             HHHHHHHhCCCEEEECC--ccHH-hhcCH---HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCCEEEEeCCCC
Confidence            46777777888775552  1111 12221   11333455556678999887 33335677888888999998632 223


Q ss_pred             ChhH-------HHHHHHhcCCCCcEEee-------------------cCCHHHHHHHH-HhCCCEEEEe-cCCCCCchHH
Q 037779          125 TPAD-------EENHINKHNFRVPFVCG-------------------CRNLGESLRRI-REGAAMIRTK-GEAGTGNIVE  176 (310)
Q Consensus       125 ~~~~-------~~~~~~~~~~~l~v~~~-------------------v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~~  176 (310)
                      +.++       +++..+.  .++.+=.+                   .++++|+.+-. +.|+|.+.+. |..++.    
T Consensus      1204 ~~eeNi~~t~~vv~~Ah~--~gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~~a~~Fv~~TgvD~LAvaiGt~HG~---- 1277 (1378)
T PLN02858       1204 SFTENISYTKSISSLAHS--KGLMVEAELGRLSGTEDGLTVEEYEAKLTDVDQAKEFIDETGIDALAVCIGNVHGK---- 1277 (1378)
T ss_pred             CHHHHHHHHHHHHHHHHH--cCCEEEEEecccCCccCCccccccccCCCCHHHHHHHHHhcCCcEEeeeccccccc----
Confidence            3332       2233332  22222111                   23566766655 4578877654 332221    


Q ss_pred             HHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC---CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779          177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG---RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       177 ~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~---~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs  253 (310)
                                    ++.-          ...-++++++.+.+..   ++|+|.=-.+|+. .+++++++++|..-|=++|
T Consensus      1278 --------------Y~~~----------~p~l~~~~l~~i~~~~~~~~vpLVlHGgSG~~-~~~~~~ai~~Gi~KiNi~T 1332 (1378)
T PLN02858       1278 --------------YPAS----------GPNLRLDLLKELRALSSKKGVLLVLHGASGLP-ESLIKECIENGVRKFNVNT 1332 (1378)
T ss_pred             --------------CCCC----------CCccCHHHHHHHHHHhcCCCCcEEEeCCCCCC-HHHHHHHHHcCCeEEEeCH
Confidence                          0100          0122688899998876   7998876777884 7899999999999999999


Q ss_pred             cccc
Q 037779          254 GVFK  257 (310)
Q Consensus       254 ai~~  257 (310)
                      .+..
T Consensus      1333 ~~~~ 1336 (1378)
T PLN02858       1333 EVRT 1336 (1378)
T ss_pred             HHHH
Confidence            7754

>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase

Probab=92.85  E-value=8  Score=35.91  Aligned_cols=83  Identities=16%  Similarity=0.117  Sum_probs=45.7

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChH---HHHHHHhhc--CcceEeeccccc---hHHHHHHHHcCCCe
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQ---LIKQIKSSV--TIPVMAKARIGH---FVEAQILEAIGVDY  117 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~---~i~~i~~~~--~lPv~~kd~i~~---~~~~~~~~~aGad~  117 (310)
                      +.++.+.+.|++++..+.       ..+-...+...+   .++.+.+.+  ++||++...-..   .+.++.+.++|||.
T Consensus        30 ~li~~l~~~Gv~gi~v~G-------stGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai~~a~~a~~~Gada  102 (296)
T TIGR03249        30 ENIEWLLGYGLEALFAAG-------GTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEIARLAEKAGADG  102 (296)
T ss_pred             HHHHHHHhcCCCEEEECC-------CCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCccHHHHHHHHHHHHHhCCCE
Confidence            679999999999984431       001011122222   233344433  489988754322   24567778899999


Q ss_pred             eee-cCC---CChhHHHHHHHh
Q 037779          118 VDE-SEV---LTPADEENHINK  135 (310)
Q Consensus       118 v~~-~~~---~~~~~~~~~~~~  135 (310)
                      +.. +..   .+..++.+.++.
T Consensus       103 v~~~pP~y~~~s~~~i~~~f~~  124 (296)
T TIGR03249       103 YLLLPPYLINGEQEGLYAHVEA  124 (296)
T ss_pred             EEECCCCCCCCCHHHHHHHHHH
Confidence            873 322   233455555543

5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.

>PRK04147 N-acetylneuraminate lyase; Provisional

Probab=92.84  E-value=5.3  Score=37.05  Aligned_cols=179  Identities=15%  Similarity=0.090  Sum_probs=0.0

Q ss_pred             CCccccccceeeecCCccccCCCHHHHHHHHH-cCCcEEEecc------cccchhhhcCCCCCCCChHHHHHHHhhc--C
Q 037779           22 SPFSVKVGLAQMLRGGVIMDVVTPEQARIAEE-AGACAVMALE------RVPADIRAQGGVARMSDPQLIKQIKSSV--T   92 (310)
Q Consensus        22 sp~~~~~~~~~~l~~g~i~~~~~~~~a~~~~~-~Ga~~I~~l~------~~~~d~r~~~G~~~~~~~~~i~~i~~~~--~   92 (310)
                      +||.         ..|.+....-.+.++.+.+ .|+++|..+-      ....+.|          .+.++.+.+.+  +
T Consensus        13 TPf~---------~dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr----------~~~~~~~~~~~~~~   73 (293)
T PRK04147         13 TPFD---------EDGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEK----------KQVLEIVAEEAKGK   73 (293)
T ss_pred             CcCC---------CCCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHH----------HHHHHHHHHHhCCC


Q ss_pred             cceEeeccccch----HHHHHHHHcCCCeee-ec---CCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEE
Q 037779           93 IPVMAKARIGHF----VEAQILEAIGVDYVD-ES---EVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIR  164 (310)
Q Consensus        93 lPv~~kd~i~~~----~~~~~~~~aGad~v~-~~---~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~  164 (310)
                      +||++...-...    +.++.+.++|||++. .+   ...+..++.+.++.                  .+...+..++.
T Consensus        74 ~~viagvg~~~t~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~------------------va~a~~lPv~i  135 (293)
T PRK04147         74 VKLIAQVGSVNTAEAQELAKYATELGYDAISAVTPFYYPFSFEEICDYYRE------------------IIDSADNPMIV  135 (293)
T ss_pred             CCEEecCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHH------------------HHHhCCCCEEE


Q ss_pred             EecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHH---
Q 037779          165 TKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMM---  241 (310)
Q Consensus       165 v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~---  241 (310)
                      .|-+..++.                                 ..+.+.+.++.+..++--+-.++|.+....++.+.   
T Consensus       136 Yn~P~~tg~---------------------------------~l~~~~l~~L~~~pnvvgiK~s~~d~~~~~~~~~~~~~  182 (293)
T PRK04147        136 YNIPALTGV---------------------------------NLSLDQFNELFTLPKVIGVKQTAGDLYQLERIRKAFPD  182 (293)
T ss_pred             EeCchhhcc---------------------------------CCCHHHHHHHhcCCCEEEEEeCCCCHHHHHHHHHhCCC


Q ss_pred             --------------HHcCCCEEEEccccccCCCHHHHHHHHHH
Q 037779          242 --------------MQLGCDGVFVGSGVFKSGDPVRRARAIVQ  270 (310)
Q Consensus       242 --------------~~~GadgV~VGsai~~~~dp~~~~~~~~~  270 (310)
                                    +.+|++|++.|.+=+-++...+..+.+.+
T Consensus       183 ~~v~~G~d~~~~~~l~~G~~G~is~~~n~~p~~~~~l~~~~~~  225 (293)
T PRK04147        183 KLIYNGFDEMFASGLLAGADGAIGSTYNVNGWRARQIFEAAKA  225 (293)
T ss_pred             CEEEEeehHHHHHHHHcCCCEEEechhhhCHHHHHHHHHHHHC

>TIGR02317 prpB methylisocitrate lyase

Probab=92.81  E-value=1.1  Score=41.57  Aligned_cols=118  Identities=18%  Similarity=0.183  Sum_probs=75.3

Q ss_pred             CCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHh
Q 037779          139 RVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQ  218 (310)
Q Consensus       139 ~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~  218 (310)
                      +..++.++++.-.++.+.+.|.+.+.+.|...+..          +     -++..   +.+    ....-.+.++.+..
T Consensus        13 ~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~~----------l-----G~pD~---g~l----t~~e~~~~~~~I~~   70 (285)
T TIGR02317        13 DILQIPGAINAMAALLAERAGFEAIYLSGAAVAAS----------L-----GLPDL---GIT----TLDEVAEDARRITR   70 (285)
T ss_pred             CcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHh----------C-----CCCCC---CCC----CHHHHHHHHHHHHh
Confidence            46777789999999999999999998875421100          0     11110   000    00112344555566


Q ss_pred             cCCCCEEEEccCCCCCHHH----HHHHHHcCCCEEEEccccc-------cCC---CHHHHHHHHHHHHHcCCCh
Q 037779          219 LGRLPVVHFAAGGVATPAD----AAMMMQLGCDGVFVGSGVF-------KSG---DPVRRARAIVQAVTNYSDP  278 (310)
Q Consensus       219 ~~~iPVv~ia~GGI~t~~d----i~~~~~~GadgV~VGsai~-------~~~---dp~~~~~~~~~~~~~~~~~  278 (310)
                      ..++||++-++.|-+++.+    ++++.++|+.|+.+=--.+       ...   .+..+++.+..+..+..++
T Consensus        71 ~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~  144 (285)
T TIGR02317        71 VTDLPLLVDADTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDE  144 (285)
T ss_pred             ccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCC
Confidence            6789999999999999988    4677789999999955332       111   3456667776666655544

Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.

>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4

Probab=92.76  E-value=0.6  Score=41.49  Aligned_cols=114  Identities=18%  Similarity=0.236  Sum_probs=60.7

Q ss_pred             HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccc----c--------chHHHHHHHHcC
Q 037779           47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARI----G--------HFVEAQILEAIG  114 (310)
Q Consensus        47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i----~--------~~~~~~~~~~aG  114 (310)
                      .++.+...|+++| .++     ...+.........+.+..++..+++|+++-.+-    |        .++.++.+...|
T Consensus        15 ~~~~~~~~~~D~v-ElR-----lD~l~~~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~   88 (224)
T PF01487_consen   15 ELEEAESSGADAV-ELR-----LDYLENDSAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGSEEEYLELLERAIRLG   88 (224)
T ss_dssp             HHHHHHHTTTSEE-EEE-----GGGSTTTSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS-HHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCEE-EEE-----eccccccChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCCHHHHHHHHHHHHHcC
Confidence            3555555599998 442     111211100111456778888889999984331    1        123445566689


Q ss_pred             CCeeeecCCCChhHHHHHHHhcCCCCcEEeecC----CHH--H----HHHHHHhCCCEEEEe
Q 037779          115 VDYVDESEVLTPADEENHINKHNFRVPFVCGCR----NLG--E----SLRRIREGAAMIRTK  166 (310)
Q Consensus       115 ad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~----t~~--e----a~~a~~~Gad~I~v~  166 (310)
                      +++|.+.-...+.........+..+..++++.|    |+.  +    ..++.+.|||++++-
T Consensus        89 ~d~iDiE~~~~~~~~~~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~~~~~~~~gadivKia  150 (224)
T PF01487_consen   89 PDYIDIELDLFPDDLKSRLAARKGGTKIILSYHDFEKTPSWEELIELLEEMQELGADIVKIA  150 (224)
T ss_dssp             SSEEEEEGGCCHHHHHHHHHHHHTTSEEEEEEEESS---THHHHHHHHHHHHHTT-SEEEEE
T ss_pred             CCEEEEEcccchhHHHHHHHHhhCCCeEEEEeccCCCCCCHHHHHHHHHHHHhcCCCeEEEE
Confidence            999974322123333222322335678888877    322  2    345557899999875

2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....

>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]

Probab=92.72  E-value=1.6  Score=40.36  Aligned_cols=120  Identities=19%  Similarity=0.149  Sum_probs=81.1

Q ss_pred             CCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHH
Q 037779          138 FRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTK  217 (310)
Q Consensus       138 ~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~  217 (310)
                      .++.++.++.|+-.++.+.+.|.+.+.+.|......          ++  ..++.-.+.+.          -.+.++.|.
T Consensus        17 ~~~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~s----------lG--~pD~~~~t~~e----------~~~~vrrI~   74 (289)
T COG2513          17 GDPLVLPGAWDAGSALLAERAGFKALYLSGAGVAAS----------LG--LPDLGITTLDE----------VLADARRIT   74 (289)
T ss_pred             CCCEEecCCcCHHHHHHHHHcCCeEEEeccHHHHHh----------cC--CCccccccHHH----------HHHHHHHHH
Confidence            457888899999999999999999998775422110          00  01111111111          234556666


Q ss_pred             hcCCCCEEEEccCCCCCHHHH----HHHHHcCCCEEEEcccccc-------CC---CHHHHHHHHHHHHHcCCChh
Q 037779          218 QLGRLPVVHFAAGGVATPADA----AMMMQLGCDGVFVGSGVFK-------SG---DPVRRARAIVQAVTNYSDPD  279 (310)
Q Consensus       218 ~~~~iPVv~ia~GGI~t~~di----~~~~~~GadgV~VGsai~~-------~~---dp~~~~~~~~~~~~~~~~~~  279 (310)
                      +..++||++-.+.|-+++.++    +++.++|+.|+-+=-....       ..   ++.+++..++.++++.++|+
T Consensus        75 ~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~  150 (289)
T COG2513          75 DAVDLPVLVDIDTGFGEALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPD  150 (289)
T ss_pred             hhcCCceEEeccCCCCcHHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCC
Confidence            667999999999999987665    5666889999987555553       11   46788888888888887653

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=92.51  E-value=0.68  Score=43.10  Aligned_cols=75  Identities=28%  Similarity=0.380  Sum_probs=52.6

Q ss_pred             HHHHHHHHHcCCcEEEecccccc---hhh--------hcC---CCC-CCCChHHHHHHHhhcCcceEeeccccchHHHHH
Q 037779           45 PEQARIAEEAGACAVMALERVPA---DIR--------AQG---GVA-RMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQI  109 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~---d~r--------~~~---G~~-~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~  109 (310)
                      .++++.++++|+++|...|..+.   +.+        .++   |.. .....+.++++++.+++||+....+.+.+.+..
T Consensus       172 ~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~da~~  251 (301)
T PRK07259        172 VEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAEDAIE  251 (301)
T ss_pred             HHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHHHHH
Confidence            47799999999999865551110   111        111   110 122467888999999999999999987788877


Q ss_pred             HHHcCCCeee
Q 037779          110 LEAIGVDYVD  119 (310)
Q Consensus       110 ~~~aGad~v~  119 (310)
                      +..+|||.|.
T Consensus       252 ~l~aGAd~V~  261 (301)
T PRK07259        252 FIMAGASAVQ  261 (301)
T ss_pred             HHHcCCCcee
Confidence            7889999987

>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype

Probab=92.48  E-value=10  Score=36.25  Aligned_cols=181  Identities=9%  Similarity=0.025  Sum_probs=101.1

Q ss_pred             HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC-cceEee-ccccchHHHHHHHHcCCCeeeec-CC
Q 037779           47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT-IPVMAK-ARIGHFVEAQILEAIGVDYVDES-EV  123 (310)
Q Consensus        47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~-lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~  123 (310)
                      +.+++++.+...|.++.  +...+ +.|..  .-...++.+.+... +||.++ |.-.+++.+..+..+|-+.|-++ +.
T Consensus        32 ii~AAEe~~sPvIlq~s--~~~~~-~~g~~--~~~~~~~~~ae~~~~VPValHLDHg~~~e~i~~Ai~~GFtSVMiDgS~  106 (347)
T TIGR01521        32 IMEAADKTDSPVILQAS--RGARS-YAGAP--FLRHLILAAIEEYPHIPVVMHQDHGNSPATCQRAIQLGFTSVMMDGSL  106 (347)
T ss_pred             HHHHHHHhCCCEEEECC--cchhh-hCCHH--HHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcCCCEEeecCcC
Confidence            47777788888875551  11111 12210  01224455555564 999886 33335677888899999998733 21


Q ss_pred             C-------Chh-------HHHHHHHhcCCCC----cEE-----------------------eecCCHHHHHHHH-HhCCC
Q 037779          124 L-------TPA-------DEENHINKHNFRV----PFV-----------------------CGCRNLGESLRRI-REGAA  161 (310)
Q Consensus       124 ~-------~~~-------~~~~~~~~~~~~l----~v~-----------------------~~v~t~~ea~~a~-~~Gad  161 (310)
                      +       +.+       ++++..+..+..+    ..+                       ...++++|+++-. +.|+|
T Consensus       107 l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD  186 (347)
T TIGR01521       107 REDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQLLTDPEEAADFVKKTKVD  186 (347)
T ss_pred             CcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeecccccccccccccCcccccccchhhcCCCHHHHHHHHHHHCcC
Confidence            2       222       2333333222100    000                       0134667777655 46888


Q ss_pred             EEEEe-cCCCCCchHHHHHHHHHhhcceecccc-cCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCC----
Q 037779          162 MIRTK-GEAGTGNIVEAVRHVRSVMGDIRVLRN-MDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVAT----  234 (310)
Q Consensus       162 ~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t----  234 (310)
                      .+.+. |..++..                  +. ..+.       ...-++++++.|.+.. ++|+|.=-++|+..    
T Consensus       187 ~LAvaiGt~HG~Y------------------k~~~~p~-------~~~Ld~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~  241 (347)
T TIGR01521       187 ALAVAIGTSHGAY------------------KFTRKPT-------GEVLAIQRIEEIHARLPDTHLVMHGSSSVPQEWLD  241 (347)
T ss_pred             EEehhcccccCCc------------------CCCCCCC-------hhhcCHHHHHHHHccCCCCCEEEeCCCCCchHhhH
Confidence            77654 3322210                  10 0010       0012578889998877 69987543334310    


Q ss_pred             ----------------HHHHHHHHHcCCCEEEEcccccc
Q 037779          235 ----------------PADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       235 ----------------~~di~~~~~~GadgV~VGsai~~  257 (310)
                                      .+++++++++|..-|=++|.+..
T Consensus       242 ~~~~~~~~~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~  280 (347)
T TIGR01521       242 IINEYGGEIKETYGVPVEEIVEGIKYGVRKVNIDTDLRL  280 (347)
T ss_pred             HHHhhcccccccCCCCHHHHHHHHHCCCeeEEeChHHHH
Confidence                            48999999999999999998765

Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.

>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated

Probab=92.45  E-value=2.1  Score=42.71  Aligned_cols=170  Identities=11%  Similarity=0.144  Sum_probs=91.5

Q ss_pred             HHHHHHhh--cCcceEeecccc---chH-HHHHHH-HcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHH
Q 037779           83 LIKQIKSS--VTIPVMAKARIG---HFV-EAQILE-AIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRR  155 (310)
Q Consensus        83 ~i~~i~~~--~~lPv~~kd~i~---~~~-~~~~~~-~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a  155 (310)
                      .++++.+.  .++|++.....+   +.. .++.++ ..|+|.|..+..+..+.+...+...+.++-+++.++|+.-. ..
T Consensus        77 ~l~~~~~~~~~~~~vI~DaKrgDI~T~~~yA~a~f~~~~aDAiTv~pymG~Dsl~pfl~~~~kgvfvL~~tSNpga~-~~  155 (477)
T PRK05500         77 LLLEVLAAIPPDIPIILDAKHGDLNTSTIFAKTIFEQWQVDAVTLSPYAGQDHVAPFLVYPDKGVFILCHTSNPGAI-AL  155 (477)
T ss_pred             HHHHHHHHhccCCeEEEEecccChHHHHHHHHHHHhhcCCCEEEECCccCccchHHHHhcCCCcEEEEEeCCCcCHH-HH
Confidence            34444433  368898855444   222 344555 48999998655555555555554444567777766665422 11


Q ss_pred             HHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCc-HHHHHHHHhc-CCCCEEEEccCCCC
Q 037779          156 IREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAP-YDLVMQTKQL-GRLPVVHFAAGGVA  233 (310)
Q Consensus       156 ~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~-~~l~~~i~~~-~~iPVv~ia~GGI~  233 (310)
                      ....     ..|   .+...+.++.+...+..       +.-++     -.+.+ .+.++.+++. ++.+++   .=||+
T Consensus       156 Q~~~-----~~g---~~ly~~v~~~~~~~~~~-------~~~g~-----VvGAT~p~~~~~iR~~~p~~~iL---~PGiG  212 (477)
T PRK05500        156 QEYP-----TPE---NPFYLQVVKEAKTWGTP-------EQLGL-----EVGTTNPEVLAKIRQIAPERLIL---LRSIW  212 (477)
T ss_pred             hhcc-----cCC---CcHHHHHHHHHHHhCCC-------CceEE-----EECCCChHHHHHHHHhCCCCEEE---ccccc
Confidence            1110     111   11222333333322210       00000     01222 3445556554 334453   24553


Q ss_pred             C-HHHHHHHHHcCCC------EEEEccccccCCCHHHHHHHHHHHHHcCC
Q 037779          234 T-PADAAMMMQLGCD------GVFVGSGVFKSGDPVRRARAIVQAVTNYS  276 (310)
Q Consensus       234 t-~~di~~~~~~Gad------gV~VGsai~~~~dp~~~~~~~~~~~~~~~  276 (310)
                      . ..++.+++++|.+      -+.+|++|+.++||.+.++++.+.++..+
T Consensus       213 AQGg~~~~~~~~g~~~~~~g~li~v~R~il~a~~~~~~a~~l~~~i~~~~  262 (477)
T PRK05500        213 AEKGNLNQILTAGLNSNGDGLLIPVPQDLLGAANLKEQVKSLREEINQIR  262 (477)
T ss_pred             cCCCCHHHHHHhhcccCcCceEEEeCHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            2 3447777788876      68999999999999999999999988654

>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase

Probab=92.36  E-value=7.2  Score=35.85  Aligned_cols=98  Identities=11%  Similarity=0.044  Sum_probs=48.5

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCC--CCCCCh----HHHHHHHhhcCcceEeeccc----cchHH----
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGV--ARMSDP----QLIKQIKSSVTIPVMAKARI----GHFVE----  106 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~--~~~~~~----~~i~~i~~~~~lPv~~kd~i----~~~~~----  106 (310)
                      .+-|.-.|+.++++|+++|.+--..   .....|.  ...-..    ...+.+++....|+++-|.-    ...++    
T Consensus        21 tayD~~sA~i~~~aG~d~ilvGdSl---gm~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~DmPf~sy~~~e~a~~n   97 (263)
T TIGR00222        21 TAYDYSFAKLFADAGVDVILVGDSL---GMVVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVTDLPFMSYATPEQALKN   97 (263)
T ss_pred             eccCHHHHHHHHHcCCCEEEECccH---hHHhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEeCCCcCCCCCHHHHHHH
Confidence            4566788999999999998432100   0000011  111112    34567777744455443221    11122    


Q ss_pred             H-HHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEE
Q 037779          107 A-QILEAIGVDYVDESEVLTPADEENHINKHNFRVPFV  143 (310)
Q Consensus       107 ~-~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~  143 (310)
                      + +.+.++||+.|.+-......+.++.+.+  .+++++
T Consensus        98 a~rl~~eaGa~aVkiEgg~~~~~~i~~l~~--~gIpV~  133 (263)
T TIGR00222        98 AARVMQETGANAVKLEGGEWLVETVQMLTE--RGVPVV  133 (263)
T ss_pred             HHHHHHHhCCeEEEEcCcHhHHHHHHHHHH--CCCCEE
Confidence            3 3344499999985433223344444443  345555

Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=92.24  E-value=0.63  Score=43.28  Aligned_cols=88  Identities=27%  Similarity=0.360  Sum_probs=56.9

Q ss_pred             ccceeeecCCccccCCC-HHHHHHHHHcCCcEEEeccccc---chhh--------hcCC---CC-CCCChHHHHHHHhhc
Q 037779           28 VGLAQMLRGGVIMDVVT-PEQARIAEEAGACAVMALERVP---ADIR--------AQGG---VA-RMSDPQLIKQIKSSV   91 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~~~-~~~a~~~~~~Ga~~I~~l~~~~---~d~r--------~~~G---~~-~~~~~~~i~~i~~~~   91 (310)
                      .|+..+++.+    ..+ .++++.++++|+++|...|...   .+.+        ..+|   .. .....+.++++++.+
T Consensus       158 ~pv~vKi~~~----~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~  233 (300)
T TIGR01037       158 VPVFAKLSPN----VTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV  233 (300)
T ss_pred             CCEEEECCCC----hhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC
Confidence            3555565531    122 4789999999999996544111   0111        0111   10 000136778888889


Q ss_pred             CcceEeeccccchHHHHHHHHcCCCeee
Q 037779           92 TIPVMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        92 ~lPv~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      ++||+....+.+.+++..+...|||.|.
T Consensus       234 ~ipvi~~GGI~s~~da~~~l~~GAd~V~  261 (300)
T TIGR01037       234 DIPIIGVGGITSFEDALEFLMAGASAVQ  261 (300)
T ss_pred             CCCEEEECCCCCHHHHHHHHHcCCCcee
Confidence            9999999999877888888889999987

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>PRK15452 putative protease; Provisional

Probab=92.14  E-value=3.2  Score=41.05  Aligned_cols=46  Identities=15%  Similarity=0.226  Sum_probs=28.8

Q ss_pred             HHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc
Q 037779          211 DLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF  256 (310)
Q Consensus       211 ~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~  256 (310)
                      .++..+++. .++|+.+-..-.|.+...+..+.++|++.|.+.+-+.
T Consensus        99 G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrELs  145 (443)
T PRK15452         99 GLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELS  145 (443)
T ss_pred             HHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcCC
Confidence            344444443 3566654445566777777777778888887777553

>TIGR00734 hisAF_rel hisA/hisF family protein

Probab=92.14  E-value=0.74  Score=41.11  Aligned_cols=68  Identities=19%  Similarity=0.231  Sum_probs=52.1

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeee
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE  120 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~  120 (310)
                      +..+.+...|+ .+ .+    +|+. ..|...-.+++.++++++.+++|+++...+++.+++..+..+|++.++.
T Consensus       145 ~~~~~~~~~g~-~i-i~----tdI~-~dGt~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~Ga~~viv  212 (221)
T TIGR00734       145 EVRDFLNSFDY-GL-IV----LDIH-SVGTMKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMGVSAVLV  212 (221)
T ss_pred             HHHHHHHhcCC-EE-EE----EECC-ccccCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence            56777788888 55 23    3442 2244444578999999999999999999999888888888899999873

This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.

>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase

Probab=92.12  E-value=9.3  Score=37.19  Aligned_cols=52  Identities=21%  Similarity=0.425  Sum_probs=41.7

Q ss_pred             CCEEEEccCCCCCHHHHHHHHH-cCCCEE-EEccccccCC-CHHHHHHHHHHHHHcCCC
Q 037779          222 LPVVHFAAGGVATPADAAMMMQ-LGCDGV-FVGSGVFKSG-DPVRRARAIVQAVTNYSD  277 (310)
Q Consensus       222 iPVv~ia~GGI~t~~di~~~~~-~GadgV-~VGsai~~~~-dp~~~~~~~~~~~~~~~~  277 (310)
                      .||   .+||++ +..+.++++ +|-|-+ .+|.+++..+ .+..-+++|++++++...
T Consensus       315 ~Pv---~sgG~~-~g~vp~~~~~~G~Dvi~~~GGGi~gHp~G~~aGa~A~rqA~ea~~~  369 (391)
T cd08209         315 FPV---PSAGIH-PGLVPQLLRDFGTDVILNAGGGIHGHPDGAAAGVRAFREAIDAVLA  369 (391)
T ss_pred             eEe---cCCCCC-hhHHHHHHHHhCCceEEecCcceecCCCCchhHHHHHHHHHHHHhc
Confidence            466   589995 999999997 698865 4688899865 578889999999987554

Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.

>PRK09197 fructose-bisphosphate aldolase; Provisional

Probab=92.07  E-value=12  Score=35.92  Aligned_cols=48  Identities=8%  Similarity=0.109  Sum_probs=39.5

Q ss_pred             cHHHHHHHHhcC---------CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          209 PYDLVMQTKQLG---------RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       209 ~~~l~~~i~~~~---------~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                      ++++++.+.+..         ++|+|.=-.+|+ +.++++++.++|..-|=++|.+..
T Consensus       228 d~e~L~~I~~~v~~~~~~~~~~vPLVLHGgSGi-pde~i~~ai~~GI~KINi~T~l~~  284 (350)
T PRK09197        228 RPEILKDSQEYVSKKFGLPAKPFDFVFHGGSGS-TLEEIREAVSYGVVKMNIDTDTQW  284 (350)
T ss_pred             CHHHHHHHHHHHHHhhCCCCCCCCEEEeCCCCC-CHHHHHHHHHCCCeeEEeCcHHHH
Confidence            577888887765         799877666677 469999999999999999998765

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=91.97  E-value=0.64  Score=45.48  Aligned_cols=89  Identities=21%  Similarity=0.352  Sum_probs=59.5

Q ss_pred             cccceeeecCCccccCCC-HHHHHHHHHcCCcEEEecccccc----hh-----------h-hcC---CCC-CCCChHHHH
Q 037779           27 KVGLAQMLRGGVIMDVVT-PEQARIAEEAGACAVMALERVPA----DI-----------R-AQG---GVA-RMSDPQLIK   85 (310)
Q Consensus        27 ~~~~~~~l~~g~i~~~~~-~~~a~~~~~~Ga~~I~~l~~~~~----d~-----------r-~~~---G~~-~~~~~~~i~   85 (310)
                      ..|+.++|+-.    ..+ .++++.++++|+++|+..|....    |.           + .++   |.. +...++.++
T Consensus       168 ~~Pv~vKl~p~----~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~  243 (420)
T PRK08318        168 RLPVIVKLTPN----ITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVA  243 (420)
T ss_pred             CCcEEEEcCCC----cccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHH
Confidence            35777777742    223 58899999999999976661111    11           1 111   221 112356777


Q ss_pred             HHHhhc---CcceEeeccccchHHHHHHHHcCCCeee
Q 037779           86 QIKSSV---TIPVMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        86 ~i~~~~---~lPv~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      ++++.+   ++||+....+.+.+++..+..+||+.|.
T Consensus       244 ~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vq  280 (420)
T PRK08318        244 EIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQ  280 (420)
T ss_pred             HHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChhe
Confidence            888876   7999999888877787777779999987

>PRK12331 oxaloacetate decarboxylase; Provisional

Probab=91.90  E-value=12  Score=37.15  Aligned_cols=169  Identities=16%  Similarity=0.112  Sum_probs=88.1

Q ss_pred             HHHHHHHHcCCcEEEecc--cccchhhhcCCCCCCCChHHHHHHHhh-cCcceEeec----cccc--------hHHHHHH
Q 037779           46 EQARIAEEAGACAVMALE--RVPADIRAQGGVARMSDPQLIKQIKSS-VTIPVMAKA----RIGH--------FVEAQIL  110 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~--~~~~d~r~~~G~~~~~~~~~i~~i~~~-~~lPv~~kd----~i~~--------~~~~~~~  110 (310)
                      ++++.+.++|+..|-.-.  ..+...+ |   ......+.++.+++. .++++..-.    ..++        ..+++.+
T Consensus        30 ~ia~~Ld~~Gv~~IE~~ggatf~~~~~-f---~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~~A  105 (448)
T PRK12331         30 PILEKLDNAGYHSLEMWGGATFDACLR-F---LNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQKS  105 (448)
T ss_pred             HHHHHHHHcCCCEEEecCCccchhhhc-c---CCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHHHH
Confidence            679999999999872210  0010011 1   112346678888776 356665211    1221        1456788


Q ss_pred             HHcCCCeeeecCCC----ChhHHHHHHHhcCCCCcEEee-----cCCHH----HHHHHHHhCCCEEEEecCCCCCchHHH
Q 037779          111 EAIGVDYVDESEVL----TPADEENHINKHNFRVPFVCG-----CRNLG----ESLRRIREGAAMIRTKGEAGTGNIVEA  177 (310)
Q Consensus       111 ~~aGad~v~~~~~~----~~~~~~~~~~~~~~~l~v~~~-----v~t~~----ea~~a~~~Gad~I~v~g~~~~~~~~~~  177 (310)
                      .++|+|.+.+...+    +..+.++.+++++..+.+.++     .++.+    -++.+.++|+|.|.+-=..+..     
T Consensus       106 ~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l-----  180 (448)
T PRK12331        106 VENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIKDMAGIL-----  180 (448)
T ss_pred             HHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCC-----
Confidence            88999998743222    233455555555433222122     22322    3455667788887764111110     


Q ss_pred             HHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEE--ccCCCCCHHHHHHHHHcCCCEEEE
Q 037779          178 VRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHF--AAGGVATPADAAMMMQLGCDGVFV  251 (310)
Q Consensus       178 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~i--a~GGI~t~~di~~~~~~GadgV~V  251 (310)
                                       .+.          ...++++.+++..++|+-+=  -..|.. ..+..+++++||+.|=+
T Consensus       181 -----------------~P~----------~v~~lv~alk~~~~~pi~~H~Hnt~GlA-~AN~laAieaGad~vD~  228 (448)
T PRK12331        181 -----------------TPY----------VAYELVKRIKEAVTVPLEVHTHATSGIA-EMTYLKAIEAGADIIDT  228 (448)
T ss_pred             -----------------CHH----------HHHHHHHHHHHhcCCeEEEEecCCCCcH-HHHHHHHHHcCCCEEEe
Confidence                             110          12445666665545565210  135663 67777888888887654

>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase

Probab=91.85  E-value=9.6  Score=34.85  Aligned_cols=170  Identities=15%  Similarity=0.203  Sum_probs=91.0

Q ss_pred             HHHHHHHHcCCc----EEEeccc----ccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCe
Q 037779           46 EQARIAEEAGAC----AVMALER----VPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDY  117 (310)
Q Consensus        46 ~~a~~~~~~Ga~----~I~~l~~----~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~  117 (310)
                      +.|+.+.+.|+.    .+ .-..    ..|.+..|.|-.+..-++.++++++.+++||+--..  +..+++.+.+. +|.
T Consensus        20 ~~A~~lk~~~~~~~~~~~-fk~sf~KapRTsp~sFqG~G~eeGL~iL~~vk~~~glpvvTeV~--~~~~~~~vae~-vDi   95 (258)
T TIGR01362        20 RVAEKLKELTSKLGVPFI-FKSSFDKANRSSIHSFRGPGLEEGLKILQKVKEEFGVPILTDVH--ESSQCEPVAEV-VDI   95 (258)
T ss_pred             HHHHHHHHHHHhcCCCeE-EecccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCceEEEeC--CHHHHHHHHhh-CcE
Confidence            567777776443    33 1100    123444565543344578899999999999965322  33455555556 788


Q ss_pred             eeecC-CCChhHHHHHHHhcCCCCcEEee---cCCHHHHH----HHHHhCCC-EEEEe-cCCCCCchHHHHHHHHHhhcc
Q 037779          118 VDESE-VLTPADEENHINKHNFRVPFVCG---CRNLGESL----RRIREGAA-MIRTK-GEAGTGNIVEAVRHVRSVMGD  187 (310)
Q Consensus       118 v~~~~-~~~~~~~~~~~~~~~~~l~v~~~---v~t~~ea~----~a~~~Gad-~I~v~-g~~~~~~~~~~~~~~~~~~~~  187 (310)
                      +-+.+ .....++.+.+.+  .+.++.+.   .-|++|..    +....|-+ ++-.. |..++.+              
T Consensus        96 lQIgArn~rn~~LL~a~g~--t~kpV~lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~tf~y~--------------  159 (258)
T TIGR01362        96 IQIPAFLCRQTDLLVAAAK--TGRIVNVKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGTSFGYN--------------  159 (258)
T ss_pred             EEeCchhcchHHHHHHHhc--cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCCcCCC--------------
Confidence            76543 2334566666654  24455542   24566543    33445664 44333 3222111              


Q ss_pred             eecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEcc-------------CCCCC--HHHHHHHHHcCCCEEEEc
Q 037779          188 IRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAA-------------GGVAT--PADAAMMMQLGCDGVFVG  252 (310)
Q Consensus       188 ~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~-------------GGI~t--~~di~~~~~~GadgV~VG  252 (310)
                                       +...+..-+..+++. +.||+.-++             ||...  +.-++..+.+|+||+++=
T Consensus       160 -----------------r~~~D~~~ip~~k~~-~~PVi~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iE  221 (258)
T TIGR01362       160 -----------------NLVVDMRSLPIMREL-GCPVIFDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFME  221 (258)
T ss_pred             -----------------CcccchhhhHHHHhc-CCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEE
Confidence                             112234445555554 689975543             33221  122355667899999987


Q ss_pred             c
Q 037779          253 S  253 (310)
Q Consensus       253 s  253 (310)
                      +
T Consensus       222 v  222 (258)
T TIGR01362       222 T  222 (258)
T ss_pred             e
Confidence            5

In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.

>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B

Probab=91.78  E-value=3.1  Score=37.64  Aligned_cols=118  Identities=17%  Similarity=0.147  Sum_probs=72.0

Q ss_pred             CCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHh
Q 037779          139 RVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQ  218 (310)
Q Consensus       139 ~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~  218 (310)
                      +..++.++++.-.++.+.+.|.+.+.+.|......          +  ..-+...++.+.          -.+.++.+.+
T Consensus         9 ~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s----------~--G~pD~~~lt~~e----------~~~~~~~I~~   66 (238)
T PF13714_consen    9 KPLVLPNVWDALSARLAERAGFDAIATSGAGVAAS----------L--GYPDGGLLTLTE----------MLAAVRRIAR   66 (238)
T ss_dssp             SSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHH----------T--TS-SSS-S-HHH----------HHHHHHHHHH
T ss_pred             CcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHH----------c--CCCCCCCCCHHH----------HHHHHHHHHh
Confidence            57788899999999999999999998764311000          0  000111111111          1344556666


Q ss_pred             cCCCCEEEEccCCCCC-HHH----HHHHHHcCCCEEEEccccc--cCC---CHHHHHHHHHHHHHcCCCh
Q 037779          219 LGRLPVVHFAAGGVAT-PAD----AAMMMQLGCDGVFVGSGVF--KSG---DPVRRARAIVQAVTNYSDP  278 (310)
Q Consensus       219 ~~~iPVv~ia~GGI~t-~~d----i~~~~~~GadgV~VGsai~--~~~---dp~~~~~~~~~~~~~~~~~  278 (310)
                      ..++||++-++.|-++ +.+    ++++.++|+.|+.+=-.-+  ...   .+.+++..++.+..+..++
T Consensus        67 ~~~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~  136 (238)
T PF13714_consen   67 AVSIPVIVDADTGYGNDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDP  136 (238)
T ss_dssp             HSSSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSST
T ss_pred             hhcCcEEEEcccccCchhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCC
Confidence            6789999999999988 555    5677789999999866510  111   3566777777777665554

...

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=91.75  E-value=4.9  Score=36.54  Aligned_cols=111  Identities=21%  Similarity=0.186  Sum_probs=58.5

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCC-CCCChHHHHHHH---hhcCcceEeecc-----cc--c---hHH-HHHH
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVA-RMSDPQLIKQIK---SSVTIPVMAKAR-----IG--H---FVE-AQIL  110 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~-~~~~~~~i~~i~---~~~~lPv~~kd~-----i~--~---~~~-~~~~  110 (310)
                      ..++.+.+.|+++++..        .+.|+. .....+.+++++   ...++|+++...     ++  .   ... ++.+
T Consensus        94 ~~v~~al~~Ga~~v~~~--------~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a  165 (258)
T TIGR01949        94 TTVEDAIRMGADAVSIH--------VNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLG  165 (258)
T ss_pred             eeHHHHHHCCCCEEEEE--------EecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHH
Confidence            45888999999998432        121110 001133444444   446889887422     11  1   112 3566


Q ss_pred             HHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEe--ecC--CHHH----HHHHHHhCCCEEEEe
Q 037779          111 EAIGVDYVDESEVLTPADEENHINKHNFRVPFVC--GCR--NLGE----SLRRIREGAAMIRTK  166 (310)
Q Consensus       111 ~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~--~v~--t~~e----a~~a~~~Gad~I~v~  166 (310)
                      .++|||+|-.+....+ +..+.+.+ ...+++.+  +++  |.++    +..+.+.|++-+.+.
T Consensus       166 ~~~GADyikt~~~~~~-~~l~~~~~-~~~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g  227 (258)
T TIGR01949       166 AELGADIVKTPYTGDI-DSFRDVVK-GCPAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVG  227 (258)
T ss_pred             HHHCCCEEeccCCCCH-HHHHHHHH-hCCCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehh
Confidence            6799999974422122 33333332 12355544  466  5444    445558999866553

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=91.67  E-value=1.9  Score=39.82  Aligned_cols=82  Identities=12%  Similarity=0.134  Sum_probs=57.0

Q ss_pred             hHHHHHHHhhcC--cceEeeccccchHHHHHHHHcCCCeeeecCCCChhHHHHHHHh---cCCCCcEEee--cCCHHHHH
Q 037779           81 PQLIKQIKSSVT--IPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINK---HNFRVPFVCG--CRNLGESL  153 (310)
Q Consensus        81 ~~~i~~i~~~~~--lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~---~~~~l~v~~~--v~t~~ea~  153 (310)
                      .+.++++++...  .++.+  -+.+.+++..+.++|+|.|.. +.++++++.+.++.   ..+++.+.++  + |++.+.
T Consensus       169 ~~~v~~~k~~~p~~~~I~V--Ev~tleea~~A~~~GaDiI~L-Dn~~~e~l~~~v~~~~~~~~~~~ieAsGgI-t~~ni~  244 (273)
T PRK05848        169 KEFIQHARKNIPFTAKIEI--ECESLEEAKNAMNAGADIVMC-DNMSVEEIKEVVAYRNANYPHVLLEASGNI-TLENIN  244 (273)
T ss_pred             HHHHHHHHHhCCCCceEEE--EeCCHHHHHHHHHcCCCEEEE-CCCCHHHHHHHHHHhhccCCCeEEEEECCC-CHHHHH
Confidence            456777776543  44443  234567888888999999864 33477777776654   1234555554  5 899999


Q ss_pred             HHHHhCCCEEEEe
Q 037779          154 RRIREGAAMIRTK  166 (310)
Q Consensus       154 ~a~~~Gad~I~v~  166 (310)
                      ...+.|+|+|.+.
T Consensus       245 ~ya~~GvD~IsvG  257 (273)
T PRK05848        245 AYAKSGVDAISSG  257 (273)
T ss_pred             HHHHcCCCEEEeC
Confidence            9999999999985

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=91.65  E-value=3.5  Score=36.75  Aligned_cols=111  Identities=19%  Similarity=0.158  Sum_probs=60.1

Q ss_pred             HHHHHHHHcCCcEE-EecccccchhhhcCCCCCCCChHHHHHHH---hhcCcceEeeccc--------cch---HH-HHH
Q 037779           46 EQARIAEEAGACAV-MALERVPADIRAQGGVARMSDPQLIKQIK---SSVTIPVMAKARI--------GHF---VE-AQI  109 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I-~~l~~~~~d~r~~~G~~~~~~~~~i~~i~---~~~~lPv~~kd~i--------~~~---~~-~~~  109 (310)
                      ..++.+.+.|++++ .+++....+..        ...+.+++++   ...++|+++.+..        ...   .. ++.
T Consensus        80 ~~v~~a~~~Ga~~v~~~~~~~~~~~~--------~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~  151 (235)
T cd00958          80 ASVEDAVRLGADAVGVTVYVGSEEER--------EMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARI  151 (235)
T ss_pred             cCHHHHHHCCCCEEEEEEecCCchHH--------HHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHH
Confidence            45888889999987 22321000000        0123444444   4568999986654        111   22 345


Q ss_pred             HHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEe-e---cCCHHH----HHHHHHhCCCEEEEe
Q 037779          110 LEAIGVDYVDESEVLTPADEENHINKHNFRVPFVC-G---CRNLGE----SLRRIREGAAMIRTK  166 (310)
Q Consensus       110 ~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~-~---v~t~~e----a~~a~~~Gad~I~v~  166 (310)
                      +.++|||+|-......+ +..+.+.+ ...+++++ +   ..|.++    +..+.+.|++-+.+.
T Consensus       152 a~~~GaD~Ik~~~~~~~-~~~~~i~~-~~~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg  214 (235)
T cd00958         152 GAELGADIVKTKYTGDA-ESFKEVVE-GCPVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVG  214 (235)
T ss_pred             HHHHCCCEEEecCCCCH-HHHHHHHh-cCCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence            77799999974322122 33333433 23355544 2   245554    677788999977664

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=91.64  E-value=0.94  Score=43.07  Aligned_cols=88  Identities=26%  Similarity=0.306  Sum_probs=62.2

Q ss_pred             cccceeeecCCccccCC-CHHHHHHHHHcCCcEEEecccccchhhhcCCC-CCCCChHHHHHHHhhcC-cceEeeccccc
Q 037779           27 KVGLAQMLRGGVIMDVV-TPEQARIAEEAGACAVMALERVPADIRAQGGV-ARMSDPQLIKQIKSSVT-IPVMAKARIGH  103 (310)
Q Consensus        27 ~~~~~~~l~~g~i~~~~-~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~-~~~~~~~~i~~i~~~~~-lPv~~kd~i~~  103 (310)
                      .+|+..+.|-+.  +.. +.++++..+++|++.+.+..+.+. .   .|. .-..+.+.++.+++... +||+++..|.+
T Consensus       141 ~~pVs~KIRI~~--d~~kTvd~ak~~e~aG~~~ltVHGRtr~-~---kg~~~~pad~~~i~~v~~~~~~ipviaNGnI~~  214 (358)
T KOG2335|consen  141 NVPVSVKIRIFV--DLEKTVDYAKMLEDAGVSLLTVHGRTRE-Q---KGLKTGPADWEAIKAVRENVPDIPVIANGNILS  214 (358)
T ss_pred             CCCeEEEEEecC--cHHHHHHHHHHHHhCCCcEEEEecccHH-h---cCCCCCCcCHHHHHHHHHhCcCCcEEeeCCcCc
Confidence            355666777652  222 268999999999999844323221 1   121 22456888999999887 99999999987


Q ss_pred             hHHHHHHHH-cCCCeeee
Q 037779          104 FVEAQILEA-IGVDYVDE  120 (310)
Q Consensus       104 ~~~~~~~~~-aGad~v~~  120 (310)
                      ..++..+.. .|||+|-.
T Consensus       215 ~~d~~~~~~~tG~dGVM~  232 (358)
T KOG2335|consen  215 LEDVERCLKYTGADGVMS  232 (358)
T ss_pred             HHHHHHHHHHhCCceEEe
Confidence            778877777 99999974

>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=91.64  E-value=1.7  Score=40.64  Aligned_cols=73  Identities=18%  Similarity=0.289  Sum_probs=47.2

Q ss_pred             HHHHHHHhc--CCCCEEEEccCCCCCHHHH---HHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChhhHHhh
Q 037779          211 DLVMQTKQL--GRLPVVHFAAGGVATPADA---AMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEV  284 (310)
Q Consensus       211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di---~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~~~~~~  284 (310)
                      ++++.+.+.  .++||++ -.|+-+|.+-+   +.+.+.|+||+++-.-.|..++.....+-|....++-.-|-.++.+
T Consensus        61 ~v~~~~v~~~~grvpvia-G~g~~~t~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~lPvilYN~  138 (299)
T COG0329          61 EVLEAVVEAVGGRVPVIA-GVGSNSTAEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVDLPVILYNI  138 (299)
T ss_pred             HHHHHHHHHHCCCCcEEE-ecCCCcHHHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcCCCEEEEeC
Confidence            344555553  3689852 34554433333   3444679999999999999998877777777776665555444443

>PRK15492 triosephosphate isomerase; Provisional

Probab=91.64  E-value=2.3  Score=38.97  Aligned_cols=35  Identities=29%  Similarity=0.638  Sum_probs=29.3

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccC
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKS  258 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~  258 (310)
                      +++|  +..|+| +++++.+++.. ..||++||++=...
T Consensus       212 ~irI--LYGGSV-~~~N~~~l~~~~diDG~LvG~aSl~~  247 (260)
T PRK15492        212 DIPV--FYGGSV-NAENANELFGQPHIDGLFIGRSAWDA  247 (260)
T ss_pred             ceeE--EEcCcc-CHHHHHHHhcCCCCCEEEeehhhcCH
Confidence            4778  679999 59999999865 79999999987763

>PRK05265 pyridoxine 5'-phosphate synthase; Provisional

Probab=91.61  E-value=10  Score=34.29  Aligned_cols=184  Identities=16%  Similarity=0.147  Sum_probs=110.3

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-ecCC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEV  123 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~  123 (310)
                      .+.|..++++||++|..- + ..|.|.-       ..+++..+++.++.|+-.-... ..+..+++.+.-.+.+. .++.
T Consensus        27 v~aA~~a~~aGAdgITvH-l-ReDrRHI-------~d~Dv~~L~~~~~~~lNlE~a~-~~em~~ia~~~kP~~vtLVPE~   96 (239)
T PRK05265         27 VRAALIAEQAGADGITVH-L-REDRRHI-------RDRDVRLLRETLKTELNLEMAA-TEEMLDIALEVKPHQVTLVPEK   96 (239)
T ss_pred             HHHHHHHHHcCCCEEEec-C-CCCcccC-------CHHHHHHHHHhcCCCEEeccCC-CHHHHHHHHHCCCCEEEECCCC
Confidence            388999999999998432 1 1244443       3788999998888777332111 23566788888888775 3211


Q ss_pred             ---------CC-------hhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHHHHHhhc
Q 037779          124 ---------LT-------PADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRHVRSVMG  186 (310)
Q Consensus       124 ---------~~-------~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~  186 (310)
                               +.       ...+++.++..+..+-++++ .++++++.+.+.|||.|=.+ |+ |..    +         
T Consensus        97 r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFid-P~~~qi~~A~~~GAd~VELhTG~-yA~----a---------  161 (239)
T PRK05265         97 REELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFID-PDPEQIEAAAEVGADRIELHTGP-YAD----A---------  161 (239)
T ss_pred             CCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeC-CCHHHHHHHHHhCcCEEEEechh-hhc----C---------
Confidence                     11       12445555555555667776 47788899999999999776 32 110    0         


Q ss_pred             ceecccccCchhHHhhhccCCCcHHH--HHHH---HhcCCCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccCC-
Q 037779          187 DIRVLRNMDDDEVFTFAKNIAAPYDL--VMQT---KQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSG-  259 (310)
Q Consensus       187 ~~~~l~~~~~d~~~~~~~~~~~~~~l--~~~i---~~~~~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~~-  259 (310)
                          +..             ....++  +...   .....+-|  =|.-|+ +.+++..+.+. +..-+-+|-+|+.-- 
T Consensus       162 ----~~~-------------~~~~el~~~~~aa~~a~~lGL~V--nAGHgL-ny~Nv~~i~~ip~i~EvnIGHsiia~Al  221 (239)
T PRK05265        162 ----KTE-------------AEAAELERIAKAAKLAASLGLGV--NAGHGL-NYHNVKPIAAIPGIEELNIGHAIIARAL  221 (239)
T ss_pred             ----CCc-------------chHHHHHHHHHHHHHHHHcCCEE--ecCCCC-CHHhHHHHhhCCCCeEEccCHHHHHHHH
Confidence                000             001111  1111   11134555  678899 59999998764 889999998887521 


Q ss_pred             --CHHHHHHHHHHHHH
Q 037779          260 --DPVRRARAIVQAVT  273 (310)
Q Consensus       260 --dp~~~~~~~~~~~~  273 (310)
                        -....+++|++.+.
T Consensus       222 ~~Gl~~aV~~m~~~i~  237 (239)
T PRK05265        222 FVGLEEAVREMKRLMD  237 (239)
T ss_pred             HHhHHHHHHHHHHHHh
Confidence              12345555555543

>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=91.58  E-value=11  Score=34.63  Aligned_cols=115  Identities=12%  Similarity=0.081  Sum_probs=64.3

Q ss_pred             HHHHHHHHcCCcEEE--ecc---c--ccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779           46 EQARIAEEAGACAVM--ALE---R--VPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYV  118 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~--~l~---~--~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v  118 (310)
                      +.|+.+.+.|+....  ...   .  ..|.+..|.|-.+..-++.++++++.+++|++--  +.+..+++...+. +|.+
T Consensus        28 ~~A~~lk~~~~~~~~~~~fK~sf~KapRTSp~sFqG~G~eeGL~~L~~vk~~~GlpvvTe--V~~~~~~~~v~~~-~Dil  104 (264)
T PRK05198         28 RIAEHLKEITDKLGIPYVFKASFDKANRSSIHSFRGPGLEEGLKILQEVKETFGVPVLTD--VHEPEQAAPVAEV-VDVL  104 (264)
T ss_pred             HHHHHHHHHHHhcCCCeEEeccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHCCceEEE--eCCHHHHHHHHhh-CcEE
Confidence            567777776543210  111   0  1244556665443456788999999999999653  2233566666666 7887


Q ss_pred             eecC-CCChhHHHHHHHhcCCCCcEEee---cCCHHHHHH----HHHhCCC-EEEE
Q 037779          119 DESE-VLTPADEENHINKHNFRVPFVCG---CRNLGESLR----RIREGAA-MIRT  165 (310)
Q Consensus       119 ~~~~-~~~~~~~~~~~~~~~~~l~v~~~---v~t~~ea~~----a~~~Gad-~I~v  165 (310)
                      -+.+ .....++.+.+.+  .+.++.+.   .-|++|..-    ....|-. ++-.
T Consensus       105 QIgArn~rn~~LL~a~g~--t~kpV~lKrG~~~t~~e~~~aaeyi~~~Gn~~vilc  158 (264)
T PRK05198        105 QIPAFLCRQTDLLVAAAK--TGKVVNIKKGQFLAPWDMKNVVDKVREAGNDKIILC  158 (264)
T ss_pred             EECchhcchHHHHHHHhc--cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEE
Confidence            6543 2334566666654  34555543   245665443    3345654 4433

>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]

Probab=91.53  E-value=0.95  Score=37.64  Aligned_cols=56  Identities=21%  Similarity=0.340  Sum_probs=35.4

Q ss_pred             HHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          211 DLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      ++++.+++.  .++.|+   .||+-.++|...+.++|++++.-     -..+..+.+..++..+..
T Consensus        82 ~lve~lre~G~~~i~v~---~GGvip~~d~~~l~~~G~~~if~-----pgt~~~~~~~~v~~~l~~  139 (143)
T COG2185          82 GLVEALREAGVEDILVV---VGGVIPPGDYQELKEMGVDRIFG-----PGTPIEEALSDLLTRLGA  139 (143)
T ss_pred             HHHHHHHHhCCcceEEe---ecCccCchhHHHHHHhCcceeeC-----CCCCHHHHHHHHHHHHHh
Confidence            345555554  245543   48888899999999999998742     122445555556555543

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=91.44  E-value=0.95  Score=42.84  Aligned_cols=88  Identities=18%  Similarity=0.124  Sum_probs=59.0

Q ss_pred             ccceeeecCCccccCCC-HHHHHHHHHcCCcEEEeccccc-chhhh----------cCCCC-CCCChHHHHHHHhhcCcc
Q 037779           28 VGLAQMLRGGVIMDVVT-PEQARIAEEAGACAVMALERVP-ADIRA----------QGGVA-RMSDPQLIKQIKSSVTIP   94 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~~~-~~~a~~~~~~Ga~~I~~l~~~~-~d~r~----------~~G~~-~~~~~~~i~~i~~~~~lP   94 (310)
                      .|+.++|+...    .+ .+.++.+.++|+++|...|+.+ .+++.          ++|.. +...++.++++++.+++|
T Consensus       164 iPv~vKl~p~~----~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~~ip  239 (325)
T cd04739         164 IPVAVKLSPFF----SALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRVKAS  239 (325)
T ss_pred             CCEEEEcCCCc----cCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHcccCCC
Confidence            57777776521    23 5789999999999997666221 01110          01111 112245677888888999


Q ss_pred             eEeeccccchHHHHHHHHcCCCeee
Q 037779           95 VMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        95 v~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      |+....+.+.+++.....+||+.|.
T Consensus       240 Iig~GGI~s~~Da~e~l~aGA~~Vq  264 (325)
T cd04739         240 LAASGGVHDAEDVVKYLLAGADVVM  264 (325)
T ss_pred             EEEECCCCCHHHHHHHHHcCCCeeE
Confidence            9999988877777767779999997

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=91.29  E-value=3  Score=37.00  Aligned_cols=72  Identities=32%  Similarity=0.380  Sum_probs=50.6

Q ss_pred             CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCC---CCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee
Q 037779           43 VTPEQARIAEEAGACAVMALERVPADIRAQGGVAR---MSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        43 ~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~---~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      .+.+.++.+.+.|++.|....      ...+|...   ....+.++++++.+++|+++...+...+.+..+.+.|+|+|.
T Consensus       110 ~~~~~~~~~~~~gad~i~~~~------~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~l~~GadgV~  183 (236)
T cd04730         110 TSVEEARKAEAAGADALVAQG------AEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAALALGADGVQ  183 (236)
T ss_pred             CCHHHHHHHHHcCCCEEEEeC------cCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHHHHcCCcEEE
Confidence            345778888889999874321      11112211   123668889998889999998888766677777789999997


Q ss_pred             e
Q 037779          120 E  120 (310)
Q Consensus       120 ~  120 (310)
                      .
T Consensus       184 v  184 (236)
T cd04730         184 M  184 (236)
T ss_pred             E
Confidence            3

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid)

Probab=91.28  E-value=12  Score=34.55  Aligned_cols=67  Identities=15%  Similarity=0.117  Sum_probs=39.0

Q ss_pred             HHHHHHHHc-CCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCC
Q 037779           46 EQARIAEEA-GACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGV  115 (310)
Q Consensus        46 ~~a~~~~~~-Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGa  115 (310)
                      +.++.+.+. |++++....       ..+-...+...   +.++.+.+.+  ++||++...-..    .+.++.+.++||
T Consensus        25 ~~i~~l~~~~Gv~gi~~~G-------stGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~Ga   97 (288)
T cd00954          25 AIVDYLIEKQGVDGLYVNG-------STGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEELGY   97 (288)
T ss_pred             HHHHHHHhcCCCCEEEECc-------CCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHcCC
Confidence            678999999 999984431       01101112222   2334444433  478888644322    245677788999


Q ss_pred             Ceee
Q 037779          116 DYVD  119 (310)
Q Consensus       116 d~v~  119 (310)
                      |++.
T Consensus        98 d~v~  101 (288)
T cd00954          98 DAIS  101 (288)
T ss_pred             CEEE
Confidence            9987

It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.

>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4

Probab=91.17  E-value=1.9  Score=39.46  Aligned_cols=84  Identities=14%  Similarity=0.278  Sum_probs=52.8

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcC--------CChhh
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY--------SDPDV  280 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~--------~~~~~  280 (310)
                      +++.+..+++..++|+..  -==|-++-++.+...+|||+|++--+++..    ..+++|.+..+..        +++.-
T Consensus        97 s~~dL~~v~~~~~~PvL~--KDFIid~~QI~eA~~~GADaVLLI~~~L~~----~~l~~l~~~a~~lGle~lVEVh~~~E  170 (254)
T PF00218_consen   97 SLEDLRAVRKAVDLPVLR--KDFIIDPYQIYEARAAGADAVLLIAAILSD----DQLEELLELAHSLGLEALVEVHNEEE  170 (254)
T ss_dssp             HHHHHHHHHHHSSS-EEE--ES---SHHHHHHHHHTT-SEEEEEGGGSGH----HHHHHHHHHHHHTT-EEEEEESSHHH
T ss_pred             CHHHHHHHHHHhCCCccc--ccCCCCHHHHHHHHHcCCCEeehhHHhCCH----HHHHHHHHHHHHcCCCeEEEECCHHH
Confidence            456667777767788853  222337999999999999999999999873    3456666655442        23333


Q ss_pred             HHhhhhccCCceecccccc
Q 037779          281 LAEVSCGLGEAMVGIDLND  299 (310)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~  299 (310)
                      +.. +-..|..+.||.-.|
T Consensus       171 l~~-al~~~a~iiGINnRd  188 (254)
T PF00218_consen  171 LER-ALEAGADIIGINNRD  188 (254)
T ss_dssp             HHH-HHHTT-SEEEEESBC
T ss_pred             HHH-HHHcCCCEEEEeCcc
Confidence            333 336689999986444

1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....

>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]

Probab=91.14  E-value=4.7  Score=38.60  Aligned_cols=46  Identities=20%  Similarity=0.291  Sum_probs=32.0

Q ss_pred             HHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc
Q 037779          211 DLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF  256 (310)
Q Consensus       211 ~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~  256 (310)
                      -++..+++. +++|+.+-.-.-+.|++.+.-+.+.|+..+++.+.+-
T Consensus       102 g~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEls  148 (347)
T COG0826         102 GLIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRVVLPRELS  148 (347)
T ss_pred             HHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccCC
Confidence            344555543 4677766666778888888888888888777776543

>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=91.09  E-value=12  Score=34.34  Aligned_cols=177  Identities=14%  Similarity=0.156  Sum_probs=100.4

Q ss_pred             HHHHHHHHcCCcEEEec-ccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-CC
Q 037779           46 EQARIAEEAGACAVMAL-ERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-EV  123 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l-~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~~  123 (310)
                      ++|+.+.+.|+..+-.- ..-.|.+..|.|.. ......++++++..++|++.-.+  +...++.+.+. +|.+-+. ..
T Consensus        45 ~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g-~~gl~~l~~~~~~~Gl~~~te~~--d~~~~~~l~~~-vd~~kIga~~  120 (266)
T PRK13398         45 KVAEKLKELGVHMLRGGAFKPRTSPYSFQGLG-EEGLKILKEVGDKYNLPVVTEVM--DTRDVEEVADY-ADMLQIGSRN  120 (266)
T ss_pred             HHHHHHHHcCCCEEEEeeecCCCCCCccCCcH-HHHHHHHHHHHHHcCCCEEEeeC--ChhhHHHHHHh-CCEEEECccc
Confidence            77999999999865211 00001111222211 22345667777788999976433  22456666666 7877644 33


Q ss_pred             CChhHHHHHHHhcCCCCcEEeecC---CHHHHHHHHH----hCC-CEEEEe-cC-CCCCchHHHHHHHHHhhcceecccc
Q 037779          124 LTPADEENHINKHNFRVPFVCGCR---NLGESLRRIR----EGA-AMIRTK-GE-AGTGNIVEAVRHVRSVMGDIRVLRN  193 (310)
Q Consensus       124 ~~~~~~~~~~~~~~~~l~v~~~v~---t~~ea~~a~~----~Ga-d~I~v~-g~-~~~~~~~~~~~~~~~~~~~~~~l~~  193 (310)
                      ....++.+.+.+  .+.++++...   +.+|...+.+    .|. +++-.. |. .+++                    +
T Consensus       121 ~~n~~LL~~~a~--~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~--------------------Y  178 (266)
T PRK13398        121 MQNFELLKEVGK--TKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFET--------------------Y  178 (266)
T ss_pred             ccCHHHHHHHhc--CCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCC--------------------C
Confidence            344556666654  5677777643   7777766553    355 344333 21 0110                    0


Q ss_pred             cCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCC----HHHHHHHHHcCCCEEEEccccccC
Q 037779          194 MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVAT----PADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       194 ~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t----~~di~~~~~~GadgV~VGsai~~~  258 (310)
                       ..         ...+...+..+++...+||++.++=+++.    +.....++.+||+|+++=+-+.-.
T Consensus       179 -~~---------~~vdl~~i~~lk~~~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~pd  237 (266)
T PRK13398        179 -TR---------NTLDLAAVAVIKELSHLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPEPE  237 (266)
T ss_pred             -CH---------HHHHHHHHHHHHhccCCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCCcc
Confidence             00         01234555666665578986434555543    555677778999999998877653

>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF

Probab=91.02  E-value=1.4  Score=38.87  Aligned_cols=95  Identities=22%  Similarity=0.370  Sum_probs=51.7

Q ss_pred             eecCCHHHHHHHHHhCCCEEEEecC-CCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCC
Q 037779          144 CGCRNLGESLRRIREGAAMIRTKGE-AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRL  222 (310)
Q Consensus       144 ~~v~t~~ea~~a~~~Gad~I~v~g~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~i  222 (310)
                      +.+.|++++..|.+.|||=|-+... ..+                                 ++.++..+++.+.+..++
T Consensus         5 vcv~s~~~a~~A~~~GAdRiELc~~l~~G---------------------------------GlTPS~g~i~~~~~~~~i   51 (201)
T PF03932_consen    5 VCVESLEDALAAEAGGADRIELCSNLEVG---------------------------------GLTPSLGLIRQAREAVDI   51 (201)
T ss_dssp             EEESSHHHHHHHHHTT-SEEEEEBTGGGT----------------------------------B---HHHHHHHHHHTTS
T ss_pred             EEeCCHHHHHHHHHcCCCEEEECCCccCC---------------------------------CcCcCHHHHHHHHhhcCC
Confidence            4567899999999999998765421 111                                 234456677777766667


Q ss_pred             CEEEEc--cCC--CCCH-------HHHHHHHHcCCCEEEEccccccCCC-HHHHHHHHHHHH
Q 037779          223 PVVHFA--AGG--VATP-------ADAAMMMQLGCDGVFVGSGVFKSGD-PVRRARAIVQAV  272 (310)
Q Consensus       223 PVv~ia--~GG--I~t~-------~di~~~~~~GadgV~VGsai~~~~d-p~~~~~~~~~~~  272 (310)
                      ||.++.  -+|  +.|.       ++++.+.++|+|||++|- +..... -.+.++.+.+..
T Consensus        52 pv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~-L~~dg~iD~~~~~~Li~~a  112 (201)
T PF03932_consen   52 PVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGFVFGA-LTEDGEIDEEALEELIEAA  112 (201)
T ss_dssp             EEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE---BETTSSB-HHHHHHHHHHH
T ss_pred             ceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEEEe-ECCCCCcCHHHHHHHHHhc
Confidence            764332  233  2233       456777789999999985 333222 234555555554

A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.

>PLN02424 ketopantoate hydroxymethyltransferase

Probab=91.00  E-value=14  Score=35.11  Aligned_cols=98  Identities=11%  Similarity=0.056  Sum_probs=51.8

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhcCC--CCCCCChH----HHHHHHhhcCcceEeeccc-c----chHH---
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGG--VARMSDPQ----LIKQIKSSVTIPVMAKARI-G----HFVE---  106 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G--~~~~~~~~----~i~~i~~~~~lPv~~kd~i-~----~~~~---  106 (310)
                      .+-|+..|+.+.++|++.|.+--..   .....|  +...-.++    ..+.+++....|+++-|.- +    ..++   
T Consensus        41 TAyD~~sA~i~d~aGvD~ILVGDSl---gmv~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av~  117 (332)
T PLN02424         41 TAYDYPSAVHVDSAGIDVCLVGDSA---AMVVHGHDTTLPITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAVE  117 (332)
T ss_pred             ecCCHHHHHHHHHcCCCEEEECCcH---HHHhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHHH
Confidence            4566788999999999998432100   000011  11111222    3456677778888886543 2    1222   


Q ss_pred             -HHHH-HHcCCCeeeecCC-CChhHHHHHHHhcCCCCcEE
Q 037779          107 -AQIL-EAIGVDYVDESEV-LTPADEENHINKHNFRVPFV  143 (310)
Q Consensus       107 -~~~~-~~aGad~v~~~~~-~~~~~~~~~~~~~~~~l~v~  143 (310)
                       +..+ .+.||+.|-+-.. ....+.++.+..  .+++++
T Consensus       118 nA~rl~~eaGa~aVKlEGg~~~~~~~I~~l~~--~GIPV~  155 (332)
T PLN02424        118 SAVRMLKEGGMDAVKLEGGSPSRVTAAKAIVE--AGIAVM  155 (332)
T ss_pred             HHHHHHHHhCCcEEEECCCcHHHHHHHHHHHH--cCCCEE
Confidence             3334 5699999974322 122344444433  356655

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=90.98  E-value=0.55  Score=44.80  Aligned_cols=91  Identities=19%  Similarity=0.243  Sum_probs=59.2

Q ss_pred             ccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccc--hhh------hcCC---CC-CCCChHHHHHHHhhc--Cc
Q 037779           28 VGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPA--DIR------AQGG---VA-RMSDPQLIKQIKSSV--TI   93 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~--d~r------~~~G---~~-~~~~~~~i~~i~~~~--~l   93 (310)
                      .|+.++|+-+. ......++++.++++|+++|...|+...  +..      .++|   .. .....+.++++++.+  ++
T Consensus       212 ~PV~vKlsp~~-~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~i  290 (344)
T PRK05286        212 VPLLVKIAPDL-SDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRL  290 (344)
T ss_pred             CceEEEeCCCC-CHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCC
Confidence            57777777431 1111247899999999999976663210  010      0111   10 011345778888888  79


Q ss_pred             ceEeeccccchHHHHHHHHcCCCeee
Q 037779           94 PVMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        94 Pv~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      ||+....+.+.+++..+..+|||.|.
T Consensus       291 pIig~GGI~s~eda~e~l~aGAd~V~  316 (344)
T PRK05286        291 PIIGVGGIDSAEDAYEKIRAGASLVQ  316 (344)
T ss_pred             CEEEECCCCCHHHHHHHHHcCCCHHH
Confidence            99999888887888777779999986

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2

Probab=90.96  E-value=2.9  Score=39.67  Aligned_cols=118  Identities=25%  Similarity=0.303  Sum_probs=71.7

Q ss_pred             HHHHHHHHcCCcEEEecc-c---------ccc---hhhhcCCCCCCCC----hHHHHHHHhhc--CcceEeecc------
Q 037779           46 EQARIAEEAGACAVMALE-R---------VPA---DIRAQGGVARMSD----PQLIKQIKSSV--TIPVMAKAR------  100 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~---------~~~---d~r~~~G~~~~~~----~~~i~~i~~~~--~lPv~~kd~------  100 (310)
                      +.|+.+.++|+|+| .+| -         .|.   --..++|+. .+-    .+.+++||+.+  ++||.++..      
T Consensus       153 ~aA~ra~~aGfDgV-eih~a~gyLl~qFlsp~~N~R~D~yGGsl-enR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~  230 (338)
T cd04733         153 HAARLAQEAGFDGV-QIHAAHGYLLSQFLSPLTNKRTDEYGGSL-ENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQR  230 (338)
T ss_pred             HHHHHHHHcCCCEE-EEchhhhhHHHHhcCCcCCCCCccCCCCH-HHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCC
Confidence            45889999999998 454 0         111   011345661 111    23567888887  478887642      


Q ss_pred             cc-ch----HHHHHHHHcCCCeeeecCC-----CC----------h----hHHHHHHHhcCCCCcEEe--ecCCHHHHHH
Q 037779          101 IG-HF----VEAQILEAIGVDYVDESEV-----LT----------P----ADEENHINKHNFRVPFVC--GCRNLGESLR  154 (310)
Q Consensus       101 i~-~~----~~~~~~~~aGad~v~~~~~-----~~----------~----~~~~~~~~~~~~~l~v~~--~v~t~~ea~~  154 (310)
                      .+ +.    +.++.+.++|+|.+.++..     ..          +    .+..+.++++ .++++++  .+.+++++++
T Consensus       231 ~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-v~iPVi~~G~i~t~~~a~~  309 (338)
T cd04733         231 GGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKV-TKTPLMVTGGFRTRAAMEQ  309 (338)
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHH-cCCCEEEeCCCCCHHHHHH
Confidence            11 11    3456777899999873211     00          0    1334445542 4566666  3789999999


Q ss_pred             HHHhC-CCEEEEe
Q 037779          155 RIREG-AAMIRTK  166 (310)
Q Consensus       155 a~~~G-ad~I~v~  166 (310)
                      +++.| +|+|.+.
T Consensus       310 ~l~~g~aD~V~lg  322 (338)
T cd04733         310 ALASGAVDGIGLA  322 (338)
T ss_pred             HHHcCCCCeeeeC
Confidence            99876 7999885

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK11613 folP dihydropteroate synthase; Provisional

Probab=90.94  E-value=13  Score=34.46  Aligned_cols=84  Identities=12%  Similarity=0.129  Sum_probs=48.1

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCC-------hHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSD-------PQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYV  118 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~-------~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v  118 (310)
                      +.|+.+.+.||+.| +++..+|-+    |+.....       ...++.+++..++|+++-.+  +.+.++.+.++||+.|
T Consensus        42 ~~a~~~~~~GAdII-DIGgeSTrP----g~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISIDT~--~~~va~~AL~~GadiI  114 (282)
T PRK11613         42 KHANLMINAGATII-DVGGESTRP----GAAEVSVEEELDRVIPVVEAIAQRFEVWISVDTS--KPEVIRESAKAGAHII  114 (282)
T ss_pred             HHHHHHHHCCCcEE-EECCCCCCC----CCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEECC--CHHHHHHHHHcCCCEE
Confidence            67999999999998 775222211    1111111       11344555555788876644  3366788888999988


Q ss_pred             e-ecCCCChhHHHHHHHhcC
Q 037779          119 D-ESEVLTPADEENHINKHN  137 (310)
Q Consensus       119 ~-~~~~~~~~~~~~~~~~~~  137 (310)
                      - ++. +..++..+.+.+++
T Consensus       115 NDI~g-~~d~~~~~~~a~~~  133 (282)
T PRK11613        115 NDIRS-LSEPGALEAAAETG  133 (282)
T ss_pred             EECCC-CCCHHHHHHHHHcC
Confidence            5 332 23334445554443

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=90.93  E-value=0.47  Score=45.65  Aligned_cols=44  Identities=27%  Similarity=0.458  Sum_probs=39.2

Q ss_pred             CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccc
Q 037779          208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG  254 (310)
Q Consensus       208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsa  254 (310)
                      .+|+-++++++..++||++   .||.+++++.++.++|+|+|.|...
T Consensus       211 ~tW~di~wlr~~~~~Piiv---KgV~~~~dA~~a~~~Gvd~I~Vsnh  254 (367)
T PLN02493        211 LSWKDVQWLQTITKLPILV---KGVLTGEDARIAIQAGAAGIIVSNH  254 (367)
T ss_pred             CCHHHHHHHHhccCCCEEe---ecCCCHHHHHHHHHcCCCEEEECCC
Confidence            4688899999888899974   9999999999999999999999764

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=90.88  E-value=2.4  Score=38.75  Aligned_cols=81  Identities=15%  Similarity=0.281  Sum_probs=55.9

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCC--------hhh
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSD--------PDV  280 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~--------~~~  280 (310)
                      ..+.+..+++..++||+. -.- |..+.++.++.++|||+|.+.-.+...    ..++++.+..+...-        ..-
T Consensus        99 ~~~~l~~v~~~v~iPvl~-kdf-i~~~~qi~~a~~~GAD~VlLi~~~l~~----~~l~~li~~a~~lGl~~lvevh~~~E  172 (260)
T PRK00278         99 SLEYLRAARAAVSLPVLR-KDF-IIDPYQIYEARAAGADAILLIVAALDD----EQLKELLDYAHSLGLDVLVEVHDEEE  172 (260)
T ss_pred             CHHHHHHHHHhcCCCEEe-eee-cCCHHHHHHHHHcCCCEEEEEeccCCH----HHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence            466677777777899963 344 556889999999999999999888642    456666666554322        222


Q ss_pred             HHhhhhccCCceeccc
Q 037779          281 LAEVSCGLGEAMVGID  296 (310)
Q Consensus       281 ~~~~~~~~~~~~~~~~  296 (310)
                      + +.+..+|.++.|+.
T Consensus       173 ~-~~A~~~gadiIgin  187 (260)
T PRK00278        173 L-ERALKLGAPLIGIN  187 (260)
T ss_pred             H-HHHHHcCCCEEEEC
Confidence            2 34556799998875

>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain

Probab=90.88  E-value=0.79  Score=42.71  Aligned_cols=91  Identities=12%  Similarity=0.057  Sum_probs=57.7

Q ss_pred             cccceeeecCCccccCCC-HHHHHHHHHc--CCcEEEeccccc----chh--h--------hcCCCC----CCCChHHHH
Q 037779           27 KVGLAQMLRGGVIMDVVT-PEQARIAEEA--GACAVMALERVP----ADI--R--------AQGGVA----RMSDPQLIK   85 (310)
Q Consensus        27 ~~~~~~~l~~g~i~~~~~-~~~a~~~~~~--Ga~~I~~l~~~~----~d~--r--------~~~G~~----~~~~~~~i~   85 (310)
                      ..|+.++|+-+.  +..+ .++++.+.+.  |+++|...|...    -|.  +        .++|-.    +......++
T Consensus       157 ~iPv~vKl~p~~--~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~  234 (294)
T cd04741         157 SIPVGVKTPPYT--DPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVR  234 (294)
T ss_pred             CCCEEEEeCCCC--CHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHH
Confidence            367788887754  2112 4677877788  899987555220    011  0        111110    111245567


Q ss_pred             HHHhhc--CcceEeeccccchHHHHHHHHcCCCeee
Q 037779           86 QIKSSV--TIPVMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        86 ~i~~~~--~lPv~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      ++++.+  ++||+....+.+.+++..+..+||+.|-
T Consensus       235 ~~~~~~~~~ipIig~GGI~s~~da~e~l~aGA~~Vq  270 (294)
T cd04741         235 TFRRLLPSEIQIIGVGGVLDGRGAFRMRLAGASAVQ  270 (294)
T ss_pred             HHHHhcCCCCCEEEeCCCCCHHHHHHHHHcCCCcee
Confidence            777877  4999999999877777777779999997

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=90.86  E-value=2.8  Score=36.52  Aligned_cols=91  Identities=18%  Similarity=0.176  Sum_probs=54.9

Q ss_pred             HHHHHHHhcCCCCcEEeecC--CHH--HHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779          128 DEENHINKHNFRVPFVCGCR--NLG--ESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA  203 (310)
Q Consensus       128 ~~~~~~~~~~~~l~v~~~v~--t~~--ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  203 (310)
                      +.++.+++...+..+.+++|  ++.  +++.+.+.|+|++.++......+                              
T Consensus        41 ~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~vh~~~~~~~------------------------------   90 (206)
T TIGR03128        41 EAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVTVLGVADDAT------------------------------   90 (206)
T ss_pred             HHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEEEeccCCHHH------------------------------
Confidence            45566665444566777765  443  68888999999999884321000                              


Q ss_pred             ccCCCcHHHHHHHHhcCCCCEEEEccCCCCCH-HHHHHHHHcCCCEEEEcccc
Q 037779          204 KNIAAPYDLVMQTKQLGRLPVVHFAAGGVATP-ADAAMMMQLGCDGVFVGSGV  255 (310)
Q Consensus       204 ~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~-~di~~~~~~GadgV~VGsai  255 (310)
                           ..++++.+++ ..+++.+ .--+-.++ +.+..+.+.|+|.|.+...+
T Consensus        91 -----~~~~i~~~~~-~g~~~~~-~~~~~~t~~~~~~~~~~~g~d~v~~~pg~  136 (206)
T TIGR03128        91 -----IKGAVKAAKK-HGKEVQV-DLINVKDKVKRAKELKELGADYIGVHTGL  136 (206)
T ss_pred             -----HHHHHHHHHH-cCCEEEE-EecCCCChHHHHHHHHHcCCCEEEEcCCc
Confidence                 1344555554 3467642 11233343 77788888899988776543

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=90.76  E-value=1.3  Score=41.98  Aligned_cols=88  Identities=17%  Similarity=0.125  Sum_probs=58.1

Q ss_pred             ccceeeecCCccccCCC-HHHHHHHHHcCCcEEEeccccc---chhhh--------cCCCC-CCCChHHHHHHHhhcCcc
Q 037779           28 VGLAQMLRGGVIMDVVT-PEQARIAEEAGACAVMALERVP---ADIRA--------QGGVA-RMSDPQLIKQIKSSVTIP   94 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~~~-~~~a~~~~~~Ga~~I~~l~~~~---~d~r~--------~~G~~-~~~~~~~i~~i~~~~~lP   94 (310)
                      .|+..+|+.+.    .+ .+.++.++++|+++|...|+.+   -|.+.        +.|.. +....+.++++++.+++|
T Consensus       166 iPV~vKl~p~~----~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~~ip  241 (334)
T PRK07565        166 IPVAVKLSPYF----SNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRVGAD  241 (334)
T ss_pred             CcEEEEeCCCc----hhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhcCCC
Confidence            57777776532    23 5789999999999996666321   11100        01111 111234567777778999


Q ss_pred             eEeeccccchHHHHHHHHcCCCeee
Q 037779           95 VMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        95 v~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      |+....+.+.+++..+..+||+.|-
T Consensus       242 Iig~GGI~s~~Da~e~l~aGA~~V~  266 (334)
T PRK07565        242 LAATTGVHDAEDVIKMLLAGADVVM  266 (334)
T ss_pred             EEEECCCCCHHHHHHHHHcCCCcee
Confidence            9999888877888777789999997

>PRK11572 copper homeostasis protein CutC; Provisional

Probab=90.59  E-value=1.6  Score=39.65  Aligned_cols=77  Identities=19%  Similarity=0.321  Sum_probs=47.9

Q ss_pred             eecCCHHHHHHHHHhCCCEEEEec-CCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCC
Q 037779          144 CGCRNLGESLRRIREGAAMIRTKG-EAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRL  222 (310)
Q Consensus       144 ~~v~t~~ea~~a~~~Gad~I~v~g-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~i  222 (310)
                      +.+.|++++..|.+.|||=|=... -..+                                 ++.+++.+++.+.+..++
T Consensus         6 vcv~s~~~a~~A~~~GAdRiELc~~L~~G---------------------------------GlTPS~g~i~~~~~~~~i   52 (248)
T PRK11572          6 ICCYSMECALTAQQAGADRIELCAAPKEG---------------------------------GLTPSLGVLKSVRERVTI   52 (248)
T ss_pred             EEECCHHHHHHHHHcCCCEEEEccCcCCC---------------------------------CcCCCHHHHHHHHHhcCC
Confidence            456789999999999998765431 1111                                 123456666666665567


Q ss_pred             CEEEEc--cCC--CCCH-------HHHHHHHHcCCCEEEEcc
Q 037779          223 PVVHFA--AGG--VATP-------ADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       223 PVv~ia--~GG--I~t~-------~di~~~~~~GadgV~VGs  253 (310)
                      ||.++.  -||  ..|.       +|++.+.++|+|||++|-
T Consensus        53 pv~vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~   94 (248)
T PRK11572         53 PVHPIIRPRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTGV   94 (248)
T ss_pred             CeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEee
Confidence            764331  122  1222       356677788999999985

>PRK03170 dihydrodipicolinate synthase; Provisional

Probab=90.47  E-value=14  Score=34.03  Aligned_cols=82  Identities=16%  Similarity=0.206  Sum_probs=45.6

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCC-CCCCChH---HHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGV-ARMSDPQ---LIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGV  115 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~-~~~~~~~---~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGa  115 (310)
                      +.++.+.+.|++++....        ..|. ..+...+   .++.+++.+  ++||++...-..    .+.++.+.++|+
T Consensus        26 ~~i~~l~~~Gv~gi~~~G--------s~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G~   97 (292)
T PRK03170         26 KLVDYLIANGTDGLVVVG--------TTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAGA   97 (292)
T ss_pred             HHHHHHHHcCCCEEEECC--------cCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcCC
Confidence            679999999999984320        0011 1122222   344444443  488887644321    246677888999


Q ss_pred             Ceeee-cCC---CChhHHHHHHHh
Q 037779          116 DYVDE-SEV---LTPADEENHINK  135 (310)
Q Consensus       116 d~v~~-~~~---~~~~~~~~~~~~  135 (310)
                      |++.. +..   .+..++.+.++.
T Consensus        98 d~v~~~pP~~~~~~~~~i~~~~~~  121 (292)
T PRK03170         98 DGALVVTPYYNKPTQEGLYQHFKA  121 (292)
T ss_pred             CEEEECCCcCCCCCHHHHHHHHHH
Confidence            99873 221   233455554443

>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III

Probab=90.46  E-value=19  Score=35.36  Aligned_cols=51  Identities=31%  Similarity=0.495  Sum_probs=41.1

Q ss_pred             CCEEEEccCCCCCHHHHHHHHH-cCCCEE-EEccccccCC-CHHHHHHHHHHHHHcCC
Q 037779          222 LPVVHFAAGGVATPADAAMMMQ-LGCDGV-FVGSGVFKSG-DPVRRARAIVQAVTNYS  276 (310)
Q Consensus       222 iPVv~ia~GGI~t~~di~~~~~-~GadgV-~VGsai~~~~-dp~~~~~~~~~~~~~~~  276 (310)
                      +||   .+||++ +..+.++++ +|-|-| .+|.+++..+ .+..-+++|+++++++.
T Consensus       337 ~Pv---~sGG~~-~~~vp~~~~~~G~Dvil~~GGGi~gHp~G~~aGa~A~rqA~ea~~  390 (412)
T TIGR03326       337 FPV---SSGGLH-PGLVPPLIDALGKDLVIQAGGGVHGHPDGPRAGAKALRAAIDAII  390 (412)
T ss_pred             eEe---cCCCCC-hhHHHHHHHhcCCceEEecCCccccCCCChhhHHHHHHHHHHHHH
Confidence            465   689995 999999997 698865 4688899865 58888999999998744

Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=90.43  E-value=1.8  Score=41.13  Aligned_cols=91  Identities=15%  Similarity=0.032  Sum_probs=58.7

Q ss_pred             ccceeeecCCccccCC--C-HHHHHHHHHcCCcEEEecccccchhhhcCCC----CCCCChHHHHHHHhhc-CcceEeec
Q 037779           28 VGLAQMLRGGVIMDVV--T-PEQARIAEEAGACAVMALERVPADIRAQGGV----ARMSDPQLIKQIKSSV-TIPVMAKA   99 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~~--~-~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~----~~~~~~~~i~~i~~~~-~lPv~~kd   99 (310)
                      .|+..++|.|.-.+..  + .++++.++++|+++|.+-.+.... ..+.|.    ....+.+.++++++.+ ++||+.+.
T Consensus       134 ~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~-~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~nG  212 (333)
T PRK11815        134 IPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWL-KGLSPKENREIPPLDYDRVYRLKRDFPHLTIEING  212 (333)
T ss_pred             CceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhh-cCCCccccccCCCcCHHHHHHHHHhCCCCeEEEEC
Confidence            5777877776543221  1 377999999999998432111100 001111    1123477888998875 89999999


Q ss_pred             cccchHHHHHHHHcCCCeeee
Q 037779          100 RIGHFVEAQILEAIGVDYVDE  120 (310)
Q Consensus       100 ~i~~~~~~~~~~~aGad~v~~  120 (310)
                      .+.+.++++.+.+ |+|.|.+
T Consensus       213 gI~s~eda~~~l~-~aDgVmI  232 (333)
T PRK11815        213 GIKTLEEAKEHLQ-HVDGVMI  232 (333)
T ss_pred             CcCCHHHHHHHHh-cCCEEEE
Confidence            9987777776665 7999874

>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism

Probab=90.42  E-value=8.9  Score=34.54  Aligned_cols=174  Identities=15%  Similarity=0.122  Sum_probs=103.4

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-ecCC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEV  123 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~  123 (310)
                      .+.|..++++||++|..- + ..|.|.-       ..+++..+++.++.|+=.-... +.+..+++.+.--+.+. .++.
T Consensus        24 v~aA~~a~~aGAdgITvH-l-ReDrRHI-------~d~Dv~~L~~~~~~~lNlE~a~-t~em~~ia~~~kP~~vtLVPEk   93 (234)
T cd00003          24 VEAALLAEKAGADGITVH-L-REDRRHI-------QDRDVRLLRELVRTELNLEMAP-TEEMLEIALEVKPHQVTLVPEK   93 (234)
T ss_pred             HHHHHHHHHcCCCEEEec-C-CCCcCcC-------CHHHHHHHHHHcCCCEEeccCC-CHHHHHHHHHCCCCEEEECCCC
Confidence            388999999999998432 1 1244443       3778999998888776332221 33566788888888875 3211


Q ss_pred             ---CC-------------hhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHHHHHhhc
Q 037779          124 ---LT-------------PADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRHVRSVMG  186 (310)
Q Consensus       124 ---~~-------------~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~  186 (310)
                         ++             ...+++.++..+..+-++++. ++++++.+.+.|||.|=.+ |+ |...             
T Consensus        94 r~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP-d~~qi~~A~~~GAd~VELhTG~-Ya~a-------------  158 (234)
T cd00003          94 REELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDP-DPEQIEAAKEVGADRVELHTGP-YANA-------------  158 (234)
T ss_pred             CCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCC-CHHHHHHHHHhCcCEEEEechh-hhcC-------------
Confidence               11             124455555555556666664 6778889999999999776 32 1100             


Q ss_pred             ceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEcccccc
Q 037779          187 DIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFK  257 (310)
Q Consensus       187 ~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~  257 (310)
                          +..-..+      ..+..-....+... ...+-|  =|.-|+ +.+++..+.+. +..-+-+|-+|+.
T Consensus       159 ----~~~~~~~------~el~~i~~aa~~a~-~~GL~V--nAGHgL-ny~Nv~~i~~ip~i~ElnIGHsiia  216 (234)
T cd00003         159 ----YDKAERE------AELERIAKAAKLAR-ELGLGV--NAGHGL-NYENVKPIAKIPGIAELNIGHAIIS  216 (234)
T ss_pred             ----CCchhHH------HHHHHHHHHHHHHH-HcCCEE--ecCCCC-CHHHHHHHHhCCCCeEEccCHHHHH
Confidence                0000000      00000001111111 134555  578899 59999988875 8899999988875

In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2

Probab=90.42  E-value=0.87  Score=43.10  Aligned_cols=91  Identities=18%  Similarity=0.216  Sum_probs=59.2

Q ss_pred             ccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccc--------hhhhcC---CCC-CCCChHHHHHHHhhc--Cc
Q 037779           28 VGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPA--------DIRAQG---GVA-RMSDPQLIKQIKSSV--TI   93 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~--------d~r~~~---G~~-~~~~~~~i~~i~~~~--~l   93 (310)
                      .|+..+|+.+. ......++++.++++|+++|...|+...        ....++   |.. .....+.++.+++.+  ++
T Consensus       203 ~Pv~vKl~~~~-~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~i  281 (327)
T cd04738         203 VPLLVKIAPDL-SDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKI  281 (327)
T ss_pred             CCeEEEeCCCC-CHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCC
Confidence            57777776432 1101247899999999999965552210        000011   110 011256788888888  79


Q ss_pred             ceEeeccccchHHHHHHHHcCCCeee
Q 037779           94 PVMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        94 Pv~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      ||+....+.+.+++..+..+|||.|.
T Consensus       282 pIi~~GGI~t~~da~e~l~aGAd~V~  307 (327)
T cd04738         282 PIIGVGGISSGEDAYEKIRAGASLVQ  307 (327)
T ss_pred             cEEEECCCCCHHHHHHHHHcCCCHHh
Confidence            99999888887888777789999986

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.

>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase

Probab=90.40  E-value=8.9  Score=34.61  Aligned_cols=186  Identities=17%  Similarity=0.186  Sum_probs=109.6

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-ecCC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEV  123 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~  123 (310)
                      .+.|..++++||+.|..- + ..|.|.-       ..++++.+++.++.|+=.-... +.+..+.+.+.-.+.+. .++.
T Consensus        24 v~aA~~a~~aGAdgITvH-l-ReDrRHI-------~d~Dv~~l~~~~~~~lNlE~a~-~~emi~ia~~vkP~~vtLVPEk   93 (237)
T TIGR00559        24 LRAALIAEQAGADGITVH-L-REDRRHI-------QDRDVYDLKEALTTPFNIEMAP-TEEMIRIAEEIKPEQVTLVPEA   93 (237)
T ss_pred             HHHHHHHHHcCCCEEEec-C-CCCcCcC-------CHHHHHHHHHHcCCCEEeccCC-CHHHHHHHHHcCCCEEEECCCC
Confidence            388999999999998432 1 1244443       3788999998888877332222 33566788888888875 3211


Q ss_pred             ---------CC-------hhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHHHHHhhc
Q 037779          124 ---------LT-------PADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRHVRSVMG  186 (310)
Q Consensus       124 ---------~~-------~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~  186 (310)
                               +.       ...+++.++..+..+-++++. ++++++.+.+.|||.|=.+ |+ |...             
T Consensus        94 r~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP-~~~qi~~A~~~GAd~VELhTG~-YA~a-------------  158 (237)
T TIGR00559        94 RDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDA-DKDQISAAAEVGADRIEIHTGP-YANA-------------  158 (237)
T ss_pred             CCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCC-CHHHHHHHHHhCcCEEEEechh-hhcC-------------
Confidence                     11       224455555555556666664 5778888999999999876 32 1100             


Q ss_pred             ceecccccCchhHHhhhccCCCcHHHHHHH---HhcCCCCEEEEccCCCCCHHHHHHHHHc-C-CCEEEEccccccCC--
Q 037779          187 DIRVLRNMDDDEVFTFAKNIAAPYDLVMQT---KQLGRLPVVHFAAGGVATPADAAMMMQL-G-CDGVFVGSGVFKSG--  259 (310)
Q Consensus       187 ~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i---~~~~~iPVv~ia~GGI~t~~di~~~~~~-G-adgV~VGsai~~~~--  259 (310)
                          +   +...       .....+.+...   .....+-|  =|.-|+ +.+++..+.+. + ..-+-+|-+|+.--  
T Consensus       159 ----~---~~~~-------~~~el~~i~~aa~~A~~lGL~V--nAGHgL-ny~Nv~~i~~~~~~i~EvnIGHsiia~Al~  221 (237)
T TIGR00559       159 ----Y---NKKE-------MAEELQRIVKASVHAHSLGLKV--NAGHGL-NYHNVKYFAEILPYLDELNIGHAIIADAVY  221 (237)
T ss_pred             ----C---Cchh-------HHHHHHHHHHHHHHHHHcCCEE--ecCCCC-CHHhHHHHHhCCCCceEEecCHHHHHHHHH
Confidence                0   0000       00001111111   11134555  678899 59999998775 5 79999998887521  


Q ss_pred             -CHHHHHHHHHHHH
Q 037779          260 -DPVRRARAIVQAV  272 (310)
Q Consensus       260 -dp~~~~~~~~~~~  272 (310)
                       -..+.+++|++.+
T Consensus       222 ~Gl~~AV~~m~~~~  235 (237)
T TIGR00559       222 LGLEEAIREMRDLI  235 (237)
T ss_pred             HhHHHHHHHHHHHH
Confidence             1234455555444

PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.

>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Probab=90.40  E-value=14  Score=33.64  Aligned_cols=85  Identities=20%  Similarity=0.193  Sum_probs=52.4

Q ss_pred             cccCCCHHHHHHHHHcCCcEE-EecccccchhhhcCCCCCCCChHHHH-HHHh--hcCcceEeeccccchHHHHHHHHcC
Q 037779           39 IMDVVTPEQARIAEEAGACAV-MALERVPADIRAQGGVARMSDPQLIK-QIKS--SVTIPVMAKARIGHFVEAQILEAIG  114 (310)
Q Consensus        39 i~~~~~~~~a~~~~~~Ga~~I-~~l~~~~~d~r~~~G~~~~~~~~~i~-~i~~--~~~lPv~~kd~i~~~~~~~~~~~aG  114 (310)
                      .....++.+++.+...|+|++ .+++       +  |..   +.+.+. .++.  ..+..++++.--.....++.+.++|
T Consensus        17 ~~~~~~p~~~e~~~~~g~D~v~iDlE-------H--~~~---~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~Ld~G   84 (249)
T TIGR02311        17 WLGLADPYAAEICAGAGFDWLLIDGE-------H--APN---DVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQLLDIG   84 (249)
T ss_pred             EEeCCCcHHHHHHHhcCCCEEEEecc-------C--CCC---CHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHHhCCC
Confidence            344566899999999999997 2332       1  110   122222 2222  2345555553333334678889999


Q ss_pred             CCeeeecCCCChhHHHHHHHh
Q 037779          115 VDYVDESEVLTPADEENHINK  135 (310)
Q Consensus       115 ad~v~~~~~~~~~~~~~~~~~  135 (310)
                      ++.|+.+...+++++.+..+.
T Consensus        85 a~gIivP~v~s~e~a~~~v~~  105 (249)
T TIGR02311        85 AQTLLVPMIETAEQAEAAVAA  105 (249)
T ss_pred             CCEEEecCcCCHHHHHHHHHH
Confidence            999998877777777666654

This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.

>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated

Probab=90.36  E-value=1.8  Score=39.69  Aligned_cols=81  Identities=14%  Similarity=0.120  Sum_probs=47.4

Q ss_pred             HHHHHHHHcCCcEEEecc-ccc-ch-hhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHc--CCCeeee
Q 037779           46 EQARIAEEAGACAVMALE-RVP-AD-IRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAI--GVDYVDE  120 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~-~d-~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~a--Gad~v~~  120 (310)
                      +.|+.+.+.||+.| +++ ..+ .+ ....        ...++.+++.+++|+++...  +.+-++.+.++  |++.|-.
T Consensus        29 ~~A~~~~~~GAdiI-DVg~~~~~~eE~~r~--------~~~v~~l~~~~~~plsIDT~--~~~v~eaaL~~~~G~~iINs   97 (261)
T PRK07535         29 KLALKQAEAGADYL-DVNAGTAVEEEPETM--------EWLVETVQEVVDVPLCIDSP--NPAAIEAGLKVAKGPPLINS   97 (261)
T ss_pred             HHHHHHHHCCCCEE-EECCCCCchhHHHHH--------HHHHHHHHHhCCCCEEEeCC--CHHHHHHHHHhCCCCCEEEe
Confidence            67899999999998 775 111 11 1100        33566677777899877644  23455666666  9998862


Q ss_pred             cCCCC--hhHHHHHHHhcC
Q 037779          121 SEVLT--PADEENHINKHN  137 (310)
Q Consensus       121 ~~~~~--~~~~~~~~~~~~  137 (310)
                      .....  .+.....+++++
T Consensus        98 Is~~~~~~~~~~~l~~~~g  116 (261)
T PRK07535         98 VSAEGEKLEVVLPLVKKYN  116 (261)
T ss_pred             CCCCCccCHHHHHHHHHhC
Confidence            22211  334555555543

>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R

Probab=90.25  E-value=18  Score=34.85  Aligned_cols=47  Identities=34%  Similarity=0.642  Sum_probs=36.6

Q ss_pred             CCEEEEccCCCCCHHHHHHHHH-cCCCEE-EEccccccCCC-HHHHHHHHHHHH
Q 037779          222 LPVVHFAAGGVATPADAAMMMQ-LGCDGV-FVGSGVFKSGD-PVRRARAIVQAV  272 (310)
Q Consensus       222 iPVv~ia~GGI~t~~di~~~~~-~GadgV-~VGsai~~~~d-p~~~~~~~~~~~  272 (310)
                      .|+   .+||++ +..+.++++ +|.|-+ .+|..++..++ +.+-+++|++++
T Consensus       315 ~Pv---~sgG~~-~~~v~~l~~~~G~Dvil~aGGgi~gHp~g~~ag~~a~rqa~  364 (364)
T cd08210         315 LPA---PGGGMS-VERAPEMVELYGPDVMLLIGGSLLRAGDDLTENTRAFVEAV  364 (364)
T ss_pred             cCc---CCCCcC-HHHHHHHHHHcCCcEEEEccccccCCCCChHHHHHHHHhhC
Confidence            477   479994 899999997 587744 46789999887 888888888763

rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.

>PLN02460 indole-3-glycerol-phosphate synthase

Probab=90.16  E-value=0.87  Score=43.27  Aligned_cols=86  Identities=12%  Similarity=0.161  Sum_probs=58.8

Q ss_pred             cHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc--------CCChh
Q 037779          209 PYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN--------YSDPD  279 (310)
Q Consensus       209 ~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~--------~~~~~  279 (310)
                      +++.+..+++. .++||+. =..=| ++-++.++..+|||+|++--+++..    ..++.|.+..+.        -++..
T Consensus       168 s~e~L~~vr~~~v~lPvLr-KDFII-D~yQI~eAr~~GADAVLLIaaiL~~----~~L~~l~~~A~~LGme~LVEVH~~~  241 (338)
T PLN02460        168 SFENLEAIRNAGVKCPLLC-KEFIV-DAWQIYYARSKGADAILLIAAVLPD----LDIKYMLKICKSLGMAALIEVHDER  241 (338)
T ss_pred             CHHHHHHHHHcCCCCCEee-ccccC-CHHHHHHHHHcCCCcHHHHHHhCCH----HHHHHHHHHHHHcCCeEEEEeCCHH
Confidence            56677888876 7889863 23334 7999999999999999999988863    245555555444        34445


Q ss_pred             hHHhhhhccCCceeccccccc
Q 037779          280 VLAEVSCGLGEAMVGIDLNDV  300 (310)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~  300 (310)
                      -+.......|..+.||.=.|.
T Consensus       242 ElerAl~~~ga~iIGINNRdL  262 (338)
T PLN02460        242 EMDRVLGIEGVELIGINNRSL  262 (338)
T ss_pred             HHHHHHhcCCCCEEEEeCCCC
Confidence            555544433888888864443

>cd00945 Aldolase_Class_I Class I aldolases

Probab=90.08  E-value=4.6  Score=34.27  Aligned_cols=115  Identities=19%  Similarity=0.113  Sum_probs=64.9

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCC-CCCCChHHHHHHHhh--cCcceEeecccc---chHH----HHHHHHcC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGV-ARMSDPQLIKQIKSS--VTIPVMAKARIG---HFVE----AQILEAIG  114 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~-~~~~~~~~i~~i~~~--~~lPv~~kd~i~---~~~~----~~~~~~aG  114 (310)
                      .+.++.+.+.|++++...-     ..++..+ ......+.++++++.  .++|+++.....   ..+.    .+.+...|
T Consensus        68 ~~~a~~a~~~Gad~i~v~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g  142 (201)
T cd00945          68 VAEVEEAIDLGADEIDVVI-----NIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAG  142 (201)
T ss_pred             HHHHHHHHHcCCCEEEEec-----cHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            4789999999999985431     1111000 000114556677777  489998865432   1122    23345689


Q ss_pred             CCeeeecCC-----CChhHHHHHHHhcCCC--CcEEeecCCHHHHHHHHHhCCCEEE
Q 037779          115 VDYVDESEV-----LTPADEENHINKHNFR--VPFVCGCRNLGESLRRIREGAAMIR  164 (310)
Q Consensus       115 ad~v~~~~~-----~~~~~~~~~~~~~~~~--l~v~~~v~t~~ea~~a~~~Gad~I~  164 (310)
                      ++.|-.+..     .+...+.........+  +.+..+.++++.+..+...|++-+.
T Consensus       143 ~~~iK~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~  199 (201)
T cd00945         143 ADFIKTSTGFGGGGATVEDVKLMKEAVGGRVGVKAAGGIKTLEDALAAIEAGADGIG  199 (201)
T ss_pred             CCEEEeCCCCCCCCCCHHHHHHHHHhcccCCcEEEECCCCCHHHHHHHHHhccceee
Confidence            999864322     1334443333322223  3344456667888888888987654

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>cd00423 Pterin_binding Pterin binding enzymes

Probab=90.07  E-value=4.1  Score=37.15  Aligned_cols=89  Identities=12%  Similarity=0.072  Sum_probs=48.8

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcC--CC-CCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeecC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQG--GV-ARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESE  122 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~--G~-~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~  122 (310)
                      +.|+.+.+.||+.| +++..++-+....  .. ....-...++.+++.+++|+++..+  +.+-++.+.++|++.|....
T Consensus        28 ~~a~~~~~~GAdiI-DvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~--~~~v~~aaL~~g~~iINdis  104 (258)
T cd00423          28 EHARRMVEEGADII-DIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVDTF--NAEVAEAALKAGADIINDVS  104 (258)
T ss_pred             HHHHHHHHCCCCEE-EECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCC--cHHHHHHHHHhCCCEEEeCC
Confidence            67899999999998 7762222110000  00 0000023455666666888866544  33566778889999886322


Q ss_pred             CCCh-hHHHHHHHhcC
Q 037779          123 VLTP-ADEENHINKHN  137 (310)
Q Consensus       123 ~~~~-~~~~~~~~~~~  137 (310)
                      ..+. +++.+.+++++
T Consensus       105 ~~~~~~~~~~l~~~~~  120 (258)
T cd00423         105 GGRGDPEMAPLAAEYG  120 (258)
T ss_pred             CCCCChHHHHHHHHcC
Confidence            2222 45555555443

This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.

>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain

Probab=89.95  E-value=1.3  Score=36.39  Aligned_cols=55  Identities=22%  Similarity=0.338  Sum_probs=34.6

Q ss_pred             HHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779          211 DLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       211 ~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                      ++++.+++..  +++|  ++ ||....++..++.++|.|++.     ....++.+.++.+.+.+.
T Consensus        72 ~~~~~L~~~g~~~i~v--iv-GG~~~~~~~~~l~~~Gvd~~~-----~~gt~~~~i~~~l~~~~~  128 (132)
T TIGR00640        72 ALRKELDKLGRPDILV--VV-GGVIPPQDFDELKEMGVAEIF-----GPGTPIPESAIFLLKKLR  128 (132)
T ss_pred             HHHHHHHhcCCCCCEE--EE-eCCCChHhHHHHHHCCCCEEE-----CCCCCHHHHHHHHHHHHH
Confidence            4555555532  4555  33 665457789999999998864     233367777777766553

Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.

>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]

Probab=89.83  E-value=1.9  Score=38.37  Aligned_cols=75  Identities=25%  Similarity=0.185  Sum_probs=54.2

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      ++.+.+.++.+.+.|++.|-.....||.-+  .+. ...-.+.++.+++...+|+.+..+++. +.+..+.++||++|.
T Consensus       110 S~h~~eea~~A~~~g~DYv~~GpifpT~tK--~~~-~~~G~~~l~~~~~~~~iP~vAIGGi~~-~nv~~v~~~Ga~gVA  184 (211)
T COG0352         110 STHDLEEALEAEELGADYVGLGPIFPTSTK--PDA-PPLGLEGLREIRELVNIPVVAIGGINL-ENVPEVLEAGADGVA  184 (211)
T ss_pred             ecCCHHHHHHHHhcCCCEEEECCcCCCCCC--CCC-CccCHHHHHHHHHhCCCCEEEEcCCCH-HHHHHHHHhCCCeEE
Confidence            455789999999999999844333333221  111 233477888888888899988877763 567889999999997

>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases

Probab=89.78  E-value=2.9  Score=37.07  Aligned_cols=84  Identities=17%  Similarity=0.142  Sum_probs=52.4

Q ss_pred             hHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee--ec----CCCChh----HHHHHHHhcCCC-CcEEeecCCH
Q 037779           81 PQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD--ES----EVLTPA----DEENHINKHNFR-VPFVCGCRNL  149 (310)
Q Consensus        81 ~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~--~~----~~~~~~----~~~~~~~~~~~~-l~v~~~v~t~  149 (310)
                      .+.++.+++. ++++.+-... +..++..+..+||++|.  ..    ....+.    ++.+.++.++.. ..+.++++|+
T Consensus        91 l~ai~~L~~~-gi~v~~T~V~-s~~Qa~~Aa~AGA~yvsP~vgR~~~~g~dg~~~i~~i~~~~~~~~~~tkil~As~r~~  168 (211)
T cd00956          91 LKAIKKLSEE-GIKTNVTAIF-SAAQALLAAKAGATYVSPFVGRIDDLGGDGMELIREIRTIFDNYGFDTKILAASIRNP  168 (211)
T ss_pred             HHHHHHHHHc-CCceeeEEec-CHHHHHHHHHcCCCEEEEecChHhhcCCCHHHHHHHHHHHHHHcCCCceEEecccCCH
Confidence            4455555444 5555443322 34677778889999965  11    111222    444444444433 2377799999


Q ss_pred             HHHHHHHHhCCCEEEEe
Q 037779          150 GESLRRIREGAAMIRTK  166 (310)
Q Consensus       150 ~ea~~a~~~Gad~I~v~  166 (310)
                      .|+..+...|+|++++.
T Consensus       169 ~ei~~a~~~Gad~vTv~  185 (211)
T cd00956         169 QHVIEAALAGADAITLP  185 (211)
T ss_pred             HHHHHHHHcCCCEEEeC
Confidence            99999999999999985

FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.

>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=89.76  E-value=17  Score=33.70  Aligned_cols=172  Identities=18%  Similarity=0.211  Sum_probs=93.3

Q ss_pred             HHHHHH----HHcCCcEEEe--cc-cccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779           46 EQARIA----EEAGACAVMA--LE-RVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYV  118 (310)
Q Consensus        46 ~~a~~~----~~~Ga~~I~~--l~-~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v  118 (310)
                      +.|+.+    .+.|+..+--  .- ...|.+..|.|-....-++.++++++.+++|++--  +....+++.+.+. +|.+
T Consensus        34 ~iA~~lk~i~~~~g~~~~fK~sf~KapRTSp~sFqG~G~eeGL~iL~~vk~~~GlpvvTe--V~~~~~~~~~ae~-vDil  110 (281)
T PRK12457         34 DVCGEYVEVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLRIFEEVKARFGVPVITD--VHEVEQAAPVAEV-ADVL  110 (281)
T ss_pred             HHHHHHHHHHHHCCCcEEeeeccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCceEEE--eCCHHHHHHHhhh-CeEE
Confidence            445554    4689887511  00 12244556665443445778899999999999653  2223456666666 7877


Q ss_pred             eecCC-CChhHHHHHHHhcCCCCcEEee---cCCHHHHH----HHHHhCCC-EEEEe-cCCCCCchHHHHHHHHHhhcce
Q 037779          119 DESEV-LTPADEENHINKHNFRVPFVCG---CRNLGESL----RRIREGAA-MIRTK-GEAGTGNIVEAVRHVRSVMGDI  188 (310)
Q Consensus       119 ~~~~~-~~~~~~~~~~~~~~~~l~v~~~---v~t~~ea~----~a~~~Gad-~I~v~-g~~~~~~~~~~~~~~~~~~~~~  188 (310)
                      -+.+. ....++.+.+.+  .+.++.+.   .-+++|..    +....|.. ++-.. |..++.+               
T Consensus       111 QIgAr~~rntdLL~a~~~--t~kpV~lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~fgy~---------------  173 (281)
T PRK12457        111 QVPAFLARQTDLVVAIAK--TGKPVNIKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSSFGYD---------------  173 (281)
T ss_pred             eeCchhhchHHHHHHHhc--cCCeEEecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCCCCC---------------
Confidence            65532 234456655554  23455442   13455543    33345664 33333 3222111               


Q ss_pred             ecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEcc-------------CCCCC--HHHHHHHHHcCCCEEEEc
Q 037779          189 RVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAA-------------GGVAT--PADAAMMMQLGCDGVFVG  252 (310)
Q Consensus       189 ~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~-------------GGI~t--~~di~~~~~~GadgV~VG  252 (310)
                                      +...+..-+..+++. .++||+.-++             ||...  +.-++..+..|+||+++=
T Consensus       174 ----------------~~~~D~~~ip~mk~~~t~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl~iE  237 (281)
T PRK12457        174 ----------------NLVVDMLGFRQMKRTTGDLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGLFLE  237 (281)
T ss_pred             ----------------CcccchHHHHHHHhhCCCCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence                            112244555667774 5789976543             33211  122456667899999987


Q ss_pred             c
Q 037779          253 S  253 (310)
Q Consensus       253 s  253 (310)
                      +
T Consensus       238 v  238 (281)
T PRK12457        238 A  238 (281)
T ss_pred             e
Confidence            5

>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]

Probab=89.73  E-value=3.1  Score=40.40  Aligned_cols=152  Identities=20%  Similarity=0.199  Sum_probs=0.0

Q ss_pred             HcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEe----eccccch--------HHHHHHHHcCCCeee
Q 037779           53 EAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMA----KARIGHF--------VEAQILEAIGVDYVD  119 (310)
Q Consensus        53 ~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~----kd~i~~~--------~~~~~~~~aGad~v~  119 (310)
                      ++||..=+.+++.+.|+           ++.++++++.+ +.|+..    +..+|+.        .+++...+.|.|.+-
T Consensus        48 WGGATFDaciRfLnEDP-----------WeRLr~lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfR  116 (472)
T COG5016          48 WGGATFDACIRFLNEDP-----------WERLRELKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFVEKAAENGIDVFR  116 (472)
T ss_pred             cCCccHHHHHHHhcCCH-----------HHHHHHHHHhCCCcHHHHHHccCccccccCCchHHHHHHHHHHHhcCCcEEE


Q ss_pred             ----ecCCCChhHHHHHHHhcCCCCcEEee-----cCCHH----HHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhc
Q 037779          120 ----ESEVLTPADEENHINKHNFRVPFVCG-----CRNLG----ESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMG  186 (310)
Q Consensus       120 ----~~~~~~~~~~~~~~~~~~~~l~v~~~-----v~t~~----ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~  186 (310)
                          ..+..+....++.+++++.......+     +||.+    -++...+.|+|.|++.-..+.-+...+         
T Consensus       117 iFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~a---------  187 (472)
T COG5016         117 IFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEA---------  187 (472)
T ss_pred             echhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEeecccccCChHHH---------


Q ss_pred             ceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEE---ccCCCCCHHHHHHHHHcCCCEE
Q 037779          187 DIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHF---AAGGVATPADAAMMMQLGCDGV  249 (310)
Q Consensus       187 ~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~i---a~GGI~t~~di~~~~~~GadgV  249 (310)
                                             +++++.+++..++||. +   +..|+ +.-...++.++|+|++
T Consensus       188 -----------------------yelVk~iK~~~~~pv~-lHtH~TsG~-a~m~ylkAvEAGvD~i  228 (472)
T COG5016         188 -----------------------YELVKAIKKELPVPVE-LHTHATSGM-AEMTYLKAVEAGVDGI  228 (472)
T ss_pred             -----------------------HHHHHHHHHhcCCeeE-Eecccccch-HHHHHHHHHHhCcchh

>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases

Probab=89.72  E-value=19  Score=34.40  Aligned_cols=48  Identities=10%  Similarity=0.093  Sum_probs=37.4

Q ss_pred             cHHHHHHH----HhcC------CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          209 PYDLVMQT----KQLG------RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       209 ~~~l~~~i----~~~~------~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                      .+++++.+    .+..      ++|+|.=-++|+ +.+++++++++|..-|=++|.+-.
T Consensus       223 ~~~~L~~I~~~i~~~~~~~~~~~ipLVLHGgSG~-~~e~i~kai~~GI~KiNi~T~l~~  280 (345)
T cd00946         223 QPEILGEHQDYVREKLGLADDKPLYFVFHGGSGS-TKEEIREAISYGVVKMNIDTDTQW  280 (345)
T ss_pred             CHHHHHHHHHHHHHhhccccCCCCCEEEeCCCCC-CHHHHHHHHHcCCeeEEeCcHHHH
Confidence            56777777    3332      688876667777 479999999999999999998765

The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=89.71  E-value=1.5  Score=42.34  Aligned_cols=62  Identities=19%  Similarity=0.274  Sum_probs=47.7

Q ss_pred             CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc----ccccCCCHHHHHHHHHHHH
Q 037779          208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS----GVFKSGDPVRRARAIVQAV  272 (310)
Q Consensus       208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs----ai~~~~dp~~~~~~~~~~~  272 (310)
                      .+|+.++++++..++||++   -||.+++++..+.++|+|+|.|+.    -+...+.+...+.++.+++
T Consensus       215 ~~w~~i~~l~~~~~~Pviv---KGv~~~eda~~a~~~Gvd~I~VS~HGGrq~~~~~a~~~~L~ei~~av  280 (367)
T TIGR02708       215 LSPRDIEEIAGYSGLPVYV---KGPQCPEDADRALKAGASGIWVTNHGGRQLDGGPAAFDSLQEVAEAV  280 (367)
T ss_pred             CCHHHHHHHHHhcCCCEEE---eCCCCHHHHHHHHHcCcCEEEECCcCccCCCCCCcHHHHHHHHHHHh
Confidence            3688889998877899963   789999999999999999998754    4554444556666666655

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>PRK09549 mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase; Reviewed

Probab=89.67  E-value=22  Score=34.87  Aligned_cols=50  Identities=18%  Similarity=0.338  Sum_probs=40.0

Q ss_pred             EccCCCCCHHHHHHHHH-cCCCEE-EEccccccCC-CHHHHHHHHHHHHHcCCC
Q 037779          227 FAAGGVATPADAAMMMQ-LGCDGV-FVGSGVFKSG-DPVRRARAIVQAVTNYSD  277 (310)
Q Consensus       227 ia~GGI~t~~di~~~~~-~GadgV-~VGsai~~~~-dp~~~~~~~~~~~~~~~~  277 (310)
                      +++||++ +..+..+++ +|-|-+ .+|.+++..+ .+..-+++|+++++++..
T Consensus       328 v~sGG~~-~~~~p~~~~~~G~D~il~~GGgi~gHp~G~~aGa~A~rqA~ea~~~  380 (407)
T PRK09549        328 VPSAGIH-PGLVPLLIRDFGKDVVINAGGGIHGHPNGAQGGGKAFRAAIDAVLQ  380 (407)
T ss_pred             eecCCCC-hhHHHHHHHHhCCceEEecCCceecCCCCchhHHHHHHHHHHHHHc
Confidence            3689995 999999997 698865 4688899865 588888999999887543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	310
2zbt_A	297	Crystal Structure Of Pyridoxine Biosynthesis Protei		1e-103
2nv1_A	305	Structure Of The Synthase Subunit Pdx1 (Yaad) Of Pl		7e-92
2nv2_A	294	Structure Of The Plp Synthase Complex Pdx12 (YAADE)		9e-92
1znn_A	325	Structure Of The Synthase Subunit Of Plp Synthase L		2e-89
2iss_A	313	Structure Of The Plp Synthase Holoenzyme From Therm		2e-88
3fem_A	297	Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of		2e-86
2yzr_A	330	Crystal Structure Of Pyridoxine Biosynthesis Protei		1e-83
4adt_A	297	Crystal Structure Of Plasmodial Plp Synthase Length		1e-83
4ads_A	282	Crystal Structure Of Plasmodial Plp Synthase Comple		9e-83
3o05_A	291	Crystal Structure Of Yeast Pyridoxal 5-Phosphate Sy		2e-82
4fiq_A	335	Crystal Structure Of Pyridoxal Biosynthesis Lyase P		1e-78

>pdb|2ZBT|A Chain A, Crystal Structure Of Pyridoxine Biosynthesis Protein From Thermus Thermophilus Hb8 Length = 297

Iteration: 1
 Score =  369 bits (948), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 184/291 (63%), Positives = 223/291 (76%), Gaps = 1/291 (0%)
Query: 20  KKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMS 79
           +K  F +K G A+M +GGVIMDV TPEQA IAEEAGA AVMALERVPADIRAQGGVARMS
Sbjct: 6   EKGTFQIKTGFAEMFKGGVIMDVTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVARMS 65
Query: 80  DPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFR 139
           DP++IK+I ++V+IPVMAK RIGHFVEA ILEAIGVD++DESEVLTPADEE+HI+K  F+
Sbjct: 66  DPKIIKEIMAAVSIPVMAKVRIGHFVEAMILEAIGVDFIDESEVLTPADEEHHIDKWKFK 125
Query: 140 VPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEV 199
           VPFVCG RNLGE+LRRI EGAAMIRTKGEAGTGN+VEAVRH R++  +IR ++++ +DE+
Sbjct: 126 VPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHARTMWKEIRYVQSLREDEL 185
Query: 200 FTFAKNIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXX 259
             +AK I AP++LV      GRLPVV+F            +MM LG D            
Sbjct: 186 MAYAKEIGAPFELVKWVHDHGRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKSG 245
Query: 260 DPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVK-VERYANRS 309
           DP +RARAIV+AV +Y+DP+VLAEVS  LGE MVGI+L+ +K  ER A R 
Sbjct: 246 DPRKRARAIVRAVAHYNDPEVLAEVSEDLGEPMVGINLDQLKEEERLAKRG 296

>pdb|2NV1|A Chain A, Structure Of The Synthase Subunit Pdx1 (Yaad) Of Plp Synthase From Bacillus Subtilis Length = 305

Iteration: 1
 Score =  333 bits (854), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 161/279 (57%), Positives = 215/279 (77%)
Query: 26  VKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIK 85
           VK G+A+M +GGVIMDV+  EQA+IAEEAGA AVMALERVPADIRA GGVARM+DP +++
Sbjct: 12  VKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVE 71
Query: 86  QIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCG 145
           ++ ++V+IPVMAKARIGH VEA++LEA+GVDY+DESEVLTPADEE H+NK+ + VPFVCG
Sbjct: 72  EVMNAVSIPVMAKARIGHIVEARVLEAMGVDYIDESEVLTPADEEFHLNKNEYTVPFVCG 131
Query: 146 CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN 205
           CR+LGE+ RRI EGA+M+RTKGE GTGNIVEAVRH+R V   +R +  M +DE+ T AKN
Sbjct: 132 CRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKN 191
Query: 206 IAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVRRA 265
           + APY+L++Q K+ G+LPVV+F            +MMQLG D            +P + A
Sbjct: 192 LGAPYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPAKFA 251
Query: 266 RAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVER 304
           +AIV+A T+++D  ++AE+S  LG AM GI+++++  E+
Sbjct: 252 KAIVEATTHFTDYKLIAELSKELGTAMKGIEISNLLPEQ 290

>pdb|2NV2|A Chain A, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM BACILLUS Subtilis Length = 294

Iteration: 1
 Score =  333 bits (853), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 161/279 (57%), Positives = 215/279 (77%)
Query: 26  VKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIK 85
           VK G+A+M +GGVIMDV+  EQA+IAEEAGA AVMALERVPADIRA GGVARM+DP +++
Sbjct: 9   VKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVE 68
Query: 86  QIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCG 145
           ++ ++V+IPVMAKARIGH VEA++LEA+GVDY+DESEVLTPADEE H+NK+ + VPFVCG
Sbjct: 69  EVMNAVSIPVMAKARIGHIVEARVLEAMGVDYIDESEVLTPADEEFHLNKNEYTVPFVCG 128
Query: 146 CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN 205
           CR+LGE+ RRI EGA+M+RTKGE GTGNIVEAVRH+R V   +R +  M +DE+ T AKN
Sbjct: 129 CRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAMSEDELMTEAKN 188
Query: 206 IAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVRRA 265
           + APY+L++Q K+ G+LPVV+F            +MMQLG D            +P + A
Sbjct: 189 LGAPYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPAKFA 248
Query: 266 RAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVER 304
           +AIV+A T+++D  ++AE+S  LG AM GI+++++  E+
Sbjct: 249 KAIVEATTHFTDYKLIAELSKELGTAMKGIEISNLLPEQ 287

>pdb|1ZNN|A Chain A, Structure Of The Synthase Subunit Of Plp Synthase Length = 325

Iteration: 1
 Score =  325 bits (834), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 162/272 (59%), Positives = 205/272 (75%)
Query: 26  VKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIK 85
           VK G+A+M +GGVIMDVV  EQA+IAE AGA AVMALERVPADIRA GGVARM+DP +I+
Sbjct: 40  VKRGMAEMQKGGVIMDVVNAEQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPTVIE 99
Query: 86  QIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCG 145
           ++ ++V+IPVMAK RIGH+VEA++LEA+GVDY+DESEVLTPADEE HI+K  F VPFVCG
Sbjct: 100 EVMNAVSIPVMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCG 159
Query: 146 CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN 205
           CR+LGE+ RRI EGA+M+RTKGE GTGNIVEAVRH+R V   IR + NM +DE+   AK 
Sbjct: 160 CRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQ 219
Query: 206 IAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVRRA 265
           + AP +++ + K+LGRLPVV+F            +MM LG D            +P + A
Sbjct: 220 LGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYA 279
Query: 266 RAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDL 297
           RAIV+A T+Y D +++A +S GLG AM GID+
Sbjct: 280 RAIVEATTHYEDYELIAHLSKGLGGAMRGIDI 311

>pdb|2ISS|A Chain A, Structure Of The Plp Synthase Holoenzyme From Thermotoga Maritima Length = 313

Iteration: 1
 Score =  322 bits (825), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 157/283 (55%), Positives = 206/283 (72%)
Query: 20  KKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMS 79
           KK  + +K G A+M +GGVIMDV + EQA+IAEEAGA AVMALERVPADIR +GGVARM+
Sbjct: 24  KKGTWIIKKGFAEMFKGGVIMDVTSAEQAKIAEEAGAVAVMALERVPADIRKEGGVARMA 83
Query: 80  DPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFR 139
               I++I  +V+IPVMAK RIGH  EA+ILE +GVD++DESEVLTPAD+  HINKH F+
Sbjct: 84  SIAKIREIMEAVSIPVMAKVRIGHIAEAKILEELGVDFIDESEVLTPADDRFHINKHEFK 143
Query: 140 VPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEV 199
           VPFVCG R+LGE+LRRI EGAAMIRTKGEAGTGN+VEAV+H+R VM  I+ +  M+D+E+
Sbjct: 144 VPFVCGARDLGEALRRIAEGAAMIRTKGEAGTGNVVEAVKHMRRVMEQIKQVTKMEDEEL 203
Query: 200 FTFAKNIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXX 259
             + K I AP +L+ + K+LGRLPVV+F            +MM LG D            
Sbjct: 204 VAYGKEIGAPVELLREVKRLGRLPVVNFAAGGVATPADAALMMMLGADGVFVGSGIFKSK 263
Query: 260 DPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKV 302
           DP + A+A+V AVT + +P +L ++S  +GE M G+D+ +++V
Sbjct: 264 DPRKMAKAMVLAVTYWDNPRILLKISEDIGEPMRGLDVEELEV 306

>pdb|3FEM|A Chain A, Structure Of The Synthase Subunit Pdx1.1 (Snz1) Of Plp Synthase From Saccharomyces Cerevisiae Length = 297

Iteration: 1
 Score =  315 bits (807), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 152/278 (54%), Positives = 200/278 (71%), Gaps = 1/278 (0%)
Query: 24  FSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQL 83
           F +K GLAQML+GGVIMDVVTPEQA+IAE++GACAVMALE +PAD+R  G V RMSDP++
Sbjct: 6   FKIKSGLAQMLKGGVIMDVVTPEQAKIAEKSGACAVMALESIPADMRKSGKVCRMSDPKM 65
Query: 84  IKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFV 143
           IK I +SV+IPVMAK RIGHFVEAQI+EA+ VDY+DESEVLTPAD  +HI K  F+VPFV
Sbjct: 66  IKDIMNSVSIPVMAKVRIGHFVEAQIIEALEVDYIDESEVLTPADWTHHIEKDKFKVPFV 125
Query: 144 CGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNM-DDDEVFTF 202
           CG ++LGE+LRRI EGAAMIRTKGEAGTG++ EAV+H+R +  +I+  + +  +D++   
Sbjct: 126 CGAKDLGEALRRINEGAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKV 185
Query: 203 AKNIAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPV 262
           A+ +  P  L+    + G+LPVV+F            ++MQLGCD            +PV
Sbjct: 186 AEEMRVPVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPV 245
Query: 263 RRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDV 300
           R A A+V+A T++ +P  L EVS  LGE M G+ +  +
Sbjct: 246 RLATAVVEATTHFDNPSKLLEVSSDLGELMGGVSIESI 283

>pdb|2YZR|A Chain A, Crystal Structure Of Pyridoxine Biosynthesis Protein From Methanocaldococcus Jannaschii Length = 330

Iteration: 1
 Score =  306 bits (784), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 171/329 (51%), Positives = 207/329 (62%), Gaps = 38/329 (11%)
Query: 20  KKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMS 79
           KK    +K G A+M++ GV+MDV   EQA+IAEEAGA AVMALERVPADIRA GGVARMS
Sbjct: 2   KKGTDLLKKGFAKMVKHGVVMDVTNVEQAQIAEEAGAVAVMALERVPADIRAAGGVARMS 61
Query: 80  DPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFR 139
           DP LI++I  +V+IPVMAK RIGH  EA +LEAIGVD +DESEVLT AD   HI K  F 
Sbjct: 62  DPALIEEIMDAVSIPVMAKCRIGHTTEALVLEAIGVDMIDESEVLTQADPFFHIYKKKFN 121
Query: 140 VPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEV 199
           VPFVCG RNLGE++RRI EGAAMIRTKGEAGTGNIVEAVRH+R +   I  L+ M D+EV
Sbjct: 122 VPFVCGARNLGEAVRRIWEGAAMIRTKGEAGTGNIVEAVRHMRLMNEAIAQLQRMTDEEV 181
Query: 200 -------------------------------------FTFAKNIAAPYDLVMQTKQLGRL 222
                                                FT A+ I   Y+++++ K+LGRL
Sbjct: 182 YGVAKFYANRYAELAKTVREGMGLPATVLENEPIYEGFTLAEIIDGLYEVLLEVKKLGRL 241
Query: 223 PVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVRRARAIVQAVTNYSDPDVLA 282
           PVV+F            +MMQLG D            +P+ RARAIV+A  NY  PD++A
Sbjct: 242 PVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLERARAIVEATYNYDKPDIVA 301
Query: 283 EVSCGLGEAMVGIDLNDV-KVERYANRSD 310
           EVS  LGEAM GID+  + + E+   R D
Sbjct: 302 EVSKNLGEAMKGIDITQISEAEKMQYRGD 330

>pdb|4ADT|A Chain A, Crystal Structure Of Plasmodial Plp Synthase Length = 297

Iteration: 1
 Score =  306 bits (783), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 150/285 (52%), Positives = 200/285 (70%), Gaps = 3/285 (1%)
Query: 26  VKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIK 85
           +K G  +ML+GGVIMDV   EQA+IAE+AGA  VM LE +P+++R   GVAR  DP  I+
Sbjct: 12  LKHGWCEMLKGGVIMDVKNVEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVDPLKIE 71
Query: 86  QIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCG 145
           +I+  ++I V+AK RIGHFVEAQILE + VD +DESEVLT ADE NHINKH F+ PFVCG
Sbjct: 72  EIRKCISINVLAKVRIGHFVEAQILEELKVDMLDESEVLTMADEYNHINKHKFKTPFVCG 131
Query: 146 CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN 205
           C NLGE+LRRI EGA+MIRTKGEAGTGNI+EA++H+R+V  +I+ L ++D+ EV+ FAK 
Sbjct: 132 CTNLGEALRRISEGASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKK 191
Query: 206 IAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVRRA 265
           + AP DL++ T++L RLPVV+F            M MQLG D            +P + A
Sbjct: 192 LRAPIDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMA 251
Query: 266 RAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVERYANRSD 310
            +IV AV+N+++P +L  VS GLG+AM G   N     ++ N+S+
Sbjct: 252 SSIVMAVSNFNNPKILLNVSLGLGKAMHG---NTKVSNKWKNKSE 293

>pdb|4ADS|A Chain A, Crystal Structure Of Plasmodial Plp Synthase Complex Length = 282

Iteration: 1
 Score =  303 bits (775), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 147/269 (54%), Positives = 193/269 (71%)
Query: 26  VKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIK 85
           +K G  +ML+GGVIMDV   EQA+IAE+AGA  VM LE +P+++R   GVAR  DP  I+
Sbjct: 10  LKHGWCEMLKGGVIMDVKNVEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVDPLKIE 69
Query: 86  QIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCG 145
           +I+  ++I V+AK RIGHFVEAQILE + VD +DESEVLT ADE NHINKH F+ PFVCG
Sbjct: 70  EIRKCISINVLAKVRIGHFVEAQILEELKVDMLDESEVLTMADEYNHINKHKFKTPFVCG 129
Query: 146 CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN 205
           C NLGE+LRRI EGA+MIRTKGEAGTGNI+EA++H+R+V  +I+ L ++D+ EV+ FAK 
Sbjct: 130 CTNLGEALRRISEGASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSLDESEVYNFAKK 189
Query: 206 IAAPYDLVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVRRA 265
           + AP DL++ T++L RLPVV+F            M MQLG D            +P + A
Sbjct: 190 LRAPIDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMA 249
Query: 266 RAIVQAVTNYSDPDVLAEVSCGLGEAMVG 294
            +IV AV+N+++P +L  VS GLG+AM G
Sbjct: 250 SSIVMAVSNFNNPKILLNVSLGLGKAMHG 278

>pdb|3O05|A Chain A, Crystal Structure Of Yeast Pyridoxal 5-Phosphate Synthase Snz1 Complxed With Substrate Plp Length = 291

Iteration: 1
 Score =  302 bits (773), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 146/269 (54%), Positives = 193/269 (71%), Gaps = 1/269 (0%)
Query: 33  MLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT 92
           ML+GGVIMDVVTPEQA+IAE++GACAVMALE +PAD+R  G V RMSDP++IK I +SV+
Sbjct: 9   MLKGGVIMDVVTPEQAKIAEKSGACAVMALESIPADMRKSGKVCRMSDPKMIKDIMNSVS 68
Query: 93  IPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGES 152
           IPVMAK RIGHFVEAQI+EA+ VDY+DESEVLTPAD  +HI K  F+VPFVCG ++LGE+
Sbjct: 69  IPVMAKVRIGHFVEAQIIEALEVDYIDESEVLTPADWTHHIEKDKFKVPFVCGAKDLGEA 128
Query: 153 LRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNM-DDDEVFTFAKNIAAPYD 211
           LRRI EGAAMIRTKGEAGTG++ EAV+H+R +  +I+  + +  +D++   A+ +  P  
Sbjct: 129 LRRINEGAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKVAEEMRVPVS 188
Query: 212 LVMQTKQLGRLPVVHFXXXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVRRARAIVQA 271
           L+    + G+LPVV+F            ++MQLGCD            +PVR A A+V+A
Sbjct: 189 LLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEA 248
Query: 272 VTNYSDPDVLAEVSCGLGEAMVGIDLNDV 300
            T++ +P  L EVS  LGE M G+ +  +
Sbjct: 249 TTHFDNPSKLLEVSSDLGELMGGVSIESI 277

>pdb|4FIQ|A Chain A, Crystal Structure Of Pyridoxal Biosynthesis Lyase Pdxs From Pyrococcus Horikoshii Length = 335

Iteration: 1
 Score =  289 bits (740), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 156/314 (49%), Positives = 200/314 (63%), Gaps = 37/314 (11%)
Query: 26  VKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIK 85
           +K G A+M++GGVIMDV   EQARIAEEAGA AVMAL +VPADIR  GGVARM+  + I+
Sbjct: 15  LKRGFAKMVKGGVIMDVTNAEQARIAEEAGAVAVMALHKVPADIRKAGGVARMAPVEKIQ 74
Query: 86  QIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCG 145
           +I  +VTIPVMAK RIGH  EA+ILEA+GVD +DESEVLTPAD   HI K  F  PFVCG
Sbjct: 75  EIMDAVTIPVMAKCRIGHEAEARILEALGVDMIDESEVLTPADPFFHIYKKKFTAPFVCG 134
Query: 146 CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN 205
            RNLGE++RRI EGAAMIRTKGEAGTGNI+EAVRHVR V  +IR+++ M D+E++  A+ 
Sbjct: 135 ARNLGEAVRRIWEGAAMIRTKGEAGTGNIIEAVRHVRLVNENIRLIQRMTDEEIYGVAEK 194
Query: 206 IAAP-------------------------------------YDLVMQTKQLGRLPVVHFX 228
            A P                                     Y ++++ K+LGRLPVV+F 
Sbjct: 195 FAEPYLRLAFSVKEISGLPKRVLENEPIYEGFTYREIVEDIYKILLEIKKLGRLPVVNFA 254
Query: 229 XXXXXXXXXXXMMMQLGCDXXXXXXXXXXXXDPVRRARAIVQAVTNYSDPDVLAEVSCGL 288
                      +MM +G D            +P + ARAIV+AV ++ +PDVLAE+S  +
Sbjct: 255 AGGVATPADAALMMAMGMDGVFVGSGIFKSSNPPKMARAIVEAVNHWDEPDVLAEISREI 314
Query: 289 GEAMVGIDLNDVKV 302
           GE M G  + +++V
Sbjct: 315 GEPMRGQAIEELQV 328

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	310
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	1e-138
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	1e-137
3o07_A	291	Pyridoxine biosynthesis protein SNZ1; (beta/alpha)	1e-135
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	1e-134
2yzr_A	330	Pyridoxal biosynthesis lyase PDXS; redox protein,	1e-127
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	1e-19
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	6e-17
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	9e-09
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	5e-08
1wv2_A	265	Thiazole moeity, thiazole biosynthesis protein THI	6e-08
2htm_A	268	Thiazole biosynthesis protein THIG; thiamin biosyn	6e-08
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	3e-07
1hg3_A	225	Triosephosphate isomerase; thermostability, tetram	1e-04
1w0m_A	226	TIM, triosephosphate isomerase; glycolysis, glucon	3e-04
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	5e-04
3exr_A	221	RMPD (hexulose-6-phosphate synthase); beta barrel,	6e-04
2h6r_A	219	Triosephosphate isomerase; beta-alpha barrel; 2.30	7e-04
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	8e-04

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A Length = 297

 Score =  391 bits (1006), Expect = e-138
 Identities = 168/289 (58%), Positives = 220/289 (76%)

Query: 15  IYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGG 74
           + +        +K G  +ML+GGVIMDV   EQA+IAE+AGA  VM LE +P+++R   G
Sbjct: 1   MRDYADNDSILLKHGWCEMLKGGVIMDVKNVEQAKIAEKAGAIGVMILENIPSELRNTDG 60

Query: 75  VARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHIN 134
           VAR  DP  I++I+  ++I V+AK RIGHFVEAQILE + VD +DESEVLT ADE NHIN
Sbjct: 61  VARSVDPLKIEEIRKCISINVLAKVRIGHFVEAQILEELKVDMLDESEVLTMADEYNHIN 120

Query: 135 KHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNM 194
           KH F+ PFVCGC NLGE+LRRI EGA+MIRTKGEAGTGNI+EA++H+R+V  +I+ L ++
Sbjct: 121 KHKFKTPFVCGCTNLGEALRRISEGASMIRTKGEAGTGNIIEAIKHIRTVNNEIKYLCSL 180

Query: 195 DDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254
           D+ EV+ FAK + AP DL++ T++L RLPVV+FAAGG+ATPADAAM MQLG DGVFVGSG
Sbjct: 181 DESEVYNFAKKLRAPIDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSG 240

Query: 255 VFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVE 303
           +F+S +P + A +IV AV+N+++P +L  VS GLG+AM G      K +
Sbjct: 241 IFESENPQKMASSIVMAVSNFNNPKILLNVSLGLGKAMHGNTKVSNKWK 289

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* Length = 297

 Score =  390 bits (1002), Expect = e-137
 Identities = 206/293 (70%), Positives = 247/293 (84%), Gaps = 1/293 (0%)

Query: 17  ETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVA 76
              +K  F +K G A+M +GGVIMDV TPEQA IAEEAGA AVMALERVPADIRAQGGVA
Sbjct: 3   GGMEKGTFQIKTGFAEMFKGGVIMDVTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVA 62

Query: 77  RMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKH 136
           RMSDP++IK+I ++V+IPVMAK RIGHFVEA ILEAIGVD++DESEVLTPADEE+HI+K 
Sbjct: 63  RMSDPKIIKEIMAAVSIPVMAKVRIGHFVEAMILEAIGVDFIDESEVLTPADEEHHIDKW 122

Query: 137 NFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDD 196
            F+VPFVCG RNLGE+LRRI EGAAMIRTKGEAGTGN+VEAVRH R++  +IR ++++ +
Sbjct: 123 KFKVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHARTMWKEIRYVQSLRE 182

Query: 197 DEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF 256
           DE+  +AK I AP++LV      GRLPVV+FAAGG+ATPADAA+MM LG DGVFVGSG+F
Sbjct: 183 DELMAYAKEIGAPFELVKWVHDHGRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIF 242

Query: 257 KSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVE-RYANR 308
           KSGDP +RARAIV+AV +Y+DP+VLAEVS  LGE MVGI+L+ +K E R A R
Sbjct: 243 KSGDPRKRARAIVRAVAHYNDPEVLAEVSEDLGEPMVGINLDQLKEEERLAKR 295

>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A Length = 291

 Score =  384 bits (987), Expect = e-135
 Identities = 169/284 (59%), Positives = 216/284 (76%), Gaps = 1/284 (0%)

Query: 26  VKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIK 85
                  ML+GGVIMDVVTPEQA+IAE++GACAVMALE +PAD+R  G V RMSDP++IK
Sbjct: 2   HHHHHHGMLKGGVIMDVVTPEQAKIAEKSGACAVMALESIPADMRKSGKVCRMSDPKMIK 61

Query: 86  QIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCG 145
            I +SV+IPVMAK RIGHFVEAQI+EA+ VDY+DESEVLTPAD  +HI K  F+VPFVCG
Sbjct: 62  DIMNSVSIPVMAKVRIGHFVEAQIIEALEVDYIDESEVLTPADWTHHIEKDKFKVPFVCG 121

Query: 146 CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDD-DEVFTFAK 204
            ++LGE+LRRI EGAAMIRTKGEAGTG++ EAV+H+R +  +I+  + +   D++   A+
Sbjct: 122 AKDLGEALRRINEGAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKVAE 181

Query: 205 NIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRR 264
            +  P  L+    + G+LPVV+FAAGGVATPADAA++MQLGCDGVFVGSG+FKS +PVR 
Sbjct: 182 EMRVPVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRL 241

Query: 265 ARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVERYANR 308
           A A+V+A T++ +P  L EVS  LGE M G+ +  +       R
Sbjct: 242 ATAVVEATTHFDNPSKLLEVSSDLGELMGGVSIESISHASNGVR 285

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A Length = 305

 Score =  382 bits (983), Expect = e-134
 Identities = 184/295 (62%), Positives = 241/295 (81%), Gaps = 1/295 (0%)

Query: 15  IYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGG 74
           +    +     VK G+A+M +GGVIMDV+  EQA+IAEEAGA AVMALERVPADIRA GG
Sbjct: 1   MASMAQTGTERVKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMALERVPADIRAAGG 60

Query: 75  VARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHIN 134
           VARM+DP +++++ ++V+IPVMAKARIGH VEA++LEA+GVDY+DESEVLTPADEE H+N
Sbjct: 61  VARMADPTIVEEVMNAVSIPVMAKARIGHIVEARVLEAMGVDYIDESEVLTPADEEFHLN 120

Query: 135 KHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNM 194
           K+ + VPFVCGCR+LGE+ RRI EGA+M+RTKGE GTGNIVEAVRH+R V   +R +  M
Sbjct: 121 KNEYTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQVRKVVAM 180

Query: 195 DDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG 254
            +DE+ T AKN+ APY+L++Q K+ G+LPVV+FAAGGVATPADAA+MMQLG DGVFVGSG
Sbjct: 181 SEDELMTEAKNLGAPYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSG 240

Query: 255 VFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKV-ERYANR 308
           +FKS +P + A+AIV+A T+++D  ++AE+S  LG AM GI+++++   +R   R
Sbjct: 241 IFKSDNPAKFAKAIVEATTHFTDYKLIAELSKELGTAMKGIEISNLLPEQRMQER 295

>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} Length = 330

 Score =  366 bits (939), Expect = e-127
 Identities = 192/329 (58%), Positives = 228/329 (69%), Gaps = 38/329 (11%)

Query: 20  KKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMS 79
           KK    +K G A+M++ GV+MDV   EQA+IAEEAGA AVMALERVPADIRA GGVARMS
Sbjct: 2   KKGTDLLKKGFAKMVKHGVVMDVTNVEQAQIAEEAGAVAVMALERVPADIRAAGGVARMS 61

Query: 80  DPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFR 139
           DP LI++I  +V+IPVMAK RIGH  EA +LEAIGVD +DESEVLT AD   HI K  F 
Sbjct: 62  DPALIEEIMDAVSIPVMAKCRIGHTTEALVLEAIGVDMIDESEVLTQADPFFHIYKKKFN 121

Query: 140 VPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEV 199
           VPFVCG RNLGE++RRI EGAAMIRTKGEAGTGNIVEAVRH+R +   I  L+ M D+EV
Sbjct: 122 VPFVCGARNLGEAVRRIWEGAAMIRTKGEAGTGNIVEAVRHMRLMNEAIAQLQRMTDEEV 181

Query: 200 FTFAKN-------------------------------------IAAPYDLVMQTKQLGRL 222
           +  AK                                      I   Y+++++ K+LGRL
Sbjct: 182 YGVAKFYANRYAELAKTVREGMGLPATVLENEPIYEGFTLAEIIDGLYEVLLEVKKLGRL 241

Query: 223 PVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLA 282
           PVV+FAAGGVATPADAA+MMQLG DGVFVGSG+FKS +P+ RARAIV+A  NY  PD++A
Sbjct: 242 PVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLERARAIVEATYNYDKPDIVA 301

Query: 283 EVSCGLGEAMVGIDLNDVKV-ERYANRSD 310
           EVS  LGEAM GID+  +   E+   R D
Sbjct: 302 EVSKNLGEAMKGIDITQISEAEKMQYRGD 330

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 Length = 234

 Score = 85.0 bits (210), Expect = 1e-19
 Identities = 43/268 (16%), Positives = 85/268 (31%), Gaps = 60/268 (22%)

Query: 27  KVGLAQMLRGGVIMDV-VTPEQARIAEEAGACAVMALERVPADIRAQGGVA--RMSDPQL 83
           K  L + L+GG+I+     P +   +E  G   +MA          + G    R +  + 
Sbjct: 7   KEKLMEQLKGGIIVSCQALPGEPLYSETGGIMPLMAKAAQ------EAGAVGIRANSVRD 60

Query: 84  IKQIKSSVTIPVMAKARIGH----------FVEAQILEAIGVDYV-------DESEVLTP 126
           IK+I++   +P++   +  +            E   L A+ +  +       D  + L  
Sbjct: 61  IKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAVIAMDCTKRDRHDGLDI 120

Query: 127 ADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMG 186
           A     + +       +       E L   + G   + T     T    +          
Sbjct: 121 ASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQE--------- 171

Query: 187 DIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGC 246
                                    L+    + G + V+  A G + +P +A  +  LG 
Sbjct: 172 -------------------AGPDVALIEALCKAG-IAVI--AEGKIHSPEEAKKINDLGV 209

Query: 247 DGVFVGSGVFKSGDPVRRARAIVQAVTN 274
            G+ VG  +     P   A   ++A+ +
Sbjct: 210 AGIVVGGAIT---RPKEIAERFIEALKS 234

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} Length = 232

 Score = 77.4 bits (190), Expect = 6e-17
 Identities = 45/264 (17%), Positives = 81/264 (30%), Gaps = 57/264 (21%)

Query: 27  KVGLAQMLRGGVIMDVVTPEQARIAE---EAGACAVMALERVPADIRAQGGVARMSDPQL 83
           ++       GG+I+      Q        +    A MAL    A  +A     R+     
Sbjct: 9   QLDKNIAASGGLIVSC----QPVPGSPLDKPEIVAAMAL----AAEQAGAVAVRIEGIDN 60

Query: 84  IKQIKSSVTIPVMAKARIGH----------FVEAQILEAIGVDYV--DESEVLTPADEEN 131
           ++  +S V++P++   +               +   L   G   +  D +    P   E 
Sbjct: 61  LRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAIIAVDGTARQRPVAVEA 120

Query: 132 HINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRV 190
            + + H+  +  +  C ++ + L   R GA +I T     T                   
Sbjct: 121 LLARIHHHHLLTMADCSSVDDGLACQRLGADIIGTTMSGYTT------------------ 162

Query: 191 LRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVF 250
                                LV      G   V+  A G   +PA AA  ++ G   V 
Sbjct: 163 -----------PDTPEEPDLPLVKALHDAG-CRVI--AEGRYNSPALAAEAIRYGAWAVT 208

Query: 251 VGSGVFKSGDPVRR-ARAIVQAVT 273
           VGS + +          A+ +A +
Sbjct: 209 VGSAITRLEHICGWYNDALKKAAS 232

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} Length = 229

 Score = 53.9 bits (129), Expect = 9e-09
 Identities = 41/251 (16%), Positives = 79/251 (31%), Gaps = 50/251 (19%)

Query: 27  KVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQ 86
           ++  +    GG+I+       + + +     A MA     A   A     R+   + ++ 
Sbjct: 9   RLEQSVHENGGLIVSCQPVPGSPMDKPEIVAA-MAQ----AAASAGAVAVRIEGIENLRT 63

Query: 87  IKSSVTIPVMAKARIGH----------FVEAQILEAIGVDYV--DESEVLTPADEENHIN 134
           ++  +++P++   +               +   L   G D +  D S    P D ++ + 
Sbjct: 64  VRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADIIAFDASFRSRPVDIDSLLT 123

Query: 135 KHNFRVPFVCG-CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRN 193
           +           C  + E +   ++G   I T     TG I                   
Sbjct: 124 RIRLHGLLAMADCSTVNEGISCHQKGIEFIGTTLSGYTGPIT------------------ 165

Query: 194 MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253
                       +     +V Q    G   V+  A G   TPA AA  ++ G   V VGS
Sbjct: 166 -----------PVEPDLAMVTQLSHAG-CRVI--AEGRYNTPALAANAIEHGAWAVTVGS 211

Query: 254 GVFKSGDPVRR 264
            + +     + 
Sbjct: 212 AITRIEHICQW 222

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A Length = 264

 Score = 51.8 bits (125), Expect = 5e-08
 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 2/52 (3%)

Query: 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272
           ++PV+  A  G+ +P DAA  M+LG DGV + + V  + DPV+ ARA+  AV
Sbjct: 178 KVPVIVDA--GIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMKLAV 227

>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 Length = 265

 Score = 51.8 bits (125), Expect = 6e-08
 Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 2/52 (3%)

Query: 221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272
           ++PV+  A  GV T +DAA+ M+LGC+ V + + +  + DPV  A A+  A+
Sbjct: 187 KVPVLVDA--GVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAI 236

>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} Length = 268

 Score = 51.8 bits (125), Expect = 6e-08
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 206 IAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRR 264
           +     L +  ++     PVV  A  G+  P+ AA +M+LG D V V + + ++ DP   
Sbjct: 162 VRTRALLELFAREKASLPPVVVDA--GLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAM 219

Query: 265 ARAIVQAV 272
           A A   AV
Sbjct: 220 AEAFRLAV 227

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 Length = 223

 Score = 49.6 bits (118), Expect = 3e-07
 Identities = 39/248 (15%), Positives = 66/248 (26%), Gaps = 64/248 (25%)

Query: 43  VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG 102
           +  + A  A E GA  +                 R +  + I  IK +V +PV+   +  
Sbjct: 24  IMSKMALAAYEGGAVGI-----------------RANTKEDILAIKETVDLPVIGIVKRD 66

Query: 103 H----------FVEAQILEAIGVDYV------DESEVLTPADEENHINKHNFRVPFVCGC 146
           +            E   L     + +       +    T  +  ++I  H   V  +   
Sbjct: 67  YDHSDVFITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADI 126

Query: 147 RNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNI 206
             + E+    R G   I T     T                                   
Sbjct: 127 ATVEEAKNAARLGFDYIGTTLHGYTSYTQGQ--------------------------LLY 160

Query: 207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRAR 266
              +  +    Q     V+  A G V TP     +M LG     VG  +     P    +
Sbjct: 161 QNDFQFLKDVLQSVDAKVI--AEGNVITPDMYKRVMDLGVHCSVVGGAI---TRPKEITK 215

Query: 267 AIVQAVTN 274
             VQ + +
Sbjct: 216 RFVQVMED 223

>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 Length = 225

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 230 GGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272
            G++T  D    ++LG  GV + SGV K+ DP +    +V  +
Sbjct: 183 AGISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAIWDLVSGI 225

>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 Length = 226

 Score = 40.3 bits (95), Expect = 3e-04
 Identities = 11/47 (23%), Positives = 22/47 (46%)

Query: 229 AGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY 275
             G+ +  D A  ++LG  GV + S   K+ DP  +   + + ++  
Sbjct: 179 GAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIVELAKPLSEL 225

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A Length = 262

 Score = 39.8 bits (94), Expect = 5e-04
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 17/74 (22%)

Query: 211 DLVMQTKQLGRLPVVHFAAG-GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV 269
            L+ + K++   PV   A G G++ P     + Q G DGV +GS             A+V
Sbjct: 191 SLIQEVKKVTNKPV---AVGFGISKPEHVKQIAQWGADGVIIGS-------------AMV 234

Query: 270 QAVTNYSDPDVLAE 283
           + +   + P     
Sbjct: 235 RQLGEAASPKQGLR 248

>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} PDB: 3exs_A* 3ext_A Length = 221

 Score = 39.6 bits (92), Expect = 6e-04
 Identities = 10/59 (16%), Positives = 21/59 (35%), Gaps = 1/59 (1%)

Query: 217 KQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY 275
           K+L  +       GG+ +     +   +       G G+ ++ +P   ARA    +   
Sbjct: 162 KKLIEMGFRVSVTGGL-SVDTLKLFEGVDVFTFIAGRGITEAKNPAGAARAFKDEIKRI 219

>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} Length = 219

 Score = 39.1 bits (92), Expect = 7e-04
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query: 229 AGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272
             G++   D    + LG +GV + SGV K+ +     R +++ +
Sbjct: 176 GAGISKGEDVKAALDLGAEGVLLASGVVKAKNVEEAIRELIKFI 219

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* Length = 227

 Score = 39.1 bits (92), Expect = 8e-04
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 216 TKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY 275
            +Q   +P+V    GG+ T  +AA ++Q G DGV + S + ++ DP   AR   + +  Y
Sbjct: 167 RRQGISIPIV--GIGGI-TIDNAAPVIQAGADGVSMISAISQAEDPESAARKFREEIQTY 223

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	310
3o07_A	291	Pyridoxine biosynthesis protein SNZ1; (beta/alpha)	100.0
2yzr_A	330	Pyridoxal biosynthesis lyase PDXS; redox protein,	100.0
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	100.0
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	100.0
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	100.0
4a29_A	258	Engineered retro-aldol enzyme RA95.0; de novo prot	100.0
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	100.0
1i4n_A	251	Indole-3-glycerol phosphate synthase; thermostable	100.0
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	99.98
1pii_A	452	N-(5'phosphoribosyl)anthranilate isomerase; bifunc	99.98
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	99.96
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	99.87
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	99.86
3o63_A	243	Probable thiamine-phosphate pyrophosphorylase; thi	99.77
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	99.77
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	99.76
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	99.76
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	99.75
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	99.74
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	99.72
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	99.72
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	99.68
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	99.67
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	99.67
3nl6_A	540	Thiamine biosynthetic bifunctional enzyme; thiamin	99.64
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	99.63
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	99.62
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	99.58
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	99.58
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	99.57
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	99.57
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	99.56
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	99.56
1yad_A	221	Regulatory protein TENI; TIM barrel, transcription	99.56
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	99.56
3ceu_A	210	Thiamine phosphate pyrophosphorylase; TIM barrel-l	99.55
2agk_A	260	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	99.55
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	99.55
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	99.54
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	99.52
2h6r_A	219	Triosephosphate isomerase; beta-alpha barrel; 2.30	99.52
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	99.51
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	99.5
1wv2_A	265	Thiazole moeity, thiazole biosynthesis protein THI	99.5
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	99.48
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	99.48
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	99.48
1w0m_A	226	TIM, triosephosphate isomerase; glycolysis, glucon	99.48
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	99.47
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	99.46
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	99.46
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	99.46
2htm_A	268	Thiazole biosynthesis protein THIG; thiamin biosyn	99.45
1hg3_A	225	Triosephosphate isomerase; thermostability, tetram	99.45
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	99.44
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	99.44
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	99.43
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	99.43
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	99.43
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	99.42
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	99.42
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	99.41
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	99.4
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	99.38
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	99.37
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	99.37
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	99.34
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	99.33
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	99.32
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	99.29
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	99.27
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	99.24
1ujp_A	271	Tryptophan synthase alpha chain; riken structural	99.23
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	99.16
1viz_A	240	PCRB protein homolog; structural genomics, unknown	99.15
3tha_A	252	Tryptophan synthase alpha chain; structural genomi	99.15
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	99.14
2p10_A	286	MLL9387 protein; putative phosphonopyruvate hydrol	99.08
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	99.06
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	99.06
2f6u_A	234	GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy	99.03
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	99.02
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.0
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	98.93
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	98.93
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.93
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	98.9
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	98.88
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	98.87
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	98.86
1q6o_A	216	Humps, 3-keto-L-gulonate 6-phosphate decarboxylase	98.85
3vzx_A	228	Heptaprenylglyceryl phosphate synthase; biosynthes	98.83
2uva_G	2060	Fatty acid synthase beta subunits; fungal, dehydra	98.82
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.82
3w01_A	235	Heptaprenylglyceryl phosphate synthase; biosynthes	98.81
3zwt_A	367	Dihydroorotate dehydrogenase (quinone), mitochond;	98.81
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	98.81
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	98.79
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	98.79
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	98.77
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.77
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	98.76
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	98.75
2czd_A	208	Orotidine 5'-phosphate decarboxylase; pyrimidine b	98.75
3exr_A	221	RMPD (hexulose-6-phosphate synthase); beta barrel,	98.74
3oix_A	345	Putative dihydroorotate dehydrogenase; dihydrooro	98.74
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	98.74
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	98.73
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	98.73
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	98.73
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	98.72
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	98.72
1to3_A	304	Putative aldolase YIHT; beta-alpha barrel, structu	98.71
4ef8_A	354	Dihydroorotate dehydrogenase; phenyl isothiocyanat	98.71
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	98.67
3i65_A	415	Dihydroorotate dehydrogenase homolog, mitochondria	98.62
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.62
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	98.6
2uv8_G	2051	Fatty acid synthase subunit beta (FAS1); fatty aci	98.6
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	98.56
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	98.56
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	98.49
1vcf_A	332	Isopentenyl-diphosphate delta-isomerase; TIM barre	98.47
1tv5_A	443	Dhodehase, dihydroorotate dehydrogenase homolog, m	98.46
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.44
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	98.4
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	98.37
3cwo_X	237	Beta/alpha-barrel protein based on 1THF and 1TMY;	98.36
3kru_A	343	NADH:flavin oxidoreductase/NADH oxidase; homotetra	98.35
1x1o_A	286	Nicotinate-nucleotide pyrophosphorylase; transfera	98.33
1v5x_A	203	PRA isomerase, phosphoribosylanthranilate isomeras	98.33
2r14_A	377	Morphinone reductase; H-tunnelling, flavoprotein,	98.29
1nsj_A	205	PRAI, phosphoribosyl anthranilate isomerase; therm	98.29
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	98.25
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	98.25
4aaj_A	228	N-(5'-phosphoribosyl)anthranilate isomerase; alpha	98.23
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.23
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	98.21
3l5a_A	419	NADH/flavin oxidoreductase/NADH oxidase; OLD yello	98.19
1o4u_A	285	Type II quinolic acid phosphoribosyltransferase; s	98.15
2b7n_A	273	Probable nicotinate-nucleotide pyrophosphorylase;	98.14
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	98.11
1qap_A	296	Quinolinic acid phosphoribosyltransferase; glycosy	98.06
3iwp_A	287	Copper homeostasis protein CUTC homolog; conserved	98.05
2hsa_B	402	12-oxophytodienoate reductase 3; alpha beta 8 barr	98.04
3m47_A	228	Orotidine 5'-phosphate decarboxylase; orotidine 5'	98.03
3gka_A	361	N-ethylmaleimide reductase; decode biostructures,	98.03
1qpo_A	284	Quinolinate acid phosphoribosyl transferase; type	98.02
3tqv_A	287	Nicotinate-nucleotide pyrophosphorylase; glycosylt	98.02
4ab4_A	362	Xenobiotic reductase B; oxidoreductase, OLD yellow	98.0
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	97.99
1icp_A	376	OPR1, 12-oxophytodienoate reductase 1; beta-alpha-	97.99
2jbm_A	299	Nicotinate-nucleotide pyrophosphorylase; NAD, enzy	97.98
1eix_A	245	Orotidine 5'-monophosphate decarboxylase; alpha-be	97.96
2yyu_A	246	Orotidine 5'-phosphate decarboxylase; TIM barrel,	97.93
3vk5_A	286	MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S	97.93
3gnn_A	298	Nicotinate-nucleotide pyrophosphorylase; decode bi	97.92
1dbt_A	239	Orotidine 5'-phosphate decarboxylase; UMP, TIM bar	97.91
3l0g_A	300	Nicotinate-nucleotide pyrophosphorylase; ssgcid, N	97.9
3paj_A	320	Nicotinate-nucleotide pyrophosphorylase, carboxyl;	97.9
3c2e_A	294	Nicotinate-nucleotide pyrophosphorylase; qprtase,	97.89
3kts_A	192	Glycerol uptake operon antiterminator regulatory;	97.84
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.83
3oa3_A	288	Aldolase; structural genomics, seattle structural	97.82
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	97.8
1pii_A	452	N-(5'phosphoribosyl)anthranilate isomerase; bifunc	97.8
3ve9_A	215	Orotidine-5'-phosphate decarboxylase; TIM barrel f	97.76
3ru6_A	303	Orotidine 5'-phosphate decarboxylase; structural g	97.73
4dbe_A	222	Orotidine 5'-phosphate decarboxylase; TIM barrel,	97.71
1vqt_A	213	Orotidine 5'-phosphate decarboxylase; TM0332, stru	97.7
1twd_A	256	Copper homeostasis protein CUTC; TIM-like protein,	97.69
3ngj_A	239	Deoxyribose-phosphate aldolase; lyase, structural	97.65
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	97.64
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	97.61
1ub3_A	220	Aldolase protein; schiff base, deoxyribose phospha	97.58
3r12_A	260	Deoxyribose-phosphate aldolase; TIM beta/alpha-bar	97.57
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	97.57
3tfx_A	259	Orotidine 5'-phosphate decarboxylase; PSI-biology,	97.55
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	97.48
3ndo_A	231	Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid	97.47
1ofd_A	1520	Ferredoxin-dependent glutamate synthase 2; oxidore	97.47
3fok_A	307	Uncharacterized protein CGL0159; CGL0159 ,brevibac	97.45
3tjx_A	354	Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh	97.45
2bdq_A	224	Copper homeostasis protein CUTC; alpha beta protei	97.44
1ea0_A	1479	Glutamate synthase [NADPH] large chain; oxidoreduc	97.41
3ih1_A	305	Methylisocitrate lyase; alpha-beta structure, TIM-	97.4
1n7k_A	234	Deoxyribose-phosphate aldolase; A.pernix, tetramer	97.32
3b8i_A	287	PA4872 oxaloacetate decarboxylase; alpha/beta barr	97.27
1vkf_A	188	Glycerol uptake operon antiterminator-related Pro;	97.25
3aty_A	379	Tcoye, prostaglandin F2A synthase; alpha/beta barr	97.22
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	97.21
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	97.21
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	97.19
3tr2_A	239	Orotidine 5'-phosphate decarboxylase; purines, pyr	97.16
1xg4_A	295	Probable methylisocitrate lyase; 2-methylisocitrat	97.16
4a3u_A	358	NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET	97.15
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	97.14
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	97.12
3q94_A	288	Fructose-bisphosphate aldolase, class II; structur	97.08
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	97.08
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	96.98
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	96.97
1gvf_A	286	Tagatose-bisphosphate aldolase AGAY; lyase, zinc.;	96.93
3ldv_A	255	Orotidine 5'-phosphate decarboxylase; structural g	96.91
3eoo_A	298	Methylisocitrate lyase; seattle structural genomic	96.91
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	96.89
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	96.89
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	96.89
2qiw_A	255	PEP phosphonomutase; structural genomics, joint ce	96.87
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	96.87
2ze3_A	275	DFA0005; organic waste LEFT-OVER decomposition, al	96.86
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	96.85
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	96.83
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	96.8
1p1x_A	260	Deoxyribose-phosphate aldolase; alpha-beta barrel,	96.65
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	96.65
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	96.65
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	96.63
1wv2_A	265	Thiazole moeity, thiazole biosynthesis protein THI	96.62
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	96.58
2a4a_A	281	Deoxyribose-phosphate aldolase; lyase, TIM beta/al	96.56
1vcv_A	226	Probable deoxyribose-phosphate aldolase; DERA, hyp	96.55
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	96.55
3iv3_A	332	Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p	96.5
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	96.49
3lye_A	307	Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre	96.47
1rvg_A	305	Fructose-1,6-bisphosphate aldolase; class II aldol	96.45
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	96.42
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	96.36
2v5j_A	287	2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; l	96.34
1zlp_A	318	PSR132, petal death protein; TIM-barrel, helix swa	96.21
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	96.18
2agk_A	260	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	96.17
3qw3_A	255	Orotidine-5-phosphate decarboxylase/orotate phosph	96.17
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	96.17
3n9r_A	307	Fructose-bisphosphate aldolase; FBP aldolase, clas	96.15
2isw_A	323	Putative fructose-1,6-bisphosphate aldolase; class	96.11
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	96.08
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	96.06
1s2w_A	295	Phosphoenolpyruvate phosphomutase; phosphonopyruva	96.04
4eiv_A	297	Deoxyribose-phosphate aldolase; chemotherapy, brai	96.03
3o07_A	291	Pyridoxine biosynthesis protein SNZ1; (beta/alpha)	95.98
1yya_A	250	Triosephosphate isomerase; riken structural genomi	95.97
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	95.9
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	95.9
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	95.89
2i9e_A	259	Triosephosphate isomerase; 2.00A {Tenebrio molitor	95.89
3r8r_A	212	Transaldolase; pentose phosphate pathway, schiff b	95.85
1aw2_A	256	Triosephosphate isomerase; psychrophilic, vibrio m	95.79
3s1x_A	223	Probable transaldolase; alpha-beta barrel, conform	95.72
3vk5_A	286	MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S	95.68
3qw4_B	453	UMP synthase; N-terminal orotidine monophosphate d	95.67
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	95.65
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	95.49
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	95.45
1tre_A	255	Triosephosphate isomerase; intramolecular oxidored	95.43
1vcf_A	332	Isopentenyl-diphosphate delta-isomerase; TIM barre	95.41
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	95.36
2ffc_A	353	Orotidine 5-monophosphate decarboxylase; PV-PF10_0	95.34
2hjp_A	290	Phosphonopyruvate hydrolase; phosporus-Ca cleavage	95.33
2jgq_A	233	Triosephosphate isomerase; glycolysis, pentose shu	95.33
1nvm_A	345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	95.3
3fa4_A	302	2,3-dimethylmalate lyase; alpha/beta barrel, helix	95.28
2htm_A	268	Thiazole biosynthesis protein THIG; thiamin biosyn	95.25
1dxe_A	256	2-dehydro-3-deoxy-galactarate aldolase; class II a	95.24
3l21_A	304	DHDPS, dihydrodipicolinate synthase; DAPA, dimer,	95.11
2ftp_A	302	Hydroxymethylglutaryl-COA lyase; structural genomi	95.1
1aj0_A	282	DHPS, dihydropteroate synthase; antibiotic, resist	95.09
1mo0_A	275	TIM, triosephosphate isomerase; structural genomic	95.05
3vav_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	95.03
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	95.03
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	94.95
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	94.91
2yc6_A	257	Triosephosphate isomerase; glycolysis; HET: PGA; 1	94.91
1r2r_A	248	TIM, triosephosphate isomerase; closed loop confor	94.9
1o5x_A	248	TIM, triosephosphate isomerase; 2- phosphoglycerat	94.88
3pm6_A	306	Putative fructose-bisphosphate aldolase; structura	94.87
2i1o_A	398	Nicotinate phosphoribosyltransferase; ZIN ION, zin	94.84
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	94.82
1xky_A	301	Dihydrodipicolinate synthase; TIM barrel, , lysine	94.78
2j27_A	250	Triosephosphate isomerase glycosomal; TIM, 2PG, LO	94.74
3tjl_A	407	NADPH dehydrogenase; OLD yellow enzyme, flavin mon	94.67
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	94.66
2btm_A	252	TIM, protein (triosephosphate isomerase); thermoph	94.65
3cpr_A	304	Dihydrodipicolinate synthetase; (beta/alpha)8-barr	94.63
1izc_A	339	Macrophomate synthase intermolecular diels-aldera;	94.63
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	94.58
3flu_A	297	DHDPS, dihydrodipicolinate synthase; TIM barrel, b	94.49
2vws_A	267	YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escher	94.48
1m3u_A	264	3-methyl-2-oxobutanoate hydroxymethyltransferase;	94.48
1m6j_A	261	TIM, TPI, triosephosphate isomerase; asymmetry, mo	94.45
3si9_A	315	DHDPS, dihydrodipicolinate synthase; structural ge	94.39
3qze_A	314	DHDPS, dihydrodipicolinate synthase; alpha beta ba	94.27
1oy0_A	281	Ketopantoate hydroxymethyltransferase; domain swap	94.26
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	94.22
1o66_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	94.21
2vxn_A	251	Triosephosphate isomerase; fatty acid biosynthesis	94.17
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	94.14
2wkj_A	303	N-acetylneuraminate lyase; directed evolution, sia	94.1
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	94.08
3nvt_A	385	3-deoxy-D-arabino-heptulosonate 7-phosphate synth;	94.0
3iwp_A	287	Copper homeostasis protein CUTC homolog; conserved	93.98
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	93.94
2r8w_A	332	AGR_C_1641P; APC7498, dihydrodipicolinate synthase	93.86
1vli_A	385	Spore coat polysaccharide biosynthesis protein SP;	93.83
3na8_A	315	Putative dihydrodipicolinate synthetase; lyase; HE	93.68
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	93.63
3a5f_A	291	Dihydrodipicolinate synthase; TIM barrel, enzyme,	93.63
1vs1_A	276	3-deoxy-7-phosphoheptulonate synthase; (beta/alpha	93.61
3qz6_A	261	HPCH/HPAI aldolase; structural genomics, PSI-biolo	93.49
2wqp_A	349	Polysialic acid capsule biosynthesis protein SIAC;	93.48
3g8r_A	350	Probable spore coat polysaccharide biosynthesis P;	93.45
1b9b_A	255	TIM, protein (triosephosphate isomerase); thermoph	93.39
3eb2_A	300	Putative dihydrodipicolinate synthetase; lysine bi	93.36
1tx2_A	297	DHPS, dihydropteroate synthase; folate biosynthesi	93.32
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	93.26
2vp8_A	318	Dihydropteroate synthase 2; RV1207 transferase, fo	93.2
1ney_A	247	TIM, triosephosphate isomerase; yeast, DHAP, dihyd	93.18
1ydn_A	295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	93.16
4a29_A	258	Engineered retro-aldol enzyme RA95.0; de novo prot	93.13
1viz_A	240	PCRB protein homolog; structural genomics, unknown	93.07
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	93.05
3m9y_A	254	Triosephosphate isomerase; TIM barrel, glycolysis,	93.04
2vc6_A	292	MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar	93.03
3tak_A	291	DHDPS, dihydrodipicolinate synthase; TIM barrel, l	93.0
2v9d_A	343	YAGE; dihydrodipicolinic acid synthase, N-acetyl n	92.96
2ojp_A	292	DHDPS, dihydrodipicolinate synthase; dimer, lysine	92.84
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	92.83
3d0c_A	314	Dihydrodipicolinate synthase; lysine biosynthesis,	92.76
3zwt_A	367	Dihydroorotate dehydrogenase (quinone), mitochond;	92.76
3e96_A	316	Dihydrodipicolinate synthase; structural genomics,	92.63
3o1n_A	276	3-dehydroquinate dehydratase; structural genomics,	92.56
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	92.56
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	92.53
2f6u_A	234	GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy	92.49
1twd_A	256	Copper homeostasis protein CUTC; TIM-like protein,	92.48
2yxg_A	289	DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b	92.4
2wqp_A	349	Polysialic acid capsule biosynthesis protein SIAC;	92.23
2yci_X	271	5-methyltetrahydrofolate corrinoid/iron sulfur PR	92.23
1zco_A	262	2-dehydro-3-deoxyphosphoheptonate aldolase; arabin	92.08
2rfg_A	297	Dihydrodipicolinate synthase; beta barrel, amino-a	92.07
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	92.02
2v5b_A	244	Triosephosphate isomerase; TIM, unfolding, monotct	91.99
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	91.86
1vr6_A	350	Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034	91.85
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	91.77
2yr1_A	257	3-dehydroquinate dehydratase; amino acid biosynthe	91.55
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	91.54
2ehh_A	294	DHDPS, dihydrodipicolinate synthase; structural ge	91.35
3s5o_A	307	4-hydroxy-2-oxoglutarate aldolase, mitochondrial;	91.32
1i4n_A	251	Indole-3-glycerol phosphate synthase; thermostable	91.2
3ih1_A	305	Methylisocitrate lyase; alpha-beta structure, TIM-	91.12
1xky_A	301	Dihydrodipicolinate synthase; TIM barrel, , lysine	91.09
2dqw_A	294	Dihydropteroate synthase; dimer, structural genomi	91.07
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	91.02
1xg4_A	295	Probable methylisocitrate lyase; 2-methylisocitrat	90.92
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	90.78
3b4u_A	294	Dihydrodipicolinate synthase; structural genomics,	90.57
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	90.55
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	90.55
3qst_A	255	Triosephosphate isomerase, putative; TIM barrel; 1	90.4
3eoo_A	298	Methylisocitrate lyase; seattle structural genomic	90.35
3krs_A	271	Triosephosphate isomerase; ssgcid, SBRI, emerald b	90.35
3to5_A	134	CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, p	90.32
3h5d_A	311	DHDPS, dihydrodipicolinate synthase; lysine biosyn	90.25
3noy_A	366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	90.25
3qze_A	314	DHDPS, dihydrodipicolinate synthase; alpha beta ba	90.1
3gdm_A	267	Orotidine 5'-phosphate decarboxylase; orotidine 5'	90.08
3g3d_A	312	UMP synthase, uridine 5'-monophosphate synthase; C	90.03
3flu_A	297	DHDPS, dihydrodipicolinate synthase; TIM barrel, b	90.03
3th6_A	249	Triosephosphate isomerase; alpha/beta barrel, embr	89.9
3tr9_A	314	Dihydropteroate synthase; biosynthesis of cofactor	89.86
1f6k_A	293	N-acetylneuraminate lyase; beta barrel; 1.60A {Hae	89.82
2yxg_A	289	DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b	89.82
3cpr_A	304	Dihydrodipicolinate synthetase; (beta/alpha)8-barr	89.73
1tv5_A	443	Dhodehase, dihydroorotate dehydrogenase homolog, m	89.67
3tak_A	291	DHDPS, dihydrodipicolinate synthase; TIM barrel, l	89.65
3eww_A	260	Ompdecase, orotidine-5'-phosphate decarboxylase; T	89.63
1o5k_A	306	DHDPS, dihydrodipicolinate synthase; TM1521, struc	89.59
2ehh_A	294	DHDPS, dihydrodipicolinate synthase; structural ge	89.58
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	89.43
3na8_A	315	Putative dihydrodipicolinate synthetase; lyase; HE	89.41
4gbu_A	400	NADPH dehydrogenase 1; alpha/beta barrel, enenone	89.31
1o5k_A	306	DHDPS, dihydrodipicolinate synthase; TM1521, struc	89.3
2r8w_A	332	AGR_C_1641P; APC7498, dihydrodipicolinate synthase	89.28
2v9d_A	343	YAGE; dihydrodipicolinic acid synthase, N-acetyl n	89.25
3si9_A	315	DHDPS, dihydrodipicolinate synthase; structural ge	89.24
3vzx_A	228	Heptaprenylglyceryl phosphate synthase; biosynthes	89.17
2i14_A	395	Nicotinate-nucleotide pyrophosphorylase; ligand bi	89.13
2fiq_A	420	Putative tagatose 6-phosphate kinase 1; structural	89.11
3l21_A	304	DHDPS, dihydrodipicolinate synthase; DAPA, dimer,	89.09
1m5w_A	243	Pyridoxal phosphate biosynthetic protein PDXJ; TIM	89.09
2rfg_A	297	Dihydrodipicolinate synthase; beta barrel, amino-a	89.04
2ojp_A	292	DHDPS, dihydrodipicolinate synthase; dimer, lysine	89.03
3tr9_A	314	Dihydropteroate synthase; biosynthesis of cofactor	88.98
3daq_A	292	DHDPS, dihydrodipicolinate synthase; lysine biosyn	88.89
3aty_A	379	Tcoye, prostaglandin F2A synthase; alpha/beta barr	88.84
3i65_A	415	Dihydroorotate dehydrogenase homolog, mitochondria	88.83
3dz1_A	313	Dihydrodipicolinate synthase; lysine biosynthesis,	88.76
3elf_A	349	Fructose-bisphosphate aldolase; zinc enzyme, dihyd	88.62
1vli_A	385	Spore coat polysaccharide biosynthesis protein SP;	88.57
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	88.56
2vc6_A	292	MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar	88.55
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	88.53
3m5v_A	301	DHDPS, dihydrodipicolinate synthase; TIM barrel, c	88.48
3gk0_A	278	PNP synthase, pyridoxine 5'-phosphate synthase; de	88.47
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	88.47
1eye_A	280	DHPS 1, dihydropteroate synthase I; alpha-beta bar	88.38
3fa4_A	302	2,3-dimethylmalate lyase; alpha/beta barrel, helix	88.34
1f6k_A	293	N-acetylneuraminate lyase; beta barrel; 1.60A {Hae	88.33
3daq_A	292	DHDPS, dihydrodipicolinate synthase; lysine biosyn	88.31
3m5v_A	301	DHDPS, dihydrodipicolinate synthase; TIM barrel, c	88.29
3kts_A	192	Glycerol uptake operon antiterminator regulatory;	88.18
3lye_A	307	Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre	88.14
2wkj_A	303	N-acetylneuraminate lyase; directed evolution, sia	88.04
3b4u_A	294	Dihydrodipicolinate synthase; structural genomics,	87.86
4h3d_A	258	3-dehydroquinate dehydratase; structural genomics,	87.75
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	87.67
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	87.43
1sfl_A	238	3-dehydroquinate dehydratase; 3-dehydroquinase, en	87.36
3oix_A	345	Putative dihydroorotate dehydrogenase; dihydrooro	87.35
2pcq_A	283	Putative dihydrodipicolinate synthase; lyase, lysi	87.23
3o63_A	243	Probable thiamine-phosphate pyrophosphorylase; thi	87.22
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	87.11
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	87.0
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	86.75
2r14_A	377	Morphinone reductase; H-tunnelling, flavoprotein,	86.74
2vef_A	314	Dihydropteroate synthase; antibiotic resistance, t	86.65
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	86.65
3eb2_A	300	Putative dihydrodipicolinate synthetase; lysine bi	86.62
1zlp_A	318	PSR132, petal death protein; TIM-barrel, helix swa	86.61
3fkr_A	309	L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f	86.54
2dqw_A	294	Dihydropteroate synthase; dimer, structural genomi	85.92
2rdx_A	379	Mandelate racemase/muconate lactonizing enzyme, P;	85.89
1yad_A	221	Regulatory protein TENI; TIM barrel, transcription	85.85
3qfe_A	318	Putative dihydrodipicolinate synthase family PROT;	85.83
2bdq_A	224	Copper homeostasis protein CUTC; alpha beta protei	85.64
3nl6_A	540	Thiamine biosynthetic bifunctional enzyme; thiamin	85.61
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	85.55
2hmc_A	344	AGR_L_411P, dihydrodipicolinate synthase; alpha-be	85.49
3a5f_A	291	Dihydrodipicolinate synthase; TIM barrel, enzyme,	85.45
3sz8_A	285	2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci	85.39
2p10_A	286	MLL9387 protein; putative phosphonopyruvate hydrol	85.23
3d0c_A	314	Dihydrodipicolinate synthase; lysine biosynthesis,	85.16
4ef8_A	354	Dihydroorotate dehydrogenase; phenyl isothiocyanat	84.97
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	84.97
3h5d_A	311	DHDPS, dihydrodipicolinate synthase; lysine biosyn	84.88
1dos_A	358	Aldolase class II; lyase, classii fructose 1,6-bis	84.86
2hmc_A	344	AGR_L_411P, dihydrodipicolinate synthase; alpha-be	84.85
3k13_A	300	5-methyltetrahydrofolate-homocysteine methyltrans;	84.81
3gl9_A	122	Response regulator; beta-sheet, surrounded by alph	84.61
3txv_A	450	Probable tagatose 6-phosphate kinase; structural g	84.59
2czd_A	208	Orotidine 5'-phosphate decarboxylase; pyrimidine b	84.22
2y5s_A	294	DHPS, dihydropteroate synthase; transferase, folat	84.16
3sz8_A	285	2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci	84.12
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	84.07
2h9a_B	310	CO dehydrogenase/acetyl-COA synthase, iron- sulfur	83.99
3nvt_A	385	3-deoxy-D-arabino-heptulosonate 7-phosphate synth;	83.95
1mdl_A	359	Mandelate racemase; isomerase, mandelate pathway,	83.95
3fkr_A	309	L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f	83.91
2qiw_A	255	PEP phosphonomutase; structural genomics, joint ce	83.91
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	83.91
3qfe_A	318	Putative dihydrodipicolinate synthase family PROT;	83.86
1zco_A	262	2-dehydro-3-deoxyphosphoheptonate aldolase; arabin	83.81
3e96_A	316	Dihydrodipicolinate synthase; structural genomics,	83.76
2f7f_A	494	Nicotinate phosphoribosyltransferase, putative; st	83.68
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	83.65
3tml_A	288	2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid,	83.64
3ble_A	337	Citramalate synthase from leptospira interrogans;	83.44
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	83.4
2yxb_A	161	Coenzyme B12-dependent mutase; alpha/beta, structu	83.37
2ovl_A	371	Putative racemase; structural genomics, PSI-2, pro	83.05
4hb7_A	270	Dihydropteroate synthase; transferase; 1.95A {Stap	82.68
1eye_A	280	DHPS 1, dihydropteroate synthase I; alpha-beta bar	82.5
2oz8_A	389	MLL7089 protein; structural genomics, unknown func	82.46
3fs2_A	298	2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid,	82.44
3luf_A	259	Two-component system response regulator/ggdef doma	82.44
3cwo_X	237	Beta/alpha-barrel protein based on 1THF and 1TMY;	82.41
1k66_A	149	Phytochrome response regulator RCPB; CHEY homologu	82.23
2ze3_A	275	DFA0005; organic waste LEFT-OVER decomposition, al	81.68
3s5o_A	307	4-hydroxy-2-oxoglutarate aldolase, mitochondrial;	81.36
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	81.03
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	81.01
2nql_A	388	AGR_PAT_674P, isomerase/lactonizing enzyme; enolas	80.74
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	80.56
2hjp_A	290	Phosphonopyruvate hydrolase; phosporus-Ca cleavage	80.49
3f6p_A	120	Transcriptional regulatory protein YYCF; unphospho	80.37
2pgw_A	384	Muconate cycloisomerase; enolase superfamily, octa	80.24
3eul_A	152	Possible nitrate/nitrite response transcriptional	80.01

>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A

Probab=100.00  E-value=2.5e-48  Score=348.39  Aligned_cols=277  Identities=61%  Similarity=1.009  Sum_probs=244.7

Q ss_pred             eecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHH
Q 037779           33 MLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEA  112 (310)
Q Consensus        33 ~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~  112 (310)
                      +|++|.|+++.++++|+.++++||.+++.|.++|+|+|.++|..++++++.|++|++.+++||+.+++++|+.++|++++
T Consensus         9 ~~~~~vimdv~~~eqa~iae~aGa~av~~l~~~p~d~r~~gGv~Rm~dp~~I~~I~~aVsIPVm~k~righ~~EAqilea   88 (291)
T 3o07_A            9 MLKGGVIMDVVTPEQAKIAEKSGACAVMALESIPADMRKSGKVCRMSDPKMIKDIMNSVSIPVMAKVRIGHFVEAQIIEA   88 (291)
T ss_dssp             -CTTCEEEEESSHHHHHHHHHHTCSEEEECSSCHHHHHTTTCCCCCCCHHHHHHHHTTCSSCEEEEEETTCHHHHHHHHH
T ss_pred             cccCCeeeecCCHHHHHHHHHhCchhhhhccCCCchhhhcCCccccCCHHHHHHHHHhCCCCeEEEEecCcHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceeccc
Q 037779          113 IGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLR  192 (310)
Q Consensus       113 aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~  192 (310)
                      +|+|+|..++.++|.+....+.++.++++++++++|+.|+.++++.||++|++.|+.+||+..+++++.|.++.+++.+.
T Consensus        89 ~GaD~IDesevltpad~~~~I~k~~f~vpfv~~~~~l~EAlrri~eGA~mIrTtge~gtg~v~~av~h~r~~~~~i~~l~  168 (291)
T 3o07_A           89 LEVDYIDESEVLTPADWTHHIEKDKFKVPFVCGAKDLGEALRRINEGAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQ  168 (291)
T ss_dssp             TTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHHTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCEEecccCCCHHHHHHHhhhhcCCCcEEeeCCCHHHHHHHHHCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHH
Confidence            99999988888899888888877668899999999999999999999999999999999999999999999999999888


Q ss_pred             cc-CchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 037779          193 NM-DDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQA  271 (310)
Q Consensus       193 ~~-~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~  271 (310)
                      .+ +.+.+..+++...++|++++.+++..++||++|++|||+|++++.+++++|||||+|||++++++||..++++|.++
T Consensus       169 g~~t~~el~~~a~~~~ad~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~A  248 (291)
T 3o07_A          169 QLKSEDDIAKVAEEMRVPVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEA  248 (291)
T ss_dssp             TCCCHHHHHHHHHHHTSCHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHH
T ss_pred             cCCCHHHhhhcccccCCCHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHH
Confidence            88 77666555566678999999999988899987899999999999999999999999999999999999999999999


Q ss_pred             HHcCCChhhHHhhhhccCCceeccccccc---h-hhhhhccC
Q 037779          272 VTNYSDPDVLAEVSCGLGEAMVGIDLNDV---K-VERYANRS  309 (310)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~  309 (310)
                      +++|.+|.+++|+++.+|++|.||+..+.   + -||++.|.
T Consensus       249 v~~~~~~~~~~~~s~~l~~~m~g~~~~~~~~~~~~~~~~~rg  290 (291)
T 3o07_A          249 TTHFDNPSKLLEVSSDLGELMGGVSIESISHASNGVRLSEIG  290 (291)
T ss_dssp             HHTTTCHHHHHHHHSSCCCC----------------------
T ss_pred             HHhccCHHHHHHHHhcccccccCcchhhhccCchHHHHhhcC
Confidence            99999999999999999999999999988   3 45777663

>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}

Probab=100.00  E-value=6.2e-45  Score=335.39  Aligned_cols=287  Identities=66%  Similarity=0.977  Sum_probs=240.0

Q ss_pred             CccccccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc
Q 037779           23 PFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG  102 (310)
Q Consensus        23 p~~~~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~  102 (310)
                      .+..+.++.++|+||.|+++..+++|+.|+++||++|+.|+|+|+|+++|+|+.++++++.+++|++.+++||++|+|++
T Consensus         5 ~~~~~~~~~~~~kgGvI~d~~~~e~A~~ae~aGA~aI~~l~~v~~d~~~~~G~arm~~p~~i~~I~~av~iPV~~K~rig   84 (330)
T 2yzr_A            5 TDLLKKGFAKMVKHGVVMDVTNVEQAQIAEEAGAVAVMALERVPADIRAAGGVARMSDPALIEEIMDAVSIPVMAKCRIG   84 (330)
T ss_dssp             CTHHHHHHHHTTTTSEEEEESSHHHHHHHHHHTCSEEEECSSCHHHHC--CCCCCCCCHHHHHHHHHHCSSCEEEEEETT
T ss_pred             cHHHHHHHHHHccCCceeeCCHHHHHHHHHHcCCCEEEecCCccccccCCcchhhcCCHHHHHHHHHhcCCCeEEEEeec
Confidence            44567788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHH
Q 037779          103 HFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVR  182 (310)
Q Consensus       103 ~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~  182 (310)
                      |++++|+++++|||+|+++..++|.+....+.++.++.++++.++++.|+.+.+..|+++|.++|+.++++++++++|.|
T Consensus        85 ~~~e~qilea~GaD~Id~s~~l~p~d~~~~i~k~~~~~~~~~~a~~lgea~r~~~~Ga~~i~t~ge~g~~~~ve~v~H~r  164 (330)
T 2yzr_A           85 HTTEALVLEAIGVDMIDESEVLTQADPFFHIYKKKFNVPFVCGARNLGEAVRRIWEGAAMIRTKGEAGTGNIVEAVRHMR  164 (330)
T ss_dssp             CHHHHHHHHHTTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEECSSHHHHHHHHHHTCSEEEECCCTTSCCTHHHHHHHH
T ss_pred             chHHHHHHHHcCCCEEehhccCCHHHHHHHhhhhhcccchhhccccHHHHHHHHhcCcceeeccCCCCcccchhHHHHHH
Confidence            99999999999999999777777766544444444689999999999999999999999999999999999999999988


Q ss_pred             HhhcceecccccCchhHHhhhccCCCcH-------------------------------------HHHHHHHhcCCCCEE
Q 037779          183 SVMGDIRVLRNMDDDEVFTFAKNIAAPY-------------------------------------DLVMQTKQLGRLPVV  225 (310)
Q Consensus       183 ~~~~~~~~l~~~~~d~~~~~~~~~~~~~-------------------------------------~l~~~i~~~~~iPVv  225 (310)
                      .+..+++.+++.+.+.+...+...+.++                                     ++++.+++..++||+
T Consensus       165 ~~~~~~~~~s~~~~~El~~~A~~~gadyv~~~~~vt~~~G~~~r~Lg~G~Vf~T~TK~~~~~~~lell~~i~~~~~IPVV  244 (330)
T 2yzr_A          165 LMNEAIAQLQRMTDEEVYGVAKFYANRYAELAKTVREGMGLPATVLENEPIYEGFTLAEIIDGLYEVLLEVKKLGRLPVV  244 (330)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHGGGGHHHHHHHHHTTSCSCCCTTSEEETTEEHHHHHHHHHHHHHHHHHHTSCSSE
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHcCCCEeecccchhhhccccccccccccccCCCcccCCCcchHHHHHHHHHhCCCCeE
Confidence            8777777777766655532111112222                                     888888887789997


Q ss_pred             EEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChhhHHhhhhccCCceeccccccchh-hh
Q 037779          226 HFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKV-ER  304 (310)
Q Consensus       226 ~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  304 (310)
                      .|++|||+|++|+.+++++|||||+|||+|++++||...+++|.++++++.+|.+++|+++.+|++|.||+..+.+. +|
T Consensus       245 ~VAeGGI~Tpeda~~~l~~GaDgV~VGsaI~~a~dP~~aar~l~~ai~~~~~~~~~~~~s~~~~~~m~g~~~~~~~~~~~  324 (330)
T 2yzr_A          245 NFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLERARAIVEATYNYDKPDIVAEVSKNLGEAMKGIDITQISEAEK  324 (330)
T ss_dssp             EEECSCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHTTTCHHHHHHHHTTCCCCCCC-----------
T ss_pred             EEEECCCCCHHHHHHHHHcCcCEEeeHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHHHhcccccCcCccccccChhhH
Confidence            66899999999999999999999999999999999999999999999999999999999999999999999999865 48


Q ss_pred             hhccC
Q 037779          305 YANRS  309 (310)
Q Consensus       305 ~~~~~  309 (310)
                      ++.|.
T Consensus       325 ~~~~~  329 (330)
T 2yzr_A          325 MQYRG  329 (330)
T ss_dssp             -----
T ss_pred             hhhcC
Confidence            88773

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=100.00  E-value=1.6e-41  Score=312.90  Aligned_cols=281  Identities=60%  Similarity=0.953  Sum_probs=243.4

Q ss_pred             CCccccccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccc
Q 037779           22 SPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARI  101 (310)
Q Consensus        22 sp~~~~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i  101 (310)
                      ++++.+.++.+||+||.+++..++++|+.|+++||++|+.|.+.|+|+++|+|..+..+++.|+++++.+++||+++.++
T Consensus         8 ~~~~~~~~~~~~~kggv~~d~~~~e~A~~ye~~GA~~lsvLe~~~~Di~~~~g~~R~~~~~~i~~i~~~v~iPvl~k~~i   87 (297)
T 4adt_A            8 DSILLKHGWCEMLKGGVIMDVKNVEQAKIAEKAGAIGVMILENIPSELRNTDGVARSVDPLKIEEIRKCISINVLAKVRI   87 (297)
T ss_dssp             HHHHHHHHHHHTTTTCEEEEESSHHHHHHHHHHTCSEEEECCCCC-----CCCCCCCCCHHHHHHHHTTCCSEEEEEEET
T ss_pred             CcHHHHHhHHHHhcCCcccCCCcHHHHHHHHHcCCCEEEEecCCCCcchhcCCcccCCCHHHHHHHHHhcCCCEEEeccC
Confidence            34566789999999999999999999999999999999999888889999999667778999999999999999999888


Q ss_pred             cchHHHHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHH
Q 037779          102 GHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHV  181 (310)
Q Consensus       102 ~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~  181 (310)
                      ++.+++|.++++|||.|..++.+++.++++.+++++++++++++++|.+|++++.+.|+++|+++|..+|+++.++++|.
T Consensus        88 ~~ide~qil~aaGAD~Id~s~~~~~~~li~~i~~~~~g~~vvv~v~~~~Ea~~a~~~Gad~I~v~g~~gTG~~~~~v~h~  167 (297)
T 4adt_A           88 GHFVEAQILEELKVDMLDESEVLTMADEYNHINKHKFKTPFVCGCTNLGEALRRISEGASMIRTKGEAGTGNIIEAIKHI  167 (297)
T ss_dssp             TCHHHHHHHHHTTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHHTCSEEEECCCTTSCCCHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhCCCCEEEECCCcCCCchHHHHHHH
Confidence            87889999999999999655556777777777776678999999999999999999999999999988888889999999


Q ss_pred             HHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCH
Q 037779          182 RSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDP  261 (310)
Q Consensus       182 ~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp  261 (310)
                      +.+...+|++..++.|.+..+++....++++++.+++..++||+++++|||++++++.+++++|||+|+|||+|++++||
T Consensus       168 ~~~~~eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~~~~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp  247 (297)
T 4adt_A          168 RTVNNEIKYLCSLDESEVYNFAKKLRAPIDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENP  247 (297)
T ss_dssp             HHHHHHHHHHHHSCTTTHHHHHHHHTCCHHHHHHHHHHTSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCH
T ss_pred             HHhhhhhhhhccccccccccccccCCCCHHHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCH
Confidence            99887777888877776544434446689999999887789997668999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCChhhHHhhhhccCCceeccccccchh
Q 037779          262 VRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKV  302 (310)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (310)
                      ...+++|++.+++|.+|..+.++++.+|++|.||+....+-
T Consensus       248 ~~~~~~l~~ai~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  288 (297)
T 4adt_A          248 QKMASSIVMAVSNFNNPKILLNVSLGLGKAMHGNTKVSNKW  288 (297)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTTTCCCCCCCCCC-----
T ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHhhcccCCCCCCcccccc
Confidence            99999999999999999999999999999999999987653

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=100.00  E-value=3.4e-34  Score=261.06  Aligned_cols=208  Identities=17%  Similarity=0.249  Sum_probs=173.6

Q ss_pred             ceEEEEeccCCCccccccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhh
Q 037779           12 NGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSS   90 (310)
Q Consensus        12 ~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~   90 (310)
                      +++|+|+||+|||+           |.|++..+| ++|+.|+++||++||++    ||..+|+|+     ++.++.+++.
T Consensus        59 ~~vIaE~KraSPSk-----------G~i~~~~dp~~~A~~y~~~GA~~IsVl----td~~~f~Gs-----~~~L~~ir~~  118 (272)
T 3tsm_A           59 FALIAEIKKASPSK-----------GLIRPDFDPPALAKAYEEGGAACLSVL----TDTPSFQGA-----PEFLTAARQA  118 (272)
T ss_dssp             CEEEEEECSEETTT-----------EESCSSCCHHHHHHHHHHTTCSEEEEE----CCSTTTCCC-----HHHHHHHHHT
T ss_pred             ceEEEEeccCCCCC-----------CccCCCCCHHHHHHHHHHCCCCEEEEe----ccccccCCC-----HHHHHHHHHh
Confidence            79999999999999           999998886 79999999999999998    899999888     9999999999


Q ss_pred             cCcceEeeccccchHHHHHHHHcCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEecC
Q 037779           91 VTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTKGE  168 (310)
Q Consensus        91 ~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~  168 (310)
                      +++||++|||+.+..++..+.++|||.|+ +...++..++.+.+.. +..|+.+++++||.+|++++.++|+++|++|++
T Consensus       119 v~lPVl~Kdfi~d~~qi~ea~~~GAD~VlLi~a~L~~~~l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~ga~iIGinnr  198 (272)
T 3tsm_A          119 CSLPALRKDFLFDPYQVYEARSWGADCILIIMASVDDDLAKELEDTAFALGMDALIEVHDEAEMERALKLSSRLLGVNNR  198 (272)
T ss_dssp             SSSCEEEESCCCSTHHHHHHHHTTCSEEEEETTTSCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHTTSCCSEEEEECB
T ss_pred             cCCCEEECCccCCHHHHHHHHHcCCCEEEEcccccCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCEEEECCC
Confidence            99999999999765566667789999998 6667776666666655 557899999999999999999999999999854


Q ss_pred             CCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCE
Q 037779          169 AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG  248 (310)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~Gadg  248 (310)
                                           ++.++..        ++....++.+.++.  ++|+  |++|||+|++|+.++.++|++|
T Consensus       199 ---------------------~l~t~~~--------dl~~~~~L~~~ip~--~~~v--IaesGI~t~edv~~l~~~Ga~g  245 (272)
T 3tsm_A          199 ---------------------NLRSFEV--------NLAVSERLAKMAPS--DRLL--VGESGIFTHEDCLRLEKSGIGT  245 (272)
T ss_dssp             ---------------------CTTTCCB--------CTHHHHHHHHHSCT--TSEE--EEESSCCSHHHHHHHHTTTCCE
T ss_pred             ---------------------CCccCCC--------ChHHHHHHHHhCCC--CCcE--EEECCCCCHHHHHHHHHcCCCE
Confidence                                 2333322        11223344444432  4677  7899999999999999999999


Q ss_pred             EEEccccccCCCHHHHHHHHHHHH
Q 037779          249 VFVGSGVFKSGDPVRRARAIVQAV  272 (310)
Q Consensus       249 V~VGsai~~~~dp~~~~~~~~~~~  272 (310)
                      |+||++||+++||.+.+++|...-
T Consensus       246 vLVG~almr~~d~~~~~~~l~~g~  269 (272)
T 3tsm_A          246 FLIGESLMRQHDVAAATRALLTGA  269 (272)
T ss_dssp             EEECHHHHTSSCHHHHHHHHHHC-
T ss_pred             EEEcHHHcCCcCHHHHHHHHHhcc
Confidence            999999999999999999987643

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=100.00  E-value=3.7e-34  Score=261.60  Aligned_cols=215  Identities=24%  Similarity=0.316  Sum_probs=166.0

Q ss_pred             ecceEEEEeccCCCccccccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHH
Q 037779           10 YGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIK   88 (310)
Q Consensus        10 ~~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~   88 (310)
                      .|.++|+|+||+|||+           |.|....+| ++|+.|+++||++|+++    ||..+|+|+     ++.+++++
T Consensus        50 ~~~~~IaE~K~asPs~-----------g~i~~~~~p~~~A~~y~~~GA~~isvl----td~~~f~Gs-----~~~l~~ir  109 (272)
T 3qja_A           50 PGIGVIAEVKRASPSA-----------GALATIADPAKLAQAYQDGGARIVSVV----TEQRRFQGS-----LDDLDAVR  109 (272)
T ss_dssp             SSCEEEEEEC------------------------CHHHHHHHHHHTTCSEEEEE----CCGGGHHHH-----HHHHHHHH
T ss_pred             CCCeEEEEEecCCCCC-----------CccCCCCCHHHHHHHHHHcCCCEEEEe----cChhhcCCC-----HHHHHHHH
Confidence            3589999999999999           999998886 79999999999999988    999999988     89999999


Q ss_pred             hhcCcceEeeccccchHHHHHHHHcCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEe
Q 037779           89 SSVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus        89 ~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                      +.+++||+++|++.+..+++.+.++|||+|+ +...+++.++.+.+.. +..|+.+++++||.+|++++.+.|+|+|+++
T Consensus       110 ~~v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~Gad~IGv~  189 (272)
T 3qja_A          110 ASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALKAGAKVIGVN  189 (272)
T ss_dssp             HHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEEE
T ss_pred             HhCCCCEEECccccCHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHCCCCEEEEC
Confidence            9999999999998764457777889999998 5666666666555544 4478999999999999999999999999998


Q ss_pred             cCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHc
Q 037779          167 GEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQL  244 (310)
Q Consensus       167 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~  244 (310)
                      +..                     +.++.            .+.+....+.+..  ++|+  +++|||+|++|+.++.++
T Consensus       190 ~r~---------------------l~~~~------------~dl~~~~~l~~~v~~~~pv--VaegGI~t~edv~~l~~~  234 (272)
T 3qja_A          190 ARD---------------------LMTLD------------VDRDCFARIAPGLPSSVIR--IAESGVRGTADLLAYAGA  234 (272)
T ss_dssp             SBC---------------------TTTCC------------BCTTHHHHHGGGSCTTSEE--EEESCCCSHHHHHHHHHT
T ss_pred             CCc---------------------ccccc------------cCHHHHHHHHHhCcccCEE--EEECCCCCHHHHHHHHHc
Confidence            531                     11211            1223344444433  5788  678999999999999999


Q ss_pred             CCCEEEEccccccCCCHHHHHHHHHHHHHcCCChh
Q 037779          245 GCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPD  279 (310)
Q Consensus       245 GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~  279 (310)
                      |++||+|||+||+++||.+.+++|.+...+..+|.
T Consensus       235 GadgvlVGsal~~a~dp~~~~~~l~~~~~~~~~~~  269 (272)
T 3qja_A          235 GADAVLVGEGLVTSGDPRAAVADLVTAGTHPSCPK  269 (272)
T ss_dssp             TCSEEEECHHHHTCSCHHHHHHHHHTTTTCSCCCC
T ss_pred             CCCEEEEcHHHhCCCCHHHHHHHHHhhhcCCcCCc
Confidence            99999999999999999999999998887766653

>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...

Probab=100.00  E-value=9.8e-34  Score=252.86  Aligned_cols=200  Identities=20%  Similarity=0.250  Sum_probs=162.2

Q ss_pred             cceEEEEeccCCCccccccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHh
Q 037779           11 GNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS   89 (310)
Q Consensus        11 ~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~   89 (310)
                      .+++|+|+||+|||+           |.+.  .+| +.|+ +.++||.+||+|    ||.++|+|+     +++++++++
T Consensus        45 ~~~iIAEiKraSPSk-----------g~i~--~dp~~iA~-~~~~GA~aiSVL----Td~~~F~Gs-----~~~L~~vr~  101 (258)
T 4a29_A           45 ITAIIAVYERKSPSG-----------LDVE--RDPIEYAK-FMERYAVGLSIT----TEEKYFNGS-----YETLRKIAS  101 (258)
T ss_dssp             CCCEEEEECSBCTTS-----------CBCC--CCHHHHHH-HHTTTCSEEEEE----CCSTTTCCC-----HHHHHHHHT
T ss_pred             CcEEEEEEecCCCCC-----------CCcc--CCHHHHHH-HHhCCCeEEEEe----CCCCCCCCC-----HHHHHHHHH
Confidence            468999999999999           8884  355 5665 556899999999    999999999     999999999


Q ss_pred             hcCcceEeeccccchHHHHHHHH--cCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEE
Q 037779           90 SVTIPVMAKARIGHFVEAQILEA--IGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRT  165 (310)
Q Consensus        90 ~~~lPv~~kd~i~~~~~~~~~~~--aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v  165 (310)
                      .+++||++|||+.+  ++|++++  +|||.|+ +...++..++.+++.. +..|+.+++++||.+|++++.+.|+++|++
T Consensus       102 ~v~lPvLrKDFiid--~yQI~eAr~~GADaILLI~a~L~~~~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~~a~iIGI  179 (258)
T 4a29_A          102 SVSIPILMSDFIVK--ESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLILINDENDLDIALRIGARFIGI  179 (258)
T ss_dssp             TCSSCEEEESCCCS--HHHHHHHHHHTCSEEEEEGGGSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHTTCSEEEE
T ss_pred             hcCCCEeecccccc--HHHHHHHHHcCCCeeehHHhhcCHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHhcCCCcEEEE
Confidence            99999999999984  6666655  9999998 7777887777776665 668899999999999999999999999999


Q ss_pred             ecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC
Q 037779          166 KGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG  245 (310)
Q Consensus       166 ~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G  245 (310)
                      |+                     |++.+++.|        +....++.+.+++  ++  +.|++|||+|++|+.++.++|
T Consensus       180 NN---------------------RnL~tf~vd--------l~~t~~L~~~ip~--~~--~~VsESGI~t~~dv~~l~~~G  226 (258)
T 4a29_A          180 MS---------------------RDFETGEIN--------KENQRKLISMIPS--NV--VKVAKLGISERNEIEELRKLG  226 (258)
T ss_dssp             CS---------------------BCTTTCCBC--------HHHHHHHHTTSCT--TS--EEEEEESSCCHHHHHHHHHTT
T ss_pred             eC---------------------CCccccccC--------HHHHHHHHhhCCC--CC--EEEEcCCCCCHHHHHHHHHCC
Confidence            84                     456665432        1223344444332  23  337899999999999999999


Q ss_pred             CCEEEEccccccCCCHHHHHHHHHHH
Q 037779          246 CDGVFVGSGVFKSGDPVRRARAIVQA  271 (310)
Q Consensus       246 adgV~VGsai~~~~dp~~~~~~~~~~  271 (310)
                      ++||+||++||+++||.   ++|+++
T Consensus       227 ~~a~LVGealmr~~d~~---~~Li~G  249 (258)
T 4a29_A          227 VNAFLISSSLMRNPEKI---KELIEG  249 (258)
T ss_dssp             CCEEEECHHHHHCTTHH---HHHHC-
T ss_pred             CCEEEECHHHhCCCcHH---HHHHcC
Confidence            99999999999999974   455443

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=100.00  E-value=1.2e-32  Score=256.03  Aligned_cols=287  Identities=64%  Similarity=1.026  Sum_probs=212.2

Q ss_pred             CCccccccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccc
Q 037779           22 SPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARI  101 (310)
Q Consensus        22 sp~~~~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i  101 (310)
                      .++..+.++.+++++|.+++....++++.+.++|+++|++++|+|++.+.++|+.++.+++.++++++.+++|+++++++
T Consensus         8 ~~~~~~~~~~~~~~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~i~~I~~~~~iPv~~k~r~   87 (305)
T 2nv1_A            8 GTERVKRGMAEMQKGGVIMDVINAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARI   87 (305)
T ss_dssp             -CHHHHHHHHHTTTTCEEEEESSHHHHHHHHHTTCSEEEECCC-------CCCCCCCCCHHHHHHHHHHCSSCEEEEECT
T ss_pred             CcHHHHHHHHHHccCCeeecCCHHHHHHHHHHcCCCEEEEcCCCcchhhhccCcccCCCHHHHHHHHHhCCCCEEecccc
Confidence            45666778888999999998777899999999999999888888888888888778888999999999999999999998


Q ss_pred             cchHHHHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHH
Q 037779          102 GHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHV  181 (310)
Q Consensus       102 ~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~  181 (310)
                      ++.+.++.+.++|||+|+.+..+++.++.+.+..+.+++++++++++.+|+.++.+.|+|+|.+.|+.+++.+.+++.+.
T Consensus        88 g~~~~~~~~~a~GAd~V~~~~~l~~~~~~~~i~~~~~g~~v~~~~~~~~e~~~a~~~Gad~V~~~G~~g~g~~~~~~~h~  167 (305)
T 2nv1_A           88 GHIVEARVLEAMGVDYIDESEVLTPADEEFHLNKNEYTVPFVCGCRDLGEATRRIAEGASMLRTKGEPGTGNIVEAVRHM  167 (305)
T ss_dssp             TCHHHHHHHHHHTCSEEEECTTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHTTCSEEEECCCTTSCCTHHHHHHH
T ss_pred             cchHHHHHHHHCCCCEEEEeccCCHHHHHHHHHHhccCCcEEEEeCCHHHHHHHHHCCCCEEEeccccCccchHHHHhhh
Confidence            77778899999999999865555555544444333467899999999999999999999999998877667777887777


Q ss_pred             HHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCH
Q 037779          182 RSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDP  261 (310)
Q Consensus       182 ~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp  261 (310)
                      +.+..++..+..++.+.+..+......++++++.+++..++||+.+++|||.|++++.+++++||++|+|||+|++++||
T Consensus       168 rt~~~~i~~l~gi~~~~~~~~~~~~~~~~~~i~~i~~~~~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsai~~~~~p  247 (305)
T 2nv1_A          168 RKVNAQVRKVVAMSEDELMTEAKNLGAPYELLLQIKKDGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNP  247 (305)
T ss_dssp             HHHHHHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHTSCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGGSSCH
T ss_pred             hhhhccchhhccccchhhhcccccccccHHHHHHHHHhcCCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHHHHcCCCH
Confidence            65433333333333332211111124467888888887789995448999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCChhhHHhhhhccCCceeccccccchhh-hhhcc
Q 037779          262 VRRARAIVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVE-RYANR  308 (310)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  308 (310)
                      ...+++|.+.+.++.++..+.++++..|.+|.+|...+.+-| |+++|
T Consensus       248 ~~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  295 (305)
T 2nv1_A          248 AKFAKAIVEATTHFTDYKLIAELSKELGTAMKGIEISNLLPEQRMQER  295 (305)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHTSCC---------------------
T ss_pred             HHHHHHHHHHHHHhcChhhHHHHHHHhhhhhcCCChhhcchHHHHHhh
Confidence            999999999999999999999999999999999999999764 88877

>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A

Probab=100.00  E-value=1.6e-31  Score=240.72  Aligned_cols=205  Identities=17%  Similarity=0.222  Sum_probs=168.6

Q ss_pred             ceEEEEeccCCCccccccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhh
Q 037779           12 NGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSS   90 (310)
Q Consensus        12 ~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~   90 (310)
                      +++|+|+||+|||+           |.|++..++ ++|+.|+++ |.+|++|    ||.++|+|+     +++++++++.
T Consensus        41 ~~vIaE~K~aSPSk-----------G~i~~~~~~~~iA~~y~~~-A~~IsVl----Td~~~F~gs-----~~dL~~ir~~   99 (251)
T 1i4n_A           41 VKIIAEFKKASPSA-----------GDINADASLEDFIRMYDEL-ADAISIL----TEKHYFKGD-----PAFVRAARNL   99 (251)
T ss_dssp             CEEEEEECSBCSSS-----------CBSCTTCCHHHHHHHHHHH-CSEEEEE----CCCSSSCCC-----THHHHHHHTT
T ss_pred             ceEEEeecCCCCCC-----------CccCCCCCHHHHHHHHHHh-CCceEEE----ecccccCCC-----HHHHHHHHHh
Confidence            78999999999999           999988886 799999999 9999999    999999998     9999999999


Q ss_pred             cCcceEeeccccchHHHHHHHHcCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHh-CCCEEEEec
Q 037779           91 VTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIRE-GAAMIRTKG  167 (310)
Q Consensus        91 ~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~-Gad~I~v~g  167 (310)
                      +++||++|||+.+..++..+.++|||.|+ +...++..++.+.+.. +..|+.+++++||.+|++++.++ |+++|++|.
T Consensus       100 v~lPvLrKDfi~~~~qi~ea~~~GAD~ilLi~a~l~~~~l~~l~~~a~~lGl~~lvEv~~~eE~~~A~~l~g~~iIGinn  179 (251)
T 1i4n_A          100 TCRPILAKDFYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSREDLEKVFSVIRPKIIGINT  179 (251)
T ss_dssp             CCSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHTTTCEEEEEECSHHHHHHHHTTCCCSEEEEEC
T ss_pred             CCCCEEEeeCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhcCCCCEEEEeC
Confidence            99999999999743344446679999998 6666666667666665 66899999999999999999999 999999995


Q ss_pred             CCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCC
Q 037779          168 EAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCD  247 (310)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~Gad  247 (310)
                      +.                     +.++..        ++....++.+.++.  ++++  |++|||+|++|+.++.++ ++
T Consensus       180 r~---------------------l~t~~~--------d~~~~~~l~~~ip~--~~~v--IaEsGI~t~edv~~~~~~-a~  225 (251)
T 1i4n_A          180 RD---------------------LDTFEI--------KKNVLWELLPLVPD--DTVV--VAESGIKDPRELKDLRGK-VN  225 (251)
T ss_dssp             BC---------------------TTTCCB--------CTTHHHHHGGGSCT--TSEE--EEESCCCCGGGHHHHTTT-CS
T ss_pred             cc---------------------cccCCC--------CHHHHHHHHHhCCC--CCEE--EEeCCCCCHHHHHHHHHh-CC
Confidence            42                     233221        11212233333221  3455  789999999999999999 99


Q ss_pred             EEEEccccccCCCHHHHHHHHHHH
Q 037779          248 GVFVGSGVFKSGDPVRRARAIVQA  271 (310)
Q Consensus       248 gV~VGsai~~~~dp~~~~~~~~~~  271 (310)
                      +|+||++||+++||.+.+++|..+
T Consensus       226 avLVG~aimr~~d~~~~~~~l~~~  249 (251)
T 1i4n_A          226 AVLVGTSIMKAENPRRFLEEMRAW  249 (251)
T ss_dssp             EEEECHHHHHCSSHHHHHHHHHHH
T ss_pred             EEEEcHHHcCCcCHHHHHHHHHhC
Confidence            999999999999999999998765

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=99.98  E-value=5.3e-32  Score=245.28  Aligned_cols=205  Identities=19%  Similarity=0.234  Sum_probs=166.8

Q ss_pred             cceEEEEeccCCCccccccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHh
Q 037779           11 GNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS   89 (310)
Q Consensus        11 ~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~   89 (310)
                      +.++|+|+||+|||+           |+|++ .+| ++|+.|+++||++||++    |+..+|.|+     ++.++.+++
T Consensus        45 ~~~~IaE~k~aSPsk-----------g~i~~-~~p~~~A~~~~~~GA~~isvl----t~~~~f~G~-----~~~l~~i~~  103 (254)
T 1vc4_A           45 GLSVIAEVKRQSPSE-----------GLIRE-VDPVEAALAYARGGARAVSVL----TEPHRFGGS-----LLDLKRVRE  103 (254)
T ss_dssp             SCEEEEEECSCCTTT-----------CCCCS-CCHHHHHHHHHHTTCSEEEEE----CCCSSSCCC-----HHHHHHHHH
T ss_pred             CCcEEeeecCCCcCC-----------CcCCC-CCHHHHHHHHHHcCCCEEEEe----cchhhhccC-----HHHHHHHHH
Confidence            588999999999999           99999 775 89999999999999988    888899888     999999999


Q ss_pred             hcCcceEeeccccchHHHHHHHHcCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEec
Q 037779           90 SVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTKG  167 (310)
Q Consensus        90 ~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g  167 (310)
                      .+++||+++||+.+..++..+.++|||.|+ +...++ .++.+.+.. +.+|+.+++++|+.+|+.++.+.|+++++++.
T Consensus       104 ~v~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~~l~-~~l~~l~~~a~~lGl~~lvev~~~~E~~~a~~~gad~IGvn~  182 (254)
T 1vc4_A          104 AVDLPLLRKDFVVDPFMLEEARAFGASAALLIVALLG-ELTGAYLEEARRLGLEALVEVHTERELEIALEAGAEVLGINN  182 (254)
T ss_dssp             HCCSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHHG-GGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHHTCSEEEEES
T ss_pred             hcCCCEEECCcCCCHHHHHHHHHcCCCEEEECccchH-HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCCEEEEcc
Confidence            999999999999865566667889999998 554444 555555543 34679999999999999999999999999985


Q ss_pred             CCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCC
Q 037779          168 EAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGC  246 (310)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~Ga  246 (310)
                      ..+                     .++..        ++....++.+.++... ++|+  |++|||+|++|+.++.+ |+
T Consensus       183 ~~l---------------------~~~~~--------dl~~~~~L~~~i~~~~~~~~v--IAegGI~s~~dv~~l~~-Ga  230 (254)
T 1vc4_A          183 RDL---------------------ATLHI--------NLETAPRLGRLARKRGFGGVL--VAESGYSRKEELKALEG-LF  230 (254)
T ss_dssp             BCT---------------------TTCCB--------CTTHHHHHHHHHHHTTCCSEE--EEESCCCSHHHHHTTTT-TC
T ss_pred             ccC---------------------cCCCC--------CHHHHHHHHHhCccccCCCeE--EEEcCCCCHHHHHHHHc-CC
Confidence            432                     22211        2222334455554311 4677  67999999999999999 99


Q ss_pred             CEEEEccccccCCCHHHHHHHHH
Q 037779          247 DGVFVGSGVFKSGDPVRRARAIV  269 (310)
Q Consensus       247 dgV~VGsai~~~~dp~~~~~~~~  269 (310)
                      +||+|||+||+++||.+.+++|+
T Consensus       231 ~gvlVGsAl~~~~d~~~~~~~l~  253 (254)
T 1vc4_A          231 DAVLIGTSLMRAPDLEAALRELV  253 (254)
T ss_dssp             SEEEECHHHHTSSCHHHHHHHHH
T ss_pred             CEEEEeHHHcCCCCHHHHHHHHh
Confidence            99999999999999999998875

>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A

Probab=99.98  E-value=9.2e-32  Score=260.35  Aligned_cols=239  Identities=19%  Similarity=0.218  Sum_probs=189.3

Q ss_pred             cceEEEEeccCCCccccccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHh
Q 037779           11 GNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS   89 (310)
Q Consensus        11 ~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~   89 (310)
                      +.++|+|+||+|||+           |.|++..++ ++|+.|+++ |.+||+|    ||.++|+|+     +++++++|+
T Consensus        47 ~~~vIaEvKraSPSk-----------G~i~~~~~~~~iA~~y~~~-A~~IsvL----Td~~~F~gs-----~~dL~~vr~  105 (452)
T 1pii_A           47 RTAFILECKKASPSK-----------GVIRDDFDPARIAAIYKHY-ASAISVL----TDEKYFQGS-----FNFLPIVSQ  105 (452)
T ss_dssp             SCEEEEEECSEETTT-----------EESCSSCCHHHHHHHHTTT-CSEEEEE----CCSTTTCCC-----TTHHHHHHH
T ss_pred             CCceEEEecCCCCCC-----------CccCCCCCHHHHHHHHHhh-CcEEEEE----ecccccCCC-----HHHHHHHHH
Confidence            589999999999999           999988886 789999998 9999999    999999998     899999999


Q ss_pred             hcCcceEeeccccchHHHHHHHHcCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEec
Q 037779           90 SVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTKG  167 (310)
Q Consensus        90 ~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g  167 (310)
                      .+++||++|||+.+..++..+.++|||.|+ +...++..++.+.+.. +..|+.+++++||.+|++++.++|+++|++|.
T Consensus       106 ~v~lPvLrKDFI~d~~Qi~ea~~~GAD~ILLi~a~l~~~~l~~l~~~a~~lgm~~LvEvh~~eE~~~A~~lga~iIGinn  185 (452)
T 1pii_A          106 IAPQPILCKDFIIDPYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIALGAKVVGINN  185 (452)
T ss_dssp             HCCSCEEEESCCCSHHHHHHHHHTTCSEEEEETTTCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTTCSEEEEES
T ss_pred             hcCCCeEEEeccCCHHHHHHHHHcCCCEEEEEcccCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHCCCCEEEEeC
Confidence            999999999999743333335569999998 6667776666666655 55799999999999999999999999999985


Q ss_pred             CCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCC
Q 037779          168 EAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCD  247 (310)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~Gad  247 (310)
                      +                     ++.+++.        ++....++.+.++.  ++++  |++|||+|++|+.++.++ ++
T Consensus       186 r---------------------~L~t~~~--------dl~~~~~L~~~ip~--~~~v--IaEsGI~t~edv~~~~~~-a~  231 (452)
T 1pii_A          186 R---------------------DLRDLSI--------DLNRTRELAPKLGH--NVTV--ISESGINTYAQVRELSHF-AN  231 (452)
T ss_dssp             E---------------------ETTTTEE--------CTHHHHHHHHHHCT--TSEE--EEESCCCCHHHHHHHTTT-CS
T ss_pred             C---------------------CCCCCCC--------CHHHHHHHHHhCCC--CCeE--EEECCCCCHHHHHHHHHh-CC
Confidence            4                     3333322        22223455555543  3555  789999999999999999 99


Q ss_pred             EEEEccccccCCCHHHHHHHHHHHHHc--CCChhhHHhhhhccCCceeccccccchhhhh
Q 037779          248 GVFVGSGVFKSGDPVRRARAIVQAVTN--YSDPDVLAEVSCGLGEAMVGIDLNDVKVERY  305 (310)
Q Consensus       248 gV~VGsai~~~~dp~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (310)
                      +|+||++||+++||.+.+++|.....+  +-.-.--.+.+...|.++.|+.|- -+-.||
T Consensus       232 avLVGealmr~~d~~~~~~~l~~~~~KICGit~~eda~~a~~~Gad~iGfIf~-~~SpR~  290 (452)
T 1pii_A          232 GFLIGSALMAHDDLHAAVRRVLLGENKVCGLTRGQDAKAAYDAGAIYGGLIFV-ATSPRC  290 (452)
T ss_dssp             EEEECHHHHTCSCHHHHHHHHHHCSCEECCCCSHHHHHHHHHHTCSEEEEECC-TTCTTB
T ss_pred             EEEEcHHHcCCcCHHHHHHHHHHHhccccCCCcHHHHHHHHhcCCCEEEeecC-CCCCCC
Confidence            999999999999999999998753111  001122256667789999999983 234455

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=99.96  E-value=2.4e-28  Score=225.97  Aligned_cols=278  Identities=72%  Similarity=1.126  Sum_probs=208.0

Q ss_pred             ccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHH
Q 037779           28 VGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEA  107 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~  107 (310)
                      .++.++|+++.|..+...++++.+.++|+++|+..+.+|++.++++|..+..+++.++++++.+++|++++..+++.+++
T Consensus        14 ~~~~~~~~~~~i~~~~~~~~a~~~~~~Ga~~i~~~e~v~~~~~~~~G~~~~~~~~~i~~i~~~~~~Pvi~~~~~~~~~~~   93 (297)
T 2zbt_A           14 TGFAEMFKGGVIMDVTTPEQAVIAEEAGAVAVMALERVPADIRAQGGVARMSDPKIIKEIMAAVSIPVMAKVRIGHFVEA   93 (297)
T ss_dssp             CSSSGGGTTEEEEEESSHHHHHHHHHHTCSEEEECSSCHHHHHHTTCCCCCCCHHHHHHHHTTCSSCEEEEEETTCHHHH
T ss_pred             HHHHHHhhCCeeeeechHHHHHHHHHCCCcEEEeccccchHHHhhcCCccCCCHHHHHHHHHhcCCCeEEEeccCCHHHH
Confidence            34457889999888888999999999999999543467788788888777888999999999999999988777766889


Q ss_pred             HHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcc
Q 037779          108 QILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGD  187 (310)
Q Consensus       108 ~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~  187 (310)
                      +.+.++|||.|+.+...++.++.+.+.++.+++.++++++|++++..+.+.|+|+|+++|+...+.+.++..+.+.+...
T Consensus        94 ~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~i~l~~~v~~~~~~~~a~~~Gad~I~v~G~~~~g~~~e~~~~~~~~~~~  173 (297)
T 2zbt_A           94 MILEAIGVDFIDESEVLTPADEEHHIDKWKFKVPFVCGARNLGEALRRIAEGAAMIRTKGEAGTGNVVEAVRHARTMWKE  173 (297)
T ss_dssp             HHHHHTTCSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHTTCSEEEECCCSSSCCTHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCEEeeeCCCChHHHHHHHHHhCCCceEEeecCCHHHHHHHHHcCCCEEEEcccccCcchHHHHhhHHHHHHH
Confidence            99999999999744433444444445444457888889999999999999999999999876555666676665554443


Q ss_pred             eecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHH
Q 037779          188 IRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARA  267 (310)
Q Consensus       188 ~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~  267 (310)
                      ++.+...++....+........++.++.+++..++|+++++.|||+|++++.+++++|||+|++||+|++++||...+++
T Consensus       174 i~~~~g~t~~~~~~~~~~~~~~~~~i~~l~~~~~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~~~dp~~~~~~  253 (297)
T 2zbt_A          174 IRYVQSLREDELMAYAKEIGAPFELVKWVHDHGRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKSGDPRKRARA  253 (297)
T ss_dssp             HHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHSSCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGGSSCHHHHHHH
T ss_pred             HHHcCCcCCCCchhhhhcchhhHHHHHHHHHhcCCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHH
Confidence            33222122111000000123467788888877778984338999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCChhhHHhhhhccCCceeccccccchhhhh
Q 037779          268 IVQAVTNYSDPDVLAEVSCGLGEAMVGIDLNDVKVERY  305 (310)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (310)
                      |++.++.+.+|..+.++++.+|.++.++++...|-|.+
T Consensus       254 l~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  291 (297)
T 2zbt_A          254 IVRAVAHYNDPEVLAEVSEDLGEPMVGINLDQLKEEER  291 (297)
T ss_dssp             HHHHHHTTTCHHHHHHHHTTCCCCC-------------
T ss_pred             HHHHHHHHhchHhhhHHHHhcCceeEEeechhcccccc
Confidence            99999999999999999999999999999998776543

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=99.87  E-value=2.3e-21  Score=172.79  Aligned_cols=174  Identities=22%  Similarity=0.286  Sum_probs=135.4

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEe---ec------ccc-chHHHHHHHHcCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMA---KA------RIG-HFVEAQILEAIGV  115 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~---kd------~i~-~~~~~~~~~~aGa  115 (310)
                      ++|++|.++|+.+|+.            ++     ++.++++|+.+++|++.   ++      ++. +.++++.+.++||
T Consensus        40 ~~A~a~~~~Ga~~i~~------------~~-----~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aGa  102 (229)
T 3q58_A           40 AMAQAAASAGAVAVRI------------EG-----IENLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGA  102 (229)
T ss_dssp             HHHHHHHHTTCSEEEE------------ES-----HHHHHHHGGGCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTC
T ss_pred             HHHHHHHHCCCcEEEE------------CC-----HHHHHHHHHhcCCCEEEEEeecCCCCceEeCccHHHHHHHHHcCC
Confidence            7899999999999842            12     78999999999999983   33      222 2357788899999


Q ss_pred             Ceee-ec-CCCCh---hHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceec
Q 037779          116 DYVD-ES-EVLTP---ADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRV  190 (310)
Q Consensus       116 d~v~-~~-~~~~~---~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~  190 (310)
                      |.|+ +. ....|   .++.+.+++  .++.++++++|.++++++.+.|+|+|+++...+++.                 
T Consensus       103 d~I~l~~~~~~~p~~l~~~i~~~~~--~g~~v~~~v~t~eea~~a~~~Gad~Ig~~~~g~t~~-----------------  163 (229)
T 3q58_A          103 DIIAFDASFRSRPVDIDSLLTRIRL--HGLLAMADCSTVNEGISCHQKGIEFIGTTLSGYTGP-----------------  163 (229)
T ss_dssp             SEEEEECCSSCCSSCHHHHHHHHHH--TTCEEEEECSSHHHHHHHHHTTCSEEECTTTTSSSS-----------------
T ss_pred             CEEEECccccCChHHHHHHHHHHHH--CCCEEEEecCCHHHHHHHHhCCCCEEEecCccCCCC-----------------
Confidence            9987 33 22233   455555544  479999999999999999999999998764433321                 


Q ss_pred             ccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 037779          191 LRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ  270 (310)
Q Consensus       191 l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~  270 (310)
                       ..           ...+++++++.+++. ++||  |++|||+|++|+.+++++||+||+|||+|++   |...+++|.+
T Consensus       164 -~~-----------~~~~~~~li~~l~~~-~ipv--IA~GGI~t~~d~~~~~~~GadgV~VGsai~~---p~~~~~~f~~  225 (229)
T 3q58_A          164 -IT-----------PVEPDLAMVTQLSHA-GCRV--IAEGRYNTPALAANAIEHGAWAVTVGSAITR---IEHICQWFSH  225 (229)
T ss_dssp             -CC-----------CSSCCHHHHHHHHTT-TCCE--EEESSCCSHHHHHHHHHTTCSEEEECHHHHC---HHHHHHHHHH
T ss_pred             -Cc-----------CCCCCHHHHHHHHHc-CCCE--EEECCCCCHHHHHHHHHcCCCEEEEchHhcC---hHHHHHHHHH
Confidence             00           123468888888876 8999  6799999999999999999999999999997   7888888888


Q ss_pred             HHH
Q 037779          271 AVT  273 (310)
Q Consensus       271 ~~~  273 (310)
                      +++
T Consensus       226 ~~~  228 (229)
T 3q58_A          226 AVK  228 (229)
T ss_dssp             HHC
T ss_pred             HHh
Confidence            764

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=99.86  E-value=1.3e-20  Score=168.28  Aligned_cols=175  Identities=23%  Similarity=0.256  Sum_probs=135.9

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEe---ec------ccc-chHHHHHHHHcCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMA---KA------RIG-HFVEAQILEAIGV  115 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~---kd------~i~-~~~~~~~~~~aGa  115 (310)
                      ++|++|.++|+.+|+.            ++     ++.++++++.+++|++.   ++      ++. +.++++.+.++||
T Consensus        40 ~~A~a~~~~Ga~~i~~------------~~-----~~~i~~ir~~v~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~Ga  102 (232)
T 3igs_A           40 AMALAAEQAGAVAVRI------------EG-----IDNLRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDALAQAGA  102 (232)
T ss_dssp             HHHHHHHHTTCSEEEE------------ES-----HHHHHHHHTTCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTC
T ss_pred             HHHHHHHHCCCeEEEE------------CC-----HHHHHHHHHhcCCCEEEEEeecCCCcceEeCccHHHHHHHHHcCC
Confidence            7899999999999842            12     78999999999999974   33      222 3357788899999


Q ss_pred             Ceee-ecC-CCCh---hHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceec
Q 037779          116 DYVD-ESE-VLTP---ADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRV  190 (310)
Q Consensus       116 d~v~-~~~-~~~~---~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~  190 (310)
                      |.|+ +.. ...|   .++.+.+++  .++.++++++|.++++++.+.|+|+|+++...+++.                 
T Consensus       103 d~V~l~~~~~~~p~~l~~~i~~~~~--~g~~v~~~v~t~eea~~a~~~Gad~Ig~~~~g~t~~-----------------  163 (232)
T 3igs_A          103 AIIAVDGTARQRPVAVEALLARIHH--HHLLTMADCSSVDDGLACQRLGADIIGTTMSGYTTP-----------------  163 (232)
T ss_dssp             SEEEEECCSSCCSSCHHHHHHHHHH--TTCEEEEECCSHHHHHHHHHTTCSEEECTTTTSSSS-----------------
T ss_pred             CEEEECccccCCHHHHHHHHHHHHH--CCCEEEEeCCCHHHHHHHHhCCCCEEEEcCccCCCC-----------------
Confidence            9987 332 2233   455555544  479999999999999999999999998764333321                 


Q ss_pred             ccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 037779          191 LRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ  270 (310)
Q Consensus       191 l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~  270 (310)
                       .           +...+++++++.+++. ++||  |++|||+|++|+.+++++||+||+|||+|++   |...+++|.+
T Consensus       164 -~-----------~~~~~~~~~i~~l~~~-~ipv--IA~GGI~t~~d~~~~~~~GadgV~VGsal~~---p~~~~~~~~~  225 (232)
T 3igs_A          164 -D-----------TPEEPDLPLVKALHDA-GCRV--IAEGRYNSPALAAEAIRYGAWAVTVGSAITR---LEHICGWYND  225 (232)
T ss_dssp             -S-----------CCSSCCHHHHHHHHHT-TCCE--EEESCCCSHHHHHHHHHTTCSEEEECHHHHC---HHHHHHHHHH
T ss_pred             -C-----------CCCCCCHHHHHHHHhc-CCcE--EEECCCCCHHHHHHHHHcCCCEEEEehHhcC---HHHHHHHHHH
Confidence             0           0123468888888876 8999  6799999999999999999999999999996   8888899988


Q ss_pred             HHHc
Q 037779          271 AVTN  274 (310)
Q Consensus       271 ~~~~  274 (310)
                      .++.
T Consensus       226 ~i~~  229 (232)
T 3igs_A          226 ALKK  229 (232)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8763

>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}

Probab=99.77  E-value=5.1e-18  Score=152.33  Aligned_cols=184  Identities=15%  Similarity=0.131  Sum_probs=131.8

Q ss_pred             HHHHHHHHHcCCcEEEeccccc---------chhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCC
Q 037779           45 PEQARIAEEAGACAVMALERVP---------ADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGV  115 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~---------~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGa  115 (310)
                      .+.++.+.++|+++| +|+...         .+.+.+     ......++++++..++|++++|.+      +.+.++||
T Consensus        46 ~~~~~~al~~Gv~~v-qlR~K~~~~~~~~~~l~~~~~-----~~~a~~l~~l~~~~~~~liInd~~------~lA~~~gA  113 (243)
T 3o63_A           46 AQFAEAALAGGVDII-QLRDKGSPGELRFGPLQARDE-----LAACEILADAAHRYGALFAVNDRA------DIARAAGA  113 (243)
T ss_dssp             HHHHHHHHHTTCSEE-EECCTTCHHHHHHCSCCHHHH-----HHHHHHHHHHHHHTTCEEEEESCH------HHHHHHTC
T ss_pred             HHHHHHHHHCCCCEE-EEccCCCCccccccCCCHHHH-----HHHHHHHHHHHHhhCCEEEEeCHH------HHHHHhCC
Confidence            478889999999998 563111         001111     111344556667779999998764      35778999


Q ss_pred             Ceee-ecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceeccccc
Q 037779          116 DYVD-ESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNM  194 (310)
Q Consensus       116 d~v~-~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~  194 (310)
                      |+|+ ....++..++.+.   .+.+..+.+++||.+|+.++.+.|+|||+++ +.+.+                     .
T Consensus       114 dGVHLg~~dl~~~~~r~~---~~~~~~iG~S~ht~~Ea~~A~~~GaDyI~vg-pvf~T---------------------~  168 (243)
T 3o63_A          114 DVLHLGQRDLPVNVARQI---LAPDTLIGRSTHDPDQVAAAAAGDADYFCVG-PCWPT---------------------P  168 (243)
T ss_dssp             SEEEECTTSSCHHHHHHH---SCTTCEEEEEECSHHHHHHHHHSSCSEEEEC-CSSCC---------------------C
T ss_pred             CEEEecCCcCCHHHHHHh---hCCCCEEEEeCCCHHHHHHHhhCCCCEEEEc-CccCC---------------------C
Confidence            9999 4455554444332   3457889999999999999999999999995 32211                     1


Q ss_pred             CchhHHhhhccCCCcHHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779          195 DDDEVFTFAKNIAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV  272 (310)
Q Consensus       195 ~~d~~~~~~~~~~~~~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~  272 (310)
                      ++..      .....++.++++.+.  .++||+  +.||| +++++.+++++||+||+|||+|++++||.+.+++|++.+
T Consensus       169 tK~~------~~~~gl~~l~~~~~~~~~~iPvv--AiGGI-~~~ni~~~~~aGa~gvav~sai~~a~dp~~a~~~l~~~~  239 (243)
T 3o63_A          169 TKPG------RAAPGLGLVRVAAELGGDDKPWF--AIGGI-NAQRLPAVLDAGARRIVVVRAITSADDPRAAAEQLRSAL  239 (243)
T ss_dssp             C-----------CCCHHHHHHHHTC---CCCEE--EESSC-CTTTHHHHHHTTCCCEEESHHHHTCSSHHHHHHHHHHHH
T ss_pred             CCCC------cchhhHHHHHHHHHhccCCCCEE--EecCC-CHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHH
Confidence            1100      012356777877765  479995  56999 799999999999999999999999999999999999888


Q ss_pred             Hc
Q 037779          273 TN  274 (310)
Q Consensus       273 ~~  274 (310)
                      ++
T Consensus       240 ~~  241 (243)
T 3o63_A          240 TA  241 (243)
T ss_dssp             HT
T ss_pred             Hh
Confidence            64

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=99.77  E-value=1.8e-17  Score=150.14  Aligned_cols=200  Identities=17%  Similarity=0.188  Sum_probs=133.7

Q ss_pred             ceeeecCCccccCCC-HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHH
Q 037779           30 LAQMLRGGVIMDVVT-PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQ  108 (310)
Q Consensus        30 ~~~~l~~g~i~~~~~-~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~  108 (310)
                      ..+++.+|......+ .++++.+.++|+++|+..     |.... |.....+.+.++++++.+++|+++++++.+.++++
T Consensus        17 ~~v~~~~g~~~~~~~~~~~a~~~~~~Ga~~i~v~-----d~~~~-~~~~g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~   90 (266)
T 2w6r_A           17 FMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLT-----SIDRD-GTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFL   90 (266)
T ss_dssp             EEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEE-----ETTTS-SCSSCCCHHHHHHHGGGCCSCEEEESCCCSTHHHH
T ss_pred             EEEEEcCCeeccCCCHHHHHHHHHHCCCCEEEEE-----ecCcc-cCCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHH
Confidence            567788887755445 489999999999999543     33211 11123468999999999999999999988777888


Q ss_pred             HHHHcCCCeee-ecCCC----ChhHHHHHHHhcC--C-CCcEEeecC-------------------CHHH-HHHHHHhCC
Q 037779          109 ILEAIGVDYVD-ESEVL----TPADEENHINKHN--F-RVPFVCGCR-------------------NLGE-SLRRIREGA  160 (310)
Q Consensus       109 ~~~~aGad~v~-~~~~~----~~~~~~~~~~~~~--~-~l~v~~~v~-------------------t~~e-a~~a~~~Ga  160 (310)
                      .+.++|||.++ .+..+    ++..+.+.++..+  . .+.+.++++                   +..| ++++.+.|+
T Consensus        91 ~~~~~Gad~v~lg~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~  170 (266)
T 2w6r_A           91 EAFLAGADKALAASVFHFREIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGA  170 (266)
T ss_dssp             HHHHHTCSEEECCCCC------CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTC
T ss_pred             HHHHcCCcHhhhhHHHHhCCCCHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEECCCceecchhHHHHHHHHHHcCC
Confidence            88899999998 44444    4555555443333  1 133455552                   3344 577778899


Q ss_pred             CEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHH
Q 037779          161 AMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM  240 (310)
Q Consensus       161 d~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~  240 (310)
                      +.|.+++...++.                               ..+.++++++.+++..++||  |++|||++++|+.+
T Consensus       171 ~~i~~t~~~~~g~-------------------------------~~g~~~~~i~~l~~~~~ipv--ia~GGI~~~ed~~~  217 (266)
T 2w6r_A          171 GEILLTSIDRDGT-------------------------------KSGYDTEMIRFVRPLTTLPI--IASGGAGKMEHFLE  217 (266)
T ss_dssp             SEEEEEETTTTTT-------------------------------CSCCCHHHHHHHGGGCCSCE--EEESCCCSHHHHHH
T ss_pred             CEEEEEeecCCCC-------------------------------cCCCCHHHHHHHHHHcCCCE--EEeCCCCCHHHHHH
Confidence            9888763211110                               12346888899988788999  67899999999999


Q ss_pred             HHHcCCCEEEEccccccCCCHHHHHHHH
Q 037779          241 MMQLGCDGVFVGSGVFKSGDPVRRARAI  268 (310)
Q Consensus       241 ~~~~GadgV~VGsai~~~~dp~~~~~~~  268 (310)
                      ++++||+||+|||+|++.+++...++++
T Consensus       218 ~~~~Gadgv~vgsal~~~~~~~~~~~~~  245 (266)
T 2w6r_A          218 AFLAGADAALAASVFHFREIDMRELKEY  245 (266)
T ss_dssp             HHHHTCSEEEESTTTC------------
T ss_pred             HHHcCCHHHHccHHHHcCCCCHHHHHHH
Confidence            9999999999999999998765544443

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=99.76  E-value=8.7e-18  Score=150.41  Aligned_cols=201  Identities=23%  Similarity=0.203  Sum_probs=136.4

Q ss_pred             ccceeeecCCccccC---CCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccc
Q 037779           28 VGLAQMLRGGVIMDV---VTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGH  103 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~---~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~  103 (310)
                      .+.+++|.+|.....   .++ +.++.++++|+++++..    ..-..|.+.  ..+ +.++++++.+++|++++.++.+
T Consensus        14 ~g~~V~~~~g~~~~~~~~~d~~~~a~~~~~~Gad~i~v~----~~d~~~~~~--~~~-~~i~~i~~~~~ipv~v~ggI~~   86 (244)
T 1vzw_A           14 DGQAVRLVHGESGTETSYGSPLEAALAWQRSGAEWLHLV----DLDAAFGTG--DNR-ALIAEVAQAMDIKVELSGGIRD   86 (244)
T ss_dssp             TTEEBC--------CCBCCCHHHHHHHHHHTTCSEEEEE----EHHHHHTSC--CCH-HHHHHHHHHCSSEEEEESSCCS
T ss_pred             CCEEEEeeccccccceecCCHHHHHHHHHHcCCCEEEEe----cCchhhcCC--ChH-HHHHHHHHhcCCcEEEECCcCC
Confidence            566777777765433   244 78999999999999654    111234333  334 7899999999999999999987


Q ss_pred             hHHHHHHHHcCCCeeee-cCCC-ChhHHHHHHHhcCCCCcEEeecC--------------CHHH-HHHHHHhCCCEEEEe
Q 037779          104 FVEAQILEAIGVDYVDE-SEVL-TPADEENHINKHNFRVPFVCGCR--------------NLGE-SLRRIREGAAMIRTK  166 (310)
Q Consensus       104 ~~~~~~~~~aGad~v~~-~~~~-~~~~~~~~~~~~~~~l~v~~~v~--------------t~~e-a~~a~~~Gad~I~v~  166 (310)
                      .++++.+.++|||.|+. +..+ .|..+.+.++..+..+.+.++++              +..| ++.+.+.|++.|.++
T Consensus        87 ~~~~~~~l~~Gad~V~lg~~~l~~p~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~~~~~e~~~~~~~~G~~~i~~~  166 (244)
T 1vzw_A           87 DDTLAAALATGCTRVNLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEGCARYVVT  166 (244)
T ss_dssp             HHHHHHHHHTTCSEEEECHHHHHCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHHHHHHHHTTCCCEEEE
T ss_pred             HHHHHHHHHcCCCEEEECchHhhCHHHHHHHHHHcCCcEEEEEEccCCEEEEcCcccCCCCHHHHHHHHHhCCCCEEEEe
Confidence            78888899999999983 3222 34445555544432344555654              5444 577788899988776


Q ss_pred             cCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc--
Q 037779          167 GEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL--  244 (310)
Q Consensus       167 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~--  244 (310)
                      +....+                          .     ..+.+++.++.+++..++||  +++|||++++++.+++++  
T Consensus       167 ~~~~~~--------------------------~-----~~g~~~~~~~~i~~~~~ipv--ia~GGI~~~~d~~~~~~~~~  213 (244)
T 1vzw_A          167 DIAKDG--------------------------T-----LQGPNLELLKNVCAATDRPV--VASGGVSSLDDLRAIAGLVP  213 (244)
T ss_dssp             EC--------------------------------------CCCHHHHHHHHHTCSSCE--EEESCCCSHHHHHHHHTTGG
T ss_pred             ccCccc--------------------------c-----cCCCCHHHHHHHHHhcCCCE--EEECCCCCHHHHHHHHhhcc
Confidence            321110                          0     11346788888888778999  678999999999999998  


Q ss_pred             -CCCEEEEccccccCCCHHHHHHHH
Q 037779          245 -GCDGVFVGSGVFKSGDPVRRARAI  268 (310)
Q Consensus       245 -GadgV~VGsai~~~~dp~~~~~~~  268 (310)
                       ||++|++||+|+.+++....+.++
T Consensus       214 ~Gadgv~vG~al~~~~~~~~~~~~~  238 (244)
T 1vzw_A          214 AGVEGAIVGKALYAKAFTLEEALEA  238 (244)
T ss_dssp             GTEEEEEECHHHHTTSSCHHHHHHH
T ss_pred             CCCceeeeeHHHHcCCCCHHHHHHH
Confidence             999999999999988665444443

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=99.76  E-value=4.5e-18  Score=152.19  Aligned_cols=200  Identities=16%  Similarity=0.143  Sum_probs=144.3

Q ss_pred             ccceeeecCCccccC----CC-HHHHHHHHHcCCcEEEecccccchhhh-cCCCCCCCChHHHHHHHhhcCcceEeeccc
Q 037779           28 VGLAQMLRGGVIMDV----VT-PEQARIAEEAGACAVMALERVPADIRA-QGGVARMSDPQLIKQIKSSVTIPVMAKARI  101 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~----~~-~~~a~~~~~~Ga~~I~~l~~~~~d~r~-~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i  101 (310)
                      .+.++++++|+....    .+ .++++.+.++|+++|+..     |... +.+  ...+.+.+++++ .+++|+++.+++
T Consensus        11 ~g~~vk~~~G~~~~~~~~~~~~~~~a~~~~~~Gad~i~v~-----d~~~~~~~--~~~~~~~i~~i~-~~~ipvi~~Ggi   82 (241)
T 1qo2_A           11 RGKVARMIKGRKENTIFYEKDPVELVEKLIEEGFTLIHVV-----DLSNAIEN--SGENLPVLEKLS-EFAEHIQIGGGI   82 (241)
T ss_dssp             TTEEEEEGGGCGGGEEEESSCHHHHHHHHHHTTCCCEEEE-----EHHHHHHC--CCTTHHHHHHGG-GGGGGEEEESSC
T ss_pred             CCEEEEEeccccccceecCcCHHHHHHHHHHcCCCEEEEe-----cccccccC--CchhHHHHHHHH-hcCCcEEEECCC
Confidence            567888999987665    34 489999999999998543     3221 111  234588899999 889999999999


Q ss_pred             cchHHHHHHHHcCCCeeee-cCCCChhHHHHHHHhcCCCCcEEeecC---------------CHHH-HHHHHHhCCCEEE
Q 037779          102 GHFVEAQILEAIGVDYVDE-SEVLTPADEENHINKHNFRVPFVCGCR---------------NLGE-SLRRIREGAAMIR  164 (310)
Q Consensus       102 ~~~~~~~~~~~aGad~v~~-~~~~~~~~~~~~~~~~~~~l~v~~~v~---------------t~~e-a~~a~~~Gad~I~  164 (310)
                      .+.++++.+.++|||.|+. +..+..+++...++..+..+.+.++++               +..| ++++.+.|++.+.
T Consensus        83 ~~~~~~~~~~~~Gad~V~lg~~~l~~p~~~~~~~~~g~~i~~~~d~~~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~  162 (241)
T 1qo2_A           83 RSLDYAEKLRKLGYRRQIVSSKVLEDPSFLKSLREIDVEPVFSLDTRGGRVAFKGWLAEEEIDPVSLLKRLKEYGLEEIV  162 (241)
T ss_dssp             CSHHHHHHHHHTTCCEEEECHHHHHCTTHHHHHHTTTCEEEEEEEEETTEECCTTCSSCSCCCHHHHHHHHHTTTCCEEE
T ss_pred             CCHHHHHHHHHCCCCEEEECchHhhChHHHHHHHHcCCcEEEEEEecCCEEEECCceecCCCCHHHHHHHHHhCCCCEEE
Confidence            8888888899999999983 322222333344443432245556663               5555 4567788999887


Q ss_pred             EecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc
Q 037779          165 TKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL  244 (310)
Q Consensus       165 v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~  244 (310)
                      +++.                          ++|+.     ..+.++++++.+++..++||  |++|||++++|+.+++++
T Consensus       163 ~t~~--------------------------~~~g~-----~~g~~~~~i~~l~~~~~iPv--ia~GGI~~~~d~~~~~~~  209 (241)
T 1qo2_A          163 HTEI--------------------------EKDGT-----LQEHDFSLTKKIAIEAEVKV--LAAGGISSENSLKTAQKV  209 (241)
T ss_dssp             EEET--------------------------THHHH-----TCCCCHHHHHHHHHHHTCEE--EEESSCCSHHHHHHHHHH
T ss_pred             EEee--------------------------ccccc-----CCcCCHHHHHHHHHhcCCcE--EEECCCCCHHHHHHHHhc
Confidence            7632                          11111     12346888898888778999  678999999999999998


Q ss_pred             -----C-CCEEEEccccccCCCHHHHHHHH
Q 037779          245 -----G-CDGVFVGSGVFKSGDPVRRARAI  268 (310)
Q Consensus       245 -----G-adgV~VGsai~~~~dp~~~~~~~  268 (310)
                           | +|||+|||+|++++.+...++++
T Consensus       210 ~~~~~G~adgv~vgsal~~~~~~~~~~~~~  239 (241)
T 1qo2_A          210 HTETNGLLKGVIVGRAFLEGILTVEVMKRY  239 (241)
T ss_dssp             HHHTTTSEEEEEECHHHHTTSSCHHHHHHH
T ss_pred             ccccCCeEeEEEeeHHHHcCCCCHHHHHHH
Confidence                 9 99999999999988766555443

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=99.75  E-value=9.1e-18  Score=150.09  Aligned_cols=199  Identities=20%  Similarity=0.170  Sum_probs=140.8

Q ss_pred             ccceeeecCCccccC---CCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccc
Q 037779           28 VGLAQMLRGGVIMDV---VTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGH  103 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~---~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~  103 (310)
                      .+.++++.+|.....   .++ +.++.+.++|+++|+..    ..-..|.+.  ... +.++++++.+++|+++++++.+
T Consensus        13 ~g~~V~~~~g~~~~~~~~~d~~~~a~~~~~~Gad~i~v~----~~d~~~~~~--~~~-~~i~~i~~~~~ipv~v~ggi~~   85 (244)
T 2y88_A           13 EGRAVRLVQGKAGSQTEYGSAVDAALGWQRDGAEWIHLV----DLDAAFGRG--SNH-ELLAEVVGKLDVQVELSGGIRD   85 (244)
T ss_dssp             TTEEEEEETTEEEEEEEEEEHHHHHHHHHHTTCSEEEEE----EHHHHTTSC--CCH-HHHHHHHHHCSSEEEEESSCCS
T ss_pred             CCEEEEeeccccccceecCCHHHHHHHHHHcCCCEEEEE----cCcccccCC--ChH-HHHHHHHHhcCCcEEEECCCCC
Confidence            566777777765433   244 78999999999999755    111234332  233 8899999999999999999988


Q ss_pred             hHHHHHHHHcCCCeeee-cCCC-ChhHHHHHHHhcCCCCcEEeecC------------------C-HHHHHHHHHhCCCE
Q 037779          104 FVEAQILEAIGVDYVDE-SEVL-TPADEENHINKHNFRVPFVCGCR------------------N-LGESLRRIREGAAM  162 (310)
Q Consensus       104 ~~~~~~~~~aGad~v~~-~~~~-~~~~~~~~~~~~~~~l~v~~~v~------------------t-~~ea~~a~~~Gad~  162 (310)
                      .++++.+.++|||.|+. ...+ .|..+.+.++..+..+.+.++++                  + .+.++.+.+.|++.
T Consensus        86 ~~~~~~~l~~Gad~V~lg~~~l~~p~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~g~~~~~~~~~e~~~~~~~~G~~~  165 (244)
T 2y88_A           86 DESLAAALATGCARVNVGTAALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDLWDVLERLDSEGCSR  165 (244)
T ss_dssp             HHHHHHHHHTTCSEEEECHHHHHCHHHHHHHHHHHGGGEEEEEEEEEETTEEEEEEGGGTEEEEEHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHcCCCEEEECchHhhChHHHHHHHHHcCCCEEEEEeccccCCCCEEEECCccCCCCCHHHHHHHHHhCCCCE
Confidence            78889999999999983 3222 34444444444332244444544                  2 45567788889998


Q ss_pred             EEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHH
Q 037779          163 IRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM  242 (310)
Q Consensus       163 I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~  242 (310)
                      |.+++....+.                               ..+.+++.++.+++..++||  |++|||++++|+.+++
T Consensus       166 i~~~~~~~~~~-------------------------------~~g~~~~~~~~l~~~~~ipv--ia~GGI~~~~d~~~~~  212 (244)
T 2y88_A          166 FVVTDITKDGT-------------------------------LGGPNLDLLAGVADRTDAPV--IASGGVSSLDDLRAIA  212 (244)
T ss_dssp             EEEEETTTTTT-------------------------------TSCCCHHHHHHHHTTCSSCE--EEESCCCSHHHHHHHH
T ss_pred             EEEEecCCccc-------------------------------cCCCCHHHHHHHHHhCCCCE--EEECCCCCHHHHHHHH
Confidence            88764311110                               01336788888888778999  6789999999999999


Q ss_pred             Hc---CCCEEEEccccccCCCHHHHHH
Q 037779          243 QL---GCDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       243 ~~---GadgV~VGsai~~~~dp~~~~~  266 (310)
                      ++   |+++|++||+|+.+++....+.
T Consensus       213 ~~~~~Gad~v~vG~al~~~~~~~~~~~  239 (244)
T 2y88_A          213 TLTHRGVEGAIVGKALYARRFTLPQAL  239 (244)
T ss_dssp             TTGGGTEEEEEECHHHHTTSSCHHHHH
T ss_pred             hhccCCCCEEEEcHHHHCCCcCHHHHH
Confidence            98   9999999999999886654433

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=99.74  E-value=5.4e-17  Score=143.26  Aligned_cols=179  Identities=22%  Similarity=0.230  Sum_probs=132.6

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEe---ecc------cc-chHHHHHHHHcCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMA---KAR------IG-HFVEAQILEAIGV  115 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~---kd~------i~-~~~~~~~~~~aGa  115 (310)
                      ++++++.++|+++++..                 +++.++++++.+++|++.   +++      +. +.+.++.+.++|+
T Consensus        27 ~~a~~~~~~Ga~~i~~~-----------------~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~Ga   89 (223)
T 1y0e_A           27 KMALAAYEGGAVGIRAN-----------------TKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQC   89 (223)
T ss_dssp             HHHHHHHHHTCSEEEEE-----------------SHHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHTC
T ss_pred             HHHHHHHHCCCeeeccC-----------------CHHHHHHHHHhcCCCEEeeeccCCCccccccCCcHHHHHHHHhCCC
Confidence            78999999999998421                 167899999999999962   221      11 2356778889999


Q ss_pred             Ceee-ecCCC-----ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhccee
Q 037779          116 DYVD-ESEVL-----TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIR  189 (310)
Q Consensus       116 d~v~-~~~~~-----~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~  189 (310)
                      |.|+ .....     +..++++.+++..+++.++++++|.+|+.++.+.|+|+++++...+++..               
T Consensus        90 d~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~~~~~t~~e~~~~~~~G~d~i~~~~~g~t~~~---------------  154 (223)
T 1y0e_A           90 EVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYT---------------  154 (223)
T ss_dssp             SEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTS---------------
T ss_pred             CEEEEeeecccCcccCHHHHHHHHHHhCCCceEEecCCCHHHHHHHHHcCCCEEEeCCCcCcCCC---------------
Confidence            9987 32221     23577777777545788999999999999999999999987543333210               


Q ss_pred             cccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 037779          190 VLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV  269 (310)
Q Consensus       190 ~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~  269 (310)
                        ....         .....++.++.+++..++||  +++|||++++++.+++++|||+|++||+|++   |...+++|+
T Consensus       155 --~~~~---------~~~~~~~~~~~~~~~~~ipv--ia~GGI~~~~~~~~~~~~Gad~v~vG~al~~---p~~~~~~~~  218 (223)
T 1y0e_A          155 --QGQL---------LYQNDFQFLKDVLQSVDAKV--IAEGNVITPDMYKRVMDLGVHCSVVGGAITR---PKEITKRFV  218 (223)
T ss_dssp             --TTCC---------TTHHHHHHHHHHHHHCCSEE--EEESSCCSHHHHHHHHHTTCSEEEECHHHHC---HHHHHHHHH
T ss_pred             --CCCC---------CCcccHHHHHHHHhhCCCCE--EEecCCCCHHHHHHHHHcCCCEEEEChHHcC---cHHHHHHHH
Confidence              0000         01224667777777667899  6789999999999999999999999999997   777888887


Q ss_pred             HHH
Q 037779          270 QAV  272 (310)
Q Consensus       270 ~~~  272 (310)
                      +.+
T Consensus       219 ~~~  221 (223)
T 1y0e_A          219 QVM  221 (223)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            654

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=99.72  E-value=1.7e-16  Score=142.52  Aligned_cols=186  Identities=18%  Similarity=0.202  Sum_probs=131.0

Q ss_pred             CCH-HHHHHHHHcCCcEEEecccccchhh-hcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeee
Q 037779           43 VTP-EQARIAEEAGACAVMALERVPADIR-AQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE  120 (310)
Q Consensus        43 ~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r-~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~  120 (310)
                      .++ ++++.++++|+++++...     .. .+.+  ...+.+.++++++.+++|+++++++.+.++++.+.++|||.|+.
T Consensus        30 ~d~~~~a~~~~~~Gad~i~v~d-----~~~~~~~--~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~l  102 (253)
T 1thf_D           30 GDPVELGKFYSEIGIDELVFLD-----ITASVEK--RKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSI  102 (253)
T ss_dssp             TCHHHHHHHHHHTTCCEEEEEE-----SSCSSSH--HHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred             cCHHHHHHHHHHcCCCEEEEEC-----CchhhcC--CcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence            454 789999999999986552     11 1111  12236778899998999999999998878888899999999984


Q ss_pred             c-CCC-ChhHHHHHHHhcCCC-CcEEeecC-------------------C-HHHHHHHHHhCCCEEEEecCCCCCchHHH
Q 037779          121 S-EVL-TPADEENHINKHNFR-VPFVCGCR-------------------N-LGESLRRIREGAAMIRTKGEAGTGNIVEA  177 (310)
Q Consensus       121 ~-~~~-~~~~~~~~~~~~~~~-l~v~~~v~-------------------t-~~ea~~a~~~Gad~I~v~g~~~~~~~~~~  177 (310)
                      . ..+ .|..+.+.++..+.. +.+.++++                   + .+.++.+.+.|++.+.++....++.    
T Consensus       103 g~~~l~~p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~----  178 (253)
T 1thf_D          103 NTAAVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGT----  178 (253)
T ss_dssp             SHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTS----
T ss_pred             ChHHHhChHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCccccCCCHHHHHHHHHHCCCCEEEEEeccCCCC----
Confidence            3 222 333444444443322 34555653                   2 3446777788998877753211110    


Q ss_pred             HHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          178 VRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       178 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                                                 ..+.++++++.+++..++||  |++|||++++|+.+++++|+|+|++||+|++
T Consensus       179 ---------------------------~~g~~~~~~~~l~~~~~ipv--ia~GGI~~~~d~~~~~~~Gadgv~vGsal~~  229 (253)
T 1thf_D          179 ---------------------------KSGYDTEMIRFVRPLTTLPI--IASGGAGKMEHFLEAFLAGADAALAASVFHF  229 (253)
T ss_dssp             ---------------------------CSCCCHHHHHHHGGGCCSCE--EEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred             ---------------------------CCCCCHHHHHHHHHhcCCCE--EEECCCCCHHHHHHHHHcCChHHHHHHHHHc
Confidence                                       12346888888888778999  6789999999999999999999999999999


Q ss_pred             CC-CHHHHHHHH
Q 037779          258 SG-DPVRRARAI  268 (310)
Q Consensus       258 ~~-dp~~~~~~~  268 (310)
                      ++ ++.+..+.+
T Consensus       230 ~~~~~~~~~~~l  241 (253)
T 1thf_D          230 REIDVRELKEYL  241 (253)
T ss_dssp             TCSCHHHHHHHH
T ss_pred             CCCCHHHHHHHH
Confidence            98 665555544

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=99.72  E-value=1.2e-16  Score=143.43  Aligned_cols=183  Identities=21%  Similarity=0.241  Sum_probs=128.5

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeee-cCC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE-SEV  123 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~-~~~  123 (310)
                      .++++.+.++|+++|+..     |.... +.....+.+.++++++.+++|+++..++.+.++++.+.++|||.|+. +..
T Consensus        34 ~~~a~~~~~~Gad~i~v~-----d~~~~-~~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~  107 (252)
T 1ka9_F           34 VEAARAYDEAGADELVFL-----DISAT-HEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAA  107 (252)
T ss_dssp             HHHHHHHHHHTCSCEEEE-----ECCSS-TTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHH
T ss_pred             HHHHHHHHHcCCCEEEEE-----cCCcc-ccCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEChHH
Confidence            488999999999998554     22111 11112236678999999999999999998888899999999999983 322


Q ss_pred             C-ChhHHHHHHHhcCCC-CcEEeecC--------------------CHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHH
Q 037779          124 L-TPADEENHINKHNFR-VPFVCGCR--------------------NLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHV  181 (310)
Q Consensus       124 ~-~~~~~~~~~~~~~~~-l~v~~~v~--------------------t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~  181 (310)
                      + .+..+.+.....+.. +.+.++++                    +.+.++++.+.|++.+.+++...++.        
T Consensus       108 l~~p~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~--------  179 (252)
T 1ka9_F          108 VRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGT--------  179 (252)
T ss_dssp             HHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTT--------
T ss_pred             HhCcHHHHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCccccCCcHHHHHHHHHHcCCCEEEEecccCCCC--------
Confidence            2 233343433333322 34555553                    24567788889999877763211110        


Q ss_pred             HHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCH
Q 037779          182 RSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDP  261 (310)
Q Consensus       182 ~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp  261 (310)
                                             ..+.++++++.+++..++||  |++|||++++|+.+++++|+|||+|||+|++++++
T Consensus       180 -----------------------~~g~~~~~i~~l~~~~~ipv--ia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~~~  234 (252)
T 1ka9_F          180 -----------------------KEGYDLRLTRMVAEAVGVPV--IASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIP  234 (252)
T ss_dssp             -----------------------CSCCCHHHHHHHHHHCSSCE--EEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSC
T ss_pred             -----------------------cCCCCHHHHHHHHHHcCCCE--EEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCCCC
Confidence                                   12346888899988778999  67899999999999999999999999999999844


Q ss_pred             HHHHH
Q 037779          262 VRRAR  266 (310)
Q Consensus       262 ~~~~~  266 (310)
                      ...+.
T Consensus       235 ~~~~~  239 (252)
T 1ka9_F          235 IPKLK  239 (252)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            43333

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=99.67  E-value=2e-15  Score=132.30  Aligned_cols=191  Identities=20%  Similarity=0.272  Sum_probs=134.3

Q ss_pred             ccccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeec-cccch
Q 037779           26 VKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKA-RIGHF  104 (310)
Q Consensus        26 ~~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd-~i~~~  104 (310)
                      +..++...++.-...+  -.+.++.+.++|+++|+ ++       ...    ....+.++++++.+++|+++.. .+.+.
T Consensus         5 ~~~~i~~~i~~~d~~~--~~~~~~~~~~~G~~~i~-l~-------~~~----~~~~~~i~~i~~~~~~~l~vg~g~~~~~   70 (212)
T 2v82_A            5 TKLPLIAILRGITPDE--ALAHVGAVIDAGFDAVE-IP-------LNS----PQWEQSIPAIVDAYGDKALIGAGTVLKP   70 (212)
T ss_dssp             SSSCEEEECTTCCHHH--HHHHHHHHHHHTCCEEE-EE-------TTS----TTHHHHHHHHHHHHTTTSEEEEECCCSH
T ss_pred             CCCCEEEEEeCCCHHH--HHHHHHHHHHCCCCEEE-Ee-------CCC----hhHHHHHHHHHHhCCCCeEEEeccccCH
Confidence            3456666666622110  03679999999999984 31       111    1124677788877788887742 22344


Q ss_pred             HHHHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHh
Q 037779          105 VEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSV  184 (310)
Q Consensus       105 ~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~  184 (310)
                      +.++.+.++|||+|+...  ...++.+.++.  .+..++++++|++|+..+.+.|+|++.++..   .            
T Consensus        71 ~~i~~a~~~Gad~V~~~~--~~~~~~~~~~~--~g~~~~~g~~t~~e~~~a~~~G~d~v~v~~t---~------------  131 (212)
T 2v82_A           71 EQVDALARMGCQLIVTPN--IHSEVIRRAVG--YGMTVCPGCATATEAFTALEAGAQALKIFPS---S------------  131 (212)
T ss_dssp             HHHHHHHHTTCCEEECSS--CCHHHHHHHHH--TTCEEECEECSHHHHHHHHHTTCSEEEETTH---H------------
T ss_pred             HHHHHHHHcCCCEEEeCC--CCHHHHHHHHH--cCCCEEeecCCHHHHHHHHHCCCCEEEEecC---C------------
Confidence            678899999999998332  23455555554  3566677799999999999999999997410   0            


Q ss_pred             hcceecccccCchhHHhhhccCCCcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC----
Q 037779          185 MGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS----  258 (310)
Q Consensus       185 ~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~----  258 (310)
                                   .         ...+.++.+.+..  ++||  ++.|||+ ++++.+++++|+++|++||+|+++    
T Consensus       132 -------------~---------~g~~~~~~l~~~~~~~ipv--ia~GGI~-~~~i~~~~~~Ga~gv~vGsai~~~~~~~  186 (212)
T 2v82_A          132 -------------A---------FGPQYIKALKAVLPSDIAV--FAVGGVT-PENLAQWIDAGCAGAGLGSDLYRAGQSV  186 (212)
T ss_dssp             -------------H---------HCHHHHHHHHTTSCTTCEE--EEESSCC-TTTHHHHHHHTCSEEEECTTTCCTTCCH
T ss_pred             -------------C---------CCHHHHHHHHHhccCCCeE--EEeCCCC-HHHHHHHHHcCCCEEEEChHHhCCCCCH
Confidence                         0         0235556666544  3888  6789995 999999999999999999999998    


Q ss_pred             CCHHHHHHHHHHHHHc
Q 037779          259 GDPVRRARAIVQAVTN  274 (310)
Q Consensus       259 ~dp~~~~~~~~~~~~~  274 (310)
                      +||.+.+++|++.+++
T Consensus       187 ~d~~~~~~~l~~~~~~  202 (212)
T 2v82_A          187 ERTAQQAAAFVKAYRE  202 (212)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6899999988887753

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=99.67  E-value=4.8e-15  Score=131.77  Aligned_cols=175  Identities=21%  Similarity=0.321  Sum_probs=132.2

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEe---ecc------cc-chHHHHHHHHcC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMA---KAR------IG-HFVEAQILEAIG  114 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~---kd~------i~-~~~~~~~~~~aG  114 (310)
                      .++++.+.++|+++++ +       .         +++.++.+++.+++|++.   +++      +. ..++++.+.++|
T Consensus        39 ~~~a~~~~~~G~~~i~-~-------~---------~~~~i~~i~~~~~~p~i~~~~~~~~~~~~~i~~~~~~i~~~~~~G  101 (234)
T 1yxy_A           39 PLMAKAAQEAGAVGIR-A-------N---------SVRDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALN  101 (234)
T ss_dssp             HHHHHHHHHHTCSEEE-E-------E---------SHHHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTT
T ss_pred             HHHHHHHHHCCCcEee-c-------C---------CHHHHHHHHHhCCCCEEeeEcCCCCccccccCChHHHHHHHHHcC
Confidence            5789999999999984 2       1         167899999999999952   222      22 236778888999


Q ss_pred             CCeeeec-CC------CChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEE--EecCCCCCchHHHHHHHHHhh
Q 037779          115 VDYVDES-EV------LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIR--TKGEAGTGNIVEAVRHVRSVM  185 (310)
Q Consensus       115 ad~v~~~-~~------~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~--v~g~~~~~~~~~~~~~~~~~~  185 (310)
                      ||.|+.+ ..      ....++++.+++...++.++++++|.+++..+.+.|+|+|+  +.+... +.            
T Consensus       102 ad~V~l~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~~~~~t~~ea~~a~~~Gad~i~~~v~g~~~-~~------------  168 (234)
T 1yxy_A          102 IAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTP-YS------------  168 (234)
T ss_dssp             CSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEEEECSSHHHHHHHHHTTCSEEECTTTTSST-TS------------
T ss_pred             CCEEEEcccccCCCCCccHHHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcCCCEEeeeccccCC-CC------------
Confidence            9999732 21      12356777777754578899999999999999999999993  433211 10            


Q ss_pred             cceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHH
Q 037779          186 GDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRA  265 (310)
Q Consensus       186 ~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~  265 (310)
                           ..            .....+++++.+.+. ++||  +++|||+|++++.+++++|||+|++||+|++   |...+
T Consensus       169 -----~~------------~~~~~~~~i~~~~~~-~ipv--ia~GGI~s~~~~~~~~~~Gad~v~vGsal~~---p~~~~  225 (234)
T 1yxy_A          169 -----RQ------------EAGPDVALIEALCKA-GIAV--IAEGKIHSPEEAKKINDLGVAGIVVGGAITR---PKEIA  225 (234)
T ss_dssp             -----CC------------SSSCCHHHHHHHHHT-TCCE--EEESCCCSHHHHHHHHTTCCSEEEECHHHHC---HHHHH
T ss_pred             -----cC------------CCCCCHHHHHHHHhC-CCCE--EEECCCCCHHHHHHHHHCCCCEEEEchHHhC---hHHHH
Confidence                 00            013356778888776 8999  6789999999999999999999999999998   88888


Q ss_pred             HHHHHHH
Q 037779          266 RAIVQAV  272 (310)
Q Consensus       266 ~~~~~~~  272 (310)
                      ++|++.+
T Consensus       226 ~~l~~~~  232 (234)
T 1yxy_A          226 ERFIEAL  232 (234)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            8887765

>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*

Probab=99.64  E-value=5.6e-15  Score=146.44  Aligned_cols=187  Identities=15%  Similarity=0.155  Sum_probs=130.6

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-ecCC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEV  123 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~  123 (310)
                      .+.++++.++|+++| +++....+.+.+     ......++++++..++|++++|++.      .+.++|||+|| ..+.
T Consensus        28 ~~~ve~al~~Gv~~v-QlR~K~~~~~~~-----~~~a~~l~~l~~~~~v~liIND~~d------lA~~~gAdGVHLgq~d   95 (540)
T 3nl6_A           28 YGQVEAGLQNGVTLV-QIREKDADTKFF-----IEEALQIKELCHAHNVPLIINDRID------VAMAIGADGIHVGQDD   95 (540)
T ss_dssp             HHHHHHHHHTTCSEE-EECCSSSCTTHH-----HHHHHHHHHHHHHTTCCEEECSCSH------HHHHTTCSEEEECTTS
T ss_pred             HHHHHHHHHCCCCEE-EEecCCCCHHHH-----HHHHHHHHHHHHhcCCEEEEeCcHH------HHHHcCCCEEEEChhh
Confidence            378999999999999 553111111111     1113345566677799999998754      57789999999 4455


Q ss_pred             CChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhC---CCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHH
Q 037779          124 LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREG---AAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVF  200 (310)
Q Consensus       124 ~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~G---ad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~  200 (310)
                      ++..+..+.+   +.+..+.+++||.+|+..+.+.|   +|||++. +.|.+                     .++... 
T Consensus        96 l~~~~ar~~l---g~~~iiG~S~ht~eea~~A~~~G~~~aDYv~~G-pvf~T---------------------~tK~~~-  149 (540)
T 3nl6_A           96 MPIPMIRKLV---GPDMVIGWSVGFPEEVDELSKMGPDMVDYIGVG-TLFPT---------------------LTKKNP-  149 (540)
T ss_dssp             SCHHHHHHHH---CTTSEEEEEECSHHHHHHHHHTCC--CCEEEES-CCSCC---------------------CCCC---
T ss_pred             cCHHHHHHHh---CCCCEEEEECCCHHHHHHHHHcCCCCCCEEEEc-CCCCC---------------------CCCCCc-
Confidence            5544444333   46789999999999999999999   9999984 43321                     111000 


Q ss_pred             hhhccCCCcHHHHHHHHhc------CCCCEEEEccCCCCCHHHHHHHHH--------cCCCEEEEccccccCCCHHHHHH
Q 037779          201 TFAKNIAAPYDLVMQTKQL------GRLPVVHFAAGGVATPADAAMMMQ--------LGCDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       201 ~~~~~~~~~~~l~~~i~~~------~~iPVv~ia~GGI~t~~di~~~~~--------~GadgV~VGsai~~~~dp~~~~~  266 (310)
                         ......++.++.+.+.      .++|+++  -||| +++++.++++        +|++||.|+|+|++++||.+.++
T Consensus       150 ---~~~~~G~~~l~~i~~~~~~~~~~~iPvvA--IGGI-~~~ni~~v~~~~~~~g~~~GadgvAVvsaI~~a~dp~~a~~  223 (540)
T 3nl6_A          150 ---KKAPMGTAGAIRVLDALERNNAHWCRTVG--IGGL-HPDNIERVLYQCVSSNGKRSLDGICVVSDIIASLDAAKSTK  223 (540)
T ss_dssp             -----CCCHHHHHHHHHHHHHHTTCTTCEEEE--ESSC-CTTTHHHHHHHCBCTTSSCBCSCEEESHHHHTCTTHHHHHH
T ss_pred             ---CCCCCCHHHHHHHHHHHHhhccCCCCEEE--EcCC-CHHHHHHHHHhhcccccccCceEEEEeHHHhcCCCHHHHHH
Confidence               0001124444444432      4789965  4999 6999999998        89999999999999999999999


Q ss_pred             HHHHHHHcC
Q 037779          267 AIVQAVTNY  275 (310)
Q Consensus       267 ~~~~~~~~~  275 (310)
                      +|++.++..
T Consensus       224 ~l~~~~~~~  232 (540)
T 3nl6_A          224 ILRGLIDKT  232 (540)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHHhC
Confidence            999999874

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=99.63  E-value=1.8e-14  Score=129.23  Aligned_cols=211  Identities=17%  Similarity=0.139  Sum_probs=142.6

Q ss_pred             ccceeeecCCcccc----CCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc
Q 037779           28 VGLAQMLRGGVIMD----VVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG  102 (310)
Q Consensus        28 ~~~~~~l~~g~i~~----~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~  102 (310)
                      .+.+++|.+|....    ..+| ++|+.|.+.|+++++.+   +.+. .+.|.  ..+.+.++++.+.+.+|+.+...+.
T Consensus        12 ~G~vVrlv~G~~~~~~~~~~dP~~~a~~~~~~gad~lhvv---Dld~-a~~~~--~~~~~~i~~i~~~~~~pl~vGGGIr   85 (243)
T 4gj1_A           12 DGEVVRLVKGDYEQKKVYKYNPLKKFKEYEKAGAKELHLV---DLTG-AKDPS--KRQFALIEKLAKEVSVNLQVGGGIR   85 (243)
T ss_dssp             TTEEEEEECSSSCEEEECCCCHHHHHHHHHHHTCCEEEEE---EHHH-HHCGG--GCCHHHHHHHHHHCCSEEEEESSCC
T ss_pred             CCeEEEEEccCcCCCcEeCCCHHHHHHHHHHCCCCEEEEE---ecCc-ccccc--hhHHHHHHHHHHhcCCCeEeccccc
Confidence            56777887776543    3566 89999999999998665   1122 22222  4568999999999999999999998


Q ss_pred             chHHHHHHHHcCCCeee-ecCCCChhHHHHHH-HhcCCC-CcEEeecCCHHHHHHHHHhCCCEEEEecCCC-C-CchHHH
Q 037779          103 HFVEAQILEAIGVDYVD-ESEVLTPADEENHI-NKHNFR-VPFVCGCRNLGESLRRIREGAAMIRTKGEAG-T-GNIVEA  177 (310)
Q Consensus       103 ~~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~-~~~~~~-l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~-~-~~~~~~  177 (310)
                      +.+.++.+.++||+.|. .+.....+++++.+ +..+.. +.+.+++...         +--++.++|+.. + ....+.
T Consensus        86 s~e~~~~~l~~GadkVii~t~a~~~p~li~e~~~~~g~q~iv~~iD~~~~---------~~~~v~~~gw~~~~~~~~~~~  156 (243)
T 4gj1_A           86 SKEEVKALLDCGVKRVVIGSMAIKDATLCLEILKEFGSEAIVLALDTILK---------EDYVVAVNAWQEASDKKLMEV  156 (243)
T ss_dssp             CHHHHHHHHHTTCSEEEECTTTTTCHHHHHHHHHHHCTTTEEEEEEEEES---------SSEEEC--------CCBHHHH
T ss_pred             cHHHHHHHHHcCCCEEEEccccccCCchHHHHHhcccCceEEEEEEEEeC---------CCCEEEecCceecccchHHHH
Confidence            88899999999999988 55555555555444 434333 3333443110         101344555432 2 234456


Q ss_pred             HHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc
Q 037779          178 VRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF  256 (310)
Q Consensus       178 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~  256 (310)
                      ++...+.+.....++.+++|++.     .+.+.++++.+.+. .++||  |++||+++.+|+.++ +.+++|+++||+|+
T Consensus       157 ~~~~~~~g~~eil~t~Id~DGt~-----~G~d~~l~~~l~~~~~~ipv--iasGGv~~~~Dl~~l-~~~~~gvivg~Al~  228 (243)
T 4gj1_A          157 LDFYSNKGLKHILCTDISKDGTM-----QGVNVRLYKLIHEIFPNICI--QASGGVASLKDLENL-KGICSGVIVGKALL  228 (243)
T ss_dssp             HHHHHTTTCCEEEEEETTC----------CCCHHHHHHHHHHCTTSEE--EEESCCCSHHHHHHT-TTTCSEEEECHHHH
T ss_pred             HHHHhhcCCcEEEeeeecccccc-----cCCCHHHHHHHHHhcCCCCE--EEEcCCCCHHHHHHH-HccCchhehHHHHH
Confidence            66666666667778888888873     56789999999875 46899  789999999999987 55799999999999


Q ss_pred             cCCCH
Q 037779          257 KSGDP  261 (310)
Q Consensus       257 ~~~dp  261 (310)
                      ...=.
T Consensus       229 ~g~i~  233 (243)
T 4gj1_A          229 DGVFS  233 (243)
T ss_dssp             TTSSC
T ss_pred             CCCCC
Confidence            87633

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=99.62  E-value=7.6e-15  Score=130.80  Aligned_cols=184  Identities=19%  Similarity=0.202  Sum_probs=125.5

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-CC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-EV  123 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~~  123 (310)
                      .+.++.+.++|+++++...     .. ..+.....+.+.++++++.+++|+++.+++.+.+.++.+.++|||.|+.. ..
T Consensus        36 ~~~a~~~~~~G~d~i~v~~-----~~-~~~~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~~  109 (253)
T 1h5y_A           36 VEMAVRYEEEGADEIAILD-----IT-AAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVNTAA  109 (253)
T ss_dssp             HHHHHHHHHTTCSCEEEEE-----CC-CCTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEESHHH
T ss_pred             HHHHHHHHHcCCCEEEEEe-----CC-ccccCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChHH
Confidence            4789999999999985441     11 00000112367889999999999999999887778888889999999843 22


Q ss_pred             C-ChhHHHHHHHhcCCC-CcEEeecC-------------------C-HHHHHHHHHhCCCEEEEecCCCCCchHHHHHHH
Q 037779          124 L-TPADEENHINKHNFR-VPFVCGCR-------------------N-LGESLRRIREGAAMIRTKGEAGTGNIVEAVRHV  181 (310)
Q Consensus       124 ~-~~~~~~~~~~~~~~~-l~v~~~v~-------------------t-~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~  181 (310)
                      + .+..+.+..+..+.. +.+.++++                   + .+.++.+.+.|+|+|.+++...++.        
T Consensus       110 ~~~~~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~~~~~~~~~~~~e~~~~~~~~G~d~i~~~~~~~~g~--------  181 (253)
T 1h5y_A          110 VRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGT--------  181 (253)
T ss_dssp             HHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTT--------
T ss_pred             hhCcHHHHHHHHHcCCCcEEEEEEeecCCCcEEEEEeCCeecCCCCHHHHHHHHHhCCCCEEEEecccCCCC--------
Confidence            2 233344444433321 22333332                   2 3456777889999998874322111        


Q ss_pred             HHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCH
Q 037779          182 RSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDP  261 (310)
Q Consensus       182 ~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp  261 (310)
                                             ..+.+++.++.+++..++|+  +++|||++++++.+++++||++|++||+|++.+++
T Consensus       182 -----------------------~~~~~~~~i~~l~~~~~~pv--ia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~~~~  236 (253)
T 1h5y_A          182 -----------------------GLGYDVELIRRVADSVRIPV--IASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLS  236 (253)
T ss_dssp             -----------------------CSCCCHHHHHHHHHHCSSCE--EEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSC
T ss_pred             -----------------------cCcCCHHHHHHHHHhcCCCE--EEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcCCCC
Confidence                                   01235677788877678899  67899998999999999999999999999998865


Q ss_pred             HHHHHH
Q 037779          262 VRRARA  267 (310)
Q Consensus       262 ~~~~~~  267 (310)
                      .+.+.+
T Consensus       237 ~~~~~~  242 (253)
T 1h5y_A          237 IAQVKR  242 (253)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444433

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=99.58  E-value=8e-14  Score=122.16  Aligned_cols=185  Identities=15%  Similarity=0.123  Sum_probs=128.5

Q ss_pred             ccceeeecCCccccCCC-HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHH
Q 037779           28 VGLAQMLRGGVIMDVVT-PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVE  106 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~~~-~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~  106 (310)
                      .++...+++-.   ..+ .+.++++.++|+++| ++       +.+.    ....+.++.+++ .++.+.....+ +.++
T Consensus        13 ~~ii~vi~~~~---~~~~~~~~~~l~~gGv~~i-el-------~~k~----~~~~~~i~~~~~-~~~~~gag~vl-~~d~   75 (207)
T 2yw3_A           13 SRLLPLLTVRG---GEDLLGLARVLEEEGVGAL-EI-------TLRT----EKGLEALKALRK-SGLLLGAGTVR-SPKE   75 (207)
T ss_dssp             HCEEEEECCCS---CCCHHHHHHHHHHTTCCEE-EE-------ECSS----THHHHHHHHHTT-SSCEEEEESCC-SHHH
T ss_pred             CCEEEEEeCCC---HHHHHHHHHHHHHcCCCEE-EE-------eCCC----hHHHHHHHHHhC-CCCEEEeCeEe-eHHH
Confidence            34555555521   122 578999999999998 45       2111    011456677777 56666555533 4588


Q ss_pred             HHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhc
Q 037779          107 AQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMG  186 (310)
Q Consensus       107 ~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~  186 (310)
                      ++.+.++|||+++.+.  ...++.+..+..  +++++.+++|+.|+.++.+.|+||++++....                
T Consensus        76 ~~~A~~~GAd~v~~~~--~d~~v~~~~~~~--g~~~i~G~~t~~e~~~A~~~Gad~v~~fpa~~----------------  135 (207)
T 2yw3_A           76 AEAALEAGAAFLVSPG--LLEEVAALAQAR--GVPYLPGVLTPTEVERALALGLSALKFFPAEP----------------  135 (207)
T ss_dssp             HHHHHHHTCSEEEESS--CCHHHHHHHHHH--TCCEEEEECSHHHHHHHHHTTCCEEEETTTTT----------------
T ss_pred             HHHHHHcCCCEEEcCC--CCHHHHHHHHHh--CCCEEecCCCHHHHHHHHHCCCCEEEEecCcc----------------
Confidence            9999999999998543  234555555553  46677789999999999999999999852100                


Q ss_pred             ceecccccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC---HH
Q 037779          187 DIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD---PV  262 (310)
Q Consensus       187 ~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d---p~  262 (310)
                                         . ...+.++.++... ++|+  ++.||| +++++.+++++|+++|.+||+|+. +|   +.
T Consensus       136 -------------------~-gG~~~lk~l~~~~~~ipv--vaiGGI-~~~n~~~~l~aGa~~vavgSai~~-~d~~~i~  191 (207)
T 2yw3_A          136 -------------------F-QGVRVLRAYAEVFPEVRF--LPTGGI-KEEHLPHYAALPNLLAVGGSWLLQ-GNLEAVR  191 (207)
T ss_dssp             -------------------T-THHHHHHHHHHHCTTCEE--EEBSSC-CGGGHHHHHTCSSBSCEEESGGGS-SCHHHHH
T ss_pred             -------------------c-cCHHHHHHHHhhCCCCcE--EEeCCC-CHHHHHHHHhCCCcEEEEehhhhC-CCHHHHH
Confidence                               0 0234556666543 7899  467999 499999999999999999999999 78   56


Q ss_pred             HHHHHHHHHHH
Q 037779          263 RRARAIVQAVT  273 (310)
Q Consensus       263 ~~~~~~~~~~~  273 (310)
                      +.+++|.+.++
T Consensus       192 ~~a~~~~~~~~  202 (207)
T 2yw3_A          192 AKVRAAKALLS  202 (207)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHHhc
Confidence            67777766653

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=99.58  E-value=8.8e-14  Score=121.46  Aligned_cols=180  Identities=19%  Similarity=0.212  Sum_probs=123.6

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHH---hhcCcceEeeccccchHHHHHHHHcCCCeeeec
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIK---SSVTIPVMAKARIGHFVEAQILEAIGVDYVDES  121 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~---~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~  121 (310)
                      .+.++.+.++|+++|+...+.. ..+..        .+.+++++   ...++|+++++.      ++.+.++|+|+|+..
T Consensus        29 ~~~~~~~~~~G~~~i~l~~~~~-~~~~~--------~~~~~~l~~~~~~~~v~v~v~~~------~~~a~~~gad~v~l~   93 (215)
T 1xi3_A           29 VESVREALEGGATAIQMRIKNA-PTREM--------YEIGKTLRQLTREYDALFFVDDR------VDVALAVDADGVQLG   93 (215)
T ss_dssp             HHHHHHHHHTTCSEEEECCCSC-CHHHH--------HHHHHHHHHHHHHTTCEEEEESC------HHHHHHHTCSEEEEC
T ss_pred             HHHHHHHHHCCCCEEEECCCCC-CHHHH--------HHHHHHHHHHHHHcCCeEEEcCh------HHHHHHcCCCEEEEC
Confidence            4789999999999984321100 01100        33344443   345678877633      457788999999854


Q ss_pred             -CCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHH
Q 037779          122 -EVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVF  200 (310)
Q Consensus       122 -~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~  200 (310)
                       ...++.. .+.+  . .++.+.++++|.+|+..+.+.|+|++.+.+...++.-                 +.       
T Consensus        94 ~~~~~~~~-~~~~--~-~~~~~~v~~~t~~e~~~~~~~g~d~i~~~~~~~~~~~-----------------~~-------  145 (215)
T 1xi3_A           94 PEDMPIEV-AKEI--A-PNLIIGASVYSLEEALEAEKKGADYLGAGSVFPTKTK-----------------ED-------  145 (215)
T ss_dssp             TTSCCHHH-HHHH--C-TTSEEEEEESSHHHHHHHHHHTCSEEEEECSSCC---------------------C-------
T ss_pred             CccCCHHH-HHHh--C-CCCEEEEecCCHHHHHHHHhcCCCEEEEcCCccCCCC-----------------CC-------
Confidence             2233332 2222  2 4677888899999999888999999998632111100                 00       


Q ss_pred             hhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          201 TFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       201 ~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                          .....++.++.+.+..++|+  +++|||+ ++++.+++++|+++|.+||+|++++||.+.+++|++.++.
T Consensus       146 ----~~~~~~~~l~~l~~~~~~pv--ia~GGI~-~~nv~~~~~~Ga~gv~vgs~i~~~~d~~~~~~~~~~~~~~  212 (215)
T 1xi3_A          146 ----ARVIGLEGLRKIVESVKIPV--VAIGGIN-KDNAREVLKTGVDGIAVISAVMGAEDVRKATEELRKIVEE  212 (215)
T ss_dssp             ----CCCCHHHHHHHHHHHCSSCE--EEESSCC-TTTHHHHHTTTCSEEEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred             ----CCCcCHHHHHHHHHhCCCCE--EEECCcC-HHHHHHHHHcCCCEEEEhHHHhCCCCHHHHHHHHHHHHhh
Confidence                01235677777776567899  5689996 9999999999999999999999999999999999988763

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=99.57  E-value=8.9e-15  Score=130.24  Aligned_cols=185  Identities=14%  Similarity=0.132  Sum_probs=125.8

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCC---CCCCChHHHHHHHhhcCcceEeeccccch-HHHHHHHHcCCCeeee
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGV---ARMSDPQLIKQIKSSVTIPVMAKARIGHF-VEAQILEAIGVDYVDE  120 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~---~~~~~~~~i~~i~~~~~lPv~~kd~i~~~-~~~~~~~~aGad~v~~  120 (310)
                      .+.++.+.++|+++++ +.     +  ..|.   ...-.++.++++|+.++.|+.+...+.+. ..++.+.++|||+++.
T Consensus        20 ~~~i~~~~~~Gad~ih-ld-----i--~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~dp~~~i~~~~~aGadgv~v   91 (230)
T 1tqj_A           20 GEEIKAVDEAGADWIH-VD-----V--MDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISV   91 (230)
T ss_dssp             HHHHHHHHHTTCSEEE-EE-----E--EBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHHcCCCEEE-EE-----E--EecCCCcchhhhHHHHHHHHhhcCCcEEEEEEccCHHHHHHHHHHcCCCEEEE
Confidence            4789999999999984 31     1  1111   01112688999999888888776666532 2467889999999974


Q ss_pred             cCC----CChhHHHHHHHhcCCCCcEEeec--CCHHHHHHHHHhCCCEEEEecC--CCCCchHHHHHHHHHhhcceeccc
Q 037779          121 SEV----LTPADEENHINKHNFRVPFVCGC--RNLGESLRRIREGAAMIRTKGE--AGTGNIVEAVRHVRSVMGDIRVLR  192 (310)
Q Consensus       121 ~~~----~~~~~~~~~~~~~~~~l~v~~~v--~t~~ea~~a~~~Gad~I~v~g~--~~~~~~~~~~~~~~~~~~~~~~l~  192 (310)
                      +..    ..+.+..+.++++  ++.+++.+  +|+.+..+....++|+|.+...  .+++.                   
T Consensus        92 h~e~~~~~~~~~~~~~i~~~--g~~~gv~~~p~t~~e~~~~~~~~~D~v~~msv~pg~ggq-------------------  150 (230)
T 1tqj_A           92 HVEHNASPHLHRTLCQIREL--GKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQ-------------------  150 (230)
T ss_dssp             ECSTTTCTTHHHHHHHHHHT--TCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCC----C-------------------
T ss_pred             CcccccchhHHHHHHHHHHc--CCcEEEEEeCCCcHHHHHHHHhcCCEEEEEEeccccCCc-------------------
Confidence            422    2455666666554  45555554  7887777777779999976422  11110                   


Q ss_pred             ccCchhHHhhhccCCCcHHHHHHHHhcC-----CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHH
Q 037779          193 NMDDDEVFTFAKNIAAPYDLVMQTKQLG-----RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARA  267 (310)
Q Consensus       193 ~~~~d~~~~~~~~~~~~~~l~~~i~~~~-----~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~  267 (310)
                      .+           .....+.++++++..     ++|+.  +.|||+ .+++.++.++|||++++||+|++++||.+.+++
T Consensus       151 ~~-----------~~~~~~~i~~lr~~~~~~~~~~~I~--v~GGI~-~~~~~~~~~aGad~vvvGSai~~a~d~~~~~~~  216 (230)
T 1tqj_A          151 SF-----------IPEVLPKIRALRQMCDERGLDPWIE--VDGGLK-PNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAG  216 (230)
T ss_dssp             CC-----------CGGGHHHHHHHHHHHHHHTCCCEEE--EESSCC-TTTTHHHHHHTCCEEEESHHHHTSSCHHHHHHH
T ss_pred             cC-----------cHHHHHHHHHHHHHHHhcCCCCcEE--EECCcC-HHHHHHHHHcCCCEEEECHHHHCCCCHHHHHHH
Confidence            00           011345555555543     68884  579996 699999999999999999999999999999999


Q ss_pred             HHHHH
Q 037779          268 IVQAV  272 (310)
Q Consensus       268 ~~~~~  272 (310)
                      |++.+
T Consensus       217 l~~~~  221 (230)
T 1tqj_A          217 VRNSK  221 (230)
T ss_dssp             HHTCC
T ss_pred             HHHHH
Confidence            87644

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=99.57  E-value=1.1e-13  Score=129.26  Aligned_cols=190  Identities=18%  Similarity=0.184  Sum_probs=138.2

Q ss_pred             CccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc---chHHHHHHHHc
Q 037779           37 GVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG---HFVEAQILEAI  113 (310)
Q Consensus        37 g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~---~~~~~~~~~~a  113 (310)
                      +.|....+++++.++.++|+-++......+.+  ..        .+.++++++.++.|+.++.++.   ..+.++.+.++
T Consensus        32 apM~gvs~~~la~av~~aGglG~i~~~~~~~~--~l--------~~~i~~i~~~~~~p~gVnl~~~~~~~~~~~~~~~~~  101 (326)
T 3bo9_A           32 GGMAWAGTPTLAAAVSEAGGLGIIGSGAMKPD--DL--------RKAISELRQKTDKPFGVNIILVSPWADDLVKVCIEE  101 (326)
T ss_dssp             CCCTTTSCHHHHHHHHHTTSBEEEECTTCCHH--HH--------HHHHHHHHTTCSSCEEEEEETTSTTHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHhCCCcEEeCCCCCCHH--HH--------HHHHHHHHHhcCCCEEEEEeccCCCHHHHHHHHHHC
Confidence            45556778999999999998776322111110  00        2456677777778998887662   13566788889


Q ss_pred             CCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccc
Q 037779          114 GVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRN  193 (310)
Q Consensus       114 Gad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~  193 (310)
                      |+|.|..+.. .|.++.+.++.  .+++++..+++.+++.++.+.|+|+|.+.|...+++.                   
T Consensus       102 g~d~V~l~~g-~p~~~~~~l~~--~g~~v~~~v~s~~~a~~a~~~GaD~i~v~g~~~GG~~-------------------  159 (326)
T 3bo9_A          102 KVPVVTFGAG-NPTKYIRELKE--NGTKVIPVVASDSLARMVERAGADAVIAEGMESGGHI-------------------  159 (326)
T ss_dssp             TCSEEEEESS-CCHHHHHHHHH--TTCEEEEEESSHHHHHHHHHTTCSCEEEECTTSSEEC-------------------
T ss_pred             CCCEEEECCC-CcHHHHHHHHH--cCCcEEEEcCCHHHHHHHHHcCCCEEEEECCCCCccC-------------------
Confidence            9999985444 35677777765  4688888999999999999999999999865443320                   


Q ss_pred             cCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779          194 MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV  272 (310)
Q Consensus       194 ~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~  272 (310)
                                 +...++++++.+.+..++||  |++|||++++++.+++++||++|++||+|+.+++. ...+.+++.+
T Consensus       160 -----------G~~~~~~ll~~i~~~~~iPv--iaaGGI~~~~dv~~al~~GA~gV~vGs~~~~~~e~-~~~~~~k~~~  224 (326)
T 3bo9_A          160 -----------GEVTTFVLVNKVSRSVNIPV--IAAGGIADGRGMAAAFALGAEAVQMGTRFVASVES-DVHPVYKEKI  224 (326)
T ss_dssp             -----------CSSCHHHHHHHHHHHCSSCE--EEESSCCSHHHHHHHHHHTCSEEEESHHHHTBSSC-CSCHHHHHHH
T ss_pred             -----------CCccHHHHHHHHHHHcCCCE--EEECCCCCHHHHHHHHHhCCCEEEechHHHcCccc-cccHHHHHHH
Confidence                       01235778888877678999  67899999999999999999999999999998763 2334455555

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=99.56  E-value=9.7e-14  Score=122.41  Aligned_cols=183  Identities=16%  Similarity=0.220  Sum_probs=122.4

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCC-----CChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARM-----SDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~-----~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      .+.++.+.++|+++|+ ++       .+.++...     .....+++++...++|+++++.      ++.+.++|+|+|+
T Consensus        34 ~~~~~~~~~~G~~~i~-l~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~v~v~v~~~------~~~a~~~gad~v~   99 (227)
T 2tps_A           34 VTVVQKALKGGATLYQ-FR-------EKGGDALTGEARIKFAEKAQAACREAGVPFIVNDD------VELALNLKADGIH   99 (227)
T ss_dssp             HHHHHHHHHHTCSEEE-EC-------CCSTTCCCHHHHHHHHHHHHHHHHHHTCCEEEESC------HHHHHHHTCSEEE
T ss_pred             HHHHHHHHHCCCCEEE-Ee-------cCCCCHhHHHHHHHHHHHHHHHHHHcCCeEEEcCH------HHHHHHcCCCEEE
Confidence            4679999999999984 42       11111100     0122333444455788888643      3467889999998


Q ss_pred             ecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhH
Q 037779          120 ESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEV  199 (310)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~  199 (310)
                      .... + ..+.+..+..+. +.+.++++|.+|+..+.+.|+|++.+. +.+.+.                     ...+ 
T Consensus       100 l~~~-~-~~~~~~~~~~g~-~~~~~s~~t~~e~~~a~~~g~d~v~~~-~v~~t~---------------------~~~~-  153 (227)
T 2tps_A          100 IGQE-D-ANAKEVRAAIGD-MILGVSAHTMSEVKQAEEDGADYVGLG-PIYPTE---------------------TKKD-  153 (227)
T ss_dssp             ECTT-S-SCHHHHHHHHTT-SEEEEEECSHHHHHHHHHHTCSEEEEC-CSSCCC---------------------SSSS-
T ss_pred             ECCC-c-cCHHHHHHhcCC-cEEEEecCCHHHHHHHHhCCCCEEEEC-CCcCCC---------------------CCCC-
Confidence            4322 1 122222222344 667777899999988999999999873 222110                     0000 


Q ss_pred             HhhhccCCCcHHHHHHHHhcCC-CCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          200 FTFAKNIAAPYDLVMQTKQLGR-LPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       200 ~~~~~~~~~~~~l~~~i~~~~~-iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                          ......++.++.+++..+ +|+  ++.|||+ ++++.+++++|+++|.+||+|++++||.+.+++|++.++.
T Consensus       154 ----~~~~~~~~~l~~~~~~~~~~pv--ia~GGI~-~~nv~~~~~~Ga~gv~vgs~i~~~~d~~~~~~~~~~~~~~  222 (227)
T 2tps_A          154 ----TRAVQGVSLIEAVRRQGISIPI--VGIGGIT-IDNAAPVIQAGADGVSMISAISQAEDPESAARKFREEIQT  222 (227)
T ss_dssp             ----CCCCCTTHHHHHHHHTTCCCCE--EEESSCC-TTTSHHHHHTTCSEEEESHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             ----CCCccCHHHHHHHHHhCCCCCE--EEEcCCC-HHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHh
Confidence                001224677777777666 899  5689996 9999999999999999999999999998999999988764

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=99.56  E-value=1.4e-13  Score=122.19  Aligned_cols=188  Identities=13%  Similarity=0.090  Sum_probs=126.7

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCC---CCCChHHHHHHHhhcCcceEeeccccc-hHHHHHHHHcCCCeeee
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVA---RMSDPQLIKQIKSSVTIPVMAKARIGH-FVEAQILEAIGVDYVDE  120 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~---~~~~~~~i~~i~~~~~lPv~~kd~i~~-~~~~~~~~~aGad~v~~  120 (310)
                      .+.++.+.++|+++++.-      +  ..|..   ..-.++.++++++.++.|+.+..++.+ .+.++.+.++|+|.|..
T Consensus        22 ~~~i~~~~~~Gad~i~l~------i--~Dg~fv~~~~~~~~~~~~lr~~~~~~~~v~lmv~d~~~~i~~~~~agad~v~v   93 (228)
T 1h1y_A           22 AAEADRMVRLGADWLHMD------I--MDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTF   93 (228)
T ss_dssp             HHHHHHHHHTTCSEEEEE------E--EBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSCGGGGHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHHcCCCEEEEE------E--ecCCcCcchhhCHHHHHHHHhhcCCcEEEEEEecCHHHHHHHHHHcCCCEEEE
Confidence            478999999999998422      1  11110   011278899999888777776666653 23467888899999953


Q ss_pred             c--CCCCh-hHHHHHHHhcCCCCcEEeec--CCHHHHHHHHHh---CCCEEEEecC--CCCCchHHHHHHHHHhhcceec
Q 037779          121 S--EVLTP-ADEENHINKHNFRVPFVCGC--RNLGESLRRIRE---GAAMIRTKGE--AGTGNIVEAVRHVRSVMGDIRV  190 (310)
Q Consensus       121 ~--~~~~~-~~~~~~~~~~~~~l~v~~~v--~t~~ea~~a~~~---Gad~I~v~g~--~~~~~~~~~~~~~~~~~~~~~~  190 (310)
                      +  ....+ ....+.+++.  ++.+++.+  +|..+..+....   ++|++.+...  .+++.                 
T Consensus        94 H~~~~~~~~~~~~~~i~~~--g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~-----------------  154 (228)
T 1h1y_A           94 HIEVSRDNWQELIQSIKAK--GMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQ-----------------  154 (228)
T ss_dssp             EGGGCTTTHHHHHHHHHHT--TCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSC-----------------
T ss_pred             CCCCcccHHHHHHHHHHHc--CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEeecCCCCcc-----------------
Confidence            3  22234 5556666654  45555554  666565555555   9999987422  12111                 


Q ss_pred             ccccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 037779          191 LRNMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV  269 (310)
Q Consensus       191 l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~  269 (310)
                        .+.           ....+.++++++.. ++|+  ++.|||+ ++++.++.++|+|++++||+|++++||.+.+++|+
T Consensus       155 --~~~-----------~~~l~~i~~~~~~~~~~pi--~v~GGI~-~~ni~~~~~aGaD~vvvGsai~~~~d~~~~~~~l~  218 (228)
T 1h1y_A          155 --KFM-----------PEMMEKVRALRKKYPSLDI--EVDGGLG-PSTIDVAASAGANCIVAGSSIFGAAEPGEVISALR  218 (228)
T ss_dssp             --CCC-----------GGGHHHHHHHHHHCTTSEE--EEESSCS-TTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHH
T ss_pred             --cCC-----------HHHHHHHHHHHHhcCCCCE--EEECCcC-HHHHHHHHHcCCCEEEECHHHHCCCCHHHHHHHHH
Confidence              000           11345556666654 7888  4579995 79999999999999999999999999999999999


Q ss_pred             HHHHcC
Q 037779          270 QAVTNY  275 (310)
Q Consensus       270 ~~~~~~  275 (310)
                      +.++..
T Consensus       219 ~~~~~~  224 (228)
T 1h1y_A          219 KSVEGS  224 (228)
T ss_dssp             HHHHHC
T ss_pred             HHHHHh
Confidence            887643

>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*

Probab=99.56  E-value=1.4e-13  Score=121.36  Aligned_cols=179  Identities=18%  Similarity=0.183  Sum_probs=119.7

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC--cceEeeccccchHHHHHHHHcCCCeeeecCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT--IPVMAKARIGHFVEAQILEAIGVDYVDESEV  123 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~--lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~  123 (310)
                      +.++.+.++|++++ +++....+...+        .+.++++++...  .++++++      .++.+.++|+|.|+.+..
T Consensus        33 ~~~~~~~~~G~~~v-~lr~~~~~~~~~--------~~~~~~l~~~~~~~~~l~v~~------~~~~a~~~gad~v~l~~~   97 (221)
T 1yad_A           33 ARIIITIQNEVDFI-HIRERSKSAADI--------LKLLDLIFEGGIDKRKLVMNG------RVDIALFSTIHRVQLPSG   97 (221)
T ss_dssp             HHHHHHHGGGCSEE-EECCTTSCHHHH--------HHHHHHHHHTTCCGGGEEEES------CHHHHHTTTCCEEEECTT
T ss_pred             HHHHHHHHCCCCEE-EEccCCCCHHHH--------HHHHHHHHHhcCcCCeEEEeC------hHHHHHHcCCCEEEeCCC
Confidence            44778888999998 442100001000        344555654321  1344442      446788899999985432


Q ss_pred             -CChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhh
Q 037779          124 -LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTF  202 (310)
Q Consensus       124 -~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~  202 (310)
                       .+...+ +.+  . .++.+.++++|.+++..+.+.|+|++.+.. .+.+.                     ...+    
T Consensus        98 ~~~~~~~-~~~--~-~~~~ig~sv~t~~~~~~a~~~gaD~i~~~~-~f~~~---------------------~~~g----  147 (221)
T 1yad_A           98 SFSPKQI-RAR--F-PHLHIGRSVHSLEEAVQAEKEDADYVLFGH-VFETD---------------------CKKG----  147 (221)
T ss_dssp             SCCHHHH-HHH--C-TTCEEEEEECSHHHHHHHHHTTCSEEEEEC-CC--------------------------------
T ss_pred             ccCHHHH-HHH--C-CCCEEEEEcCCHHHHHHHHhCCCCEEEECC-ccccC---------------------CCCC----
Confidence             333222 222  2 267888899999999999999999998853 22110                     0000    


Q ss_pred             hccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          203 AKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       203 ~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                        .....++.++.+.+..++||  ++.||| +++++.+++++|+++|.+||+|++++||.+.+++|++.++.
T Consensus       148 --~~~~~~~~l~~~~~~~~~pv--ia~GGI-~~~nv~~~~~~Ga~gv~vgs~i~~~~d~~~~~~~~~~~~~~  214 (221)
T 1yad_A          148 --LEGRGVSLLSDIKQRISIPV--IAIGGM-TPDRLRDVKQAGADGIAVMSGIFSSAEPLEAARRYSRKLKE  214 (221)
T ss_dssp             -----CHHHHHHHHHHHCCSCE--EEESSC-CGGGHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred             --CCCCCHHHHHHHHHhCCCCE--EEECCC-CHHHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHHHHHHHHH
Confidence              01224677777766567899  567999 79999999999999999999999999999999999988864

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=99.56  E-value=1.3e-13  Score=119.97  Aligned_cols=171  Identities=17%  Similarity=0.195  Sum_probs=125.5

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc--CcceEeeccccchHHHHHHHHcCCCeeeecCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV--TIPVMAKARIGHFVEAQILEAIGVDYVDESEV  123 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~--~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~  123 (310)
                      ++++.+.++|++++...      .+.. +     ..+.++.+|+.+  ++++.+. .+.+.++++.+.++|||++ ....
T Consensus        26 ~~~~~~~~~G~~~iev~------~~~~-~-----~~~~i~~ir~~~~~~~~ig~~-~v~~~~~~~~a~~~Gad~i-v~~~   91 (205)
T 1wa3_A           26 EKALAVFEGGVHLIEIT------FTVP-D-----ADTVIKELSFLKEKGAIIGAG-TVTSVEQCRKAVESGAEFI-VSPH   91 (205)
T ss_dssp             HHHHHHHHTTCCEEEEE------TTST-T-----HHHHHHHTHHHHHTTCEEEEE-SCCSHHHHHHHHHHTCSEE-ECSS
T ss_pred             HHHHHHHHCCCCEEEEe------CCCh-h-----HHHHHHHHHHHCCCCcEEEec-ccCCHHHHHHHHHcCCCEE-EcCC
Confidence            67999999999998432      1110 0     145678888775  3444332 2234567888888999999 4443


Q ss_pred             CChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779          124 LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA  203 (310)
Q Consensus       124 ~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  203 (310)
                      . +.++.+.+++  .+++++.+++|..|+.++.+.|+|+++++..    .                              
T Consensus        92 ~-~~~~~~~~~~--~g~~vi~g~~t~~e~~~a~~~Gad~vk~~~~----~------------------------------  134 (205)
T 1wa3_A           92 L-DEEISQFCKE--KGVFYMPGVMTPTELVKAMKLGHTILKLFPG----E------------------------------  134 (205)
T ss_dssp             C-CHHHHHHHHH--HTCEEECEECSHHHHHHHHHTTCCEEEETTH----H------------------------------
T ss_pred             C-CHHHHHHHHH--cCCcEECCcCCHHHHHHHHHcCCCEEEEcCc----c------------------------------
Confidence            3 3566676665  4688899999999999999999999998621    0                              


Q ss_pred             ccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC---HHHHHHHHHHHHHc
Q 037779          204 KNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD---PVRRARAIVQAVTN  274 (310)
Q Consensus       204 ~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d---p~~~~~~~~~~~~~  274 (310)
                         ....+.++.+.+.. ++|+  ++.|||+ ++++.+++++|+++|.+||+|++ +|   |.+.+++|.+.++.
T Consensus       135 ---~~g~~~~~~l~~~~~~~pv--ia~GGI~-~~~~~~~~~~Ga~~v~vGs~i~~-~d~~~~~~~~~~~~~~~~~  202 (205)
T 1wa3_A          135 ---VVGPQFVKAMKGPFPNVKF--VPTGGVN-LDNVCEWFKAGVLAVGVGSALVK-GTPDEVREKAKAFVEKIRG  202 (205)
T ss_dssp             ---HHHHHHHHHHHTTCTTCEE--EEBSSCC-TTTHHHHHHHTCSCEEECHHHHC-SCHHHHHHHHHHHHHHHHH
T ss_pred             ---ccCHHHHHHHHHhCCCCcE--EEcCCCC-HHHHHHHHHCCCCEEEECccccC-CCHHHHHHHHHHHHHHHHh
Confidence               00134455565544 6888  6789995 89999999999999999999999 89   99999999988764

>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.55  E-value=2.2e-14  Score=125.90  Aligned_cols=176  Identities=10%  Similarity=0.117  Sum_probs=119.5

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeee-cCC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE-SEV  123 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~-~~~  123 (310)
                      .+.++.+.++|+++| +++....+....        .+.++++++..+.++++++..      +.+.++|+|+|+. ...
T Consensus        16 ~~~~~~a~~~Gv~~v-~lr~k~~~~~~~--------~~~i~~l~~~~~~~livnd~~------~~A~~~gadgvhl~~~~   80 (210)
T 3ceu_A           16 DKIITALFEEGLDIL-HLRKPETPAMYS--------ERLLTLIPEKYHRRIVTHEHF------YLKEEFNLMGIHLNARN   80 (210)
T ss_dssp             HHHHHHHHHTTCCEE-EECCSSCCHHHH--------HHHHHHSCGGGGGGEEESSCT------THHHHTTCSEEECCSSS
T ss_pred             HHHHHHHHHCCCCEE-EEccCCCCHHHH--------HHHHHHHHHHhCCeEEEeCCH------HHHHHcCCCEEEECccc
Confidence            477899999999998 452100001111        334566666678888887554      4678899999983 222


Q ss_pred             CChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779          124 LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA  203 (310)
Q Consensus       124 ~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  203 (310)
                      .+...        ..+..++++++|.+|+..+. .|+||+.+. +.+...                     ++.+     
T Consensus        81 ~~~~~--------~~~~~ig~s~~t~~e~~~A~-~GaDyv~~g-~vf~t~---------------------sk~~-----  124 (210)
T 3ceu_A           81 PSEPH--------DYAGHVSCSCHSVEEVKNRK-HFYDYVFMS-PIYDSI---------------------SKVN-----  124 (210)
T ss_dssp             CSCCT--------TCCSEEEEEECSHHHHHTTG-GGSSEEEEC-CCC---------------------------------
T ss_pred             ccccc--------ccCCEEEEecCCHHHHHHHh-hCCCEEEEC-CcCCCC---------------------CCCC-----
Confidence            22111        12578999999999999888 999999984 333110                     0000     


Q ss_pred             ccCCCcHHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcC
Q 037779          204 KNIAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY  275 (310)
Q Consensus       204 ~~~~~~~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~  275 (310)
                      ......++.++.+.+.  .++||+  +.|||+ ++++.+++++|++||.|+|+|++++||.+. ++|++.++.+
T Consensus       125 ~~~~~g~~~l~~~~~~~~~~iPvi--aiGGI~-~~nv~~~~~~Ga~gVav~s~i~~~~d~~~~-~~~~~~v~~~  194 (210)
T 3ceu_A          125 YYSTYTAEELREAQKAKIIDSKVM--ALGGIN-EDNLLEIKDFGFGGAVVLGDLWNKFDACLD-QNYLAVIEHF  194 (210)
T ss_dssp             --CCCCHHHHHHHHHTTCSSTTEE--EESSCC-TTTHHHHHHTTCSEEEESHHHHTTCCTTTS-SCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHhcCCCCCEE--EECCCC-HHHHHHHHHhCCCEEEEhHHhHcCCCHHHH-HHHHHHHHHH
Confidence            0012246777777765  579994  569995 999999999999999999999999999765 6666666544

>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}

Probab=99.55  E-value=4.1e-14  Score=128.21  Aligned_cols=212  Identities=13%  Similarity=0.118  Sum_probs=134.8

Q ss_pred             ccceeeecCCcccc------------CCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcc
Q 037779           28 VGLAQMLRGGVIMD------------VVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIP   94 (310)
Q Consensus        28 ~~~~~~l~~g~i~~------------~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lP   94 (310)
                      .+.++++.+|....            ..+| ++|+.|.+.|+++++.+     |...       .+.+.++++++.+.+|
T Consensus        11 ~G~~V~~~~G~~~~~~~~~~~~~~~~~~dp~~~A~~~~~~Ga~~l~vv-----DL~~-------~n~~~i~~i~~~~~~p   78 (260)
T 2agk_A           11 NGEVKQIVGGTLTSKKEDVPKTNFVSQHPSSYYAKLYKDRDVQGCHVI-----KLGP-------NNDDAAREALQESPQF   78 (260)
T ss_dssp             TTEECC--------------------CCCHHHHHHHHHHTTCTTCEEE-----EESS-------SCHHHHHHHHHHSTTT
T ss_pred             CCEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCCEEEEE-----eCCC-------CCHHHHHHHHhcCCce
Confidence            45666776665432            2355 89999999999998554     2221       3488999999999999


Q ss_pred             eEeeccccchHHHHHHHHcCCCeee-ecCCC-C-----hhHHHHHHHhcC-CCCcEEeecCCHHHHHHHHHhCCCEEEEe
Q 037779           95 VMAKARIGHFVEAQILEAIGVDYVD-ESEVL-T-----PADEENHINKHN-FRVPFVCGCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus        95 v~~kd~i~~~~~~~~~~~aGad~v~-~~~~~-~-----~~~~~~~~~~~~-~~l~v~~~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                      +++...+... .++.+. +||+.|. .+..+ +     |+.+.+.+++.+ -.+.+.++++..       +.+.-.+.++
T Consensus        79 v~vgGGir~~-~~~~~l-~Ga~~Viigs~a~~~~g~~~p~~~~~~~~~~g~~~ivv~iD~k~~-------~~~g~~V~~~  149 (260)
T 2agk_A           79 LQVGGGINDT-NCLEWL-KWASKVIVTSWLFTKEGHFQLKRLERLTELCGKDRIVVDLSCRKT-------QDGRWIVAMN  149 (260)
T ss_dssp             SEEESSCCTT-THHHHT-TTCSCEEECGGGBCTTCCBCHHHHHHHHHHHCGGGEEEEEEEEEE-------ETTEEEEEET
T ss_pred             EEEeCCCCHH-HHHHHh-cCCCEEEECcHHHhhcCCCCHHHHHHHHHHhCcCcEEEEEEeeec-------CCCceEEEEc
Confidence            9997777654 777777 9999987 44433 3     444444444433 224555555421       0001144555


Q ss_pred             cCCC-CC-chH-HHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC----CCCEEEEccCCCCCHHHHH
Q 037779          167 GEAG-TG-NIV-EAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG----RLPVVHFAAGGVATPADAA  239 (310)
Q Consensus       167 g~~~-~~-~~~-~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~----~iPVv~ia~GGI~t~~di~  239 (310)
                      |+.. ++ +.. +.++.+.+. .+...+..+++|+..     .+.++++++.+.+..    ++||  |++|||+|++|+.
T Consensus       150 gw~~~t~~~~~~e~a~~~~~~-a~~il~t~i~~dG~~-----~G~d~eli~~l~~~~~~~~~iPV--IasGGi~s~ed~~  221 (260)
T 2agk_A          150 KWQTLTDLELNADTFRELRKY-TNEFLIHAADVEGLC-----GGIDELLVSKLFEWTKDYDDLKI--VYAGGAKSVDDLK  221 (260)
T ss_dssp             TTTEEEEEEESHHHHHHHTTT-CSEEEEEC------------CCCCHHHHHHHHHHHTTCSSCEE--EEESCCCCTHHHH
T ss_pred             CCccccCccHHHHHHHHHHHh-cCEEEEEeeccccCc-----CCCCHHHHHHHHHhhcccCCceE--EEeCCCCCHHHHH
Confidence            5532 11 334 666666667 665556666666542     356899999999887    8999  7899999999999


Q ss_pred             HHHHc--CCCEEEEcccc--ccCC-CHHHHHHHH
Q 037779          240 MMMQL--GCDGVFVGSGV--FKSG-DPVRRARAI  268 (310)
Q Consensus       240 ~~~~~--GadgV~VGsai--~~~~-dp~~~~~~~  268 (310)
                      ++++.  |+++|++||++  +..+ .....+.++
T Consensus       222 ~l~~~~~G~~gvivg~al~l~~g~~~~~~~~~~~  255 (260)
T 2agk_A          222 LVDELSHGKVDLTFGSSLDIFGGNLVKFEDCCRW  255 (260)
T ss_dssp             HHHHHHTTCEEEECCTTBGGGTCSSBCHHHHHHH
T ss_pred             HHHHhcCCCCEEEeeCCHHHcCCCCCCHHHHHHH
Confidence            99987  99999999997  8776 555555444

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=99.55  E-value=1.7e-13  Score=119.71  Aligned_cols=182  Identities=23%  Similarity=0.210  Sum_probs=126.0

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhh-cCcceEeeccccc-hH-HHHHHHHcCCCeeeecC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSS-VTIPVMAKARIGH-FV-EAQILEAIGVDYVDESE  122 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~-~~lPv~~kd~i~~-~~-~~~~~~~aGad~v~~~~  122 (310)
                      +.++.+. .|++.+.+..  |.- -.++       ++.++++|+. .++|+.++-.+.+ .+ .++.+.++|||+++.+.
T Consensus        17 ~~~~~~~-~~~diie~G~--p~~-~~~g-------~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~   85 (211)
T 3f4w_A           17 VFMDKVV-DDVDIIEVGT--PFL-IREG-------VNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLG   85 (211)
T ss_dssp             HHHHHHG-GGCSEEEECH--HHH-HHHT-------THHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEET
T ss_pred             HHHHHhh-cCccEEEeCc--HHH-Hhcc-------HHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeC
Confidence            4566664 5888875431  110 1222       6889999988 5899977544432 12 37888999999998654


Q ss_pred             CCC---hhHHHHHHHhcCCCCcEEee---cCCH-HHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccC
Q 037779          123 VLT---PADEENHINKHNFRVPFVCG---CRNL-GESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMD  195 (310)
Q Consensus       123 ~~~---~~~~~~~~~~~~~~l~v~~~---v~t~-~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~  195 (310)
                      ...   +.++.+.++++  ++.++++   +.|+ ++++.+.+.|+|+|.++ +.+++.                   .. 
T Consensus        86 ~~~~~~~~~~~~~~~~~--g~~~~v~~~~~~t~~~~~~~~~~~g~d~i~v~-~g~~g~-------------------~~-  142 (211)
T 3f4w_A           86 VTDVLTIQSCIRAAKEA--GKQVVVDMICVDDLPARVRLLEEAGADMLAVH-TGTDQQ-------------------AA-  142 (211)
T ss_dssp             TSCHHHHHHHHHHHHHH--TCEEEEECTTCSSHHHHHHHHHHHTCCEEEEE-CCHHHH-------------------HT-
T ss_pred             CCChhHHHHHHHHHHHc--CCeEEEEecCCCCHHHHHHHHHHcCCCEEEEc-CCCccc-------------------cc-
Confidence            322   24555555554  4555544   3454 45788889999999886 222211                   00 


Q ss_pred             chhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          196 DDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       196 ~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                                .....+.++.+++. .++|+  +++|||+ ++++.+++++|||+|++||+|++++||.+.+++|++.+++
T Consensus       143 ----------~~~~~~~i~~l~~~~~~~~i--~~~gGI~-~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~~~~~~  209 (211)
T 3f4w_A          143 ----------GRKPIDDLITMLKVRRKARI--AVAGGIS-SQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVLLQ  209 (211)
T ss_dssp             ----------TCCSHHHHHHHHHHCSSCEE--EEESSCC-TTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             ----------CCCCHHHHHHHHHHcCCCcE--EEECCCC-HHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHHHHhh
Confidence                      01245667777775 37888  5689995 9999999999999999999999999999999999998875

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=99.54  E-value=1.1e-13  Score=121.64  Aligned_cols=186  Identities=12%  Similarity=0.073  Sum_probs=124.9

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCC---CCCChHHHHHHHhhcCcceEeeccccch-HHHHHHHHcCCCeeee
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVA---RMSDPQLIKQIKSSVTIPVMAKARIGHF-VEAQILEAIGVDYVDE  120 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~---~~~~~~~i~~i~~~~~lPv~~kd~i~~~-~~~~~~~~aGad~v~~  120 (310)
                      .+.++.+.++|+++++..        .+.|+.   ....++.++++++.++.|+.+..++.+. +.++.+.++|+|+|+.
T Consensus        19 ~~~~~~~~~~G~~~i~~~--------~~dg~~~~~~~~g~~~i~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~gad~v~v   90 (220)
T 2fli_A           19 ASELARIEETDAEYVHID--------IMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTI   90 (220)
T ss_dssp             HHHHHHHHHTTCCEEEEE--------EEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHHcCCCEEEEE--------eecCCCCCccccCHHHHHHHHHhCCCCEEEEEeecCHHHHHHHHHHcCCCEEEE
Confidence            478999999999997421        122221   1122789999998888888887776542 3568889999999963


Q ss_pred             c--CCCChhHHHHHHHhcCCCCcEEeec--CCHHHHHHHHHhCCCEEEEe--cCCCCCchHHHHHHHHHhhcceeccccc
Q 037779          121 S--EVLTPADEENHINKHNFRVPFVCGC--RNLGESLRRIREGAAMIRTK--GEAGTGNIVEAVRHVRSVMGDIRVLRNM  194 (310)
Q Consensus       121 ~--~~~~~~~~~~~~~~~~~~l~v~~~v--~t~~ea~~a~~~Gad~I~v~--g~~~~~~~~~~~~~~~~~~~~~~~l~~~  194 (310)
                      +  ....+....+.+++.  +..+++.+  +|..|..+....++|++.+.  ++.+++.                   ..
T Consensus        91 h~~~~~~~~~~~~~~~~~--g~~i~~~~~~~t~~e~~~~~~~~~d~vl~~~~~~g~~g~-------------------~~  149 (220)
T 2fli_A           91 HTESTRHIHGALQKIKAA--GMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQ-------------------AF  149 (220)
T ss_dssp             EGGGCSCHHHHHHHHHHT--TSEEEEEECTTSCGGGGGGGTTTCSEEEEESSCTTCSSC-------------------CC
T ss_pred             ccCccccHHHHHHHHHHc--CCcEEEEEcCCCCHHHHHHHHhhCCEEEEEEECCCCccc-------------------cc
Confidence            3  223455666666654  44455554  66666655666678988542  2333331                   00


Q ss_pred             CchhHHhhhccCCCcHHHHHHHHhcC-----CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 037779          195 DDDEVFTFAKNIAAPYDLVMQTKQLG-----RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV  269 (310)
Q Consensus       195 ~~d~~~~~~~~~~~~~~l~~~i~~~~-----~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~  269 (310)
                      .           ....+.++.+++..     ++|+  ++.|||+ ++++.++.++|+|+++|||+|++++||.+.+++|+
T Consensus       150 ~-----------~~~~~~i~~~~~~~~~~~~~~~i--~v~GGI~-~~~~~~~~~~Gad~vvvGsai~~~~d~~~a~~~~~  215 (220)
T 2fli_A          150 I-----------PECLEKVATVAKWRDEKGLSFDI--EVDGGVD-NKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLR  215 (220)
T ss_dssp             C-----------GGGHHHHHHHHHHHHHTTCCCEE--EEESSCC-TTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHH
T ss_pred             C-----------HHHHHHHHHHHHHHHhcCCCceE--EEECcCC-HHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHH
Confidence            1           01123333333321     5787  5689996 99999999999999999999999999999999998


Q ss_pred             HHHH
Q 037779          270 QAVT  273 (310)
Q Consensus       270 ~~~~  273 (310)
                      +.++
T Consensus       216 ~~~~  219 (220)
T 2fli_A          216 TALN  219 (220)
T ss_dssp             HHHC
T ss_pred             HHhc
Confidence            7653

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=99.52  E-value=5.1e-13  Score=125.03  Aligned_cols=192  Identities=20%  Similarity=0.222  Sum_probs=137.0

Q ss_pred             CccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc--c-hHHHHHHHHc
Q 037779           37 GVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG--H-FVEAQILEAI  113 (310)
Q Consensus        37 g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~--~-~~~~~~~~~a  113 (310)
                      +.|....+++++..+.++|+-++......+.+  ..        .+.++++++.++.|+.++.+..  . .+.++.+.++
T Consensus        18 apM~g~s~~~la~av~~aG~lG~i~~~~~~~~--~~--------~~~i~~i~~~~~~p~gvnl~~~~~~~~~~~~~a~~~   87 (332)
T 2z6i_A           18 GGMAWVADGDLAGAVSKAGGLGIIGGGNAPKE--VV--------KANIDKIKSLTDKPFGVNIMLLSPFVEDIVDLVIEE   87 (332)
T ss_dssp             CCCTTTCCHHHHHHHHHHTSBEEEECTTCCHH--HH--------HHHHHHHHHHCCSCEEEEECTTSTTHHHHHHHHHHT
T ss_pred             CCCCCCCcHHHHHHHHhCCCcEEeCCCCCCHH--HH--------HHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHHC
Confidence            34445667999999999998665332111110  00        3346667777788998887762  2 2456788889


Q ss_pred             CCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccc
Q 037779          114 GVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRN  193 (310)
Q Consensus       114 Gad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~  193 (310)
                      |+|.|..+.. .|.++.+.+++.  ++++++.+.+.++++.+.+.|+|++.+.|...+++.                   
T Consensus        88 g~d~V~~~~g-~p~~~i~~l~~~--g~~v~~~v~~~~~a~~~~~~GaD~i~v~g~~~GG~~-------------------  145 (332)
T 2z6i_A           88 GVKVVTTGAG-NPSKYMERFHEA--GIIVIPVVPSVALAKRMEKIGADAVIAEGMEAGGHI-------------------  145 (332)
T ss_dssp             TCSEEEECSS-CGGGTHHHHHHT--TCEEEEEESSHHHHHHHHHTTCSCEEEECTTSSEEC-------------------
T ss_pred             CCCEEEECCC-ChHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHcCCCEEEEECCCCCCCC-------------------
Confidence            9999986544 466777777763  688888999999999999999999999765322210                   


Q ss_pred             cCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779          194 MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       194 ~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                                 +...++++++.+++..++||  |++|||++++++.+++++|||+|.+||+|+.+++. ...+.+++.+.
T Consensus       146 -----------g~~~~~~ll~~i~~~~~iPV--iaaGGI~~~~~~~~al~~GAdgV~vGs~~l~~~e~-~~~~~~k~~~~  211 (332)
T 2z6i_A          146 -----------GKLTTMTLVRQVATAISIPV--IAAGGIADGEGAAAGFMLGAEAVQVGTRFVVAKES-NAHPNYKEKIL  211 (332)
T ss_dssp             -----------CSSCHHHHHHHHHHHCSSCE--EEESSCCSHHHHHHHHHTTCSEEEECHHHHTBTTC-CSCHHHHHHHH
T ss_pred             -----------CCccHHHHHHHHHHhcCCCE--EEECCCCCHHHHHHHHHcCCCEEEecHHHhcCccc-cccHHHHHHHH
Confidence                       11235778888887778999  67899999999999999999999999999997643 12344445544


Q ss_pred             c
Q 037779          274 N  274 (310)
Q Consensus       274 ~  274 (310)
                      .
T Consensus       212 ~  212 (332)
T 2z6i_A          212 K  212 (332)
T ss_dssp             H
T ss_pred             h
Confidence            3

>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}

Probab=99.52  E-value=3.6e-14  Score=125.44  Aligned_cols=163  Identities=21%  Similarity=0.274  Sum_probs=113.2

Q ss_pred             hHHHHHHHhhcCcceEeeccccc-------hHHHHHHHHcCCCeeeecC---CCChhHHHHHHHh-cCCCCcEEeecCCH
Q 037779           81 PQLIKQIKSSVTIPVMAKARIGH-------FVEAQILEAIGVDYVDESE---VLTPADEENHINK-HNFRVPFVCGCRNL  149 (310)
Q Consensus        81 ~~~i~~i~~~~~lPv~~kd~i~~-------~~~~~~~~~aGad~v~~~~---~~~~~~~~~~~~~-~~~~l~v~~~v~t~  149 (310)
                      +..++.+++.+++|++++|.--.       ...++.+.++|||+|+..+   .++..++.+.+.. +..|+.+++++++.
T Consensus        42 ~~~l~~v~~~~~~~v~aqd~~~~~~ga~tGei~~~~~~~~Gad~Vll~~ser~l~~~e~~~~~~~a~~~Gl~~iv~v~~~  121 (219)
T 2h6r_A           42 FVDLRMIVENVNIPVYAQHIDNINPGSHTGHILAEAIKDCGCKGTLINHSEKRMLLADIEAVINKCKNLGLETIVCTNNI  121 (219)
T ss_dssp             TTTHHHHHHHCCSCBEESCCCSCCSBSCTTCCCHHHHHHHTCCEEEESBTTBCCBHHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             HHHHHHHHHHcCCcEEEEECChhhcCCccCchHHHHHHHcCCCEEEECCccccCCHHHHHHHHHHHHHCCCeEEEEeCCc
Confidence            67788888888999999873210       0127789999999998433   3455555555444 34589999999999


Q ss_pred             HHHHHHHHhCCCEEEEecCC--CCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEE
Q 037779          150 GESLRRIREGAAMIRTKGEA--GTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVH  226 (310)
Q Consensus       150 ~ea~~a~~~Gad~I~v~g~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~  226 (310)
                      .+.+++.+.++++++++...  +||.                .+.+.++|          ...+..+.+++.. ++|+  
T Consensus       122 ~e~~~~~~~~~~~i~~~~~~~iGtG~----------------~~~t~~~~----------~~~~~~~~ir~~~~~~~i--  173 (219)
T 2h6r_A          122 NTSKAVAALSPDCIAVEPPELIGTGI----------------PVSKANPE----------VVEGTVRAVKEINKDVKV--  173 (219)
T ss_dssp             HHHHHHTTTCCSEEEECCCC----------------------------------------CSHHHHHHHHHHCTTCEE--
T ss_pred             hHHHHHHhCCCCEEEEEeccccccCC----------------CCccCCHH----------HHHHHHHHHHhccCCCeE--
Confidence            89888888899999987432  2220                00011111          0123333344432 5788  


Q ss_pred             EccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 037779          227 FAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQA  271 (310)
Q Consensus       227 ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~  271 (310)
                      +++|||++++++..+.+.|+|||+|||++++++||.+.+++|++.
T Consensus       174 i~ggGI~~~~~~~~~~~~gaDgvlVGsAi~~~~d~~~~~~~l~~~  218 (219)
T 2h6r_A          174 LCGAGISKGEDVKAALDLGAEGVLLASGVVKAKNVEEAIRELIKF  218 (219)
T ss_dssp             EECSSCCSHHHHHHHHTTTCCCEEESHHHHTCSSHHHHHHHHCC-
T ss_pred             EEEeCcCcHHHHHHHhhCCCCEEEEcHHHhCcccHHHHHHHHHHh
Confidence            679999999999999999999999999999999999998887653

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=99.51  E-value=9.2e-13  Score=122.98  Aligned_cols=195  Identities=18%  Similarity=0.233  Sum_probs=137.2

Q ss_pred             CccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc------c-hHHHHH
Q 037779           37 GVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG------H-FVEAQI  109 (310)
Q Consensus        37 g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~------~-~~~~~~  109 (310)
                      +.|....+++++.++.++|+-++......+ ..+..        .+.++++++.++.|+.++.++.      . .+.++.
T Consensus        21 apM~gvs~~~la~av~~aGglG~i~~~~~~-s~~~l--------~~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~~~~~~   91 (328)
T 2gjl_A           21 GGMQWVGRAEMAAAVANAGGLATLSALTQP-SPEAL--------AAEIARCRELTDRPFGVNLTLLPTQKPVPYAEYRAA   91 (328)
T ss_dssp             CCCTTTCSHHHHHHHHHTTSBCEEETTTSS-SHHHH--------HHHHHHHHHHCSSCCEEEEEECCCSSCCCHHHHHHH
T ss_pred             CCCCCCCcHHHHHHHHHCCCeEEeCCCCCC-CHHHH--------HHHHHHHHHhcCCCeEEEEeccccccCccHHHHHHH
Confidence            444556789999999999986653221000 01110        2446677777778887776654      1 256788


Q ss_pred             HHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhccee
Q 037779          110 LEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIR  189 (310)
Q Consensus       110 ~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~  189 (310)
                      +.++|+|.|..+.. .|.++.+.+++.  +++++..+++.+++.++.+.|+|++.+.|...+++.               
T Consensus        92 ~~~~g~d~V~~~~g-~p~~~~~~l~~~--gi~vi~~v~t~~~a~~~~~~GaD~i~v~g~~~GG~~---------------  153 (328)
T 2gjl_A           92 IIEAGIRVVETAGN-DPGEHIAEFRRH--GVKVIHKCTAVRHALKAERLGVDAVSIDGFECAGHP---------------  153 (328)
T ss_dssp             HHHTTCCEEEEEES-CCHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTTCSEEEEECTTCSBCC---------------
T ss_pred             HHhcCCCEEEEcCC-CcHHHHHHHHHc--CCCEEeeCCCHHHHHHHHHcCCCEEEEECCCCCcCC---------------
Confidence            88899999985433 246777777664  688888899999999999999999998765433320               


Q ss_pred             cccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 037779          190 VLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV  269 (310)
Q Consensus       190 ~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~  269 (310)
                        ..           ....++++++.+++..++||  +++|||++++++.+++++|||+|++||+|+.+++. ...+.++
T Consensus       154 --G~-----------~~~~~~~~l~~v~~~~~iPv--iaaGGI~~~~~v~~al~~GAdgV~vGs~~~~~~e~-~~~~~~k  217 (328)
T 2gjl_A          154 --GE-----------DDIPGLVLLPAAANRLRVPI--IASGGFADGRGLVAALALGADAINMGTRFLATREC-PIHPAVK  217 (328)
T ss_dssp             --CS-----------SCCCHHHHHHHHHTTCCSCE--EEESSCCSHHHHHHHHHHTCSEEEESHHHHTSSSS-CSCHHHH
T ss_pred             --CC-----------ccccHHHHHHHHHHhcCCCE--EEECCCCCHHHHHHHHHcCCCEEEECHHHHcCccc-cccHHHH
Confidence              00           00236788888887778999  67899999999999999999999999999998763 2334455


Q ss_pred             HHHHc
Q 037779          270 QAVTN  274 (310)
Q Consensus       270 ~~~~~  274 (310)
                      +.+.+
T Consensus       218 ~~~~~  222 (328)
T 2gjl_A          218 AAIRA  222 (328)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            55433

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=99.50  E-value=2.3e-13  Score=120.64  Aligned_cols=188  Identities=15%  Similarity=0.154  Sum_probs=122.7

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccch-HHHHHHHHcCCCeeeecCC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHF-VEAQILEAIGVDYVDESEV  123 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~-~~~~~~~~aGad~v~~~~~  123 (310)
                      .+.++.+.++|+++++.--   .|.......  ...++.++++++.++.|+.+..++.+. +.++.+.++|+|+++.+..
T Consensus        26 ~~~i~~~~~~G~d~i~l~~---~dg~f~~~~--~~~~~~i~~l~~~~~~~~~v~l~vnd~~~~v~~~~~~Gad~v~vh~~  100 (230)
T 1rpx_A           26 GEQVKAIEQAGCDWIHVDV---MDGRFVPNI--TIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCE  100 (230)
T ss_dssp             HHHHHHHHHTTCCCEEEEE---EBSSSSSCB--CCCHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEEEECS
T ss_pred             HHHHHHHHHCCCCEEEEee---ccCCccccc--ccCHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEEEec
Confidence            4778999999999984310   011000000  112788999998888888777666643 3677888899999974432


Q ss_pred             ----CChhHHHHHHHhcCCCCcEEeec--CCHHHHHHHHHhCCCEEEEec--CCCCCchHHHHHHHHHhhcceecccccC
Q 037779          124 ----LTPADEENHINKHNFRVPFVCGC--RNLGESLRRIREGAAMIRTKG--EAGTGNIVEAVRHVRSVMGDIRVLRNMD  195 (310)
Q Consensus       124 ----~~~~~~~~~~~~~~~~l~v~~~v--~t~~ea~~a~~~Gad~I~v~g--~~~~~~~~~~~~~~~~~~~~~~~l~~~~  195 (310)
                          ..+.++.+.++++  ++.+++.+  +|..+...+...++|++.+.+  +.+++.                   ++.
T Consensus       101 ~~~~~~~~~~~~~~~~~--g~~ig~~~~p~t~~e~~~~~~~~~d~vl~~~~~pg~~g~-------------------~~~  159 (230)
T 1rpx_A          101 QSSTIHLHRTINQIKSL--GAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQ-------------------SFI  159 (230)
T ss_dssp             TTTCSCHHHHHHHHHHT--TSEEEEEECTTCCGGGGTTTTTTCSEEEEESSCTTCSSC-------------------CCC
T ss_pred             CccchhHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHhhCCEEEEEEEcCCCCCc-------------------ccc
Confidence                2344566666554  45555554  566666556667899984432  233321                   000


Q ss_pred             chhHHhhhccCCCcHHHHHHHHhcC-----CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 037779          196 DDEVFTFAKNIAAPYDLVMQTKQLG-----RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ  270 (310)
Q Consensus       196 ~d~~~~~~~~~~~~~~l~~~i~~~~-----~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~  270 (310)
                                 ....+.++.+++..     ++|+  ++.|||+ ++++.+++++|||+|+|||+|++++||.+.+++|++
T Consensus       160 -----------~~~~~~i~~l~~~~~~~~~~~pi--~v~GGI~-~~n~~~~~~aGad~vvvgSaI~~a~dp~~a~~~l~~  225 (230)
T 1rpx_A          160 -----------ESQVKKISDLRKICAERGLNPWI--EVDGGVG-PKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKT  225 (230)
T ss_dssp             -----------TTHHHHHHHHHHHHHHHTCCCEE--EEESSCC-TTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHT
T ss_pred             -----------HHHHHHHHHHHHHHHhcCCCceE--EEECCCC-HHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHH
Confidence                       11233344444432     6788  4579995 999999999999999999999999999999998875


Q ss_pred             HH
Q 037779          271 AV  272 (310)
Q Consensus       271 ~~  272 (310)
                      .+
T Consensus       226 ~~  227 (230)
T 1rpx_A          226 SK  227 (230)
T ss_dssp             CC
T ss_pred             HH
Confidence            43

>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1

Probab=99.50  E-value=1.7e-12  Score=115.83  Aligned_cols=194  Identities=19%  Similarity=0.255  Sum_probs=126.7

Q ss_pred             HHHHHHHHcCCcEEE-ecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc-chH----HHHHHHH-c-CCCe
Q 037779           46 EQARIAEEAGACAVM-ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG-HFV----EAQILEA-I-GVDY  117 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~-~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~-~~~----~~~~~~~-a-Gad~  117 (310)
                      .+.+++...|+..+. -+++++......       ....+..+. ..++.++-+.-.. +.+    .++..-+ + |-+.
T Consensus        34 ~~~~a~~asg~e~vtva~rR~~~~~~~~-------~~~~~~~i~-~~~~~~lpNTag~~ta~eAv~~a~lare~~~~~~~  105 (265)
T 1wv2_A           34 ETRRAIEASGAEIVTVAVRRTNIGQNPD-------EPNLLDVIP-PDRYTILPNTAGCYDAVEAVRTCRLARELLDGHNL  105 (265)
T ss_dssp             HHHHHHHHSCCSEEEEEGGGCCC--------------------C-TTTSEEEEECTTCCSHHHHHHHHHHHHTTTTSCCE
T ss_pred             HHHHHHHHhCCCeEEEEEEeeccccCCC-------cchHHhhhh-hcCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCCe
Confidence            567778888998772 343433210000       122333343 3455666654333 222    2344444 3 5555


Q ss_pred             ee---ecC--C--CChhHHHHHHHh-cCCCCcEE-eecCCHHHHHHHHHhCCCEEEEecC-CCCCchHHHHHHHHHhhcc
Q 037779          118 VD---ESE--V--LTPADEENHINK-HNFRVPFV-CGCRNLGESLRRIREGAAMIRTKGE-AGTGNIVEAVRHVRSVMGD  187 (310)
Q Consensus       118 v~---~~~--~--~~~~~~~~~~~~-~~~~l~v~-~~v~t~~ea~~a~~~Gad~I~v~g~-~~~~~~~~~~~~~~~~~~~  187 (310)
                      |-   +++  .  ..+.+.++..+. ...|+.++ ..+.++..+++..+.|+++|..+|. .+++.              
T Consensus       106 iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf~Vlpy~~dd~~~akrl~~~G~~aVmPlg~pIGsG~--------------  171 (265)
T 1wv2_A          106 VKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSDDPIIARQLAEIGCIAVMPLAGLIGSGL--------------  171 (265)
T ss_dssp             EEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECSCHHHHHHHHHSCCSEEEECSSSTTCCC--------------
T ss_pred             EEEEeecCccccCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCCCEEEeCCccCCCCC--------------
Confidence            53   221  1  124455555554 33567777 4788999999999999999988654 44431              


Q ss_pred             eecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHH
Q 037779          188 IRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARA  267 (310)
Q Consensus       188 ~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~  267 (310)
                                       ++ .++++++.+.+..++||  |++|||+||+|+.+++++|||||+|||+|++++||..++++
T Consensus       172 -----------------Gi-~~~~lI~~I~e~~~vPV--I~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~a  231 (265)
T 1wv2_A          172 -----------------GI-CNPYNLRIILEEAKVPV--LVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEA  231 (265)
T ss_dssp             -----------------CC-SCHHHHHHHHHHCSSCB--EEESCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHH
T ss_pred             -----------------Cc-CCHHHHHHHHhcCCCCE--EEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHH
Confidence                             11 24778888888788999  67999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCChhhH
Q 037779          268 IVQAVTNYSDPDVL  281 (310)
Q Consensus       268 ~~~~~~~~~~~~~~  281 (310)
                      |.+++++.+.....
T Consensus       232 f~~Av~aGr~a~~a  245 (265)
T 1wv2_A          232 MKHAIVAGRLAYLA  245 (265)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999876654433

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=99.48  E-value=2.8e-13  Score=135.05  Aligned_cols=211  Identities=17%  Similarity=0.188  Sum_probs=130.4

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhc-CCC-CCCCChHHHHHHHhhcCcceEeeccccch-----------HHHHHHHH
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQ-GGV-ARMSDPQLIKQIKSSVTIPVMAKARIGHF-----------VEAQILEA  112 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~-~G~-~~~~~~~~i~~i~~~~~lPv~~kd~i~~~-----------~~~~~~~~  112 (310)
                      ++|+.|.++||++++.++     ...+ .|. .+..+.+.++++++.+.+|+++...+.+.           +.++.+.+
T Consensus       284 ~~A~~~~~~Ga~~l~~~d-----l~~~~~~~~~~~~~~~~i~~i~~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~  358 (555)
T 1jvn_A          284 QLAQKYYQQGADEVTFLN-----ITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFR  358 (555)
T ss_dssp             HHHHHHHHTTCSEEEEEE-----EC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEEe-----CCccccccCCCchHHHHHHHHHhhCCCcEEEeCccccchhcccccchHHHHHHHHHH
Confidence            799999999999986652     2221 111 12234778899998899999988777654           45888999


Q ss_pred             cCCCeeee-cCCC-------------ChhHHHHHHHh-cCC-CCcEEeecCC-----HHHH----HHHH---HhCCC---
Q 037779          113 IGVDYVDE-SEVL-------------TPADEENHINK-HNF-RVPFVCGCRN-----LGES----LRRI---REGAA---  161 (310)
Q Consensus       113 aGad~v~~-~~~~-------------~~~~~~~~~~~-~~~-~l~v~~~v~t-----~~ea----~~a~---~~Gad---  161 (310)
                      +|||.|.+ +...             +.+++++.+.+ .+. .+.+.++++.     +...    ....   ..|-.   
T Consensus       359 aGad~V~igt~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ivv~iD~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  438 (555)
T 1jvn_A          359 SGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCW  438 (555)
T ss_dssp             HTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCCTTCCCEEE
T ss_pred             cCCCEEEECCHHhhCchhhccccccccCHHHHHHHHHHhCCCcEEEEEEccccccccccccccccccccccCCCCCccee
Confidence            99999873 2211             11344555544 221 1444444431     0000    0000   00100   


Q ss_pred             -EEEEecCCC-CC-chHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHH
Q 037779          162 -MIRTKGEAG-TG-NIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADA  238 (310)
Q Consensus       162 -~I~v~g~~~-~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di  238 (310)
                       .+.++|+.. ++ +..+..+.+.+++.+...+..+++|+.     ..+.++++++.+++..++||  ||+|||+|++|+
T Consensus       439 ~~v~~~Gw~~~~~~~~~e~a~~~~~~Ga~~il~t~~~~dG~-----~~G~d~~li~~l~~~~~iPV--IasGGi~s~~d~  511 (555)
T 1jvn_A          439 YQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGS-----NSGYDLELIEHVKDAVKIPV--IASSGAGVPEHF  511 (555)
T ss_dssp             EEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEECCGGGTTT-----CSCCCHHHHHHHHHHCSSCE--EECSCCCSHHHH
T ss_pred             EEEEEecCccCCCCCHHHHHHHHHHcCCCEEEEeCCCCCCC-----CCCCCHHHHHHHHHhCCccE--EEECCCCCHHHH
Confidence             223333321 10 123444444445555444444444443     13458999999999889999  789999999999


Q ss_pred             HHHHH-cCCCEEEEccccccCCCHHHHHHHH
Q 037779          239 AMMMQ-LGCDGVFVGSGVFKSGDPVRRARAI  268 (310)
Q Consensus       239 ~~~~~-~GadgV~VGsai~~~~dp~~~~~~~  268 (310)
                      .++++ .|+++|++||+|+..+.....++++
T Consensus       512 ~~~~~~~G~~gvivg~a~~~~~~~~~e~~~~  542 (555)
T 1jvn_A          512 EEAFLKTRADACLGAGMFHRGEFTVNDVKEY  542 (555)
T ss_dssp             HHHHHHSCCSEEEESHHHHTTSCCHHHHHHH
T ss_pred             HHHHHhcCChHHHHHHHHHcCCCCHHHHHHH
Confidence            99998 8999999999999998877666554

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=99.48  E-value=6e-13  Score=118.26  Aligned_cols=188  Identities=14%  Similarity=0.124  Sum_probs=128.6

Q ss_pred             HHHHHHHHcCCcEEEe----cccccchhhhcCCCCCCCChHHHHHHHhh--cCcceEeeccccch-HHHHHHHHcCCCee
Q 037779           46 EQARIAEEAGACAVMA----LERVPADIRAQGGVARMSDPQLIKQIKSS--VTIPVMAKARIGHF-VEAQILEAIGVDYV  118 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~----l~~~~~d~r~~~G~~~~~~~~~i~~i~~~--~~lPv~~kd~i~~~-~~~~~~~~aGad~v  118 (310)
                      +.++.+.++|+++++.    .+++|. . .|+       +..++++|+.  .++|+.++.++.+. ..++.+.++|||.|
T Consensus        21 ~~i~~l~~~g~d~~h~DVmDg~Fvpn-~-~~G-------~~~v~~ir~~~~~~~~~dvhLmv~~p~~~i~~~~~aGad~i   91 (228)
T 3ovp_A           21 AECLRMLDSGADYLHLDVMDGHFVPN-I-TFG-------HPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQY   91 (228)
T ss_dssp             HHHHHHHHTTCSCEEEEEEBSSSSSC-B-CBC-------HHHHHHHHHHHCSSSCEEEEEECSCGGGGHHHHHHHTCSEE
T ss_pred             HHHHHHHHcCCCEEEEEecCCCcCcc-c-ccC-------HHHHHHHHHhhCCCCcEEEEEEeCCHHHHHHHHHHcCCCEE
Confidence            6789999999999743    224443 2 233       7899999998  58999888777543 34677888999998


Q ss_pred             eec--CCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEe--cCCCCCchHHHHHHHHHhhcceeccccc
Q 037779          119 DES--EVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTK--GEAGTGNIVEAVRHVRSVMGDIRVLRNM  194 (310)
Q Consensus       119 ~~~--~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~--g~~~~~~~~~~~~~~~~~~~~~~~l~~~  194 (310)
                      ..+  ....+.+.++.+++++....+.+...|+.+....+...+|+|.+.  .+++++-                  . +
T Consensus        92 tvH~Ea~~~~~~~i~~i~~~G~k~gval~p~t~~e~l~~~l~~~D~Vl~msv~pGf~Gq------------------~-f  152 (228)
T 3ovp_A           92 TFHLEATENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQ------------------K-F  152 (228)
T ss_dssp             EEEGGGCSCHHHHHHHHHHTTCEEEEEECTTSCGGGTGGGGGGCSEEEEESSCTTTCSC------------------C-C
T ss_pred             EEccCCchhHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHhccCCeEEEeeecCCCCCc------------------c-c
Confidence            843  223456677777765544444444455554443433457888653  2333321                  0 0


Q ss_pred             CchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779          195 DDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       195 ~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                                 .....+.++.+++. .++|+  .+.||| +++++.++.++|||.+++||+|++++||.+.++++++.++
T Consensus       153 -----------~~~~l~ki~~lr~~~~~~~I--~VdGGI-~~~t~~~~~~aGAd~~VvGsaIf~a~dp~~~~~~l~~~~~  218 (228)
T 3ovp_A          153 -----------MEDMMPKVHWLRTQFPSLDI--EVDGGV-GPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCS  218 (228)
T ss_dssp             -----------CGGGHHHHHHHHHHCTTCEE--EEESSC-STTTHHHHHHHTCCEEEESHHHHTCSCHHHHHHHHHHHHH
T ss_pred             -----------CHHHHHHHHHHHHhcCCCCE--EEeCCc-CHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHH
Confidence                       11134455666654 25677  458999 5999999999999999999999999999999999998876


Q ss_pred             cC
Q 037779          274 NY  275 (310)
Q Consensus       274 ~~  275 (310)
                      ++
T Consensus       219 ~~  220 (228)
T 3ovp_A          219 EA  220 (228)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=99.48  E-value=4.8e-13  Score=119.96  Aligned_cols=187  Identities=14%  Similarity=0.154  Sum_probs=127.0

Q ss_pred             HHHHHHHHcCCcEEEe----cccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccch-HHHHHHHHcCCCeee
Q 037779           46 EQARIAEEAGACAVMA----LERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHF-VEAQILEAIGVDYVD  119 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~----l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~-~~~~~~~~aGad~v~  119 (310)
                      +.++.+.++|+++++.    .+++|. . .|+       +..++++|+.+ ++|+.++-.+.+. ..++.+.++|||.+.
T Consensus        44 ~~i~~l~~~G~d~lHvDVmDg~FVpn-i-t~G-------~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGAd~it  114 (246)
T 3inp_A           44 DDVKAVLAAGADNIHFDVMDNHYVPN-L-TFG-------PMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIV  114 (246)
T ss_dssp             HHHHHHHHTTCCCEEEEEEBSSSSSC-B-CCC-------HHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTCSEEE
T ss_pred             HHHHHHHHcCCCEEEEEecCCCcCcc-h-hcC-------HHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCCCEEE
Confidence            7799999999999732    224442 1 233       78999999998 9999998777644 345778889999998


Q ss_pred             ec--CCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEe--cCCCCCchHHHHHHHHHhhcceecccccC
Q 037779          120 ES--EVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTK--GEAGTGNIVEAVRHVRSVMGDIRVLRNMD  195 (310)
Q Consensus       120 ~~--~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~--g~~~~~~~~~~~~~~~~~~~~~~~l~~~~  195 (310)
                      .+  ....+.+.++.+++.+....+.+...|+.+..+......|+|.+.  .+++++-                  +.  
T Consensus       115 vH~Ea~~~~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~~vD~VlvMsV~PGfgGQ------------------~f--  174 (246)
T 3inp_A          115 FHPEASEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIMSVNPGFGGQ------------------KF--  174 (246)
T ss_dssp             ECGGGCSCHHHHHHHHHTTTSEEEEEECTTCCSGGGTTTGGGCSEEEEECSCTTC--C------------------CC--
T ss_pred             EccccchhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHhcCCEEEEeeecCCCCCc------------------cc--
Confidence            43  223456777777665444444444456555544444478888653  2333321                  00  


Q ss_pred             chhHHhhhccCCCcHHHHHHHHhc-----CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 037779          196 DDEVFTFAKNIAAPYDLVMQTKQL-----GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ  270 (310)
Q Consensus       196 ~d~~~~~~~~~~~~~~l~~~i~~~-----~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~  270 (310)
                                .....+.++++++.     .++++  -+.|||+ ++++.++.++|||.+++||+|++++||.+.++++++
T Consensus       175 ----------i~~~l~KI~~lr~~~~~~~~~~~I--~VDGGI~-~~ti~~~~~aGAD~~V~GSaIf~a~dp~~~i~~l~~  241 (246)
T 3inp_A          175 ----------IPAMLDKAKEISKWISSTDRDILL--EIDGGVN-PYNIAEIAVCGVNAFVAGSAIFNSDSYKQTIDKMRD  241 (246)
T ss_dssp             ----------CTTHHHHHHHHHHHHHHHTSCCEE--EEESSCC-TTTHHHHHTTTCCEEEESHHHHTSSCHHHHHHHHHH
T ss_pred             ----------chHHHHHHHHHHHHHHhcCCCeeE--EEECCcC-HHHHHHHHHcCCCEEEEehHHhCCCCHHHHHHHHHH
Confidence                      11123334444332     24666  4579995 999999999999999999999999999999999998


Q ss_pred             HHHc
Q 037779          271 AVTN  274 (310)
Q Consensus       271 ~~~~  274 (310)
                      .+.+
T Consensus       242 ~i~~  245 (246)
T 3inp_A          242 ELNK  245 (246)
T ss_dssp             HHHT
T ss_pred             HHhh
Confidence            7753

>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1

Probab=99.48  E-value=5.4e-13  Score=118.05  Aligned_cols=165  Identities=20%  Similarity=0.290  Sum_probs=122.5

Q ss_pred             hHHHHHHHhhcCcceEeeccccchHH---------HHHHHHcCCCeee-ecCC--CChhHHHHHHHh-cCCCCcEEeecC
Q 037779           81 PQLIKQIKSSVTIPVMAKARIGHFVE---------AQILEAIGVDYVD-ESEV--LTPADEENHINK-HNFRVPFVCGCR  147 (310)
Q Consensus        81 ~~~i~~i~~~~~lPv~~kd~i~~~~~---------~~~~~~aGad~v~-~~~~--~~~~~~~~~~~~-~~~~l~v~~~v~  147 (310)
                      +..+..+++.+++|+.++| + ++.+         +..+.++||++|+ +++.  +...++.+.+.. +..|+.++++++
T Consensus        45 ~~~L~~v~~~~~i~v~aQd-v-~~~~~Ga~TGeis~~~l~~~Ga~~VllghseRR~~~~e~~~k~~~A~~~GL~~ivcVg  122 (226)
T 1w0m_A           45 HLELGLVSQSVDIPVYAQG-A-DVEAGGAHTAHVSLENIKEAGGSGVILNHSEAPLKLNDLARLVAKAKSLGLDVVVCAP  122 (226)
T ss_dssp             GGGHHHHHTTCSSCBEESC-C-SBSSCSSCTTCCBHHHHHHHTCCEEEECCTTSCCBHHHHHHHHHHHHHTTCEEEEEES
T ss_pred             HHHHHHHHHhcCCceEeeE-C-ChhhCCCccCCCCHHHHHHcCCCEEEEeeeeccCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence            7788999988899999998 3 2234         7788999999998 5544  444555555554 557899999999


Q ss_pred             CHHHHHHHHHhCCCEEEEecC--CCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEE
Q 037779          148 NLGESLRRIREGAAMIRTKGE--AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVV  225 (310)
Q Consensus       148 t~~ea~~a~~~Gad~I~v~g~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv  225 (310)
                      +..|...+...++++|.++..  .+||..+                .+.++|.+       ....++++.+.+  ++++ 
T Consensus       123 e~~e~~~~~~~~~~iIayep~waiGtG~~v----------------~t~~~d~~-------~~~~~~ir~~~~--~~~i-  176 (226)
T 1w0m_A          123 DPRTSLAAAALGPHAVAVEPPELIGTGRAV----------------SRYKPEAI-------VETVGLVSRHFP--EVSV-  176 (226)
T ss_dssp             SHHHHHHHHHTCCSEEEECCGGGTTTSCCH----------------HHHCHHHH-------HHHHHHHHHHCT--TSEE-
T ss_pred             CHHHHHHHhcCCCCEEEEcChhhhccCCCC----------------CCCChhHH-------HHHHHHHHhccC--CCEE-
Confidence            999998888889999999844  3444110                11122211       112344444432  4566 


Q ss_pred             EEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          226 HFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       226 ~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                       +++|||++.+++..+.+.|+||++||+++++++||.+.++++..++.+
T Consensus       177 -lyggsV~~~n~~~~~~~~giDG~LVG~a~l~a~~~~~~i~~l~~~~~~  224 (226)
T 1w0m_A          177 -ITGAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIVELAKPLSE  224 (226)
T ss_dssp             -EEESSCCSHHHHHHHHHTTCSEEEECHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             -EEeCCCCcHHHHHHHHhCCCCEEEECHHHHCCcCHHHHHHHHHHHHHh
Confidence             789999999999999999999999999999999999999999888754

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=99.47  E-value=3.9e-12  Score=120.61  Aligned_cols=197  Identities=18%  Similarity=0.167  Sum_probs=130.4

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc------------------
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG------------------  102 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~------------------  102 (310)
                      ...+++++.++.++|+-++...+..+.+.  .        .+.++++++.++-|+-++.+..                  
T Consensus        21 gvs~~~la~av~~aGglG~i~~~~~s~~~--l--------~~~i~~~~~~~~~p~gVnl~~~~~~~~~~~~~~~~~~~l~   90 (369)
T 3bw2_A           21 GVSVPQLAAAVCEAGGLGFLAAGYKTADG--M--------YQEIKRLRGLTGRPFGVNVFMPQPELAESGAVEVYAHQLA   90 (369)
T ss_dssp             TTSCHHHHHHHHHTTSBEEEECTTSCHHH--H--------HHHHHHHHHHCCSCEEEEEECCCCCC---CHHHHHHHHTH
T ss_pred             CCCcHHHHHHHHHCCCEEEcCCCCCCHHH--H--------HHHHHHHHHhCCCCeEEEEecCCCCcccHHHHHHHHHHHH
Confidence            36789999999999987763221111000  0        2345566666666665553321                  


Q ss_pred             --------------------chHHHHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCE
Q 037779          103 --------------------HFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAM  162 (310)
Q Consensus       103 --------------------~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~  162 (310)
                                          ..+.++.+.+.|++.|..+...++.++++.+++  .+++++..++|.+++.++.+.|+|+
T Consensus        91 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~~V~~~~g~~~~~~i~~~~~--~g~~v~~~v~t~~~a~~a~~~GaD~  168 (369)
T 3bw2_A           91 GEAAWYETELGDPDGGRDDGYDAKLAVLLDDPVPVVSFHFGVPDREVIARLRR--AGTLTLVTATTPEEARAVEAAGADA  168 (369)
T ss_dssp             HHHHHTTCCCCCSCSCSSTTHHHHHHHHHHSCCSEEEEESSCCCHHHHHHHHH--TTCEEEEEESSHHHHHHHHHTTCSE
T ss_pred             HHHHHcCCCcCcccccccccHHHHHHHHHhcCCCEEEEeCCCCcHHHHHHHHH--CCCeEEEECCCHHHHHHHHHcCCCE
Confidence                                023457778899999875533334566677765  4678899999999999999999999


Q ss_pred             EEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccC-CCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHH
Q 037779          163 IRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNI-AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMM  241 (310)
Q Consensus       163 I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~-~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~  241 (310)
                      |.+.|+.++++.                 .+..++..   .... ...+++++.+++..++||  |++|||.+++++.++
T Consensus       169 i~v~g~~~GGh~-----------------g~~~~~~~---~~~~~~~~~~~l~~i~~~~~iPV--iaaGGI~~~~~~~~~  226 (369)
T 3bw2_A          169 VIAQGVEAGGHQ-----------------GTHRDSSE---DDGAGIGLLSLLAQVREAVDIPV--VAAGGIMRGGQIAAV  226 (369)
T ss_dssp             EEEECTTCSEEC-----------------CCSSCCGG---GTTCCCCHHHHHHHHHHHCSSCE--EEESSCCSHHHHHHH
T ss_pred             EEEeCCCcCCcC-----------------CCcccccc---cccccccHHHHHHHHHHhcCceE--EEECCCCCHHHHHHH
Confidence            999765433321                 00000000   0000 113788888887678999  678999999999999


Q ss_pred             HHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779          242 MQLGCDGVFVGSGVFKSGDPVRRARAIVQAV  272 (310)
Q Consensus       242 ~~~GadgV~VGsai~~~~dp~~~~~~~~~~~  272 (310)
                      +++|||+|.+||+|+.++++.. .+.+++.+
T Consensus       227 l~~GAd~V~vGs~~~~~~e~~~-~~~~k~~i  256 (369)
T 3bw2_A          227 LAAGADAAQLGTAFLATDESGA-PGPHKRAL  256 (369)
T ss_dssp             HHTTCSEEEESHHHHTSTTCCC-CHHHHHHT
T ss_pred             HHcCCCEEEEChHHhCCcccCc-cHHHHHHH
Confidence            9999999999999999887642 23444443

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=99.46  E-value=5.1e-12  Score=112.17  Aligned_cols=158  Identities=12%  Similarity=0.146  Sum_probs=115.8

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeecCCC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVL  124 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~~  124 (310)
                      .++++++.++|++.| .+       +...    ....+.++++++.+.-.++.-.-+.+.++++.+.++||++|+.+.  
T Consensus        49 ~~~a~al~~gGi~~i-Ev-------t~~t----~~a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AGA~fIvsP~--  114 (232)
T 4e38_A           49 IPLGKVLAENGLPAA-EI-------TFRS----DAAVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAGATFVVSPG--  114 (232)
T ss_dssp             HHHHHHHHHTTCCEE-EE-------ETTS----TTHHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHTCSEEECSS--
T ss_pred             HHHHHHHHHCCCCEE-EE-------eCCC----CCHHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcCCCEEEeCC--
Confidence            478999999999998 33       1111    112678888888763223222223356889999999999998543  


Q ss_pred             ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779          125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK  204 (310)
Q Consensus       125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  204 (310)
                      ...++.+.+++  .+++++.++.|+.|+.+|.++|+|+++++....                                  
T Consensus       115 ~~~~vi~~~~~--~gi~~ipGv~TptEi~~A~~~Gad~vK~FPa~~----------------------------------  158 (232)
T 4e38_A          115 FNPNTVRACQE--IGIDIVPGVNNPSTVEAALEMGLTTLKFFPAEA----------------------------------  158 (232)
T ss_dssp             CCHHHHHHHHH--HTCEEECEECSHHHHHHHHHTTCCEEEECSTTT----------------------------------
T ss_pred             CCHHHHHHHHH--cCCCEEcCCCCHHHHHHHHHcCCCEEEECcCcc----------------------------------
Confidence            24566666665  378999999999999999999999999863210                                  


Q ss_pred             cCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          205 NIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       205 ~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                        ....++++.++.- .++|+  ++.||| +++++.+++++|+.++++||.++.
T Consensus       159 --~gG~~~lkal~~p~p~ip~--~ptGGI-~~~n~~~~l~aGa~~~vgGs~l~~  207 (232)
T 4e38_A          159 --SGGISMVKSLVGPYGDIRL--MPTGGI-TPSNIDNYLAIPQVLACGGTWMVD  207 (232)
T ss_dssp             --TTHHHHHHHHHTTCTTCEE--EEBSSC-CTTTHHHHHTSTTBCCEEECGGGC
T ss_pred             --ccCHHHHHHHHHHhcCCCe--eeEcCC-CHHHHHHHHHCCCeEEEECchhcC
Confidence              0124566666653 46888  578999 599999999999999999999985

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=99.46  E-value=2.8e-12  Score=116.01  Aligned_cols=196  Identities=16%  Similarity=0.219  Sum_probs=120.7

Q ss_pred             HHHHHHHHcCCcEEEecccccchh------------hh-cCCCCCCCChHHHHHHHhhcCcceEeeccccch--HHHHHH
Q 037779           46 EQARIAEEAGACAVMALERVPADI------------RA-QGGVARMSDPQLIKQIKSSVTIPVMAKARIGHF--VEAQIL  110 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~------------r~-~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~--~~~~~~  110 (310)
                      +.++.+.++|+++|+.-.|.. |+            +. ..|......++.++++++.+++|+++.+..+..  ..++.+
T Consensus        36 ~~~~~l~~~Gad~ielg~p~~-dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~~Pv~~m~~~~~~~~~~~~~a  114 (262)
T 1rd5_A           36 EALRLLDGCGADVIELGVPCS-DPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMFRSLAKM  114 (262)
T ss_dssp             HHHHHHHHTTCSSEEEECCCS-CCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEECCSHHHHSCCTHHH
T ss_pred             HHHHHHHHcCCCEEEECCCCC-CcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcHHHHHHHHHH
Confidence            679999999999984321222 10            00 011111112567888998899999876433210  012348


Q ss_pred             HHcCCCeeeecCCC--ChhHHHHHHHhcCCCCcEEeecCCHH-HHHHHHHhCCCEEEEec-CCCCCchHHHHHHHHHhhc
Q 037779          111 EAIGVDYVDESEVL--TPADEENHINKHNFRVPFVCGCRNLG-ESLRRIREGAAMIRTKG-EAGTGNIVEAVRHVRSVMG  186 (310)
Q Consensus       111 ~~aGad~v~~~~~~--~~~~~~~~~~~~~~~l~v~~~v~t~~-ea~~a~~~Gad~I~v~g-~~~~~~~~~~~~~~~~~~~  186 (310)
                      .++|+|+++.++..  ...++.+.+++++....+++..++.. .++...+.+.+++.+.. ..+++.-            
T Consensus       115 ~~aGadgv~v~d~~~~~~~~~~~~~~~~g~~~i~~~a~~t~~e~~~~~~~~~~g~v~~~s~~G~tG~~------------  182 (262)
T 1rd5_A          115 KEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPR------------  182 (262)
T ss_dssp             HHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHHHHCCSCEEEECSSCCBCTT------------
T ss_pred             HHcCCCEEEEcCCChhhHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHhcCCCeEEEecCCCCCCCC------------
Confidence            88999998865431  24455666666665555555555544 44555666667775542 2223210            


Q ss_pred             ceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC----CHH
Q 037779          187 DIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG----DPV  262 (310)
Q Consensus       187 ~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~----dp~  262 (310)
                           ..+           .....++++.+++..++||  ++.|||+|++++.+++++|||+|+|||+|++..    +|.
T Consensus       183 -----~~~-----------~~~~~~~i~~v~~~~~~pI--~vgGGI~~~e~~~~~~~~GAdgvvVGSai~~~~~~~~~~~  244 (262)
T 1rd5_A          183 -----ANV-----------NPRVESLIQEVKKVTNKPV--AVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPK  244 (262)
T ss_dssp             -----SCB-----------CTHHHHHHHHHHHHCSSCE--EEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHSSSSHH
T ss_pred             -----cCC-----------CchHHHHHHHHHhhcCCeE--EEECCcCCHHHHHHHHHcCCCEEEEChHHHhHHHhccChh
Confidence                 000           0113457778877678999  568999999999999999999999999999853    344


Q ss_pred             H---HHHHHHHHH
Q 037779          263 R---RARAIVQAV  272 (310)
Q Consensus       263 ~---~~~~~~~~~  272 (310)
                      .   .+++|.+.+
T Consensus       245 ~~~~~~~~~~~~l  257 (262)
T 1rd5_A          245 QGLRRLEEYARGM  257 (262)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3   445555444

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=99.46  E-value=1.2e-12  Score=118.76  Aligned_cols=190  Identities=19%  Similarity=0.222  Sum_probs=119.0

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcC-CCCCCCChHHHHHHHhhcCcceEeecccc-chH----HHHHHHHcCCCee-
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQG-GVARMSDPQLIKQIKSSVTIPVMAKARIG-HFV----EAQILEAIGVDYV-  118 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~-G~~~~~~~~~i~~i~~~~~lPv~~kd~i~-~~~----~~~~~~~aGad~v-  118 (310)
                      +..+.+.++|++.| .+. .   +|.-. |...   .+.++.++ ..+.+++.+.... ..+    .++.+.++|.+.+ 
T Consensus        27 ~~~~~l~~~Gad~i-elg-~---pr~~~~g~~~---~~~~~~l~-~~~~~~~pn~~~~~~~~~~~~f~~~a~~agg~~~i   97 (264)
T 1xm3_A           27 IQKEAVAVSESDIL-TFA-V---RRMNIFEASQ---PNFLEQLD-LSKYTLLPNTAGASTAEEAVRIARLAKASGLCDMI   97 (264)
T ss_dssp             HHHHHHHHHTCSEE-EEE-T---TSSTTC----------CTTCC-GGGSEEEEECTTCSSHHHHHHHHHHHHHTTCCSSE
T ss_pred             HHHHHHHHcCCeEE-EEc-c---cccccCCCCH---HHHHHHHH-hcCCeEcCCccccCCHHHHHHHHHHHHHcCCCCeE
Confidence            56789999999998 331 1   11100 1100   11122222 2345555554321 112    4556666654443 


Q ss_pred             e---ecCC----CChhHHHHHHHhc-CCCCcEE-eecCCHHHHHHHHHhCCCEEEEecCC-CCCchHHHHHHHHHhhcce
Q 037779          119 D---ESEV----LTPADEENHINKH-NFRVPFV-CGCRNLGESLRRIREGAAMIRTKGEA-GTGNIVEAVRHVRSVMGDI  188 (310)
Q Consensus       119 ~---~~~~----~~~~~~~~~~~~~-~~~l~v~-~~v~t~~ea~~a~~~Gad~I~v~g~~-~~~~~~~~~~~~~~~~~~~  188 (310)
                      .   ..+.    ....++.+.+++. +.++.++ ..++|.++++++.+.|+|+|...+.. +++.               
T Consensus        98 ~l~i~~d~~~~~~e~~~~~~~a~~~~~~g~~vi~~~~~~~~~a~~~~~~gad~v~~~~~~~Gt~~---------------  162 (264)
T 1xm3_A           98 KVEVIGCSRSLLPDPVETLKASEQLLEEGFIVLPYTSDDVVLARKLEELGVHAIMPGASPIGSGQ---------------  162 (264)
T ss_dssp             EECCBCCTTTCCBCHHHHHHHHHHHHHTTCCEEEEECSCHHHHHHHHHHTCSCBEECSSSTTCCC---------------
T ss_pred             EEeecCCCcccccchHHHHHHHHHHHCCCeEEEEEcCCCHHHHHHHHHhCCCEEEECCcccCCCC---------------
Confidence            2   2222    1223555656552 3366666 67788999999999999999543221 1110               


Q ss_pred             ecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 037779          189 RVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAI  268 (310)
Q Consensus       189 ~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~  268 (310)
                                      +. ...+.++++++..++||  ++.|||++++|+.+++++|||||+|||+|++++||.+++++|
T Consensus       163 ----------------~~-~~~~~l~~i~~~~~iPv--iv~gGI~t~eda~~~~~~GAdgViVGSAi~~a~dp~~~~~~l  223 (264)
T 1xm3_A          163 ----------------GI-LNPLNLSFIIEQAKVPV--IVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAM  223 (264)
T ss_dssp             ----------------CC-SCHHHHHHHHHHCSSCB--EEESCCCSHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHH
T ss_pred             ----------------CC-CCHHHHHHHHhcCCCCE--EEEeCCCCHHHHHHHHHcCCCEEEEcHHHhCCCCHHHHHHHH
Confidence                            11 13556777777678999  567999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCCh
Q 037779          269 VQAVTNYSDP  278 (310)
Q Consensus       269 ~~~~~~~~~~  278 (310)
                      ++.+++.+..
T Consensus       224 ~~~v~~~~~~  233 (264)
T 1xm3_A          224 KLAVEAGRLS  233 (264)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998764433

>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}

Probab=99.45  E-value=9.2e-13  Score=117.80  Aligned_cols=194  Identities=19%  Similarity=0.196  Sum_probs=123.9

Q ss_pred             HHHHHHHHHcCCcEE-EecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc-chHHHHH----HHH-cCCCe
Q 037779           45 PEQARIAEEAGACAV-MALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG-HFVEAQI----LEA-IGVDY  117 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I-~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~-~~~~~~~----~~~-aGad~  117 (310)
                      ..+.+++..+|+..+ ..+++++.. ...       ....+..+.   +++++.++--. +.+++..    ..+ .|-+.
T Consensus        26 ~~~~~ai~asg~eivtva~rR~~~~-~~~-------~~~~~~~i~---~~~~lpntaG~~taeeAv~~a~lare~~gt~~   94 (268)
T 2htm_A           26 GVMREAIAAAKAEVVTVSVRRVELK-APG-------HVGLLEALE---GVRLLPNTAGARTAEEAVRLARLGRLLTGERW   94 (268)
T ss_dssp             HHHHHHHHHTTCSEEEEEEEECC---------------CHHHHTT---TSEEEEBCTTCCSHHHHHHHHHHHHHHHCCSE
T ss_pred             HHHHHHHHHhCCCEEEEEccccCCC-CCC-------cccHHHHHh---hhhccCcccCCCCHHHHHHHHHhhhHhcCcce
Confidence            357888888999987 223333210 000       022333333   66666665443 3333322    222 45555


Q ss_pred             ee---e--cCCC--ChhHHHHHHHhc-CCCCcEE-eecCCHHHHHHHHHhCCCEEEEecC-CCCCchHHHHHHHHHhhcc
Q 037779          118 VD---E--SEVL--TPADEENHINKH-NFRVPFV-CGCRNLGESLRRIREGAAMIRTKGE-AGTGNIVEAVRHVRSVMGD  187 (310)
Q Consensus       118 v~---~--~~~~--~~~~~~~~~~~~-~~~l~v~-~~v~t~~ea~~a~~~Gad~I~v~g~-~~~~~~~~~~~~~~~~~~~  187 (310)
                      |-   +  +..+  .+.+.++..+.. .-|+.++ ....++..+++..+.|+++|..++. ++++.              
T Consensus        95 iKlEvi~d~~~l~pD~~~tv~aa~~L~k~Gf~Vlpy~~~D~~~ak~l~~~G~~aVmPlg~pIGsG~--------------  160 (268)
T 2htm_A           95 VKLEVIPDPTYLLPDPLETLKAAERLIEEDFLVLPYMGPDLVLAKRLAALGTATVMPLAAPIGSGW--------------  160 (268)
T ss_dssp             EBCCCCSCTTTTCCCHHHHHHHHHHHHHTTCEECCEECSCHHHHHHHHHHTCSCBEEBSSSTTTCC--------------
T ss_pred             eeeeeccCccccCcCHHHHHHHHHHHHHCCCEEeeccCCCHHHHHHHHhcCCCEEEecCccCcCCc--------------
Confidence            42   1  1222  233444444441 2245555 3457888889999999999988644 45441              


Q ss_pred             eecccccCchhHHhhhccCCCcHHHHHHHHh-cCC-CCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHH
Q 037779          188 IRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQ-LGR-LPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRA  265 (310)
Q Consensus       188 ~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~-~~~-iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~  265 (310)
                                       ++. ..++++.+.+ ..+ +||  |++|||++|+|+.+++++|||||+|||+|++++||..++
T Consensus       161 -----------------Gi~-~~~~L~~i~~~~~~~vPV--I~~GGI~tpsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma  220 (268)
T 2htm_A          161 -----------------GVR-TRALLELFAREKASLPPV--VVDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMA  220 (268)
T ss_dssp             -----------------CST-THHHHHHHHHTTTTSSCB--EEESCCCSHHHHHHHHHTTCCEEEESHHHHTSSSHHHHH
T ss_pred             -----------------ccC-CHHHHHHHHHhcCCCCeE--EEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHH
Confidence                             122 3556777777 567 999  569999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCChhhHHh
Q 037779          266 RAIVQAVTNYSDPDVLAE  283 (310)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~  283 (310)
                      ++|++++++.+.......
T Consensus       221 ~af~~Av~agr~a~~ag~  238 (268)
T 2htm_A          221 EAFRLAVEAGRKAYLAGP  238 (268)
T ss_dssp             HHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHcCC
Confidence            999999998766544433

>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1

Probab=99.45  E-value=6.8e-13  Score=117.40  Aligned_cols=162  Identities=22%  Similarity=0.288  Sum_probs=119.0

Q ss_pred             hHHHHHHHhhcCcceEeeccccchHH---------HHHHHHcCCCeee-ecCC--CChhHHHHHHHh-cCCCCcEEeecC
Q 037779           81 PQLIKQIKSSVTIPVMAKARIGHFVE---------AQILEAIGVDYVD-ESEV--LTPADEENHINK-HNFRVPFVCGCR  147 (310)
Q Consensus        81 ~~~i~~i~~~~~lPv~~kd~i~~~~~---------~~~~~~aGad~v~-~~~~--~~~~~~~~~~~~-~~~~l~v~~~v~  147 (310)
                      +..+..+++.+++|+.++| + ++.+         +..+.++|||+|+ +++.  +...++.+.+.. +..|+.++++++
T Consensus        48 ~~~L~~v~~~~~i~v~aQd-v-~~~~~Ga~TGeis~~~l~~~Ga~~VllghseRR~~~~e~~~k~~~A~~~GL~~ivcVg  125 (225)
T 1hg3_A           48 LVDLRMIAESVEIPVFAQH-I-DPIKPGSHTGHVLPEAVKEAGAVGTLLNHSENRMILADLEAAIRRAEEVGLMTMVCSN  125 (225)
T ss_dssp             HHHHHHHHHSCSSCBEESC-C-CSCCSBSCTTCCCHHHHHHTTCCEEEESCGGGCCBHHHHHHHHHHHHHHTCEEEEEES
T ss_pred             HHHHHHHHHhcCCceeeee-C-CcccCCCccCcccHHHHHHcCCCEEEECcchhcCCHHHHHHHHHHHHHCCCEEEEEeC
Confidence            8899999998999999998 3 2234         7788999999998 5543  444455555544 556899999999


Q ss_pred             CHHHHHHHHHhCCCEEEEecC--CCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEE
Q 037779          148 NLGESLRRIREGAAMIRTKGE--AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVV  225 (310)
Q Consensus       148 t~~ea~~a~~~Gad~I~v~g~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv  225 (310)
                      +..|...+...++++|.++..  .+||..                ..+.++|.+       ....++++.+.+  ++++ 
T Consensus       126 e~~e~~~~~~~~~~iIayep~waiGtG~~----------------v~t~~~d~~-------~~~~~~ir~~~~--~~~i-  179 (225)
T 1hg3_A          126 NPAVSAAVAALNPDYVAVEPPELIGTGIP----------------VSKAKPEVI-------TNTVELVKKVNP--EVKV-  179 (225)
T ss_dssp             SHHHHHHHHTTCCSEEEECCTTTTTTSCC----------------TTTSCTHHH-------HHHHHHHHHHCT--TSEE-
T ss_pred             CHHHHHHHhcCCCCEEEEeChhhhccCCC----------------CCCCChhHH-------HHHHHHHHhccC--CCEE-
Confidence            999998888889999999844  233310                012222211       112344444432  4556 


Q ss_pred             EEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 037779          226 HFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQA  271 (310)
Q Consensus       226 ~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~  271 (310)
                       +++|||++.+++..+.+.|+||++||+++++++||.+.++++.++
T Consensus       180 -lyggsV~~~n~~~~~~~~~vDG~LVG~a~l~a~~~~~~i~~l~~~  224 (225)
T 1hg3_A          180 -LCGAGISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAIWDLVSG  224 (225)
T ss_dssp             -EEESSCCSHHHHHHHHHTTCSEEEESHHHHTCSSHHHHHHHHHHT
T ss_pred             -EEeCCCCcHHHHHHHHhCCCCEEEeCHHHHCCcCHHHHHHHHHhh
Confidence             789999999999999999999999999999999999998888754

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=99.44  E-value=9.6e-12  Score=110.15  Aligned_cols=157  Identities=10%  Similarity=0.113  Sum_probs=112.7

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeeecCC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDESEV  123 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~  123 (310)
                      .+.++++.++|++.+ ++       +.+.    ....+.++++++.+ ++.+.....+ ..++++.+.++|||+++.+. 
T Consensus        32 ~~~~~al~~gGv~~i-el-------~~k~----~~~~~~i~~l~~~~~~l~vgaGtvl-~~d~~~~A~~aGAd~v~~p~-   97 (224)
T 1vhc_A           32 LPLADTLAKNGLSVA-EI-------TFRS----EAAADAIRLLRANRPDFLIAAGTVL-TAEQVVLAKSSGADFVVTPG-   97 (224)
T ss_dssp             HHHHHHHHHTTCCEE-EE-------ETTS----TTHHHHHHHHHHHCTTCEEEEESCC-SHHHHHHHHHHTCSEEECSS-
T ss_pred             HHHHHHHHHcCCCEE-EE-------eccC----chHHHHHHHHHHhCcCcEEeeCcEe-eHHHHHHHHHCCCCEEEECC-
Confidence            478999999999998 44       2211    11255677777776 4444444432 45889999999999998442 


Q ss_pred             CChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779          124 LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA  203 (310)
Q Consensus       124 ~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  203 (310)
                       ...++.+..++  .+.+.+.+++|+.|+.++.+.|+||++++.. .                                 
T Consensus        98 -~d~~v~~~ar~--~g~~~i~Gv~t~~e~~~A~~~Gad~vk~Fpa-~---------------------------------  140 (224)
T 1vhc_A           98 -LNPKIVKLCQD--LNFPITPGVNNPMAIEIALEMGISAVKFFPA-E---------------------------------  140 (224)
T ss_dssp             -CCHHHHHHHHH--TTCCEECEECSHHHHHHHHHTTCCEEEETTT-T---------------------------------
T ss_pred             -CCHHHHHHHHH--hCCCEEeccCCHHHHHHHHHCCCCEEEEeeC-c---------------------------------
Confidence             23455555655  4566777899999999999999999999621 0                                 


Q ss_pred             ccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccC
Q 037779          204 KNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKS  258 (310)
Q Consensus       204 ~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~  258 (310)
                        .....+.++.++... ++|+  ++.||| +++++.+++++ |+++|. ||+|+.+
T Consensus       141 --~~gG~~~lk~l~~~~~~ipv--vaiGGI-~~~N~~~~l~agga~~v~-gS~i~~~  191 (224)
T 1vhc_A          141 --ASGGVKMIKALLGPYAQLQI--MPTGGI-GLHNIRDYLAIPNIVACG-GSWFVEK  191 (224)
T ss_dssp             --TTTHHHHHHHHHTTTTTCEE--EEBSSC-CTTTHHHHHTSTTBCCEE-ECGGGCH
T ss_pred             --cccCHHHHHHHHhhCCCCeE--EEECCc-CHHHHHHHHhcCCCEEEE-EchhcCc
Confidence              001245566666654 6899  456999 59999999999 999999 9999984

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*

Probab=99.44  E-value=1.7e-12  Score=115.58  Aligned_cols=186  Identities=18%  Similarity=0.197  Sum_probs=127.8

Q ss_pred             HHHHHHHHcCCcEEE-e---cccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchH-HHHHHHHcCCCeeee
Q 037779           46 EQARIAEEAGACAVM-A---LERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFV-EAQILEAIGVDYVDE  120 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~-~---l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~-~~~~~~~aGad~v~~  120 (310)
                      +.++.+ ++|+++++ +   .+++|. . .|+       +..++++|+.++.|+.+...+.+.+ .++.+.++|||.+..
T Consensus        17 ~~i~~~-~~gad~lHvDvmDG~fvpn-~-t~G-------~~~v~~lr~~~~~~~dvhLmv~dp~~~i~~~~~aGAd~itv   86 (231)
T 3ctl_A           17 EQIEFI-DSHADYFHIDIMDGHFVPN-L-TLS-------PFFVSQVKKLATKPLDCHLMVTRPQDYIAQLARAGADFITL   86 (231)
T ss_dssp             HHHHHH-HTTCSCEEEEEECSSSSSC-C-CBC-------HHHHHHHHTTCCSCEEEEEESSCGGGTHHHHHHHTCSEEEE
T ss_pred             HHHHHH-HcCCCEEEEEEEeCccCcc-c-hhc-------HHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEE
Confidence            667788 99999962 2   224442 2 343       7899999999899998887776433 357888999999874


Q ss_pred             c--C-CCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEe--cCCCCCchHHHHHHHHHhhcceecccccC
Q 037779          121 S--E-VLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTK--GEAGTGNIVEAVRHVRSVMGDIRVLRNMD  195 (310)
Q Consensus       121 ~--~-~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~--g~~~~~~~~~~~~~~~~~~~~~~~l~~~~  195 (310)
                      +  . ...+.+.++.+++++....+.+...|+.+..+.+..++|+|.+.  .+++++-                  ..  
T Consensus        87 h~Ea~~~~~~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l~~~D~VlvmsV~pGfggQ------------------~f--  146 (231)
T 3ctl_A           87 HPETINGQAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTVDPGFAGQ------------------PF--  146 (231)
T ss_dssp             CGGGCTTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCTTCSSC------------------CC--
T ss_pred             CcccCCccHHHHHHHHHHcCCeEEEEEECCCcHHHHHHHHhcCCEEEEeeeccCcCCc------------------cc--
Confidence            3  2 23466777777775544445555567666655555689988643  2333321                  00  


Q ss_pred             chhHHhhhccCCCcHHHHHHHHhc-----CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEc-cccccCCC-HHHHHHHH
Q 037779          196 DDEVFTFAKNIAAPYDLVMQTKQL-----GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG-SGVFKSGD-PVRRARAI  268 (310)
Q Consensus       196 ~d~~~~~~~~~~~~~~l~~~i~~~-----~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VG-sai~~~~d-p~~~~~~~  268 (310)
                                .....+.++.+++.     .++++  -+.||| +++++.++.++|||.+++| |+|++++| |.+.+++|
T Consensus       147 ----------~~~~l~kI~~lr~~~~~~~~~~~I--~VdGGI-~~~~~~~~~~aGAd~~V~G~saif~~~d~~~~~~~~l  213 (231)
T 3ctl_A          147 ----------IPEMLDKLAELKAWREREGLEYEI--EVDGSC-NQATYEKLMAAGADVFIVGTSGLFNHAENIDEAWRIM  213 (231)
T ss_dssp             ----------CTTHHHHHHHHHHHHHHHTCCCEE--EEESCC-STTTHHHHHHHTCCEEEECTTTTGGGCSSHHHHHHHH
T ss_pred             ----------cHHHHHHHHHHHHHHhccCCCceE--EEECCc-CHHHHHHHHHcCCCEEEEccHHHhCCCCcHHHHHHHH
Confidence                      11123333444332     24676  458999 5999999999999999999 99999989 99999999


Q ss_pred             HHHHHc
Q 037779          269 VQAVTN  274 (310)
Q Consensus       269 ~~~~~~  274 (310)
                      ++.++.
T Consensus       214 ~~~~~~  219 (231)
T 3ctl_A          214 TAQILA  219 (231)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            887764

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=99.43  E-value=8.7e-13  Score=118.03  Aligned_cols=197  Identities=18%  Similarity=0.196  Sum_probs=126.3

Q ss_pred             HHHHHHHHHcCCcEEEeccccc---chhhh---------cCCCCCCCChHHHHHHHhhcCcceEeeccccc------hHH
Q 037779           45 PEQARIAEEAGACAVMALERVP---ADIRA---------QGGVARMSDPQLIKQIKSSVTIPVMAKARIGH------FVE  106 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~---~d~r~---------~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~------~~~  106 (310)
                      .+.++.+.++ +++|+.-=|..   .|...         ..|.......+.++++++.+++|+.+....+.      .+.
T Consensus        22 ~~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~  100 (248)
T 1geq_A           22 LNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNF  100 (248)
T ss_dssp             HHHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHH
T ss_pred             HHHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCCCEEEEeccchhhhcCHHHH
Confidence            3679999998 99984320110   01100         01111111266888999988999877653332      357


Q ss_pred             HHHHHHcCCCeeeecCC--CChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCC-EEEEec-CCCCCchHHHHHHHH
Q 037779          107 AQILEAIGVDYVDESEV--LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAA-MIRTKG-EAGTGNIVEAVRHVR  182 (310)
Q Consensus       107 ~~~~~~aGad~v~~~~~--~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad-~I~v~g-~~~~~~~~~~~~~~~  182 (310)
                      ++.+.++|||+|+.++.  ..+.++.+.+++++....+.++.+|..|..+....++| ++.+.. ++.++.-        
T Consensus       101 ~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~~d~~i~~~~~~G~~g~~--------  172 (248)
T 1geq_A          101 LAEAKASGVDGILVVDLPVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAR--------  172 (248)
T ss_dssp             HHHHHHHTCCEEEETTCCGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCSSEEEEECCC--------------
T ss_pred             HHHHHHCCCCEEEECCCChhhHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhcCCCeEEEEECCccCCCC--------
Confidence            78889999999986532  12345666666666556667777788887777766677 765431 1111110        


Q ss_pred             HhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC--C
Q 037779          183 SVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG--D  260 (310)
Q Consensus       183 ~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~--d  260 (310)
                               ....           ....+.++.+++..++||  +++|||++++++.+++++|+|+|+|||+|+++.  +
T Consensus       173 ---------~~~~-----------~~~~~~i~~l~~~~~~pi--~~~GGI~~~e~i~~~~~~Gad~vivGsai~~~~~~~  230 (248)
T 1geq_A          173 ---------EEIP-----------KTAYDLLRRAKRICRNKV--AVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEK  230 (248)
T ss_dssp             ----------CCC-----------HHHHHHHHHHHHHCSSCE--EEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHHH
T ss_pred             ---------CCCC-----------hhHHHHHHHHHhhcCCCE--EEEeecCCHHHHHHHHHcCCCEEEEcHHHHhhHhhC
Confidence                     0000           112567777777667899  578999988999999999999999999999863  4


Q ss_pred             HHHHHHHHHHHHH
Q 037779          261 PVRRARAIVQAVT  273 (310)
Q Consensus       261 p~~~~~~~~~~~~  273 (310)
                      + +.+++|.+.+.
T Consensus       231 ~-~~~~~~~~~~~  242 (248)
T 1geq_A          231 G-REATEFLKKKV  242 (248)
T ss_dssp             G-GGCHHHHHHHH
T ss_pred             h-HHHHHHHHHHH
Confidence            5 66677776664

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=99.43  E-value=5.1e-12  Score=114.66  Aligned_cols=181  Identities=16%  Similarity=0.120  Sum_probs=118.6

Q ss_pred             HHHHHHHHcCCcEEEeccccc-------chhhhc-----CCCCCCCChHHHHHHHhh-cCcceEeecccc------chHH
Q 037779           46 EQARIAEEAGACAVMALERVP-------ADIRAQ-----GGVARMSDPQLIKQIKSS-VTIPVMAKARIG------HFVE  106 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~-------~d~r~~-----~G~~~~~~~~~i~~i~~~-~~lPv~~kd~i~------~~~~  106 (310)
                      +.++.+.++|+|+|..--|..       .-.+..     .|.....-++.++++|+. +++|+......+      ...+
T Consensus        36 ~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f  115 (267)
T 3vnd_A           36 KIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGIDEF  115 (267)
T ss_dssp             HHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHH
T ss_pred             HHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHH
Confidence            679999999999983321211       111111     232222236788899987 899988754332      2346


Q ss_pred             HHHHHHcCCCeeeecCCCChh---HHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHHH
Q 037779          107 AQILEAIGVDYVDESEVLTPA---DEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRHV  181 (310)
Q Consensus       107 ~~~~~~aGad~v~~~~~~~~~---~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~~  181 (310)
                      ++.+.++|+|.+++++. +++   ++.+.+++++.....++. ..+.+.++...+.+.++|..- ....||.-       
T Consensus       116 ~~~~~~aGvdgvii~Dl-p~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~~~gfvY~vS~~GvTG~~-------  187 (267)
T 3vnd_A          116 YTKAQAAGVDSVLIADV-PVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQGEGYTYLLSRAGVTGTE-------  187 (267)
T ss_dssp             HHHHHHHTCCEEEETTS-CGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEESCCCCCC----------
T ss_pred             HHHHHHcCCCEEEeCCC-CHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCCcEEEEecCCCCCCc-------
Confidence            78899999999987654 333   556666666666444444 445566677777777777653 22223310       


Q ss_pred             HHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          182 RSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       182 ~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                                ..+           .....++++.+++..++||  +++|||++++++++.++.|||||+|||+|++
T Consensus       188 ----------~~~-----------~~~~~~~v~~vr~~~~~pv--~vGfGI~~~e~~~~~~~~gADgvVVGSaiv~  240 (267)
T 3vnd_A          188 ----------SKA-----------GEPIENILTQLAEFNAPPP--LLGFGIAEPEQVRAAIKAGAAGAISGSAVVK  240 (267)
T ss_dssp             --------------------------CHHHHHHHHHTTTCCCE--EECSSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred             ----------cCC-----------cHHHHHHHHHHHHhcCCCE--EEECCcCCHHHHHHHHHcCCCEEEECHHHHH
Confidence                      000           1123678888888778999  5699999999999999999999999999997

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=99.43  E-value=1.7e-11  Score=107.84  Aligned_cols=158  Identities=12%  Similarity=0.093  Sum_probs=113.7

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeeecCC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDESEV  123 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~  123 (310)
                      .+.++++.++|++.+ ++       +.+.    ....+.++++++.+ ++.+.... +.+.++++.+.++|||+++.+. 
T Consensus        31 ~~~~~al~~gGv~~i-el-------~~k~----~~~~~~i~~l~~~~~~~~vgagt-vi~~d~~~~A~~aGAd~v~~p~-   96 (214)
T 1wbh_A           31 VPMAKALVAGGVRVL-NV-------TLRT----ECAVDAIRAIAKEVPEAIVGAGT-VLNPQQLAEVTEAGAQFAISPG-   96 (214)
T ss_dssp             HHHHHHHHHTTCCEE-EE-------ESCS----TTHHHHHHHHHHHCTTSEEEEES-CCSHHHHHHHHHHTCSCEEESS-
T ss_pred             HHHHHHHHHcCCCEE-EE-------eCCC----hhHHHHHHHHHHHCcCCEEeeCE-EEEHHHHHHHHHcCCCEEEcCC-
Confidence            478999999999998 44       2211    11155677777776 34444444 3345889999999999998542 


Q ss_pred             CChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779          124 LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA  203 (310)
Q Consensus       124 ~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  203 (310)
                       ...++.+..+.  .+.+.+.+++|+.|+.++.+.|+||++++.. .                                 
T Consensus        97 -~d~~v~~~~~~--~g~~~i~G~~t~~e~~~A~~~Gad~v~~Fpa-~---------------------------------  139 (214)
T 1wbh_A           97 -LTEPLLKAATE--GTIPLIPGISTVSELMLGMDYGLKEFKFFPA-E---------------------------------  139 (214)
T ss_dssp             -CCHHHHHHHHH--SSSCEEEEESSHHHHHHHHHTTCCEEEETTT-T---------------------------------
T ss_pred             -CCHHHHHHHHH--hCCCEEEecCCHHHHHHHHHCCCCEEEEecC-c---------------------------------
Confidence             23455555555  4567777899999999999999999999621 0                                 


Q ss_pred             ccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccCC
Q 037779          204 KNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSG  259 (310)
Q Consensus       204 ~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~~  259 (310)
                        .....+.++.++... ++|+  ++.||| +++++.+++++ |+++|. ||+|+.++
T Consensus       140 --~~gG~~~lk~i~~~~~~ipv--vaiGGI-~~~n~~~~l~agg~~~v~-gS~i~~~~  191 (214)
T 1wbh_A          140 --ANGGVKALQAIAGPFSQVRF--CPTGGI-SPANYRDYLALKSVLCIG-GSWLVPAD  191 (214)
T ss_dssp             --TTTHHHHHHHHHTTCTTCEE--EEBSSC-CTTTHHHHHTSTTBSCEE-EGGGSCHH
T ss_pred             --cccCHHHHHHHhhhCCCCeE--EEECCC-CHHHHHHHHhcCCCeEEE-eccccChh
Confidence              001245566676654 7899  456999 59999999999 999999 99999854

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=99.42  E-value=5.3e-12  Score=114.76  Aligned_cols=179  Identities=20%  Similarity=0.142  Sum_probs=118.1

Q ss_pred             HHHHHHHHcCCcEEEecc-cccchhh------------hc-CCCCCCCChHHHHHHHhh-cCcceEeeccc------cch
Q 037779           46 EQARIAEEAGACAVMALE-RVPADIR------------AQ-GGVARMSDPQLIKQIKSS-VTIPVMAKARI------GHF  104 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~~d~r------------~~-~G~~~~~~~~~i~~i~~~-~~lPv~~kd~i------~~~  104 (310)
                      +.++.+.++|+|.| -+. |.. |+-            +. .|......++.++++|+. .++|++.....      +..
T Consensus        38 ~~~~~l~~~GaD~i-ElGiPfS-DP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~  115 (271)
T 3nav_A           38 AIMQTLIDAGADAL-ELGMPFS-DPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLVYARGID  115 (271)
T ss_dssp             HHHHHHHHTTCSSE-EEECCCC-CGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHH
T ss_pred             HHHHHHHHcCCCEE-EECCCCC-CCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHH
Confidence            67999999999998 343 221 111            11 132222335678888887 79999875432      223


Q ss_pred             HHHHHHHHcCCCeeeecCCCChh---HHHHHHHhcCCCCcEEeec-CCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHH
Q 037779          105 VEAQILEAIGVDYVDESEVLTPA---DEENHINKHNFRVPFVCGC-RNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVR  179 (310)
Q Consensus       105 ~~~~~~~~aGad~v~~~~~~~~~---~~~~~~~~~~~~l~v~~~v-~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~  179 (310)
                      .+++.+.++|+|++++++. +++   ++.+.+++++.....++.. .+.+.++...+.+.++|..- ....||.-     
T Consensus       116 ~f~~~~~~aGvdGvIipDl-p~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~~gfiY~vs~~GvTG~~-----  189 (271)
T 3nav_A          116 DFYQRCQKAGVDSVLIADV-PTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKGYTYLLSRAGVTGAE-----  189 (271)
T ss_dssp             HHHHHHHHHTCCEEEETTS-CGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHCCSCEEECCCC-----------
T ss_pred             HHHHHHHHCCCCEEEECCC-CHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHCCCeEEEEeccCCCCcc-----
Confidence            5678999999999887654 333   4555566666664444544 44566777778888888653 22223310     


Q ss_pred             HHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          180 HVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       180 ~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                                  ..+.           ....++++.+++..++||  ++++||++++++.+.++.|||||+|||+|++
T Consensus       190 ------------~~~~-----------~~~~~~v~~vr~~~~~Pv--~vGfGIst~e~~~~~~~~gADgvIVGSAiv~  242 (271)
T 3nav_A          190 ------------TKAN-----------MPVHALLERLQQFDAPPA--LLGFGISEPAQVKQAIEAGAAGAISGSAVVK  242 (271)
T ss_dssp             --------------CC-----------HHHHHHHHHHHHTTCCCE--EECSSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred             ------------cCCc-----------hhHHHHHHHHHHhcCCCE--EEECCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence                        0000           113567888888778999  5699999999999999999999999999997

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=99.42  E-value=8.7e-12  Score=110.50  Aligned_cols=157  Identities=14%  Similarity=0.060  Sum_probs=111.6

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeeecCC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDESEV  123 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~  123 (310)
                      .+.++++.++|++.+ ++       +.+.    ....+.++++++.+ ++.+..... ...++++.+.++|||+++.+. 
T Consensus        41 ~~~~~al~~gGv~~i-el-------~~k~----~~~~~~i~~l~~~~~~~~igagtv-l~~d~~~~A~~aGAd~v~~p~-  106 (225)
T 1mxs_A           41 LPLADALAAGGIRTL-EV-------TLRS----QHGLKAIQVLREQRPELCVGAGTV-LDRSMFAAVEAAGAQFVVTPG-  106 (225)
T ss_dssp             HHHHHHHHHTTCCEE-EE-------ESSS----THHHHHHHHHHHHCTTSEEEEECC-CSHHHHHHHHHHTCSSEECSS-
T ss_pred             HHHHHHHHHCCCCEE-EE-------ecCC----ccHHHHHHHHHHhCcccEEeeCeE-eeHHHHHHHHHCCCCEEEeCC-
Confidence            478999999999998 44       2111    01145677677665 454444443 345789999999999998442 


Q ss_pred             CChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779          124 LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA  203 (310)
Q Consensus       124 ~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  203 (310)
                       ...++.+..+.  .++..+.+++|+.|+..+.+.|+||++++..    .                              
T Consensus       107 -~d~~v~~~~~~--~g~~~i~G~~t~~e~~~A~~~Gad~vk~FPa----~------------------------------  149 (225)
T 1mxs_A          107 -ITEDILEAGVD--SEIPLLPGISTPSEIMMGYALGYRRFKLFPA----E------------------------------  149 (225)
T ss_dssp             -CCHHHHHHHHH--CSSCEECEECSHHHHHHHHTTTCCEEEETTH----H------------------------------
T ss_pred             -CCHHHHHHHHH--hCCCEEEeeCCHHHHHHHHHCCCCEEEEccC----c------------------------------
Confidence             23455555554  4567777899999999999999999999520    0                              


Q ss_pred             ccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccC
Q 037779          204 KNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKS  258 (310)
Q Consensus       204 ~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~  258 (310)
                       .. ...+.++.++... ++|++  +.||| +++++.++++ .|+++|. ||+|+.+
T Consensus       150 -~~-~G~~~lk~i~~~~~~ipvv--aiGGI-~~~N~~~~l~~~Ga~~v~-gSai~~~  200 (225)
T 1mxs_A          150 -IS-GGVAAIKAFGGPFGDIRFC--PTGGV-NPANVRNYMALPNVMCVG-TTWMLDS  200 (225)
T ss_dssp             -HH-THHHHHHHHHTTTTTCEEE--EBSSC-CTTTHHHHHHSTTBCCEE-ECTTSCH
T ss_pred             -cc-cCHHHHHHHHhhCCCCeEE--EECCC-CHHHHHHHHhccCCEEEE-EchhcCc
Confidence             00 0234566666644 78994  56999 6999999999 6999999 9999984

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=99.41  E-value=4.2e-12  Score=110.43  Aligned_cols=177  Identities=20%  Similarity=0.188  Sum_probs=113.5

Q ss_pred             HHHHHHHHcCCcEEEecccccchhh--hcCCCCCCCChHHHHHHHhhc-CcceEeeccccc-hH-HHHHHHHcCCCeeee
Q 037779           46 EQARIAEEAGACAVMALERVPADIR--AQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGH-FV-EAQILEAIGVDYVDE  120 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r--~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~-~~-~~~~~~~aGad~v~~  120 (310)
                      +.++.+.+ |++++- +    .+..  .++       ++.++++++.+ +.|+.+..++.+ .+ .++.+.++|||+++.
T Consensus        17 ~~~~~~~~-~v~~ie-v----~~~~~~~~g-------~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~v   83 (207)
T 3ajx_A           17 ELAGKVAE-YVDIIE-L----GTPLIKAEG-------LSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVTV   83 (207)
T ss_dssp             HHHHHHGG-GCSEEE-E----CHHHHHHHC-------THHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHhhc-cCCEEE-E----CcHHHHhhC-------HHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCEEEE
Confidence            44566655 778873 3    1221  233       67899999887 889887544433 23 467888999999975


Q ss_pred             cCCCC---hhHHHHHHHhcCCCCcEEeecC---CHHH-HHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccc
Q 037779          121 SEVLT---PADEENHINKHNFRVPFVCGCR---NLGE-SLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRN  193 (310)
Q Consensus       121 ~~~~~---~~~~~~~~~~~~~~l~v~~~v~---t~~e-a~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~  193 (310)
                      +....   ..++.+.++++  ++.++++++   |+.+ +..+.+.|+|++++.. ..++.                 ...
T Consensus        84 h~~~~~~~~~~~~~~~~~~--g~~~gv~~~s~~~p~~~~~~~~~~g~d~v~~~~-~~~~~-----------------~~g  143 (207)
T 3ajx_A           84 LGSADDSTIAGAVKAAQAH--NKGVVVDLIGIEDKATRAQEVRALGAKFVEMHA-GLDEQ-----------------AKP  143 (207)
T ss_dssp             ETTSCHHHHHHHHHHHHHH--TCEEEEECTTCSSHHHHHHHHHHTTCSEEEEEC-CHHHH-----------------TST
T ss_pred             eccCChHHHHHHHHHHHHc--CCceEEEEecCCChHHHHHHHHHhCCCEEEEEe-ccccc-----------------ccC
Confidence            43322   23344555443  444555554   6666 5555677999996641 11100                 000


Q ss_pred             cCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 037779          194 MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQA  271 (310)
Q Consensus       194 ~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~  271 (310)
                      .          . ... +.++.+.+. ++|++  +.|||+ ++++.+++++|||+|+|||+|++++||.+.+++|++.
T Consensus       144 ~----------~-~~~-~~i~~~~~~-~~pi~--v~GGI~-~~~~~~~~~aGad~vvvGsaI~~~~dp~~~~~~~~~~  205 (207)
T 3ajx_A          144 G----------F-DLN-GLLAAGEKA-RVPFS--VAGGVK-VATIPAVQKAGAEVAVAGGAIYGAADPAAAAKELRAA  205 (207)
T ss_dssp             T----------C-CTH-HHHHHHHHH-TSCEE--EESSCC-GGGHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHT
T ss_pred             C----------C-chH-HHHHHhhCC-CCCEE--EECCcC-HHHHHHHHHcCCCEEEEeeeccCCCCHHHHHHHHHHH
Confidence            0          0 011 334444332 57984  579995 9999999999999999999999999999999998764

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=99.40  E-value=1.9e-11  Score=115.64  Aligned_cols=185  Identities=15%  Similarity=0.198  Sum_probs=122.1

Q ss_pred             CccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCC
Q 037779           37 GVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVD  116 (310)
Q Consensus        37 g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad  116 (310)
                      +.|....++++|.++.+.|.-.+... ..+.+.          ..+.++++++..++|+.++......+.++.+.++|+|
T Consensus        51 apM~~vt~~~lA~avA~~GGlgii~~-~~s~e~----------~~~~I~~vk~~~~~pvga~ig~~~~e~a~~l~eaGad  119 (361)
T 3khj_A           51 SAMDTVTEHLMAVGMARLGGIGIIHK-NMDMES----------QVNEVLKVKNSGGLRVGAAIGVNEIERAKLLVEAGVD  119 (361)
T ss_dssp             CSSTTTCSHHHHHHHHHTTCEEEECS-SSCHHH----------HHHHHHHHHHTTCCCCEEEECTTCHHHHHHHHHTTCS
T ss_pred             ecCCCCCcHHHHHHHHHcCCCeEEec-CCCHHH----------HHHHHHHHHhccCceEEEEeCCCHHHHHHHHHHcCcC
Confidence            34455667899998777666654221 111111          1456777777778999888766555778899999999


Q ss_pred             eeeec-CCCChhH---HHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecc
Q 037779          117 YVDES-EVLTPAD---EENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVL  191 (310)
Q Consensus       117 ~v~~~-~~~~~~~---~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l  191 (310)
                      .|++. ....+..   .++.+++. .++++++ .+.|.++++.+.+.|+|+|.+....++...-             +.+
T Consensus       120 ~I~ld~a~G~~~~~~~~i~~i~~~-~~~~Vivg~v~t~e~A~~l~~aGaD~I~VG~~~Gs~~~t-------------r~~  185 (361)
T 3khj_A          120 VIVLDSAHGHSLNIIRTLKEIKSK-MNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICTT-------------RIV  185 (361)
T ss_dssp             EEEECCSCCSBHHHHHHHHHHHHH-CCCEEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTCCH-------------HHH
T ss_pred             eEEEeCCCCCcHHHHHHHHHHHHh-cCCcEEEccCCCHHHHHHHHHcCcCEEEEecCCCcCCCc-------------ccc
Confidence            98742 2223333   34444443 3788886 7899999999999999999984111110000             000


Q ss_pred             cccCchhHHhhhccC-CCcHHHHHHHHh---cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779          192 RNMDDDEVFTFAKNI-AAPYDLVMQTKQ---LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD  260 (310)
Q Consensus       192 ~~~~~d~~~~~~~~~-~~~~~l~~~i~~---~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d  260 (310)
                      .            +. .+....+..+.+   ..++||  |++|||.+++|+.+++++||++|++||+|+.+++
T Consensus       186 ~------------g~g~p~~~~i~~v~~~~~~~~iPV--IA~GGI~~~~di~kala~GAd~V~vGs~~~~t~E  244 (361)
T 3khj_A          186 A------------GVGVPQITAIEKCSSVASKFGIPI--IADGGIRYSGDIGKALAVGASSVMIGSILAGTEE  244 (361)
T ss_dssp             T------------CBCCCHHHHHHHHHHHHHHHTCCE--EEESCCCSHHHHHHHHHHTCSEEEESTTTTTBTT
T ss_pred             c------------CCCCCcHHHHHHHHHHHhhcCCeE--EEECCCCCHHHHHHHHHcCCCEEEEChhhhcCCc
Confidence            0            11 123444455433   246899  6789999999999999999999999999999764

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=99.38  E-value=9.4e-12  Score=112.91  Aligned_cols=182  Identities=20%  Similarity=0.258  Sum_probs=119.3

Q ss_pred             CccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHh--hcCcceEeeccccc----------
Q 037779           37 GVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS--SVTIPVMAKARIGH----------  103 (310)
Q Consensus        37 g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~--~~~lPv~~kd~i~~----------  103 (310)
                      |.+....++ ++++.+.+.|+++|...      .            ..++.+++  ..++|++++..-+.          
T Consensus        39 ~p~~~~~~~~~~~~~~~~~g~~~i~~~------~------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~  100 (273)
T 2qjg_A           39 GPIKGLIDIRKTVNDVAEGGANAVLLH------K------------GIVRHGHRGYGKDVGLIIHLSGGTAISPNPLKKV  100 (273)
T ss_dssp             CSCTTSSSHHHHHHHHHHHTCSEEEEC------H------------HHHHSCCCSSSCCCEEEEECEECCTTSSSTTCCE
T ss_pred             CCCcchhhHHHHHHHHHhcCCCEEEeC------H------------HHHHHHHHhhcCCCCEEEEEcCCCcCCCCcccch
Confidence            445555565 68999999999998421      1            11111111  12456665422111          


Q ss_pred             -hHHHHHHHHcCCCee--e-ecCCCChhH-------HHHHHHhcCCCCcEEeec----------CCH---HHH-HHHHHh
Q 037779          104 -FVEAQILEAIGVDYV--D-ESEVLTPAD-------EENHINKHNFRVPFVCGC----------RNL---GES-LRRIRE  158 (310)
Q Consensus       104 -~~~~~~~~~aGad~v--~-~~~~~~~~~-------~~~~~~~~~~~l~v~~~v----------~t~---~ea-~~a~~~  158 (310)
                       .+.++.+.++|++.|  . .....+..+       +.+.+++  .++++++.+          .+.   +++ +.+.+.
T Consensus       101 ~~~~v~~a~~~Ga~~v~~~l~~~~~~~~~~~~~~~~v~~~~~~--~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~  178 (273)
T 2qjg_A          101 IVTTVEEAIRMGADAVSIHVNVGSDEDWEAYRDLGMIAETCEY--WGMPLIAMMYPRGKHIQNERDPELVAHAARLGAEL  178 (273)
T ss_dssp             ECSCHHHHHHTTCSEEEEEEEETSTTHHHHHHHHHHHHHHHHH--HTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHH--cCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHc
Confidence             356778889999999  3 222223222       2333332  355555544          333   455 677789


Q ss_pred             CCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCC--HH
Q 037779          159 GAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVAT--PA  236 (310)
Q Consensus       159 Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t--~~  236 (310)
                      |+|+|+++.   +                                    .+++.++.+.+..++||  ++.|||++  .+
T Consensus       179 Gad~i~~~~---~------------------------------------~~~~~l~~i~~~~~ipv--va~GGi~~~~~~  217 (273)
T 2qjg_A          179 GADIVKTSY---T------------------------------------GDIDSFRDVVKGCPAPV--VVAGGPKTNTDE  217 (273)
T ss_dssp             TCSEEEECC---C------------------------------------SSHHHHHHHHHHCSSCE--EEECCSCCSSHH
T ss_pred             CCCEEEECC---C------------------------------------CCHHHHHHHHHhCCCCE--EEEeCCCCCCHH
Confidence            999999861   0                                    13556666666567899  56899984  66


Q ss_pred             H----HHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChh
Q 037779          237 D----AAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPD  279 (310)
Q Consensus       237 d----i~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~  279 (310)
                      +    +.+++++|++||++||+|++++||.+.+++|.+.++....+.
T Consensus       218 ~~~~~~~~~~~~Ga~gv~vg~~i~~~~~~~~~~~~l~~~~~~~~~~~  264 (273)
T 2qjg_A          218 EFLQMIKDAMEAGAAGVAVGRNIFQHDDVVGITRAVCKIVHENADVE  264 (273)
T ss_dssp             HHHHHHHHHHHHTCSEEECCHHHHTSSSHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHHcCCcEEEeeHHhhCCCCHHHHHHHHHHHHhcCCCHH
Confidence            6    777778999999999999999999999999999998776543

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=99.37  E-value=2.8e-11  Score=109.88  Aligned_cols=198  Identities=20%  Similarity=0.161  Sum_probs=123.2

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhh------------h-cCCCCCCCChHHHHHHHhh-cCcceEeeccc------cch
Q 037779           45 PEQARIAEEAGACAVMALERVPADIR------------A-QGGVARMSDPQLIKQIKSS-VTIPVMAKARI------GHF  104 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r------------~-~~G~~~~~~~~~i~~i~~~-~~lPv~~kd~i------~~~  104 (310)
                      .+.++.+.++|+|+|..--|.. |+.            . .+|......++.++++++. +++|+.+....      +..
T Consensus        34 ~~~~~~l~~~GaD~ieig~P~s-dp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~  112 (268)
T 1qop_A           34 LKIIDTLIDAGADALELGVPFS-DPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGID  112 (268)
T ss_dssp             HHHHHHHHHTTCSSEEEECCCS-CCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHH
T ss_pred             HHHHHHHHHCCCCEEEECCCCC-CccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHH
Confidence            3679999999999984321221 110            0 0121111124678999998 89998763211      123


Q ss_pred             HHHHHHHHcCCCeeeecCCC--ChhHHHHHHHhcCCCC-cEEeecCCHHHHHHHHHhCCCEEEEecC-CCCCchHHHHHH
Q 037779          105 VEAQILEAIGVDYVDESEVL--TPADEENHINKHNFRV-PFVCGCRNLGESLRRIREGAAMIRTKGE-AGTGNIVEAVRH  180 (310)
Q Consensus       105 ~~~~~~~~aGad~v~~~~~~--~~~~~~~~~~~~~~~l-~v~~~v~t~~ea~~a~~~Gad~I~v~g~-~~~~~~~~~~~~  180 (310)
                      .+++.+.++|+|+++.++..  ...++.+.+++++... .++....+.+.++...+.+..++.+... ++||..      
T Consensus       113 ~~~~~~~~aGadgii~~d~~~e~~~~~~~~~~~~g~~~i~l~~p~t~~~~i~~i~~~~~g~v~~~s~~G~tG~~------  186 (268)
T 1qop_A          113 AFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVTGAE------  186 (268)
T ss_dssp             HHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEEESSSSCCCSS------
T ss_pred             HHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCCcEEEEecCCcCCCc------
Confidence            56788899999998866542  2345666666666553 3333445556666666666656643221 233310      


Q ss_pred             HHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC--
Q 037779          181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS--  258 (310)
Q Consensus       181 ~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~--  258 (310)
                                 ..           ......++++.+++..++||  +++|||+|++++.+++..|||+|+|||+|++.  
T Consensus       187 -----------~~-----------~~~~~~~~i~~lr~~~~~pi--~vggGI~t~e~~~~~~~agAD~vVVGSai~~~~~  242 (268)
T 1qop_A          187 -----------NR-----------GALPLHHLIEKLKEYHAAPA--LQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIE  242 (268)
T ss_dssp             -----------SC-----------C--CCHHHHHHHHHTTCCCE--EEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHH
T ss_pred             -----------cC-----------CCchHHHHHHHHHhccCCcE--EEECCCCCHHHHHHHHHcCCCEEEEChHHhhhHh
Confidence                       00           01224678888888778898  56999999999999999999999999999875  


Q ss_pred             ---CCHH---HHHHHHHHHHH
Q 037779          259 ---GDPV---RRARAIVQAVT  273 (310)
Q Consensus       259 ---~dp~---~~~~~~~~~~~  273 (310)
                         .+|.   +.+++|.+.+.
T Consensus       243 ~~~~~~~~~~~~~~~~~~~l~  263 (268)
T 1qop_A          243 KNLASPKQMLAELRSFVSAMK  263 (268)
T ss_dssp             HTTTCHHHHHHHHHHHHHHHH
T ss_pred             hcccCchHHHHHHHHHHHHHH
Confidence               2323   34555655554

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2

Probab=99.37  E-value=1.2e-11  Score=109.65  Aligned_cols=187  Identities=15%  Similarity=0.171  Sum_probs=122.0

Q ss_pred             HHHHHHHHHcCCcEEE-e---cccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHH-HHHHHcCCCee
Q 037779           45 PEQARIAEEAGACAVM-A---LERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEA-QILEAIGVDYV  118 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~-~---l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~-~~~~~aGad~v  118 (310)
                      .+.++.++++|+++++ +   .+++|. . .|+       +..++++|+.+ +.|+.+.-.+.+.+.+ +.+..  ||.+
T Consensus        21 ~~~i~~~~~~g~d~iHvDvmDg~fvpn-~-t~G-------~~~v~~lr~~~p~~~~dvhLmv~dp~~~i~~~~~--Ad~i   89 (227)
T 1tqx_A           21 AEETQRMESLGAEWIHLDVMDMHFVPN-L-SFG-------PPVINNLKKYTKSIFFDVHLMVEYPEKYVPLLKT--SNQL   89 (227)
T ss_dssp             HHHHHHHHHTTCSEEEEEEEBSSSSSC-B-CCC-------HHHHHHHGGGCSSCEEEEEEESSCGGGGGGGCTT--SSEE
T ss_pred             HHHHHHHHHcCCCEEEEEEEeCCcCcc-h-hcC-------HHHHHHHHHhCCCCcEEEEEEEcCHHHHHHHHHh--CCEE
Confidence            3778899999999973 1   123331 1 333       78999999998 8999888777643322 22222  8887


Q ss_pred             eec--CCC-ChhHHHH---HHHhcCCCCcEEeecCCHHHHHHHH-Hh-CCCEEEEe--cCCCCCchHHHHHHHHHhhcce
Q 037779          119 DES--EVL-TPADEEN---HINKHNFRVPFVCGCRNLGESLRRI-RE-GAAMIRTK--GEAGTGNIVEAVRHVRSVMGDI  188 (310)
Q Consensus       119 ~~~--~~~-~~~~~~~---~~~~~~~~l~v~~~v~t~~ea~~a~-~~-Gad~I~v~--g~~~~~~~~~~~~~~~~~~~~~  188 (310)
                      ..+  ... .+...++   .+++.+....+.+..+|+.+..+.. +. .+|+|.+.  .+++++-               
T Consensus        90 tvH~ea~~~~~~~~i~~~~~i~~~G~k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq---------------  154 (227)
T 1tqx_A           90 TFHFEALNEDTERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQ---------------  154 (227)
T ss_dssp             EEEGGGGTTCHHHHHHHHHHHHTTTCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSC---------------
T ss_pred             EEeecCCccCHHHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCc---------------
Confidence            522  222 4566777   6665443333333445665554444 44 49999543  2333321               


Q ss_pred             ecccccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHH
Q 037779          189 RVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARA  267 (310)
Q Consensus       189 ~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~  267 (310)
                          .+           .....+.++++++.. ++++  .+.||| +++++.++.++|||.+++||+|++++||.+.+++
T Consensus       155 ----~f-----------~~~~l~ki~~lr~~~~~~~I--~VdGGI-~~~ti~~~~~aGAd~~V~GsaIf~~~d~~~~i~~  216 (227)
T 1tqx_A          155 ----SF-----------MHDMMGKVSFLRKKYKNLNI--QVDGGL-NIETTEISASHGANIIVAGTSIFNAEDPKYVIDT  216 (227)
T ss_dssp             ----CC-----------CGGGHHHHHHHHHHCTTCEE--EEESSC-CHHHHHHHHHHTCCEEEESHHHHTCSSHHHHHHH
T ss_pred             ----cc-----------chHHHHHHHHHHHhccCCeE--EEECCC-CHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHH
Confidence                00           112345555565543 5677  457999 5999999999999999999999999999999999


Q ss_pred             HHHHHHcC
Q 037779          268 IVQAVTNY  275 (310)
Q Consensus       268 ~~~~~~~~  275 (310)
                      |++.++..
T Consensus       217 l~~~~~~~  224 (227)
T 1tqx_A          217 MRVSVQKY  224 (227)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHHH
Confidence            98877643

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=99.34  E-value=2.1e-11  Score=110.46  Aligned_cols=197  Identities=15%  Similarity=0.119  Sum_probs=121.7

Q ss_pred             HHHHHHHHHcCCcEEEecc-cccchhh------------h-cCCCCCCCChHHHHHHHhhc-CcceEeecccc------c
Q 037779           45 PEQARIAEEAGACAVMALE-RVPADIR------------A-QGGVARMSDPQLIKQIKSSV-TIPVMAKARIG------H  103 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~-~~~~d~r------------~-~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~------~  103 (310)
                      .+.++.+.++|+|+| .+. |.. |+.            . ..|.....-++.++++++.+ ++|+.+....+      .
T Consensus        34 ~~~~~~l~~~G~D~I-ElG~P~s-dP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~  111 (262)
T 2ekc_A           34 LKAFKEVLKNGTDIL-EIGFPFS-DPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGL  111 (262)
T ss_dssp             HHHHHHHHHTTCSEE-EEECCCS-CCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCH
T ss_pred             HHHHHHHHHcCCCEE-EECCCCC-CcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHHHHhhH
Confidence            367999999999998 343 321 110            0 11221111246788999888 99998842221      1


Q ss_pred             hHHHHHHHHcCCCeeeecCCCChhH---HHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecC-CCCCchHHHH
Q 037779          104 FVEAQILEAIGVDYVDESEVLTPAD---EENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGE-AGTGNIVEAV  178 (310)
Q Consensus       104 ~~~~~~~~~aGad~v~~~~~~~~~~---~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~-~~~~~~~~~~  178 (310)
                      ..+++.+.++|+|+++.++. ++++   +.+.+++++..+..++ ..++.+.+....+.+..++...+. ..+|..    
T Consensus       112 ~~f~~~~~~aG~dgvii~dl-~~ee~~~~~~~~~~~gl~~i~l~~p~t~~~rl~~ia~~a~gfiy~vs~~g~TG~~----  186 (262)
T 2ekc_A          112 EKFCRLSREKGIDGFIVPDL-PPEEAEELKAVMKKYVLSFVPLGAPTSTRKRIKLICEAADEMTYFVSVTGTTGAR----  186 (262)
T ss_dssp             HHHHHHHHHTTCCEEECTTC-CHHHHHHHHHHHHHTTCEECCEECTTCCHHHHHHHHHHCSSCEEEESSCC---------
T ss_pred             HHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCCEEEEecCCccCCC----
Confidence            24567888999999987654 3443   3444555655533333 344555566666665556543222 122210    


Q ss_pred             HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                                      ..       .......++++.+++..++||  +++|||++++++.+ +..|||+|+|||+|++.
T Consensus       187 ----------------~~-------~~~~~~~~~v~~vr~~~~~pv--~vG~GI~t~e~~~~-~~~gADgvIVGSai~~~  240 (262)
T 2ekc_A          187 ----------------EK-------LPYERIKKKVEEYRELCDKPV--VVGFGVSKKEHARE-IGSFADGVVVGSALVKL  240 (262)
T ss_dssp             ---------------------------CHHHHHHHHHHHHHCCSCE--EEESSCCSHHHHHH-HHTTSSEEEECHHHHHH
T ss_pred             ----------------CC-------cCcccHHHHHHHHHhhcCCCE--EEeCCCCCHHHHHH-HHcCCCEEEECHHHHhh
Confidence                            00       000112467788887778898  56999999999999 78889999999999987


Q ss_pred             --CCHHHHHHHHHHHHHc
Q 037779          259 --GDPVRRARAIVQAVTN  274 (310)
Q Consensus       259 --~dp~~~~~~~~~~~~~  274 (310)
                        +++.+.+++|.+.++.
T Consensus       241 ~~~~~~~~~~~~~~~~~~  258 (262)
T 2ekc_A          241 AGQKKIEDLGNLVKELKE  258 (262)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHH
Confidence              5566777888777753

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=99.32  E-value=1.5e-10  Score=109.38  Aligned_cols=186  Identities=15%  Similarity=0.159  Sum_probs=118.6

Q ss_pred             CccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccc--cchHHHHHHHHcC
Q 037779           37 GVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARI--GHFVEAQILEAIG  114 (310)
Q Consensus        37 g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i--~~~~~~~~~~~aG  114 (310)
                      +.|..+.++++|.++.++|.-.+... ..+.+.          ..+.++++++...+++.+....  ...+.++.+.++|
T Consensus        52 apM~~vs~~~lA~avA~aGGlg~i~~-~~s~e~----------~~~~i~~vk~~~~l~vga~vg~~~~~~~~~~~lieaG  120 (366)
T 4fo4_A           52 ASMDTVTEARLAIALAQEGGIGFIHK-NMSIEQ----------QAAQVHQVKISGGLRVGAAVGAAPGNEERVKALVEAG  120 (366)
T ss_dssp             CCCTTTCSHHHHHHHHHTTCEEEECS-SSCHHH----------HHHHHHHHHTTTSCCCEEECCSCTTCHHHHHHHHHTT
T ss_pred             CCCCCCChHHHHHHHHHcCCceEeec-CCCHHH----------HHHHHHHHHhcCceeEEEEeccChhHHHHHHHHHhCC
Confidence            44556677899988888877665221 111111          0345666665544444433222  2347788999999


Q ss_pred             CCeeee-cCCCChhH---HHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhccee
Q 037779          115 VDYVDE-SEVLTPAD---EENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIR  189 (310)
Q Consensus       115 ad~v~~-~~~~~~~~---~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~  189 (310)
                      +|.|.+ +....+..   .++.++++.+++++++ .+.|.++++.+.++|+|+|.+. ...+++. .+           +
T Consensus       121 vd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aGAD~I~vG-~gpGs~~-~t-----------r  187 (366)
T 4fo4_A          121 VDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVG-IGPGSIC-TT-----------R  187 (366)
T ss_dssp             CSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEEC-SSCSTTB-CH-----------H
T ss_pred             CCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcCCCEEEEe-cCCCCCC-Cc-----------c
Confidence            999874 22222333   3455665555777766 5899999999999999999983 2111110 00           0


Q ss_pred             cccccCchhHHhhhccCC-CcHHHHHHHHh---cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779          190 VLRNMDDDEVFTFAKNIA-APYDLVMQTKQ---LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD  260 (310)
Q Consensus       190 ~l~~~~~d~~~~~~~~~~-~~~~l~~~i~~---~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d  260 (310)
                      ...            +.. +....+..+.+   ..++||  |++|||.++.++.+++++||++|++||+|+.++.
T Consensus       188 ~~~------------g~g~p~~~~l~~v~~~~~~~~iPV--IA~GGI~~~~di~kala~GAd~V~vGs~f~~t~E  248 (366)
T 4fo4_A          188 IVT------------GVGVPQITAIADAAGVANEYGIPV--IADGGIRFSGDISKAIAAGASCVMVGSMFAGTEE  248 (366)
T ss_dssp             HHH------------CCCCCHHHHHHHHHHHHGGGTCCE--EEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTT
T ss_pred             ccc------------CcccchHHHHHHHHHHHhhcCCeE--EEeCCCCCHHHHHHHHHcCCCEEEEChHhhcCCC
Confidence            000            111 23445555543   347999  6789999999999999999999999999998754

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}

Probab=99.29  E-value=1.4e-11  Score=109.96  Aligned_cols=182  Identities=14%  Similarity=0.030  Sum_probs=115.5

Q ss_pred             HHHHHHHHHcCCcEEEe-c---ccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccc-hHHHHHHHHcCCCeee
Q 037779           45 PEQARIAEEAGACAVMA-L---ERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGH-FVEAQILEAIGVDYVD  119 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~-l---~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~-~~~~~~~~~aGad~v~  119 (310)
                      .+.++.+.++|+++++. .   +++|. . .|+       +..++++|+.+..  -++..+.+ ...++.+.++|||.+.
T Consensus        29 ~~~i~~~~~~gad~lhvDvmDG~fvpn-~-t~G-------~~~v~~lr~~~~~--DvhLMv~~p~~~i~~~~~aGAd~it   97 (237)
T 3cu2_A           29 NEEVTTLLENQINVLHFDIADGQFSSL-F-TVG-------AIGIKYFPTHCFK--DVHLMVRNQLEVAKAVVANGANLVT   97 (237)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEBSSSSSC-B-CBC-------THHHHTSCTTSEE--EEEEECSCHHHHHHHHHHTTCSEEE
T ss_pred             HHHHHHHHHcCCCEEEEEEecCccccc-h-hhh-------HHHHHHHhhhCCC--CeEEEEECHHHHHHHHHHcCCCEEE
Confidence            36789999999999732 1   12221 1 222       5788888887643  33333332 2356889999999965


Q ss_pred             ec--CCCChhHHHHHHHhcCC-------CCcEEee--cCCHHHHHHHHHhCCCEEEEe--cCCCCCchHHHHHHHHHhhc
Q 037779          120 ES--EVLTPADEENHINKHNF-------RVPFVCG--CRNLGESLRRIREGAAMIRTK--GEAGTGNIVEAVRHVRSVMG  186 (310)
Q Consensus       120 ~~--~~~~~~~~~~~~~~~~~-------~l~v~~~--v~t~~ea~~a~~~Gad~I~v~--g~~~~~~~~~~~~~~~~~~~  186 (310)
                      .+  ....+.+.++.+++++.       ++.+++.  .+|+.+..+....++|+|.+.  ++.+++-             
T Consensus        98 vH~ea~~~~~~~i~~i~~~~~~~~~~~~g~~~gv~l~p~Tp~~~l~~~l~~~D~vlvMsv~pgfggq-------------  164 (237)
T 3cu2_A           98 LQLEQYHDFALTIEWLAKQKTTYANQVYPVLIGACLCPETPISELEPYLDQIDVIQLLTLDPRNGTK-------------  164 (237)
T ss_dssp             EETTCTTSHHHHHHHHTTCEEEETTEEEECEEEEEECTTSCGGGGTTTTTTCSEEEEESEETTTTEE-------------
T ss_pred             EecCCcccHHHHHHHHHhcccccccccCCceEEEEEeCCChHHHHHHHhhcCceeeeeeeccCcCCe-------------
Confidence            33  22235566666655300       4555554  467777666666689998652  3444331             


Q ss_pred             ceecccccCchhHHhhhccCCCcHHHHHHHHhcC-----CCCEEEEccCCCCCHHHHHHHHH--cCCCEEEEccccccCC
Q 037779          187 DIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG-----RLPVVHFAAGGVATPADAAMMMQ--LGCDGVFVGSGVFKSG  259 (310)
Q Consensus       187 ~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-----~iPVv~ia~GGI~t~~di~~~~~--~GadgV~VGsai~~~~  259 (310)
                            .+.           ....+.++++++..     ++|+  .+.||| +++++.++.+  +|||++++||+|+++ 
T Consensus       165 ------~f~-----------~~~l~ki~~lr~~~~~~~~~~~I--~vdGGI-~~~~~~~~~~~~aGad~~VvGSaIf~~-  223 (237)
T 3cu2_A          165 ------YPS-----------ELILDRVIQVEKRLGNRRVEKLI--NIDGSM-TLELAKYFKQGTHQIDWLVSGSALFSG-  223 (237)
T ss_dssp             ------CCH-----------HHHHHHHHHHHHHHGGGGGGCEE--EEESSC-CHHHHHHHHHSSSCCCCEEECGGGGSS-
T ss_pred             ------ecC-----------hhHHHHHHHHHHHHHhcCCCceE--EEECCc-CHHHHHHHHHhCCCCcEEEEeeHHhCC-
Confidence                  000           00123333333321     4677  457999 5999999999  999999999999999 


Q ss_pred             CHHHHHHHHHHH
Q 037779          260 DPVRRARAIVQA  271 (310)
Q Consensus       260 dp~~~~~~~~~~  271 (310)
                      ||.+.+++|++.
T Consensus       224 d~~~~~~~l~~~  235 (237)
T 3cu2_A          224 ELKTNLKVWKSS  235 (237)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHh
Confidence            999999998765

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=99.27  E-value=9.8e-12  Score=109.45  Aligned_cols=184  Identities=13%  Similarity=0.157  Sum_probs=116.5

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhh-cCcceEe--eccccchHHHHHHHHcCCCeeeecC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSS-VTIPVMA--KARIGHFVEAQILEAIGVDYVDESE  122 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~-~~lPv~~--kd~i~~~~~~~~~~~aGad~v~~~~  122 (310)
                      +.++.+ +.|++++ .+.. +. ...++       ++.++++|+. .+.|+..  +........++.+.++|||++..+.
T Consensus        23 ~~~~~~-~~~vd~i-e~g~-~~-~~~~G-------~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~   91 (218)
T 3jr2_A           23 AVASNV-ASYVDVI-EVGT-IL-AFAEG-------MKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSA   91 (218)
T ss_dssp             HHHHHH-GGGCSEE-EECH-HH-HHHHT-------THHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEET
T ss_pred             HHHHHh-cCCceEE-EeCc-HH-HHhcC-------HHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEec
Confidence            445554 5678887 3310 10 11233       6889999988 4666654  3221122356788899999998654


Q ss_pred             CCCh---hHHHHHHHhcCCCCcE-EeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchh
Q 037779          123 VLTP---ADEENHINKHNFRVPF-VCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDE  198 (310)
Q Consensus       123 ~~~~---~~~~~~~~~~~~~l~v-~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  198 (310)
                      ....   .++.+.+++++....+ +..+.|.+++..+.+.|+|++.+. ...++.                 .       
T Consensus        92 ~~~~~~~~~~~~~~~~~g~~~~~d~l~~~T~~~~~~~~~~g~d~v~~~-~~~~~~-----------------~-------  146 (218)
T 3jr2_A           92 AAHIATIAACKKVADELNGEIQIEIYGNWTMQDAKAWVDLGITQAIYH-RSRDAE-----------------L-------  146 (218)
T ss_dssp             TSCHHHHHHHHHHHHHHTCEEEEECCSSCCHHHHHHHHHTTCCEEEEE-CCHHHH-----------------H-------
T ss_pred             CCCHHHHHHHHHHHHHhCCccceeeeecCCHHHHHHHHHcCccceeee-eccccc-----------------c-------
Confidence            4222   3444555554432232 445678888888888899998763 111000                 0       


Q ss_pred             HHhhhccCCCcHHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          199 VFTFAKNIAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       199 ~~~~~~~~~~~~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                           .+.....+.++.+++.  .++|+  ++.||| +++++.+++++|||+++|||+|++++||.+.+ +|++.+++
T Consensus       147 -----~g~~~~~~~l~~i~~~~~~~~pi--~v~GGI-~~~~~~~~~~aGAd~vvvGsaI~~a~dp~~a~-~l~~~~~~  215 (218)
T 3jr2_A          147 -----AGIGWTTDDLDKMRQLSALGIEL--SITGGI-VPEDIYLFEGIKTKTFIAGRALAGAEGQQTAA-ALREQIDR  215 (218)
T ss_dssp             -----HTCCSCHHHHHHHHHHHHTTCEE--EEESSC-CGGGGGGGTTSCEEEEEESGGGSHHHHHHHHH-HHHHHHHH
T ss_pred             -----CCCcCCHHHHHHHHHHhCCCCCE--EEECCC-CHHHHHHHHHcCCCEEEEchhhcCCCCHHHHH-HHHHHHHh
Confidence                 0011122233334332  36788  457999 59999999999999999999999999999999 99888764

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=99.24  E-value=5.4e-10  Score=106.70  Aligned_cols=130  Identities=18%  Similarity=0.279  Sum_probs=88.8

Q ss_pred             hHHHHHHHHcCCCeeee-cCCCChh---HHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHH
Q 037779          104 FVEAQILEAIGVDYVDE-SEVLTPA---DEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAV  178 (310)
Q Consensus       104 ~~~~~~~~~aGad~v~~-~~~~~~~---~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~  178 (310)
                      .+.++.+.++|+|.|.. +....+.   +.++.+++. .++++++ .+.|.++++.+.++|+|+|.+. ... +++..  
T Consensus       146 ~e~~~~lveaGvdvIvldta~G~~~~~~e~I~~ik~~-~~i~Vi~g~V~t~e~A~~a~~aGAD~I~vG-~g~-Gs~~~--  220 (400)
T 3ffs_A          146 IERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSK-MNIDVIVGNVVTEEATKELIENGADGIKVG-IGP-GSICT--  220 (400)
T ss_dssp             CHHHHHHHHHTCSEEEECCSCCSBHHHHHHHHHHHTT-CCCEEEEEEECSHHHHHHHHHTTCSEEEEC-C----------
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCcccHHHHHHHHHhc-CCCeEEEeecCCHHHHHHHHHcCCCEEEEe-CCC-CcCcc--
Confidence            46788999999999874 2222333   444555543 3788876 7999999999999999999984 211 11100  


Q ss_pred             HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc---CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccc
Q 037779          179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGV  255 (310)
Q Consensus       179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~---~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai  255 (310)
                               .+.....          + .+.+.++..+.+.   .++||  |++|||.+++|+.+++++||++|++||+|
T Consensus       221 ---------tr~~~g~----------g-~p~~~al~~v~~~~~~~~IPV--IA~GGI~~~~di~kalalGAd~V~vGt~f  278 (400)
T 3ffs_A          221 ---------TRIVAGV----------G-VPQITAIEKCSSVASKFGIPI--IADGGIRYSGDIGKALAVGASSVMIGSIL  278 (400)
T ss_dssp             -----------CCSCB----------C-CCHHHHHHHHHHHHTTTTCCE--EEESCCCSHHHHHHHHTTTCSEEEECGGG
T ss_pred             ---------ccccccc----------c-hhHHHHHHHHHHHHHhcCCCE--EecCCCCCHHHHHHHHHcCCCEEEEChHH
Confidence                     0011000          0 1235566666542   47899  78999999999999999999999999999


Q ss_pred             ccCCC
Q 037779          256 FKSGD  260 (310)
Q Consensus       256 ~~~~d  260 (310)
                      +.++.
T Consensus       279 ~~t~E  283 (400)
T 3ffs_A          279 AGTEE  283 (400)
T ss_dssp             TTBTT
T ss_pred             hcCCC
Confidence            99653

>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*

Probab=99.23  E-value=1.1e-10  Score=106.15  Aligned_cols=178  Identities=17%  Similarity=0.149  Sum_probs=110.7

Q ss_pred             HHHHHHHHcCCcEEEecc-cccchh------------hh-cCCCCCCCChHHHHHHHhhcCcceEeeccc------cchH
Q 037779           46 EQARIAEEAGACAVMALE-RVPADI------------RA-QGGVARMSDPQLIKQIKSSVTIPVMAKARI------GHFV  105 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~~d~------------r~-~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i------~~~~  105 (310)
                      +.++.+.++ +|+| .+. |.. |+            +. ..|......++.++++|+.+++|+++....      +...
T Consensus        34 ~~~~~l~~~-aD~I-ElG~Pfs-dP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~~Pii~m~y~n~v~~~g~~~  110 (271)
T 1ujp_A           34 QAVEEVLPY-ADLL-EIGLPYS-DPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWGPER  110 (271)
T ss_dssp             HHHHHHGGG-CSSE-EEECCCC-C----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHHHHCHHH
T ss_pred             HHHHHHHhc-CCEE-EECCCCC-CcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcHHHHhhHHH
Confidence            678888998 9987 332 221 11            00 112211112567889998889999884322      2235


Q ss_pred             HHHHHHHcCCCeeeecCCC--ChhHHHHHHHhcCCC-CcEEeecCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHHH
Q 037779          106 EAQILEAIGVDYVDESEVL--TPADEENHINKHNFR-VPFVCGCRNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRHV  181 (310)
Q Consensus       106 ~~~~~~~aGad~v~~~~~~--~~~~~~~~~~~~~~~-l~v~~~v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~~  181 (310)
                      +++.+.++|+|+++..+..  +..++.+.+++++.. +.++....+.+.++...+.+..++... ..+.||.-       
T Consensus       111 f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~~~gl~~i~liap~s~~eri~~ia~~~~gfiy~vs~~G~TG~~-------  183 (271)
T 1ujp_A          111 FFGLFKQAGATGVILPDLPPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFVYAVSVTGVTGMR-------  183 (271)
T ss_dssp             HHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCSCEEEECC--------------
T ss_pred             HHHHHHHcCCCEEEecCCCHHHHHHHHHHHHHcCCceEEEeCCCCCHHHHHHHHHhCCCCEEEEecCcccCCC-------
Confidence            6778899999998865542  234556666666655 444445556665555555555554332 11233310       


Q ss_pred             HHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          182 RSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       182 ~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                                ..           ......++++.+++..++||  +++|||+|++++.++  .|||||+|||+|++.
T Consensus       184 ----------~~-----------~~~~~~~~v~~vr~~~~~Pv--~vGfGI~t~e~a~~~--~~ADgVIVGSAi~~~  235 (271)
T 1ujp_A          184 ----------ER-----------LPEEVKDLVRRIKARTALPV--AVGFGVSGKATAAQA--AVADGVVVGSALVRA  235 (271)
T ss_dssp             --------------------------CCHHHHHHHHTTCCSCE--EEESCCCSHHHHHHH--TTSSEEEECHHHHHH
T ss_pred             ----------CC-----------CCccHHHHHHHHHhhcCCCE--EEEcCCCCHHHHHHh--cCCCEEEEChHHhcc
Confidence                      00           01224678889988778999  679999999999996  999999999999985

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=99.16  E-value=1.2e-09  Score=103.03  Aligned_cols=179  Identities=15%  Similarity=0.170  Sum_probs=114.9

Q ss_pred             ccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc--chHHHHHHHHcCC
Q 037779           38 VIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG--HFVEAQILEAIGV  115 (310)
Q Consensus        38 ~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~--~~~~~~~~~~aGa  115 (310)
                      .|....++++|.++.++|.-.+  +       ..+      .+++.+.+..+.+..++.+.....  ..+.++.+.++|+
T Consensus        49 pM~~vte~~lA~A~a~~Gg~gv--i-------~~~------~s~ee~~~~i~~~~~~~~~~~g~~~~~~e~~~~a~~aGv  113 (361)
T 3r2g_A           49 NMDTITESNMANFMHSKGAMGA--L-------HRF------MTIEENIQEFKKCKGPVFVSVGCTENELQRAEALRDAGA  113 (361)
T ss_dssp             CSTTTCSHHHHHHHHHTTCEEB--C-------CSC------SCHHHHHHHHHTCCSCCBEEECSSHHHHHHHHHHHHTTC
T ss_pred             CCCCchHHHHHHHHHHcCCCEE--E-------eCC------CCHHHHHHHHhhcceEEEEEcCCCHHHHHHHHHHHHcCC
Confidence            3556677899999999997664  3       111      124444433333333333322221  3356788899999


Q ss_pred             Ceeeec--CCCC--hhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceec
Q 037779          116 DYVDES--EVLT--PADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRV  190 (310)
Q Consensus       116 d~v~~~--~~~~--~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~  190 (310)
                      |.|.++  ...+  ..+.++.+++..+++++++ .+.|+++++.+.+.|+|+|.+....  +....+           +.
T Consensus       114 dvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGaD~I~Vg~g~--G~~~~t-----------r~  180 (361)
T 3r2g_A          114 DFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKAGIGG--GSVCST-----------RI  180 (361)
T ss_dssp             CEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTTCSEEEECCSS--SSCHHH-----------HH
T ss_pred             CEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCCCEEEEcCCC--CcCccc-----------cc
Confidence            987642  2211  2245666666545788999 5999999999999999999984211  111000           00


Q ss_pred             ccccCchhHHhhhccCC-CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          191 LRNMDDDEVFTFAKNIA-APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       191 l~~~~~d~~~~~~~~~~-~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                      .            .+.. +..+.+..+.+... ||  |+.|||.++.|+.+++++|||+|++||.|+.++
T Consensus       181 ~------------~g~g~p~l~aI~~~~~~~~-PV--IAdGGI~~~~di~kALa~GAd~V~iGr~f~~t~  235 (361)
T 3r2g_A          181 K------------TGFGVPMLTCIQDCSRADR-SI--VADGGIKTSGDIVKALAFGADFVMIGGMLAGSA  235 (361)
T ss_dssp             H------------HCCCCCHHHHHHHHTTSSS-EE--EEESCCCSHHHHHHHHHTTCSEEEESGGGTTBT
T ss_pred             c------------CCccHHHHHHHHHHHHhCC-CE--EEECCCCCHHHHHHHHHcCCCEEEEChHHhCCc
Confidence            0            0111 13445555554333 88  678999999999999999999999999999875

>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1

Probab=99.15  E-value=3.9e-10  Score=100.58  Aligned_cols=174  Identities=20%  Similarity=0.240  Sum_probs=108.3

Q ss_pred             CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeecC
Q 037779           43 VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESE  122 (310)
Q Consensus        43 ~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~  122 (310)
                      .+.+.++.+.++|+|+|...      .  ..|......++.++++|+ +++|++.-....  ..    ..+|+|.++.++
T Consensus        21 ~t~~~~~~l~~~GaD~ielG------~--S~Gvt~~~~~~~v~~ir~-~~~Pivlm~y~~--n~----i~~G~dg~iiPd   85 (240)
T 1viz_A           21 LPDEQLEILCESGTDAVIIG------G--SDGVTEDNVLRMMSKVRR-FLVPCVLEVSAI--EA----IVPGFDLYFIPS   85 (240)
T ss_dssp             CCHHHHHHHHTSCCSEEEEC------C------CHHHHHHHHHHHTT-SSSCEEEECSCG--GG----CCSCCSEEEEEE
T ss_pred             ccHHHHHHHHHcCCCEEEEC------C--CCCCCHHHHHHHHHHhhC-cCCCEEEecCcc--cc----ccCCCCEEEEcc
Confidence            34688999999999998322      1  122222223778899998 899998754431  11    167999998665


Q ss_pred             CCCh--hHH-----HHHHHhcC-----CCCcE----EeecC-------------CHHHHHHHHHhCC----CEEEEecCC
Q 037779          123 VLTP--ADE-----ENHINKHN-----FRVPF----VCGCR-------------NLGESLRRIREGA----AMIRTKGEA  169 (310)
Q Consensus       123 ~~~~--~~~-----~~~~~~~~-----~~l~v----~~~v~-------------t~~ea~~a~~~Ga----d~I~v~g~~  169 (310)
                      ..+.  .++     ...+++++     ..+..    ++...             +++.+.+..+.|.    .++...+ .
T Consensus        86 Lp~ee~~~~~~g~~~~a~~~~g~~~~~l~~i~~gy~l~~P~~~~~rl~~~d~~~~~~~~~~~a~~g~~~~~~~VYl~s-~  164 (240)
T 1viz_A           86 VLNSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLPIFYLEY-S  164 (240)
T ss_dssp             ETTBSSGGGTTHHHHHHHHHCHHHHHHSCEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCSEEEEEC-T
T ss_pred             cCcccChhhhcchhHHHHHHcCCCCcceeeeecccEEECCCCceEEeeccCCCCCHHHHHHHHHhCcccCCCEEEEeC-C
Confidence            4321  233     34555544     44332    32222             2334444443332    3333322 0


Q ss_pred             CCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCE
Q 037779          170 GTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDG  248 (310)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~Gadg  248 (310)
                                                         +.....++++.+++.. ++|+  +++|||+|+++++++++ |||+
T Consensus       165 -----------------------------------G~~~~~~~i~~i~~~~~~~Pv--~vGgGI~t~e~a~~~~~-gAd~  206 (240)
T 1viz_A          165 -----------------------------------GVLGDIEAVKKTKAVLETSTL--FYGGGIKDAETAKQYAE-HADV  206 (240)
T ss_dssp             -----------------------------------TSCCCHHHHHHHHHTCSSSEE--EEESSCCSHHHHHHHHT-TCSE
T ss_pred             -----------------------------------CccChHHHHHHHHHhcCCCCE--EEEeccCCHHHHHHHHh-CCCE
Confidence                                               1133578889998877 8999  67999999999999999 9999


Q ss_pred             EEEccccccCCCHHHHHHHHHHHHH
Q 037779          249 VFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       249 V~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                      |+|||++++  +|...+++ .++++
T Consensus       207 VIVGSa~v~--~~~~~~~~-v~~~~  228 (240)
T 1viz_A          207 IVVGNAVYE--DFDRALKT-VAAVK  228 (240)
T ss_dssp             EEECTHHHH--CHHHHHTH-HHHHH
T ss_pred             EEEChHHHh--CHHHHHHH-HHHHH
Confidence            999999998  45435555 44444

>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}

Probab=99.15  E-value=4e-10  Score=101.09  Aligned_cols=177  Identities=17%  Similarity=0.144  Sum_probs=112.1

Q ss_pred             HHHHHHHHcCCcEEEecc-ccc-------chh----hhc-CCCCCCCChHHHHHHHhhcCcceEeecccc------chHH
Q 037779           46 EQARIAEEAGACAVMALE-RVP-------ADI----RAQ-GGVARMSDPQLIKQIKSSVTIPVMAKARIG------HFVE  106 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~-------~d~----r~~-~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~------~~~~  106 (310)
                      +.++.+.++|||.| -|. |..       +-.    |+. +|.....-++.++++|..  +|++.....+      ...+
T Consensus        32 ~~~~~l~~~GaD~i-ElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~--~Pivlm~Y~N~i~~~G~e~F  108 (252)
T 3tha_A           32 AFLQRLDQSPIDIL-ELGVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKTK--KALVFMVYYNLIFSYGLEKF  108 (252)
T ss_dssp             HHHHTGGGSSCSEE-EEECCCSCCCSCCCHHHHHHHHHHHTTCCHHHHHHHHHHCCCS--SEEEEECCHHHHHHHCHHHH
T ss_pred             HHHHHHHHcCCCEE-EECCCCCCCCCCcHHHHHHHHHHHHCCCCHHHHHHHHHHHhcC--CCEEEEeccCHHHHhhHHHH
Confidence            67889999999987 443 211       111    111 133222224445555533  7987764433      2346


Q ss_pred             HHHHHHcCCCeeeecCCCChh---HHHHHHHhcCCCCcEEeecCC-HHHHHHHHHhCCCEEEEecC-CCCCchHHHHHHH
Q 037779          107 AQILEAIGVDYVDESEVLTPA---DEENHINKHNFRVPFVCGCRN-LGESLRRIREGAAMIRTKGE-AGTGNIVEAVRHV  181 (310)
Q Consensus       107 ~~~~~~aGad~v~~~~~~~~~---~~~~~~~~~~~~l~v~~~v~t-~~ea~~a~~~Gad~I~v~g~-~~~~~~~~~~~~~  181 (310)
                      ++.+.++|+|++++++. +++   ++.+.+++++.....++..+| .+.+++..+.+..+|..... +.||.-.      
T Consensus       109 ~~~~~~aGvdG~IipDL-P~eE~~~~~~~~~~~Gl~~I~lvaP~t~~eRi~~ia~~a~gFiY~Vs~~GvTG~~~------  181 (252)
T 3tha_A          109 VKKAKSLGICALIVPEL-SFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKHAKGFIYLLASIGITGTKS------  181 (252)
T ss_dssp             HHHHHHTTEEEEECTTC-CGGGCHHHHHHHHHTTCEECEEEETTSCHHHHHHHHTTCCSCEEEECCSCSSSCSH------
T ss_pred             HHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHhCCCeEEEEecCCCCCccc------
Confidence            78899999999997765 433   455556667776666566555 55566666666677754422 2233100      


Q ss_pred             HHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          182 RSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       182 ~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                                      ..      .....++++.+++..++|+  ++++||++++++.++.+ +||||+|||+|++
T Consensus       182 ----------------~~------~~~~~~~v~~vr~~~~~Pv--~vGfGIst~e~a~~~~~-~ADGVIVGSAiVk  232 (252)
T 3tha_A          182 ----------------VE------EAILQDKVKEIRSFTNLPI--FVGFGIQNNQDVKRMRK-VADGVIVGTSIVK  232 (252)
T ss_dssp             ----------------HH------HHHHHHHHHHHHTTCCSCE--EEESSCCSHHHHHHHTT-TSSEEEECHHHHH
T ss_pred             ----------------CC------CHHHHHHHHHHHHhcCCcE--EEEcCcCCHHHHHHHHh-cCCEEEECHHHHH
Confidence                            00      0112567888888778999  56999999999999876 5999999999987

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=99.14  E-value=2.7e-10  Score=107.07  Aligned_cols=48  Identities=17%  Similarity=0.205  Sum_probs=40.2

Q ss_pred             cHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          209 PYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       209 ~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      .++.++.+.+.. ++||  |++|||.+++|+.+++.+|||+|++|++++..
T Consensus       238 ~~~~l~~v~~~~~~ipv--ia~GGI~~~~d~~k~l~~GAd~V~iG~~~l~~  286 (349)
T 1p0k_A          238 TAASLAEIRSEFPASTM--IASGGLQDALDVAKAIALGASCTGMAGHFLKA  286 (349)
T ss_dssp             HHHHHHHHHHHCTTSEE--EEESSCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred             HHHHHHHHHHhcCCCeE--EEECCCCCHHHHHHHHHcCCCEEEEcHHHHHH
Confidence            345556665543 7899  67999999999999999999999999999985

>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9

Probab=99.08  E-value=8e-09  Score=93.20  Aligned_cols=208  Identities=16%  Similarity=0.211  Sum_probs=128.7

Q ss_pred             HHHHHHHHcCCcEEEecc--cccchhhh-cCCCCCCCC-hHHHH----HHHhhc-CcceEeeccc-c---c-hHHHHHHH
Q 037779           46 EQARIAEEAGACAVMALE--RVPADIRA-QGGVARMSD-PQLIK----QIKSSV-TIPVMAKARI-G---H-FVEAQILE  111 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~--~~~~d~r~-~~G~~~~~~-~~~i~----~i~~~~-~lPv~~kd~i-~---~-~~~~~~~~  111 (310)
                      =.|+..+.+|+|.|..+|  +..-..|. ..|-.-..| .+.+.    ++-..+ ++||+....- +   + ....+.+.
T Consensus        39 lsAk~~e~gGaDlii~ynsGrfR~~G~~slag~lpygnaN~iv~e~~~evlp~v~~iPV~Agv~~~DP~~~~g~~Le~lk  118 (286)
T 2p10_A           39 LSAKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLAYGNANQIVVDMAREVLPVVRHTPVLAGVNGTDPFMVMSTFLRELK  118 (286)
T ss_dssp             HHHHHHHHTTCSEEEECHHHHHHHTTCCGGGGGBTEEEHHHHHHHHHHHHGGGCSSSCEEEEECTTCTTCCHHHHHHHHH
T ss_pred             hhhHHHHhCCCCEEEEeccchhhhcCccchhhhccccCHHHHHHHHHHhhhccCCCCCEEEEECCcCCCcCHHHHHHHHH
Confidence            458999999999997776  11100010 001000111 22233    333333 7999987211 1   2 13447888


Q ss_pred             HcCCCeeeecC----------------CCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEecC-CCCCc
Q 037779          112 AIGVDYVDESE----------------VLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTKGE-AGTGN  173 (310)
Q Consensus       112 ~aGad~v~~~~----------------~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~-~~~~~  173 (310)
                      ++|+.+++.+.                .+...+..+.+++ +..++..++.+.|+++++...++|+|+|.++.+ ..++.
T Consensus       119 ~~Gf~Gv~N~ptvglidG~fr~~LEE~gm~~~~eve~I~~A~~~gL~Ti~~v~~~eeA~amA~agpDiI~~h~glT~ggl  198 (286)
T 2p10_A          119 EIGFAGVQNFPTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKLDLLTTPYVFSPEDAVAMAKAGADILVCHMGLTTGGA  198 (286)
T ss_dssp             HHTCCEEEECSCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHTTCEECCEECSHHHHHHHHHHTCSEEEEECSCC----
T ss_pred             HhCCceEEECCCcccccchhhhhHhhcCCCHHHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHcCCCEEEECCCCCCCCc
Confidence            99999997432                2345566666666 667899999999999999999999999999833 11111


Q ss_pred             hHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHc--CCCEEE
Q 037779          174 IVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQL--GCDGVF  250 (310)
Q Consensus       174 ~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~--GadgV~  250 (310)
                      +-          .+    ...+.+.    +  ...-.++.+.+++. .++.|+ ..+|||.+++|++.+++.  |++|+.
T Consensus       199 IG----------~~----~avs~~~----~--~e~i~~i~~a~~~vnpdvivL-c~gGpIstpeDv~~~l~~t~G~~G~~  257 (286)
T 2p10_A          199 IG----------AR----SGKSMDD----C--VSLINECIEAARTIRDDIIIL-SHGGPIANPEDARFILDSCQGCHGFY  257 (286)
T ss_dssp             -------------------CCCHHH----H--HHHHHHHHHHHHHHCSCCEEE-EESTTCCSHHHHHHHHHHCTTCCEEE
T ss_pred             cc----------CC----CcccHHH----h--HHHHHHHHHHHHHhCCCcEEE-ecCCCCCCHHHHHHHHhcCCCccEEE
Confidence            10          00    0001000    0  00012233333443 345443 456699999999999998  999999


Q ss_pred             EccccccCCCHHHHHHHHHHHHHcC
Q 037779          251 VGSGVFKSGDPVRRARAIVQAVTNY  275 (310)
Q Consensus       251 VGsai~~~~dp~~~~~~~~~~~~~~  275 (310)
                      .+|++.+.+ |++.++++.+.+++.
T Consensus       258 gASsier~p-~e~ai~~~~~~fk~~  281 (286)
T 2p10_A          258 GASSMERLP-AEEAIRSQTLAFKAI  281 (286)
T ss_dssp             ESHHHHHHH-HHHHHHHHHHHHHTC
T ss_pred             eehhhhcCC-HHHHHHHHHHHHHhc
Confidence            999999998 999999998888764

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=99.06  E-value=1.2e-09  Score=102.83  Aligned_cols=157  Identities=20%  Similarity=0.233  Sum_probs=99.8

Q ss_pred             HHHHHHHHcCCcEEEecc-cccch--hhhcCCCCCCCChHHHH----HHHhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779           46 EQARIAEEAGACAVMALE-RVPAD--IRAQGGVARMSDPQLIK----QIKSSVTIPVMAKARIGHFVEAQILEAIGVDYV  118 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~~d--~r~~~G~~~~~~~~~i~----~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v  118 (310)
                      +.++.+.++|+++| ++| .+|..  .+...|+..+..++.+.    ++++.+++||++|.+++..+             
T Consensus        74 ~aA~~a~~~G~D~I-eIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~g~~~-------------  139 (350)
T 3b0p_A           74 EAARIGEAFGYDEI-NLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRLGLEG-------------  139 (350)
T ss_dssp             HHHHHHHHTTCSEE-EEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEESCBTT-------------
T ss_pred             HHHHHHHHcCCCEE-EECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEecCcCc-------------
Confidence            56888888999998 787 44432  22223454556666554    55666789999987765211             


Q ss_pred             eecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCC-CchHHHHHHHHHhhcceecccccCch
Q 037779          119 DESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGT-GNIVEAVRHVRSVMGDIRVLRNMDDD  197 (310)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d  197 (310)
                          ..+..+.                   .+.++.+.+.|+|+|.+++.... +..                 ..... 
T Consensus       140 ----~~~~~~~-------------------~~~a~~l~~aG~d~I~V~~r~~~~g~~-----------------g~~~~-  178 (350)
T 3b0p_A          140 ----KETYRGL-------------------AQSVEAMAEAGVKVFVVHARSALLALS-----------------TKANR-  178 (350)
T ss_dssp             ----CCCHHHH-------------------HHHHHHHHHTTCCEEEEECSCBC---------------------------
T ss_pred             ----cccHHHH-------------------HHHHHHHHHcCCCEEEEecCchhcccC-----------------ccccc-
Confidence                0011111                   12344556778888888754211 000                 00000 


Q ss_pred             hHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHH
Q 037779          198 EVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       198 ~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~  266 (310)
                            ......+++++.+++.. ++||  |++|||.|++++.++++ |||+|++|++++..++....++
T Consensus       179 ------~~~~~~~~~i~~ik~~~~~iPV--ianGgI~s~eda~~~l~-GaD~V~iGRa~l~~P~l~~~i~  239 (350)
T 3b0p_A          179 ------EIPPLRHDWVHRLKGDFPQLTF--VTNGGIRSLEEALFHLK-RVDGVMLGRAVYEDPFVLEEAD  239 (350)
T ss_dssp             -------CCCCCHHHHHHHHHHCTTSEE--EEESSCCSHHHHHHHHT-TSSEEEECHHHHHCGGGGTTHH
T ss_pred             ------CCCcccHHHHHHHHHhCCCCeE--EEECCcCCHHHHHHHHh-CCCEEEECHHHHhCcHHHHHHH
Confidence                  00123578888888876 8999  67999999999999998 9999999999998776554443

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=99.06  E-value=5.9e-09  Score=97.53  Aligned_cols=180  Identities=16%  Similarity=0.144  Sum_probs=112.9

Q ss_pred             cccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc--chHHHHHHHHcC--
Q 037779           39 IMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG--HFVEAQILEAIG--  114 (310)
Q Consensus        39 i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~--~~~~~~~~~~aG--  114 (310)
                      +....+.++++.+.+.|.-.+...    .+. ..       ..+.++++++ .++|+.+.....  ..+.++.+.++|  
T Consensus        54 mag~s~~~la~a~~~~gg~g~~~~----~~~-~~-------~~~~i~~~~~-~g~~v~v~~g~~~~~~~~a~~~~~~g~~  120 (336)
T 1ypf_A           54 MQTIIDERIATYLAENNYFYIMHR----FQP-EK-------RISFIRDMQS-RGLIASISVGVKEDEYEFVQQLAAEHLT  120 (336)
T ss_dssp             STTTCCHHHHHHHHHTTCCCCCCC----SSG-GG-------HHHHHHHHHH-TTCCCEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             CCCCChHHHHHHHHhCCCEEEecC----CCC-HH-------HHHHHHHHHh-cCCeEEEeCCCCHHHHHHHHHHHhcCCC
Confidence            344556788887666654433111    111 10       1334555553 356777663221  224456677889  


Q ss_pred             CCeeeec--CCC--ChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhccee
Q 037779          115 VDYVDES--EVL--TPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIR  189 (310)
Q Consensus       115 ad~v~~~--~~~--~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~  189 (310)
                      ++.+...  ...  ...+.++.+++...+.+++.+ +.+.++++++.+.|+|.|.+.+..+..  .              
T Consensus       121 ~~~i~i~~~~G~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aGad~Ivvs~hgG~~--~--------------  184 (336)
T 1ypf_A          121 PEYITIDIAHGHSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAGADATKVGIGPGKV--C--------------  184 (336)
T ss_dssp             CSEEEEECSSCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTT--C--------------
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEecCCCce--e--------------
Confidence            8887532  111  123556666664445667777 889999999999999999885332110  0              


Q ss_pred             cccccCchhHHhhhccCC-C--cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          190 VLRNMDDDEVFTFAKNIA-A--PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       190 ~l~~~~~d~~~~~~~~~~-~--~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                        .+..   .    .... +  +++.+..+.+..++||  |++|||.++.|+.+++.+||++|++|++++.+
T Consensus       185 --~~~~---~----~~~g~~g~~~~~l~~v~~~~~ipV--Ia~GGI~~g~Dv~kalalGAdaV~iGr~~l~t  245 (336)
T 1ypf_A          185 --ITKI---K----TGFGTGGWQLAALRWCAKAASKPI--IADGGIRTNGDVAKSIRFGATMVMIGSLFAGH  245 (336)
T ss_dssp             --HHHH---H----HSCSSTTCHHHHHHHHHHTCSSCE--EEESCCCSTHHHHHHHHTTCSEEEESGGGTTC
T ss_pred             --eccc---c----cCcCCchhHHHHHHHHHHHcCCcE--EEeCCCCCHHHHHHHHHcCCCEEEeChhhhcc
Confidence              0000   0    0111 1  4677888887778999  67999999999999999999999999999953

>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*

Probab=99.03  E-value=3.8e-10  Score=100.25  Aligned_cols=162  Identities=19%  Similarity=0.232  Sum_probs=99.8

Q ss_pred             CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeecC
Q 037779           43 VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESE  122 (310)
Q Consensus        43 ~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~  122 (310)
                      .+.+.++.+.++|+|.|...      .  ..|.....-++.++++|+ +++|++.-....  ..    .++|+|++++++
T Consensus        21 ~t~~~~~~l~~~GaD~IelG------~--S~g~t~~~~~~~v~~ir~-~~~Pivl~~y~~--n~----i~~gvDg~iipd   85 (234)
T 2f6u_A           21 NTDEIIKAVADSGTDAVMIS------G--TQNVTYEKARTLIEKVSQ-YGLPIVVEPSDP--SN----VVYDVDYLFVPT   85 (234)
T ss_dssp             CCHHHHHHHHTTTCSEEEEC------C--CTTCCHHHHHHHHHHHTT-SCCCEEECCSSC--CC----CCCCSSEEEEEE
T ss_pred             ccHHHHHHHHHcCCCEEEEC------C--CCCCCHHHHHHHHHHhcC-CCCCEEEecCCc--ch----hhcCCCEEEEcc
Confidence            34578999999999998332      1  123222223667888888 899998754441  11    168999998664


Q ss_pred             CCC--hhHHH-----HHH-------HhcC-----CCCcE----EeecC-------------CHHHHHHHHHhCC-----C
Q 037779          123 VLT--PADEE-----NHI-------NKHN-----FRVPF----VCGCR-------------NLGESLRRIREGA-----A  161 (310)
Q Consensus       123 ~~~--~~~~~-----~~~-------~~~~-----~~l~v----~~~v~-------------t~~ea~~a~~~Ga-----d  161 (310)
                      .++  ..++.     +.+       ++++     ..+..    ++...             +++.++...+.|.     .
T Consensus        86 Lp~ee~~~~~~g~~~~~~~~~~~~~~~~g~~~~~l~~I~~gYil~~P~~~~~rl~~g~~~~~~e~~~~~a~~g~~~l~~~  165 (234)
T 2f6u_A           86 VLNSADGDWITGKHAQWVRMHYENLQKFTEIIESEFIQIEGYIVLNPDSAVARVTKALCNIDKELAASYALVGEKLFNLP  165 (234)
T ss_dssp             ETTBSBGGGTTHHHHHHHHTTGGGHHHHHHHHHSTTEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCCS
T ss_pred             cCCCCCHHHHhhhHHHHHHhhhhhHHHcCCcccceeeeecceEEECCCCceEEeecCCCCCCHHHHHHHHHhhhhhcCCC
Confidence            432  12222     222       2233     33222    22221             2222333333333     3


Q ss_pred             EEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHH
Q 037779          162 MIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAM  240 (310)
Q Consensus       162 ~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~  240 (310)
                      +|...+                           .         +.....++++.+++.. ++|+  +++|||+|++++++
T Consensus       166 ~Vyl~~---------------------------~---------G~~~~~~~i~~i~~~~~~~Pv--~vGgGI~s~e~a~~  207 (234)
T 2f6u_A          166 IIYIEY---------------------------S---------GTYGNPELVAEVKKVLDKARL--FYGGGIDSREKARE  207 (234)
T ss_dssp             EEEEEC---------------------------T---------TSCCCHHHHHHHHHHCSSSEE--EEESCCCSHHHHHH
T ss_pred             EEEEeC---------------------------C---------CCcchHHHHHHHHHhCCCCCE--EEEecCCCHHHHHH
Confidence            333221                           0         1233678889998877 8999  67999999999999


Q ss_pred             HHHcCCCEEEEccccccC
Q 037779          241 MMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       241 ~~~~GadgV~VGsai~~~  258 (310)
                      +++ |||+|+|||++++.
T Consensus       208 ~~~-gAd~VIVGSa~v~~  224 (234)
T 2f6u_A          208 MLR-YADTIIVGNVIYEK  224 (234)
T ss_dssp             HHH-HSSEEEECHHHHHH
T ss_pred             HHh-CCCEEEEChHHHhC
Confidence            999 99999999999984

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=99.02  E-value=1.3e-08  Score=92.00  Aligned_cols=178  Identities=20%  Similarity=0.237  Sum_probs=107.4

Q ss_pred             cCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeec--cc---c------chHHHH
Q 037779           41 DVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKA--RI---G------HFVEAQ  108 (310)
Q Consensus        41 ~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd--~i---~------~~~~~~  108 (310)
                      ...++ +.++.+.+.|++++ .++                 +..++... ..+.+++++.  ..   +      ....++
T Consensus        39 ~~~di~~~~~~a~~~~~~av-~v~-----------------~~~v~~~~-~~~~~liv~~~~~~~~~g~~~~~~~~~~ve   99 (263)
T 1w8s_A           39 DSADPEYILRLARDAGFDGV-VFQ-----------------RGIAEKYY-DGSVPLILKLNGKTTLYNGEPVSVANCSVE   99 (263)
T ss_dssp             GGGCHHHHHHHHHHHTCSEE-EEC-----------------HHHHHHHC-CSSSCEEEECEECCTTCCSSCCCEESSCHH
T ss_pred             chhhHHHHHHHHHhhCCCEE-EEC-----------------HHHHHHhh-cCCCcEEEEEeCCCCcCCCCccchHHHHHH
Confidence            34444 67999999999998 331                 22333333 3345544431  11   1      113567


Q ss_pred             HHHHcCCCeeeecC---CCChhHHHHHHHh-----cCCCCcEEeecC----------CHHHH----HHHHHhCCCEEEEe
Q 037779          109 ILEAIGVDYVDESE---VLTPADEENHINK-----HNFRVPFVCGCR----------NLGES----LRRIREGAAMIRTK  166 (310)
Q Consensus       109 ~~~~aGad~v~~~~---~~~~~~~~~~~~~-----~~~~l~v~~~v~----------t~~ea----~~a~~~Gad~I~v~  166 (310)
                      .+.+.||+.|....   .....+..+.+.+     +..++++++.+.          +.++.    +.+.+.|+|||++.
T Consensus       100 ~Ai~~Ga~~v~~~~nig~~~~~~~~~~~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~~~i~~a~~~a~~~GAD~vkt~  179 (263)
T 1w8s_A          100 EAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGADAMKIK  179 (263)
T ss_dssp             HHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEEE
T ss_pred             HHHHCCCCEEEEEEecCCcCHHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCccccCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence            78889999986221   1122222222211     223566666542          34433    34567899999985


Q ss_pred             cCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCC-CEEEEccCCCC--CHHHHHHHH-
Q 037779          167 GEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRL-PVVHFAAGGVA--TPADAAMMM-  242 (310)
Q Consensus       167 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~i-PVv~ia~GGI~--t~~di~~~~-  242 (310)
                       .  ++                                    ..+.++.+.+..+. ||  +++|||+  +.+++.+.+ 
T Consensus       180 -~--~~------------------------------------~~e~~~~~~~~~~~~pV--~asGGi~~~~~~~~l~~i~  218 (263)
T 1w8s_A          180 -Y--TG------------------------------------DPKTFSWAVKVAGKVPV--LMSGGPKTKTEEDFLKQVE  218 (263)
T ss_dssp             -C--CS------------------------------------SHHHHHHHHHHTTTSCE--EEECCSCCSSHHHHHHHHH
T ss_pred             -C--CC------------------------------------CHHHHHHHHHhCCCCeE--EEEeCCCCCCHHHHHHHHH
Confidence             1  11                                    22344555554455 98  4579998  777655444 


Q ss_pred             ---HcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCCh
Q 037779          243 ---QLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDP  278 (310)
Q Consensus       243 ---~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~  278 (310)
                         ++||+|+.+|++|++++||.++++++.+.++....+
T Consensus       219 ~~~~aGA~GvsvgraI~~~~dp~~~~~~l~~~v~~~~~~  257 (263)
T 1w8s_A          219 GVLEAGALGIAVGRNVWQRRDALKFARALAELVYGGKKL  257 (263)
T ss_dssp             HHHHTTCCEEEESHHHHTSTTHHHHHHHHHHHHC-----
T ss_pred             HHHHcCCeEEEEehhhcCCcCHHHHHHHHHHHHhcCCCH
Confidence               899999999999999999999999999999865544

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.00  E-value=8.8e-09  Score=101.08  Aligned_cols=129  Identities=18%  Similarity=0.181  Sum_probs=90.1

Q ss_pred             hHHHHHHHHcCCCeeeec-CCCChh---HHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEecCCCCCchHHHH
Q 037779          104 FVEAQILEAIGVDYVDES-EVLTPA---DEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAV  178 (310)
Q Consensus       104 ~~~~~~~~~aGad~v~~~-~~~~~~---~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~  178 (310)
                      .+.++.+.++|+|.|.+. ....+.   +.++.+++..+++++++. +.|.++++.+.++|+|+|.+....++...-   
T Consensus       231 ~~~a~~l~~aG~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~vg~g~Gs~~~t---  307 (490)
T 4avf_A          231 GERVAALVAAGVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEAGADAVKVGIGPGSICTT---  307 (490)
T ss_dssp             HHHHHHHHHTTCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHH---
T ss_pred             HHHHHHHhhcccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHcCCCEEEECCCCCcCCCc---
Confidence            467788889999998732 222233   566666665557777775 899999999999999999984211111000   


Q ss_pred             HHHHHhhcceecccccCchhHHhhhccC-CCcHHHHHHHHhc---CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccc
Q 037779          179 RHVRSVMGDIRVLRNMDDDEVFTFAKNI-AAPYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG  254 (310)
Q Consensus       179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~-~~~~~l~~~i~~~---~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsa  254 (310)
                                +...            +. .+.++.+..+.+.   .++||  |++|||.+++|+.+++++||++|++||+
T Consensus       308 ----------~~~~------------g~g~p~~~~l~~v~~~~~~~~iPV--Ia~GGI~~~~di~kal~~GAd~V~vGs~  363 (490)
T 4avf_A          308 ----------RIVA------------GVGVPQISAIANVAAALEGTGVPL--IADGGIRFSGDLAKAMVAGAYCVMMGSM  363 (490)
T ss_dssp             ----------HHHT------------CBCCCHHHHHHHHHHHHTTTTCCE--EEESCCCSHHHHHHHHHHTCSEEEECTT
T ss_pred             ----------cccC------------CCCccHHHHHHHHHHHhccCCCcE--EEeCCCCCHHHHHHHHHcCCCeeeecHH
Confidence                      0000            11 1235555555552   36899  7899999999999999999999999999


Q ss_pred             cccCC
Q 037779          255 VFKSG  259 (310)
Q Consensus       255 i~~~~  259 (310)
                      |+.++
T Consensus       364 ~~~~~  368 (490)
T 4avf_A          364 FAGTE  368 (490)
T ss_dssp             TTTBT
T ss_pred             HhcCC
Confidence            99865

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1

Probab=98.93  E-value=8.2e-09  Score=95.79  Aligned_cols=146  Identities=22%  Similarity=0.321  Sum_probs=94.8

Q ss_pred             HHHHHHHHcCCcEEEecc-cccch--hhhcCCCCCCCChHHH----HHHHhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779           46 EQARIAEEAGACAVMALE-RVPAD--IRAQGGVARMSDPQLI----KQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYV  118 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~~d--~r~~~G~~~~~~~~~i----~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v  118 (310)
                      +.|+.+.++ +++| ++| .+|..  .+...|+..++.++.+    +.+++.+++||.+|.+.+..              
T Consensus        75 ~aa~~a~~~-~d~I-ein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~G~~--------------  138 (318)
T 1vhn_A           75 EAARILSEK-YKWI-DLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWE--------------  138 (318)
T ss_dssp             HHHHHHTTT-CSEE-EEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESCSS--------------
T ss_pred             HHHHHHHHh-CCEE-EEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEEEecCCCC--------------
Confidence            467888888 9998 787 44432  2222344455556654    55666778999999765420              


Q ss_pred             eecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchh
Q 037779          119 DESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDE  198 (310)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~  198 (310)
                         .. +                      +.+.++.+.+.|+|+|.+++......                    ..   
T Consensus       139 ---~~-~----------------------~~~~a~~l~~~G~d~i~v~g~~~~~~--------------------~~---  169 (318)
T 1vhn_A          139 ---KN-E----------------------VEEIYRILVEEGVDEVFIHTRTVVQS--------------------FT---  169 (318)
T ss_dssp             ---SC-C----------------------HHHHHHHHHHTTCCEEEEESSCTTTT--------------------TS---
T ss_pred             ---hH-H----------------------HHHHHHHHHHhCCCEEEEcCCCcccc--------------------CC---
Confidence               00 0                      01234555667888887774321100                    00   


Q ss_pred             HHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHHHH
Q 037779          199 VFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVRRARA  267 (310)
Q Consensus       199 ~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~dp~~~~~~  267 (310)
                             -...+++++.+++  ++||  |++|||.|++++.++++ .|||+|++|++++..++....++.
T Consensus       170 -------~~~~~~~i~~i~~--~ipV--i~~GgI~s~~da~~~l~~~gad~V~iGR~~l~~P~l~~~~~~  228 (318)
T 1vhn_A          170 -------GRAEWKALSVLEK--RIPT--FVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKD  228 (318)
T ss_dssp             -------SCCCGGGGGGSCC--SSCE--EEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHHHHHHH
T ss_pred             -------CCcCHHHHHHHHc--CCeE--EEECCcCCHHHHHHHHHcCCCCEEEECHHHHhCcchHHHHHH
Confidence                   0123455555655  7899  67999999999999998 799999999999998887665544

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=98.93  E-value=2.1e-08  Score=98.80  Aligned_cols=182  Identities=15%  Similarity=0.178  Sum_probs=112.3

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhh-------cCcceEeecccc--chHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSS-------VTIPVMAKARIG--HFVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~-------~~lPv~~kd~i~--~~~~~~~~~~aGad  116 (310)
                      +..+.+.+.+...+.+++    +....-|-  ....+.++.+...       ..+++.+.....  ..+.++.+.++|+|
T Consensus       197 eal~~m~~~~i~~lpVVD----e~g~l~Gi--IT~~Dil~~~~~p~a~~D~~~rl~V~aavg~~~d~~era~aLveaGvd  270 (511)
T 3usb_A          197 EAEKILQKYKIEKLPLVD----NNGVLQGL--ITIKDIEKVIEFPNSAKDKQGRLLVGAAVGVTADAMTRIDALVKASVD  270 (511)
T ss_dssp             HHHHHHHHHTCSEEEEEC----TTSBEEEE--EEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHcCCCEEEEEe----CCCCEeee--ccHHHHHHhhhcccchhhhccceeeeeeeeeccchHHHHHHHHhhccc
Confidence            678888888888764441    11111122  2223455555431       123444333222  34667788999999


Q ss_pred             eeeec-CCC---ChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecc
Q 037779          117 YVDES-EVL---TPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVL  191 (310)
Q Consensus       117 ~v~~~-~~~---~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l  191 (310)
                      .+.+. ...   ...+.++.+++..+++++++ ++.|.++++.+.+.|+|+|.+. ...+. +...           +..
T Consensus       271 ~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~aGad~i~vg-~g~gs-i~~~-----------~~~  337 (511)
T 3usb_A          271 AIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVG-IGPGS-ICTT-----------RVV  337 (511)
T ss_dssp             EEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEEC-SSCST-TCCH-----------HHH
T ss_pred             eEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHhCCCEEEEC-CCCcc-cccc-----------ccc
Confidence            98742 221   12356666666555676666 7999999999999999999884 21111 1000           000


Q ss_pred             cccCchhHHhhhccC-CCcHHHHHHHHh---cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779          192 RNMDDDEVFTFAKNI-AAPYDLVMQTKQ---LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD  260 (310)
Q Consensus       192 ~~~~~d~~~~~~~~~-~~~~~l~~~i~~---~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d  260 (310)
                      .            ++ .+....+..+.+   ..++||  |++|||.+++|+.+++++||++|++||+|..+..
T Consensus       338 ~------------g~g~p~~~~l~~v~~~~~~~~iPV--Ia~GGI~~~~di~kala~GA~~V~vGs~~~~~~e  396 (511)
T 3usb_A          338 A------------GVGVPQLTAVYDCATEARKHGIPV--IADGGIKYSGDMVKALAAGAHVVMLGSMFAGVAE  396 (511)
T ss_dssp             H------------CCCCCHHHHHHHHHHHHHTTTCCE--EEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTT
T ss_pred             c------------CCCCCcHHHHHHHHHHHHhCCCcE--EEeCCCCCHHHHHHHHHhCchhheecHHHhcCcc
Confidence            0            11 123444444432   236899  7899999999999999999999999999977653

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.93  E-value=1.7e-08  Score=99.23  Aligned_cols=128  Identities=15%  Similarity=0.188  Sum_probs=90.0

Q ss_pred             hHHHHHHHHcCCCeeeec-CCCCh---hHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHH
Q 037779          104 FVEAQILEAIGVDYVDES-EVLTP---ADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTK-GEAGTGNIVEA  177 (310)
Q Consensus       104 ~~~~~~~~~aGad~v~~~-~~~~~---~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~  177 (310)
                      .+.++.+.++|+|.|.+. .....   .+.++.+++..+++++++ .+.+.++++.+.++|+|+|.+. |+... ...  
T Consensus       233 ~~~a~~l~~aG~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~Vg~g~Gs~-~~t--  309 (496)
T 4fxs_A          233 EERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSI-CTT--  309 (496)
T ss_dssp             HHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHHTCSEEEECSSCCTT-BCH--
T ss_pred             HHHHHHHHhccCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHhCCCEEEECCCCCcC-ccc--
Confidence            467888899999998742 22122   256666666555778777 4899999999999999999986 33211 100  


Q ss_pred             HHHHHHhhcceecccccCchhHHhhhccC-CCcHHHHHHHHhc---CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779          178 VRHVRSVMGDIRVLRNMDDDEVFTFAKNI-AAPYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       178 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~-~~~~~l~~~i~~~---~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs  253 (310)
                                 +...            +. .+.+..+..+.+.   .++||  |++|||.+++|+.+++++|||+|++||
T Consensus       310 -----------r~~~------------g~g~p~~~~i~~v~~~~~~~~iPV--Ia~GGI~~~~di~kala~GAd~V~iGs  364 (496)
T 4fxs_A          310 -----------RIVT------------GVGVPQITAIADAAGVANEYGIPV--IADGGIRFSGDISKAIAAGASCVMVGS  364 (496)
T ss_dssp             -----------HHHH------------CCCCCHHHHHHHHHHHHGGGTCCE--EEESCCCSHHHHHHHHHTTCSEEEEST
T ss_pred             -----------cccc------------CCCccHHHHHHHHHHHhccCCCeE--EEeCCCCCHHHHHHHHHcCCCeEEecH
Confidence                       0000            11 1234455555442   36899  789999999999999999999999999


Q ss_pred             ccccCC
Q 037779          254 GVFKSG  259 (310)
Q Consensus       254 ai~~~~  259 (310)
                      +|..++
T Consensus       365 ~f~~t~  370 (496)
T 4fxs_A          365 MFAGTE  370 (496)
T ss_dssp             TTTTBT
T ss_pred             HHhcCC
Confidence            999865

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=98.90  E-value=1.3e-09  Score=103.42  Aligned_cols=166  Identities=25%  Similarity=0.305  Sum_probs=101.5

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEe--eccccchHHHHH-HHHcCCCeee--
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMA--KARIGHFVEAQI-LEAIGVDYVD--  119 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~--kd~i~~~~~~~~-~~~aGad~v~--  119 (310)
                      .+.++.+.++|++++ .++   .|...++        ...+.++....+|+.+  +.+...  ..+. ....|++...  
T Consensus       139 ~~~~~~a~~~G~~ai-~it---~d~p~~g--------~r~~d~r~~~~~p~~~~~~~~~~~--~~~~~~~~~g~~~~~~v  204 (370)
T 1gox_A          139 AQLVRRAERAGFKAI-ALT---VDTPRLG--------RREADIKNRFVLPPFLTLKNFEGI--DLGKMDKANDSGLSSYV  204 (370)
T ss_dssp             HHHHHHHHHTTCCEE-EEE---CSCSSCC--------CCHHHHHTTCCCCTTCCCGGGSSS--CCC---------HHHHH
T ss_pred             HHHHHHHHHCCCCEE-EEe---CCCCccc--------ccHHHHHhccCCCcccchhhhhhh--hhhccccccCccHHHHH
Confidence            367999999999998 342   2222222        1344556666677543  222210  0000 0124444311  


Q ss_pred             ---ecCCCChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccC
Q 037779          120 ---ESEVLTPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMD  195 (310)
Q Consensus       120 ---~~~~~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~  195 (310)
                         .+..... +.++.+++. .++++++ .+.+.++++.+.+.|+|+|.+.+..+.                  .+.   
T Consensus       205 ~~~~~~~~~~-~~i~~l~~~-~~~pv~vK~~~~~e~a~~a~~~Gad~I~vs~~ggr------------------~~~---  261 (370)
T 1gox_A          205 AGQIDRSLSW-KDVAWLQTI-TSLPILVKGVITAEDARLAVQHGAAGIIVSNHGAR------------------QLD---  261 (370)
T ss_dssp             HHTBCTTCCH-HHHHHHHHH-CCSCEEEECCCSHHHHHHHHHTTCSEEEECCGGGT------------------SST---
T ss_pred             HhhcCccchH-HHHHHHHHH-hCCCEEEEecCCHHHHHHHHHcCCCEEEECCCCCc------------------cCC---
Confidence               1112222 334555543 3688887 688999999999999999999643210                  000   


Q ss_pred             chhHHhhhccCCCcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          196 DDEVFTFAKNIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       196 ~d~~~~~~~~~~~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                               .....++.+..+.+..  ++||  |++|||.+++|+.+++++|||+|++|++++.+
T Consensus       262 ---------~~~~~~~~l~~v~~~~~~~ipv--ia~GGI~~~~D~~k~l~~GAdaV~iGr~~l~~  315 (370)
T 1gox_A          262 ---------YVPATIMALEEVVKAAQGRIPV--FLDGGVRRGTDVFKALALGAAGVFIGRPVVFS  315 (370)
T ss_dssp             ---------TCCCHHHHHHHHHHHTTTSSCE--EEESSCCSHHHHHHHHHHTCSEEEECHHHHHH
T ss_pred             ---------CcccHHHHHHHHHHHhCCCCEE--EEECCCCCHHHHHHHHHcCCCEEeecHHHHHH
Confidence                     0123566677776654  7899  67999999999999999999999999999864

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=98.88  E-value=1.9e-08  Score=99.18  Aligned_cols=134  Identities=14%  Similarity=0.144  Sum_probs=91.6

Q ss_pred             hHHHHHHHHcCCCeeeec--CCCC--hhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHH
Q 037779          104 FVEAQILEAIGVDYVDES--EVLT--PADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAV  178 (310)
Q Consensus       104 ~~~~~~~~~aGad~v~~~--~~~~--~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~  178 (310)
                      .+.++.+.++|+|.|.++  ...+  ..+.++.+++..+++++++ ++.+.++++++.+.|+|+|.+. ...+++..   
T Consensus       257 ~~~a~~~~~aG~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aGad~I~vg-~~~G~~~~---  332 (514)
T 1jcn_A          257 KYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAGVDGLRVG-MGCGSICI---  332 (514)
T ss_dssp             HHHHHHHHHTTCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEEC-SSCSCCBT---
T ss_pred             HHHHHHHHHcCCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcCCCEEEEC-CCCCcccc---
Confidence            356678888999999842  2212  2356666766434788887 6999999999999999999883 21111100   


Q ss_pred             HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                               .+.......        ........+..+.+..++||  |++|||.++.++.+++++|||+|++|++|+.+
T Consensus       333 ---------t~~~~~~g~--------~~~~~~~~~~~~~~~~~ipV--ia~GGI~~~~di~kala~GAd~V~iG~~~l~~  393 (514)
T 1jcn_A          333 ---------TQEVMACGR--------PQGTAVYKVAEYARRFGVPI--IADGGIQTVGHVVKALALGASTVMMGSLLAAT  393 (514)
T ss_dssp             ---------TBCCCSCCC--------CHHHHHHHHHHHHGGGTCCE--EEESCCCSHHHHHHHHHTTCSEEEESTTTTTS
T ss_pred             ---------cccccCCCc--------cchhHHHHHHHHHhhCCCCE--EEECCCCCHHHHHHHHHcCCCeeeECHHHHcC
Confidence                     000000000        00123556666766668999  67899999999999999999999999999986


Q ss_pred             CC
Q 037779          259 GD  260 (310)
Q Consensus       259 ~d  260 (310)
                      ++
T Consensus       394 ~e  395 (514)
T 1jcn_A          394 TE  395 (514)
T ss_dssp             TT
T ss_pred             Cc
Confidence            53

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=98.87  E-value=1.5e-08  Score=93.40  Aligned_cols=75  Identities=13%  Similarity=0.129  Sum_probs=53.9

Q ss_pred             cHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc-CCCHHHHHHHHHHHHHcCCChhhHHhhh
Q 037779          209 PYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK-SGDPVRRARAIVQAVTNYSDPDVLAEVS  285 (310)
Q Consensus       209 ~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~-~~dp~~~~~~~~~~~~~~~~~~~~~~~~  285 (310)
                      .++.++.+++..  ++||  |+.|||.|++|+.+++++|||+|++||+++. .++   ..+++.+.+..+.....+..++
T Consensus       228 ~~~~i~~v~~~~~~~ipv--i~~GGI~~~~da~~~l~~GAd~V~vg~~~l~~~p~---~~~~i~~~l~~~l~~~g~~si~  302 (311)
T 1jub_A          228 ALANVRAFYTRLKPEIQI--IGTGGIETGQDAFEHLLCGATMLQIGTALHKEGPA---IFDRIIKELEEIMNQKGYQSIA  302 (311)
T ss_dssp             HHHHHHHHHTTSCTTSEE--EEESSCCSHHHHHHHHHHTCSEEEECHHHHHHCTH---HHHHHHHHHHHHHHHHTCCSGG
T ss_pred             HHHHHHHHHHhcCCCCCE--EEECCCCCHHHHHHHHHcCCCEEEEchHHHhcCcH---HHHHHHHHHHHHHHHcCCCCHH
Confidence            356778888766  7999  6789999999999999999999999999996 654   3444444444443334444444


Q ss_pred             hcc
Q 037779          286 CGL  288 (310)
Q Consensus       286 ~~~  288 (310)
                      +..
T Consensus       303 e~~  305 (311)
T 1jub_A          303 DFH  305 (311)
T ss_dssp             GTT
T ss_pred             HHh
Confidence            433

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=98.86  E-value=2.9e-08  Score=91.10  Aligned_cols=136  Identities=18%  Similarity=0.193  Sum_probs=91.1

Q ss_pred             HHHHHHHcCCCeeeecCCC-C--hhH----HHHHHHh-cCCCCcEEeec-------CCHH----HHHHHHHhCCCEEEEe
Q 037779          106 EAQILEAIGVDYVDESEVL-T--PAD----EENHINK-HNFRVPFVCGC-------RNLG----ESLRRIREGAAMIRTK  166 (310)
Q Consensus       106 ~~~~~~~aGad~v~~~~~~-~--~~~----~~~~~~~-~~~~l~v~~~v-------~t~~----ea~~a~~~Gad~I~v~  166 (310)
                      .++.+.+.|||.|...-.. +  ..+    +.+.... +..++++++..       ++.+    .++.+.++|||+|++.
T Consensus       130 ~ve~Av~~GAdaV~~~i~~Gs~~~~~~l~~i~~v~~~a~~~GlpvIie~~~G~~~~~d~e~i~~aariA~elGAD~VKt~  209 (295)
T 3glc_A          130 SMDDAVRLNSCAVAAQVYIGSEYEHQSIKNIIQLVDAGMKVGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTY  209 (295)
T ss_dssp             CHHHHHHTTCSEEEEEECTTSTTHHHHHHHHHHHHHHHHTTTCCEEEEECC----CCSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             HHHHHHHCCCCEEEEEEECCCCcHHHHHHHHHHHHHHHHHcCCEEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEEeC
Confidence            5677889999998732111 1  111    2222222 34567777732       1322    3455668899999985


Q ss_pred             cCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCH-----HHHHHH
Q 037779          167 GEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATP-----ADAAMM  241 (310)
Q Consensus       167 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~-----~di~~~  241 (310)
                         +++                                      +..+++.+..++||  +++||+.+.     +.++.+
T Consensus       210 ---~t~--------------------------------------e~~~~vv~~~~vPV--v~~GG~~~~~~~~l~~v~~a  246 (295)
T 3glc_A          210 ---YVE--------------------------------------KGFERIVAGCPVPI--VIAGGKKLPEREALEMCWQA  246 (295)
T ss_dssp             ---CCT--------------------------------------TTHHHHHHTCSSCE--EEECCSCCCHHHHHHHHHHH
T ss_pred             ---CCH--------------------------------------HHHHHHHHhCCCcE--EEEECCCCCHHHHHHHHHHH
Confidence               111                                      01233444457899  458999743     357788


Q ss_pred             HHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChhhHHhh
Q 037779          242 MQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEV  284 (310)
Q Consensus       242 ~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~~~~~~  284 (310)
                      +++||+|+++|+.|++++||..+++++...++....+.-..++
T Consensus       247 i~aGA~Gv~vGRnI~q~~dp~~~~~al~~ivh~~~s~~eA~~~  289 (295)
T 3glc_A          247 IDQGASGVDMGRNIFQSDHPVAMMKAVQAVVHHNETADRAYEL  289 (295)
T ss_dssp             HHTTCSEEEESHHHHTSSSHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             HHhCCeEEEeHHHHhcCcCHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            8999999999999999999999999999999988877555443

>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*

Probab=98.85  E-value=2.6e-08  Score=87.22  Aligned_cols=158  Identities=12%  Similarity=0.107  Sum_probs=95.9

Q ss_pred             hHHHHHHHhhc---CcceEeeccccchHHHHHHHHcCCCeeeecCCCCh---hHHHHHHHhcCCCCcEEe----ecCCHH
Q 037779           81 PQLIKQIKSSV---TIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTP---ADEENHINKHNFRVPFVC----GCRNLG  150 (310)
Q Consensus        81 ~~~i~~i~~~~---~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~~~~---~~~~~~~~~~~~~l~v~~----~v~t~~  150 (310)
                      +..++.+++..   .+++-+|........++.+.++|||.+..+.....   ..+++.+++.  +..+++    .++ ..
T Consensus        44 ~~~i~~l~~~~p~~~v~lD~kl~dip~t~~~~~~~~Gad~itvh~~~g~~~l~~~~~~~~~~--g~~~~~~ll~~~t-~~  120 (216)
T 1q6o_A           44 VRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICCADINTAKGALDVAKEF--NGDVQIELTGYWT-WE  120 (216)
T ss_dssp             THHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHT--TCEEEEEECSCCC-HH
T ss_pred             HHHHHHHHHhCCCCeEEEEEEecccHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHc--CCCceeeeeeCCC-hh
Confidence            67899998873   44444554422222345778899999875533332   2344444443  444332    332 34


Q ss_pred             HHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC--CCCEEEEc
Q 037779          151 ESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG--RLPVVHFA  228 (310)
Q Consensus       151 ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~--~iPVv~ia  228 (310)
                      ......+.|.+.+..+....+      +                +        .+.....+.++.+++..  ++|+  ++
T Consensus       121 ~~~~l~~~~~~~~vl~~a~~~------~----------------~--------~G~~g~~~~i~~lr~~~~~~~~i--~v  168 (216)
T 1q6o_A          121 QAQQWRDAGIGQVVYHRSRDA------Q----------------A--------AGVAWGEADITAIKRLSDMGFKV--TV  168 (216)
T ss_dssp             HHHHHHHTTCCEEEEECCHHH------H----------------H--------TTCCCCHHHHHHHHHHHHTTCEE--EE
T ss_pred             hHHHHHhcCcHHHHHHHHHHH------H----------------h--------cCCCCCHHHHHHHHHhcCCCCcE--EE
Confidence            445555567765555311000      0                0        01111123334443322  5667  45


Q ss_pred             cCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          229 AGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       229 ~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      .|||+ ++++.+++++|||++++||+|++++||.+.+++|++.++.
T Consensus       169 ~GGI~-~~~~~~~~~aGad~ivvG~~I~~a~dp~~~~~~~~~~i~~  213 (216)
T 1q6o_A          169 TGGLA-LEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIAE  213 (216)
T ss_dssp             ESSCC-GGGGGGGTTSCCSEEEESHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             ECCcC-hhhHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHHHHHh
Confidence            79996 9999999999999999999999999999999999888764

>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A

Probab=98.83  E-value=3.2e-08  Score=87.43  Aligned_cols=59  Identities=29%  Similarity=0.359  Sum_probs=49.6

Q ss_pred             cHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779          209 PYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       209 ~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                      +.++++.+++.. ++|+  +++|||+|++++++++ .|||+|+|||++++  || +.++++.++++
T Consensus       167 ~~~~i~~i~~~~~~~Pv--~vGGGI~t~e~a~~~~-~gAD~VVVGSa~v~--~p-~~~~~~v~a~~  226 (228)
T 3vzx_A          167 DIEAVKKTKAVLETSTL--FYGGGIKDAETAKQYA-EHADVIVVGNAVYE--DF-DRALKTVAAVK  226 (228)
T ss_dssp             CHHHHHHHHHHCSSSEE--EEESSCCSHHHHHHHH-TTCSEEEECTHHHH--CH-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHhcCCCCE--EEeCCCCCHHHHHHHH-hCCCEEEEChHHhc--CH-HHHHHHHHHHh
Confidence            678889998877 7899  6799999999999998 69999999999999  33 45666666664

>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*

Probab=98.82  E-value=6.5e-08  Score=108.20  Aligned_cols=194  Identities=11%  Similarity=0.111  Sum_probs=131.5

Q ss_pred             cCCCHHHHHHHHHcCCcEEE-ecccccchhhhcCCCCCCCChHHHHHHHhhc--CcceEeecccc-ch------HHHHHH
Q 037779           41 DVVTPEQARIAEEAGACAVM-ALERVPADIRAQGGVARMSDPQLIKQIKSSV--TIPVMAKARIG-HF------VEAQIL  110 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~-~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~--~lPv~~kd~i~-~~------~~~~~~  110 (310)
                      .+.++++|.++.++|.-++. -....+  +...        .+.|+++++..  +.|+.++.+.- ..      +.++.+
T Consensus       593 ~vs~~~LaaAva~aGglG~i~g~g~~~--~e~l--------~~~i~~vk~~~~~~~p~gvN~~~~~p~~~~~~~~~~~~~  662 (2060)
T 2uva_G          593 TTVPWDFVAATMNAGYHIELAGGGYYN--AQKM--------SDAISKIEKAIPPGRGITVNLIYVNPRAMGWQIPLLGRL  662 (2060)
T ss_dssp             TTCSHHHHHHHHHTTCEECEEGGGCCS--HHHH--------HHHHHHHGGGSCTTCCEEEEEETTCTTHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHCCCEEEECcCCCCC--HHHH--------HHHHHHHHhhcccCCCeEecccccCcccchhHHHHHHHH
Confidence            46678999999999998863 111111  1111        34577778777  68998886652 11      345777


Q ss_pred             HHcCCCe--eeecCCC-ChhHHHHHHHhcCCCCcEEeecCCHHHHHHH----HHhCCCEEE---EecCCCCCchHHHHHH
Q 037779          111 EAIGVDY--VDESEVL-TPADEENHINKHNFRVPFVCGCRNLGESLRR----IREGAAMIR---TKGEAGTGNIVEAVRH  180 (310)
Q Consensus       111 ~~aGad~--v~~~~~~-~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a----~~~Gad~I~---v~g~~~~~~~~~~~~~  180 (310)
                      .+.|++.  |...... +.+++.+.++.+  ++.++..+.+..++.++    .+.|+|++.   +.|...+|+.      
T Consensus       663 ~~~gv~i~gv~~~~G~p~~e~~~~~l~~~--gi~~i~~v~~~~~a~~~v~~l~~aG~D~iV~~q~~G~eaGGH~------  734 (2060)
T 2uva_G          663 RADGVPIEGLTIGAGVPSIEVANEYIQTL--GIRHISFKPGSVDAIQQVINIAKANPTFPIILQWTGGRGGGHH------  734 (2060)
T ss_dssp             HTTTCCEEEEEEESSCCCHHHHHHHHHHS--CCSEEEECCCSHHHHHHHHHHHHHCTTSCEEEEECCTTSSSSC------
T ss_pred             HHcCCCcceEeecCCCCCHHHHHHHHHHc--CCeEEEecCCHHHHHHHHHHHHHcCCCEEEEeeeEcccCCCCC------
Confidence            8899999  7655443 334577777765  57777777788888777    789999887   6665444431      


Q ss_pred             HHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHH-----------HcCCCEE
Q 037779          181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM-----------QLGCDGV  249 (310)
Q Consensus       181 ~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~-----------~~GadgV  249 (310)
                               ....+ .          .....+++.+++..++||  |++|||.+++++.+++           .+|||||
T Consensus       735 ---------g~~d~-~----------~~~l~lv~~i~~~~~ipv--iaaGGI~~g~~i~aaltg~ws~~~g~palGAdgV  792 (2060)
T 2uva_G          735 ---------SFEDF-H----------QPILLMYSRIRKCSNIVL--VAGSGFGGSEDTYPYLTGSWSTKFGYPPMPFDGC  792 (2060)
T ss_dssp             ---------CSCCS-H----------HHHHHHHHHHHTSTTEEE--EEESSCCSHHHHHHHHHTCGGGTTTSCCCCCSCE
T ss_pred             ---------Ccccc-c----------chHHHHHHHHHHHcCCCE--EEeCCCCCHHHHHHHhcCcchhhcCCCCCCCCEE
Confidence                     00000 0          113568888888777888  7899999999999999           9999999


Q ss_pred             EEccccccCCCHHHHHHHHHHHHHcC
Q 037779          250 FVGSGVFKSGDPVRRARAIVQAVTNY  275 (310)
Q Consensus       250 ~VGsai~~~~dp~~~~~~~~~~~~~~  275 (310)
                      ++||.|+.+..- .....+++++.+.
T Consensus       793 ~~GT~f~~t~Ea-~~s~~~K~~lv~a  817 (2060)
T 2uva_G          793 MFGSRMMTAKEA-HTSKQAKQAIVDA  817 (2060)
T ss_dssp             EESGGGGGBTTS-CCCHHHHHHHHTS
T ss_pred             EEchhhhcCcCC-CCCHHHHHHHHhC
Confidence            999999997641 1234455555443

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.82  E-value=3e-08  Score=96.90  Aligned_cols=126  Identities=17%  Similarity=0.222  Sum_probs=90.5

Q ss_pred             hHHHHHHHHcCCCeeeec--CC--CChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEe-cC--CCCCchH
Q 037779          104 FVEAQILEAIGVDYVDES--EV--LTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTK-GE--AGTGNIV  175 (310)
Q Consensus       104 ~~~~~~~~~aGad~v~~~--~~--~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~-g~--~~~~~~~  175 (310)
                      ++.++.+.++|+|.+.+.  ..  ....+.++.+++..+++.++++ +-|.+.++..++.|||.|+|. |+  .++..  
T Consensus       283 ~eR~~aLv~AGvD~iviD~ahGhs~~v~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~aGAD~vkVGiGpGSiCtTr--  360 (556)
T 4af0_A          283 KDRLKLLAEAGLDVVVLDSSQGNSVYQIEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAAGADGLRIGMGSGSICITQ--  360 (556)
T ss_dssp             HHHHHHHHHTTCCEEEECCSCCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCCT--
T ss_pred             HHHHHHHHhcCCcEEEEeccccccHHHHHHHHHHHhhCCcceEEeccccCHHHHHHHHHcCCCEEeecCCCCcccccc--
Confidence            467788999999998732  22  2345677777777788888885 889999999999999999986 44  23321  


Q ss_pred             HHHHHHHHhhcceecccccCchhHHhhhccCCCc-HHHHHHH---HhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEE
Q 037779          176 EAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAP-YDLVMQT---KQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFV  251 (310)
Q Consensus       176 ~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~-~~l~~~i---~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~V  251 (310)
                                    ...            +.+.| ...+..+   .+...+||  ||.|||.++.|+.+++.+|||.||+
T Consensus       361 --------------~v~------------GvG~PQ~tAi~~~a~~a~~~~vpv--IADGGI~~sGDi~KAlaaGAd~VMl  412 (556)
T 4af0_A          361 --------------EVM------------AVGRPQGTAVYAVAEFASRFGIPC--IADGGIGNIGHIAKALALGASAVMM  412 (556)
T ss_dssp             --------------TTC------------CSCCCHHHHHHHHHHHHGGGTCCE--EEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred             --------------ccc------------CCCCcHHHHHHHHHHHHHHcCCCE--EecCCcCcchHHHHHhhcCCCEEEE
Confidence                          111            12222 1122222   22246899  7899999999999999999999999


Q ss_pred             ccccccCC
Q 037779          252 GSGVFKSG  259 (310)
Q Consensus       252 Gsai~~~~  259 (310)
                      ||.|.+++
T Consensus       413 GsllAGt~  420 (556)
T 4af0_A          413 GGLLAGTT  420 (556)
T ss_dssp             STTTTTBT
T ss_pred             chhhcccc
Confidence            99998864

>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A

Probab=98.81  E-value=2.5e-08  Score=88.30  Aligned_cols=47  Identities=21%  Similarity=0.323  Sum_probs=42.5

Q ss_pred             cHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          209 PYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       209 ~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      +.++++.+++.. ++|+  +++|||+++++++++.+ |||+|+|||+|++.
T Consensus       173 ~~~~v~~ir~~~~~~pv--~vGfGI~~~e~a~~~~~-gAD~VVVGSai~~~  220 (235)
T 3w01_A          173 DVSKVQAVSEHLTETQL--FYGGGISSEQQATEMAA-IADTIIVGDIIYKD  220 (235)
T ss_dssp             CHHHHHHHHTTCSSSEE--EEESCCCSHHHHHHHHT-TSSEEEECTHHHHC
T ss_pred             CHHHHHHHHHhcCCCCE--EEECCcCCHHHHHHHHc-CCCEEEECCceecC
Confidence            678899998876 7899  67999999999999888 99999999999993

>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...

Probab=98.81  E-value=2.4e-08  Score=94.53  Aligned_cols=74  Identities=15%  Similarity=0.187  Sum_probs=52.2

Q ss_pred             cHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc-cCCCHHHHHHHHHHHHHcCCChhhHHhhh
Q 037779          209 PYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF-KSGDPVRRARAIVQAVTNYSDPDVLAEVS  285 (310)
Q Consensus       209 ~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~-~~~dp~~~~~~~~~~~~~~~~~~~~~~~~  285 (310)
                      .++.++.+++..  ++||  |+.|||.|++|+.+++++|||+|++||+++ +.++   ..+++.+.+..+..-.++..++
T Consensus       284 a~~~v~~i~~~v~~~ipv--I~~GGI~s~~da~~~l~~GAd~V~vgra~l~~gP~---~~~~i~~~l~~~m~~~G~~~i~  358 (367)
T 3zwt_A          284 STQTIREMYALTQGRVPI--IGVGGVSSGQDALEKIRAGASLVQLYTALTFWGPP---VVGKVKRELEALLKEQGFGGVT  358 (367)
T ss_dssp             HHHHHHHHHHHTTTCSCE--EEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTH---HHHHHHHHHHHHHHHTTCSSHH
T ss_pred             HHHHHHHHHHHcCCCceE--EEECCCCCHHHHHHHHHcCCCEEEECHHHHhcCcH---HHHHHHHHHHHHHHHcCCCCHH
Confidence            357778887765  7999  678999999999999999999999999994 5444   3344444444433333333343


Q ss_pred             hc
Q 037779          286 CG  287 (310)
Q Consensus       286 ~~  287 (310)
                      +.
T Consensus       359 e~  360 (367)
T 3zwt_A          359 DA  360 (367)
T ss_dssp             HH
T ss_pred             Hh
Confidence            33

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=98.81  E-value=5.6e-08  Score=89.30  Aligned_cols=163  Identities=15%  Similarity=0.168  Sum_probs=96.0

Q ss_pred             HHHHh-hcCcceEeeccccchH---H-HHHHHH-cCCCeeeecCC------------CCh---hHHHHHHHhcCCCCcEE
Q 037779           85 KQIKS-SVTIPVMAKARIGHFV---E-AQILEA-IGVDYVDESEV------------LTP---ADEENHINKHNFRVPFV  143 (310)
Q Consensus        85 ~~i~~-~~~lPv~~kd~i~~~~---~-~~~~~~-aGad~v~~~~~------------~~~---~~~~~~~~~~~~~l~v~  143 (310)
                      +.+++ ..+.|+.++.+....+   . ++.+.+ +|+|.|.++-.            ..+   .++++.+++. .+++++
T Consensus        90 ~~~~~~~~~~p~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~-~~~pv~  168 (311)
T 1ep3_A           90 PWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAV-SKVPLY  168 (311)
T ss_dssp             HHHHHHCTTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHH-CSSCEE
T ss_pred             HHHHhcCCCCcEEEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHh-cCCCEE
Confidence            34554 3378998876554222   2 234444 89998853210            122   3444555442 256666


Q ss_pred             e----ecCCHHH-HHHHHHhCCCEEEEecCCCCCch-HHHHHHHHHhhcceecc----cccCchhHHhhhccCCCcHHHH
Q 037779          144 C----GCRNLGE-SLRRIREGAAMIRTKGEAGTGNI-VEAVRHVRSVMGDIRVL----RNMDDDEVFTFAKNIAAPYDLV  213 (310)
Q Consensus       144 ~----~v~t~~e-a~~a~~~Gad~I~v~g~~~~~~~-~~~~~~~~~~~~~~~~l----~~~~~d~~~~~~~~~~~~~~l~  213 (310)
                      +    ++.+..+ ++.+.+.|+|+|.+.+...+..+ .++        .. ..+    ...+...      ......+++
T Consensus       169 vk~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~--------~~-~~~~~~~~g~~g~~------~~~~~~~~i  233 (311)
T 1ep3_A          169 VKLSPNVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKT--------RQ-PILANITGGLSGPA------IKPVALKLI  233 (311)
T ss_dssp             EEECSCSSCSHHHHHHHHHTTCSEEEECCCEEECCBCTTT--------CS-BSSTTSCEEEESGG------GHHHHHHHH
T ss_pred             EEECCChHHHHHHHHHHHHcCCCEEEEeCCCcccccCccc--------CC-ccccCCCCcccCcc------chHHHHHHH
Confidence            6    4446556 67778899999988532111000 000        00 000    0000000      000124677


Q ss_pred             HHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHH
Q 037779          214 MQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRA  265 (310)
Q Consensus       214 ~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~  265 (310)
                      +.+++..++||  |++|||.+++++.+++++|||+|++||+++..++....+
T Consensus       234 ~~i~~~~~ipv--ia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i  283 (311)
T 1ep3_A          234 HQVAQDVDIPI--IGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKI  283 (311)
T ss_dssp             HHHHTTCSSCE--EECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHH
T ss_pred             HHHHHhcCCCE--EEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHH
Confidence            78887778999  679999999999999999999999999999977655444

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=98.79  E-value=5.1e-08  Score=92.28  Aligned_cols=98  Identities=20%  Similarity=0.285  Sum_probs=72.8

Q ss_pred             HHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccC
Q 037779          128 DEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNI  206 (310)
Q Consensus       128 ~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  206 (310)
                      +.++.+++. .++++++ ++.+.++++++.+.|+|+|.+++..+.                  .+.            .-
T Consensus       219 ~~i~~lr~~-~~~PvivK~v~~~e~a~~a~~~Gad~I~vs~~ggr------------------~~~------------~g  267 (368)
T 2nli_A          219 RDIEEIAGH-SGLPVFVKGIQHPEDADMAIKRGASGIWVSNHGAR------------------QLY------------EA  267 (368)
T ss_dssp             HHHHHHHHH-SSSCEEEEEECSHHHHHHHHHTTCSEEEECCGGGT------------------SCS------------SC
T ss_pred             HHHHHHHHH-cCCCEEEEcCCCHHHHHHHHHcCCCEEEEcCCCcC------------------CCC------------CC
Confidence            345566553 2567666 578999999999999999999754221                  000            01


Q ss_pred             CCcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          207 AAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       207 ~~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      ..+++.+..+++..  ++||  |++|||.+++|+.+++.+|||+|++|+.++.+
T Consensus       268 ~~~~~~l~~v~~~v~~~ipV--ia~GGI~~g~D~~kalalGAd~V~iGr~~l~~  319 (368)
T 2nli_A          268 PGSFDTLPAIAERVNKRVPI--VFDSGVRRGEHVAKALASGADVVALGRPVLFG  319 (368)
T ss_dssp             CCHHHHHHHHHHHHTTSSCE--EECSSCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred             CChHHHHHHHHHHhCCCCeE--EEECCCCCHHHHHHHHHcCCCEEEECHHHHHH
Confidence            23566777776643  6899  78999999999999999999999999998874

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=98.79  E-value=2.3e-08  Score=94.43  Aligned_cols=46  Identities=20%  Similarity=0.468  Sum_probs=37.5

Q ss_pred             HHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          210 YDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       210 ~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                      .+.+..+... .++||  |++|||.++.|+.+++.+|||+|++|++++.
T Consensus       266 ~~~L~~v~~~~~~ipv--ia~GGI~~g~Dv~KaLalGAdaV~ig~~~l~  312 (365)
T 3sr7_A          266 AQVLLNAQPLMDKVEI--LASGGIRHPLDIIKALVLGAKAVGLSRTMLE  312 (365)
T ss_dssp             HHHHHHHGGGTTTSEE--EECSSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred             HHHHHHHHHhcCCCeE--EEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence            3444445443 26888  7899999999999999999999999999986

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=98.77  E-value=9.5e-09  Score=94.96  Aligned_cols=53  Identities=25%  Similarity=0.228  Sum_probs=44.7

Q ss_pred             HHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc-CCCHHHH
Q 037779          210 YDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK-SGDPVRR  264 (310)
Q Consensus       210 ~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~-~~dp~~~  264 (310)
                      ++.++.+++.. ++||  |+.|||.|++|+.+++++|||+|++||+++. .++....
T Consensus       232 ~~~i~~v~~~~~~ipv--i~~GGI~~~~da~~~l~~GAd~V~ig~~~l~~~p~~~~~  286 (314)
T 2e6f_A          232 LANVNAFYRRCPDKLV--FGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGIFTR  286 (314)
T ss_dssp             HHHHHHHHHHCTTSEE--EEESSCCSHHHHHHHHHHTCSSEEECHHHHHHCTTHHHH
T ss_pred             HHHHHHHHHhcCCCCE--EEECCCCCHHHHHHHHHcCCCEEEEchhhHhcCcHHHHH
Confidence            56777777766 8999  6789999999999999999999999999995 7664433

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.77  E-value=1.2e-07  Score=92.91  Aligned_cols=129  Identities=19%  Similarity=0.263  Sum_probs=86.5

Q ss_pred             hHHHHHHHHcCCCeeeec--CCCC--hhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHH
Q 037779          104 FVEAQILEAIGVDYVDES--EVLT--PADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAV  178 (310)
Q Consensus       104 ~~~~~~~~~aGad~v~~~--~~~~--~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~  178 (310)
                      .+.+..+.++|+|.+.++  ....  ..+.++.+++..+++++++ .+.+.++++.+.+.|+|+|.+.+..++....   
T Consensus       239 ~~~a~~l~~aGvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~G~d~I~v~~~~G~~~~~---  315 (494)
T 1vrd_A          239 MERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTT---  315 (494)
T ss_dssp             HHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHH---
T ss_pred             HHHHHHHHHhCCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHcCCCEEEEcCCCCccccc---
Confidence            356778888999998742  2222  3455666666434677665 4889999999999999999985332221100   


Q ss_pred             HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc---CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccc
Q 037779          179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGV  255 (310)
Q Consensus       179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~---~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai  255 (310)
                                +.+...          . .+....+..+.+.   .++||  |++|||.++.++.+++++|||+|++|++|
T Consensus       316 ----------~~~~~~----------g-~p~~~~l~~v~~~~~~~~ipv--ia~GGI~~~~di~kala~GAd~V~iGr~~  372 (494)
T 1vrd_A          316 ----------RVVAGV----------G-VPQLTAVMECSEVARKYDVPI--IADGGIRYSGDIVKALAAGAESVMVGSIF  372 (494)
T ss_dssp             ----------HHHHCC----------C-CCHHHHHHHHHHHHHTTTCCE--EEESCCCSHHHHHHHHHTTCSEEEESHHH
T ss_pred             ----------cccCCC----------C-ccHHHHHHHHHHHHhhcCCCE--EEECCcCCHHHHHHHHHcCCCEEEECHHH
Confidence                      000000          0 1223344444332   47899  77999999999999999999999999999


Q ss_pred             ccC
Q 037779          256 FKS  258 (310)
Q Consensus       256 ~~~  258 (310)
                      +.+
T Consensus       373 l~~  375 (494)
T 1vrd_A          373 AGT  375 (494)
T ss_dssp             HTB
T ss_pred             hcC
Confidence            753

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=98.76  E-value=1.7e-07  Score=89.37  Aligned_cols=143  Identities=17%  Similarity=0.217  Sum_probs=89.4

Q ss_pred             HHHHhhcCcceEeecccc-chHHHHHHHHcCCCeeeec--C----CC----ChhHHHHHHHhcCCCCcEEe-ecCCHHHH
Q 037779           85 KQIKSSVTIPVMAKARIG-HFVEAQILEAIGVDYVDES--E----VL----TPADEENHINKHNFRVPFVC-GCRNLGES  152 (310)
Q Consensus        85 ~~i~~~~~lPv~~kd~i~-~~~~~~~~~~aGad~v~~~--~----~~----~~~~~~~~~~~~~~~l~v~~-~v~t~~ea  152 (310)
                      +++++. +.|++++.... ..+.++.+.++|+|.+..+  .    ..    +..++ ..+.+. .++++++ .+.|.+++
T Consensus       149 ~~~~~~-g~~v~~~v~~~~~~e~a~~~~~agad~i~i~~~~~~~~~~~~~~~~~~i-~~l~~~-~~~pvi~ggi~t~e~a  225 (393)
T 2qr6_A          149 AQVRDS-GEIVAVRVSPQNVREIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNL-KEFIGS-LDVPVIAGGVNDYTTA  225 (393)
T ss_dssp             HHHHHT-TSCCEEEECTTTHHHHHHHHHHTTCSEEEEECSSCCSSCCCC-----CH-HHHHHH-CSSCEEEECCCSHHHH
T ss_pred             HHHhhc-CCeEEEEeCCccHHHHHHHHHHCCCCEEEEeCCccccccCCCcccHHHH-HHHHHh-cCCCEEECCcCCHHHH
Confidence            344443 67777654332 2345567778999987532  1    11    22333 334332 3677777 68899999


Q ss_pred             HHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-------C---CC
Q 037779          153 LRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-------G---RL  222 (310)
Q Consensus       153 ~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-------~---~i  222 (310)
                      +++.+.|+|.|.+. ....+.               +.+...          + .+..+.+..+.+.       .   ++
T Consensus       226 ~~~~~~Gad~i~vg-~Gg~~~---------------~~~~~~----------g-~~~~~~l~~v~~~~~~~~~~~~~~~i  278 (393)
T 2qr6_A          226 LHMMRTGAVGIIVG-GGENTN---------------SLALGM----------E-VSMATAIADVAAARRDYLDETGGRYV  278 (393)
T ss_dssp             HHHHTTTCSEEEES-CCSCCH---------------HHHTSC----------C-CCHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHcCCCEEEEC-CCcccc---------------cccCCC----------C-CChHHHHHHHHHHHHHhHhhcCCcce
Confidence            99999999999983 321110               001110          0 1234444433332       2   28


Q ss_pred             CEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          223 PVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       223 PVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                      ||  |++|||.++.|+.+++.+||++|++|++|+.+.
T Consensus       279 pv--ia~GGI~~~~dv~kalalGA~~V~iG~~~l~~~  313 (393)
T 2qr6_A          279 HI--IADGSIENSGDVVKAIACGADAVVLGSPLARAE  313 (393)
T ss_dssp             EE--EECSSCCSHHHHHHHHHHTCSEEEECGGGGGST
T ss_pred             EE--EEECCCCCHHHHHHHHHcCCCEEEECHHHHcCC
Confidence            99  789999999999999999999999999997754

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=98.75  E-value=9.2e-08  Score=89.71  Aligned_cols=96  Identities=20%  Similarity=0.352  Sum_probs=71.7

Q ss_pred             HHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCC
Q 037779          129 EENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIA  207 (310)
Q Consensus       129 ~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~  207 (310)
                      .++.+++. .++++++ .+.+.++++++.+.|+|.|.+.+..++.                  +   +         ...
T Consensus       208 ~i~~lr~~-~~~PvivK~v~~~e~A~~a~~~GaD~I~vsn~GG~~------------------~---d---------~~~  256 (352)
T 3sgz_A          208 DLSLLQSI-TRLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQ------------------L---D---------EVS  256 (352)
T ss_dssp             HHHHHHHH-CCSCEEEEEECSHHHHHHHHHTTCSEEEECCGGGTS------------------S---C---------SSC
T ss_pred             HHHHHHHh-cCCCEEEEecCcHHHHHHHHHcCCCEEEEeCCCCCc------------------c---C---------CCc
Confidence            45555543 3566665 4789999999999999999997653211                  0   0         012


Q ss_pred             CcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          208 APYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       208 ~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                      .+++.+..+.+..  ++||  |++|||.++.|+.+++.+||++|++|++++.
T Consensus       257 ~~~~~L~~i~~av~~~ipV--ia~GGI~~g~Dv~kaLalGA~aV~iGr~~l~  306 (352)
T 3sgz_A          257 ASIDALREVVAAVKGKIEV--YMDGGVRTGTDVLKALALGARCIFLGRPILW  306 (352)
T ss_dssp             CHHHHHHHHHHHHTTSSEE--EEESSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred             cHHHHHHHHHHHhCCCCeE--EEECCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence            3566777776543  6899  6799999999999999999999999999885

>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*

Probab=98.75  E-value=1.1e-07  Score=82.78  Aligned_cols=148  Identities=18%  Similarity=0.188  Sum_probs=92.6

Q ss_pred             hHHHHHHHhh--cCcceEeecc--ccch-HHHHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHH--H--
Q 037779           81 PQLIKQIKSS--VTIPVMAKAR--IGHF-VEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLG--E--  151 (310)
Q Consensus        81 ~~~i~~i~~~--~~lPv~~kd~--i~~~-~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~--e--  151 (310)
                      ++.++++++.  +.+++-+|-.  ..+. ..++.+.++|||.+..+.... .+.++.+++.+ ++.+..++.+..  +  
T Consensus        40 ~~~i~~lr~~~~~~v~~D~kl~DI~~t~~~~v~~~~~~Gad~vtvh~~~g-~~~i~~~~~~~-gv~vl~~t~~~~~~~~~  117 (208)
T 2czd_A           40 VDIIRRLKEETGVEIIADLKLADIPNTNRLIARKVFGAGADYVIVHTFVG-RDSVMAVKELG-EIIMVVEMSHPGALEFI  117 (208)
T ss_dssp             TTHHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEESTTC-HHHHHHHHTTS-EEEEECCCCSGGGGTTT
T ss_pred             HHHHHHHHHcCCCEEEEEeeeCchHHHHHHHHHHHHhcCCCEEEEeccCC-HHHHHHHHHhC-CcEEEEecCCcchhhHH
Confidence            5688888887  4455555543  3332 234677789999987554333 34456666544 566655543321  1  


Q ss_pred             -------HHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCC-CC
Q 037779          152 -------SLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGR-LP  223 (310)
Q Consensus       152 -------a~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~-iP  223 (310)
                             +..+.+.|++.+.+...                                        ..+.++.+++... -+
T Consensus       118 ~~~v~~~~~~a~~~G~~G~~~~~~----------------------------------------~~~~i~~lr~~~~~~~  157 (208)
T 2czd_A          118 NPLTDRFIEVANEIEPFGVIAPGT----------------------------------------RPERIGYIRDRLKEGI  157 (208)
T ss_dssp             GGGHHHHHHHHHHHCCSEEECCCS----------------------------------------STHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHHHHhCCcEEEECCC----------------------------------------ChHHHHHHHHhCCCCe
Confidence                   23344556655543210                                        0112233443322 24


Q ss_pred             EEEEccCCCCCHH--HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779          224 VVHFAAGGVATPA--DAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       224 Vv~ia~GGI~t~~--di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                      +  ++.|||+ ++  ++.+++++|+|.+++||+|++++||.+.++++++.++
T Consensus       158 ~--iv~gGI~-~~g~~~~~~~~aGad~vvvGr~I~~a~dp~~~~~~l~~~i~  206 (208)
T 2czd_A          158 K--ILAPGIG-AQGGKAKDAVKAGADYIIVGRAIYNAPNPREAAKAIYDEIR  206 (208)
T ss_dssp             E--EEECCCC-SSTTHHHHHHHHTCSEEEECHHHHTSSSHHHHHHHHHHHHC
T ss_pred             E--EEECCCC-CCCCCHHHHHHcCCCEEEEChHHhcCCCHHHHHHHHHHHHh
Confidence            4  3579996 55  8999999999999999999999999999999988764

>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A

Probab=98.74  E-value=4.2e-08  Score=86.49  Aligned_cols=161  Identities=14%  Similarity=0.101  Sum_probs=99.9

Q ss_pred             hHHHHHHHhhc-CcceEe--eccccchHHHHHHHHcCCCeeeecCCCC---hhHHHHHHHhcC-CCCcEEeecCC---HH
Q 037779           81 PQLIKQIKSSV-TIPVMA--KARIGHFVEAQILEAIGVDYVDESEVLT---PADEENHINKHN-FRVPFVCGCRN---LG  150 (310)
Q Consensus        81 ~~~i~~i~~~~-~lPv~~--kd~i~~~~~~~~~~~aGad~v~~~~~~~---~~~~~~~~~~~~-~~l~v~~~v~t---~~  150 (310)
                      ++.++++++.. +.++..  |..-.....++.+.++|||.+..+....   ....++.+++.+ ....+.+++.|   .+
T Consensus        46 ~~~v~~l~~~~p~~~iflDlKl~Dip~t~~~~~~~~Gad~vtVH~~~g~~~l~~a~~~~~~~g~~~~~~~Vt~lts~~~~  125 (221)
T 3exr_A           46 SELVEVLRSLFPDKIIVADTKCADAGGTVAKNNAVRGADWMTCICSATIPTMKAARKAIEDINPDKGEIQVELYGDWTYD  125 (221)
T ss_dssp             THHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHTTTCSEEEEETTSCHHHHHHHHHHHHHHCTTTCEEEEECCSSCCHH
T ss_pred             HHHHHHHHHhCCCCcEEEEEEeeccHHHHHHHHHHcCCCEEEEeccCCHHHHHHHHHHHHhcCCCcceEEEEEcCCCCHH
Confidence            67899998864 545544  4331111234567789999976543322   234444454443 22455555433   55


Q ss_pred             HHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc--CCCCEEEEc
Q 037779          151 ESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL--GRLPVVHFA  228 (310)
Q Consensus       151 ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~--~~iPVv~ia  228 (310)
                      ++....+.+.+.+.++-. ...                    .  .+       +...+.+-++.+++.  .++++  .+
T Consensus       126 ~~~~~~~~~~~~~v~~~a-~~~--------------------~--~~-------Gvv~s~~e~~~ir~~~~~~~~i--~v  173 (221)
T 3exr_A          126 QAQQWLDAGISQAIYHQS-RDA--------------------L--LA-------GETWGEKDLNKVKKLIEMGFRV--SV  173 (221)
T ss_dssp             HHHHHHHTTCCEEEEECC-HHH--------------------H--HH-------TCCCCHHHHHHHHHHHHHTCEE--EE
T ss_pred             HHHHHHcCCHHHHHHHHH-Hhc--------------------C--CC-------ccccCHHHHHHHHHhhcCCceE--EE
Confidence            666666778888776511 100                    0  01       111222333444442  24565  45


Q ss_pred             cCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          229 AGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       229 ~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      .||| +++++..+.++|||.+++||+|++++||.+.++++++.++.
T Consensus       174 ~gGI-~~~~~~~~~~aGad~~VvG~~I~~a~dp~~a~~~~~~~~~~  218 (221)
T 3exr_A          174 TGGL-SVDTLKLFEGVDVFTFIAGRGITEAKNPAGAARAFKDEIKR  218 (221)
T ss_dssp             ESSC-CGGGGGGGTTCCCSEEEECHHHHTSSSHHHHHHHHHHHHHH
T ss_pred             ECCC-CHHHHHHHHHCCCCEEEECchhhCCCCHHHHHHHHHHHHHH
Confidence            7999 59999999999999999999999999999999999888763

>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}

Probab=98.74  E-value=9.4e-08  Score=89.63  Aligned_cols=76  Identities=16%  Similarity=0.092  Sum_probs=55.5

Q ss_pred             cHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccc-cccCCCHHHHHHHHHHHHHcCCChhhHHhhh
Q 037779          209 PYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG-VFKSGDPVRRARAIVQAVTNYSDPDVLAEVS  285 (310)
Q Consensus       209 ~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsa-i~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~  285 (310)
                      .++.++.+++..  ++||  |+.|||.|++|+.+++++|||+|++|++ ++..++   .++++.+.++.+..-..+..++
T Consensus       261 a~~~v~~i~~~~~~~ipI--Ig~GGI~s~~da~~~l~aGAd~V~igra~~~~gP~---~~~~i~~~L~~~l~~~G~~si~  335 (345)
T 3oix_A          261 ALANVHAFYKRLNPSIQI--IGTGGVXTGRDAFEHILCGASMVQIGTALHQEGPQ---IFKRITKELXAIMTEKGYETLE  335 (345)
T ss_dssp             HHHHHHHHHTTSCTTSEE--EEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCTH---HHHHHHHHHHHHHHHHTCCSGG
T ss_pred             HHHHHHHHHHHcCCCCcE--EEECCCCChHHHHHHHHhCCCEEEEChHHHhcChH---HHHHHHHHHHHHHHHcCCCCHH
Confidence            367788888865  6899  6789999999999999999999999999 676544   3455555555444444444444


Q ss_pred             hccC
Q 037779          286 CGLG  289 (310)
Q Consensus       286 ~~~~  289 (310)
                      +..|
T Consensus       336 e~~G  339 (345)
T 3oix_A          336 DFRG  339 (345)
T ss_dssp             GTTT
T ss_pred             HHHh
Confidence            4444

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=98.74  E-value=1e-07  Score=91.22  Aligned_cols=128  Identities=16%  Similarity=0.203  Sum_probs=85.4

Q ss_pred             HHHHHHHHcCCCeeee-cCCCChh---HHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHH
Q 037779          105 VEAQILEAIGVDYVDE-SEVLTPA---DEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVR  179 (310)
Q Consensus       105 ~~~~~~~~aGad~v~~-~~~~~~~---~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~  179 (310)
                      +.++.+.++|+|.|.+ .....+.   ++++.+++...++++++ .+.+.++++.+.+.|+|+|.+. ... +.+...  
T Consensus       156 ~~a~~~~~~G~d~i~i~~~~g~~~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~~Gad~I~vg-~~~-G~~~~~--  231 (404)
T 1eep_A          156 ERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVG-IGP-GSICTT--  231 (404)
T ss_dssp             HHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTTCSEEEEC-SSC-STTSHH--
T ss_pred             HHHHHHHHCCCCEEEEeCCCCChHHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHhcCCCEEEEC-CCC-CcCcCc--
Confidence            4566778899999874 2122333   34455555433678886 7899999999999999999983 211 111000  


Q ss_pred             HHHHhhcceecccccCchhHHhhhccC-CCcHHHHHHHHh---cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccc
Q 037779          180 HVRSVMGDIRVLRNMDDDEVFTFAKNI-AAPYDLVMQTKQ---LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGV  255 (310)
Q Consensus       180 ~~~~~~~~~~~l~~~~~d~~~~~~~~~-~~~~~l~~~i~~---~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai  255 (310)
                               +...            +. .+.++.+..+.+   ..++||  |++|||.+++|+.+++++|||+|++|++|
T Consensus       232 ---------~~~~------------~~g~p~~~~l~~v~~~~~~~~ipV--ia~GGI~~~~d~~~ala~GAd~V~iG~~~  288 (404)
T 1eep_A          232 ---------RIVA------------GVGVPQITAICDVYEACNNTNICI--IADGGIRFSGDVVKAIAAGADSVMIGNLF  288 (404)
T ss_dssp             ---------HHHH------------CCCCCHHHHHHHHHHHHTTSSCEE--EEESCCCSHHHHHHHHHHTCSEEEECHHH
T ss_pred             ---------cccC------------CCCcchHHHHHHHHHHHhhcCceE--EEECCCCCHHHHHHHHHcCCCHHhhCHHH
Confidence                     0000            11 113444455544   347899  67899999999999999999999999999


Q ss_pred             ccCC
Q 037779          256 FKSG  259 (310)
Q Consensus       256 ~~~~  259 (310)
                      +.++
T Consensus       289 l~~~  292 (404)
T 1eep_A          289 AGTK  292 (404)
T ss_dssp             HTBT
T ss_pred             hcCC
Confidence            8754

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=98.73  E-value=5.1e-08  Score=96.05  Aligned_cols=98  Identities=22%  Similarity=0.390  Sum_probs=70.2

Q ss_pred             HHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccC
Q 037779          128 DEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNI  206 (310)
Q Consensus       128 ~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  206 (310)
                      +.++.+++. .++++++ .+.+.++++++.+.|+|+|.+.+..++.                  +..            .
T Consensus       333 ~~i~~lr~~-~~~PvivKgv~~~e~A~~a~~aGad~I~vs~hgG~~------------------~d~------------~  381 (511)
T 1kbi_A          333 KDIEELKKK-TKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQ------------------LDF------------S  381 (511)
T ss_dssp             HHHHHHHHH-CSSCEEEEEECSHHHHHHHHHTTCSEEEECCTTTTS------------------STT------------C
T ss_pred             HHHHHHHHH-hCCcEEEEeCCCHHHHHHHHHcCCCEEEEcCCCCcc------------------CCC------------C
Confidence            345556553 2566666 4778899999999999999996543321                  000            1


Q ss_pred             CCcHHHHHHHHhcC-------CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          207 AAPYDLVMQTKQLG-------RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       207 ~~~~~l~~~i~~~~-------~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      ..+++.+..+.+..       ++||  |++|||.++.|+.+++.+|||+|++|++++.+
T Consensus       382 ~~~~~~l~~v~~~v~~~~~~~~ipV--ia~GGI~~g~Dv~kaLalGAdaV~iGr~~l~~  438 (511)
T 1kbi_A          382 RAPIEVLAETMPILEQRNLKDKLEV--FVDGGVRRGTDVLKALCLGAKGVGLGRPFLYA  438 (511)
T ss_dssp             CCHHHHHHHHHHHHHTTTCBTTBEE--EEESSCCSHHHHHHHHHHTCSEEEECHHHHHH
T ss_pred             CchHHHHHHHHHHHHhhccCCCcEE--EEECCCCCHHHHHHHHHcCCCEEEECHHHHHH
Confidence            12355555554432       6899  67999999999999999999999999998874

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*

Probab=98.73  E-value=3.5e-08  Score=93.32  Aligned_cols=45  Identities=24%  Similarity=0.275  Sum_probs=37.5

Q ss_pred             HHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          211 DLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       211 ~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                      ..+..+.+.. ++||  |++|||.++.|+.+++.+|||+|++|+.++.
T Consensus       256 ~~l~~v~~~~~~ipv--ia~GGI~~~~d~~kal~lGA~~v~ig~~~l~  301 (368)
T 3vkj_A          256 ASIMEVRYSVPDSFL--VGSGGIRSGLDAAKAIALGADIAGMALPVLK  301 (368)
T ss_dssp             HHHHHHHHHSTTCEE--EEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred             HHHHHHHHHcCCCcE--EEECCCCCHHHHHHHHHcCCCEEEEcHHHHH
Confidence            3445555544 5888  7899999999999999999999999999885

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=98.73  E-value=5.6e-08  Score=92.72  Aligned_cols=98  Identities=20%  Similarity=0.369  Sum_probs=71.2

Q ss_pred             HHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccC
Q 037779          128 DEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNI  206 (310)
Q Consensus       128 ~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  206 (310)
                      +.++.+++. .++++++ .+.+.++++++.+.|+|.|.+.+..+..                     .+         .-
T Consensus       242 ~~i~~lr~~-~~~PvivKgv~~~e~A~~a~~aGad~I~vs~~ggr~---------------------~~---------~g  290 (392)
T 2nzl_A          242 EDIKWLRRL-TSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQ---------------------LD---------GV  290 (392)
T ss_dssp             HHHHHHC---CCSCEEEEEECCHHHHHHHHHTTCCEEEECCGGGTS---------------------ST---------TC
T ss_pred             HHHHHHHHh-hCCCEEEEecCCHHHHHHHHHcCCCEEEeCCCCCCc---------------------CC---------CC
Confidence            335555542 3567776 5788999999999999999996432210                     00         01


Q ss_pred             CCcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          207 AAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       207 ~~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      .++++.+..+.+..  ++||  |++|||.+++|+.+++.+|||+|++|++++.+
T Consensus       291 ~~~~~~l~~v~~av~~~ipV--ia~GGI~~g~Dv~kalalGAd~V~iGr~~l~~  342 (392)
T 2nzl_A          291 PATIDVLPEIVEAVEGKVEV--FLDGGVRKGTDVLKALALGAKAVFVGRPIVWG  342 (392)
T ss_dssp             CCHHHHHHHHHHHHTTSSEE--EECSSCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred             cChHHHHHHHHHHcCCCCEE--EEECCCCCHHHHHHHHHhCCCeeEECHHHHHH
Confidence            23466667776543  5899  77999999999999999999999999999874

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=98.72  E-value=2.8e-07  Score=86.32  Aligned_cols=57  Identities=19%  Similarity=0.200  Sum_probs=48.8

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRARA  267 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~~  267 (310)
                      .+++++.+++..++||  |+.|||.+++++.++++.| ||.|++|++++..+|....+++
T Consensus       265 ~~~~~~~ik~~~~iPV--i~~GgI~s~e~a~~~L~~G~aD~V~iGR~~lanPdl~~ki~~  322 (340)
T 3gr7_A          265 QVPFAELIRREADIPT--GAVGLITSGWQAEEILQNGRADLVFLGRELLRNPYWPYAAAR  322 (340)
T ss_dssp             THHHHHHHHHHTTCCE--EEESSCCCHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHHH
T ss_pred             cHHHHHHHHHHcCCcE--EeeCCCCCHHHHHHHHHCCCeeEEEecHHHHhCchHHHHHHH
Confidence            4677888888778999  6789999999999999998 9999999999998886655443

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=98.72  E-value=5.6e-08  Score=111.72  Aligned_cols=178  Identities=16%  Similarity=0.207  Sum_probs=117.4

Q ss_pred             CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc--CcceEeeccccc--h--------HHHHH
Q 037779           42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV--TIPVMAKARIGH--F--------VEAQI  109 (310)
Q Consensus        42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~--~lPv~~kd~i~~--~--------~~~~~  109 (310)
                      ..++++|.+..++|.-+..--.... .....        .+.|+++++.+  +.|+-++...-.  +        ..++.
T Consensus       439 ~s~~~LaaAVs~AGglG~l~~~g~~-~~~~l--------~~~i~~~r~~~~~~~p~~vNl~~~~p~~~~~~~g~~~~~~~  509 (3089)
T 3zen_D          439 TVDAKIVAAAANAGHWAELAGGGQV-TEQIF--------NDRIAELETLLEPGRAIQFNTLFLDPYLWKLQVGGKRLVQR  509 (3089)
T ss_dssp             HTSHHHHHHHHHTTCEEEECSTTCC-SHHHH--------HHHHHHHHHHSCTTCCCEEEEECSCHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCceeecCCCCC-CHHHH--------HHHHHHHHHhcCCCCceeechhhcChhhhhhccCHHHHHHH
Confidence            4468999999999998762110000 00011        34567777777  677766644321  1        34677


Q ss_pred             HHHcC--CCeeeecCCCCh-hHHHHHHHh-cCCCCcEEe-ecCCHHHHHHHHHhCCC------EEEEecCCCCCchHHHH
Q 037779          110 LEAIG--VDYVDESEVLTP-ADEENHINK-HNFRVPFVC-GCRNLGESLRRIREGAA------MIRTKGEAGTGNIVEAV  178 (310)
Q Consensus       110 ~~~aG--ad~v~~~~~~~~-~~~~~~~~~-~~~~l~v~~-~v~t~~ea~~a~~~Gad------~I~v~g~~~~~~~~~~~  178 (310)
                      +.+.|  +|.|.....+++ ++....+.. +..|+.++. .+.|.++++++.+.|+|      +|.+.|...+++..   
T Consensus       510 ~~~~g~~vdgv~~~aG~P~~ee~~~~i~~l~~~Gi~~i~~~~~t~~~a~~~~~i~~d~~~~~y~vv~~G~eaGGH~g---  586 (3089)
T 3zen_D          510 ARQSGAPIDGLVVSAGIPDLEEAVDIIDELNEVGISHVVFKPGTVEQIRSVIRIAAEVPTKPVIVHIEGGRAGGHHS---  586 (3089)
T ss_dssp             HHHTTCSCCEEEEESSCCCHHHHHHHHTSTTHHHHCSEEECCCSHHHHHHHHHHHTTSTTSCEEEEECCSSSSEECC---
T ss_pred             HHHcCCCceEEEEeCCCCchhHhHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHhhhhcCCCcEEEEEeCCCcCCCCC---
Confidence            88899  777876655553 333333332 223454444 78899999999998888      67777765555410   


Q ss_pred             HHHHHhhcceecccccCchhHHhhhccCCCcHHHH----HHHHhcCCCCEEEEccCCCCCHHHHHHHH-----------H
Q 037779          179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLV----MQTKQLGRLPVVHFAAGGVATPADAAMMM-----------Q  243 (310)
Q Consensus       179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~----~~i~~~~~iPVv~ia~GGI~t~~di~~~~-----------~  243 (310)
                                                 ......++    ..+++..++||  |++|||.+++++..++           .
T Consensus       587 ---------------------------~~~~~~ll~~~~~~ir~~~~iPV--iaaGGI~d~~~vaaal~g~ws~~~~~p~  637 (3089)
T 3zen_D          587 ---------------------------WEDLDDLLLATYSELRSRSNITI--CVGGGIGTPERSAEYLSGRWAEVHGYPL  637 (3089)
T ss_dssp             ---------------------------SCCHHHHHHHHHHHHTTCTTEEE--EEESSCCCTTTTHHHHHTGGGGTTTCCC
T ss_pred             ---------------------------cccHHHHHHHHHHHHhhcCCCeE--EEEeCCCCHHHHHHHhccccccccCccC
Confidence                                       01122333    66776677898  7899999999999999           9


Q ss_pred             cCCCEEEEccccccCCC
Q 037779          244 LGCDGVFVGSGVFKSGD  260 (310)
Q Consensus       244 ~GadgV~VGsai~~~~d  260 (310)
                      +|||||+|||+|+.+..
T Consensus       638 lGAdGV~vGTrfl~t~E  654 (3089)
T 3zen_D          638 MPIDGILVGTAAMATLE  654 (3089)
T ss_dssp             CCCSEEECSSTTTTCTT
T ss_pred             CCCCEEEecHHHHhCcc
Confidence            99999999999999763

>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1

Probab=98.71  E-value=5.3e-08  Score=89.85  Aligned_cols=138  Identities=14%  Similarity=0.120  Sum_probs=86.4

Q ss_pred             HHHHHHHcCCCeee----ecCCCChh----HHHHHHHh-cCCCCcEEeecC----------C----HHH-HHHHHHhCCC
Q 037779          106 EAQILEAIGVDYVD----ESEVLTPA----DEENHINK-HNFRVPFVCGCR----------N----LGE-SLRRIREGAA  161 (310)
Q Consensus       106 ~~~~~~~aGad~v~----~~~~~~~~----~~~~~~~~-~~~~l~v~~~v~----------t----~~e-a~~a~~~Gad  161 (310)
                      .++.+.++|||.|-    .....+..    .+.+.... +..++++++++.          +    ..+ ++.+.++|+|
T Consensus       113 ~ve~a~~~GAdaV~vlv~~~~d~~~~~~~~~i~~v~~~~~~~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~~lGaD  192 (304)
T 1to3_A          113 NAQAVKRDGAKALKLLVLWRSDEDAQQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGAD  192 (304)
T ss_dssp             CHHHHHHTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCS
T ss_pred             hHHHHHHcCCCEEEEEEEcCCCccHHHHHHHHHHHHHHHHHcCCcEEEEEECCCCccccCCChhHHHHHHHHHHHHcCCC
Confidence            56788999999985    11111111    22222222 346777776641          1    233 4556678999


Q ss_pred             EEEEecCCCC-CchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCC-EEEEccCCCCCH----
Q 037779          162 MIRTKGEAGT-GNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLP-VVHFAAGGVATP----  235 (310)
Q Consensus       162 ~I~v~g~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iP-Vv~ia~GGI~t~----  235 (310)
                      ++++..+.+. +.                      .+.          ..+..+.....+++| |  +++||+ ++    
T Consensus       193 ~iKv~~~~~~~g~----------------------~~~----------~~~vv~~~~~~~~~P~V--v~aGG~-~~~~~~  237 (304)
T 1to3_A          193 LYKVEMPLYGKGA----------------------RSD----------LLTASQRLNGHINMPWV--ILSSGV-DEKLFP  237 (304)
T ss_dssp             EEEECCGGGGCSC----------------------HHH----------HHHHHHHHHHTCCSCEE--ECCTTS-CTTTHH
T ss_pred             EEEeCCCcCCCCC----------------------HHH----------HHHHHHhccccCCCCeE--EEecCC-CHHHHH
Confidence            9998632110 00                      000          011222222225789 7  568999 56    


Q ss_pred             HHHHHHHHcCCCEEEEccccccC----CCHHHHH--------HHHHHHHHcCCCh
Q 037779          236 ADAAMMMQLGCDGVFVGSGVFKS----GDPVRRA--------RAIVQAVTNYSDP  278 (310)
Q Consensus       236 ~di~~~~~~GadgV~VGsai~~~----~dp~~~~--------~~~~~~~~~~~~~  278 (310)
                      +.++.+++.|++||+||++|+++    +||.+++        +++.+.++....|
T Consensus       238 ~~~~~a~~aGa~Gv~vGRaI~q~~~~~~dp~~~~~~~~~~~~~~l~~iv~~~~~~  292 (304)
T 1to3_A          238 RAVRVAMEAGASGFLAGRAVWSSVIGLPDTELMLRDVSAPKLQRLGEIVDEMMGK  292 (304)
T ss_dssp             HHHHHHHHTTCCEEEESHHHHGGGTTCSCHHHHHHHTHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCeEEEEehHHhCccccCCCHHHHHHhhchHHHHHHHHHHhcCCCh
Confidence            45888999999999999999999    9999999        9999888764443

>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*

Probab=98.71  E-value=3.2e-08  Score=93.06  Aligned_cols=76  Identities=16%  Similarity=0.113  Sum_probs=56.1

Q ss_pred             cHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC-CCHHHHHHHHHHHHHcCCChhhHHhhhh
Q 037779          209 PYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS-GDPVRRARAIVQAVTNYSDPDVLAEVSC  286 (310)
Q Consensus       209 ~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~-~dp~~~~~~~~~~~~~~~~~~~~~~~~~  286 (310)
                      .++.+..+++.. ++||  |+.|||.|++|+.+++.+|||+|++|++++.. ++.   ++++.+.++.+..-..+..+++
T Consensus       264 a~~~i~~v~~~~~~ipI--I~~GGI~s~~da~~~l~aGAd~V~vgra~l~~GP~~---~~~i~~~l~~~m~~~G~~si~e  338 (354)
T 4ef8_A          264 ALANINAFYRRCPGKLI--FGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSI---FERLTSELLGVMAKKRYQTLDE  338 (354)
T ss_dssp             HHHHHHHHHHHCTTSEE--EEESCCCSHHHHHHHHHHTEEEEEECHHHHHHCTTH---HHHHHHHHHHHHHHHTCCSGGG
T ss_pred             HHHHHHHHHHhCCCCCE--EEECCcCCHHHHHHHHHcCCCEEEEhHHHHHhCHHH---HHHHHHHHHHHHHHcCCCCHHH
Confidence            477788887764 7899  67899999999999999999999999999985 553   4445555554444444555554


Q ss_pred             ccC
Q 037779          287 GLG  289 (310)
Q Consensus       287 ~~~  289 (310)
                      ..|
T Consensus       339 l~G  341 (354)
T 4ef8_A          339 FRG  341 (354)
T ss_dssp             TTT
T ss_pred             HHH
Confidence            444

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=98.67  E-value=6.6e-07  Score=83.62  Aligned_cols=56  Identities=18%  Similarity=0.252  Sum_probs=47.5

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~  266 (310)
                      .+++++.+++..++||  |+.|||.|++++.++++.| ||.|++|++++..+|....++
T Consensus       265 ~~~~~~~ir~~~~iPV--i~~Ggi~s~~~a~~~l~~G~aD~V~iGR~~i~nPdl~~ki~  321 (338)
T 1z41_A          265 QVSFAEKIREQADMAT--GAVGMITDGSMAEEILQNGRADLIFIGRELLRDPFFARTAA  321 (338)
T ss_dssp             THHHHHHHHHHHCCEE--EECSSCCSHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHH
T ss_pred             hHHHHHHHHHHCCCCE--EEECCCCCHHHHHHHHHcCCceEEeecHHHHhCchHHHHHH
Confidence            4567777877678899  6789999999999999998 999999999999888665443

>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*

Probab=98.62  E-value=1.1e-07  Score=90.92  Aligned_cols=76  Identities=14%  Similarity=0.185  Sum_probs=54.0

Q ss_pred             cHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC-CCHHHHHHHHHHHHHcCCChhhHHhhh
Q 037779          209 PYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS-GDPVRRARAIVQAVTNYSDPDVLAEVS  285 (310)
Q Consensus       209 ~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~-~dp~~~~~~~~~~~~~~~~~~~~~~~~  285 (310)
                      ..++++.+++..  ++||  |+.|||.|++|+.+++.+|||+|++||+++.. ++   .++++.+.+..+..-..+..++
T Consensus       331 al~~I~~v~~~v~~~iPI--Ig~GGI~s~eDa~e~l~aGAd~VqIgra~l~~GP~---~~~~i~~~L~~~l~~~G~~si~  405 (415)
T 3i65_A          331 STKFICEMYNYTNKQIPI--IASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMK---SAVQIKRELNHLLYQRGYYNLK  405 (415)
T ss_dssp             HHHHHHHHHHHTTTCSCE--EECSSCCSHHHHHHHHHHTEEEEEESHHHHHHGGG---HHHHHHHHHHHHHHHTTCSSST
T ss_pred             HHHHHHHHHHHhCCCCCE--EEECCCCCHHHHHHHHHcCCCEEEEcHHHHhcCHH---HHHHHHHHHHHHHHHcCCCCHH
Confidence            356777777765  7999  67899999999999999999999999999764 44   3444555555443334444444


Q ss_pred             hccC
Q 037779          286 CGLG  289 (310)
Q Consensus       286 ~~~~  289 (310)
                      +..|
T Consensus       406 e~~G  409 (415)
T 3i65_A          406 EAIG  409 (415)
T ss_dssp             TTTT
T ss_pred             HHhC
Confidence            4433

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.62  E-value=1.7e-07  Score=99.55  Aligned_cols=159  Identities=20%  Similarity=0.256  Sum_probs=89.9

Q ss_pred             HHHHHHHHcCCcEEEecc-cccchhhhc-CCCCCCCChH----HHHHHHhhcCcceEeeccccc---hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALE-RVPADIRAQ-GGVARMSDPQ----LIKQIKSSVTIPVMAKARIGH---FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~~d~r~~-~G~~~~~~~~----~i~~i~~~~~lPv~~kd~i~~---~~~~~~~~~aGad  116 (310)
                      +.++.+.++|+++| .+| .+|...+.. .|+..+.+++    .++.+++.+++||++|...+.   .+.++.+.++|+|
T Consensus       652 ~~a~~~~~~g~d~i-ein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~~~~Pv~vK~~~~~~~~~~~a~~~~~~G~d  730 (1025)
T 1gte_A          652 ELSRKAEASGADAL-ELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGAD  730 (1025)
T ss_dssp             HHHHHHHHTTCSEE-EEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSSCEEEEECSCSSCHHHHHHHHHHHTCS
T ss_pred             HHHHHHHhcCCCEE-EEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHhhCCceEEEeCCChHHHHHHHHHHHHcCCC
Confidence            56888888999998 777 444432211 2333444455    456667778999999865431   2345667778888


Q ss_pred             eeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecC-CCCCchHHHHHHHHHhhcceecccccC
Q 037779          117 YVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGE-AGTGNIVEAVRHVRSVMGDIRVLRNMD  195 (310)
Q Consensus       117 ~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~-~~~~~~~~~~~~~~~~~~~~~~l~~~~  195 (310)
                      +|..+......        .+..+..     +          +...+..++. ..++                  +.  .
T Consensus       731 ~i~v~Nt~~~~--------~~~~~~~-----~----------~~~~~~~~gr~~~gg------------------~s--g  767 (1025)
T 1gte_A          731 GVTATNTVSGL--------MGLKADG-----T----------PWPAVGAGKRTTYGG------------------VS--G  767 (1025)
T ss_dssp             EEEECCCEEEC--------CCBCTTS-----C----------BSSCBTTTTBBCCEE------------------EE--S
T ss_pred             EEEEecccccc--------ccccccc-----c----------ccccccccccccCCC------------------CC--c
Confidence            87643211000        0000000     0          0000000000 0000                  00  0


Q ss_pred             chhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          196 DDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       196 ~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                      +       .......+.++.+++.. ++||  |++|||.|++|+.+++++||++|++|++++.
T Consensus       768 ~-------~~~~~~~~~v~~v~~~~~~ipv--i~~GGI~s~~da~~~l~~Ga~~v~vg~~~l~  821 (1025)
T 1gte_A          768 T-------AIRPIALRAVTTIARALPGFPI--LATGGIDSAESGLQFLHSGASVLQVCSAVQN  821 (1025)
T ss_dssp             G-------GGHHHHHHHHHHHHHHSTTCCE--EEESSCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred             c-------cchhHHHHHHHHHHHHcCCCCE--EEecCcCCHHHHHHHHHcCCCEEEEeecccc
Confidence            0       00011245677777665 7999  6789999999999999999999999999997

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=98.60  E-value=3.3e-07  Score=86.15  Aligned_cols=177  Identities=16%  Similarity=0.127  Sum_probs=103.2

Q ss_pred             ccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC--cceEeecccc--chHHHHHHHHc--
Q 037779           40 MDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT--IPVMAKARIG--HFVEAQILEAI--  113 (310)
Q Consensus        40 ~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~--lPv~~kd~i~--~~~~~~~~~~a--  113 (310)
                      .....+++|.++.++|.-.+  +.      .  +    +...+....+++.-.  .++.+.....  ..+.++.+.+.  
T Consensus        66 ~~~~~~~lA~Ava~~Gglg~--i~------~--~----~s~e~~~~~i~~~p~~l~~v~~~~g~~~~~~~~~~~l~~~~~  131 (351)
T 2c6q_A           66 DTVGTFEMAKVLCKFSLFTA--VH------K--H----YSLVQWQEFAGQNPDCLEHLAASSGTGSSDFEQLEQILEAIP  131 (351)
T ss_dssp             TTTSCHHHHHHHHHTTCEEE--CC------T--T----CCHHHHHHHHHHCGGGCTTEEEEECSSHHHHHHHHHHHHHCT
T ss_pred             CCCCcHHHHHHHHHCCCEEE--Ec------C--C----CCHHHHHHHHhhCchhhheeEeecCCChHHHHHHHHHHhccC
Confidence            34456899999999997665  20      0  0    111222334432111  1233222221  23455566665  


Q ss_pred             CCCeeeec-CCCChh---HHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHHHHHhhcc
Q 037779          114 GVDYVDES-EVLTPA---DEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRHVRSVMGD  187 (310)
Q Consensus       114 Gad~v~~~-~~~~~~---~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~~  187 (310)
                      |++.+..+ ..-.+.   +.++.+++..+++++++ .+.|.++++++.+.|+|+|.+. +..+....             
T Consensus       132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~aGaD~I~v~~g~G~~~~~-------------  198 (351)
T 2c6q_A          132 QVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILSGADIIKVGIGPGSVCTT-------------  198 (351)
T ss_dssp             TCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTBCH-------------
T ss_pred             CCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCcCc-------------
Confidence            99987532 111233   34555555444677765 5889999999999999999874 22110000             


Q ss_pred             eecccccCchhHHhhhccCC-CcHHHHHHHHh---cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          188 IRVLRNMDDDEVFTFAKNIA-APYDLVMQTKQ---LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       188 ~~~l~~~~~d~~~~~~~~~~-~~~~l~~~i~~---~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                       +.+.            ++. +....+..+.+   ..++||  |++|||.++.|+.+++.+||++|++|+.|+.+
T Consensus       199 -r~~~------------g~~~p~~~~l~~v~~~~~~~~ipv--Ia~GGI~~g~di~kAlalGA~~V~vG~~fl~~  258 (351)
T 2c6q_A          199 -RKKT------------GVGYPQLSAVMECADAAHGLKGHI--ISDGGCSCPGDVAKAFGAGADFVMLGGMLAGH  258 (351)
T ss_dssp             -HHHH------------CBCCCHHHHHHHHHHHHHHTTCEE--EEESCCCSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred             -cccC------------CCCccHHHHHHHHHHHHhhcCCcE--EEeCCCCCHHHHHHHHHcCCCceeccHHHhcC
Confidence             0000            111 12233333322   236899  77999999999999999999999999999864

>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G*

Probab=98.60  E-value=4.9e-07  Score=100.84  Aligned_cols=199  Identities=11%  Similarity=0.111  Sum_probs=124.7

Q ss_pred             cCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC--cceEeeccccc-------hH
Q 037779           35 RGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT--IPVMAKARIGH-------FV  105 (310)
Q Consensus        35 ~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~--lPv~~kd~i~~-------~~  105 (310)
                      .+|+.....++++|.+..++|.-++.--....+ ...+        -+.|+++++.++  .|+-++...-+       .+
T Consensus       594 ~~gM~~~~~~~~lvaAvsnAGglg~l~~~~~~~-~e~l--------~~~I~~~~~~t~~~~~~gvN~~~~~~~~~~~~~~  664 (2051)
T 2uv8_G          594 VPGMTPCTVSPDFVAATTNAGYTIELAGGGYFS-AAGM--------TAAIDSVVSQIEKGSTFGINLIYVNPFMLQWGIP  664 (2051)
T ss_dssp             ECCCHHHHTCHHHHHHHHHTTCEEEEEGGGCCS-HHHH--------HHHHHHHHHHSCTTCCEEEEEETTCTTHHHHHHH
T ss_pred             cCCCccccccHHHHHHHHcCCcEEEEccCCCCC-HHHH--------HHHHHHHHHhcCCCCceEEEEeecChhhhhhhHH
Confidence            333333455789999999999988631100000 0011        235666777664  68888855431       14


Q ss_pred             HHHHHHHcCCCe--eeecCCC-ChhHHHHHHHhcCCCCcEEeecC----CHHHHHHHHHhCCCEE---EEecCCCCCchH
Q 037779          106 EAQILEAIGVDY--VDESEVL-TPADEENHINKHNFRVPFVCGCR----NLGESLRRIREGAAMI---RTKGEAGTGNIV  175 (310)
Q Consensus       106 ~~~~~~~aGad~--v~~~~~~-~~~~~~~~~~~~~~~l~v~~~v~----t~~ea~~a~~~Gad~I---~v~g~~~~~~~~  175 (310)
                      .++.+.+.|+..  |...... .++...+.+...  |+.++.-+.    ....+.++.++|+|++   .+.|...+||..
T Consensus       665 ~~~~~~~~gv~i~~v~~~ag~p~~~~~~~~i~~l--G~~vi~~~~~~~~a~~~~~~~~~~g~d~~ii~~~~G~eaGGH~g  742 (2051)
T 2uv8_G          665 LIKELRSKGYPIQFLTIGAGVPSLEVASEYIETL--GLKYLGLKPGSIDAISQVINIAKAHPNFPIALQWTGGRGGGHHS  742 (2051)
T ss_dssp             HHHHHHHTTCSEEEEEEESSCCCHHHHHHHHHHS--CCSCEEECCCSHHHHHHHHHHHHHSTTSCEEEEECCSSCSEECC
T ss_pred             HHHHHHHcCCCcceEEecCCCCchhhHHHHHHHc--CCEEEEecCchHHHHHHHHHHHHhCCCceeEEEEEccCcCCCCC
Confidence            457778899988  6644442 334555666554  666665333    2334567778899983   444555555421


Q ss_pred             HHHHHHHHhhcceecccccCchhHHhhhccCC-CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHH-----------H
Q 037779          176 EAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIA-APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMM-----------Q  243 (310)
Q Consensus       176 ~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~-~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~-----------~  243 (310)
                                       . +         ++. ....++..+.+..++||  ||+|||.+++++..++           .
T Consensus       743 -----------------~-~---------d~~~~~l~l~~~v~~~~~ipv--iaaGGi~dg~~~~aaL~g~w~~~~g~~~  793 (2051)
T 2uv8_G          743 -----------------F-E---------DAHTPMLQMYSKIRRHPNIML--IFGSGFGSADDTYPYLTGEWSTKFDYPP  793 (2051)
T ss_dssp             -----------------S-C---------CSSHHHHHHHHHHTTCTTBCC--EEESSCCSHHHHTHHHHTCGGGTTTCCC
T ss_pred             -----------------c-c---------cccccHHHHHHHHHhcCCceE--EEeCCCCCHHHHHHHHccccccccCccC
Confidence                             0 0         011 13456788888788999  7899999999999999           8


Q ss_pred             cCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          244 LGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       244 ~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      +|||||.|||.|+-+..- .....+++++-+
T Consensus       794 lgadGv~~GTrf~~t~Ea-~~~~~~K~~iv~  823 (2051)
T 2uv8_G          794 MPFDGFLFGSRVMIAKEV-KTSPDAKKCIAA  823 (2051)
T ss_dssp             CCCSCEECSGGGTTSTTS-CCCHHHHHHHHT
T ss_pred             CCCceeeechHHHhCccc-ccCHHHHHHHHh
Confidence            999999999999997642 223445555444

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=98.56  E-value=2.2e-07  Score=86.68  Aligned_cols=51  Identities=20%  Similarity=0.264  Sum_probs=42.1

Q ss_pred             HHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc-CCCHH
Q 037779          210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK-SGDPV  262 (310)
Q Consensus       210 ~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~-~~dp~  262 (310)
                      .+.++.+++..  ++||  |+.|||.|++++.+++++|||+|++|++++. .++..
T Consensus       276 ~~~i~~i~~~~~~~ipV--i~~GGI~~~~da~~~l~~GAd~V~igr~~l~~~P~~~  329 (336)
T 1f76_A          276 TEIIRRLSLELNGRLPI--IGVGGIDSVIAAREKIAAGASLVQIYSGFIFKGPPLI  329 (336)
T ss_dssp             HHHHHHHHHHHTTSSCE--EEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCHHHH
T ss_pred             HHHHHHHHHHhCCCCCE--EEECCCCCHHHHHHHHHCCCCEEEeeHHHHhcCcHHH
Confidence            45666776654  7999  6789999999999999999999999999886 55444

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=98.56  E-value=1.4e-06  Score=81.68  Aligned_cols=56  Identities=23%  Similarity=0.239  Sum_probs=47.6

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~  266 (310)
                      ..++++.+++..++||  |+.|||.+++++.++++.| ||.|++|++++..+|....++
T Consensus       276 ~~~~~~~ir~~~~iPV--i~~Ggi~t~e~a~~~l~~G~aD~V~iGR~~lanPdl~~k~~  332 (349)
T 3hgj_A          276 QVPFADAVRKRVGLRT--GAVGLITTPEQAETLLQAGSADLVLLGRVLLRDPYFPLRAA  332 (349)
T ss_dssp             THHHHHHHHHHHCCEE--EECSSCCCHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHHH
T ss_pred             cHHHHHHHHHHcCceE--EEECCCCCHHHHHHHHHCCCceEEEecHHHHhCchHHHHHH
Confidence            4667788887667899  6789999999999999998 999999999999888665544

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=98.49  E-value=3.7e-06  Score=82.18  Aligned_cols=182  Identities=15%  Similarity=0.149  Sum_probs=107.2

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhh-----cCcceEeeccc----cchHHHHHHHHcCC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSS-----VTIPVMAKARI----GHFVEAQILEAIGV  115 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~-----~~lPv~~kd~i----~~~~~~~~~~~aGa  115 (310)
                      .+.++.+.+.+...+.+++    +....-|.  ....+.++.+...     ...++.+...+    ...+.++.+.++|+
T Consensus       173 ~~a~~~m~~~~~~~lpVVd----~~g~lvGi--vt~~Dil~~~~~~~~~~d~~~~~~vg~~i~~~~~~~~~a~~l~~~G~  246 (491)
T 1zfj_A          173 ETAERILHEHRIEKLPLVD----NSGRLSGL--ITIKDIEKVIEFPHAAKDEFGRLLVAAAVGVTSDTFERAEALFEAGA  246 (491)
T ss_dssp             HHHHHHHHHTTCSEEEEEC----TTSBEEEE--EEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCCEEEEEc----CCCcEEEE--EEHHHHHHHHhccccccCcCCcEEEEEeccCchhHHHHHHHHHHcCC
Confidence            3789999999988775441    11111122  1224455555430     11122222122    23467788889999


Q ss_pred             Ceeeec-CCCChh---HHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceec
Q 037779          116 DYVDES-EVLTPA---DEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRV  190 (310)
Q Consensus       116 d~v~~~-~~~~~~---~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~  190 (310)
                      |.+..+ ..-...   +.++.+.+..++++++. .+.+.+.+..+.++|+|.|.+. ..++ .+..+           +.
T Consensus       247 d~ivi~~a~g~~~~~~~~i~~l~~~~p~~pvi~G~v~t~~~a~~~~~~Gad~I~vg-~g~g-~~~~t-----------r~  313 (491)
T 1zfj_A          247 DAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVG-IGPG-SICTT-----------RV  313 (491)
T ss_dssp             SEEEECCSCTTCHHHHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEEC-SSCC-TTBCH-----------HH
T ss_pred             CeEEEeeecCcchhHHHHHHHHHHHCCCCcEeCCCccCHHHHHHHHHcCCCEEEEC-ccCC-cceEE-----------ee
Confidence            998733 211222   34444444333566665 4788999999999999999884 2111 11000           00


Q ss_pred             ccccCchhHHhhhccCCCcHHHHHHHHh---cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          191 LRNMDDDEVFTFAKNIAAPYDLVMQTKQ---LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       191 l~~~~~d~~~~~~~~~~~~~~l~~~i~~---~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      +...           ..+..+.++.+.+   ..++||  |++|||.++.|+.+++++||++|++|++|+.+
T Consensus       314 ~~~~-----------~~p~~~~l~~~~~~~~~~~ipv--ia~GGi~~~~di~kal~~GA~~v~vG~~~~~~  371 (491)
T 1zfj_A          314 VAGV-----------GVPQVTAIYDAAAVAREYGKTI--IADGGIKYSGDIVKALAAGGNAVMLGSMFAGT  371 (491)
T ss_dssp             HTCC-----------CCCHHHHHHHHHHHHHHTTCEE--EEESCCCSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred             ecCC-----------CCCcHHHHHHHHHHHhhcCCCE--EeeCCCCCHHHHHHHHHcCCcceeeCHHhhCC
Confidence            0010           0123344444433   246898  78999999999999999999999999999864

>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*

Probab=98.47  E-value=4.8e-07  Score=84.32  Aligned_cols=114  Identities=18%  Similarity=0.205  Sum_probs=74.6

Q ss_pred             HHHHHHHhcCCCCcEEee-c---CCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779          128 DEENHINKHNFRVPFVCG-C---RNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA  203 (310)
Q Consensus       128 ~~~~~~~~~~~~l~v~~~-v---~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  203 (310)
                      +.++.+++  .++++++. +   .++++++.+.+.|+|+|.+.+..++. +. .++..+..  +.....++. +      
T Consensus       172 ~~i~~vr~--~~~Pv~vK~v~~g~~~e~a~~~~~~G~d~I~vs~~ggt~-~~-~~~~~r~~--~~~~~~~~~-~------  238 (332)
T 1vcf_A          172 ERLAELLP--LPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTS-WA-RVEEWVRF--GEVRHPELC-E------  238 (332)
T ss_dssp             HHHHHHCS--CSSCEEEECSSSCCCHHHHHHHTTSCCSEEECCCBTSCC-HH-HHHHTC----------CCT-T------
T ss_pred             HHHHHHHc--CCCCEEEEecCCCCCHHHHHHHHHcCCCEEEeCCCCCCc-ch-hHHHhhcc--ccchhhhHh-h------
Confidence            34444443  57888887 7   79999999999999999987553321 11 00000000  000000000 0      


Q ss_pred             ccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          204 KNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       204 ~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                       .-.+.++.+..+++.. ++||  |++|||.+++|+.+++.+|||+|++|++++.
T Consensus       239 -~g~~~~~~l~~v~~~~~~ipv--ia~GGI~~~~d~~kal~~GAd~V~igr~~l~  290 (332)
T 1vcf_A          239 -IGIPTARAILEVREVLPHLPL--VASGGVYTGTDGAKALALGADLLAVARPLLR  290 (332)
T ss_dssp             -CSCBHHHHHHHHHHHCSSSCE--EEESSCCSHHHHHHHHHHTCSEEEECGGGHH
T ss_pred             -ccccHHHHHHHHHHhcCCCeE--EEECCCCCHHHHHHHHHhCCChHhhhHHHHH
Confidence             0123466777777765 7999  6789999999999999999999999999995

>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1

Probab=98.46  E-value=1.5e-06  Score=84.03  Aligned_cols=76  Identities=14%  Similarity=0.186  Sum_probs=52.7

Q ss_pred             cHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc-CCCHHHHHHHHHHHHHcCCChhhHHhhh
Q 037779          209 PYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK-SGDPVRRARAIVQAVTNYSDPDVLAEVS  285 (310)
Q Consensus       209 ~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~-~~dp~~~~~~~~~~~~~~~~~~~~~~~~  285 (310)
                      .+++++.+++..  ++||  |+.|||.|++|+.+++++|||+|++||+++. .++.   .+.+.+.+..+....++..++
T Consensus       359 sl~~i~~v~~~v~~~iPV--Ig~GGI~s~~DA~e~l~aGAd~Vqigrall~~gP~l---~~~i~~~l~~~l~~~G~~si~  433 (443)
T 1tv5_A          359 STKFICEMYNYTNKQIPI--IASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKS---AVQIKRELNHLLYQRGYYNLK  433 (443)
T ss_dssp             HHHHHHHHHHHTTTCSCE--EEESSCCSHHHHHHHHHTTEEEEEESHHHHHHGGGH---HHHHHHHHHHHHHHHTCSSSG
T ss_pred             HHHHHHHHHHHcCCCCcE--EEECCCCCHHHHHHHHHcCCCEEEEcHHHHhcChHH---HHHHHHHHHHHHHHhCCCCHH
Confidence            356778887765  8999  6789999999999999999999999999764 4443   344444444333333333444


Q ss_pred             hccC
Q 037779          286 CGLG  289 (310)
Q Consensus       286 ~~~~  289 (310)
                      +..|
T Consensus       434 e~~G  437 (443)
T 1tv5_A          434 EAIG  437 (443)
T ss_dssp             GGTT
T ss_pred             HHhh
Confidence            4333

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.44  E-value=1.2e-06  Score=86.11  Aligned_cols=128  Identities=16%  Similarity=0.142  Sum_probs=83.0

Q ss_pred             HHHHHHHHcCCCeeeec--CCCC--hhHHHHHHHhcCCC-CcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHH
Q 037779          105 VEAQILEAIGVDYVDES--EVLT--PADEENHINKHNFR-VPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAV  178 (310)
Q Consensus       105 ~~~~~~~~aGad~v~~~--~~~~--~~~~~~~~~~~~~~-l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~  178 (310)
                      +.++.+.+.|++.+..+  ....  ..+.++.++++.++ +++++ .+.+.++++.+.++|+|++.+ |...++. ..  
T Consensus       245 e~~~~l~e~gv~~l~Vd~~~g~~~~~~~~i~~lk~~~~~~~~Vi~G~V~t~~~a~~l~~aGad~I~V-g~~~g~~-~~--  320 (503)
T 1me8_A          245 ERVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKI-GIGGGSI-CI--  320 (503)
T ss_dssp             HHHHHHHHHTCSEEEECCSCCCSHHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTCSEEEE-CSSCSTT-CC--
T ss_pred             HHHHHHHhhhccceEEecccCcccchhhHHHHHHHhCCCCceEeeccccCHHHHHHHHHhCCCeEEe-cccCCcC-cc--
Confidence            45677778899987642  2212  12344555554345 66665 588999999999999999988 4433211 00  


Q ss_pred             HHHHHhhcceecccccCchhHHhhhccCCC-cHHHHHHHHhcC---------CCCEEEEccCCCCCHHHHHHHHHcCCCE
Q 037779          179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAA-PYDLVMQTKQLG---------RLPVVHFAAGGVATPADAAMMMQLGCDG  248 (310)
Q Consensus       179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~-~~~l~~~i~~~~---------~iPVv~ia~GGI~t~~di~~~~~~Gadg  248 (310)
                               .+.+.            +++. ....+..+.+..         ++||  |++|||.++.|+.+++++||++
T Consensus       321 ---------~r~~~------------~~g~p~~~~l~~v~~~~~~~~~~~~~~ipv--ia~GGi~~~~di~kAlalGA~~  377 (503)
T 1me8_A          321 ---------TREQK------------GIGRGQATAVIDVVAERNKYFEETGIYIPV--CSDGGIVYDYHMTLALAMGADF  377 (503)
T ss_dssp             ---------STTTT------------CCCCCHHHHHHHHHHHHHHHHHHHSEECCE--EEESCCCSHHHHHHHHHTTCSE
T ss_pred             ---------ccccc------------CCCCchHHHHHHHHHHHHHHhhhcCCCceE--EEeCCCCCHHHHHHHHHcCCCE
Confidence                     00000            1111 233333433221         5899  7899999999999999999999


Q ss_pred             EEEccccccCC
Q 037779          249 VFVGSGVFKSG  259 (310)
Q Consensus       249 V~VGsai~~~~  259 (310)
                      |++|+.|..+.
T Consensus       378 V~iG~~~~~~~  388 (503)
T 1me8_A          378 IMLGRYFARFE  388 (503)
T ss_dssp             EEESHHHHTBT
T ss_pred             EEECchhhccc
Confidence            99999997643

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*

Probab=98.40  E-value=4e-06  Score=79.06  Aligned_cols=57  Identities=25%  Similarity=0.184  Sum_probs=48.0

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRARA  267 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~~  267 (310)
                      ..++++.+++..++||  |+.|||.+++++.++++.| ||.|++|++++..+|....++.
T Consensus       283 ~~~~~~~ir~~~~iPV--i~~GgI~s~e~a~~~l~~G~aD~V~iGR~~lanPdl~~k~~~  340 (363)
T 3l5l_A          283 MGPIAERVRREAKLPV--TSAWGFGTPQLAEAALQANQLDLVSVGRAHLADPHWAYFAAK  340 (363)
T ss_dssp             THHHHHHHHHHHTCCE--EECSSTTSHHHHHHHHHTTSCSEEECCHHHHHCTTHHHHHHH
T ss_pred             hHHHHHHHHHHcCCcE--EEeCCCCCHHHHHHHHHCCCccEEEecHHHHhCchHHHHHHH
Confidence            4567777877678999  6789999999999999998 9999999999998886655443

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=98.37  E-value=6.1e-07  Score=85.25  Aligned_cols=98  Identities=19%  Similarity=0.316  Sum_probs=71.7

Q ss_pred             HHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccC
Q 037779          128 DEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNI  206 (310)
Q Consensus       128 ~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  206 (310)
                      +.++.+++. .++++++ .+.+.++++.+.+.|+|.|.+.+..++.                  +     |.       .
T Consensus       215 ~~i~~i~~~-~~~Pv~vkgv~t~e~a~~a~~aGad~I~vs~~gg~~------------------~-----d~-------~  263 (380)
T 1p4c_A          215 EALRWLRDL-WPHKLLVKGLLSAEDADRCIAEGADGVILSNHGGRQ------------------L-----DC-------A  263 (380)
T ss_dssp             HHHHHHHHH-CCSEEEEEEECCHHHHHHHHHTTCSEEEECCGGGTS------------------C-----TT-------C
T ss_pred             HHHHHHHHh-cCCCEEEEecCcHHHHHHHHHcCCCEEEEcCCCCCc------------------C-----CC-------C
Confidence            455555543 3567665 5789999999999999999985332110                  0     00       0


Q ss_pred             CCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       207 ~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      ..+++.++.+++..++||  |++|||.+++|+.+++.+||++|++|++++..
T Consensus       264 ~~~~~~l~~v~~~~~~pV--ia~GGI~~~~dv~kal~~GAdaV~iGr~~l~~  313 (380)
T 1p4c_A          264 ISPMEVLAQSVAKTGKPV--LIDSGFRRGSDIVKALALGAEAVLLGRATLYG  313 (380)
T ss_dssp             CCGGGTHHHHHHHHCSCE--EECSSCCSHHHHHHHHHTTCSCEEESHHHHHH
T ss_pred             cCHHHHHHHHHHHcCCeE--EEECCCCCHHHHHHHHHhCCcHhhehHHHHHH
Confidence            124556666666556699  78999999999999999999999999999874

>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A

Probab=98.36  E-value=6.3e-06  Score=71.29  Aligned_cols=54  Identities=20%  Similarity=0.274  Sum_probs=45.0

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRR  264 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~  264 (310)
                      ..+.+..+++..++|+  |+.||+++++++.++++.|++++++||+|+..+.....
T Consensus       162 ~~~~i~~~~~~~~~Pv--ia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~~~~~~~  215 (237)
T 3cwo_X          162 DTEMIRFVRPLTTLPI--IASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRE  215 (237)
T ss_dssp             CHHHHHHHGGGCCSCE--EEESCCCSHHHHHHHHHHTCSEEEESHHHHTTSSCHHH
T ss_pred             cHHHHHHHHHhcCCCE--EecCCCCCHHHHHHHHHcCcHHHhhhHHHHcCCCCHHH
Confidence            3677888887778999  55799999999999999999999999999877644333

>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*

Probab=98.35  E-value=2.9e-06  Score=79.48  Aligned_cols=56  Identities=16%  Similarity=0.083  Sum_probs=48.2

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~  266 (310)
                      .+++.+.+++..++||  |+.|||.+++++.++++.| ||.|++|++++..+|....++
T Consensus       265 ~~~~~~~ir~~~~iPV--i~~Ggi~t~e~Ae~~l~~G~aD~V~iGR~~lanPdl~~k~~  321 (343)
T 3kru_A          265 QVKYAETIKKRCNIKT--SAVGLITTQELAEEILSNERADLVALGRELLRNPYWVLHTY  321 (343)
T ss_dssp             THHHHHHHHHHHTCEE--EEESSCCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHTC
T ss_pred             eehHHHHHHHhcCccc--ceeeeeeHHHHHHHHHhchhhHHHHHHHHHhcCCeEEEEEe
Confidence            4667778887777899  6789999999999999997 999999999999888776554

>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}

Probab=98.33  E-value=2.6e-06  Score=77.73  Aligned_cols=92  Identities=21%  Similarity=0.214  Sum_probs=66.6

Q ss_pred             hHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhcc
Q 037779          127 ADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN  205 (310)
Q Consensus       127 ~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  205 (310)
                      ...++.+++ .+....+.++++|.+|++.+.+.|+|||.+... +                         ++.       
T Consensus       183 ~~av~~ar~~~~~~~~IgVev~t~eea~eA~~aGaD~I~ld~~-~-------------------------~~~-------  229 (286)
T 1x1o_A          183 GEAVRRAKARAPHYLKVEVEVRSLEELEEALEAGADLILLDNF-P-------------------------LEA-------  229 (286)
T ss_dssp             HHHHHHHHHHSCTTSCEEEEESSHHHHHHHHHHTCSEEEEESC-C-------------------------HHH-------
T ss_pred             HHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcCCCEEEECCC-C-------------------------HHH-------
Confidence            445555655 344578999999999999999999999998621 1                         000       


Q ss_pred             CCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          206 IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       206 ~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                         ..+..+.++  .++|+  .++||| +++++.++.++|+|+|.||+.++.++
T Consensus       230 ---~k~av~~v~--~~ipi--~AsGGI-t~eni~~~a~tGvD~IsVgs~~~~a~  275 (286)
T 1x1o_A          230 ---LREAVRRVG--GRVPL--EASGNM-TLERAKAAAEAGVDYVSVGALTHSAK  275 (286)
T ss_dssp             ---HHHHHHHHT--TSSCE--EEESSC-CHHHHHHHHHHTCSEEECTHHHHSCC
T ss_pred             ---HHHHHHHhC--CCCeE--EEEcCC-CHHHHHHHHHcCCCEEEEcHHHcCCC
Confidence               012222232  25798  567999 69999999999999999999887654

>1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4

Probab=98.33  E-value=3.7e-05  Score=66.65  Aligned_cols=185  Identities=18%  Similarity=0.201  Sum_probs=112.0

Q ss_pred             CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC-cceEeecccc-chHH-HHHHHHcCCCee
Q 037779           42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT-IPVMAKARIG-HFVE-AQILEAIGVDYV  118 (310)
Q Consensus        42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~-lPv~~kd~i~-~~~~-~~~~~~aGad~v  118 (310)
                      ..+++.++.+.++|++++-.. ..|       .|-+.-+++..+++.+... -+..+..|++ ..+. .+.+..++.|.|
T Consensus         8 it~~eda~~a~~~GaD~iGfi-f~~-------~SpR~V~~~~a~~i~~~~~~~~~~VgVfvn~~~~~i~~~~~~~~ld~v   79 (203)
T 1v5x_A            8 ITRLEDALLAEALGAFALGFV-LAP-------GSRRRIAPEAARAIGEALGPFVVRVGVFRDQPPEEVLRLMEEARLQVA   79 (203)
T ss_dssp             CCCHHHHHHHHHHTCSEEEEE-CCT-------TCTTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHTTCSEE
T ss_pred             CCcHHHHHHHHHcCCCEEEEE-ecC-------CCCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhhCCCEE
Confidence            466899999999999998322 122       2333445788888876643 1222333444 2334 356677999999


Q ss_pred             eecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecC-CCCCchHHHHHHHHHhhcceecccccCch
Q 037779          119 DESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGE-AGTGNIVEAVRHVRSVMGDIRVLRNMDDD  197 (310)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  197 (310)
                      ..+-..++. ..+.+.. +..+.-.+.+++..++ .+....+|++-+... .++|                         
T Consensus        80 QLHG~e~~~-~~~~l~~-~~~vika~~v~~~~~l-~~~~~~~d~~LlD~~~gGtG-------------------------  131 (203)
T 1v5x_A           80 QLHGEEPPE-WAEAVGR-FYPVIKAFPLEGPARP-EWADYPAQALLLDGKRPGSG-------------------------  131 (203)
T ss_dssp             EECSCCCHH-HHHHHTT-TSCEEEEEECSSSCCG-GGGGSSCSEEEEECSSTTSC-------------------------
T ss_pred             EECCCCCHH-HHHHhcc-CCCEEEEEEcCChHhh-hhhhcCCCEEEEcCCCCCCC-------------------------
Confidence            755444454 4444432 2222222344444333 332333787766532 2222                         


Q ss_pred             hHHhhhccCCCcHHHHHH-HHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC---CHHHHHHHHHHHHH
Q 037779          198 EVFTFAKNIAAPYDLVMQ-TKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG---DPVRRARAIVQAVT  273 (310)
Q Consensus       198 ~~~~~~~~~~~~~~l~~~-i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~---dp~~~~~~~~~~~~  273 (310)
                              ..-+|++++. ..  .+.|+  +.+||| +|+|+.+++..++.||=|.|.+-.++   | .+.+++|.+.++
T Consensus       132 --------~~fdW~~l~~~~~--~~~p~--~LAGGL-~peNV~~ai~~~p~gVDvsSGvE~~pG~KD-~~ki~~fi~~~r  197 (203)
T 1v5x_A          132 --------EAYPRAWAKPLLA--TGRRV--ILAGGI-APENLEEVLALRPYALDLASGVEEAPGVKS-AEKLRALFARLA  197 (203)
T ss_dssp             --------CCCCGGGGHHHHH--TTSCE--EECSSC-CSTTHHHHHHHCCSEEEESGGGEEETTEEC-HHHHHHHHHHHH
T ss_pred             --------CccCHHHHHhhhc--cCCcE--EEECCC-CHHHHHHHHhcCCCEEEeCCceecCCCCcC-HHHHHHHHHHHH
Confidence                    1225555554 32  24698  569999 69999887777999999999998632   4 457788888887


Q ss_pred             cCC
Q 037779          274 NYS  276 (310)
Q Consensus       274 ~~~  276 (310)
                      .++
T Consensus       198 ~~~  200 (203)
T 1v5x_A          198 SLR  200 (203)
T ss_dssp             HTC
T ss_pred             Hhh
Confidence            654

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*

Probab=98.29  E-value=4.9e-06  Score=78.91  Aligned_cols=55  Identities=20%  Similarity=0.166  Sum_probs=46.1

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~  266 (310)
                      ++++++.+++..++||  |+.||| +++++.++++.| ||+|++|++++..++....++
T Consensus       287 ~~~~~~~ik~~~~iPv--i~~Ggi-~~~~a~~~l~~g~aD~V~igR~~l~~P~l~~k~~  342 (377)
T 2r14_A          287 PEGFREQMRQRFKGGL--IYCGNY-DAGRAQARLDDNTADAVAFGRPFIANPDLPERFR  342 (377)
T ss_dssp             CTTHHHHHHHHCCSEE--EEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             hHHHHHHHHHHCCCCE--EEECCC-CHHHHHHHHHCCCceEEeecHHHHhCchHHHHHH
Confidence            3456777887778899  678999 699999999987 999999999999888765554

>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A

Probab=98.29  E-value=6.8e-05  Score=65.10  Aligned_cols=186  Identities=16%  Similarity=0.123  Sum_probs=113.1

Q ss_pred             CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC-cceEeecccc-chHH-HHHHHHcCCCee
Q 037779           42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT-IPVMAKARIG-HFVE-AQILEAIGVDYV  118 (310)
Q Consensus        42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~-lPv~~kd~i~-~~~~-~~~~~~aGad~v  118 (310)
                      ..+++.++.+.++|++++-.. ..|       .|-+.-+++..+++.+... -+..+..|++ ..+. .+.+...+.|.|
T Consensus         9 it~~eda~~a~~~GaD~iGfi-f~~-------~SpR~V~~~~a~~i~~~~~~~~~~VgVfvn~~~~~i~~~~~~~~ld~v   80 (205)
T 1nsj_A            9 ITNLEDALFSVESGADAVGFV-FYP-------KSKRYISPEDARRISVELPPFVFRVGVFVNEEPEKILDVASYVQLNAV   80 (205)
T ss_dssp             CCSHHHHHHHHHHTCSEEEEE-CCT-------TCTTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHHTCSEE
T ss_pred             CCcHHHHHHHHHcCCCEEEEE-ecC-------CCCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhhCCCEE
Confidence            466899999999999998322 122       2333445788888876643 2222333444 2334 356677999999


Q ss_pred             eecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCC--CCCchHHHHHHHHHhhcceecccccCc
Q 037779          119 DESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEA--GTGNIVEAVRHVRSVMGDIRVLRNMDD  196 (310)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~  196 (310)
                      ..+-..++ +..+.++. ...+.-.+.+++..++..+.+..+|++-+....  ++|+                       
T Consensus        81 QLHG~e~~-~~~~~l~~-~~~vika~~v~~~~~l~~~~~~~~d~~LlD~~~~~~GGt-----------------------  135 (205)
T 1nsj_A           81 QLHGEEPI-ELCRKIAE-RILVIKAVGVSNERDMERALNYREFPILLDTKTPEYGGS-----------------------  135 (205)
T ss_dssp             EECSCCCH-HHHHHHHT-TSEEEEEEEESSHHHHHHHGGGTTSCEEEEESCSSSSSC-----------------------
T ss_pred             EECCCCCH-HHHHHHhc-CCCEEEEEEcCCHHHHHHHHHcCCCEEEECCCCCCCCCC-----------------------
Confidence            75544444 44444532 122333345667666655544458887665321  1121                       


Q ss_pred             hhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCC---CHHHHHHHHHHHH
Q 037779          197 DEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSG---DPVRRARAIVQAV  272 (310)
Q Consensus       197 d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~---dp~~~~~~~~~~~  272 (310)
                              +..-+|++++.+. ..+.|+  +.+||| +|+|+.++++ .++.||=|.|.+-.++   | .+.+++|.+.+
T Consensus       136 --------G~~fdw~~l~~~~-~~~~p~--~LAGGL-~peNV~~ai~~~~p~gVDvsSGvE~~pG~KD-~~ki~~fi~~~  202 (205)
T 1nsj_A          136 --------GKTFDWSLILPYR-DRFRYL--VLSGGL-NPENVRSAIDVVRPFAVDVSSGVEAFPGKKD-HDSIKMFIKNA  202 (205)
T ss_dssp             --------CSCCCGGGTGGGG-GGSSCE--EEESSC-CTTTHHHHHHHHCCSEEEESGGGEEETTEEC-HHHHHHHHHHH
T ss_pred             --------CCccCHHHHHhhh-cCCCcE--EEECCC-CHHHHHHHHHhcCCCEEEECCceecCCCCcC-HHHHHHHHHHH
Confidence                    1122455544431 124698  558999 6999988776 6999999999998642   4 45678888776


Q ss_pred             H
Q 037779          273 T  273 (310)
Q Consensus       273 ~  273 (310)
                      +
T Consensus       203 r  203 (205)
T 1nsj_A          203 K  203 (205)
T ss_dssp             H
T ss_pred             h
Confidence            5

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=98.25  E-value=1e-05  Score=71.31  Aligned_cols=128  Identities=20%  Similarity=0.168  Sum_probs=77.5

Q ss_pred             HHHHHHHHcCCcEEEe-cc-cccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeecCC
Q 037779           46 EQARIAEEAGACAVMA-LE-RVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEV  123 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~-l~-~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~  123 (310)
                      ..++.+.+.|+++|.. +| .+   .  ..|.. ..-.+.++++++.++ |+++|..+..                  ..
T Consensus        74 ~~~~~A~~~Gad~Id~viN~g~---~--~~~~~-~~~~~~i~~v~~a~~-pv~vKvi~e~------------------~~  128 (225)
T 1mzh_A           74 KEAVEAVRDGAQELDIVWNLSA---F--KSEKY-DFVVEELKEIFRETP-SAVHKVIVET------------------PY  128 (225)
T ss_dssp             HHHHHHHHTTCSEEEEECCHHH---H--HTTCH-HHHHHHHHHHHHTCT-TSEEEEECCG------------------GG
T ss_pred             HHHHHHHHcCCCEEEEEecHHH---H--hcCCh-HHHHHHHHHHHHHhc-CceEEEEEeC------------------CC
Confidence            5577888899999832 44 11   0  11110 001346778888877 8887764321                  01


Q ss_pred             CChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779          124 LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA  203 (310)
Q Consensus       124 ~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  203 (310)
                      ++.+++.                   +-++.+.++|+|+|.++.-.+++                               
T Consensus       129 l~~~~~~-------------------~~a~~a~eaGad~I~tstg~~~g-------------------------------  158 (225)
T 1mzh_A          129 LNEEEIK-------------------KAVEICIEAGADFIKTSTGFAPR-------------------------------  158 (225)
T ss_dssp             CCHHHHH-------------------HHHHHHHHHTCSEEECCCSCSSS-------------------------------
T ss_pred             CCHHHHH-------------------HHHHHHHHhCCCEEEECCCCCCC-------------------------------
Confidence            1222221                   12445667899999765211111                               


Q ss_pred             ccCCCcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779          204 KNIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       204 ~~~~~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs  253 (310)
                         +.+++.++.+++..  ++||  +++|||.|++++.+++++||+.|.+++
T Consensus       159 ---ga~~~~i~~v~~~v~~~ipV--ia~GGI~t~~da~~~l~aGA~~iG~s~  205 (225)
T 1mzh_A          159 ---GTTLEEVRLIKSSAKGRIKV--KASGGIRDLETAISMIEAGADRIGTSS  205 (225)
T ss_dssp             ---CCCHHHHHHHHHHHTTSSEE--EEESSCCSHHHHHHHHHTTCSEEEESC
T ss_pred             ---CCCHHHHHHHHHHhCCCCcE--EEECCCCCHHHHHHHHHhCchHHHHcc
Confidence               22456666666643  6899  679999999999999999999655554

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*

Probab=98.25  E-value=9.1e-06  Score=76.71  Aligned_cols=55  Identities=18%  Similarity=0.169  Sum_probs=46.9

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~  266 (310)
                      ++++++.+++..++||  |+.||| +++++.++++.| ||+|++|++++..++....++
T Consensus       281 ~~~~~~~i~~~~~iPv--i~~Ggi-~~~~a~~~l~~g~aD~V~igR~~i~~P~l~~~~~  336 (365)
T 2gou_A          281 PVSFKRALREAYQGVL--IYAGRY-NAEKAEQAINDGLADMIGFGRPFIANPDLPERLR  336 (365)
T ss_dssp             CHHHHHHHHHHCCSEE--EEESSC-CHHHHHHHHHTTSCSEEECCHHHHHCTTHHHHHH
T ss_pred             cHHHHHHHHHHCCCcE--EEeCCC-CHHHHHHHHHCCCcceehhcHHHHhCchHHHHHH
Confidence            4567788888778999  668999 899999999998 999999999999888765543

>4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus}

Probab=98.23  E-value=0.00013  Score=64.37  Aligned_cols=190  Identities=22%  Similarity=0.264  Sum_probs=112.0

Q ss_pred             ceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHH
Q 037779           30 LAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQ  108 (310)
Q Consensus        30 ~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~  108 (310)
                      |.++.+|     ..+++.++ +.++|++++-.+ ..|       +|-|.-+++..+++.+....|+... .+.+..+..+
T Consensus        21 M~VKICG-----it~~ed~~-a~~~gaD~iGfI-f~~-------~SpR~V~~~~A~~i~~~~~~~~~~v~v~v~~~ei~~   86 (228)
T 4aaj_A           21 MFVKICG-----IKSLEELE-IVEKHADATGVV-VNS-------NSKRRIPLEKAREIIENSAIPVFLVSTMVGFSEWAM   86 (228)
T ss_dssp             CEEEECC-----CCSHHHHH-HHHTTCSEEEEE-CSS-------SSTTBCCHHHHHHHHHHCSSCEEEEECCCCHHHHHH
T ss_pred             eEEEECC-----CCcHHHHH-HHHcCCCEEEEE-ecC-------CCCCCCCHHHHHHHHHhhCCCCEEEeccCchHHHHH
Confidence            4555666     34577776 467899998322 222       3334445888888887776666543 3333223345


Q ss_pred             HHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEE--eecCC----H-HHHH----HHHHhCCCEEEEecCCCCCchHHH
Q 037779          109 ILEAIGVDYVDESEVLTPADEENHINKHNFRVPFV--CGCRN----L-GESL----RRIREGAAMIRTKGEAGTGNIVEA  177 (310)
Q Consensus       109 ~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~--~~v~t----~-~ea~----~a~~~Gad~I~v~g~~~~~~~~~~  177 (310)
                      .+...+.|.|-.+-..++ +..+.+++. ++++++  ..+.+    . +++.    ......+|++-+....++|.    
T Consensus        87 ~i~~~~ld~vQLHG~E~~-~~~~~l~~~-~~~~viKa~~v~~~~~~~~~~~~~~~~~~~~~~~d~~LlDs~GGtG~----  160 (228)
T 4aaj_A           87 AIERTGAQYIQVHSNALP-QTIDTLKKE-FGVFVMKAFRVPTISKNPEEDANRLLSEISRYNADMVLLDTGAGSGK----  160 (228)
T ss_dssp             HHHHHTCSEEEECSCCCH-HHHHHHHHH-HCCEEEEEEECCSSCSCHHHHHHHHHHHHHHSCCSEEEEEC----------
T ss_pred             HHHhccchheecccccCH-HHHHHHhhc-cCceEEEEEEecccccchhhhHHHHHHHHhccCCCEEccCCCCCCcC----
Confidence            667799999865544344 444445442 133333  22221    1 2222    22345678876653333331    


Q ss_pred             HHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccc
Q 037779          178 VRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVF  256 (310)
Q Consensus       178 ~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~  256 (310)
                                                   .-+|++++.+..  +.|+  +.+||+ +|+|+.++++ .++.||=|.|.+=
T Consensus       161 -----------------------------~fDW~~~~~~~~--~~p~--iLAGGL-~peNV~~Ai~~~~P~gVDVsSGVE  206 (228)
T 4aaj_A          161 -----------------------------LHDLRVSSLVAR--KIPV--IVAGGL-NAENVEEVIKVVKPYGVDVSSGVE  206 (228)
T ss_dssp             ------------------------------CCCHHHHHHHH--HSCE--EEESSC-CTTTHHHHHHHHCCSEEEESGGGE
T ss_pred             -----------------------------cCChHHHHHhhh--cCCe--EEECCC-CHHHHHHHHHHhCCCEEEeCCCCC
Confidence                                         225777776654  3688  458999 6999999886 6999999999997


Q ss_pred             cCC--CHHHHHHHHHHHHHc
Q 037779          257 KSG--DPVRRARAIVQAVTN  274 (310)
Q Consensus       257 ~~~--dp~~~~~~~~~~~~~  274 (310)
                      ...  | .+.+++|++.+++
T Consensus       207 s~G~KD-~~KI~~Fi~~vr~  225 (228)
T 4aaj_A          207 KYGIKD-PKLVEEFVRRAKN  225 (228)
T ss_dssp             ETTEEC-HHHHHHHHHHHHH
T ss_pred             CCCCcC-HHHHHHHHHHHhc
Confidence            532  4 3567888887763

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.23  E-value=1.3e-05  Score=81.20  Aligned_cols=55  Identities=16%  Similarity=0.210  Sum_probs=47.7

Q ss_pred             HHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHH
Q 037779          210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       210 ~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~  266 (310)
                      .++++.+++..++||  ++.|||.+++++.++++.| ||+|++|++++..+|....++
T Consensus       269 ~~~~~~i~~~~~iPv--i~~Ggi~~~~~a~~~l~~g~aD~V~~gR~~l~~P~l~~k~~  324 (671)
T 1ps9_A          269 SWVTRKLKGHVSLPL--VTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSKAQ  324 (671)
T ss_dssp             HHHHHHHTTSCSSCE--EECSSCCSHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHHH
T ss_pred             HHHHHHHHHhcCceE--EEeCCCCCHHHHHHHHHcCCCCEEEeCHHHHhCcHHHHHHH
Confidence            567888888778999  6789999999999999998 999999999999888765443

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=98.21  E-value=1.4e-05  Score=75.34  Aligned_cols=55  Identities=20%  Similarity=0.212  Sum_probs=47.0

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~  266 (310)
                      ++++++.+++..++||  |+.||| +++++.++++.| ||+|++|++++..++....++
T Consensus       282 ~~~~~~~v~~~~~iPv--i~~Ggi-t~~~a~~~l~~g~aD~V~~gR~~l~~P~~~~~~~  337 (364)
T 1vyr_A          282 SEAFRQKVRERFHGVI--IGAGAY-TAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQ  337 (364)
T ss_dssp             CHHHHHHHHHHCCSEE--EEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             cHHHHHHHHHHCCCCE--EEECCc-CHHHHHHHHHCCCccEEEECHHHHhChhHHHHHH
Confidence            4667788888778999  668999 899999999987 999999999999888765544

>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}

Probab=98.19  E-value=1e-05  Score=77.73  Aligned_cols=52  Identities=25%  Similarity=0.291  Sum_probs=42.7

Q ss_pred             HHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHH
Q 037779          211 DLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRA  265 (310)
Q Consensus       211 ~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~  265 (310)
                      ++.+.+++..  ++||  |+.|||.|++++.++++. ||.|++|++++..++....+
T Consensus       306 ~~a~~Ik~~v~~~iPV--I~~GgI~t~e~Ae~~L~~-aDlVaiGR~~IanPdlv~ki  359 (419)
T 3l5a_A          306 PVNQIVYEHLAGRIPL--IASGGINSPESALDALQH-ADMVGMSSPFVTEPDFVHKL  359 (419)
T ss_dssp             BHHHHHHHHHTTSSCE--EECSSCCSHHHHHHHGGG-CSEEEESTHHHHCTTHHHHH
T ss_pred             HHHHHHHHHcCCCCeE--EEECCCCCHHHHHHHHHh-CCcHHHHHHHHHCcHHHHHH
Confidence            4556666643  6899  678999999999999999 99999999999988765444

>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1

Probab=98.15  E-value=3.2e-06  Score=76.99  Aligned_cols=95  Identities=16%  Similarity=0.153  Sum_probs=68.6

Q ss_pred             hhHHHHHHHhcCCC-CcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779          126 PADEENHINKHNFR-VPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK  204 (310)
Q Consensus       126 ~~~~~~~~~~~~~~-l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  204 (310)
                      ....++.+++..+. ..+.++++|++|++.+.+.|+|+|.+...                          +++.      
T Consensus       179 i~~av~~ar~~~~~~~~I~VEV~tleea~eA~~aGaD~I~LDn~--------------------------~~e~------  226 (285)
T 1o4u_A          179 AERAVQEVRKIIPFTTKIEVEVENLEDALRAVEAGADIVMLDNL--------------------------SPEE------  226 (285)
T ss_dssp             HHHHHHHHHTTSCTTSCEEEEESSHHHHHHHHHTTCSEEEEESC--------------------------CHHH------
T ss_pred             HHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcCCCEEEECCC--------------------------CHHH------
Confidence            44556666664333 78999999999999999999999998621                          1111      


Q ss_pred             cCCCcHHHHHHHHh-cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          205 NIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       205 ~~~~~~~l~~~i~~-~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                          -.+.++.++. ..++|+  .++||| |++++.++.++|+|++.+|+.++.++
T Consensus       227 ----l~~av~~l~~~~~~v~i--eASGGI-t~eni~~~a~tGVD~IsvGslt~sa~  275 (285)
T 1o4u_A          227 ----VKDISRRIKDINPNVIV--EVSGGI-TEENVSLYDFETVDVISSSRLTLQEV  275 (285)
T ss_dssp             ----HHHHHHHHHHHCTTSEE--EEEECC-CTTTGGGGCCTTCCEEEEGGGTSSCC
T ss_pred             ----HHHHHHHhhccCCCceE--EEECCC-CHHHHHHHHHcCCCEEEEeHHHcCCC
Confidence                0122333332 124677  678999 69999999999999999999988765

>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*

Probab=98.14  E-value=5.6e-06  Score=75.10  Aligned_cols=94  Identities=14%  Similarity=0.162  Sum_probs=67.3

Q ss_pred             hHHHHHHHhcCCC-CcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhcc
Q 037779          127 ADEENHINKHNFR-VPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN  205 (310)
Q Consensus       127 ~~~~~~~~~~~~~-l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  205 (310)
                      .+.++.+++..+. ..+.++++|++|++.+.+.|+|+|++...  +                        ++.+      
T Consensus       169 ~~ai~~~r~~~~~~~~i~vev~tlee~~~A~~aGaD~I~ld~~--~------------------------~~~l------  216 (273)
T 2b7n_A          169 KSFLTHARKNLPFTAKIEIECESFEEAKNAMNAGADIVMCDNL--S------------------------VLET------  216 (273)
T ss_dssp             HHHHHHHGGGSCTTCCEEEEESSHHHHHHHHHHTCSEEEEETC--C------------------------HHHH------
T ss_pred             HHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHcCCCEEEECCC--C------------------------HHHH------
Confidence            4555666654333 68899999999999999999999998521  0                        1000      


Q ss_pred             CCCcHHHHHHHHh-cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          206 IAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       206 ~~~~~~l~~~i~~-~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                          .+..+.+.. ..++|+  .++||| +++++.++.++|+|++.+|+.++.++
T Consensus       217 ----~~~v~~l~~~~~~~~i--~AsGGI-~~~ni~~~~~aGaD~i~vGs~i~~a~  264 (273)
T 2b7n_A          217 ----KEIAAYRDAHYPFVLL--EASGNI-SLESINAYAKSGVDAISVGALIHQAT  264 (273)
T ss_dssp             ----HHHHHHHHHHCTTCEE--EEESSC-CTTTHHHHHTTTCSEEECTHHHHTCC
T ss_pred             ----HHHHHHhhccCCCcEE--EEECCC-CHHHHHHHHHcCCcEEEEcHHhcCCC
Confidence                112222322 234788  578999 79999999999999999999988654

>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A

Probab=98.11  E-value=1.2e-05  Score=71.53  Aligned_cols=52  Identities=17%  Similarity=0.278  Sum_probs=46.0

Q ss_pred             CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCH
Q 037779          208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDP  261 (310)
Q Consensus       208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp  261 (310)
                      ..+++++.+++..++||  ++.|||.+++++.++++.|||+|++|++++..++.
T Consensus        66 ~~~~~i~~i~~~~~ipv--i~~Ggi~~~~~~~~~l~~Gad~V~ig~~~l~dp~~  117 (247)
T 3tdn_A           66 YDTEMIRFVRPLTTLPI--IASGGAGKMEHFLEAFLRGADKVSINTAAVENPSL  117 (247)
T ss_dssp             CCHHHHHHHGGGCCSCE--EEESCCCSHHHHHHHHHTTCSEECCSHHHHHCTHH
T ss_pred             ccHHHHHHHHHhCCCCE--EEeCCCCCHHHHHHHHHcCCCeeehhhHHhhChHH
Confidence            45788889988888999  67899999999999999999999999999986653

>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1

Probab=98.06  E-value=1.9e-05  Score=72.31  Aligned_cols=91  Identities=19%  Similarity=0.142  Sum_probs=65.5

Q ss_pred             hhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhcc
Q 037779          126 PADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN  205 (310)
Q Consensus       126 ~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  205 (310)
                      ..+.++.+++..+...+.++++|.+|++.+.+.|+|+|++...                                     
T Consensus       195 i~~ai~~~r~~~~~~kI~vev~tlee~~eA~~aGaD~I~ld~~-------------------------------------  237 (296)
T 1qap_A          195 VRQAVEKAFWLHPDVPVEVEVENLDELDDALKAGADIIMLDNF-------------------------------------  237 (296)
T ss_dssp             HHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHTTCSEEEESSC-------------------------------------
T ss_pred             HHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHcCCCEEEECCC-------------------------------------
Confidence            3445555555333347889999999999999999999998521                                     


Q ss_pred             CCCcHHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          206 IAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       206 ~~~~~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                         +.+.++.+.+.  .++|+  .|+||| +++++.++.++|+|++.+|+.++.++
T Consensus       238 ---~~e~l~~~v~~~~~~~~I--~ASGGI-t~~~i~~~a~~GvD~isvGsli~~a~  287 (296)
T 1qap_A          238 ---NTDQMREAVKRVNGQARL--EVSGNV-TAETLREFAETGVDFISVGALTKHVR  287 (296)
T ss_dssp             ---CHHHHHHHHHTTCTTCCE--EECCCS-CHHHHHHHHHTTCSEEECSHHHHEEE
T ss_pred             ---CHHHHHHHHHHhCCCCeE--EEECCC-CHHHHHHHHHcCCCEEEEeHHHcCCC
Confidence               11112222222  25788  679999 79999999999999999999776543

>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}

Probab=98.05  E-value=0.00042  Score=62.78  Aligned_cols=165  Identities=18%  Similarity=0.217  Sum_probs=100.9

Q ss_pred             CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee------ccccc-------hHHHHH
Q 037779           43 VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK------ARIGH-------FVEAQI  109 (310)
Q Consensus        43 ~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k------d~i~~-------~~~~~~  109 (310)
                      .+++-+..++++||+.| .|.    +--..+|.  -+++..++.+++.+++||.+.      +|+-+       .++++.
T Consensus        47 ~s~~~a~~A~~gGAdRI-ELc----~~l~~GGl--TPS~g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~  119 (287)
T 3iwp_A           47 DSVESAVNAERGGADRI-ELC----SGLSEGGT--TPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRL  119 (287)
T ss_dssp             SSHHHHHHHHHHTCSEE-EEC----BCGGGTCB--CCCHHHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhCCCEE-EEC----CCCCCCCC--CCCHHHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHHHHHH
Confidence            45788999999999999 451    22223343  456889999999999998763      23321       136677


Q ss_pred             HHHcCCCeeeec----CC-CChhHHHHHHHhcCCCCcEEee-----cCCHHHHHH-HHHhCCCEEEEecCCCCCchHHHH
Q 037779          110 LEAIGVDYVDES----EV-LTPADEENHINKHNFRVPFVCG-----CRNLGESLR-RIREGAAMIRTKGEAGTGNIVEAV  178 (310)
Q Consensus       110 ~~~aGad~v~~~----~~-~~~~~~~~~~~~~~~~l~v~~~-----v~t~~ea~~-a~~~Gad~I~v~g~~~~~~~~~~~  178 (310)
                      +.++|||+|+..    +. +......+++...+ ++.+..-     +.++.++.. .+++|.+-|-+.|...+       
T Consensus       120 ~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~~a~-~l~vTFHRAFD~~~d~~~Ale~Li~lGvdrILTSG~~~~-------  191 (287)
T 3iwp_A          120 AKLYGADGLVFGALTEDGHIDKELCMSLMAICR-PLPVTFHRAFDMVHDPMAALETLLTLGFERVLTSGCDSS-------  191 (287)
T ss_dssp             HHHTTCSEEEECCBCTTSCBCHHHHHHHHHHHT-TSCEEECGGGGGCSCHHHHHHHHHHHTCSEEEECTTSSS-------
T ss_pred             HHHcCCCEEEEeeeCCCCCcCHHHHHHHHHHcC-CCcEEEECchhccCCHHHHHHHHHHcCCCEEECCCCCCC-------
Confidence            788999998832    21 34445555555422 2333321     234555443 44668877766543111       


Q ss_pred             HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEc
Q 037779          179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVG  252 (310)
Q Consensus       179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VG  252 (310)
                                                 .....+.++.+.+.  .+++|  ++.||| +++++.++++ +|++.+=..
T Consensus       192 ---------------------------a~~Gl~~Lk~Lv~~a~~rI~I--maGGGV-~~~Ni~~l~~~tG~~~~H~S  238 (287)
T 3iwp_A          192 ---------------------------ALEGLPLIKRLIEQAKGRIVV--MPGGGI-TDRNLQRILEGSGATEFHCS  238 (287)
T ss_dssp             ---------------------------TTTTHHHHHHHHHHHTTSSEE--EECTTC-CTTTHHHHHHHHCCSEEEEC
T ss_pred             ---------------------------hHHhHHHHHHHHHHhCCCCEE--EECCCc-CHHHHHHHHHhhCCCEEeEC
Confidence                                       01123444444332  35677  679999 5999999987 899887654

>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*

Probab=98.04  E-value=5.5e-05  Score=72.22  Aligned_cols=55  Identities=20%  Similarity=0.149  Sum_probs=46.4

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~  266 (310)
                      ++++++.+++..++||  |+.||| +++++.++++.| ||.|++|++++..++....++
T Consensus       307 ~~~~~~~vk~~~~iPv--i~~G~i-~~~~a~~~l~~g~aD~V~igR~~l~dP~l~~k~~  362 (402)
T 2hsa_B          307 EARLMRTLRNAYQGTF--ICSGGY-TRELGIEAVAQGDADLVSYGRLFISNPDLVMRIK  362 (402)
T ss_dssp             HHHHHHHHHHHCSSCE--EEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             hHHHHHHHHHHCCCCE--EEeCCC-CHHHHHHHHHCCCCceeeecHHHHhCchHHHHHH
Confidence            3566777888778999  678999 899999999987 999999999999888765543

>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...

Probab=98.03  E-value=6.2e-05  Score=66.39  Aligned_cols=47  Identities=17%  Similarity=0.348  Sum_probs=32.8

Q ss_pred             cCCCCCHH--HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCC
Q 037779          229 AGGVATPA--DAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSD  277 (310)
Q Consensus       229 ~GGI~t~~--di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~  277 (310)
                      ..||+ ++  +. +++++|+|.+++||+|++++||.+.++++++.++..-+
T Consensus       179 ~PGI~-~~g~~p-~~~~aGad~iVvGr~I~~a~dp~~a~~~~~~~~~~~~~  227 (228)
T 3m47_A          179 SPGVG-AQGGDP-GETLRFADAIIVGRSIYLADNPAAAAAGAIESIKDLLN  227 (228)
T ss_dssp             ECC-----------CGGGTCSEEEECHHHHTSSCHHHHHHHHHHHC-----
T ss_pred             ecCcC-cCCCCH-hHHHcCCCEEEECHHHhCCCCHHHHHHHHHHHHHHHhC
Confidence            48886 54  66 78899999999999999999999999999988875443

>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0

Probab=98.03  E-value=7.6e-05  Score=70.23  Aligned_cols=51  Identities=24%  Similarity=0.157  Sum_probs=41.4

Q ss_pred             HHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHH
Q 037779          213 VMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       213 ~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~  266 (310)
                      ++.+++..++||  |+.||| +++++.++++.| ||.|++|++++..+|....++
T Consensus       279 ~~~ik~~~~iPv--i~~Ggi-t~e~a~~~l~~G~aD~V~iGR~~ladPdl~~k~~  330 (361)
T 3gka_A          279 GQQLKAAFGGPF--IVNENF-TLDSAQAALDAGQADAVAWGKLFIANPDLPRRFK  330 (361)
T ss_dssp             HHHHHHHHCSCE--EEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             HHHHHHHcCCCE--EEeCCC-CHHHHHHHHHcCCccEEEECHHhHhCcHHHHHHH
Confidence            445555556899  568999 899999999987 999999999999888665443

>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*

Probab=98.02  E-value=1.7e-05  Score=72.16  Aligned_cols=95  Identities=15%  Similarity=0.093  Sum_probs=68.9

Q ss_pred             hhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhcc
Q 037779          126 PADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN  205 (310)
Q Consensus       126 ~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  205 (310)
                      ....++.+++..+..++.+++.|.+|++.+++.|+|+|.....                          +++.       
T Consensus       181 i~~av~~ar~~~~~~~I~Vev~t~eea~eal~aGaD~I~LDn~--------------------------~~~~-------  227 (284)
T 1qpo_A          181 VVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPEKPELILLDNF--------------------------AVWQ-------  227 (284)
T ss_dssp             HHHHHHHHHHHCTTSCEEEEESSHHHHHHHGGGCCSEEEEETC--------------------------CHHH-------
T ss_pred             HHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHcCCCEEEECCC--------------------------CHHH-------
Confidence            3556666666444458999999999999999999999998631                          1111       


Q ss_pred             CCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          206 IAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       206 ~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                         -.+.++.++.. .++++  .++||| |++++.++.++|+|.+.+|+.++.++
T Consensus       228 ---~~~~v~~l~~~~~~v~i--eaSGGI-t~~~i~~~a~tGVD~isvG~l~~~a~  276 (284)
T 1qpo_A          228 ---TQTAVQRRDSRAPTVML--ESSGGL-SLQTAATYAETGVDYLAVGALTHSVR  276 (284)
T ss_dssp             ---HHHHHHHHHHHCTTCEE--EEESSC-CTTTHHHHHHTTCSEEECGGGTSSBC
T ss_pred             ---HHHHHHHhhccCCCeEE--EEECCC-CHHHHHHHHhcCCCEEEECHHHcCCC
Confidence               11233333331 24566  679999 69999999999999999999888765

>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}

Probab=98.02  E-value=2.1e-05  Score=71.46  Aligned_cols=94  Identities=15%  Similarity=0.113  Sum_probs=69.2

Q ss_pred             ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779          125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK  204 (310)
Q Consensus       125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  204 (310)
                      +..+.++.+++..+..++.+++.|.+|++.+++.|+|+|.....                          +++.      
T Consensus       184 ~i~~Av~~ar~~~~~~~IeVEv~tl~ea~eAl~aGaD~I~LDn~--------------------------~~~~------  231 (287)
T 3tqv_A          184 GIAKAVTKAKKLDSNKVVEVEVTNLDELNQAIAAKADIVMLDNF--------------------------SGED------  231 (287)
T ss_dssp             CHHHHHHHHHHHCTTSCEEEEESSHHHHHHHHHTTCSEEEEESC--------------------------CHHH------
T ss_pred             CHHHHHHHHHhhCCCCcEEEEeCCHHHHHHHHHcCCCEEEEcCC--------------------------CHHH------
Confidence            35566677766666789999999999999999999999998521                          1110      


Q ss_pred             cCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          205 NIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       205 ~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                          -.+.++.+.  .++++  .++||| +++++.++.+.|+|.+.+|+.....+
T Consensus       232 ----l~~av~~~~--~~v~i--eaSGGI-t~~~i~~~a~tGVD~IsvGalt~sa~  277 (287)
T 3tqv_A          232 ----IDIAVSIAR--GKVAL--EVSGNI-DRNSIVAIAKTGVDFISVGAITKHIK  277 (287)
T ss_dssp             ----HHHHHHHHT--TTCEE--EEESSC-CTTTHHHHHTTTCSEEECSHHHHSBC
T ss_pred             ----HHHHHHhhc--CCceE--EEECCC-CHHHHHHHHHcCCCEEEEChhhcCCc
Confidence                011222222  24566  679999 69999999999999999998776654

>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}

Probab=98.00  E-value=7.7e-05  Score=70.24  Aligned_cols=50  Identities=20%  Similarity=0.104  Sum_probs=41.0

Q ss_pred             HHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHH
Q 037779          213 VMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRA  265 (310)
Q Consensus       213 ~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~  265 (310)
                      .+.+++..++||  |+.||| +++++.++++.| ||.|++|++++..+|....+
T Consensus       271 ~~~ik~~~~iPv--i~~Ggi-t~e~a~~~l~~g~aD~V~iGR~~lanPdl~~k~  321 (362)
T 4ab4_A          271 GPLIKEAFGGPY--IVNERF-DKASANAALASGKADAVAFGVPFIANPDLPARL  321 (362)
T ss_dssp             HHHHHHHHCSCE--EEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred             HHHHHHHCCCCE--EEeCCC-CHHHHHHHHHcCCccEEEECHHhHhCcHHHHHH
Confidence            445555556899  668999 899999999987 99999999999988866444

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=97.99  E-value=8e-05  Score=75.67  Aligned_cols=55  Identities=16%  Similarity=0.170  Sum_probs=47.2

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRA  265 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~  265 (310)
                      ..++...+++..++||  |+.|||.+++++.++++.| ||.|++|++++..+|....+
T Consensus       282 ~~~~~~~i~~~~~~pv--i~~G~i~~~~~a~~~l~~g~~d~v~~gR~~~~~P~~~~~~  337 (690)
T 3k30_A          282 QEEFVAGLKKLTTKPV--VGVGRFTSPDAMVRQIKAGILDLIGAARPSIADPFLPNKI  337 (690)
T ss_dssp             THHHHTTSGGGCSSCE--EECSCCCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred             cHHHHHHHHHHcCCeE--EEeCCCCCHHHHHHHHHCCCcceEEEcHHhHhCccHHHHH
Confidence            3567777888788999  6789999999999999987 99999999999988876554

>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*

Probab=97.99  E-value=4.2e-05  Score=72.41  Aligned_cols=51  Identities=18%  Similarity=0.165  Sum_probs=42.3

Q ss_pred             HHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHH
Q 037779          213 VMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       213 ~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~  266 (310)
                      ++.+++..++||  |+.||| +++++.++++.| ||.|++|++++..++....++
T Consensus       293 ~~~vr~~~~iPv--i~~G~i-~~~~a~~~l~~g~aD~V~~gR~~l~~P~l~~k~~  344 (376)
T 1icp_A          293 LVPMRKAYKGTF--IVAGGY-DREDGNRALIEDRADLVAYGRLFISNPDLPKRFE  344 (376)
T ss_dssp             SHHHHHHCCSCE--EEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             HHHHHHHcCCCE--EEeCCC-CHHHHHHHHHCCCCcEEeecHHHHhCccHHHHHH
Confidence            455566667899  678999 899999999987 999999999999888765543

>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A

Probab=97.98  E-value=1.2e-05  Score=73.91  Aligned_cols=93  Identities=16%  Similarity=0.203  Sum_probs=65.4

Q ss_pred             HHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccC
Q 037779          128 DEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNI  206 (310)
Q Consensus       128 ~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~  206 (310)
                      +.++.+++ .+....+.++++|++|+..+.+.|+|+|++...  +                        ++.+       
T Consensus       185 ~ai~~~r~~~~~~~~i~vev~tlee~~~A~~aGaD~I~ld~~--~------------------------~~~l-------  231 (299)
T 2jbm_A          185 KAVRAARQAADFALKVEVECSSLQEAVQAAEAGADLVLLDNF--K------------------------PEEL-------  231 (299)
T ss_dssp             HHHHHHHHHHTTTSCEEEEESSHHHHHHHHHTTCSEEEEESC--C------------------------HHHH-------
T ss_pred             HHHHHHHHhCCcCCeEEEecCCHHHHHHHHHcCCCEEEECCC--C------------------------HHHH-------
Confidence            34444444 333478899999999999999999999998521  0                        0000       


Q ss_pred             CCcHHHHHHHHh-cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          207 AAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       207 ~~~~~l~~~i~~-~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                         .+..+.+.. ..++|+  .++||| +++++.++.++|+|++.+|+.++.++
T Consensus       232 ---~~~v~~l~~~~~~~~I--~ASGGI-t~~ni~~~~~aGaD~i~vGs~i~~a~  279 (299)
T 2jbm_A          232 ---HPTATVLKAQFPSVAV--EASGGI-TLDNLPQFCGPHIDVISMGMLTQAAP  279 (299)
T ss_dssp             ---HHHHHHHHHHCTTSEE--EEESSC-CTTTHHHHCCTTCCEEECTHHHHSCC
T ss_pred             ---HHHHHHhhccCCCeeE--EEECCC-CHHHHHHHHHCCCCEEEEChhhcCCC
Confidence               112223332 234677  578999 79999999999999999999887654

>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A

Probab=97.96  E-value=9.3e-05  Score=65.86  Aligned_cols=58  Identities=24%  Similarity=0.387  Sum_probs=45.9

Q ss_pred             HHHHHhc-CCCCEEEEccCCCCCHH-----------HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779          213 VMQTKQL-GRLPVVHFAAGGVATPA-----------DAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       213 ~~~i~~~-~~iPVv~ia~GGI~t~~-----------di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                      ++.+++. .+.++  ++.|||+ ++           ++.+++++|+|.+++||+|++++||.+.++++++.++
T Consensus       173 i~~lr~~~~~~~i--~v~gGI~-~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~a~dp~~a~~~l~~~i~  242 (245)
T 1eix_A          173 AVRFKQVFGQEFK--LVTPGIR-PQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASLQ  242 (245)
T ss_dssp             HHHHHHHHCSSSE--EEECCBC-CTTCCCTTCCSCBCHHHHHHTTCSEEEECHHHHTSSSHHHHHHHHHHHTC
T ss_pred             HHHHHHhcCCCCE--EEECCcC-CCCCCccchhccCCHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHHHHH
Confidence            4444443 23455  4579996 67           7999999999999999999999999999999987654

>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A*

Probab=97.93  E-value=0.00014  Score=64.68  Aligned_cols=58  Identities=17%  Similarity=0.211  Sum_probs=46.2

Q ss_pred             HHHHHhcC-CCCEEEEccCCCCCHH-----------HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779          213 VMQTKQLG-RLPVVHFAAGGVATPA-----------DAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       213 ~~~i~~~~-~iPVv~ia~GGI~t~~-----------di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                      ++.+++.. ..++  ++.|||+ ++           ++.+++++|+|.+++||+|++++||.+.++++++.++
T Consensus       167 i~~lr~~~~~~~i--~V~gGI~-~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~a~dp~~a~~~l~~~i~  236 (246)
T 2yyu_A          167 AAFIKERCGASFL--AVTPGIR-FADDAAHDQVRVVTPRKARALGSDYIVIGRSLTRAADPLRTYARLQHEWN  236 (246)
T ss_dssp             HHHHHHHHCTTSE--EEECCCC-CCC-------CCCCHHHHHHHTCSEEEECHHHHTSSSHHHHHHHHHHHCC
T ss_pred             HHHHHHhcCCCCE--EEeCCcC-CCCCCcccccccCCHHHHHHcCCCEEEECHhhcCCCCHHHHHHHHHHHHH
Confidence            44555432 2344  4579996 66           7999999999999999999999999999999988765

>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*

Probab=97.93  E-value=2e-05  Score=71.22  Aligned_cols=50  Identities=16%  Similarity=0.195  Sum_probs=44.8

Q ss_pred             CcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          208 APYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       208 ~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                      ...++++.+++..  ++|+  +++|||+|++++++++++|||+|+|||++++.+
T Consensus       212 v~~e~V~~I~~~~~~~iPV--~vGGGIrs~Eda~~ll~aGAD~VVVGSAav~d~  263 (286)
T 3vk5_A          212 VPPEVVRHFRKGLGPDQVL--FVSGNVRSGRQVTEYLDSGADYVGFAGALEQPD  263 (286)
T ss_dssp             CCHHHHHHHHHHSCTTCEE--EEESSCCSHHHHHHHHHTTCSEEEESGGGSSTT
T ss_pred             CCHHHHHHHHHhcCCCCCE--EEEeCCCCHHHHHHHHHcCCCEEEECchhhcCC
Confidence            3578889998877  8999  679999999999999999999999999999853

>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}

Probab=97.92  E-value=4.7e-05  Score=69.55  Aligned_cols=94  Identities=19%  Similarity=0.178  Sum_probs=66.1

Q ss_pred             ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhc
Q 037779          125 TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAK  204 (310)
Q Consensus       125 ~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  204 (310)
                      +..+.++.+++..+..++.+++.|.+|++.+++.|+|+|.....                          +++.+     
T Consensus       195 ~i~~Av~~~r~~~p~~~ieVEvdtlde~~eAl~aGaD~I~LDn~--------------------------~~~~l-----  243 (298)
T 3gnn_A          195 GVGEALDAAFALNAEVPVQIEVETLDQLRTALAHGARSVLLDNF--------------------------TLDMM-----  243 (298)
T ss_dssp             CHHHHHHHHHHHC--CCCEEEESSHHHHHHHHHTTCEEEEEESC--------------------------CHHHH-----
T ss_pred             CHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHcCCCEEEECCC--------------------------CHHHH-----
Confidence            34566666666555678889999999999999999999998521                          11100     


Q ss_pred             cCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          205 NIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       205 ~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                           .+.++.+.  .++++  .++||| +++++.++.++|+|.+.||+..+.++
T Consensus       244 -----~~av~~i~--~~v~i--eaSGGI-~~~~i~~~a~tGVD~isvG~lt~sa~  288 (298)
T 3gnn_A          244 -----RDAVRVTE--GRAVL--EVSGGV-NFDTVRAIAETGVDRISIGALTKDVR  288 (298)
T ss_dssp             -----HHHHHHHT--TSEEE--EEESSC-STTTHHHHHHTTCSEEECGGGGTSCC
T ss_pred             -----HHHHHHhC--CCCeE--EEEcCC-CHHHHHHHHHcCCCEEEECCeecCCC
Confidence                 11222221  24455  789999 69999999999999999999776654

>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3

Probab=97.91  E-value=9.7e-05  Score=65.46  Aligned_cols=59  Identities=19%  Similarity=0.237  Sum_probs=47.0

Q ss_pred             HHHHHhcC-CCCEEEEccCCCCCHHHH-----------HHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          213 VMQTKQLG-RLPVVHFAAGGVATPADA-----------AMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       213 ~~~i~~~~-~iPVv~ia~GGI~t~~di-----------~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      ++.+++.. +.++  ++.|||+ ++..           .+++++|+|.+++||+|++++||.+.++++++.++.
T Consensus       166 i~~lr~~~~~~~i--~v~gGI~-~~~~~~~dq~rv~tp~~a~~aGad~iVvGr~I~~a~dp~~a~~~l~~~i~~  236 (239)
T 1dbt_A          166 AKAIYQAVSPSFL--TVTPGIR-MSEDAANDQVRVATPAIAREKGSSAIVVGRSITKAEDPVKAYKAVRLEWEG  236 (239)
T ss_dssp             HHHHTTTSCTTCE--EEECCBC-CTTSCCTTCSSCBCHHHHHHTTCSEEEECHHHHTSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCcE--EEeCCcC-CCCCCccceeccCCHHHHHHcCCCEEEEChhhcCCCCHHHHHHHHHHHHHH
Confidence            34455533 3455  4579996 6776           888999999999999999999999999999988763

>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}

Probab=97.90  E-value=5.4e-05  Score=69.00  Aligned_cols=93  Identities=14%  Similarity=0.098  Sum_probs=67.6

Q ss_pred             hhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhcc
Q 037779          126 PADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN  205 (310)
Q Consensus       126 ~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  205 (310)
                      ..+.++.+++..+..++.+++.|++|++.++++|+|+|.....                          +++.+      
T Consensus       194 i~~Av~~ar~~~p~~kIeVEv~tl~e~~eAl~aGaDiImLDn~--------------------------s~~~l------  241 (300)
T 3l0g_A          194 ITLAIQRLRKNLKNEYIAIECDNISQVEESLSNNVDMILLDNM--------------------------SISEI------  241 (300)
T ss_dssp             HHHHHHHHHHHSSSCCEEEEESSHHHHHHHHHTTCSEEEEESC--------------------------CHHHH------
T ss_pred             HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHcCCCEEEECCC--------------------------CHHHH------
Confidence            4566666766556789999999999999999999999988521                          11110      


Q ss_pred             CCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          206 IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       206 ~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                          .+.++.+.  .++.+  .++||| |++++.++.+.|+|.+.+|+....++
T Consensus       242 ----~~av~~~~--~~v~l--eaSGGI-t~~~i~~~A~tGVD~IsvGalthsa~  286 (300)
T 3l0g_A          242 ----KKAVDIVN--GKSVL--EVSGCV-NIRNVRNIALTGVDYISIGCITNSFQ  286 (300)
T ss_dssp             ----HHHHHHHT--TSSEE--EEESSC-CTTTHHHHHTTTCSEEECGGGTSSCC
T ss_pred             ----HHHHHhhc--CceEE--EEECCC-CHHHHHHHHHcCCCEEEeCccccCCC
Confidence                12222232  24445  689999 69999999999999999998766543

>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}

Probab=97.90  E-value=5.7e-05  Score=69.63  Aligned_cols=93  Identities=18%  Similarity=0.137  Sum_probs=66.6

Q ss_pred             hhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhcc
Q 037779          126 PADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN  205 (310)
Q Consensus       126 ~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  205 (310)
                      ..+.++.+++..+..++.+++.|.+|++.+++.|+|+|.....                          +++.+      
T Consensus       218 i~~Av~~ar~~~p~~kIeVEVdtldea~eAl~aGaD~I~LDn~--------------------------~~~~l------  265 (320)
T 3paj_A          218 IRQAISTAKQLNPGKPVEVETETLAELEEAISAGADIIMLDNF--------------------------SLEMM------  265 (320)
T ss_dssp             HHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHTTCSEEEEESC--------------------------CHHHH------
T ss_pred             HHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHcCCCEEEECCC--------------------------CHHHH------
Confidence            4556666666556678889999999999999999999998521                          11100      


Q ss_pred             CCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          206 IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       206 ~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                          .+.++.+.  .++++  .++||| +++++.++.++|+|.+.+|+....++
T Consensus       266 ----~~av~~l~--~~v~i--eaSGGI-t~~~I~~~a~tGVD~isvGalt~sa~  310 (320)
T 3paj_A          266 ----REAVKINA--GRAAL--ENSGNI-TLDNLKECAETGVDYISVGALTKHLK  310 (320)
T ss_dssp             ----HHHHHHHT--TSSEE--EEESSC-CHHHHHHHHTTTCSEEECTHHHHSBC
T ss_pred             ----HHHHHHhC--CCCeE--EEECCC-CHHHHHHHHHcCCCEEEECceecCCC
Confidence                11222222  24566  679999 69999999999999999999665443

>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*

Probab=97.89  E-value=1.5e-05  Score=72.96  Aligned_cols=94  Identities=16%  Similarity=0.101  Sum_probs=56.2

Q ss_pred             hHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhcc
Q 037779          127 ADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN  205 (310)
Q Consensus       127 ~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  205 (310)
                      .+.++.+++ .+....+.++++|++|+..+.+.|+|+|++...  +.                        +.       
T Consensus       186 ~~ai~~~r~~~~~~~~i~vev~tlee~~~A~~aGaD~I~ld~~--~~------------------------~~-------  232 (294)
T 3c2e_A          186 TNAVKNARAVCGFAVKIEVECLSEDEATEAIEAGADVIMLDNF--KG------------------------DG-------  232 (294)
T ss_dssp             HHHHHHHHHHHCTTSCEEEECSSSHHHHHHHHHTCSEEECCC--------------------------------------
T ss_pred             HHHHHHHHHhcCcCCeEEEecCCHHHHHHHHHcCCCEEEECCC--CH------------------------HH-------
Confidence            344444544 333478899999999999999999999997521  00                        00       


Q ss_pred             CCCcHHHHHHHHhc----CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          206 IAAPYDLVMQTKQL----GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       206 ~~~~~~l~~~i~~~----~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                         -.+..+.+...    .++|+  .++||| +++++.++.++|+|++.+|+.++.++
T Consensus       233 ---l~~~v~~l~~~~~g~~~v~I--~ASGGI-t~~ni~~~~~~GvD~i~vGs~i~~a~  284 (294)
T 3c2e_A          233 ---LKMCAQSLKNKWNGKKHFLL--ECSGGL-NLDNLEEYLCDDIDIYSTSSIHQGTP  284 (294)
T ss_dssp             -------------------CCEE--EEECCC-CC------CCCSCSEEECGGGTSSCC
T ss_pred             ---HHHHHHHhcccccCCCCeEE--EEECCC-CHHHHHHHHHcCCCEEEEechhcCCC
Confidence               01111222221    23677  678999 79999999999999999999987654

>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}

Probab=97.84  E-value=0.00069  Score=57.95  Aligned_cols=162  Identities=13%  Similarity=0.104  Sum_probs=94.8

Q ss_pred             CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc----chHHHHHHH-HcCCC
Q 037779           42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG----HFVEAQILE-AIGVD  116 (310)
Q Consensus        42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~----~~~~~~~~~-~aGad  116 (310)
                      +.+.+..+.+.+..+..+..+.   .++        ..-.+.++.++++...+++--|.+.    +.+-++-+. ..++|
T Consensus        16 vr~~~~l~~al~s~~~~ifll~---g~i--------~~l~~~v~~lk~~~K~v~Vh~Dli~Gls~d~~ai~fL~~~~~pd   84 (192)
T 3kts_A           16 AHNQKDMEKILELDLTYMVMLE---THV--------AQLKALVKYAQAGGKKVLLHADLVNGLKNDDYAIDFLCTEICPD   84 (192)
T ss_dssp             ESSSHHHHHHTTSSCCEEEECS---EET--------TTHHHHHHHHHHTTCEEEEEGGGEETCCCSHHHHHHHHHTTCCS
T ss_pred             ecCHHHHHHHHcCCCCEEEEec---CcH--------HHHHHHHHHHHHcCCeEEEecCchhccCCcHHHHHHHHhCCCCC
Confidence            3456777888887788774441   112        2225667788887776665444442    212222222 35888


Q ss_pred             eeeecCCCChhHHHHHHHhcCCC-C--cEEeecCCHHHHH-HHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceeccc
Q 037779          117 YVDESEVLTPADEENHINKHNFR-V--PFVCGCRNLGESL-RRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLR  192 (310)
Q Consensus       117 ~v~~~~~~~~~~~~~~~~~~~~~-l--~v~~~v~t~~ea~-~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~  192 (310)
                      +++.+    ....++.+++.+.- +  .++++..+.+-.. ...+..+|++-+.                         |
T Consensus        85 GIIsT----k~~~i~~Ak~~gL~tIqR~FliDS~al~~~~~~i~~~~PD~iEiL-------------------------P  135 (192)
T 3kts_A           85 GIIST----RGNAIMKAKQHKMLAIQRLFMIDSSAYNKGVALIQKVQPDCIELL-------------------------P  135 (192)
T ss_dssp             EEEES----CHHHHHHHHHTTCEEEEEEECCSHHHHHHHHHHHHHHCCSEEEEE-------------------------C
T ss_pred             EEEeC----cHHHHHHHHHCCCeEEEEEEEEEcchHHHHHHHHhhcCCCEEEEC-------------------------C
Confidence            88643    23455555554321 1  1122221212111 1223345554332                         1


Q ss_pred             ccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          193 NMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       193 ~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                      .              ...+.++.+++..++|+  ||+|+|.+.+++.+++++||++|..|+.-....
T Consensus       136 G--------------i~p~iI~~i~~~~~~Pi--IaGGlI~~~edv~~al~aGA~aVsTs~~~LW~~  186 (192)
T 3kts_A          136 G--------------IIPEQVQKMTQKLHIPV--IAGGLIETSEQVNQVIASGAIAVTTSNKHLWEG  186 (192)
T ss_dssp             T--------------TCHHHHHHHHHHHCCCE--EEESSCCSHHHHHHHHTTTEEEEEECCGGGGTT
T ss_pred             c--------------hhHHHHHHHHHhcCCCE--EEECCcCCHHHHHHHHHcCCeEEEeCCHHHhCc
Confidence            1              12357788888778999  789999999999999999999999999766644

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.83  E-value=0.00014  Score=74.35  Aligned_cols=56  Identities=16%  Similarity=0.186  Sum_probs=48.4

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~  266 (310)
                      .+.+.+.+++..++||  |+.|||.+++++.++++.| ||.|++|++++..++....++
T Consensus       279 ~~~~~~~i~~~~~~pv--i~~G~i~~~~~a~~~l~~g~aD~V~~gR~~l~~P~~~~~~~  335 (729)
T 1o94_A          279 TIPWVKLVKQVSKKPV--LGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQKVE  335 (729)
T ss_dssp             THHHHHHHHTTCSSCE--ECCSCCCCHHHHHHHHHTTSCSBEEESHHHHHCTTHHHHHH
T ss_pred             cHHHHHHHHHHCCCEE--EEeCCCCCHHHHHHHHHCCCCCEEEeCchhhcCchHHHHHH
Confidence            4677888888888999  7899999999999999987 999999999999888765443

>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}

Probab=97.82  E-value=0.00024  Score=64.49  Aligned_cols=32  Identities=25%  Similarity=0.365  Sum_probs=26.6

Q ss_pred             CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779          220 GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       220 ~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs  253 (310)
                      .++||  .++|||.|.+++.+++++||+-+-..+
T Consensus       233 ~~v~V--KAAGGIrt~edAl~mi~aGA~RiGtS~  264 (288)
T 3oa3_A          233 SETRV--KASGGIRTIEDCVKMVRAGAERLGASA  264 (288)
T ss_dssp             SCCEE--EEESSCCSHHHHHHHHHTTCSEEEESC
T ss_pred             CCceE--EEeCCCCCHHHHHHHHHcCCceeehhh
Confidence            46788  579999999999999999999554444

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=97.80  E-value=7.9e-05  Score=72.81  Aligned_cols=128  Identities=18%  Similarity=0.206  Sum_probs=76.7

Q ss_pred             HHHHHHHHcCCCeeee-cCCCChh---HHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHH
Q 037779          105 VEAQILEAIGVDYVDE-SEVLTPA---DEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVR  179 (310)
Q Consensus       105 ~~~~~~~~aGad~v~~-~~~~~~~---~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~  179 (310)
                      +.+..+.+.|+|.+.. ...-...   +.++.++.. .++++++ ++.+.+.+..+.  |+|.|.+ |...+. +...  
T Consensus       231 ~~a~~l~~~gvd~lvvdta~G~~~~~L~~I~~l~~~-~~vpvi~k~v~~~~~a~~l~--G~d~v~v-g~g~g~-~~~~--  303 (486)
T 2cu0_A          231 KRAIELDKAGVDVIVVDTAHAHNLKAIKSMKEMRQK-VDADFIVGNIANPKAVDDLT--FADAVKV-GIGPGS-ICTT--  303 (486)
T ss_dssp             HHHHHHHHTTCSEEEEECSCCCCHHHHHHHHHHHHT-CCSEEEEEEECCHHHHTTCT--TSSEEEE-CSSCST-TBCH--
T ss_pred             HHHHHHHHhcCCceEEEecCCcEeehhhHHHHHHHH-hCCccccCCcCCHHHHHHhh--CCCeEEE-eeeecc-ceee--
Confidence            4566778899998752 2211122   223444443 3677777 477887776666  9999998 332221 1000  


Q ss_pred             HHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          180 HVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       180 ~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                               |.+.....       +. ......++.+.+..++||  |++|||.+..|+.+++.+|||+|++|+.|..+
T Consensus       304 ---------r~~~~~g~-------~~-~~~l~~~~~~~~~~~vpV--ia~GGi~~~~di~kalalGA~~v~~g~~~~~~  363 (486)
T 2cu0_A          304 ---------RIVAGVGV-------PQ-ITAVAMVADRAQEYGLYV--IADGGIRYSGDIVKAIAAGADAVMLGNLLAGT  363 (486)
T ss_dssp             ---------HHHTCCCC-------CH-HHHHHHHHHHHHHHTCEE--EEESCCCSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred             ---------eEEeecCc-------ch-HHHHHHHHHHHHHcCCcE--EecCCCCCHHHHHHHHHcCCCceeeChhhhcC
Confidence                     00000000       00 011223333333346899  78999999999999999999999999999975

>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A

Probab=97.80  E-value=0.00033  Score=67.69  Aligned_cols=219  Identities=18%  Similarity=0.203  Sum_probs=131.2

Q ss_pred             ccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc--CcceEeeccccchHHHHHHHHcCC
Q 037779           38 VIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV--TIPVMAKARIGHFVEAQILEAIGV  115 (310)
Q Consensus        38 ~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~--~lPv~~kd~i~~~~~~~~~~~aGa  115 (310)
                      .+.++.+.+.++.+.+.|++.|. .|+  -+.+.|.     .+++...++...+  +++++.-.++.+.+++..+.++ +
T Consensus       160 ~LvEvh~~eE~~~A~~lga~iIG-inn--r~L~t~~-----~dl~~~~~L~~~ip~~~~vIaEsGI~t~edv~~~~~~-a  230 (452)
T 1pii_A          160 VLTEVSNEEEQERAIALGAKVVG-INN--RDLRDLS-----IDLNRTRELAPKLGHNVTVISESGINTYAQVRELSHF-A  230 (452)
T ss_dssp             EEEEECSHHHHHHHHHTTCSEEE-EES--EETTTTE-----ECTHHHHHHHHHHCTTSEEEEESCCCCHHHHHHHTTT-C
T ss_pred             EEEEeCCHHHHHHHHHCCCCEEE-EeC--CCCCCCC-----CCHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHHHh-C
Confidence            35677888999999999999873 331  1122221     2355666666554  6778887888777888889999 9


Q ss_pred             Ceee-ecCCC---ChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchH--HH------------
Q 037779          116 DYVD-ESEVL---TPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIV--EA------------  177 (310)
Q Consensus       116 d~v~-~~~~~---~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~--~~------------  177 (310)
                      |.++ ++..+   .+....+.+..   +..=+|++++++++..+.++|+|++++.-...++..+  +.            
T Consensus       231 ~avLVGealmr~~d~~~~~~~l~~---~~~KICGit~~eda~~a~~~Gad~iGfIf~~~SpR~V~~~~a~~i~~~~~v~~  307 (452)
T 1pii_A          231 NGFLIGSALMAHDDLHAAVRRVLL---GENKVCGLTRGQDAKAAYDAGAIYGGLIFVATSPRCVNVEQAQEVMAAAPLQY  307 (452)
T ss_dssp             SEEEECHHHHTCSCHHHHHHHHHH---CSCEECCCCSHHHHHHHHHHTCSEEEEECCTTCTTBCCHHHHHHHHHHCCCEE
T ss_pred             CEEEEcHHHcCCcCHHHHHHHHHH---HhccccCCCcHHHHHHHHhcCCCEEEeecCCCCCCCCCHHHHHHHHhcCCCCE
Confidence            9998 33222   34444443332   3456789999999999999999999864111222111  11            


Q ss_pred             ------------HHHHHHhhcceecccc-----------------------------cC------chhH-Hhh---hccC
Q 037779          178 ------------VRHVRSVMGDIRVLRN-----------------------------MD------DDEV-FTF---AKNI  206 (310)
Q Consensus       178 ------------~~~~~~~~~~~~~l~~-----------------------------~~------~d~~-~~~---~~~~  206 (310)
                                  .+.++++.-+...+..                             +.      .|.. +|.   ..+.
T Consensus       308 VgVFvn~~~~~i~~~~~~~~ld~vQLHG~E~~~~~~~l~~~~p~~~~iika~~v~~~~~~~~~~~~d~~LlD~~~GGtG~  387 (452)
T 1pii_A          308 VGVFRNHDIADVVDKAKVLSLAAVQLHGNEEQLYIDTLREALPAHVAIWKALSVGETLPAREFQHVDKYVLDNGQGGSGQ  387 (452)
T ss_dssp             EEEESSCCHHHHHHHHHHHTCSEEEECSCCCHHHHHHHHHHSCTTSEEEEEEECSSSCCCCCCTTCCEEEEESCSCCSSC
T ss_pred             EEEEeCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccCCCcEEEEEecCCccchhhhhcccEEEecCCCCCCCC
Confidence                        1111111111000100                             00      0000 110   0111


Q ss_pred             CCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC---CHHHHHHHHHHHHHcC
Q 037779          207 AAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG---DPVRRARAIVQAVTNY  275 (310)
Q Consensus       207 ~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~---dp~~~~~~~~~~~~~~  275 (310)
                      .-+|.+++   .....|+  +.+||+ +|+|+.++++.|+.||=|.|.+=.++   | ...+++|.+.++.|
T Consensus       388 ~fdW~~l~---~~~~~p~--iLAGGL-~p~NV~~ai~~~p~gvDvsSGVE~~pG~KD-~~ki~~f~~~~r~~  452 (452)
T 1pii_A          388 RFDWSLLN---GQSLGNV--LLAGGL-GADNCVEAAQTGCAGLDFNSAVESQPGIKD-ARLLASVFQTLRAY  452 (452)
T ss_dssp             CCCGGGGT---TSCCTTE--EEESSC-CTTTHHHHHTTCCSEEEECGGGEEETTEEC-HHHHHHHHHHHHCC
T ss_pred             ccCHHHhh---cccCCcE--EEEcCC-CHHHHHHHHhcCCCEEEeCCceeCCCCCCC-HHHHHHHHHHHhhC
Confidence            22455432   2235688  458999 69999888889999999999997542   4 45678888887754

>3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A

Probab=97.76  E-value=0.00021  Score=62.45  Aligned_cols=60  Identities=25%  Similarity=0.388  Sum_probs=47.8

Q ss_pred             HHHHHhc-CCCCEEEEccCCCCCHH--HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCC
Q 037779          213 VMQTKQL-GRLPVVHFAAGGVATPA--DAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYS  276 (310)
Q Consensus       213 ~~~i~~~-~~iPVv~ia~GGI~t~~--di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~  276 (310)
                      ++.+++. .+ .+  +..+||+ ++  +..++++.|+|-++||+.|++++||.+.++++++.++.+-
T Consensus       142 ~~~ir~~~~~-f~--~v~pGI~-~~g~~~~~a~~~Gad~iVvGr~I~~a~dp~~a~~~i~~~i~~~~  204 (215)
T 3ve9_A          142 ISRVKGDFPD-KL--VISPGVG-TQGAKPGIALCHGADYEIVGRSVYQSADPVRKLEEIVRSQEEVL  204 (215)
T ss_dssp             HHHHHHHCTT-SE--EEECCTT-STTCCTTHHHHTTCSEEEECHHHHTSSSHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhCCC-cE--EEcCCCC-cCcCCHHHHHHcCCCEEEeCHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            3445543 33 33  3479996 66  7888999999999999999999999999999999987643

>3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp}

Probab=97.73  E-value=0.00076  Score=61.75  Aligned_cols=46  Identities=22%  Similarity=0.366  Sum_probs=40.3

Q ss_pred             ccCCCCCHH-----------HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          228 AAGGVATPA-----------DAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       228 a~GGI~t~~-----------di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      +.+||. ++           ++.+++++|+|.+++||+|++++||.+.++++++.++.
T Consensus       196 VTPGIr-~qG~~~~DQ~Rv~t~~~a~~aGAd~iVvGr~I~~a~dp~~a~~~i~~~i~~  252 (303)
T 3ru6_A          196 LTPGIR-PFGETNDDQKRVANLAMARENLSDYIVVGRPIYKNENPRAVCEKILNKIHR  252 (303)
T ss_dssp             EECCCC-TTC--------CCSHHHHHHTTCSEEEECHHHHTSSCHHHHHHHHHHHHC-
T ss_pred             ECCCcC-cccCCcccccccCCHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHh
Confidence            469996 44           57788899999999999999999999999999998876

>4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus}

Probab=97.71  E-value=0.001  Score=58.35  Aligned_cols=46  Identities=17%  Similarity=0.419  Sum_probs=40.5

Q ss_pred             ccCCCCCHH--HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          228 AAGGVATPA--DAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       228 a~GGI~t~~--di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      ...||+ ++  +..++++.|+|.++||+.|++++||.+.++++++.++.
T Consensus       162 vtPGI~-~~g~tp~~a~~~Gad~iVVGR~I~~A~dP~~aa~~i~~~i~~  209 (222)
T 4dbe_A          162 VSPGMG-SQGGSYGDAVCAGADYEIIGRSIYNAGNPLTALRTINKIIED  209 (222)
T ss_dssp             EECCBS-TTSBCTTHHHHHTCSEEEECHHHHTSSSHHHHHHHHHHHHHH
T ss_pred             EcCCcc-cCccCHHHHHHcCCCEEEECHHhcCCCCHHHHHHHHHHHHHH
Confidence            469996 55  67788899999999999999999999999999998874

>1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3

Probab=97.70  E-value=0.00022  Score=62.19  Aligned_cols=54  Identities=11%  Similarity=0.123  Sum_probs=38.4

Q ss_pred             HHHHhcCCCCEEEEccCCCCCHHH----------HHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779          214 MQTKQLGRLPVVHFAAGGVATPAD----------AAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV  272 (310)
Q Consensus       214 ~~i~~~~~iPVv~ia~GGI~t~~d----------i~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~  272 (310)
                      +.+++....|++   .+||+ ++.          ..+ +++|+|.++||+.|++++||.+.++++++.+
T Consensus       149 ~~ir~~~~~~~v---~pGI~-~~~~~~dq~rv~t~~~-i~aGad~iVvGR~I~~a~dP~~aa~~i~~~i  212 (213)
T 1vqt_A          149 KALREKIKGKIL---VPGIR-MEVKADDQKDVVTLEE-MKGIANFAVLGREIYLSENPREKIKRIKEMR  212 (213)
T ss_dssp             HHHTTTCCSCEE---ECCBC----------CCBCHHH-HTTTCSEEEESHHHHTSSCHHHHHHHHTC--
T ss_pred             HHHHHHCCCCEE---ECCCC-CCCCccchhhcCCHHH-HHCCCCEEEEChhhcCCCCHHHHHHHHHHHh
Confidence            344444333543   48995 544          578 8999999999999999999999999887654

>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A

Probab=97.69  E-value=0.0048  Score=54.88  Aligned_cols=167  Identities=19%  Similarity=0.202  Sum_probs=98.6

Q ss_pred             CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeec------cccc-------hHHHHH
Q 037779           43 VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKA------RIGH-------FVEAQI  109 (310)
Q Consensus        43 ~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd------~i~~-------~~~~~~  109 (310)
                      .+++-+..+.++||+.| -|.   ... .-+|-  -++...++.+++.+++||.+..      |.-+       .++++.
T Consensus         9 ~s~~~a~~A~~~GAdRI-ELc---~~L-~~GGl--TPS~g~i~~~~~~~~ipv~vMIRPR~GdF~Ys~~E~~~M~~Di~~   81 (256)
T 1twd_A            9 YSMECALTAQQNGADRV-ELC---AAP-KEGGL--TPSLGVLKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRT   81 (256)
T ss_dssp             SSHHHHHHHHHTTCSEE-EEC---BCG-GGTCB--CCCHHHHHHHHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCEE-EEc---CCc-ccCCC--CCCHHHHHHHHHHcCCceEEEECCCCCCCcCCHHHHHHHHHHHHH
Confidence            45788999999999998 452   112 23343  4668899999999999987742      3211       135566


Q ss_pred             HHHcCCCeeee---c-CC-CChhHHHHHHHhcCCCCcEEe-----ecCCHHHHH-HHHHhCCCEEEEecCCCCCchHHHH
Q 037779          110 LEAIGVDYVDE---S-EV-LTPADEENHINKHNFRVPFVC-----GCRNLGESL-RRIREGAAMIRTKGEAGTGNIVEAV  178 (310)
Q Consensus       110 ~~~aGad~v~~---~-~~-~~~~~~~~~~~~~~~~l~v~~-----~v~t~~ea~-~a~~~Gad~I~v~g~~~~~~~~~~~  178 (310)
                      +.++|+|.+..   + +. +..+...+.+...+ ++++..     .+.++.++. ...++|.+-|-+.|...+       
T Consensus        82 ~~~~GadGvV~G~Lt~dg~iD~~~~~~Li~~a~-~~~vTFHRAfD~~~d~~~ale~L~~lG~~rILTSG~~~~-------  153 (256)
T 1twd_A           82 VRELGFPGLVTGVLDVDGNVDMPRMEKIMAAAG-PLAVTFHRAFDMCANPLYTLNNLAELGIARVLTSGQKSD-------  153 (256)
T ss_dssp             HHHTTCSEEEECCBCTTSSBCHHHHHHHHHHHT-TSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEECTTSSS-------
T ss_pred             HHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhC-CCcEEEECchhccCCHHHHHHHHHHcCCCEEECCCCCCC-------
Confidence            77799999872   1 11 22333333333211 233322     134555443 344667765555432110       


Q ss_pred             HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779          179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs  253 (310)
                                                 .....+.++.+.+... .+.+++.||| +++++.+++++|+..+=.++
T Consensus       154 ---------------------------a~~g~~~L~~Lv~~a~-~i~Im~GgGv-~~~Ni~~l~~tGv~e~H~Sa  199 (256)
T 1twd_A          154 ---------------------------ALQGLSKIMELIAHRD-APIIMAGAGV-RAENLHHFLDAGVLEVHSSA  199 (256)
T ss_dssp             ---------------------------TTTTHHHHHHHHTSSS-CCEEEEESSC-CTTTHHHHHHHTCSEEEECC
T ss_pred             ---------------------------HHHHHHHHHHHHHhhC-CcEEEecCCc-CHHHHHHHHHcCCCeEeECC
Confidence                                       1113445555544333 3334789999 59999999988998887654

>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}

Probab=97.65  E-value=0.0003  Score=62.24  Aligned_cols=32  Identities=31%  Similarity=0.354  Sum_probs=26.5

Q ss_pred             CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779          220 GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       220 ~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs  253 (310)
                      .+++|  -++|||.|.+++.+++++||+.+-..+
T Consensus       199 ~~v~V--KasGGIrt~~da~~~i~aGA~riGtS~  230 (239)
T 3ngj_A          199 DKALV--KAAGGIRTFDDAMKMINNGASRIGASA  230 (239)
T ss_dssp             GGSEE--EEESSCCSHHHHHHHHHTTEEEEEESC
T ss_pred             CCceE--EEeCCCCCHHHHHHHHHhcccceeccc
Confidence            35788  579999999999999999999655544

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=97.64  E-value=0.00012  Score=64.71  Aligned_cols=50  Identities=26%  Similarity=0.371  Sum_probs=43.3

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD  260 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d  260 (310)
                      ..++++.+++..++|+  ++.|||.+++++.++++.|||+|++|+.++..++
T Consensus        63 ~~~~i~~i~~~~~iPv--i~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~~p~  112 (252)
T 1ka9_F           63 LLDVVARVAERVFIPL--TVGGGVRSLEDARKLLLSGADKVSVNSAAVRRPE  112 (252)
T ss_dssp             HHHHHHHHHTTCCSCE--EEESSCCSHHHHHHHHHHTCSEEEECHHHHHCTH
T ss_pred             cHHHHHHHHHhCCCCE--EEECCcCCHHHHHHHHHcCCCEEEEChHHHhCcH
Confidence            3567778887778999  5689999999999999999999999999998553

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=97.61  E-value=0.00025  Score=63.30  Aligned_cols=48  Identities=19%  Similarity=0.261  Sum_probs=41.2

Q ss_pred             CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                      ...+.++.+++..++|+  ++.|||++++++.++++.|||+|++|+.++.
T Consensus        61 ~~~~~i~~i~~~~~iPv--i~~ggi~~~~~i~~~~~~Gad~v~lg~~~~~  108 (266)
T 2w6r_A           61 YDTEMIRFVRPLTTLPI--IASGGAGKMEHFLEAFLAGADKALAASVFHF  108 (266)
T ss_dssp             CCHHHHHHHGGGCCSCE--EEESCCCSTHHHHHHHHHTCSEEECCCCC--
T ss_pred             ccHHHHHHHHHhcCCCE--EEECCCCCHHHHHHHHHcCCcHhhhhHHHHh
Confidence            35778888888778999  5689999999999999999999999999993

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*

Probab=97.58  E-value=0.00044  Score=60.60  Aligned_cols=36  Identities=33%  Similarity=0.506  Sum_probs=29.4

Q ss_pred             CCCCEEEEccCCCCCHHHHHHHHHcCCC--EEEEcccccc
Q 037779          220 GRLPVVHFAAGGVATPADAAMMMQLGCD--GVFVGSGVFK  257 (310)
Q Consensus       220 ~~iPVv~ia~GGI~t~~di~~~~~~Gad--gV~VGsai~~  257 (310)
                      .++||  -++|||.|.+++.+++++|++  |+..|..|++
T Consensus       175 ~~v~V--kaaGGirt~~~al~~i~aGa~RiG~S~g~~I~~  212 (220)
T 1ub3_A          175 GRAQV--KAAGGIRDRETALRMLKAGASRLGTSSGVALVA  212 (220)
T ss_dssp             TSSEE--EEESSCCSHHHHHHHHHTTCSEEEETTHHHHHC
T ss_pred             CCCeE--EEECCCCCHHHHHHHHHCCCcccchhHHHHHHH
Confidence            46888  468999999999999999999  6666666554

>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*

Probab=97.57  E-value=0.00073  Score=60.47  Aligned_cols=32  Identities=34%  Similarity=0.445  Sum_probs=26.0

Q ss_pred             CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779          220 GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       220 ~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs  253 (310)
                      .+++|  -++|||.|.+++.+++++||+-+...+
T Consensus       215 ~~v~V--KaAGGIrt~~~al~mi~aGA~RiGtS~  246 (260)
T 3r12_A          215 DEMGV--KASGGIRTFEDAVKMIMYGADRIGTSS  246 (260)
T ss_dssp             TTSEE--EEESSCCSHHHHHHHHHTTCSEEEESC
T ss_pred             CCceE--EEeCCCCCHHHHHHHHHcCCceeecch
Confidence            46788  569999999999999999999544433

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=97.57  E-value=0.00022  Score=63.17  Aligned_cols=50  Identities=18%  Similarity=0.293  Sum_probs=43.1

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD  260 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d  260 (310)
                      ..+.++.+++..++|+  ++.|||.+++++.+++++|||+|++|+..+..++
T Consensus        62 ~~~~i~~i~~~~~ipv--i~~ggI~~~~~~~~~~~~Gad~V~lg~~~l~~p~  111 (253)
T 1thf_D           62 MLELVEKVAEQIDIPF--TVGGGIHDFETASELILRGADKVSINTAAVENPS  111 (253)
T ss_dssp             HHHHHHHHHTTCCSCE--EEESSCCSHHHHHHHHHTTCSEEEESHHHHHCTH
T ss_pred             cHHHHHHHHHhCCCCE--EEeCCCCCHHHHHHHHHcCCCEEEEChHHHhChH
Confidence            4567777877778999  5689999999999999999999999999998543

>3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus}

Probab=97.55  E-value=0.0014  Score=58.72  Aligned_cols=49  Identities=22%  Similarity=0.335  Sum_probs=42.0

Q ss_pred             ccCCCCCHH-----------HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCC
Q 037779          228 AAGGVATPA-----------DAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSD  277 (310)
Q Consensus       228 a~GGI~t~~-----------di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~  277 (310)
                      ...||. +.           +..++.++|+|.+++||+|++++||.+.++++++.+++|..
T Consensus       182 vtPGIr-~~g~~~gDQ~Rv~T~~~a~~aGad~iVvGr~I~~a~dp~~a~~~i~~~~~~~~~  241 (259)
T 3tfx_A          182 VTPGIR-PAGNAKDDQSRVATPKMAKEWGSSAIVVGRPITLASDPKAAYEAIKKEFNAENL  241 (259)
T ss_dssp             EECCCC-CC-----------CHHHHHHTTCSEEEECHHHHTSSSHHHHHHHHHHHHTCTTC
T ss_pred             EcCCcC-CCCCCcCCccccCCHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            368886 43           27788999999999999999999999999999999887653

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=97.48  E-value=0.00015  Score=64.04  Aligned_cols=52  Identities=15%  Similarity=0.134  Sum_probs=44.0

Q ss_pred             CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 037779          208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV  262 (310)
Q Consensus       208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~  262 (310)
                      ..++.++.++ ..++|+  ++.|||.+++++.++++.|||+|++|+.++..++..
T Consensus        61 ~~~~~i~~i~-~~~ipv--i~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~~p~~~  112 (241)
T 1qo2_A           61 ENLPVLEKLS-EFAEHI--QIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFL  112 (241)
T ss_dssp             TTHHHHHHGG-GGGGGE--EEESSCCSHHHHHHHHHTTCCEEEECHHHHHCTTHH
T ss_pred             hhHHHHHHHH-hcCCcE--EEECCCCCHHHHHHHHHCCCCEEEECchHhhChHHH
Confidence            3567777777 567899  568999999999999999999999999999876543

>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A

Probab=97.47  E-value=0.00035  Score=61.59  Aligned_cols=32  Identities=34%  Similarity=0.475  Sum_probs=25.9

Q ss_pred             CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779          220 GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       220 ~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs  253 (310)
                      .+++|  -++|||.|.+++.+++++||+-+-..+
T Consensus       189 ~~v~V--KaaGGIrt~~~a~~~i~aGa~RiGtS~  220 (231)
T 3ndo_A          189 ERLGV--KASGGIRTAEQAAAMLDAGATRLGLSG  220 (231)
T ss_dssp             TTSEE--EEESSCCSHHHHHHHHHTTCSEEEESS
T ss_pred             CCceE--EEeCCCCCHHHHHHHHHhcchhcccch
Confidence            46788  568999999999999999999544433

>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*

Probab=97.47  E-value=0.0004  Score=75.25  Aligned_cols=119  Identities=16%  Similarity=0.153  Sum_probs=73.9

Q ss_pred             cCCCeee---ecCCCChh---HHHHHHHhcCCCCcEEee----cCCHHHHHHHHHhCCCEEEEecCCCCCc--hHHHHHH
Q 037779          113 IGVDYVD---ESEVLTPA---DEENHINKHNFRVPFVCG----CRNLGESLRRIREGAAMIRTKGEAGTGN--IVEAVRH  180 (310)
Q Consensus       113 aGad~v~---~~~~~~~~---~~~~~~~~~~~~l~v~~~----v~t~~ea~~a~~~Gad~I~v~g~~~~~~--~~~~~~~  180 (310)
                      .|.+.+.   .++..+++   ++++.++...++.++++.    +....++..+.++|+|+|.+.|..+++.  .....  
T Consensus       996 ~Gv~lisP~~~~d~~s~edl~~~I~~Lk~~~~~~PV~VKlv~~~gi~~~A~~a~kAGAD~IvVsG~eGGTgasp~~~~-- 1073 (1520)
T 1ofd_A          996 PGVTLISPPPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSI-- 1073 (1520)
T ss_dssp             TTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHH--
T ss_pred             CCCCeeCCCCCcCcCCHHHHHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHHHcCCCEEEEeCCCCccCCCcchhh--
Confidence            4556553   11233444   344555554445665554    2346688888999999999987643221  10000  


Q ss_pred             HHHhhcceecccccCchhHHhhhccCCC-cHHHHHHHHhc-------CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEc
Q 037779          181 VRSVMGDIRVLRNMDDDEVFTFAKNIAA-PYDLVMQTKQL-------GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG  252 (310)
Q Consensus       181 ~~~~~~~~~~l~~~~~d~~~~~~~~~~~-~~~l~~~i~~~-------~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VG  252 (310)
                                             .+.+. ....+..+.+.       .++||  |++|||.+..|+.+++.+||++|.+|
T Consensus      1074 -----------------------~~~GlPt~~aL~ev~~al~~~glr~~IpV--IAdGGIrtG~DVakALaLGAdaV~iG 1128 (1520)
T 1ofd_A         1074 -----------------------KHAGSPWELGVTEVHRVLMENQLRDRVLL--RADGGLKTGWDVVMAALMGAEEYGFG 1128 (1520)
T ss_dssp             -----------------------HHBCCCHHHHHHHHHHHHHHTTCGGGCEE--EEESSCCSHHHHHHHHHTTCSEEECS
T ss_pred             -----------------------cCCchhHHHHHHHHHHHHHhcCCCCCceE--EEECCCCCHHHHHHHHHcCCCeeEEc
Confidence                                   00111 23344444332       25888  77999999999999999999999999


Q ss_pred             cccccC
Q 037779          253 SGVFKS  258 (310)
Q Consensus       253 sai~~~  258 (310)
                      ++++.+
T Consensus      1129 TafL~a 1134 (1520)
T 1ofd_A         1129 SIAMIA 1134 (1520)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998664

>3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum}

Probab=97.45  E-value=0.0011  Score=60.54  Aligned_cols=60  Identities=17%  Similarity=0.280  Sum_probs=45.7

Q ss_pred             HHHHhcCCCCEEEEccCCCC-CHHH----HHHHHH-cCCCEEEEcccccc--CCCHHHHHHHHHHHHHc
Q 037779          214 MQTKQLGRLPVVHFAAGGVA-TPAD----AAMMMQ-LGCDGVFVGSGVFK--SGDPVRRARAIVQAVTN  274 (310)
Q Consensus       214 ~~i~~~~~iPVv~ia~GGI~-t~~d----i~~~~~-~GadgV~VGsai~~--~~dp~~~~~~~~~~~~~  274 (310)
                      +.+.+.+.+||+ ++.|+-. +.++    ++.+++ .|+.|+++|+.+++  .+||.++++++...++.
T Consensus       230 ~~Vv~a~~vPVV-iaGG~k~~~~~e~L~~v~~A~~~aGa~Gv~vGRNIfQ~~~~dp~~~v~al~~iVH~  297 (307)
T 3fok_A          230 ERVMESTTMPTL-LLGGEGGNDPDATFASWEHALTLPGVRGLTVGRTLLYPQDGDVAAAVDTAARLVHT  297 (307)
T ss_dssp             HHHGGGCSSCEE-EECCSCC--CHHHHHHHHHHTTSTTEEEEEECTTTSSCSSSCHHHHHHHHHHHHCC
T ss_pred             HHHHHhCCCCEE-EeCCCCCCCHHHHHHHHHHHHHhCCCeEEeechhhccCCCCCHHHHHHHHHHHHHh
Confidence            455566679997 4555542 3333    456667 69999999999999  99999999999998873

>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*

Probab=97.45  E-value=7.6e-05  Score=69.93  Aligned_cols=76  Identities=16%  Similarity=0.114  Sum_probs=53.3

Q ss_pred             HHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccc-ccCCCHHHHHHHHHHHHHcCCChhhHHhhhhc
Q 037779          210 YDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGV-FKSGDPVRRARAIVQAVTNYSDPDVLAEVSCG  287 (310)
Q Consensus       210 ~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai-~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (310)
                      .+++..+.+. .++||  |..|||.|++|+.+.+.+||+.|+|||++ ++.+..   ++++.+.+..+.....+..+++.
T Consensus       265 ~~~v~~~~~~~~~~pI--Ig~GGI~s~~Da~e~i~aGAs~Vqv~Ta~~y~GP~~---~~~I~~~L~~~L~~~G~~si~e~  339 (354)
T 3tjx_A          265 LANINAFYRRCPGKLI--FGCGGVYTGEDAFLHVLAGASMVQVGTALQEEGPSI---FERLTSELLGVMAKKRYQTLDEF  339 (354)
T ss_dssp             HHHHHHHHHHCTTSEE--EEESSCCSHHHHHHHHHHTEEEEEECHHHHHHCTTH---HHHHHHHHHHHHHHHTCCSGGGT
T ss_pred             HHHHHHHHHhcCCCcE--EEeCCcCCHHHHHHHHHcCCCEEEEChhhhhcCchH---HHHHHHHHHHHHHHcCCCCHHHH
Confidence            3444455443 46788  67899999999999999999999999996 565554   34455555555555566666665


Q ss_pred             cCC
Q 037779          288 LGE  290 (310)
Q Consensus       288 ~~~  290 (310)
                      .|.
T Consensus       340 ~G~  342 (354)
T 3tjx_A          340 RGK  342 (354)
T ss_dssp             TTC
T ss_pred             hCh
Confidence            554

>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}

Probab=97.44  E-value=0.0027  Score=55.50  Aligned_cols=176  Identities=16%  Similarity=0.174  Sum_probs=97.0

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHH---hhcCcceEeec------cccc-------hHHHH
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIK---SSVTIPVMAKA------RIGH-------FVEAQ  108 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~---~~~~lPv~~kd------~i~~-------~~~~~  108 (310)
                      ++-+..+.++||+.| -|.   ... .-+|-  -++...++.++   +.+++||.+..      |.-+       .++++
T Consensus        11 ~~~a~~A~~~GAdRI-ELc---~~L-~~GGl--TPS~g~i~~~~~~~~~~~ipV~vMIRPR~GdF~Ys~~E~~~M~~Di~   83 (224)
T 2bdq_A           11 LTDLTRLDKAIISRV-ELC---DNL-AVGGT--TPSYGVIKEANQYLHEKGISVAVMIRPRGGNFVYNDLELRIMEEDIL   83 (224)
T ss_dssp             TTTGGGCCTTTCCEE-EEE---BCG-GGTCB--CCCHHHHHHHHHHHHHTTCEEEEECCSSSSCSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEE-EEc---CCc-ccCCc--CCCHHHHHHHHHhhhhcCCceEEEECCCCCCCcCCHHHHHHHHHHHH
Confidence            455777888999998 451   112 22343  45688899998   88899987642      3211       13556


Q ss_pred             HHHHcCCCeeee---c-CC-CChhHHHHHHHhcCCCCcEEe----e-c--CCHHHHH-HHHHhCCCEEEEecCCCCCchH
Q 037779          109 ILEAIGVDYVDE---S-EV-LTPADEENHINKHNFRVPFVC----G-C--RNLGESL-RRIREGAAMIRTKGEAGTGNIV  175 (310)
Q Consensus       109 ~~~~aGad~v~~---~-~~-~~~~~~~~~~~~~~~~l~v~~----~-v--~t~~ea~-~a~~~Gad~I~v~g~~~~~~~~  175 (310)
                      .+.++|+|.+..   + +. +..+...+.+...+ ++++..    + +  .++.++. ...++|.+-|-++|-..+.+. 
T Consensus        84 ~~~~~GadGvV~G~Lt~dg~iD~~~~~~Li~~a~-~~~vTFHRAFD~~~~~d~~~ale~L~~lGv~rILTSG~~~~~~a-  161 (224)
T 2bdq_A           84 RAVELESDALVLGILTSNNHIDTEAIEQLLPATQ-GLPLVFHMAFDVIPKSDQKKSIDQLVALGFTRILLHGSSNGEPI-  161 (224)
T ss_dssp             HHHHTTCSEEEECCBCTTSSBCHHHHHHHHHHHT-TCCEEECGGGGGSCTTTHHHHHHHHHHTTCCEEEECSCSSCCCG-
T ss_pred             HHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhC-CCeEEEECchhccCCcCHHHHHHHHHHcCCCEEECCCCCCCCcH-
Confidence            677799999872   1 11 23333444443321 343332    1 3  4555544 345677776665543221100 


Q ss_pred             HHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHh-c-CCCCEEEEccCCCCCHHHHHHHH-HcCCCEEEEc
Q 037779          176 EAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQ-L-GRLPVVHFAAGGVATPADAAMMM-QLGCDGVFVG  252 (310)
Q Consensus       176 ~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~-~-~~iPVv~ia~GGI~t~~di~~~~-~~GadgV~VG  252 (310)
                                                     ....+.++.+.+ . .++-|  ++.||| +++++.++. ++|++.+=..
T Consensus       162 -------------------------------~~g~~~L~~Lv~~a~~ri~I--m~GgGV-~~~Ni~~l~~~tGv~e~H~s  207 (224)
T 2bdq_A          162 -------------------------------IENIKHIKALVEYANNRIEI--MVGGGV-TAENYQYICQETGVKQAHGT  207 (224)
T ss_dssp             -------------------------------GGGHHHHHHHHHHHTTSSEE--EECSSC-CTTTHHHHHHHHTCCEEEET
T ss_pred             -------------------------------HHHHHHHHHHHHhhCCCeEE--EeCCCC-CHHHHHHHHHhhCCCEEccc
Confidence                                           112334444433 2 24444  689999 599999998 5799999987


Q ss_pred             cccccCCCHHH
Q 037779          253 SGVFKSGDPVR  263 (310)
Q Consensus       253 sai~~~~dp~~  263 (310)
                      +.+.++.+|.+
T Consensus       208 ~i~~~~~~~~~  218 (224)
T 2bdq_A          208 RITQMAGDPLE  218 (224)
T ss_dssp             TCC--------
T ss_pred             cccCCCCCcch
Confidence            77777778764

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*

Probab=97.41  E-value=0.00041  Score=74.98  Aligned_cols=120  Identities=14%  Similarity=0.125  Sum_probs=74.2

Q ss_pred             cCCCeee---ecCCCChh---HHHHHHHhcCCCCcEEee----cCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHH
Q 037779          113 IGVDYVD---ESEVLTPA---DEENHINKHNFRVPFVCG----CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVR  182 (310)
Q Consensus       113 aGad~v~---~~~~~~~~---~~~~~~~~~~~~l~v~~~----v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~  182 (310)
                      .|.+.+.   .++..++.   ++++.++...++.++++.    +....++..+.++|+|+|.+.|..+++...       
T Consensus       961 ~Gv~lisP~~~~d~~s~edl~~~I~~Lk~~~~~~PV~VKlv~~~gi~~~A~~a~~AGAD~IvVsG~eGGTgas------- 1033 (1479)
T 1ea0_A          961 PGVMLISPPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGAS------- 1033 (1479)
T ss_dssp             TTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCSSE-------
T ss_pred             CCCCccCCCCCcCcCCHHHHHHHHHHHHHhCCCCCEEEEEcCCCChHHHHHHHHHcCCcEEEEcCCCCCCCCC-------
Confidence            5666654   11333444   344555554445665553    234668888899999999998764322100       


Q ss_pred             HhhcceecccccCchhHHhhhccCCC-cHHHHHHHHhc-------CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccc
Q 037779          183 SVMGDIRVLRNMDDDEVFTFAKNIAA-PYDLVMQTKQL-------GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG  254 (310)
Q Consensus       183 ~~~~~~~~l~~~~~d~~~~~~~~~~~-~~~l~~~i~~~-------~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsa  254 (310)
                             .+...         .+.+. ....+..+.+.       .++||  |++|||.+..|+.+++.+||++|.+|++
T Consensus      1034 -------p~~~~---------~~~G~Pt~~aL~ev~~al~~~glr~~VpV--IAdGGIrtG~DVakALaLGAdaV~iGTa 1095 (1479)
T 1ea0_A         1034 -------PQTSI---------KFAGLPWEMGLSEVHQVLTLNRLRHRVRL--RTDGGLKTGRDIVIAAMLGAEEFGIGTA 1095 (1479)
T ss_dssp             -------ETTHH---------HHSCCCHHHHHHHHHHHHHTTTCTTTSEE--EEESSCCSHHHHHHHHHTTCSEEECCHH
T ss_pred             -------chhhh---------cCCchhHHHHHHHHHHHHHHcCCCCCceE--EEECCCCCHHHHHHHHHcCCCeeeEcHH
Confidence                   00000         01112 23344444432       26888  7799999999999999999999999999


Q ss_pred             ccc
Q 037779          255 VFK  257 (310)
Q Consensus       255 i~~  257 (310)
                      ++.
T Consensus      1096 fL~ 1098 (1479)
T 1ea0_A         1096 SLI 1098 (1479)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            965

>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1

Probab=97.32  E-value=0.00075  Score=59.61  Aligned_cols=39  Identities=26%  Similarity=0.333  Sum_probs=29.0

Q ss_pred             HHhcCCCCEEEEccCCCCCHHHHHHHHHcCCC--EEEEccccc
Q 037779          216 TKQLGRLPVVHFAAGGVATPADAAMMMQLGCD--GVFVGSGVF  256 (310)
Q Consensus       216 i~~~~~iPVv~ia~GGI~t~~di~~~~~~Gad--gV~VGsai~  256 (310)
                      +++...+||  -++|||.+.+++.+++++|++  |+..|..|+
T Consensus       187 m~~~v~v~V--KaaGGirt~~~al~~i~aGa~RiG~S~g~~I~  227 (234)
T 1n7k_A          187 LAKPLGMGV--KASGGIRSGIDAVLAVGAGADIIGTSSAVKVL  227 (234)
T ss_dssp             HHGGGTCEE--EEESSCCSHHHHHHHHHTTCSEEEETTHHHHH
T ss_pred             HHHHHCCCE--EEecCCCCHHHHHHHHHcCccccchHHHHHHH
Confidence            344323788  468999999999999999999  555555444

>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}

Probab=97.27  E-value=0.0067  Score=55.09  Aligned_cols=174  Identities=18%  Similarity=0.201  Sum_probs=103.2

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchh--h-hcCCC--CCCCC----hHHHHHHHhhcCcceEeecc--ccch----H
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADI--R-AQGGV--ARMSD----PQLIKQIKSSVTIPVMAKAR--IGHF----V  105 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~--r-~~~G~--~~~~~----~~~i~~i~~~~~lPv~~kd~--i~~~----~  105 (310)
                      .+.|+-.|+.++++|++++-.-     +-  - ...|-  ...-.    ...++.|++.+++||++..-  .+..    .
T Consensus        27 ~a~D~~sA~i~e~aGf~ai~vs-----~s~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d~Gyg~~~~~~~  101 (287)
T 3b8i_A           27 SVFDPMSARIAADLGFECGILG-----GSVASLQVLAAPDFALITLSEFVEQATRIGRVARLPVIADADHGYGNALNVMR  101 (287)
T ss_dssp             ECCSHHHHHHHHHTTCSCEEEC-----HHHHHHHHHSCCSSSCSCHHHHHHHHHHHHTTCSSCEEEECTTCSSSHHHHHH
T ss_pred             cCCCHHHHHHHHHcCCCEEEeC-----cHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCHHHHHH
Confidence            4567788999999999997221     11  0 00111  11111    23456777888999887422  2322    3


Q ss_pred             HHHHHHHcCCCeeeecCCC-------------ChhHHHHHHHh---cC--CCCcEEeecCC----HH----HHHHHHHhC
Q 037779          106 EAQILEAIGVDYVDESEVL-------------TPADEENHINK---HN--FRVPFVCGCRN----LG----ESLRRIREG  159 (310)
Q Consensus       106 ~~~~~~~aGad~v~~~~~~-------------~~~~~~~~~~~---~~--~~l~v~~~v~t----~~----ea~~a~~~G  159 (310)
                      .+..+.++||.+|.+-+..             +..+....++.   .+  .+..+..-+..    .+    .++...++|
T Consensus       102 ~v~~l~~aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~~~I~aa~~a~~~~~~~i~aRtdaa~~gl~~ai~Ra~ay~eAG  181 (287)
T 3b8i_A          102 TVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARVDPALTIIARTNAELIDVDAVIQRTLAYQEAG  181 (287)
T ss_dssp             HHHHHHHHTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHHHHHCCSTTSEEEEEEETTTSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCeEEEEcCCCCccccCCCCCCccCHHHHHHHHHHHHHcCCCCCcEEEEechhhhcCHHHHHHHHHHHHHcC
Confidence            4566777999999843322             22234444432   22  23444443221    12    233444678


Q ss_pred             CCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHH
Q 037779          160 AAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAA  239 (310)
Q Consensus       160 ad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~  239 (310)
                      ||.|.+.+.                                       .+.+.++.+.+..++|++ |.++|-...-+..
T Consensus       182 Ad~i~~e~~---------------------------------------~~~~~~~~i~~~~~~P~i-i~~~g~~~~~~~~  221 (287)
T 3b8i_A          182 ADGICLVGV---------------------------------------RDFAHLEAIAEHLHIPLM-LVTYGNPQLRDDA  221 (287)
T ss_dssp             CSEEEEECC---------------------------------------CSHHHHHHHHTTCCSCEE-EECTTCGGGCCHH
T ss_pred             CCEEEecCC---------------------------------------CCHHHHHHHHHhCCCCEE-EeCCCCCCCCCHH
Confidence            888777521                                       134566777777789998 6777753334688


Q ss_pred             HHHHcCCCEEEEccccccCC
Q 037779          240 MMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       240 ~~~~~GadgV~VGsai~~~~  259 (310)
                      ++.++|+.-|..|..++++-
T Consensus       222 eL~~lGv~~v~~~~~~~raa  241 (287)
T 3b8i_A          222 RLARLGVRVVVNGHAAYFAA  241 (287)
T ss_dssp             HHHHTTEEEEECCCHHHHHH
T ss_pred             HHHHcCCcEEEEChHHHHHH
Confidence            99999999999999888744

>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1

Probab=97.25  E-value=0.0063  Score=51.72  Aligned_cols=37  Identities=22%  Similarity=0.160  Sum_probs=31.2

Q ss_pred             HHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779          211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       211 ~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs  253 (310)
                      +.++.+   .++|+  ||+|+|.+++++.+ +++||++|..|+
T Consensus       142 ~~I~~v---~~~Pi--IaGGlI~t~edv~~-l~aGA~aIsTs~  178 (188)
T 1vkf_A          142 KVARKI---PGRTV--IAAGLVETEEEARE-ILKHVSAISTSS  178 (188)
T ss_dssp             HHHTTS---TTSEE--EEESCCCSHHHHHH-HTTTSSEEEECC
T ss_pred             HHHHHh---cCCCE--EEECCcCCHHHHHH-HHCCCeEEEeCC
Confidence            444444   46788  78999999999999 999999999987

>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*

Probab=97.22  E-value=0.0011  Score=62.83  Aligned_cols=52  Identities=19%  Similarity=0.095  Sum_probs=44.5

Q ss_pred             HHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHH
Q 037779          211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       211 ~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~  266 (310)
                      + ++.+++..++||  |+.||| +++++.++++.| ||.|++|++++..++....++
T Consensus       298 ~-~~~ir~~~~iPv--i~~G~i-t~~~a~~~l~~g~aD~V~igR~~l~~P~l~~k~~  350 (379)
T 3aty_A          298 V-VAWVRGSYSGVK--ISNLRY-DFEEADQQIREGKVDAVAFGAKFIANPDLVERAQ  350 (379)
T ss_dssp             H-HHHHHTTCCSCE--EEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             H-HHHHHHHCCCcE--EEECCC-CHHHHHHHHHcCCCeEEEecHHHHhCcHHHHHHH
Confidence            5 778888778999  668999 899999999987 999999999999887665543

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=97.21  E-value=0.018  Score=50.32  Aligned_cols=126  Identities=17%  Similarity=0.231  Sum_probs=82.9

Q ss_pred             hHHHHHHHhhcCcceEeeccccc-hHHHHHHHHcCCCeeeec-CCCChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHH
Q 037779           81 PQLIKQIKSSVTIPVMAKARIGH-FVEAQILEAIGVDYVDES-EVLTPADEENHINKHNFRVPFVCG-CRNLGESLRRIR  157 (310)
Q Consensus        81 ~~~i~~i~~~~~lPv~~kd~i~~-~~~~~~~~~aGad~v~~~-~~~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~  157 (310)
                      .+.+..+++.-=+||++...... .+.++.+.+.|++.+-.. ......+.++.+.+..+++.+.++ +.+.+++..+.+
T Consensus         8 ~~~~~~l~~~~ii~vir~~~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~l~vgaGtvl~~d~~~~A~~   87 (224)
T 1vhc_A            8 QQIIEKLRELKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKS   87 (224)
T ss_dssp             HHHHHHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHH
T ss_pred             HHHHHHHHHCCeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEeccCchHHHHHHHHHHhCcCcEEeeCcEeeHHHHHHHHH
Confidence            34555565554477776644432 245678888999998643 222344566656555456777665 457889999999


Q ss_pred             hCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHH
Q 037779          158 EGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPAD  237 (310)
Q Consensus       158 ~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~d  237 (310)
                      .|||++... . .                                      +.+.++..++ ...|++ +   |+.|+++
T Consensus        88 aGAd~v~~p-~-~--------------------------------------d~~v~~~ar~-~g~~~i-~---Gv~t~~e  122 (224)
T 1vhc_A           88 SGADFVVTP-G-L--------------------------------------NPKIVKLCQD-LNFPIT-P---GVNNPMA  122 (224)
T ss_dssp             HTCSEEECS-S-C--------------------------------------CHHHHHHHHH-TTCCEE-C---EECSHHH
T ss_pred             CCCCEEEEC-C-C--------------------------------------CHHHHHHHHH-hCCCEE-e---ccCCHHH
Confidence            999998431 1 0                                      2233344444 456774 2   4999999


Q ss_pred             HHHHHHcCCCEEEE
Q 037779          238 AAMMMQLGCDGVFV  251 (310)
Q Consensus       238 i~~~~~~GadgV~V  251 (310)
                      +.++.++|+|.|.+
T Consensus       123 ~~~A~~~Gad~vk~  136 (224)
T 1vhc_A          123 IEIALEMGISAVKF  136 (224)
T ss_dssp             HHHHHHTTCCEEEE
T ss_pred             HHHHHHCCCCEEEE
Confidence            99999999999998

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=97.19  E-value=0.00067  Score=59.38  Aligned_cols=49  Identities=27%  Similarity=0.447  Sum_probs=41.5

Q ss_pred             HHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779          210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD  260 (310)
Q Consensus       210 ~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d  260 (310)
                      .+.++.+++..++|+  ++.|||.+++++.+++++|||+|.+|+.++..++
T Consensus        66 ~~~i~~i~~~~~ipv--i~~g~i~~~~~~~~~~~~Gad~V~i~~~~~~~~~  114 (253)
T 1h5y_A           66 IDSVKRVAEAVSIPV--LVGGGVRSLEDATTLFRAGADKVSVNTAAVRNPQ  114 (253)
T ss_dssp             HHHHHHHHHHCSSCE--EEESSCCSHHHHHHHHHHTCSEEEESHHHHHCTH
T ss_pred             HHHHHHHHHhcCCCE--EEECCCCCHHHHHHHHHcCCCEEEEChHHhhCcH
Confidence            556777777678999  5689999999999999999999999999886443

>3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii}

Probab=97.16  E-value=0.0025  Score=56.41  Aligned_cols=45  Identities=22%  Similarity=0.388  Sum_probs=36.3

Q ss_pred             ccCCCCCHHH-----------HHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779          228 AAGGVATPAD-----------AAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       228 a~GGI~t~~d-----------i~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                      ...||. ++.           ..+++++|+|.+++||+|++++||.+.++++++.++
T Consensus       182 vtPGIr-~~g~~~~dQ~rv~t~~~~~~aGad~lVvGr~I~~a~dp~~a~~~i~~~i~  237 (239)
T 3tr2_A          182 VTPGIR-LETDEKGDQKRVMTPRAAIQAGSDYLVIGRPITQSTDPLKALEAIDKDIK  237 (239)
T ss_dssp             EECCBC-----------CCBCHHHHHHHTCSEEEECHHHHTSSSHHHHHHHHHHHC-
T ss_pred             ECCCcC-CCCCCcCcccccCCHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHh
Confidence            368886 432           567889999999999999999999999999988764

>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A

Probab=97.16  E-value=0.043  Score=49.93  Aligned_cols=174  Identities=14%  Similarity=0.187  Sum_probs=100.4

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchh--hh-cCCC--CCCCC----hHHHHHHHhhcCcceEeecc--cc-c----h
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADI--RA-QGGV--ARMSD----PQLIKQIKSSVTIPVMAKAR--IG-H----F  104 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~--r~-~~G~--~~~~~----~~~i~~i~~~~~lPv~~kd~--i~-~----~  104 (310)
                      .+.|+-.|+.++++|+++|- +    ++-  -. ..|.  ...-.    ...++.|++.+++||++..-  .+ .    .
T Consensus        23 ~a~D~~sA~~~~~aG~~ai~-v----s~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~~~~   97 (295)
T 1xg4_A           23 GTINANHALLAQRAGYQAIY-L----SGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVA   97 (295)
T ss_dssp             ECSSHHHHHHHHHTTCSCEE-E----CHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHCCSCEEEECTTCSSSSHHHHH
T ss_pred             cCcCHHHHHHHHHcCCCEEE-E----CchHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEecCCcccCCCHHHHH
Confidence            45677889999999999972 2    111  00 1121  01111    23456777788999888532  23 2    2


Q ss_pred             HHHHHHHHcCCCeeeecCC--------------CChhHHHHHHHh---c--CCCCcEEeecCCH-----H----HHHHHH
Q 037779          105 VEAQILEAIGVDYVDESEV--------------LTPADEENHINK---H--NFRVPFVCGCRNL-----G----ESLRRI  156 (310)
Q Consensus       105 ~~~~~~~~aGad~v~~~~~--------------~~~~~~~~~~~~---~--~~~l~v~~~v~t~-----~----ea~~a~  156 (310)
                      .-+..+.++||++|.+-+.              .+..+....++.   .  +.+..+..-+...     +    .++...
T Consensus        98 ~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ai~ra~ay~  177 (295)
T 1xg4_A           98 RTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIERAQAYV  177 (295)
T ss_dssp             HHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHHHHHHHHHHHH
Confidence            3456677899999983221              223334333322   1  2334454444332     2    233445


Q ss_pred             HhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEE-EccCCCCCH
Q 037779          157 REGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVH-FAAGGVATP  235 (310)
Q Consensus       157 ~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~-ia~GGI~t~  235 (310)
                      ++|||.|.+.+.                                       .+.+.++.+.+..++|+++ +.++|-...
T Consensus       178 eAGAd~i~~e~~---------------------------------------~~~~~~~~i~~~~~iP~~~N~~~~g~~p~  218 (295)
T 1xg4_A          178 EAGAEMLFPEAI---------------------------------------TELAMYRQFADAVQVPILANITEFGATPL  218 (295)
T ss_dssp             HTTCSEEEETTC---------------------------------------CSHHHHHHHHHHHCSCBEEECCSSSSSCC
T ss_pred             HcCCCEEEEeCC---------------------------------------CCHHHHHHHHHHcCCCEEEEecccCCCCC
Confidence            678888877531                                       1345666676666789842 223443223


Q ss_pred             HHHHHHHHcCCCEEEEccccccC
Q 037779          236 ADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       236 ~di~~~~~~GadgV~VGsai~~~  258 (310)
                      -+..++.++|++.|++|...+++
T Consensus       219 ~~~~eL~~~G~~~v~~~~~~~~a  241 (295)
T 1xg4_A          219 FTTDELRSAHVAMALYPLSAFRA  241 (295)
T ss_dssp             CCHHHHHHTTCSEEEESSHHHHH
T ss_pred             CCHHHHHHcCCCEEEEChHHHHH
Confidence            46788899999999999998874

>4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis}

Probab=97.15  E-value=0.0093  Score=55.81  Aligned_cols=51  Identities=20%  Similarity=0.180  Sum_probs=39.9

Q ss_pred             HHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHH
Q 037779          213 VMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       213 ~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~  266 (310)
                      .+.+++....|++   .||+.+++.+.++++.| ||.|.+|+.++..+|...+++
T Consensus       278 a~~ik~~~~~~v~---~~g~~~~~~ae~~l~~G~aD~V~~gR~~ladPdlp~k~~  329 (358)
T 4a3u_A          278 SPEIRKVFKPPLV---LNQDYTFETAQAALDSGVADAISFGRPFIGNPDLPRRFF  329 (358)
T ss_dssp             HHHHHHHCCSCEE---EESSCCHHHHHHHHHHTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             HHHHHHhcCCcEE---EeCCCCHHHHHHHHHcCCceEeHhhHHHHhChhHHHHHH
Confidence            4455555556763   37778999999999988 999999999999888765543

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=97.14  E-value=0.01  Score=52.22  Aligned_cols=124  Identities=15%  Similarity=0.228  Sum_probs=84.1

Q ss_pred             HHHHHHhhcCcceEeeccccc-hHHHHHHHHcCCCeeeec-CCCChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhC
Q 037779           83 LIKQIKSSVTIPVMAKARIGH-FVEAQILEAIGVDYVDES-EVLTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREG  159 (310)
Q Consensus        83 ~i~~i~~~~~lPv~~kd~i~~-~~~~~~~~~aGad~v~~~-~~~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~G  159 (310)
                      .++.+++.-=+||++.+.... ...++.+.+.|++.+-++ ......+.++.+++..+++.+.++ +-|.++++.+.++|
T Consensus        27 ~~~~l~~~~vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t~~a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AG  106 (232)
T 4e38_A           27 INNQLKALKVIPVIAIDNAEDIIPLGKVLAENGLPAAEITFRSDAAVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAG  106 (232)
T ss_dssp             HHHHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHT
T ss_pred             HHHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCCHHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcC
Confidence            344444433367776655443 245678888999998643 223455677777765456777764 77899999999999


Q ss_pred             CCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHH
Q 037779          160 AAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAA  239 (310)
Q Consensus       160 ad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~  239 (310)
                      |+++..-+                                        .+.++++...+. .+|+  +  =|+.|++++.
T Consensus       107 A~fIvsP~----------------------------------------~~~~vi~~~~~~-gi~~--i--pGv~TptEi~  141 (232)
T 4e38_A          107 ATFVVSPG----------------------------------------FNPNTVRACQEI-GIDI--V--PGVNNPSTVE  141 (232)
T ss_dssp             CSEEECSS----------------------------------------CCHHHHHHHHHH-TCEE--E--CEECSHHHHH
T ss_pred             CCEEEeCC----------------------------------------CCHHHHHHHHHc-CCCE--E--cCCCCHHHHH
Confidence            99986411                                        123344444442 5787  4  4788999999


Q ss_pred             HHHHcCCCEEEE
Q 037779          240 MMMQLGCDGVFV  251 (310)
Q Consensus       240 ~~~~~GadgV~V  251 (310)
                      +++++|+|.|-+
T Consensus       142 ~A~~~Gad~vK~  153 (232)
T 4e38_A          142 AALEMGLTTLKF  153 (232)
T ss_dssp             HHHHTTCCEEEE
T ss_pred             HHHHcCCCEEEE
Confidence            999999999976

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=97.12  E-value=0.0023  Score=56.24  Aligned_cols=46  Identities=22%  Similarity=0.400  Sum_probs=40.8

Q ss_pred             HHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       211 ~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      +.++.+++..++|+  ++.|||.+++++..++++|||+|.+|+..+..
T Consensus        65 ~~i~~i~~~~~ipv--~v~ggI~~~~~~~~~l~~Gad~V~lg~~~l~~  110 (244)
T 1vzw_A           65 ALIAEVAQAMDIKV--ELSGGIRDDDTLAAALATGCTRVNLGTAALET  110 (244)
T ss_dssp             HHHHHHHHHCSSEE--EEESSCCSHHHHHHHHHTTCSEEEECHHHHHC
T ss_pred             HHHHHHHHhcCCcE--EEECCcCCHHHHHHHHHcCCCEEEECchHhhC
Confidence            67778877778899  56899999999999999999999999998874

>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0

Probab=97.08  E-value=0.056  Score=48.98  Aligned_cols=194  Identities=14%  Similarity=0.171  Sum_probs=118.0

Q ss_pred             HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHh--hcCcceEee-ccccchHHHHHHHHcCCCeeeec-C
Q 037779           47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS--SVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-E  122 (310)
Q Consensus        47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~--~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~  122 (310)
                      ..+++++.++..|.++-  +...+++.|...  -...++.+.+  ..++||.++ |.-.+++.+..+.++|-+.|-++ +
T Consensus        37 vi~AAee~~sPvIlq~s--~~~~~~~~g~~~--~~~~v~~~A~~~~~~VPValHlDHg~~~e~i~~ai~~GFtSVMiDgS  112 (288)
T 3q94_A           37 ILAAAEEEKSPVILGVS--EGAARHMTGFKT--VVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDAGFTSVMIDAS  112 (288)
T ss_dssp             HHHHHHHTTCCEEEEEE--HHHHHHTSCHHH--HHHHHHHHHHHTTCCSCEEEEEEEECSHHHHHHHHHHTCSEEEECCT
T ss_pred             HHHHHHHhCCCEEEECC--hhhhhhcCCHHH--HHHHHHHHHHhcCCCCcEEEECCCCCCHHHHHHHHHcCCCeEEEeCC
Confidence            46777888888876551  111222133200  0234455666  678999986 44335677888899999998643 2


Q ss_pred             CCChh-------HHHHHHHhcCCCCcEEee-----------------cCCHHHHHHHH-HhCCCEEEEe-cCCCCCchHH
Q 037779          123 VLTPA-------DEENHINKHNFRVPFVCG-----------------CRNLGESLRRI-REGAAMIRTK-GEAGTGNIVE  176 (310)
Q Consensus       123 ~~~~~-------~~~~~~~~~~~~l~v~~~-----------------v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~~  176 (310)
                      .++.+       ++.+..++  .++.+=.+                 .++++|+.+.. +.|+|.+.+. |..++.    
T Consensus       113 ~~p~eeNi~~Tk~vv~~ah~--~gvsVEaElG~vgG~Ed~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~----  186 (288)
T 3q94_A          113 HHPFEENVETTKKVVEYAHA--RNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGP----  186 (288)
T ss_dssp             TSCHHHHHHHHHHHHHHHHT--TTCEEEEEESBCBCSCSSCGGGGCBCCCHHHHHHHHHHHCCSEEEECSSCBSSC----
T ss_pred             CCCHHHHHHHHHHHHHHHHH--cCCeEEEEeeeeccccCCcCCccccCCCHHHHHHHHHHHCCCEEEEEcCcccCC----
Confidence            23333       23333333  33322111                 36788888766 6899998775 433221    


Q ss_pred             HHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc
Q 037779          177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF  256 (310)
Q Consensus       177 ~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~  256 (310)
                                    ++.           ...-++++++.+.+..++|+|.=-++|+ ..+++++++++|..-|=++|.+.
T Consensus       187 --------------Y~~-----------~p~Ld~~~L~~I~~~v~vpLVlHGgSG~-~~e~i~~ai~~Gv~KiNi~Tdl~  240 (288)
T 3q94_A          187 --------------YKG-----------EPNLGFAEMEQVRDFTGVPLVLHGGTGI-PTADIEKAISLGTSKINVNTENQ  240 (288)
T ss_dssp             --------------CSS-----------SCCCCHHHHHHHHHHHCSCEEECCCTTC-CHHHHHHHHHTTEEEEEECHHHH
T ss_pred             --------------cCC-----------CCccCHHHHHHHHHhcCCCEEEeCCCCC-CHHHHHHHHHcCCeEEEEChHHH
Confidence                          110           0122688889998877899986666677 47899999999999999999775


Q ss_pred             cCCCHHHHHHHHHHHHHcC---CChhhH
Q 037779          257 KSGDPVRRARAIVQAVTNY---SDPDVL  281 (310)
Q Consensus       257 ~~~dp~~~~~~~~~~~~~~---~~~~~~  281 (310)
                      .     ...+.+++.+.+.   -+|+.+
T Consensus       241 ~-----a~~~~~r~~~~~~~~~~dpr~~  263 (288)
T 3q94_A          241 I-----EFTKAVREVLNKDQEVYDPRKF  263 (288)
T ss_dssp             H-----HHHHHHHHHHHHCSSCCCTHHH
T ss_pred             H-----HHHHHHHHHHHhCCCcCCHHHH
Confidence            4     2344444444432   356555

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=97.08  E-value=0.0024  Score=55.95  Aligned_cols=46  Identities=22%  Similarity=0.370  Sum_probs=40.9

Q ss_pred             HHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       211 ~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      +.++.+++..++|+  ++.|||.+++++..++++|||+|.+|+..+..
T Consensus        64 ~~i~~i~~~~~ipv--~v~ggi~~~~~~~~~l~~Gad~V~lg~~~l~~  109 (244)
T 2y88_A           64 ELLAEVVGKLDVQV--ELSGGIRDDESLAAALATGCARVNVGTAALEN  109 (244)
T ss_dssp             HHHHHHHHHCSSEE--EEESSCCSHHHHHHHHHTTCSEEEECHHHHHC
T ss_pred             HHHHHHHHhcCCcE--EEECCCCCHHHHHHHHHcCCCEEEECchHhhC
Confidence            67788877778899  56899999999999999999999999998874

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=96.98  E-value=0.011  Score=54.71  Aligned_cols=112  Identities=18%  Similarity=0.184  Sum_probs=76.2

Q ss_pred             HHHHHHHHHcC--CcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeecC
Q 037779           45 PEQARIAEEAG--ACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESE  122 (310)
Q Consensus        45 ~~~a~~~~~~G--a~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~  122 (310)
                      .+.++.+.++|  ++++ .+|.     .  .|. .....+.++.+++.+..|++++..+.+.+.++.+.++|||+|..+.
T Consensus       108 ~~~a~~~~~~g~~~~~i-~i~~-----~--~G~-~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aGad~Ivvs~  178 (336)
T 1ypf_A          108 YEFVQQLAAEHLTPEYI-TIDI-----A--HGH-SNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAGADATKVGI  178 (336)
T ss_dssp             HHHHHHHHHTTCCCSEE-EEEC-----S--SCC-SHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECS
T ss_pred             HHHHHHHHhcCCCCCEE-EEEC-----C--CCC-cHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEec
Confidence            36688889999  8887 3421     0  111 0122578899999886555555545566889999999999987421


Q ss_pred             -C---C----------C--hhHHHHHHHhcCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779          123 -V---L----------T--PADEENHINKHNFRVPFVC--GCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       123 -~---~----------~--~~~~~~~~~~~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                       .   .          +  ....+..+.+ ..++++++  ++.+..++.+++.+|||.|.+.
T Consensus       179 hgG~~~~~~~~~~~g~~g~~~~~l~~v~~-~~~ipVIa~GGI~~g~Dv~kalalGAdaV~iG  239 (336)
T 1ypf_A          179 GPGKVCITKIKTGFGTGGWQLAALRWCAK-AASKPIIADGGIRTNGDVAKSIRFGATMVMIG  239 (336)
T ss_dssp             SCSTTCHHHHHHSCSSTTCHHHHHHHHHH-TCSSCEEEESCCCSTHHHHHHHHTTCSEEEES
T ss_pred             CCCceeecccccCcCCchhHHHHHHHHHH-HcCCcEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence             1   0          0  1233333433 23788888  7999999999999999999985

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=96.97  E-value=0.0081  Score=51.21  Aligned_cols=102  Identities=15%  Similarity=0.122  Sum_probs=69.0

Q ss_pred             HHHHHHHcCCCeeeec-CCCChhHHHHHHHhc-CCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHH
Q 037779          106 EAQILEAIGVDYVDES-EVLTPADEENHINKH-NFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVR  182 (310)
Q Consensus       106 ~~~~~~~aGad~v~~~-~~~~~~~~~~~~~~~-~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~  182 (310)
                      .++.+.+.|++.+..+ ......+.++.+++. +.++.+.+ .++|++++..+.+.|+|++ +. +.+            
T Consensus        27 ~~~~~~~~G~~~iev~~~~~~~~~~i~~ir~~~~~~~~ig~~~v~~~~~~~~a~~~Gad~i-v~-~~~------------   92 (205)
T 1wa3_A           27 KALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFI-VS-PHL------------   92 (205)
T ss_dssp             HHHHHHHTTCCEEEEETTSTTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEE-EC-SSC------------
T ss_pred             HHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCcEEEecccCCHHHHHHHHHcCCCEE-Ec-CCC------------
Confidence            4567777899998643 222333455666553 23566777 5689999999999999999 64 211            


Q ss_pred             HhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEc
Q 037779          183 SVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG  252 (310)
Q Consensus       183 ~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VG  252 (310)
                                                +.++++..++ ..+|+  ++  |+.|++++.++.++|+|.|-+-
T Consensus        93 --------------------------~~~~~~~~~~-~g~~v--i~--g~~t~~e~~~a~~~Gad~vk~~  131 (205)
T 1wa3_A           93 --------------------------DEEISQFCKE-KGVFY--MP--GVMTPTELVKAMKLGHTILKLF  131 (205)
T ss_dssp             --------------------------CHHHHHHHHH-HTCEE--EC--EECSHHHHHHHHHTTCCEEEET
T ss_pred             --------------------------CHHHHHHHHH-cCCcE--EC--CcCCHHHHHHHHHcCCCEEEEc
Confidence                                      1223344433 35788  43  7779999999999999998753

>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2

Probab=96.93  E-value=0.12  Score=46.69  Aligned_cols=195  Identities=13%  Similarity=0.109  Sum_probs=116.7

Q ss_pred             HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CCC
Q 037779           47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EVL  124 (310)
Q Consensus        47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~~  124 (310)
                      ..+++++.++..|.++-  +...+ +.|..  .-...++.+.+.+++||.++ |.-.+++.+..+.++|-+.|-++ +.+
T Consensus        34 vl~AAe~~~sPvIlq~s--~~~~~-y~g~~--~~~~~v~~~a~~~~VPValHlDHg~~~e~i~~ai~~GFtSVMiDgS~l  108 (286)
T 1gvf_A           34 ILEVCSEMRSPVILAGT--PGTFK-HIALE--EIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHF  108 (286)
T ss_dssp             HHHHHHHHTCCCEEEEC--TTHHH-HSCHH--HHHHHHHHHHHHTTSCBEEEEEEECCHHHHHHHHHTTCCEEEECCTTS
T ss_pred             HHHHHHHhCCCEEEECC--hhHHh-hcCHH--HHHHHHHHHHHhCCCcEEEEcCCCCCHHHHHHHHHcCCCeEEECCCCC
Confidence            46777777888775551  11222 22310  01234556666788999886 44335677888889999887633 223


Q ss_pred             Chh-------HHHHHHHhcCCCCcE----------Ee-------ecCCHHHHHHHH-HhCCCEEEEe-cCCCCCchHHHH
Q 037779          125 TPA-------DEENHINKHNFRVPF----------VC-------GCRNLGESLRRI-REGAAMIRTK-GEAGTGNIVEAV  178 (310)
Q Consensus       125 ~~~-------~~~~~~~~~~~~l~v----------~~-------~v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~~~~  178 (310)
                      +.+       ++.+..++.+..+..          .+       -.++++|+.+.. +.|+|.+.+. |..++.      
T Consensus       109 p~eeNi~~Tk~vv~~ah~~gvsVEaElG~vgg~ed~~~~~~~~~~~T~Peea~~Fv~~TgvD~LAvaiGt~HG~------  182 (286)
T 1gvf_A          109 PFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGL------  182 (286)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCEEEEEESCCC-----------CCSSCCHHHHHHHHHHHCCSEEEECSSCCSSC------
T ss_pred             CHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCcccCcccccccccCCCHHHHHHHHHHHCCCEEEeecCccccC------
Confidence            333       333444333321100          00       125677887766 5788888764 433321      


Q ss_pred             HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                                  ++.           ...-++++++.+.+..++|+|.=-++|+ ..+++++++++|..-|=++|.+-. 
T Consensus       183 ------------Y~~-----------~p~Ld~~~L~~I~~~~~vpLVlHGgSG~-~~e~i~~ai~~Gv~KiNi~Tdl~~-  237 (286)
T 1gvf_A          183 ------------YSK-----------TPKIDFQRLAEIREVVDVPLVLHGASDV-PDEFVRRTIELGVTKVNVATELKI-  237 (286)
T ss_dssp             ------------CSS-----------CCCCCHHHHHHHHHHCCSCEEECCCTTC-CHHHHHHHHHTTEEEEEECHHHHH-
T ss_pred             ------------cCC-----------CCccCHHHHHHHHHhcCCCEEEECCCCC-CHHHHHHHHHCCCeEEEEChHHHH-
Confidence                        110           0123688999999888899976556677 478899999999999999997765 


Q ss_pred             CCHHHHHHHHHHHHHcC---CChhhH
Q 037779          259 GDPVRRARAIVQAVTNY---SDPDVL  281 (310)
Q Consensus       259 ~dp~~~~~~~~~~~~~~---~~~~~~  281 (310)
                          ...+.+++.+.+.   .+|+.+
T Consensus       238 ----a~~~~~r~~~~~~~~~~dpr~~  259 (286)
T 1gvf_A          238 ----AFAGAVKAWFAENPQGNDPRYY  259 (286)
T ss_dssp             ----HHHHHHHHHHHHCTTCCCHHHH
T ss_pred             ----HHHHHHHHHHHhCcccCChHHH
Confidence                2344455544443   257554

>3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A*

Probab=96.91  E-value=0.0053  Score=54.85  Aligned_cols=141  Identities=15%  Similarity=0.200  Sum_probs=77.8

Q ss_pred             HHHHHHHhcCCCCcEEeecCC------HH-HHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcc------eeccccc
Q 037779          128 DEENHINKHNFRVPFVCGCRN------LG-ESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGD------IRVLRNM  194 (310)
Q Consensus       128 ~~~~~~~~~~~~l~v~~~v~t------~~-ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~------~~~l~~~  194 (310)
                      +.++.++++  +..++++.+-      .. .++.+.++|+|++.+++..+......+++.+++.+..      ...+..+
T Consensus        69 ~~v~~Lk~~--g~~VflDlK~~DIpnTv~~a~~~~~~~gaD~vTVh~~~G~~~~~~a~~~~~~~g~~~~~li~VtvLTS~  146 (255)
T 3ldv_A           69 DFVRELHKR--GFSVFLDLKFHDIPNTCSKAVKAAAELGVWMVNVHASGGERMMAASREILEPYGKERPLLIGVTVLTSM  146 (255)
T ss_dssp             HHHHHHHHT--TCCEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEGGGCHHHHHHHHHHHGGGGGGSCEEEEECSCTTC
T ss_pred             HHHHHHHhc--CCCEEEEEecccchhHHHHHHHHHHhcCCCEEEEeccCCHHHHHHHHHHHhhcCCCCceEEEEEEEecC
Confidence            445555553  5667777542      22 2345667899999998654433333444444333211      2234433


Q ss_pred             CchhH-------------Hhh---hcc-----CCCcHHHHHHHHhcCCCCEEEEccCCCCCHH-----------HHHHHH
Q 037779          195 DDDEV-------------FTF---AKN-----IAAPYDLVMQTKQLGRLPVVHFAAGGVATPA-----------DAAMMM  242 (310)
Q Consensus       195 ~~d~~-------------~~~---~~~-----~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~-----------di~~~~  242 (310)
                      +...+             ...   +.+     +..+..-+..+++...-..+ +...||. ++           +..+++
T Consensus       147 s~~~l~~~g~~~~~~~~V~~~A~~a~~aG~~GvV~sa~e~~~iR~~~g~~fl-~VtPGIr-~qg~~~~dQ~Rv~t~~~a~  224 (255)
T 3ldv_A          147 ESADLQGIGILSAPQDHVLRLATLTKNAGLDGVVCSAQEASLLKQHLGREFK-LVTPGIR-PAGSEQGDQRRIMTPAQAI  224 (255)
T ss_dssp             CHHHHHHTTCCSCHHHHHHHHHHHHHHTTCSEEECCHHHHHHHHHHHCTTSE-EEEECCC-CTTSTTSSCSSSCCHHHHH
T ss_pred             CHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCEEEECHHHHHHHHHhcCCCcE-EEeCCcc-cCcCCccceeccCCHHHHH
Confidence            32211             111   111     11222233444443211122 2357885 33           156788


Q ss_pred             HcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779          243 QLGCDGVFVGSGVFKSGDPVRRARAIVQAV  272 (310)
Q Consensus       243 ~~GadgV~VGsai~~~~dp~~~~~~~~~~~  272 (310)
                      ++|+|.+++||+|++++||.+.++++++.+
T Consensus       225 ~aGad~iVvGr~I~~a~dp~~a~~~i~~ei  254 (255)
T 3ldv_A          225 ASGSDYLVIGRPITQAAHPEVVLEEINSSL  254 (255)
T ss_dssp             HTTCSEEEECHHHHTCSCHHHHHHHHHHHC
T ss_pred             HcCCCEEEECHHHhCCCCHHHHHHHHHHhh
Confidence            999999999999999999999999887654

>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7

Probab=96.91  E-value=0.06  Score=49.04  Aligned_cols=174  Identities=16%  Similarity=0.213  Sum_probs=101.1

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccch--hh-hcCCC--CCCCC----hHHHHHHHhhcCcceEeeccc--cc----hH
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPAD--IR-AQGGV--ARMSD----PQLIKQIKSSVTIPVMAKARI--GH----FV  105 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d--~r-~~~G~--~~~~~----~~~i~~i~~~~~lPv~~kd~i--~~----~~  105 (310)
                      .+.|+-.|+.++++|+++|- +    ++  .- ...|.  ...-.    ...++.|++.+++||++..-.  +.    ..
T Consensus        28 ~a~D~~sA~l~e~aGf~ai~-v----s~~s~a~~~~G~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d~Gyg~~~~v~~  102 (298)
T 3eoo_A           28 GAITAYAAKMAEAVGFKAVY-L----SGGGVAANSLGIPDLGISTMDDVLVDANRITNATNLPLLVDIDTGWGGAFNIAR  102 (298)
T ss_dssp             ECSSHHHHHHHHHHTCSCEE-E----CHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEECTTCSSSHHHHHH
T ss_pred             cCCCHHHHHHHHHcCCCEEE-E----CcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhcCCeEEEECCCCCCCHHHHHH
Confidence            45677889999999999872 2    11  00 11121  11112    334567777889999885322  22    13


Q ss_pred             HHHHHHHcCCCeeeecC--------------CCChhHHHHHHHh-----cCCCCcEEeecCCH-----HH----HHHHHH
Q 037779          106 EAQILEAIGVDYVDESE--------------VLTPADEENHINK-----HNFRVPFVCGCRNL-----GE----SLRRIR  157 (310)
Q Consensus       106 ~~~~~~~aGad~v~~~~--------------~~~~~~~~~~~~~-----~~~~l~v~~~v~t~-----~e----a~~a~~  157 (310)
                      .+..+.++||.+|++-+              ..+..+....++.     .+.++.+.+-+...     +|    ++...+
T Consensus       103 ~v~~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gldeai~Ra~ay~~  182 (298)
T 3eoo_A          103 TIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGIDAAIERAIAYVE  182 (298)
T ss_dssp             HHHHHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCHHHHHHHHHhhHh
Confidence            45667789999998321              1234455555532     23445666655543     12    233446


Q ss_pred             hCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEE-EccCCCCCHH
Q 037779          158 EGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVH-FAAGGVATPA  236 (310)
Q Consensus       158 ~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~-ia~GGI~t~~  236 (310)
                      +|||.|.+.+.                                       .+.+.++.+.+..++|+++ +.++|-...-
T Consensus       183 AGAD~if~~~~---------------------------------------~~~ee~~~~~~~~~~Pl~~n~~~~g~tp~~  223 (298)
T 3eoo_A          183 AGADMIFPEAM---------------------------------------KTLDDYRRFKEAVKVPILANLTEFGSTPLF  223 (298)
T ss_dssp             TTCSEEEECCC---------------------------------------CSHHHHHHHHHHHCSCBEEECCTTSSSCCC
T ss_pred             cCCCEEEeCCC---------------------------------------CCHHHHHHHHHHcCCCeEEEeccCCCCCCC
Confidence            78888887632                                       0233344444444578742 2345532124


Q ss_pred             HHHHHHHcCCCEEEEccccccC
Q 037779          237 DAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       237 di~~~~~~GadgV~VGsai~~~  258 (310)
                      +..++.++|+.-|..|...+++
T Consensus       224 ~~~eL~~lGv~~v~~~~~~~ra  245 (298)
T 3eoo_A          224 TLDELKGANVDIALYCCGAYRA  245 (298)
T ss_dssp             CHHHHHHTTCCEEEECSHHHHH
T ss_pred             CHHHHHHcCCeEEEEchHHHHH
Confidence            6888999999999999998874

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=96.89  E-value=0.0038  Score=58.59  Aligned_cols=124  Identities=21%  Similarity=0.218  Sum_probs=80.4

Q ss_pred             cCcceEee--ccccchHHHHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeec--CCHHHHHHHHHhCCCEEEEe
Q 037779           91 VTIPVMAK--ARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGC--RNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus        91 ~~lPv~~k--d~i~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v--~t~~ea~~a~~~Gad~I~v~  166 (310)
                      .++|++.-  +.+.....+..+..+|.-+++. ...+++++.+.+++...-+...+..  .+.+.++++.++|+|+|.+.
T Consensus        41 l~~Pii~ApM~~vte~~lA~A~a~~Gg~gvi~-~~~s~ee~~~~i~~~~~~~~~~~g~~~~~~e~~~~a~~aGvdvI~id  119 (361)
T 3r2g_A           41 LNLPVISANMDTITESNMANFMHSKGAMGALH-RFMTIEENIQEFKKCKGPVFVSVGCTENELQRAEALRDAGADFFCVD  119 (361)
T ss_dssp             ESSCEEECCSTTTCSHHHHHHHHHTTCEEBCC-SCSCHHHHHHHHHTCCSCCBEEECSSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCEEECCCCCchHHHHHHHHHHcCCCEEEe-CCCCHHHHHHHHhhcceEEEEEcCCCHHHHHHHHHHHHcCCCEEEEe
Confidence            57888764  3334445666777788777653 3467888888877632112222222  23445677788999999886


Q ss_pred             cCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcC
Q 037779          167 GEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLG  245 (310)
Q Consensus       167 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~G  245 (310)
                      ...+..                                  ...++.++.+++. .++||+   .|++.|+++++.+.++|
T Consensus       120 ~a~G~~----------------------------------~~~~e~I~~ir~~~~~~~Vi---~G~V~T~e~A~~a~~aG  162 (361)
T 3r2g_A          120 VAHAHA----------------------------------KYVGKTLKSLRQLLGSRCIM---AGNVATYAGADYLASCG  162 (361)
T ss_dssp             CSCCSS----------------------------------HHHHHHHHHHHHHHTTCEEE---EEEECSHHHHHHHHHTT
T ss_pred             CCCCCc----------------------------------HhHHHHHHHHHHhcCCCeEE---EcCcCCHHHHHHHHHcC
Confidence            321100                                  0024566677664 367884   27799999999999999


Q ss_pred             CCEEEEc
Q 037779          246 CDGVFVG  252 (310)
Q Consensus       246 adgV~VG  252 (310)
                      +|+|.||
T Consensus       163 aD~I~Vg  169 (361)
T 3r2g_A          163 ADIIKAG  169 (361)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEc
Confidence            9999995

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=96.89  E-value=0.011  Score=57.82  Aligned_cols=113  Identities=17%  Similarity=0.231  Sum_probs=76.8

Q ss_pred             CHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeeec-
Q 037779           44 TPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDES-  121 (310)
Q Consensus        44 ~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-  121 (310)
                      ..+.++.+.++|++.| .++     ..  .|.. ....+.++++++.+ ++||++... .+.+.++.+.++|||+|... 
T Consensus       232 ~~~~a~~l~~aG~d~I-~id-----~a--~g~~-~~~~~~i~~ir~~~p~~~Vi~g~v-~t~e~a~~l~~aGaD~I~Vg~  301 (496)
T 4fxs_A          232 NEERVKALVEAGVDVL-LID-----SS--HGHS-EGVLQRIRETRAAYPHLEIIGGNV-ATAEGARALIEAGVSAVKVGI  301 (496)
T ss_dssp             CHHHHHHHHHTTCSEE-EEE-----CS--CTTS-HHHHHHHHHHHHHCTTCCEEEEEE-CSHHHHHHHHHHTCSEEEECS
T ss_pred             hHHHHHHHHhccCceE-Eec-----cc--cccc-hHHHHHHHHHHHHCCCceEEEccc-CcHHHHHHHHHhCCCEEEECC
Confidence            3688999999999988 442     11  1110 01157888999887 899988433 34578889999999999731 


Q ss_pred             ----C---------CCChhHHHHHHHh--cCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779          122 ----E---------VLTPADEENHINK--HNFRVPFVC--GCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       122 ----~---------~~~~~~~~~~~~~--~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                          .         ..+....+..+.+  +..++++++  ++.+..++.+++.+|||.+.+.
T Consensus       302 g~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iG  363 (496)
T 4fxs_A          302 GPGSICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG  363 (496)
T ss_dssp             SCCTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred             CCCcCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEec
Confidence                1         0111222222322  224688888  6999999999999999999885

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=96.89  E-value=0.0023  Score=56.78  Aligned_cols=51  Identities=16%  Similarity=0.337  Sum_probs=44.2

Q ss_pred             CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779          208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD  260 (310)
Q Consensus       208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d  260 (310)
                      ...++++.+.+...+|+  -+.|||.|.+++.+++++||+-|++||+.++.++
T Consensus        62 ~~~~~i~~i~~~~~~pl--~vGGGIrs~e~~~~~l~~GadkVii~t~a~~~p~  112 (243)
T 4gj1_A           62 RQFALIEKLAKEVSVNL--QVGGGIRSKEEVKALLDCGVKRVVIGSMAIKDAT  112 (243)
T ss_dssp             CCHHHHHHHHHHCCSEE--EEESSCCCHHHHHHHHHTTCSEEEECTTTTTCHH
T ss_pred             hHHHHHHHHHHhcCCCe--EeccccccHHHHHHHHHcCCCEEEEccccccCCc
Confidence            35778888888788999  5699999999999999999999999999888443

>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}

Probab=96.87  E-value=0.071  Score=47.47  Aligned_cols=170  Identities=19%  Similarity=0.143  Sum_probs=95.2

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccch--hhhcCCC--CCCCC----hHHHHHHHhhcCcceEeeccccc----hHHHH
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPAD--IRAQGGV--ARMSD----PQLIKQIKSSVTIPVMAKARIGH----FVEAQ  108 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d--~r~~~G~--~~~~~----~~~i~~i~~~~~lPv~~kd~i~~----~~~~~  108 (310)
                      .+-|+-.|+.++++|+++|-.-     +  .-...|.  ...-.    ...++.|++.+++||++..-.++    ..-+.
T Consensus        26 ~ayD~~sA~~~~~aG~dai~vg-----~~s~a~~~G~pD~~~vt~~em~~~~~~I~r~~~~pviaD~~~Gyg~~~~~~~~  100 (255)
T 2qiw_A           26 TVWDTWSAGLVEEAGFSGLTIG-----SHPVADATGSSDGENMNFADYMAVVKKITSAVSIPVSVDVESGYGLSPADLIA  100 (255)
T ss_dssp             EESSHHHHHHHHHTTCSCEEEC-----HHHHHHHTTCCTTTCSCHHHHHHHHHHHHHHCSSCEEEECTTCTTCCHHHHHH
T ss_pred             cCcCHHHHHHHHHcCCCEEEEC-----hHHHHHhCCCCCCCCcCHHHHHHHHHHHHhcCCCCEEeccCCCcCcHHHHHHH
Confidence            4567788999999999997321     1  1111121  11111    22456777788899998533321    34456


Q ss_pred             HHHHcCCCeeeecCC--------CChhHHHHHHHh---c----CCCCcEEeecCC-----------HHH----HHHHHHh
Q 037779          109 ILEAIGVDYVDESEV--------LTPADEENHINK---H----NFRVPFVCGCRN-----------LGE----SLRRIRE  158 (310)
Q Consensus       109 ~~~~aGad~v~~~~~--------~~~~~~~~~~~~---~----~~~l~v~~~v~t-----------~~e----a~~a~~~  158 (310)
                      .+.++||+.|.+-+.        .+..+..+.++.   .    +....+..-+..           .++    ++...++
T Consensus       101 ~l~~aGa~gv~iEd~~~~~~k~l~~~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~~~~g~~~~~~~~~~ai~ra~a~~eA  180 (255)
T 2qiw_A          101 QILEAGAVGINVEDVVHSEGKRVREAQEHADYIAAARQAADVAGVDVVINGRTDAVKLGADVFEDPMVEAIKRIKLMEQA  180 (255)
T ss_dssp             HHHHTTCCEEEECSEEGGGTTEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECHHHHCTTTSSSHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCcEEEECCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCeEEEEEechhhccCCcchHHHHHHHHHHHHHHHc
Confidence            677899999984322        223344444432   1    222223332221           122    2233356


Q ss_pred             CCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCH-HH
Q 037779          159 GAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATP-AD  237 (310)
Q Consensus       159 Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~-~d  237 (310)
                      |||.|.+.+.                                       .+.+..+.+.+..++|+.+....|-.+| -.
T Consensus       181 GAd~i~~e~~---------------------------------------~~~~~~~~i~~~~~~P~n~~~~~~~~~p~~~  221 (255)
T 2qiw_A          181 GARSVYPVGL---------------------------------------STAEQVERLVDAVSVPVNITAHPVDGHGAGD  221 (255)
T ss_dssp             TCSEEEECCC---------------------------------------CSHHHHHHHHTTCSSCBEEECBTTTBBTTBC
T ss_pred             CCcEEEEcCC---------------------------------------CCHHHHHHHHHhCCCCEEEEecCCCCCCCCC
Confidence            7766665421                                       1345677777777789875432332122 35


Q ss_pred             HHHHHHcCCCEEEEccc
Q 037779          238 AAMMMQLGCDGVFVGSG  254 (310)
Q Consensus       238 i~~~~~~GadgV~VGsa  254 (310)
                      +.++.++|+.-|..|..
T Consensus       222 ~~eL~~lGv~~v~~~~~  238 (255)
T 2qiw_A          222 LATLAGLGVRRVTFGPL  238 (255)
T ss_dssp             HHHHHHTTCCEEECTTH
T ss_pred             HHHHHHcCCCEEEEHHH
Confidence            78889999999999987

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=96.87  E-value=0.014  Score=55.44  Aligned_cols=112  Identities=18%  Similarity=0.193  Sum_probs=75.9

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeeec--
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDES--  121 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~~--  121 (310)
                      .+.++.+.++|++.+ .+|....+.+        ...+.++.+++.+ ++||++.. +.+.+.++.+.++|+|+|...  
T Consensus       155 ~~~a~~~~~~G~d~i-~i~~~~g~~~--------~~~e~i~~ir~~~~~~pviv~~-v~~~~~a~~a~~~Gad~I~vg~~  224 (404)
T 1eep_A          155 IERVEELVKAHVDIL-VIDSAHGHST--------RIIELIKKIKTKYPNLDLIAGN-IVTKEAALDLISVGADCLKVGIG  224 (404)
T ss_dssp             HHHHHHHHHTTCSEE-EECCSCCSSH--------HHHHHHHHHHHHCTTCEEEEEE-ECSHHHHHHHHTTTCSEEEECSS
T ss_pred             HHHHHHHHHCCCCEE-EEeCCCCChH--------HHHHHHHHHHHHCCCCeEEEcC-CCcHHHHHHHHhcCCCEEEECCC
Confidence            577888999999998 3431111111        1156778888888 89998743 234577888999999998651  


Q ss_pred             -----------C-CCChhHHHHHHHh--cCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779          122 -----------E-VLTPADEENHINK--HNFRVPFVC--GCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       122 -----------~-~~~~~~~~~~~~~--~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                                 . ..+....+..+.+  ...++++++  ++.+.+++.+++.+|||.|.+.
T Consensus       225 ~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipVia~GGI~~~~d~~~ala~GAd~V~iG  285 (404)
T 1eep_A          225 PGSICTTRIVAGVGVPQITAICDVYEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMIG  285 (404)
T ss_dssp             CSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEEC
T ss_pred             CCcCcCccccCCCCcchHHHHHHHHHHHhhcCceEEEECCCCCHHHHHHHHHcCCCHHhhC
Confidence                       1 1112223333433  234688888  6999999999999999999885

>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}

Probab=96.86  E-value=0.15  Score=45.87  Aligned_cols=172  Identities=20%  Similarity=0.188  Sum_probs=95.4

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccch-hhhcCCC--CCCCC----hHHHHHHHhhcCcceEeeccc--c-ch----HH
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPAD-IRAQGGV--ARMSD----PQLIKQIKSSVTIPVMAKARI--G-HF----VE  106 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d-~r~~~G~--~~~~~----~~~i~~i~~~~~lPv~~kd~i--~-~~----~~  106 (310)
                      .+.|+-.|+.++++|+++|-.-    .+ .-...|-  ...-.    ...++.|++.+++||++..-.  + ..    ..
T Consensus        22 ~a~D~~sA~~~~~aG~~ai~vs----g~s~a~~~G~pD~~~vt~~em~~~~~~I~~~~~~pviaD~d~Gyg~~~~~~~~~   97 (275)
T 2ze3_A           22 NAWDVASARLLEAAGFTAIGTT----SAGIAHARGRTDGQTLTRDEMGREVEAIVRAVAIPVNADIEAGYGHAPEDVRRT   97 (275)
T ss_dssp             EESSHHHHHHHHHHTCSCEEEC----HHHHHHHSCCCSSSSSCHHHHHHHHHHHHHHCSSCEEEECTTCSSSSHHHHHHH
T ss_pred             cccCHHHHHHHHHcCCCEEEEC----cHHHHHhCCCCCCCCCCHHHHHHHHHHHHhhcCCCEEeecCCCCCCCHHHHHHH
Confidence            3457788999999999997221    00 1111121  11111    234567777889999985322  2 22    34


Q ss_pred             HHHHHHcCCCeeeecCC--------CChhHHHHHHHh---c----CCCCcEEeecCC------------HHHH----HHH
Q 037779          107 AQILEAIGVDYVDESEV--------LTPADEENHINK---H----NFRVPFVCGCRN------------LGES----LRR  155 (310)
Q Consensus       107 ~~~~~~aGad~v~~~~~--------~~~~~~~~~~~~---~----~~~l~v~~~v~t------------~~ea----~~a  155 (310)
                      +..+.++||.+|++-+.        .+..+....++.   .    +....+..-+..            .+++    +..
T Consensus        98 v~~l~~aGaagv~iED~~~~~~k~l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~~~ai~Ra~ay  177 (275)
T 2ze3_A           98 VEHFAALGVAGVNLEDATGLTPTELYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEERLAETVRRGQAY  177 (275)
T ss_dssp             HHHHHHTTCSEEEEECBCSSSSSCBCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCcEEEECCCcCCCCCccCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhhHHHHHHHHHHH
Confidence            56677899999984322        223344433332   1    223333332222            1221    222


Q ss_pred             HHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCH
Q 037779          156 IREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATP  235 (310)
Q Consensus       156 ~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~  235 (310)
                      .++|||.|.+.+                                       ..+.+.++.+.+..++|+.+....+.   
T Consensus       178 ~eAGAd~i~~e~---------------------------------------~~~~~~~~~i~~~~~~P~n~~~~~~~---  215 (275)
T 2ze3_A          178 ADAGADGIFVPL---------------------------------------ALQSQDIRALADALRVPLNVMAFPGS---  215 (275)
T ss_dssp             HHTTCSEEECTT---------------------------------------CCCHHHHHHHHHHCSSCEEEECCTTS---
T ss_pred             HHCCCCEEEECC---------------------------------------CCCHHHHHHHHHhcCCCEEEecCCCC---
Confidence            345666655532                                       11345667777767789865433333   


Q ss_pred             HHHHHHHHcCCCEEEEccccccC
Q 037779          236 ADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       236 ~di~~~~~~GadgV~VGsai~~~  258 (310)
                      -...++.++|+.-|..|...+++
T Consensus       216 ~~~~eL~~lGv~~v~~~~~~~ra  238 (275)
T 2ze3_A          216 PVPRALLDAGAARVSFGQSLMLA  238 (275)
T ss_dssp             CCHHHHHHTTCSEEECTTHHHHH
T ss_pred             CCHHHHHHcCCcEEEEChHHHHH
Confidence            34588899999999999988874

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=96.85  E-value=0.014  Score=55.50  Aligned_cols=112  Identities=22%  Similarity=0.292  Sum_probs=76.8

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec---
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES---  121 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~---  121 (310)
                      .+.++.+.++|++.|+ +     |. .+ |.. ....+.++.+++.+++||+++.. .+.+.++.+.++|||+|...   
T Consensus       146 ~e~~~~lveaGvdvIv-l-----dt-a~-G~~-~~~~e~I~~ik~~~~i~Vi~g~V-~t~e~A~~a~~aGAD~I~vG~g~  215 (400)
T 3ffs_A          146 IERAKLLVEAGVDVIV-L-----DS-AH-GHS-LNIIRTLKEIKSKMNIDVIVGNV-VTEEATKELIENGADGIKVGIGP  215 (400)
T ss_dssp             CHHHHHHHHHTCSEEE-E-----CC-SC-CSB-HHHHHHHHHHHTTCCCEEEEEEE-CSHHHHHHHHHTTCSEEEECC--
T ss_pred             HHHHHHHHHcCCCEEE-E-----eC-CC-CCc-ccHHHHHHHHHhcCCCeEEEeec-CCHHHHHHHHHcCCCEEEEeCCC
Confidence            6889999999999883 3     11 11 110 00156788888888999987432 34578899999999998741   


Q ss_pred             ------C-----CCChhHHHHHHHh--cCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779          122 ------E-----VLTPADEENHINK--HNFRVPFVC--GCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       122 ------~-----~~~~~~~~~~~~~--~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                            .     ..+....+..+.+  ...++++++  ++.+..++.+++.+||+.|.+.
T Consensus       216 Gs~~~tr~~~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~vG  275 (400)
T 3ffs_A          216 GSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG  275 (400)
T ss_dssp             -------CCSCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEEC
T ss_pred             CcCcccccccccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence                  0     0122233333432  235788888  5999999999999999999874

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=96.83  E-value=0.011  Score=55.33  Aligned_cols=112  Identities=21%  Similarity=0.264  Sum_probs=75.3

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec--C
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES--E  122 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~--~  122 (310)
                      .+.++.+.++|++.| .++     .  -.|.. ....+.++++++.+++|++++.. .+.+.++.+.++|||+|...  .
T Consensus       107 ~e~a~~l~eaGad~I-~ld-----~--a~G~~-~~~~~~i~~i~~~~~~~Vivg~v-~t~e~A~~l~~aGaD~I~VG~~~  176 (361)
T 3khj_A          107 IERAKLLVEAGVDVI-VLD-----S--AHGHS-LNIIRTLKEIKSKMNIDVIVGNV-VTEEATKELIENGADGIKVGIGP  176 (361)
T ss_dssp             HHHHHHHHHTTCSEE-EEC-----C--SCCSB-HHHHHHHHHHHHHCCCEEEEEEE-CSHHHHHHHHHTTCSEEEECSSC
T ss_pred             HHHHHHHHHcCcCeE-EEe-----C--CCCCc-HHHHHHHHHHHHhcCCcEEEccC-CCHHHHHHHHHcCcCEEEEecCC
Confidence            788999999999988 442     1  01110 00146778888888999987433 34578889999999998731  0


Q ss_pred             ------------CCChhHHHHHHHh--cCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779          123 ------------VLTPADEENHINK--HNFRVPFVC--GCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       123 ------------~~~~~~~~~~~~~--~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                                  ..+....+..+.+  ...++++++  ++.+..++.+++.+|||.|.+.
T Consensus       177 Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vG  236 (361)
T 3khj_A          177 GSICTTRIVAGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG  236 (361)
T ss_dssp             CTTCCHHHHTCBCCCHHHHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred             CcCCCcccccCCCCCcHHHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence                        0122223333322  123578888  5999999999999999999875

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=96.80  E-value=0.017  Score=56.23  Aligned_cols=112  Identities=17%  Similarity=0.208  Sum_probs=77.1

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeeec--
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDES--  121 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~~--  121 (310)
                      .+.++.+.++|++.| .++     ..  .|.. ....+.++++++.+ ++|+++.+. .+.+.++.+.++|||+|...  
T Consensus       231 ~~~a~~l~~aG~d~I-~id-----~a--~g~~-~~~~~~v~~i~~~~p~~~Vi~g~v-~t~e~a~~l~~aGaD~I~vg~g  300 (490)
T 4avf_A          231 GERVAALVAAGVDVV-VVD-----TA--HGHS-KGVIERVRWVKQTFPDVQVIGGNI-ATAEAAKALAEAGADAVKVGIG  300 (490)
T ss_dssp             HHHHHHHHHTTCSEE-EEE-----CS--CCSB-HHHHHHHHHHHHHCTTSEEEEEEE-CSHHHHHHHHHTTCSEEEECSS
T ss_pred             HHHHHHHhhcccceE-Eec-----cc--CCcc-hhHHHHHHHHHHHCCCceEEEeee-CcHHHHHHHHHcCCCEEEECCC
Confidence            578999999999988 442     11  1110 11157888999887 889988543 34578889999999999731  


Q ss_pred             ---C-------C--CChhHHHHHHHh--cCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779          122 ---E-------V--LTPADEENHINK--HNFRVPFVC--GCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       122 ---~-------~--~~~~~~~~~~~~--~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                         .       .  .+....+..+.+  +..++++++  ++.+..++.+++.+||+.+.+.
T Consensus       301 ~Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vG  361 (490)
T 4avf_A          301 PGSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMG  361 (490)
T ss_dssp             CSTTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEEC
T ss_pred             CCcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeec
Confidence               1       0  112222333333  235788888  6999999999999999999885

>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A

Probab=96.65  E-value=0.0075  Score=53.98  Aligned_cols=26  Identities=27%  Similarity=0.359  Sum_probs=22.3

Q ss_pred             CCCCEEEEccCCCCCHHHHHHHHHcCCC
Q 037779          220 GRLPVVHFAAGGVATPADAAMMMQLGCD  247 (310)
Q Consensus       220 ~~iPVv~ia~GGI~t~~di~~~~~~Gad  247 (310)
                      .+++|  -++|||.|.+++.+++++|++
T Consensus       197 ~~v~V--KaaGGIrt~~~al~~i~aga~  222 (260)
T 1p1x_A          197 KTVGF--KPAGGVRTAEDAQKYLAIADE  222 (260)
T ss_dssp             TTCEE--ECBSSCCSHHHHHHHHHHHHH
T ss_pred             CCceE--EEeCCCCCHHHHHHHHHhhhh
Confidence            35788  579999999999999999765

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=96.65  E-value=0.022  Score=55.67  Aligned_cols=113  Identities=17%  Similarity=0.268  Sum_probs=76.4

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeeecC-
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDESE-  122 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~-  122 (310)
                      .+.++.+.++|++.|. ++       ...|.. ....+.++.+++.+ ++||+++.. .+.+.++.+.++|||+|.... 
T Consensus       257 ~~~a~~~~~aG~d~v~-i~-------~~~G~~-~~~~~~i~~i~~~~~~~pvi~~~v-~t~~~a~~l~~aGad~I~vg~~  326 (514)
T 1jcn_A          257 KYRLDLLTQAGVDVIV-LD-------SSQGNS-VYQIAMVHYIKQKYPHLQVIGGNV-VTAAQAKNLIDAGVDGLRVGMG  326 (514)
T ss_dssp             HHHHHHHHHTTCSEEE-EC-------CSCCCS-HHHHHHHHHHHHHCTTCEEEEEEE-CSHHHHHHHHHHTCSEEEECSS
T ss_pred             HHHHHHHHHcCCCEEE-ee-------ccCCcc-hhHHHHHHHHHHhCCCCceEeccc-chHHHHHHHHHcCCCEEEECCC
Confidence            4778999999999983 31       111220 01147789999988 899988643 345778899999999986311 


Q ss_pred             -------------CCChhHHHHHHHh--cCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEec
Q 037779          123 -------------VLTPADEENHINK--HNFRVPFVC--GCRNLGESLRRIREGAAMIRTKG  167 (310)
Q Consensus       123 -------------~~~~~~~~~~~~~--~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~g  167 (310)
                                   ..+.......+.+  ...++++++  ++.+..++.+++.+|||.+.+..
T Consensus       327 ~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kala~GAd~V~iG~  388 (514)
T 1jcn_A          327 CGSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMMGS  388 (514)
T ss_dssp             CSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEEST
T ss_pred             CCcccccccccCCCccchhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCeeeECH
Confidence                         1111212222222  224688888  69999999999999999999863

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=96.65  E-value=0.022  Score=51.64  Aligned_cols=118  Identities=19%  Similarity=0.251  Sum_probs=74.2

Q ss_pred             HHHHHHHH-cCCcEEEecc-cccchh---hhcCCCCCCCChHHHHHHHhhcCcceEeecccc--c-hHHHHHHHHcCCCe
Q 037779           46 EQARIAEE-AGACAVMALE-RVPADI---RAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG--H-FVEAQILEAIGVDY  117 (310)
Q Consensus        46 ~~a~~~~~-~Ga~~I~~l~-~~~~d~---r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~--~-~~~~~~~~~aGad~  117 (310)
                      +.++.+.+ +|+++| .+| .+|...   ..+++. .....+.++++++.+++||++|...+  + .+.++.+.++|+|+
T Consensus       115 ~~a~~~~~~~g~d~i-ei~~~~p~~~~g~~~~g~~-~~~~~eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~~G~d~  192 (311)
T 1ep3_A          115 AVCAKIGDAANVKAI-ELNISCPNVKHGGQAFGTD-PEVAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAGADG  192 (311)
T ss_dssp             HHHHHHTTSTTEEEE-EEECCSEEGGGTTEEGGGC-HHHHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTTCSE
T ss_pred             HHHHHHhccCCCCEE-EEeCCCCCCCCchhhhcCC-HHHHHHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHHcCCCE
Confidence            45666666 899988 566 333210   111111 00014566777877899999985433  2 24478889999999


Q ss_pred             eeecC--------C--C-----------C-h------hHHHHHHHhcCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779          118 VDESE--------V--L-----------T-P------ADEENHINKHNFRVPFVC--GCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       118 v~~~~--------~--~-----------~-~------~~~~~~~~~~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                      |+.+.        .  .           + +      .++++.+++. .++++++  +++|.+++.++++.|||.|.+.
T Consensus       193 i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~-~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg  270 (311)
T 1ep3_A          193 LTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQD-VDIPIIGMGGVANAQDVLEMYMAGASAVAVG  270 (311)
T ss_dssp             EEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTT-CSSCEEECSSCCSHHHHHHHHHHTCSEEEEC
T ss_pred             EEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHh-cCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence            88521        1  0           0 1      1344444442 4677776  4899999999999999999885

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=96.63  E-value=0.028  Score=54.64  Aligned_cols=112  Identities=18%  Similarity=0.259  Sum_probs=77.4

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeeecC-
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDESE-  122 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~-  122 (310)
                      .+.++.+.++|++.+. ++       ...|. .....+.++.+++.+ ++||+++.. .+.+.++.+.++|+|+|.... 
T Consensus       239 ~~~a~~l~~aGvd~v~-i~-------~~~G~-~~~~~e~i~~i~~~~p~~pvi~g~~-~t~e~a~~l~~~G~d~I~v~~~  308 (494)
T 1vrd_A          239 MERVEKLVKAGVDVIV-ID-------TAHGH-SRRVIETLEMIKADYPDLPVVAGNV-ATPEGTEALIKAGADAVKVGVG  308 (494)
T ss_dssp             HHHHHHHHHTTCSEEE-EC-------CSCCS-SHHHHHHHHHHHHHCTTSCEEEEEE-CSHHHHHHHHHTTCSEEEECSS
T ss_pred             HHHHHHHHHhCCCEEE-EE-------ecCCc-hHHHHHHHHHHHHHCCCceEEeCCc-CCHHHHHHHHHcCCCEEEEcCC
Confidence            4789999999999984 31       11121 011267888999888 799988643 345778899999999997421 


Q ss_pred             -------------CCChhHHHHHHHh--cCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779          123 -------------VLTPADEENHINK--HNFRVPFVC--GCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       123 -------------~~~~~~~~~~~~~--~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                                   ..+.......+.+  ...++++++  ++.+..++.+++.+|||.+.+.
T Consensus       309 ~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~iG  369 (494)
T 1vrd_A          309 PGSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVG  369 (494)
T ss_dssp             CSTTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred             CCccccccccCCCCccHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence                         1122233333332  234688888  6999999999999999999875

>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1

Probab=96.62  E-value=0.013  Score=52.13  Aligned_cols=71  Identities=30%  Similarity=0.404  Sum_probs=56.7

Q ss_pred             CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee
Q 037779           43 VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        43 ~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      .++..++++++.|+++++.+   +..+  ..| .-..++++|+.+++..++||++..+|++.+++..+.++|+|.|+
T Consensus       144 dd~~~akrl~~~G~~aVmPl---g~pI--GsG-~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsDAa~AmeLGAdgVl  214 (265)
T 1wv2_A          144 DDPIIARQLAEIGCIAVMPL---AGLI--GSG-LGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVL  214 (265)
T ss_dssp             SCHHHHHHHHHSCCSEEEEC---SSST--TCC-CCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEE
T ss_pred             CCHHHHHHHHHhCCCEEEeC---CccC--CCC-CCcCCHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence            45899999999999998644   1111  112 12456999999999999999999999988899999999999988

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=96.58  E-value=0.097  Score=45.25  Aligned_cols=124  Identities=19%  Similarity=0.223  Sum_probs=79.1

Q ss_pred             HHHHHHhhcCcceEeeccccc-hHHHHHHHHcCCCeeeec-CCCChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhC
Q 037779           83 LIKQIKSSVTIPVMAKARIGH-FVEAQILEAIGVDYVDES-EVLTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREG  159 (310)
Q Consensus        83 ~i~~i~~~~~lPv~~kd~i~~-~~~~~~~~~aGad~v~~~-~~~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~G  159 (310)
                      .+..+++.-=+||+....... .+.++.+.+.|++.+-.. ......+.++.+.++..++.+.++ +.+.++++.+.+.|
T Consensus         9 ~~~~l~~~~~i~v~r~~~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~~~vgagtvi~~d~~~~A~~aG   88 (214)
T 1wbh_A            9 AESILTTGPVVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAG   88 (214)
T ss_dssp             HHHHHHSCSEEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHT
T ss_pred             HHHHHHHCCEEEEEECCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHCcCCEEeeCEEEEHHHHHHHHHcC
Confidence            444454333356655533332 245678888999998643 222344566656554456666554 56778999999999


Q ss_pred             CCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHH
Q 037779          160 AAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAA  239 (310)
Q Consensus       160 ad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~  239 (310)
                      ||++...+  .                                      +.+..+..++ ..+|++ +   |++|++++.
T Consensus        89 Ad~v~~p~--~--------------------------------------d~~v~~~~~~-~g~~~i-~---G~~t~~e~~  123 (214)
T 1wbh_A           89 AQFAISPG--L--------------------------------------TEPLLKAATE-GTIPLI-P---GISTVSELM  123 (214)
T ss_dssp             CSCEEESS--C--------------------------------------CHHHHHHHHH-SSSCEE-E---EESSHHHHH
T ss_pred             CCEEEcCC--C--------------------------------------CHHHHHHHHH-hCCCEE-E---ecCCHHHHH
Confidence            99886421  0                                      1223333333 346774 2   499999999


Q ss_pred             HHHHcCCCEEEE
Q 037779          240 MMMQLGCDGVFV  251 (310)
Q Consensus       240 ~~~~~GadgV~V  251 (310)
                      ++.++|+|.|.+
T Consensus       124 ~A~~~Gad~v~~  135 (214)
T 1wbh_A          124 LGMDYGLKEFKF  135 (214)
T ss_dssp             HHHHTTCCEEEE
T ss_pred             HHHHCCCCEEEE
Confidence            999999999998

>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1

Probab=96.56  E-value=0.009  Score=54.00  Aligned_cols=26  Identities=15%  Similarity=0.305  Sum_probs=22.1

Q ss_pred             CCCCEEEEccCCCCCHHHHHHHHHcCCC
Q 037779          220 GRLPVVHFAAGGVATPADAAMMMQLGCD  247 (310)
Q Consensus       220 ~~iPVv~ia~GGI~t~~di~~~~~~Gad  247 (310)
                      .+++|  -++|||.|.+++.+++++|++
T Consensus       224 ~~vgV--KaaGGIrt~e~al~~i~aga~  249 (281)
T 2a4a_A          224 NKIGL--KVSGGISDLNTASHYILLARR  249 (281)
T ss_dssp             TCCEE--EEESSCCSHHHHHHHHHHHHH
T ss_pred             CCceE--EEeCCCCCHHHHHHHHHHhhh
Confidence            35788  468999999999999998776

>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1

Probab=96.55  E-value=0.024  Score=49.64  Aligned_cols=32  Identities=31%  Similarity=0.380  Sum_probs=26.4

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHHc---CCC----EEEEccc
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQL---GCD----GVFVGSG  254 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~~---Gad----gV~VGsa  254 (310)
                      ++||  -++|||.|.+++.+++++   |++    -+-..+.
T Consensus       184 ~v~v--KaaGGirt~~~al~~i~a~~~Ga~~~~fRiGtS~~  222 (226)
T 1vcv_A          184 RLGV--KMAGGIRTREQAKAIVDAIGWGEDPARVRLGTSTP  222 (226)
T ss_dssp             CCEE--EEESSCCSHHHHHHHHHHHCSCSCTTTEEEEESCG
T ss_pred             CceE--EEeCCCCCHHHHHHHHHHHHCCCCcCCceEecCch
Confidence            5788  468999999999999999   999    6655543

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=96.55  E-value=0.02  Score=53.42  Aligned_cols=87  Identities=15%  Similarity=0.106  Sum_probs=65.0

Q ss_pred             CChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-------C-CCChhHHHHHHHh-cCCCCcEEee--cC
Q 037779           79 SDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-------E-VLTPADEENHINK-HNFRVPFVCG--CR  147 (310)
Q Consensus        79 ~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-------~-~~~~~~~~~~~~~-~~~~l~v~~~--v~  147 (310)
                      ...+.++.+++.+++||++|... +.+.++.+.++|+|+|..+       + ..+..+.+..+.+ .+..++++++  ++
T Consensus       204 ~~w~~i~~lr~~~~~PvivK~v~-~~e~A~~a~~~GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~GGI~  282 (352)
T 3sgz_A          204 FCWNDLSLLQSITRLPIILKGIL-TKEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVR  282 (352)
T ss_dssp             CCHHHHHHHHHHCCSCEEEEEEC-SHHHHHHHHHTTCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEESSCC
T ss_pred             CCHHHHHHHHHhcCCCEEEEecC-cHHHHHHHHHcCCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEECCCC
Confidence            34678999999999999999764 4478899999999998731       1 1122344444433 2335777774  99


Q ss_pred             CHHHHHHHHHhCCCEEEEe
Q 037779          148 NLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       148 t~~ea~~a~~~Gad~I~v~  166 (310)
                      +..++.+++.+||+.|.+.
T Consensus       283 ~g~Dv~kaLalGA~aV~iG  301 (352)
T 3sgz_A          283 TGTDVLKALALGARCIFLG  301 (352)
T ss_dssp             SHHHHHHHHHTTCSEEEES
T ss_pred             CHHHHHHHHHcCCCEEEEC
Confidence            9999999999999999985

>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A

Probab=96.50  E-value=0.022  Score=52.71  Aligned_cols=45  Identities=18%  Similarity=0.401  Sum_probs=32.7

Q ss_pred             HHHHHhcCCCCEEEEccCCCCCHHHH----HHHHHcCC--CEEEEccccccCC
Q 037779          213 VMQTKQLGRLPVVHFAAGGVATPADA----AMMMQLGC--DGVFVGSGVFKSG  259 (310)
Q Consensus       213 ~~~i~~~~~iPVv~ia~GGI~t~~di----~~~~~~Ga--dgV~VGsai~~~~  259 (310)
                      .+.+.+.+++|+| +.+||.+ .++.    +.++++|+  .||++|+++++..
T Consensus       237 f~~~~~a~~~P~v-~lsgG~~-~~~fl~~v~~A~~aGa~f~Gv~~GRnvwq~~  287 (332)
T 3iv3_A          237 FREQEASTDLPYI-YLSAGVS-AELFQETLVFAHKAGAKFNGVLCGRATWAGS  287 (332)
T ss_dssp             HHHHHHTCSSCEE-EECTTCC-HHHHHHHHHHHHHHTCCCCEEEECHHHHTTH
T ss_pred             HHHHHhcCCCCEE-EECCCCC-HHHHHHHHHHHHHcCCCcceEEeeHHHHHhh
Confidence            3444455789986 3589984 5443    45567899  9999999999963

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=96.49  E-value=0.027  Score=50.70  Aligned_cols=84  Identities=13%  Similarity=0.182  Sum_probs=61.0

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCC--------Chhh
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYS--------DPDV  280 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~--------~~~~  280 (310)
                      ..+.++.+++..++||+  .-.+|.++.++.++..+|||+|+++.+.+.    ...+++|.+..+...        ++.-
T Consensus       108 s~~~L~~ir~~v~lPVl--~Kdfi~d~~qi~ea~~~GAD~VlLi~a~L~----~~~l~~l~~~a~~lGl~~lvevh~~eE  181 (272)
T 3tsm_A          108 APEFLTAARQACSLPAL--RKDFLFDPYQVYEARSWGADCILIIMASVD----DDLAKELEDTAFALGMDALIEVHDEAE  181 (272)
T ss_dssp             CHHHHHHHHHTSSSCEE--EESCCCSTHHHHHHHHTTCSEEEEETTTSC----HHHHHHHHHHHHHTTCEEEEEECSHHH
T ss_pred             CHHHHHHHHHhcCCCEE--ECCccCCHHHHHHHHHcCCCEEEEcccccC----HHHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence            45667778877889995  467788899999999999999999998774    245666666655542        2222


Q ss_pred             HHhhhhccCCceecccccc
Q 037779          281 LAEVSCGLGEAMVGIDLND  299 (310)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~  299 (310)
                       .+.+...|.++.|+.-.|
T Consensus       182 -l~~A~~~ga~iIGinnr~  199 (272)
T 3tsm_A          182 -MERALKLSSRLLGVNNRN  199 (272)
T ss_dssp             -HHHHTTSCCSEEEEECBC
T ss_pred             -HHHHHhcCCCEEEECCCC
Confidence             244557799999987544

>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A

Probab=96.47  E-value=0.25  Score=45.15  Aligned_cols=195  Identities=15%  Similarity=0.104  Sum_probs=105.5

Q ss_pred             cCCCccccccceeeecC-C-c--cccCCCHHHHHHHHHcCCcEEEecccccch-hh-hcCCC--CCCCCh----HHHHHH
Q 037779           20 KKSPFSVKVGLAQMLRG-G-V--IMDVVTPEQARIAEEAGACAVMALERVPAD-IR-AQGGV--ARMSDP----QLIKQI   87 (310)
Q Consensus        20 ~~sp~~~~~~~~~~l~~-g-~--i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d-~r-~~~G~--~~~~~~----~~i~~i   87 (310)
                      +.||+.....+.++|.. | .  +..+.|.-.|+.++++|+++|-.--    + .- ...|-  ..+-..    ..++.|
T Consensus         6 ~~~~~~~a~~lr~ll~~~~~~i~~~~a~D~~sA~l~e~aGf~ai~vsG----~~~a~s~~G~pD~~~vt~~em~~~~~~i   81 (307)
T 3lye_A            6 EDEPFSGAKKLRHLLENTDELIVCPGVYDGLSARTAMELGFKSLYMTG----AGTTASRLGQPDLAIAQLHDMRDNADMI   81 (307)
T ss_dssp             --CTTCHHHHHHHHHHHCCCCEEEEEECSHHHHHHHHHTTCSCEEECH----HHHHHHHHCCCSSSCSCHHHHHHHHHHH
T ss_pred             CCCchhHHHHHHHHHhCCCCeEEEecCcCHHHHHHHHHcCCCEEEecc----HHHHHHhcCCCCCCCCCHHHHHHHHHhh
Confidence            35565555566666754 3 2  2356778899999999999973200    0 00 00111  111112    244566


Q ss_pred             Hhhc--CcceEeeccc--cch----HHHHHHHHcCCCeeeecCC--------------CChhHHHHHHHh-------cCC
Q 037779           88 KSSV--TIPVMAKARI--GHF----VEAQILEAIGVDYVDESEV--------------LTPADEENHINK-------HNF  138 (310)
Q Consensus        88 ~~~~--~lPv~~kd~i--~~~----~~~~~~~~aGad~v~~~~~--------------~~~~~~~~~~~~-------~~~  138 (310)
                      ++.+  ++||++..-.  +..    ..+..+.++||..|.+-+.              .+..+....++.       .+.
T Consensus        82 ~r~~~~~~PviaD~d~Gyg~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~  161 (307)
T 3lye_A           82 ANLDPFGPPLIADMDTGYGGPIMVARTVEHYIRSGVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLRS  161 (307)
T ss_dssp             HTSSTTSCCEEEECTTCSSSHHHHHHHHHHHHHTTCCEEEECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             hccCCCCCcEEEECCCCCCCHHHHHHHHHHHHHcCCeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCC
Confidence            6655  4999885322  222    3456777899999983222              233344444422       134


Q ss_pred             CCcEEeecCCH-----HHH----HHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCc
Q 037779          139 RVPFVCGCRNL-----GES----LRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAP  209 (310)
Q Consensus       139 ~l~v~~~v~t~-----~ea----~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~  209 (310)
                      ++.+.+-+...     +|+    +...++|||.|.+.+.                                       .+
T Consensus       162 d~~I~ARTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~~~---------------------------------------~~  202 (307)
T 3lye_A          162 DFVLIARTDALQSLGYEECIERLRAARDEGADVGLLEGF---------------------------------------RS  202 (307)
T ss_dssp             CCEEEEEECCHHHHCHHHHHHHHHHHHHTTCSEEEECCC---------------------------------------SC
T ss_pred             CeEEEEechhhhccCHHHHHHHHHHHHHCCCCEEEecCC---------------------------------------CC
Confidence            55555555442     222    2234577777777532                                       02


Q ss_pred             HHHHHHHHhcC-CCCEEE-EccCCCCCH-HHHHHHHHcCCCEEEEccccccC
Q 037779          210 YDLVMQTKQLG-RLPVVH-FAAGGVATP-ADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       210 ~~l~~~i~~~~-~iPVv~-ia~GGI~t~-~di~~~~~~GadgV~VGsai~~~  258 (310)
                      .+.++.+.+.. ++|+++ +..+|- +| -...++.++|+.-|+.+..++++
T Consensus       203 ~~~~~~i~~~~~~~Pv~~n~~~~g~-~p~~t~~eL~~lGv~~v~~~~~~~ra  253 (307)
T 3lye_A          203 KEQAAAAVAALAPWPLLLNSVENGH-SPLITVEEAKAMGFRIMIFSFATLAP  253 (307)
T ss_dssp             HHHHHHHHHHHTTSCBEEEEETTSS-SCCCCHHHHHHHTCSEEEEETTTHHH
T ss_pred             HHHHHHHHHHccCCceeEEeecCCC-CCCCCHHHHHHcCCeEEEEChHHHHH
Confidence            22333443332 367743 235653 23 35788889999999999987763

>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*

Probab=96.45  E-value=0.35  Score=44.08  Aligned_cols=196  Identities=17%  Similarity=0.132  Sum_probs=115.6

Q ss_pred             HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CCC
Q 037779           47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EVL  124 (310)
Q Consensus        47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~~  124 (310)
                      ..+++++.++..|.++-  +... .+.|...  ....++...+ .++||.++ |.-.+++.+..+.++|-+.|-++ +.+
T Consensus        33 il~AAee~~sPvIlq~s--~g~~-~y~g~~~--~~~~v~~~a~-~~VPValHlDHg~~~e~~~~ai~~GFtSVMiDgS~~  106 (305)
T 1rvg_A           33 VLEAAEEQRSPVILALS--EGAM-KYGGRAL--TLMAVELAKE-ARVPVAVHLDHGSSYESVLRALRAGFTSVMIDKSHE  106 (305)
T ss_dssp             HHHHHHHTTCCEEEEEE--HHHH-HHHHHHH--HHHHHHHHHH-CSSCEEEEEEEECSHHHHHHHHHTTCSEEEECCTTS
T ss_pred             HHHHHHHhCCCEEEECC--hhHH-hhCCHHH--HHHHHHHHHh-CCCcEEEECCCCCCHHHHHHHHHcCCCeeeeCCCCC
Confidence            46777778888875551  1111 2222100  0234455555 89999886 44335677888888999998633 223


Q ss_pred             Chh-------HHHHHHHhcCCCC----------c----EEe---ecCCHHHHHHHH-HhCCCEEEEe-cCCCCCchHHHH
Q 037779          125 TPA-------DEENHINKHNFRV----------P----FVC---GCRNLGESLRRI-REGAAMIRTK-GEAGTGNIVEAV  178 (310)
Q Consensus       125 ~~~-------~~~~~~~~~~~~l----------~----v~~---~v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~~~~  178 (310)
                      +.+       ++.+..++.+..+          .    ...   -.++++|+.+.. +.|+|.+.+. |..++..     
T Consensus       107 p~eENi~~Tk~vv~~ah~~gvsVEaELG~vgg~Ed~~~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Y-----  181 (305)
T 1rvg_A          107 DFETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFMERTGADYLAVAIGTSHGAY-----  181 (305)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCSCC------CCTTCCCHHHHHHHHHHHCCSEEEECSSCCSSSB-----
T ss_pred             CHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCccccccccccCCHHHHHHHHHHHCCCEEEEecCcccccc-----
Confidence            333       3334444333211          1    000   025688888766 5799988765 4433211     


Q ss_pred             HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccC---------------------CCCCHHH
Q 037779          179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAG---------------------GVATPAD  237 (310)
Q Consensus       179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~G---------------------GI~t~~d  237 (310)
                                   +. +.        ...-++++++.+.+..++|+|.=-++                     |+ ..++
T Consensus       182 -------------k~-~g--------~p~L~~~~L~~I~~~~~vpLVlHGgSsv~~~~~~~~~~~gg~~~~~~G~-p~e~  238 (305)
T 1rvg_A          182 -------------KG-KG--------RPFIDHARLERIARLVPAPLVLHGASAVPPELVERFRASGGEIGEAAGI-HPED  238 (305)
T ss_dssp             -------------CS-SS--------SCCCCHHHHHHHHHHCCSCEEECSCCCCCHHHHHHHHHTTCCCCSCBCC-CHHH
T ss_pred             -------------CC-CC--------CCccCHHHHHHHHHhcCCCEEEeCCCCCcHHHHHHHHhhccccccCCCC-CHHH
Confidence                         10 00        01226888888888778998765555                     77 4799


Q ss_pred             HHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcC---CChhhH
Q 037779          238 AAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY---SDPDVL  281 (310)
Q Consensus       238 i~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~---~~~~~~  281 (310)
                      +++++++|..-|=++|.+-.     .+.+.+++.+.+.   .+|+.+
T Consensus       239 i~~ai~~GV~KiNi~Tdl~~-----A~~~~vr~~~~~~~~~~dpr~~  280 (305)
T 1rvg_A          239 IKKAISLGIAKINTDTDLRL-----AFTALIREALNKNPKEFDPRKY  280 (305)
T ss_dssp             HHHHHHTTEEEEEECHHHHH-----HHHHHHHHHHHHCTTCCCTHHH
T ss_pred             HHHHHHCCCeEEEEChHHHH-----HHHHHHHHHHHhCccccChHHH
Confidence            99999999999999997754     3444555555443   357654

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=96.42  E-value=0.04  Score=51.71  Aligned_cols=124  Identities=15%  Similarity=0.195  Sum_probs=75.3

Q ss_pred             cCcceEee--ccccchHHHHHHHHcCCCeeeecCCCChhHHHHHHHh-cCC-CCcEEeec----CCHHHHHHHHHhCCCE
Q 037779           91 VTIPVMAK--ARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINK-HNF-RVPFVCGC----RNLGESLRRIREGAAM  162 (310)
Q Consensus        91 ~~lPv~~k--d~i~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~-~~~-~l~v~~~v----~t~~ea~~a~~~Gad~  162 (310)
                      .++|++..  +.+...+.+..+..+|.=.++. ..++++++.+.+++ +.. .+.+.+.+    .+.+.+..+.+.|+|+
T Consensus        45 l~~Pii~apM~~vs~~~lA~avA~aGGlg~i~-~~~s~e~~~~~i~~vk~~~~l~vga~vg~~~~~~~~~~~lieaGvd~  123 (366)
T 4fo4_A           45 LNIPMVSASMDTVTEARLAIALAQEGGIGFIH-KNMSIEQQAAQVHQVKISGGLRVGAAVGAAPGNEERVKALVEAGVDV  123 (366)
T ss_dssp             ESSSEEECCCTTTCSHHHHHHHHHTTCEEEEC-SSSCHHHHHHHHHHHHTTTSCCCEEECCSCTTCHHHHHHHHHTTCSE
T ss_pred             cCCCEEeCCCCCCChHHHHHHHHHcCCceEee-cCCCHHHHHHHHHHHHhcCceeEEEEeccChhHHHHHHHHHhCCCCE
Confidence            46797664  3333444554555566544432 33577776666654 221 23333322    4567788888999999


Q ss_pred             EEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHH
Q 037779          163 IRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMM  241 (310)
Q Consensus       163 I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~  241 (310)
                      |.++.....+                                  ....+.++.+++.. ++||+   .|.+.|+++++++
T Consensus       124 I~idta~G~~----------------------------------~~~~~~I~~ik~~~p~v~Vi---~G~v~t~e~A~~a  166 (366)
T 4fo4_A          124 LLIDSSHGHS----------------------------------EGVLQRIRETRAAYPHLEII---GGNVATAEGARAL  166 (366)
T ss_dssp             EEEECSCTTS----------------------------------HHHHHHHHHHHHHCTTCEEE---EEEECSHHHHHHH
T ss_pred             EEEeCCCCCC----------------------------------HHHHHHHHHHHHhcCCCceE---eeeeCCHHHHHHH
Confidence            9875221100                                  00134456666543 67774   2678899999999


Q ss_pred             HHcCCCEEEEc
Q 037779          242 MQLGCDGVFVG  252 (310)
Q Consensus       242 ~~~GadgV~VG  252 (310)
                      .++|||+|.+|
T Consensus       167 ~~aGAD~I~vG  177 (366)
T 4fo4_A          167 IEAGVSAVKVG  177 (366)
T ss_dssp             HHHTCSEEEEC
T ss_pred             HHcCCCEEEEe
Confidence            99999999995

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=96.36  E-value=0.072  Score=46.47  Aligned_cols=123  Identities=17%  Similarity=0.179  Sum_probs=77.9

Q ss_pred             HHHHHhhcCcceEeeccccc-hHHHHHHHHcCCCeeeecCC-CChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCC
Q 037779           84 IKQIKSSVTIPVMAKARIGH-FVEAQILEAIGVDYVDESEV-LTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGA  160 (310)
Q Consensus        84 i~~i~~~~~lPv~~kd~i~~-~~~~~~~~~aGad~v~~~~~-~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Ga  160 (310)
                      +..+++.-=+||+....... .+.++.+.+.|++.+-...- ....+.++.+.+..+++.+.++ +.+.+++..+.+.||
T Consensus        20 ~~~l~~~~ii~V~r~~~~~~~~~~~~al~~gGv~~iel~~k~~~~~~~i~~l~~~~~~~~igagtvl~~d~~~~A~~aGA   99 (225)
T 1mxs_A           20 DAICEKARILPVITIAREEDILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGA   99 (225)
T ss_dssp             HHHHHHHSEEEEECCSCGGGHHHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTC
T ss_pred             HHHHHHCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHhCcccEEeeCeEeeHHHHHHHHHCCC
Confidence            34444333356665543332 24567888899999864321 2234555655554456776664 557789999999999


Q ss_pred             CEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHH
Q 037779          161 AMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAM  240 (310)
Q Consensus       161 d~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~  240 (310)
                      |++...+  .                                      +.+..+..++ ..+|++    -|++|++++.+
T Consensus       100 d~v~~p~--~--------------------------------------d~~v~~~~~~-~g~~~i----~G~~t~~e~~~  134 (225)
T 1mxs_A          100 QFVVTPG--I--------------------------------------TEDILEAGVD-SEIPLL----PGISTPSEIMM  134 (225)
T ss_dssp             SSEECSS--C--------------------------------------CHHHHHHHHH-CSSCEE----CEECSHHHHHH
T ss_pred             CEEEeCC--C--------------------------------------CHHHHHHHHH-hCCCEE----EeeCCHHHHHH
Confidence            9985421  1                                      1223333333 346773    25999999999


Q ss_pred             HHHcCCCEEEE
Q 037779          241 MMQLGCDGVFV  251 (310)
Q Consensus       241 ~~~~GadgV~V  251 (310)
                      +.++|+|.|.+
T Consensus       135 A~~~Gad~vk~  145 (225)
T 1mxs_A          135 GYALGYRRFKL  145 (225)
T ss_dssp             HHTTTCCEEEE
T ss_pred             HHHCCCCEEEE
Confidence            99999999988

>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A

Probab=96.34  E-value=0.38  Score=43.38  Aligned_cols=186  Identities=12%  Similarity=0.037  Sum_probs=101.5

Q ss_pred             ceeeecCCc-----cccCCCHHHHHHHHHcCCcEE-EecccccchhhhcCCCCCCCChHHHHHHH---hhcCcceEeecc
Q 037779           30 LAQMLRGGV-----IMDVVTPEQARIAEEAGACAV-MALERVPADIRAQGGVARMSDPQLIKQIK---SSVTIPVMAKAR  100 (310)
Q Consensus        30 ~~~~l~~g~-----i~~~~~~~~a~~~~~~Ga~~I-~~l~~~~~d~r~~~G~~~~~~~~~i~~i~---~~~~lPv~~kd~  100 (310)
                      +.++|+.|.     .....+++.++.+...|+|++ .+++..|.+            .+.+....   +..+.|++++..
T Consensus        30 ~k~~l~~G~~~~gl~~~~~~p~~~e~a~~~GaD~v~lDlEh~~~~------------~~~~~~~l~a~~~~~~~~~VRv~   97 (287)
T 2v5j_A           30 FKAALKAGRPQIGLWLGLSSSYSAELLAGAGFDWLLIDGEHAPNN------------VQTVLTQLQAIAPYPSQPVVRPS   97 (287)
T ss_dssp             HHHHHHTTCCEEEEEECSCCHHHHHHHHTSCCSEEEEESSSSSCC------------HHHHHHHHHHHTTSSSEEEEECS
T ss_pred             HHHHHHCCCcEEEEEEECCCHHHHHHHHhCCCCEEEEeCCCccch------------HHHHHHHHHHHHhcCCCEEEEEC
Confidence            445555554     455677999999999999987 334222221            22332222   233667776644


Q ss_pred             ccchHHHHHHHHcCCCeeeecCCCChhHHHHHHHh-cC-------C----------------------CCcEEeecCCHH
Q 037779          101 IGHFVEAQILEAIGVDYVDESEVLTPADEENHINK-HN-------F----------------------RVPFVCGCRNLG  150 (310)
Q Consensus       101 i~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~-~~-------~----------------------~l~v~~~v~t~~  150 (310)
                      -.+..+++.+..+|++.|..+...+++++.+.... +.       .                      .+.+++-+.|++
T Consensus        98 ~~d~~di~~~ld~ga~~ImlP~V~saeea~~~~~~~~~~p~G~Rg~g~~~~ra~~~g~~~~y~~~~~~~~~vi~mIEt~~  177 (287)
T 2v5j_A           98 WNDPVQIKQLLDVGTQTLLVPMVQNADEAREAVRATRYPPAGIRGVGSALARASRWNRIPDYLQKANDQMCVLVQIETRE  177 (287)
T ss_dssp             SSCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHTSCTTTSCCCGGGTTTGGGTTTTSTTHHHHHHHHCEEEEEECSHH
T ss_pred             CCCHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHhccCccCccccccchhhhhhccchhhhHhhcCCCcEEEEEECcHH
Confidence            33334667778899999988777677776655443 11       0                      145666667766


Q ss_pred             HHHHHHH----hCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHh---cCCCC
Q 037779          151 ESLRRIR----EGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQ---LGRLP  223 (310)
Q Consensus       151 ea~~a~~----~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~---~~~iP  223 (310)
                      -+..+.+    .|.|.+.+. +         .+...+++.    ..+.. .+.         -...++.+..   ...+|
T Consensus       178 av~n~deIaa~~~vD~l~iG-~---------~DLs~~lg~----~~~~~-~p~---------v~~a~~~iv~aaraaG~~  233 (287)
T 2v5j_A          178 AMKNLPQILDVEGVDGVFIG-P---------ADLSADMGY----AGNPQ-HPE---------VQAAIEQAIVQIRESGKA  233 (287)
T ss_dssp             HHHTHHHHHTSTTEEEEEEC-H---------HHHHHHTTS----TTCCC-SHH---------HHHHHHHHHHHHHHTTSE
T ss_pred             HHHHHHHHhCcCCCCEEEEC-H---------HHHHHHhCC----CCCCC-CHH---------HHHHHHHHHHHHHHcCCe
Confidence            4433322    256666663 2         011111110    00000 000         0122222211   23567


Q ss_pred             EEEEccCCCCCHHHHHHHHHcCCCEEEEcccc
Q 037779          224 VVHFAAGGVATPADAAMMMQLGCDGVFVGSGV  255 (310)
Q Consensus       224 Vv~ia~GGI~t~~di~~~~~~GadgV~VGsai  255 (310)
                      +.++  .  .+++.+..+++.|++.+.+|+-.
T Consensus       234 ~gv~--~--~d~~~a~~~~~~G~~~~s~~~d~  261 (287)
T 2v5j_A          234 PGIL--I--ANEQLAKRYLELGALFVAVGVDT  261 (287)
T ss_dssp             EEEE--C--CCHHHHHHHHHTTCSEEEEEEHH
T ss_pred             eEEe--c--CCHHHHHHHHHhCCCEEEECcHH
Confidence            6433  2  27999999999999999999943

>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}

Probab=96.21  E-value=0.55  Score=43.04  Aligned_cols=174  Identities=13%  Similarity=0.088  Sum_probs=100.4

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccch--hh-hcCCC--CCCCC----hHHHHHHHhhc-CcceEeeccc--cc----h
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPAD--IR-AQGGV--ARMSD----PQLIKQIKSSV-TIPVMAKARI--GH----F  104 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d--~r-~~~G~--~~~~~----~~~i~~i~~~~-~lPv~~kd~i--~~----~  104 (310)
                      .+.|+-.|+.++++|+++|- +    ++  .- ...|.  ...-.    ...++.|++.+ ++||++..-.  +.    .
T Consensus        45 ~ayD~~sA~i~e~aGfdai~-v----s~~~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~~~PviaD~d~Gyg~~~~v~  119 (318)
T 1zlp_A           45 GVQDALSAAVVEKTGFHAAF-V----SGYSVSAAMLGLPDFGLLTTTEVVEATRRITAAAPNLCVVVDGDTGGGGPLNVQ  119 (318)
T ss_dssp             EECSHHHHHHHHHTTCSEEE-E----CHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHHHSSSSEEEEECTTCSSSHHHHH
T ss_pred             cCCCHHHHHHHHHcCCCEEE-E----CcHHHhhHhcCCCCCCCCCHHHHHHHHHHHHhhccCCCEEEeCCCCCCCHHHHH
Confidence            45677889999999999982 2    12  11 11111  11111    23456777788 9999985332  32    2


Q ss_pred             HHHHHHHHcCCCeeeecCC--------------CChhHHHHHHHh-----cCCCCcEEeecCCHH---------HHHHHH
Q 037779          105 VEAQILEAIGVDYVDESEV--------------LTPADEENHINK-----HNFRVPFVCGCRNLG---------ESLRRI  156 (310)
Q Consensus       105 ~~~~~~~~aGad~v~~~~~--------------~~~~~~~~~~~~-----~~~~l~v~~~v~t~~---------ea~~a~  156 (310)
                      ..+..+.++||.+|.+-+.              .+..+....++.     ...+..+..-+....         .++...
T Consensus       120 ~tv~~l~~aGaagv~iED~~~~k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ARtda~a~~gl~~ai~Ra~Ay~  199 (318)
T 1zlp_A          120 RFIRELISAGAKGVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVARTDARAPHGLEEGIRRANLYK  199 (318)
T ss_dssp             HHHHHHHHTTCCEEEEECBCSSCCCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEECTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcEEEECCCCCCccccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEEEeeHHhhhcCHHHHHHHHHHHH
Confidence            3456677899999983221              222233333322     123345555443321         223344


Q ss_pred             HhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEE-EccCCCCCH
Q 037779          157 REGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVH-FAAGGVATP  235 (310)
Q Consensus       157 ~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~-ia~GGI~t~  235 (310)
                      ++|||.|.+.+.                                       .+.+.++.+.+..++|+++ +.++|-...
T Consensus       200 eAGAd~i~~e~~---------------------------------------~~~e~~~~i~~~l~~P~lan~~~~g~~~~  240 (318)
T 1zlp_A          200 EAGADATFVEAP---------------------------------------ANVDELKEVSAKTKGLRIANMIEGGKTPL  240 (318)
T ss_dssp             HTTCSEEEECCC---------------------------------------CSHHHHHHHHHHSCSEEEEEECTTSSSCC
T ss_pred             HcCCCEEEEcCC---------------------------------------CCHHHHHHHHHhcCCCEEEEeccCCCCCC
Confidence            678887776521                                       1345666676666789842 335553223


Q ss_pred             HHHHHHHHcCCCEEEEccccccC
Q 037779          236 ADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       236 ~di~~~~~~GadgV~VGsai~~~  258 (310)
                      -+..++.++|+.-|..|...+++
T Consensus       241 ~~~~eL~~lGv~~v~~~~~~~ra  263 (318)
T 1zlp_A          241 HTPEEFKEMGFHLIAHSLTAVYA  263 (318)
T ss_dssp             CCHHHHHHHTCCEEEECSHHHHH
T ss_pred             CCHHHHHHcCCeEEEEchHHHHH
Confidence            45788999999999999998874

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=96.18  E-value=0.063  Score=49.99  Aligned_cols=113  Identities=19%  Similarity=0.222  Sum_probs=73.4

Q ss_pred             HHHHHHHHHc--CCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeeec
Q 037779           45 PEQARIAEEA--GACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDES  121 (310)
Q Consensus        45 ~~~a~~~~~~--Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~~  121 (310)
                      .+.++.+.+.  |++.+. +     +. .+ |.. ....+.++.+++.+ ++||+++... +.+.++.+.++|||+|...
T Consensus       120 ~~~~~~l~~~~~g~~~i~-i-----~~-~~-g~~-~~~~~~i~~lr~~~~~~~vi~g~v~-t~e~A~~a~~aGaD~I~v~  189 (351)
T 2c6q_A          120 FEQLEQILEAIPQVKYIC-L-----DV-AN-GYS-EHFVEFVKDVRKRFPQHTIMAGNVV-TGEMVEELILSGADIIKVG  189 (351)
T ss_dssp             HHHHHHHHHHCTTCCEEE-E-----EC-SC-TTB-HHHHHHHHHHHHHCTTSEEEEEEEC-SHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHhccCCCCEEE-E-----Ee-cC-CCc-HHHHHHHHHHHHhcCCCeEEEEeCC-CHHHHHHHHHhCCCEEEEC
Confidence            3567777776  899863 2     11 11 110 01146788888888 8999876543 4578889999999999532


Q ss_pred             C--------------CCChhHHHHHHHh--cCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEec
Q 037779          122 E--------------VLTPADEENHINK--HNFRVPFVC--GCRNLGESLRRIREGAAMIRTKG  167 (310)
Q Consensus       122 ~--------------~~~~~~~~~~~~~--~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~g  167 (310)
                      .              ..+....+..+.+  ...++++++  ++.|..++.+++.+||+.|.+..
T Consensus       190 ~g~G~~~~~r~~~g~~~p~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~  253 (351)
T 2c6q_A          190 IGPGSVCTTRKKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGG  253 (351)
T ss_dssp             SSCSTTBCHHHHHCBCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEEST
T ss_pred             CCCCcCcCccccCCCCccHHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccH
Confidence            1              0111112222211  124688888  79999999999999999998853

>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}

Probab=96.17  E-value=0.014  Score=52.22  Aligned_cols=46  Identities=17%  Similarity=0.135  Sum_probs=38.6

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      ..+.++.+.+..++|+.  ..|||.+. ++.+++ +||+-|++||+.++.
T Consensus        64 n~~~i~~i~~~~~~pv~--vgGGir~~-~~~~~l-~Ga~~Viigs~a~~~  109 (260)
T 2agk_A           64 NDDAAREALQESPQFLQ--VGGGINDT-NCLEWL-KWASKVIVTSWLFTK  109 (260)
T ss_dssp             CHHHHHHHHHHSTTTSE--EESSCCTT-THHHHT-TTCSCEEECGGGBCT
T ss_pred             CHHHHHHHHhcCCceEE--EeCCCCHH-HHHHHh-cCCCEEEECcHHHhh
Confidence            35667777776778994  59999876 999999 999999999999984

>3qw3_A Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (OMPDCASE-OPRTASE,...; orotidine monophosphate decarboxylase; 1.70A {Leishmania infantum}

Probab=96.17  E-value=0.08  Score=47.12  Aligned_cols=168  Identities=13%  Similarity=0.168  Sum_probs=85.2

Q ss_pred             HHHHHHHhh--cCcceEeecccc----chHH-HHHHH-HcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHH--H
Q 037779           82 QLIKQIKSS--VTIPVMAKARIG----HFVE-AQILE-AIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLG--E  151 (310)
Q Consensus        82 ~~i~~i~~~--~~lPv~~kd~i~----~~~~-~~~~~-~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~--e  151 (310)
                      +.++++.+.  .+.+|+..-..+    +... ++.+. ..|+|.+..+......-+...+...+.++.+++.+.+..  +
T Consensus        64 ~~l~~l~~~~~~g~~VflDlK~~DI~nTv~~~a~~~~~~lg~d~vTvh~~~G~~~l~~~~~~~~~gv~vL~~tS~~~~~~  143 (255)
T 3qw3_A           64 AALSEVIRAVPAGIPVVLDAKRGDIADTADAYATSAFKHLNAHAITASPYMGSDSLQPFMRYPDKAVFVLCKTSNKGSND  143 (255)
T ss_dssp             HHHHHHHHHSCTTCCBEEEEEECCCHHHHHHHHHHHHTTSCCSEEEECCTTCHHHHHHHHTCTTSEEEEEEECCSGGGGT
T ss_pred             HHHHHHHHHhcCCCeEEEEeecCCcHHHHHHHHHHHHHHcCCCEEEEcccCCHHHHHHHHHhhCCceEEEEeCCCccHHH
Confidence            355555543  467887754443    2222 34555 499999987665554444433332334466666665542  1


Q ss_pred             HHHHHHhCCCEEEEecCCCCCchHHHHHHHHH-hhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEcc
Q 037779          152 SLRRIREGAAMIRTKGEAGTGNIVEAVRHVRS-VMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAA  229 (310)
Q Consensus       152 a~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~  229 (310)
                      ..   +.     .+.+   .+.....++.++. ..       ....++++   .+-..+.+ +..+++. .+.+++ +  
T Consensus       144 ~q---~~-----~~~~---~~~~~~V~~~a~~~~~-------~~g~~GvV---~~at~~~e-~~~ir~~~~~~~~l-~--  198 (255)
T 3qw3_A          144 LQ---CL-----RVGD---RYLYEAVAERAEGPWN-------VNGNVGLV---VGATDPVA-LARVRARAPTLWFL-V--  198 (255)
T ss_dssp             TT---TS-----EETT---EEHHHHHHHHHHTGGG-------GGSCEEEE---ECSSCHHH-HHHHHHHCSSCCEE-E--
T ss_pred             HH---hc-----ccCC---CCHHHHHHHHHHHHhh-------hhCCeEEE---ECCCCHHH-HHHHHHHCCCCeEE-E--
Confidence            10   00     1110   0111223333322 10       00111110   00011233 3455543 344553 2  


Q ss_pred             CCCCC-HHHHHHHHHcCCC----E--EEEccccccCCCHHHHHHHHHHHHHc
Q 037779          230 GGVAT-PADAAMMMQLGCD----G--VFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       230 GGI~t-~~di~~~~~~Gad----g--V~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      =||+. ..+..++++.|+|    +  ++||+.|++++||.+.++++.+.++.
T Consensus       199 PGIg~qg~tp~~a~~~G~d~~~~~~livvGR~I~~A~dp~~aa~~i~~~i~~  250 (255)
T 3qw3_A          199 PGIGAQGGSLKASLDAGLRADGSGMLINVSRGLARAADPRAAAKELCEEINA  250 (255)
T ss_dssp             CCC-----CHHHHHHHHCCTTSCCEEEEESHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             CCcCCCCCCHHHHHHcCCCcccCeeEEEeChhhcCCCCHHHHHHHHHHHHHH
Confidence            44431 2356777788999    5  99999999999999999999988874

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=96.17  E-value=0.043  Score=51.77  Aligned_cols=117  Identities=17%  Similarity=0.164  Sum_probs=73.9

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeecC--
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESE--  122 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~--  122 (310)
                      .+.++.+.++|++.+. ++..+. ...+.+.  ....+.++.+++.+++||+++.. .+.+.++.+.++|||.|....  
T Consensus       168 ~e~a~~~~~agad~i~-i~~~~~-~~~~~~~--~~~~~~i~~l~~~~~~pvi~ggi-~t~e~a~~~~~~Gad~i~vg~Gg  242 (393)
T 2qr6_A          168 REIAPIVIKAGADLLV-IQGTLI-SAEHVNT--GGEALNLKEFIGSLDVPVIAGGV-NDYTTALHMMRTGAVGIIVGGGE  242 (393)
T ss_dssp             HHHHHHHHHTTCSEEE-EECSSC-CSSCCCC-------CHHHHHHHCSSCEEEECC-CSHHHHHHHHTTTCSEEEESCCS
T ss_pred             HHHHHHHHHCCCCEEE-EeCCcc-ccccCCC--cccHHHHHHHHHhcCCCEEECCc-CCHHHHHHHHHcCCCEEEECCCc
Confidence            4678888889999873 320000 0011111  01355688899999999999643 345788889999999987432  


Q ss_pred             ---------CCChhHHHHHHHh--------cCC-CCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779          123 ---------VLTPADEENHINK--------HNF-RVPFVC--GCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       123 ---------~~~~~~~~~~~~~--------~~~-~l~v~~--~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                               ..+..+.+..+.+        .+. .+++++  ++++..++.+++.+|||.|.+.
T Consensus       243 ~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GGI~~~~dv~kalalGA~~V~iG  306 (393)
T 2qr6_A          243 NTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGSIENSGDVVKAIACGADAVVLG  306 (393)
T ss_dssp             CCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSCCSHHHHHHHHHHTCSEEEEC
T ss_pred             ccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence                     1222233322222        121 277877  4999999999999999999885

>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*

Probab=96.15  E-value=0.41  Score=43.61  Aligned_cols=195  Identities=12%  Similarity=0.062  Sum_probs=111.4

Q ss_pred             HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhh-cCcceEee-ccccchHHHHHHHHcCCCeeeec-CC
Q 037779           47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSS-VTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EV  123 (310)
Q Consensus        47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~-~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~  123 (310)
                      ..+++++.++..|.++-  + ....+.|....  ...++...+. .++||.++ |.-.+++....+.++|-+.|-++ +.
T Consensus        33 vi~AAee~~sPvIlq~s--~-g~~~y~g~~~~--~~~v~~aa~~~~~VPValHLDHg~~~e~~~~ai~~GFtSVMiDgS~  107 (307)
T 3n9r_A           33 IFEAGNEENSPLFIQAS--E-GAIKYMGIDMA--VGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASH  107 (307)
T ss_dssp             HHHHHHHHTCCEEEEEE--H-HHHHHHCHHHH--HHHHHHHHHHSTTSCEEEEEEEECSHHHHHHHHHHTCSEEEECCTT
T ss_pred             HHHHHHHhCCCEEEEcC--h-hhhhhCCHHHH--HHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHHhCCCcEEEECCC
Confidence            46677777888775551  1 11122221000  1223344444 68999886 44335677788889999888643 22


Q ss_pred             CChh-------HHHHHHHhcCCCCcEEe-------------------ecCCHHHHHHHH-HhCCCEEEEe-cCCCCCchH
Q 037779          124 LTPA-------DEENHINKHNFRVPFVC-------------------GCRNLGESLRRI-REGAAMIRTK-GEAGTGNIV  175 (310)
Q Consensus       124 ~~~~-------~~~~~~~~~~~~l~v~~-------------------~v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~  175 (310)
                      ++.+       ++.+..++.+  +.+=.                   -.++++|+.+.. +.|+|.+.+. |..++.   
T Consensus       108 ~p~eeNi~~Tk~vv~~ah~~g--vsVEaELG~igG~Ed~~~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~---  182 (307)
T 3n9r_A          108 HAFEENLELTSKVVKMAHNAG--VSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGA---  182 (307)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTT--CEEEEEESCCCCC----------CCSCCHHHHHHHHHHHCCSEEEECSSCCSSS---
T ss_pred             CCHHHHHHHHHHHHHHHHHcC--CeEEEEeeeeccccCCcccccccccCCCHHHHHHHHHHHCCCEEEEecCCcccc---
Confidence            3333       3333443333  21111                   125788888765 5899998764 443221   


Q ss_pred             HHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccC---------------------CCCC
Q 037779          176 EAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAG---------------------GVAT  234 (310)
Q Consensus       176 ~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~G---------------------GI~t  234 (310)
                                     ++. ..        ...-++++++.+++..++|+|.=-++                     |+ .
T Consensus       183 ---------------Yk~-~~--------~p~Ld~~~L~~I~~~~~~PLVlHGgS~vp~~~~~~~~~~gg~~~~~~G~-p  237 (307)
T 3n9r_A          183 ---------------FKF-KG--------EPKLDFERLQEVKRLTNIPLVLHGASAIPDNVRKSYLDAGGDLKGSKGV-P  237 (307)
T ss_dssp             ---------------BCC-SS--------SCCCCHHHHHHHHHHHCSCEEESSCCCCCHHHHHHHHHTTCCCTTCBCC-C
T ss_pred             ---------------cCC-CC--------CCccCHHHHHHHHhcCCCCeEEeCCCCcchHHHHHHHHhcCccCCCCCC-C
Confidence                           010 00        01225777777766567888654344                     87 4


Q ss_pred             HHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcC---CChhhH
Q 037779          235 PADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY---SDPDVL  281 (310)
Q Consensus       235 ~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~---~~~~~~  281 (310)
                      .+++++++++|..-|=++|.+-.     .+.+.+++.+.+.   -+|+.+
T Consensus       238 ~e~i~~ai~~GV~KiNi~Tdl~~-----a~~~~vr~~~~~~~~~~dpr~~  282 (307)
T 3n9r_A          238 FEFLQESVKGGINKVNTDTDLRI-----AFIAEVRKVANEDKSQFDLRKF  282 (307)
T ss_dssp             HHHHHHHHHTTEEEEEECHHHHH-----HHHHHHHHHHHHCTTCCCHHHH
T ss_pred             HHHHHHHHHcCceEEEechHHHH-----HHHHHHHHHHHhCCCcCCHHHH
Confidence            89999999999999999997754     2344444444332   356555

>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*

Probab=96.11  E-value=0.82  Score=41.94  Aligned_cols=178  Identities=11%  Similarity=0.088  Sum_probs=103.8

Q ss_pred             HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhh-cCcceEee-ccccchHHHHHHHHcCCCeeeec-CC
Q 037779           47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSS-VTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EV  123 (310)
Q Consensus        47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~-~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~  123 (310)
                      ..+++++.++..|.++-  +. ...+.|...+  ...++...+. .++||.++ |.-.+++.+..+.++|-+.|-++ +.
T Consensus        34 il~AAee~~sPvIlq~s--~g-~~~y~g~~~~--~~~v~~aa~~~~~VPValHlDHg~~~e~i~~ai~~GFtSVMiDgS~  108 (323)
T 2isw_A           34 IMKAVVQLKSPVILQCS--RG-ALKYSDMIYL--KKLCEAALEKHPDIPICIHLDHGDTLESVKMAIDLGFSSVMIDASH  108 (323)
T ss_dssp             HHHHHHHTTCCEEEEEE--HH-HHHHTTTHHH--HHHHHHHHHHCTTSCEEEEEEEECSHHHHHHHHHTTCSEEEECCTT
T ss_pred             HHHHHHHhCCCEEEECC--hh-HHHhCCHHHH--HHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHHcCCCeEEecCCC
Confidence            46777778888876651  11 1223332000  2234444445 78999886 44335677888899999988633 22


Q ss_pred             CChh-------HHHHHHHhcCCCCcEEe----------------ecCCHHHHHHHH-HhCCCEEEEe-cCCCCCchHHHH
Q 037779          124 LTPA-------DEENHINKHNFRVPFVC----------------GCRNLGESLRRI-REGAAMIRTK-GEAGTGNIVEAV  178 (310)
Q Consensus       124 ~~~~-------~~~~~~~~~~~~l~v~~----------------~v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~~~~  178 (310)
                      ++.+       ++.+..++  .|+.+=.                -.++++|+.+.. +.|+|.+.+. |..++..     
T Consensus       109 ~p~eENi~~Tk~vv~~ah~--~gvsVEaELG~vgg~Ed~v~~~~~yTdPeea~~Fv~~TgvD~LAvaiGt~HG~Y-----  181 (323)
T 2isw_A          109 HPFDENVRITKEVVAYAHA--RSVSVEAELGTLGGIEEDVQNTVQLTEPQDAKKFVELTGVDALAVAIGTSHGAY-----  181 (323)
T ss_dssp             SCHHHHHHHHHHHHHHHHT--TTCEEEEEESCC----------CCCCCHHHHHHHHHHHCCSEEEECSSCCSSSB-----
T ss_pred             CCHHHHHHHHHHHHHHHHH--cCCeEEEEeCCccCCccCcccccccCCHHHHHHHHHHHCCCEEEEecCcccccc-----
Confidence            3333       23333332  2222211                126788888766 6899988765 4433211     


Q ss_pred             HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccC---------------------CCCCHHH
Q 037779          179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAG---------------------GVATPAD  237 (310)
Q Consensus       179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~G---------------------GI~t~~d  237 (310)
                                   +. +.++      ...-++++++.+.+..++|+|.=-++                     |+ ..++
T Consensus       182 -------------k~-~~~p------~~~L~~~~L~~I~~~~~vpLVlHGgSsvp~~~~~~~~~~gg~~~~~~Gv-p~e~  240 (323)
T 2isw_A          182 -------------KF-KSES------DIRLAIDRVKTISDLTGIPLVMHGSSSVPKDVKDMINKYGGKMPDAVGV-PIES  240 (323)
T ss_dssp             -------------CC-CC----------CCCCHHHHHHHHHHCSCEEECSCCCCCHHHHHHHHHTTCCCTTCBCC-CHHH
T ss_pred             -------------CC-CCCc------ccccCHHHHHHHHHHhCCCeEEECCCCCCHHHHHHHHHhccccccCCCC-CHHH
Confidence                         10 0000      10124677888877668898653233                     88 5899


Q ss_pred             HHHHHHcCCCEEEEcccccc
Q 037779          238 AAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       238 i~~~~~~GadgV~VGsai~~  257 (310)
                      +++++++|..-|=++|.+-.
T Consensus       241 i~~ai~~GV~KiNi~Tdl~~  260 (323)
T 2isw_A          241 IVHAIGEGVCKINVDSDSRM  260 (323)
T ss_dssp             HHHHHHTTEEEEEECHHHHH
T ss_pred             HHHHHHCCCeEEEEChHHHH
Confidence            99999999999999997754

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=96.08  E-value=0.05  Score=48.36  Aligned_cols=81  Identities=14%  Similarity=0.168  Sum_probs=55.9

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcC--------CChhh
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY--------SDPDV  280 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~--------~~~~~  280 (310)
                      ..+.++.+++..++||  ..-++|.++.++.+++++|||+|++|...+. +.    ++++.+..+.+        ++..-
T Consensus        94 ~~~~l~~i~~~v~lPv--l~kdfI~d~~qi~~a~~~GAD~VlL~~~~l~-~~----l~~l~~~a~~lGl~~lvev~~~~E  166 (254)
T 1vc4_A           94 SLLDLKRVREAVDLPL--LRKDFVVDPFMLEEARAFGASAALLIVALLG-EL----TGAYLEEARRLGLEALVEVHTERE  166 (254)
T ss_dssp             CHHHHHHHHHHCCSCE--EEESCCCSHHHHHHHHHTTCSEEEEEHHHHG-GG----HHHHHHHHHHHTCEEEEEECSHHH
T ss_pred             CHHHHHHHHHhcCCCE--EECCcCCCHHHHHHHHHcCCCEEEECccchH-HH----HHHHHHHHHHCCCeEEEEECCHHH
Confidence            4556677777778999  4588999999999999999999999999887 43    34444322221        22222


Q ss_pred             HHhhhhccCCceecccc
Q 037779          281 LAEVSCGLGEAMVGIDL  297 (310)
Q Consensus       281 ~~~~~~~~~~~~~~~~~  297 (310)
                      + +.+..+|.++.|+..
T Consensus       167 ~-~~a~~~gad~IGvn~  182 (254)
T 1vc4_A          167 L-EIALEAGAEVLGINN  182 (254)
T ss_dssp             H-HHHHHHTCSEEEEES
T ss_pred             H-HHHHHcCCCEEEEcc
Confidence            2 345566888888744

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=96.06  E-value=0.084  Score=45.74  Aligned_cols=113  Identities=16%  Similarity=0.158  Sum_probs=72.1

Q ss_pred             CHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCee--ee
Q 037779           44 TPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYV--DE  120 (310)
Q Consensus        44 ~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v--~~  120 (310)
                      +.+.++.+.++|++.|. +.   .... .... -....+.++.+++.. +.++.+..  .+.++++.+.++|+|+|  ..
T Consensus        90 ~~~~i~~~~~~Gad~V~-l~---~~~~-~~~~-~~~~~~~i~~i~~~~~~~~v~~~~--~t~~ea~~a~~~Gad~i~~~v  161 (234)
T 1yxy_A           90 TMTEVDQLAALNIAVIA-MD---CTKR-DRHD-GLDIASFIRQVKEKYPNQLLMADI--STFDEGLVAHQAGIDFVGTTL  161 (234)
T ss_dssp             SHHHHHHHHTTTCSEEE-EE---CCSS-CCTT-CCCHHHHHHHHHHHCTTCEEEEEC--SSHHHHHHHHHTTCSEEECTT
T ss_pred             hHHHHHHHHHcCCCEEE-Ec---cccc-CCCC-CccHHHHHHHHHHhCCCCeEEEeC--CCHHHHHHHHHcCCCEEeeec
Confidence            46889999999999983 31   0000 0000 001146788888776 67776643  34467888889999999  31


Q ss_pred             c---CC---CCh--hHHHHHHHhcCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779          121 S---EV---LTP--ADEENHINKHNFRVPFVC--GCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       121 ~---~~---~~~--~~~~~~~~~~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                      .   ..   ...  .+..+.+.+.  ++++++  +++|.+++..+.+.|+|.+.+.
T Consensus       162 ~g~~~~~~~~~~~~~~~i~~~~~~--~ipvia~GGI~s~~~~~~~~~~Gad~v~vG  215 (234)
T 1yxy_A          162 SGYTPYSRQEAGPDVALIEALCKA--GIAVIAEGKIHSPEEAKKINDLGVAGIVVG  215 (234)
T ss_dssp             TTSSTTSCCSSSCCHHHHHHHHHT--TCCEEEESCCCSHHHHHHHHTTCCSEEEEC
T ss_pred             cccCCCCcCCCCCCHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHCCCCEEEEc
Confidence            1   11   011  1334445443  577776  4889999999999999999885

>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A

Probab=96.04  E-value=0.48  Score=42.95  Aligned_cols=173  Identities=17%  Similarity=0.115  Sum_probs=92.7

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccch-hhhcCCC---CCCCC---hHHHHHHHhhcCcceEeecc--ccc----hHHH
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPAD-IRAQGGV---ARMSD---PQLIKQIKSSVTIPVMAKAR--IGH----FVEA  107 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d-~r~~~G~---~~~~~---~~~i~~i~~~~~lPv~~kd~--i~~----~~~~  107 (310)
                      .+.|+-.|+.++++|+++|-.-    .+ .-...|.   ....-   ...++.|++.+++||++..-  .+.    ...+
T Consensus        25 ~a~D~~sA~~~~~aG~~ai~vs----g~~~a~~lG~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~v~~~v  100 (295)
T 1s2w_A           25 EAHNGLSARIVQEAGFKGIWGS----GLSVSAQLGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFNNARRLV  100 (295)
T ss_dssp             EECSHHHHHHHHHHTCSCEEEC----CHHHHHTC---------CHHHHHHHHHHHHTCSSCEEEECCSSCSSHHHHHHHH
T ss_pred             cCCCHHHHHHHHHcCCCEEEeC----hHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEecCCCCCCCHHHHHHHH
Confidence            4567888999999999987221    00 1111111   00111   23456777788999887532  232    2345


Q ss_pred             HHHHHcCCCeeeecCC----------------CChhHHHHHHHh---c--CCCCcEEeecCCH------HH----HHHHH
Q 037779          108 QILEAIGVDYVDESEV----------------LTPADEENHINK---H--NFRVPFVCGCRNL------GE----SLRRI  156 (310)
Q Consensus       108 ~~~~~aGad~v~~~~~----------------~~~~~~~~~~~~---~--~~~l~v~~~v~t~------~e----a~~a~  156 (310)
                      ..+.++||.+|++-+.                .+..+....++.   .  ..+..+..-+...      ++    ++...
T Consensus       101 ~~l~~aGaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~Ra~ay~  180 (295)
T 1s2w_A          101 RKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWGLDEALKRAEAYR  180 (295)
T ss_dssp             HHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHcCCcEEEECCCCCCccccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHHhccccHHHHHHHHHHHH
Confidence            6677899999983222                122233333322   1  2234444433222      32    23334


Q ss_pred             HhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCC--CCEEEEc-cCCCC
Q 037779          157 REGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGR--LPVVHFA-AGGVA  233 (310)
Q Consensus       157 ~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~--iPVv~ia-~GGI~  233 (310)
                      ++|||.|.+.+.                                      ..+.+.++.+.+..+  +|+++.. ++|-.
T Consensus       181 eAGAd~i~~e~~--------------------------------------~~~~~~~~~i~~~~~~~~P~i~~~~~~~~~  222 (295)
T 1s2w_A          181 NAGADAILMHSK--------------------------------------KADPSDIEAFMKAWNNQGPVVIVPTKYYKT  222 (295)
T ss_dssp             HTTCSEEEECCC--------------------------------------SSSSHHHHHHHHHHTTCSCEEECCSTTTTS
T ss_pred             HcCCCEEEEcCC--------------------------------------CCCHHHHHHHHHHcCCCCCEEEeCCCCCCC
Confidence            567777666410                                      011334444444433  8985321 13322


Q ss_pred             CHHHHHHHHHcCCCEEEEccccccC
Q 037779          234 TPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       234 t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                         .+.++.++|+.-|..|...+++
T Consensus       223 ---~~~eL~~lGv~~v~~~~~~~ra  244 (295)
T 1s2w_A          223 ---PTDHFRDMGVSMVIWANHNLRA  244 (295)
T ss_dssp             ---CHHHHHHHTCCEEEECSHHHHH
T ss_pred             ---CHHHHHHcCCcEEEEChHHHHH
Confidence               3788999999999999998874

>4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A*

Probab=96.03  E-value=0.043  Score=49.69  Aligned_cols=21  Identities=24%  Similarity=0.352  Sum_probs=17.4

Q ss_pred             CCCEEEEcc-CCCCCHHHHHHHHH
Q 037779          221 RLPVVHFAA-GGVATPADAAMMMQ  243 (310)
Q Consensus       221 ~iPVv~ia~-GGI~t~~di~~~~~  243 (310)
                      ++.|-  ++ |||.|.+++.++++
T Consensus       231 ~vgvK--As~GGIrt~e~A~~~i~  252 (297)
T 4eiv_A          231 CIGIK--IEVGDVHMAETADFLMQ  252 (297)
T ss_dssp             CCEEE--EECTTCCHHHHHHHHHH
T ss_pred             ceeEE--ecCCCCCCHHHHHHHHH
Confidence            45664  57 99999999999998

>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A

Probab=95.98  E-value=0.037  Score=49.71  Aligned_cols=145  Identities=14%  Similarity=0.163  Sum_probs=90.4

Q ss_pred             ecceEEEEeccCCCccccccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHh
Q 037779           10 YGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS   89 (310)
Q Consensus        10 ~~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~   89 (310)
                      .++..|-|++.+-    ..|+..+-|.|+      ...|+.+++.|+|.| +-    ++.        +...+.+..|.+
T Consensus        55 ~dp~~I~~I~~aV----sIPVm~k~righ------~~EAqilea~GaD~I-De----sev--------ltpad~~~~I~k  111 (291)
T 3o07_A           55 SDPKMIKDIMNSV----SIPVMAKVRIGH------FVEAQIIEALEVDYI-DE----SEV--------LTPADWTHHIEK  111 (291)
T ss_dssp             CCHHHHHHHHTTC----SSCEEEEEETTC------HHHHHHHHHTTCSEE-EE----ETT--------SCCSCSSCCCCG
T ss_pred             CCHHHHHHHHHhC----CCCeEEEEecCc------HHHHHHHHHcCCCEE-ec----ccC--------CCHHHHHHHhhh
Confidence            3445555655432    356777777755      788999999999988 43    222        112334444444


Q ss_pred             -hcCcceEeeccccchHHHHHHHHcCCCeeeec-C------------------------CC--------------ChhHH
Q 037779           90 -SVTIPVMAKARIGHFVEAQILEAIGVDYVDES-E------------------------VL--------------TPADE  129 (310)
Q Consensus        90 -~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~------------------------~~--------------~~~~~  129 (310)
                       ..++|+++...  +..++....+.||+.|-.. .                        .+              .+.++
T Consensus       112 ~~f~vpfv~~~~--~l~EAlrri~eGA~mIrTtge~gtg~v~~av~h~r~~~~~i~~l~g~~t~~el~~~a~~~~ad~el  189 (291)
T 3o07_A          112 DKFKVPFVCGAK--DLGEALRRINEGAAMIRTKGEAGTGDVSEAVKHIRRITEEIKACQQLKSEDDIAKVAEEMRVPVSL  189 (291)
T ss_dssp             GGCSSCEEEEES--SHHHHHHHHHHTCSEEEECCCTTSCCTHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHTSCHHH
T ss_pred             hcCCCcEEeeCC--CHHHHHHHHHCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHcCCCHHHhhhcccccCCCHHH
Confidence             35789987644  3467778888999998632 0                        11              22345


Q ss_pred             HHHHHhcCCCCcEE----eecCCHHHHHHHHHhCCCEEEEecC-CCCCchHHHHHH
Q 037779          130 ENHINKHNFRVPFV----CGCRNLGESLRRIREGAAMIRTKGE-AGTGNIVEAVRH  180 (310)
Q Consensus       130 ~~~~~~~~~~l~v~----~~v~t~~ea~~a~~~Gad~I~v~g~-~~~~~~~~~~~~  180 (310)
                      ++.+++. ..++++    -++.|++++..+.+.|+|.|.+... ...+++....++
T Consensus       190 I~~Ike~-~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Aka  244 (291)
T 3o07_A          190 LKDVLEK-GKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATA  244 (291)
T ss_dssp             HHHHHHH-TSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHH
T ss_pred             HHHHHHc-cCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHH
Confidence            5555543 456653    2588999999999999999988633 333444444433

>1yya_A Triosephosphate isomerase; riken structural genomics/proteom initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus}

Probab=95.97  E-value=0.058  Score=47.87  Aligned_cols=41  Identities=22%  Similarity=0.412  Sum_probs=33.8

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccCCCHHHH
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSGDPVRR  264 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~~dp~~~  264 (310)
                      .++|  +..|+++ ++|+.++++. ++||++||++-.+++++...
T Consensus       204 ~vrI--lYGGSV~-~~N~~~l~~~~diDG~LVGgAsL~a~~F~~i  245 (250)
T 1yya_A          204 RVRI--LYGGSVN-PKNFADLLSMPNVDGGLVGGASLELESFLAL  245 (250)
T ss_dssp             TCEE--EEESSCC-TTTHHHHHTSTTCCEEEESGGGSSHHHHHHH
T ss_pred             ceeE--EEcCCCC-HHHHHHHHcCCCCCeeEeeHHHhChHHHHHH
Confidence            5777  6799995 8999999987 99999999999986554443

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=95.90  E-value=0.07  Score=50.01  Aligned_cols=86  Identities=17%  Similarity=0.194  Sum_probs=63.8

Q ss_pred             ChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeecC--------CCChhHHHHHHHh-cCCCCcEEe--ecCC
Q 037779           80 DPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESE--------VLTPADEENHINK-HNFRVPFVC--GCRN  148 (310)
Q Consensus        80 ~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~--------~~~~~~~~~~~~~-~~~~l~v~~--~v~t  148 (310)
                      +.+.++.+++.+++|+++|... +.+.++.+.++|+|+|..+.        ..+..+.+..+.+ ...++++++  ++++
T Consensus       213 ~~~~i~~l~~~~~~pv~vK~~~-~~e~a~~a~~~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~~  291 (370)
T 1gox_A          213 SWKDVAWLQTITSLPILVKGVI-TAEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRR  291 (370)
T ss_dssp             CHHHHHHHHHHCCSCEEEECCC-SHHHHHHHHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCS
T ss_pred             hHHHHHHHHHHhCCCEEEEecC-CHHHHHHHHHcCCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence            3678999999999999998654 34788899999999987421        0122234444444 222577777  4999


Q ss_pred             HHHHHHHHHhCCCEEEEe
Q 037779          149 LGESLRRIREGAAMIRTK  166 (310)
Q Consensus       149 ~~ea~~a~~~Gad~I~v~  166 (310)
                      .+++.+++.+|||.|.+.
T Consensus       292 ~~D~~k~l~~GAdaV~iG  309 (370)
T 1gox_A          292 GTDVFKALALGAAGVFIG  309 (370)
T ss_dssp             HHHHHHHHHHTCSEEEEC
T ss_pred             HHHHHHHHHcCCCEEeec
Confidence            999999999999999985

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=95.90  E-value=0.052  Score=52.63  Aligned_cols=113  Identities=19%  Similarity=0.237  Sum_probs=75.1

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeeecC-
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDESE-  122 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~-  122 (310)
                      .+.++.+.++|++.+. +.   +    ..|.. ....+.++.+++.+ ++|++.+ .+.+.+.+..+.++|||.|.... 
T Consensus       235 ~~~a~~l~~~G~d~iv-i~---~----a~g~~-~~~~~~i~~l~~~~p~~pvi~G-~v~t~~~a~~~~~~Gad~I~vg~g  304 (491)
T 1zfj_A          235 FERAEALFEAGADAIV-ID---T----AHGHS-AGVLRKIAEIRAHFPNRTLIAG-NIATAEGARALYDAGVDVVKVGIG  304 (491)
T ss_dssp             HHHHHHHHHHTCSEEE-EC---C----SCTTC-HHHHHHHHHHHHHCSSSCEEEE-EECSHHHHHHHHHTTCSEEEECSS
T ss_pred             HHHHHHHHHcCCCeEE-Ee---e----ecCcc-hhHHHHHHHHHHHCCCCcEeCC-CccCHHHHHHHHHcCCCEEEECcc
Confidence            4789999999999983 31   1    11110 11256788888887 8999854 33445677888999999985321 


Q ss_pred             -------------CCChhHHHHHHHh--cCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEec
Q 037779          123 -------------VLTPADEENHINK--HNFRVPFVC--GCRNLGESLRRIREGAAMIRTKG  167 (310)
Q Consensus       123 -------------~~~~~~~~~~~~~--~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~g  167 (310)
                                   ..+.......+..  ...++++++  ++++..++.+++.+||+.+.+..
T Consensus       305 ~g~~~~tr~~~~~~~p~~~~l~~~~~~~~~~~ipvia~GGi~~~~di~kal~~GA~~v~vG~  366 (491)
T 1zfj_A          305 PGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGS  366 (491)
T ss_dssp             CCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEEST
T ss_pred             CCcceEEeeecCCCCCcHHHHHHHHHHHhhcCCCEEeeCCCCCHHHHHHHHHcCCcceeeCH
Confidence                         1112222222222  124678888  59999999999999999999853

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=95.89  E-value=0.075  Score=52.03  Aligned_cols=112  Identities=13%  Similarity=0.204  Sum_probs=75.1

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeeec--
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDES--  121 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~~--  121 (310)
                      .+.++.+.++|++.+ .++   +......+     ..+.++++++.. ++|+++++. .+.+.++.+.++|||+|...  
T Consensus       258 ~era~aLveaGvd~I-~Id---~a~g~~~~-----v~~~i~~i~~~~~~~~vi~g~v-~t~e~a~~~~~aGad~i~vg~g  327 (511)
T 3usb_A          258 MTRIDALVKASVDAI-VLD---TAHGHSQG-----VIDKVKEVRAKYPSLNIIAGNV-ATAEATKALIEAGANVVKVGIG  327 (511)
T ss_dssp             HHHHHHHHHTTCSEE-EEE---CSCTTSHH-----HHHHHHHHHHHCTTSEEEEEEE-CSHHHHHHHHHHTCSEEEECSS
T ss_pred             HHHHHHHHhhccceE-Eec---ccccchhh-----hhhHHHHHHHhCCCceEEeeee-ccHHHHHHHHHhCCCEEEECCC
Confidence            577999999999998 341   10000111     156788888876 588887653 35578889999999998621  


Q ss_pred             --C--------C--CChhHHHHHHHh--cCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779          122 --E--------V--LTPADEENHINK--HNFRVPFVC--GCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       122 --~--------~--~~~~~~~~~~~~--~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                        .        .  .+....+..+.+  ...++++++  ++.+..++.+++.+||+.+.+.
T Consensus       328 ~gsi~~~~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vG  388 (511)
T 3usb_A          328 PGSICTTRVVAGVGVPQLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG  388 (511)
T ss_dssp             CSTTCCHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred             CccccccccccCCCCCcHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheec
Confidence              0        1  122222223222  234688888  5999999999999999999885

>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor}

Probab=95.89  E-value=0.026  Score=50.34  Aligned_cols=41  Identities=22%  Similarity=0.242  Sum_probs=32.9

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHH
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVRR  264 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~dp~~~  264 (310)
                      .++|  +..|+| +++++.+++. .++||++||++-.+++++...
T Consensus       202 ~vrI--lYGGSV-~~~N~~~l~~~~diDG~LVGgAsL~a~~F~~I  243 (259)
T 2i9e_A          202 SIRI--QYGGSV-TAANCKELASQPDIDGFLVGGASLKPEFVDII  243 (259)
T ss_dssp             HCEE--EECSCC-CTTTHHHHHTSTTCCEEEESGGGGSTHHHHHH
T ss_pred             cccE--EEcCCC-CHhhHHHHhcCCCCCeeeechHhhChHHHHHH
Confidence            3677  679999 5899988885 699999999999997655443

>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis}

Probab=95.85  E-value=0.41  Score=41.31  Aligned_cols=176  Identities=16%  Similarity=0.134  Sum_probs=104.6

Q ss_pred             cCCCHHHHHHHHHcCC-cEEEecccccchhhhcC-CCCCCCChHHHHHHHhhcCcceEeeccccc----hHHHHHHHHcC
Q 037779           41 DVVTPEQARIAEEAGA-CAVMALERVPADIRAQG-GVARMSDPQLIKQIKSSVTIPVMAKARIGH----FVEAQILEAIG  114 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga-~~I~~l~~~~~d~r~~~-G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~----~~~~~~~~~aG  114 (310)
                      +..+.+..+.+.+.|. +++. =|  |+=. .+. |.   .-.+.+++|++.++-||.....-.+    ..++..+.+.+
T Consensus         6 DtAn~~ei~~~~~~g~i~GVT-TN--Psli-~k~~g~---~~~~~~~eI~~~v~G~Vs~EV~a~d~e~mi~ea~~l~~~~   78 (212)
T 3r8r_A            6 DTANIDEIREANELGILAGVT-TN--PSLV-AKEANV---SFHDRLREITDVVKGSVSAEVISLKAEEMIEEGKELAKIA   78 (212)
T ss_dssp             ECCCHHHHHHHHHTTCEEEEE-CC--HHHH-HTSCSS---CHHHHHHHHHHHCCSCEEEECCCSSHHHHHHHHHHHHTTC
T ss_pred             ecCCHHHHHHHHhcCCccccc-CC--HHHH-HHccCC---CHHHHHHHHHHhcCCCEEEEEecCCHHHHHHHHHHHHHhC
Confidence            4567788888888886 6762 22  2323 233 32   1257788999888778876543222    24566677776


Q ss_pred             CCeee-ecCCCChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHHHHHhhcceecc
Q 037779          115 VDYVD-ESEVLTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRHVRSVMGDIRVL  191 (310)
Q Consensus       115 ad~v~-~~~~~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~l  191 (310)
                      -..++ ++....--...+.+.++|  +.+-+. +-++.++..|.++||+||.+. |+..                     
T Consensus        79 ~nv~IKIP~T~eGl~A~~~L~~~G--I~vn~TlifS~~Qa~~Aa~AGa~yISPfvgRi~---------------------  135 (212)
T 3r8r_A           79 PNITVKIPMTSDGLKAVRALTDLG--IKTNVTLIFNANQALLAARAGATYVSPFLGRLD---------------------  135 (212)
T ss_dssp             TTEEEEEESSHHHHHHHHHHHHTT--CCEEEEEECSHHHHHHHHHHTCSEEEEBHHHHH---------------------
T ss_pred             CCEEEEeCCCHHHHHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHcCCeEEEeccchhh---------------------
Confidence            55544 544322224455555544  444333 678999999999999999875 4311                     


Q ss_pred             cccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          192 RNMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       192 ~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                       ....|++       ..-.++....+... +.-|  + ...+.++.++.++..+|||.+-+.-.+++
T Consensus       136 -d~~~dG~-------~~v~~i~~~~~~~~~~t~i--l-aAS~R~~~~v~~~a~~G~d~~Tip~~vl~  191 (212)
T 3r8r_A          136 -DIGHNGL-------DLISEVKQIFDIHGLDTQI--I-AASIRHPQHVTEAALRGAHIGTMPLKVIH  191 (212)
T ss_dssp             -HTTSCHH-------HHHHHHHHHHHHHTCCCEE--E-EBSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred             -hcCCChH-------HHHHHHHHHHHHcCCCCEE--E-EecCCCHHHHHHHHHcCCCEEEcCHHHHH
Confidence             0011111       00122222233322 2233  3 46788999999999999999999887665

>1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A

Probab=95.79  E-value=0.051  Score=48.39  Aligned_cols=42  Identities=24%  Similarity=0.375  Sum_probs=34.5

Q ss_pred             CCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccCCCHHHHHH
Q 037779          222 LPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       222 iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~~dp~~~~~  266 (310)
                      ++|  +..|+++ ++|+.++++. ++||++||++-.+++++...++
T Consensus       207 vrI--lYGGSV~-~~N~~~l~~~~diDG~LVGgAsL~a~~F~~Ii~  249 (256)
T 1aw2_A          207 VVI--QYGGSVK-PENAAAYFAQPDIDGALVGGAALDAKSFAAIAK  249 (256)
T ss_dssp             CEE--EECSCCC-TTTHHHHTTSTTCCEEEESGGGGCHHHHHHHHH
T ss_pred             ccE--EEcCCCC-HHHHHHHHcCCCCCeeeecHHHhChHHHHHHHH
Confidence            677  6799995 8999999987 9999999999999666554444

>3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A*

Probab=95.72  E-value=0.57  Score=40.70  Aligned_cols=193  Identities=16%  Similarity=0.175  Sum_probs=113.8

Q ss_pred             cCCCHHHHHHHHHcCC-cEEEecccccchhhhcC---CCCCCCChHHHHHHHhhcCcceEeecccc----chHHHHHHHH
Q 037779           41 DVVTPEQARIAEEAGA-CAVMALERVPADIRAQG---GVARMSDPQLIKQIKSSVTIPVMAKARIG----HFVEAQILEA  112 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga-~~I~~l~~~~~d~r~~~---G~~~~~~~~~i~~i~~~~~lPv~~kd~i~----~~~~~~~~~~  112 (310)
                      +..+.+..+.+.+.|. +++. =|  |+=.+ +.   |.   .-.+.+++|++.++-||.....-.    ...+++.+.+
T Consensus         6 DtAn~~ei~~~~~~g~i~GVT-TN--Psli~-k~~~~g~---~~~~~~~ei~~~v~G~Vs~EV~a~d~e~mi~eA~~L~~   78 (223)
T 3s1x_A            6 DTANIDEIRTGVNWGIVDGVT-TN--PTLIS-KEAVNGK---KYGDIIREILKIVDGPVSVEVVSTKYEGMVEEARKIHG   78 (223)
T ss_dssp             ECCCHHHHHHHHHHTCCCEEE-CC--HHHHH-HHSCTTC---CHHHHHHHHHHHCSSCEEEECCCCSHHHHHHHHHHHHH
T ss_pred             ecCCHHHHHHHHhcCCccccc-CC--HHHHH-hhhccCC---CHHHHHHHHHHhCCCCEEEEEccCCHHHHHHHHHHHHH
Confidence            4557788888888885 7762 22  22221 22   21   125678889888877887753322    2356677777


Q ss_pred             cCCCeee-ecCCCChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHHHHHhhccee
Q 037779          113 IGVDYVD-ESEVLTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRHVRSVMGDIR  189 (310)
Q Consensus       113 aGad~v~-~~~~~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~~~~  189 (310)
                      .+-..++ ++....--...+.+.+++  +.+-+. +-++.++..|.++||+||.+. |+..                   
T Consensus        79 ~~~nv~IKIP~T~eGl~A~~~L~~~G--I~vn~TlifS~~QA~~Aa~AGa~yISPfvgRi~-------------------  137 (223)
T 3s1x_A           79 LGDNAVVKIPMTEDGLRAIKTLSSEH--INTNCTLVFNPIQALLAAKAGVTYVSPFVGRLD-------------------  137 (223)
T ss_dssp             TCTTEEEEEESSHHHHHHHHHHHHTT--CCEEEEEECSHHHHHHHHHTTCSEEEEBSHHHH-------------------
T ss_pred             hCCCEEEEeCCCHHHHHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHcCCeEEEeecchHh-------------------
Confidence            7755544 544322224455555544  444333 678999999999999999875 4311                   


Q ss_pred             cccccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC--CCHH--HH
Q 037779          190 VLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS--GDPV--RR  264 (310)
Q Consensus       190 ~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~--~dp~--~~  264 (310)
                         ....|++       ..-.++....+... +..|  + ...+.++.++.++..+|||.+-+.-.+++.  .+|.  ..
T Consensus       138 ---d~g~dG~-------~~v~~i~~~~~~~~~~T~I--l-aAS~Rn~~~v~~aa~~G~d~~Tip~~vl~~l~~hpltd~~  204 (223)
T 3s1x_A          138 ---DIGEDGM-------QIIDMIRTIFNNYIIKTQI--L-VASIRNPIHVLRSAVIGADVVTVPFNVLKSLMKHPKTDEG  204 (223)
T ss_dssp             ---HTTSCTH-------HHHHHHHHHHHHTTCCSEE--E-EBSCCSHHHHHHHHHHTCSEEEECHHHHHHTTCCHHHHHH
T ss_pred             ---hcCCCHH-------HHHHHHHHHHHHcCCCCEE--E-EEeCCCHHHHHHHHHcCCCEEEeCHHHHHHHHcCCcHHHH
Confidence               0011111       00122222233322 2234  3 466889999999999999999999877753  2443  45


Q ss_pred             HHHHHHHHHc
Q 037779          265 ARAIVQAVTN  274 (310)
Q Consensus       265 ~~~~~~~~~~  274 (310)
                      ++.|.+-+++
T Consensus       205 ~~~F~~Dw~~  214 (223)
T 3s1x_A          205 LAKFLEDWKK  214 (223)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6677766654

>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*

Probab=95.68  E-value=0.012  Score=53.04  Aligned_cols=82  Identities=12%  Similarity=0.168  Sum_probs=58.0

Q ss_pred             CCHHHH--HHHHHcCCc---EEEecccccchhhhcCCCCCCCChHHHHHHHhhc--CcceEeeccccchHHHHHHHHcCC
Q 037779           43 VTPEQA--RIAEEAGAC---AVMALERVPADIRAQGGVARMSDPQLIKQIKSSV--TIPVMAKARIGHFVEAQILEAIGV  115 (310)
Q Consensus        43 ~~~~~a--~~~~~~Ga~---~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~--~lPv~~kd~i~~~~~~~~~~~aGa  115 (310)
                      .+++.+  .+|..+|++   .+.+|     |...     +..+.+.++++++.+  ++|+++..+|.+.++++.+.++||
T Consensus       181 ~~~e~A~~~aYa~~gad~G~~lV~L-----D~~~-----~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGA  250 (286)
T 3vk5_A          181 STASTEEIDRYLHVARAFGFHMVYL-----YSRN-----EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGA  250 (286)
T ss_dssp             CCSSSHHHHHHHHHHHHTTCSEEEE-----ECSS-----SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHHcCCCEEEE-----cCCC-----CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCC
Confidence            345555  666666554   34466     3321     355689999999999  899999999988889999999999


Q ss_pred             Ceee-ecCCCCh--hHHHHHHH
Q 037779          116 DYVD-ESEVLTP--ADEENHIN  134 (310)
Q Consensus       116 d~v~-~~~~~~~--~~~~~~~~  134 (310)
                      |.|. .+.....  +++++.+.
T Consensus       251 D~VVVGSAav~d~~Pelv~e~a  272 (286)
T 3vk5_A          251 DYVGFAGALEQPDWRSALAEIA  272 (286)
T ss_dssp             SEEEESGGGSSTTHHHHHHHHH
T ss_pred             CEEEECchhhcCCCHHHHHHHH
Confidence            9998 5544444  45554443

>3qw4_B UMP synthase; N-terminal orotidine monophosphate decarboxylase domain C-TE orotate phosphoribosyltransferase domain, transferase, LYAS; HET: U5P; 3.00A {Leishmania donovani}

Probab=95.67  E-value=0.26  Score=47.41  Aligned_cols=79  Identities=14%  Similarity=0.193  Sum_probs=51.1

Q ss_pred             HHHHHhc-CCCCEEEEccCCCCC-HHHHHHHHHcCCCE------EEEccccccCCCHHHHHHHHHHHHHcCCC----hhh
Q 037779          213 VMQTKQL-GRLPVVHFAAGGVAT-PADAAMMMQLGCDG------VFVGSGVFKSGDPVRRARAIVQAVTNYSD----PDV  280 (310)
Q Consensus       213 ~~~i~~~-~~iPVv~ia~GGI~t-~~di~~~~~~Gadg------V~VGsai~~~~dp~~~~~~~~~~~~~~~~----~~~  280 (310)
                      ++.+++. .+.+++ +  =||+. ..+..++++.|+|.      ++||+.|++++||.+.++++.+.++..+.    ...
T Consensus       185 ~~~ir~~~~~~~~l-~--PGig~qg~tp~~a~~~g~d~~~~~~livvgR~I~~A~dp~~aa~~i~~~i~~~r~~~~~~~~  261 (453)
T 3qw4_B          185 LARVRARAPTLWFL-V--PGIGAQGGSLKASLDAGLRADGSGMLINVSRGLARAADPRAAAKELCEEINAIRFAKGASVE  261 (453)
T ss_dssp             HHHHHHHCSSCCEE-E--CCSSTTCCCHHHHHHHHCCTTSCCEEEEESHHHHSCSCHHHHHHHHHHHHHHHHSCCSCCHH
T ss_pred             HHHHHHhCCCCeEE-E--CCcCCCCCCHHHHHHhcCCcccCCceEecChhhccCCCHHHHHHHHHHHHHHHHhcccHHHH
Confidence            3455543 344553 3  33321 23566777788887      99999999999999999998888876432    344


Q ss_pred             HHhhhhccCCceec
Q 037779          281 LAEVSCGLGEAMVG  294 (310)
Q Consensus       281 ~~~~~~~~~~~~~~  294 (310)
                      +.++....|....|
T Consensus       262 ~~~~l~~~~a~~~g  275 (453)
T 3qw4_B          262 LAKALVDSHCVRFG  275 (453)
T ss_dssp             HHHHHHHTTSEEES
T ss_pred             HHHHHHHCCCCEEC
Confidence            44454444554444

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=95.65  E-value=0.17  Score=43.36  Aligned_cols=120  Identities=18%  Similarity=0.212  Sum_probs=73.9

Q ss_pred             HHHHhhcCcceEeeccccc-hHHHHHHHHcCCCeeeecC-CCChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCC
Q 037779           85 KQIKSSVTIPVMAKARIGH-FVEAQILEAIGVDYVDESE-VLTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAA  161 (310)
Q Consensus        85 ~~i~~~~~lPv~~kd~i~~-~~~~~~~~~aGad~v~~~~-~~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad  161 (310)
                      ..+++.-=+|++....... .+.++.+.+.|++.+-... ..+..+.++.+++  .++.+.++ +-+.+++..+.+.|+|
T Consensus         8 ~~l~~~~ii~vi~~~~~~~~~~~~~~l~~gGv~~iel~~k~~~~~~~i~~~~~--~~~~~gag~vl~~d~~~~A~~~GAd   85 (207)
T 2yw3_A            8 AVLAESRLLPLLTVRGGEDLLGLARVLEEEGVGALEITLRTEKGLEALKALRK--SGLLLGAGTVRSPKEAEAALEAGAA   85 (207)
T ss_dssp             HHHHHHCEEEEECCCSCCCHHHHHHHHHHTTCCEEEEECSSTHHHHHHHHHTT--SSCEEEEESCCSHHHHHHHHHHTCS
T ss_pred             HHHHhCCEEEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHhC--CCCEEEeCeEeeHHHHHHHHHcCCC
Confidence            3344333355554433332 2456778889999986432 1223345555544  55666665 4467889999999999


Q ss_pred             EEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHH
Q 037779          162 MIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMM  241 (310)
Q Consensus       162 ~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~  241 (310)
                      ++... . .                                      +.+..+..++ ..+|++ +   |++|++++.++
T Consensus        86 ~v~~~-~-~--------------------------------------d~~v~~~~~~-~g~~~i-~---G~~t~~e~~~A  120 (207)
T 2yw3_A           86 FLVSP-G-L--------------------------------------LEEVAALAQA-RGVPYL-P---GVLTPTEVERA  120 (207)
T ss_dssp             EEEES-S-C--------------------------------------CHHHHHHHHH-HTCCEE-E---EECSHHHHHHH
T ss_pred             EEEcC-C-C--------------------------------------CHHHHHHHHH-hCCCEE-e---cCCCHHHHHHH
Confidence            98542 1 1                                      1223333333 246774 2   48899999999


Q ss_pred             HHcCCCEEEE
Q 037779          242 MQLGCDGVFV  251 (310)
Q Consensus       242 ~~~GadgV~V  251 (310)
                      .+.|+|.|.+
T Consensus       121 ~~~Gad~v~~  130 (207)
T 2yw3_A          121 LALGLSALKF  130 (207)
T ss_dssp             HHTTCCEEEE
T ss_pred             HHCCCCEEEE
Confidence            9999999988

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=95.49  E-value=0.046  Score=47.94  Aligned_cols=88  Identities=15%  Similarity=0.077  Sum_probs=61.2

Q ss_pred             ccCCCHHHHHHHHHcCCcEEEe-cccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779           40 MDVVTPEQARIAEEAGACAVMA-LERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYV  118 (310)
Q Consensus        40 ~~~~~~~~a~~~~~~Ga~~I~~-l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v  118 (310)
                      .++.+.+.++.+.+.|++.|.. +....+..+     ....+++.++++++. ++|++....+.+.+.+..+.++|||.|
T Consensus       134 ~~v~t~eea~~a~~~Gad~Ig~~~~g~t~~~~-----~~~~~~~~i~~l~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV  207 (232)
T 3igs_A          134 ADCSSVDDGLACQRLGADIIGTTMSGYTTPDT-----PEEPDLPLVKALHDA-GCRVIAEGRYNSPALAAEAIRYGAWAV  207 (232)
T ss_dssp             EECCSHHHHHHHHHTTCSEEECTTTTSSSSSC-----CSSCCHHHHHHHHHT-TCCEEEESCCCSHHHHHHHHHTTCSEE
T ss_pred             EeCCCHHHHHHHHhCCCCEEEEcCccCCCCCC-----CCCCCHHHHHHHHhc-CCcEEEECCCCCHHHHHHHHHcCCCEE
Confidence            4566789999999999999832 111111111     113458899999988 999999999977788888899999999


Q ss_pred             e-ecCCCChhHHHHHH
Q 037779          119 D-ESEVLTPADEENHI  133 (310)
Q Consensus       119 ~-~~~~~~~~~~~~~~  133 (310)
                      . ++....|.+..+.+
T Consensus       208 ~VGsal~~p~~~~~~~  223 (232)
T 3igs_A          208 TVGSAITRLEHICGWY  223 (232)
T ss_dssp             EECHHHHCHHHHHHHH
T ss_pred             EEehHhcCHHHHHHHH
Confidence            8 44444455444433

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=95.45  E-value=0.073  Score=47.83  Aligned_cols=80  Identities=11%  Similarity=0.149  Sum_probs=55.0

Q ss_pred             HHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcC--------CChhhH
Q 037779          210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY--------SDPDVL  281 (310)
Q Consensus       210 ~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~--------~~~~~~  281 (310)
                      .+.++.+++..++||+.  -+.|-++.++.++.++|||+|+++.+.+.    ...++++.+..+.+        +++.-+
T Consensus       102 ~~~l~~ir~~v~lPvl~--kdfiid~~qv~~A~~~GAD~VlLi~a~l~----~~~l~~l~~~a~~lGl~~lvev~t~ee~  175 (272)
T 3qja_A          102 LDDLDAVRASVSIPVLR--KDFVVQPYQIHEARAHGADMLLLIVAALE----QSVLVSMLDRTESLGMTALVEVHTEQEA  175 (272)
T ss_dssp             HHHHHHHHHHCSSCEEE--ESCCCSHHHHHHHHHTTCSEEEEEGGGSC----HHHHHHHHHHHHHTTCEEEEEESSHHHH
T ss_pred             HHHHHHHHHhCCCCEEE--CccccCHHHHHHHHHcCCCEEEEecccCC----HHHHHHHHHHHHHCCCcEEEEcCCHHHH
Confidence            45667777767899963  45555788999999999999999988775    23355666655543        233333


Q ss_pred             HhhhhccCCceeccc
Q 037779          282 AEVSCGLGEAMVGID  296 (310)
Q Consensus       282 ~~~~~~~~~~~~~~~  296 (310)
                      . .+...|.++.|+.
T Consensus       176 ~-~A~~~Gad~IGv~  189 (272)
T 3qja_A          176 D-RALKAGAKVIGVN  189 (272)
T ss_dssp             H-HHHHHTCSEEEEE
T ss_pred             H-HHHHCCCCEEEEC
Confidence            2 3345688888876

>1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A {Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A

Probab=95.43  E-value=0.12  Score=46.04  Aligned_cols=43  Identities=21%  Similarity=0.326  Sum_probs=35.1

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHHH
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~dp~~~~~  266 (310)
                      .++|  +..|++ +++|+.++++ .++||++||++-.+++++...++
T Consensus       204 ~vrI--lYGGSV-~~~N~~~l~~~~diDG~LVGgAsL~a~~F~~Ii~  247 (255)
T 1tre_A          204 QVII--QYGGSV-NASNAAELFAQPDIDGALVGGASLKADAFAVIVK  247 (255)
T ss_dssp             HCEE--EECSCC-CTTTHHHHHTSTTCCEEEESGGGGCHHHHHHHHH
T ss_pred             cccE--EEcCCC-CHHHHHHHHcCCCCCeeEecHHHhChHHHHHHHH
Confidence            3677  679999 5889999997 69999999999999766555544

>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*

Probab=95.41  E-value=0.078  Score=48.82  Aligned_cols=85  Identities=16%  Similarity=0.167  Sum_probs=60.5

Q ss_pred             hHHHHHHHhhcCcceEeecc-c-cchHHHHHHHHcCCCeeeec--CC--------------------C----ChhHHHHH
Q 037779           81 PQLIKQIKSSVTIPVMAKAR-I-GHFVEAQILEAIGVDYVDES--EV--------------------L----TPADEENH  132 (310)
Q Consensus        81 ~~~i~~i~~~~~lPv~~kd~-i-~~~~~~~~~~~aGad~v~~~--~~--------------------~----~~~~~~~~  132 (310)
                      .+.++.+++ +++||++|.. . .+.+.++.+.++|+|+|..+  -.                    .    +..+.+..
T Consensus       171 ~~~i~~vr~-~~~Pv~vK~v~~g~~~e~a~~~~~~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~  249 (332)
T 1vcf_A          171 VERLAELLP-LPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILE  249 (332)
T ss_dssp             HHHHHHHCS-CSSCEEEECSSSCCCHHHHHHHTTSCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHH
T ss_pred             HHHHHHHHc-CCCCEEEEecCCCCCHHHHHHHHHcCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHH
Confidence            578899999 9999999942 1 24567888899999999732  11                    0    11123334


Q ss_pred             HHhcCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779          133 INKHNFRVPFVC--GCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       133 ~~~~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                      +.+.-.++++++  ++++.+++.+++.+|||.|.+.
T Consensus       250 v~~~~~~ipvia~GGI~~~~d~~kal~~GAd~V~ig  285 (332)
T 1vcf_A          250 VREVLPHLPLVASGGVYTGTDGAKALALGADLLAVA  285 (332)
T ss_dssp             HHHHCSSSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred             HHHhcCCCeEEEECCCCCHHHHHHHHHhCCChHhhh
Confidence            433212577777  5999999999999999999985

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=95.36  E-value=0.052  Score=47.50  Aligned_cols=88  Identities=16%  Similarity=0.075  Sum_probs=61.2

Q ss_pred             ccCCCHHHHHHHHHcCCcEEEe-cccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779           40 MDVVTPEQARIAEEAGACAVMA-LERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYV  118 (310)
Q Consensus        40 ~~~~~~~~a~~~~~~Ga~~I~~-l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v  118 (310)
                      .++.+.+.++.+.+.|++.|.. +....+..+     ....+++.++++++. ++|++....+.+.+.+..+.++|||.|
T Consensus       134 ~~v~t~eea~~a~~~Gad~Ig~~~~g~t~~~~-----~~~~~~~li~~l~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV  207 (229)
T 3q58_A          134 ADCSTVNEGISCHQKGIEFIGTTLSGYTGPIT-----PVEPDLAMVTQLSHA-GCRVIAEGRYNTPALAANAIEHGAWAV  207 (229)
T ss_dssp             EECSSHHHHHHHHHTTCSEEECTTTTSSSSCC-----CSSCCHHHHHHHHTT-TCCEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred             EecCCHHHHHHHHhCCCCEEEecCccCCCCCc-----CCCCCHHHHHHHHHc-CCCEEEECCCCCHHHHHHHHHcCCCEE
Confidence            4566789999999999999832 111111001     113457889999988 999999999987788888899999999


Q ss_pred             e-ecCCCChhHHHHHH
Q 037779          119 D-ESEVLTPADEENHI  133 (310)
Q Consensus       119 ~-~~~~~~~~~~~~~~  133 (310)
                      . ++....|....+.+
T Consensus       208 ~VGsai~~p~~~~~~f  223 (229)
T 3q58_A          208 TVGSAITRIEHICQWF  223 (229)
T ss_dssp             EECHHHHCHHHHHHHH
T ss_pred             EEchHhcChHHHHHHH
Confidence            8 44444455444443

>2ffc_A Orotidine 5-monophosphate decarboxylase; PV-PF10_0225, SGC, structural genomics, struc genomics consortium, lyase; HET: U5P; 1.70A {Plasmodium vivax} SCOP: c.1.2.3 PDB: 2guu_A*

Probab=95.34  E-value=0.23  Score=46.16  Aligned_cols=58  Identities=28%  Similarity=0.389  Sum_probs=43.2

Q ss_pred             HHHHHhc-CCCCEEEEccCCCCC-HHHHHHHHHcCCC------EEEEccccccCCCHHHHHHHHHHHHH
Q 037779          213 VMQTKQL-GRLPVVHFAAGGVAT-PADAAMMMQLGCD------GVFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       213 ~~~i~~~-~~iPVv~ia~GGI~t-~~di~~~~~~Gad------gV~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                      +..+++. .+.+++   .-||+. ..|..++++.|+|      -++||++|+++.||.+.++++++.+.
T Consensus       280 l~~IR~~~~~~~iL---tPGIgaqGGD~~~a~~~Gad~~~~~~iIvVGR~I~~A~dp~~AA~~i~~ei~  345 (353)
T 2ffc_A          280 IKKIRELFPDCYIL---APGVGAQKGDLRKMLCNGYSKNYEKVLINVGRAITKSGSPQQAAREYHQQIK  345 (353)
T ss_dssp             HHHHHHHCTTCCEE---ECCBSTTCBCHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCeEE---eCcccCCCCCHHHHHHcCCCcccCcEEEEECHHHcCCCCHHHHHHHHHHHHH
Confidence            3444443 345654   377741 2456677888998      89999999999999999999999886

>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A

Probab=95.33  E-value=1.5  Score=39.48  Aligned_cols=173  Identities=18%  Similarity=0.215  Sum_probs=95.8

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccch--hhhcCCC--CCCCC----hHHHHHHHhhcCcceEeeccc--cc----hHH
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPAD--IRAQGGV--ARMSD----PQLIKQIKSSVTIPVMAKARI--GH----FVE  106 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d--~r~~~G~--~~~~~----~~~i~~i~~~~~lPv~~kd~i--~~----~~~  106 (310)
                      .+.|+-.|+.++++|+++|- +    ++  .-.-.|-  ...-.    ...++.|++.+++||++..-.  +.    ...
T Consensus        21 ~a~D~~sA~~~~~aG~~ai~-v----s~~~~a~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~~~~~   95 (290)
T 2hjp_A           21 AAHNPLVAKLAEQAGFGGIW-G----SGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYV   95 (290)
T ss_dssp             ECSSHHHHHHHHHHTCSEEE-E----CHHHHHHHTTSCTTTCSCHHHHHHHHHHHHTTCSSCEEEECTTTTSSHHHHHHH
T ss_pred             cCCCHHHHHHHHHcCCCEEE-E----ChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCHHHHHHH
Confidence            45678889999999999982 2    11  1000121  01111    234567778889998874222  32    234


Q ss_pred             HHHHHHcCCCeeeecCC----------------CChhHHHHHHHh---c--CCCCcEEeecCCH------HHH----HHH
Q 037779          107 AQILEAIGVDYVDESEV----------------LTPADEENHINK---H--NFRVPFVCGCRNL------GES----LRR  155 (310)
Q Consensus       107 ~~~~~~aGad~v~~~~~----------------~~~~~~~~~~~~---~--~~~l~v~~~v~t~------~ea----~~a  155 (310)
                      +..+.++||.+|.+-+.                .+..+....++.   .  ..+..+..-+...      +++    +..
T Consensus        96 v~~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~g~~~ai~Ra~ay  175 (290)
T 2hjp_A           96 VPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQAY  175 (290)
T ss_dssp             HHHHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhccccHHHHHHHHHHH
Confidence            56677799999983221                122233444432   1  1334455443332      333    334


Q ss_pred             HHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCC--CCEEEEccCCCC
Q 037779          156 IREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGR--LPVVHFAAGGVA  233 (310)
Q Consensus       156 ~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~--iPVv~ia~GGI~  233 (310)
                      .++|||.|.+.+.                                     + .+.+.++.+.+..+  +|+++-...+ .
T Consensus       176 ~eAGAd~i~~e~~-------------------------------------~-~~~~~~~~i~~~~~~~vP~i~n~~~~-~  216 (290)
T 2hjp_A          176 EEAGADAILIHSR-------------------------------------Q-KTPDEILAFVKSWPGKVPLVLVPTAY-P  216 (290)
T ss_dssp             HHTTCSEEEECCC-------------------------------------C-SSSHHHHHHHHHCCCSSCEEECGGGC-T
T ss_pred             HHcCCcEEEeCCC-------------------------------------C-CCHHHHHHHHHHcCCCCCEEEeccCC-C
Confidence            4678888777531                                     0 11234455555555  8985321111 1


Q ss_pred             CHHHHHHHHHcC-CCEEEEccccccC
Q 037779          234 TPADAAMMMQLG-CDGVFVGSGVFKS  258 (310)
Q Consensus       234 t~~di~~~~~~G-adgV~VGsai~~~  258 (310)
                       .-...++.++| +.-|..|...+++
T Consensus       217 -~~~~~eL~~lG~v~~v~~~~~~~ra  241 (290)
T 2hjp_A          217 -QLTEADIAALSKVGIVIYGNHAIRA  241 (290)
T ss_dssp             -TSCHHHHHTCTTEEEEEECSHHHHH
T ss_pred             -CCCHHHHHhcCCeeEEEechHHHHH
Confidence             12568889999 9999999998874

>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori}

Probab=95.33  E-value=0.11  Score=45.49  Aligned_cols=40  Identities=20%  Similarity=0.415  Sum_probs=32.3

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHH
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVR  263 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~dp~~  263 (310)
                      .++|  +..|+| +++++.+++. .++||++||++-++++++..
T Consensus       188 ~vrI--lYGGSV-~~~N~~~l~~~~diDG~LVGgAsl~a~~f~~  228 (233)
T 2jgq_A          188 KTPL--LYGGSV-NTQNAKEILGIDSVDGLLIGSASWELENFKT  228 (233)
T ss_dssp             TSCE--EEESSC-CTTTHHHHHTSTTCCEEEESGGGGSHHHHHH
T ss_pred             CCcE--EEcCCc-ChhhHHHHhcCCCCCeeEecHHHhChHHHHH
Confidence            5788  679999 5889888885 69999999999998655443

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5

Probab=95.30  E-value=0.61  Score=43.05  Aligned_cols=169  Identities=14%  Similarity=0.082  Sum_probs=94.6

Q ss_pred             HHHHHHHHcCCcEEEecc--ccc-chhhhcCCCCCCCChHHHHHHHhh-cCcceEeec--cccchHHHHHHHHcCCCeee
Q 037779           46 EQARIAEEAGACAVMALE--RVP-ADIRAQGGVARMSDPQLIKQIKSS-VTIPVMAKA--RIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~--~~~-~d~r~~~G~~~~~~~~~i~~i~~~-~~lPv~~kd--~i~~~~~~~~~~~aGad~v~  119 (310)
                      ++++.+.++|++.|-.-.  ..| .++.+  |.......+.++++++. .+.|+.+-.  ..+..+.++.+.++|+|.+.
T Consensus        34 ~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~--g~~~~~~~e~l~~i~~~~~~~~i~~l~~p~~~~~~~i~~a~~aGvd~v~  111 (345)
T 1nvm_A           34 AIARALDKAKVDSIEVAHGDGLQGSSFNY--GFGRHTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQAGARVVR  111 (345)
T ss_dssp             HHHHHHHHHTCSEEECSCTTSTTCCBTTT--BCCSSCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHHcCCCEEEEecCCCCCCCCCcc--cCCCCCHHHHHHHHHhhCCCCEEEEEecCCcccHHHHHHHHhCCcCEEE
Confidence            679999999999982210  000 01111  22233456778888765 366665431  12234678888999999987


Q ss_pred             ecCCC----ChhHHHHHHHhcCCCCcEEee---cCCHHH----HHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcce
Q 037779          120 ESEVL----TPADEENHINKHNFRVPFVCG---CRNLGE----SLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDI  188 (310)
Q Consensus       120 ~~~~~----~~~~~~~~~~~~~~~l~v~~~---v~t~~e----a~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~  188 (310)
                      +....    ...+.++.+++++..+.+.++   -.+++.    ++.+.+.|++.|.+....+..                
T Consensus       112 I~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~e~~~~ia~~~~~~Ga~~i~l~DT~G~~----------------  175 (345)
T 1nvm_A          112 VATHCTEADVSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYMADSGGAM----------------  175 (345)
T ss_dssp             EEEETTCGGGGHHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEEECTTCCC----------------
T ss_pred             EEEeccHHHHHHHHHHHHHHCCCEEEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCcc----------------
Confidence            43221    234555666666554444431   123442    334556788888775322211                


Q ss_pred             ecccccCchhHHhhhccCCCcHHHHHHHHhcC--CCCEEEEc----cCCCCCHHHHHHHHHcCCCEEEE
Q 037779          189 RVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG--RLPVVHFA----AGGVATPADAAMMMQLGCDGVFV  251 (310)
Q Consensus       189 ~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~--~iPVv~ia----~GGI~t~~di~~~~~~GadgV~V  251 (310)
                            .++.          ..++++.+++..  ++|+-  .    .-|.. ..+...++++||+.|=.
T Consensus       176 ------~P~~----------v~~lv~~l~~~~~~~~pi~--~H~Hn~~G~a-vAn~laA~~aGa~~vd~  225 (345)
T 1nvm_A          176 ------SMND----------IRDRMRAFKAVLKPETQVG--MHAHHNLSLG-VANSIVAVEEGCDRVDA  225 (345)
T ss_dssp             ------CHHH----------HHHHHHHHHHHSCTTSEEE--EECBCTTSCH-HHHHHHHHHTTCCEEEE
T ss_pred             ------CHHH----------HHHHHHHHHHhcCCCceEE--EEECCCccHH-HHHHHHHHHcCCCEEEe
Confidence                  1110          245566666654  56662  1    13764 78888889999887643

>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A

Probab=95.28  E-value=1.2  Score=40.55  Aligned_cols=175  Identities=17%  Similarity=0.128  Sum_probs=95.2

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccch-hh-hcCCC--CCCCCh----HHHHHHHhhc-CcceEeecccc--ch----H
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPAD-IR-AQGGV--ARMSDP----QLIKQIKSSV-TIPVMAKARIG--HF----V  105 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d-~r-~~~G~--~~~~~~----~~i~~i~~~~-~lPv~~kd~i~--~~----~  105 (310)
                      .+.|.-.|+.++++|++++-.--    + .- ...|-  ...-..    ..++.|++.+ ++||++..-.+  ..    .
T Consensus        24 ~a~D~~sA~l~e~aGf~ai~vsG----~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~~PviaD~d~Gyg~~~~v~~   99 (302)
T 3fa4_A           24 GVYDGLSARVALSAGFDALYMTG----AGTAASVHGQADLGICTLNDMRANAEMISNISPSTPVIADADTGYGGPIMVAR   99 (302)
T ss_dssp             EECSHHHHHHHHTTTCSCEEECH----HHHHHHHHSCCSSSCCCHHHHHHHHHHHHTTSTTSCEEEECTTTTSSHHHHHH
T ss_pred             cCcCHHHHHHHHHcCCCEEEeCc----HHHHHHHcCCCCCCcCCHHHHHHHHHHHHhhccCCCEEEECCCCCCCHHHHHH
Confidence            56778899999999999973200    0 00 00111  111112    2345666654 89998853222  22    3


Q ss_pred             HHHHHHHcCCCeeeecCC--------------CChhHHHHHHHh-------cCCCCcEEeecCCH-----HHH----HHH
Q 037779          106 EAQILEAIGVDYVDESEV--------------LTPADEENHINK-------HNFRVPFVCGCRNL-----GES----LRR  155 (310)
Q Consensus       106 ~~~~~~~aGad~v~~~~~--------------~~~~~~~~~~~~-------~~~~l~v~~~v~t~-----~ea----~~a  155 (310)
                      .+..+.++||.+|.+-+.              .+.++....++.       .+.++.+++-+...     +|+    +..
T Consensus       100 tv~~l~~aGaagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~~gldeAi~Ra~ay  179 (302)
T 3fa4_A          100 TTEQYSRSGVAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVVIARTDSLQTHGYEESVARLRAA  179 (302)
T ss_dssp             HHHHHHHTTCCEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECCHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCcEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEEEEEecccccCCHHHHHHHHHHH
Confidence            356677899999983222              133344444432       13445555555443     222    223


Q ss_pred             HHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEE-EccCCCC
Q 037779          156 IREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVH-FAAGGVA  233 (310)
Q Consensus       156 ~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~-ia~GGI~  233 (310)
                      .++|||.|.+.+.                                      . +.+.++.+.+.. ..|+++ +..+|-.
T Consensus       180 ~eAGAD~ifi~g~--------------------------------------~-~~~ei~~~~~~~~~~Pl~~n~~~~g~~  220 (302)
T 3fa4_A          180 RDAGADVGFLEGI--------------------------------------T-SREMARQVIQDLAGWPLLLNMVEHGAT  220 (302)
T ss_dssp             HTTTCSEEEETTC--------------------------------------C-CHHHHHHHHHHTTTSCEEEECCTTSSS
T ss_pred             HHcCCCEEeecCC--------------------------------------C-CHHHHHHHHHHhcCCceeEEEecCCCC
Confidence            3567777766532                                      1 122334444432 467743 2345532


Q ss_pred             CHHHHHHHHHcCCCEEEEccccccC
Q 037779          234 TPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       234 t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      ..-...++.++|+.-|+.+..++++
T Consensus       221 p~~~~~eL~~lGv~~v~~~~~~~ra  245 (302)
T 3fa4_A          221 PSISAAEAKEMGFRIIIFPFAALGP  245 (302)
T ss_dssp             CCCCHHHHHHHTCSEEEETTTTHHH
T ss_pred             CCCCHHHHHHcCCCEEEEchHHHHH
Confidence            1235788889999999999988873

>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}

Probab=95.25  E-value=0.094  Score=46.76  Aligned_cols=71  Identities=24%  Similarity=0.268  Sum_probs=55.6

Q ss_pred             CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHh-hcC-cceEeeccccchHHHHHHHHcCCCeee
Q 037779           43 VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS-SVT-IPVMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        43 ~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~-~~~-lPv~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      .|++.++.+++.|+++|+.+   +..+  ..| .-..+++.++.+++ ..+ +||++-.+|++.+++..+.++|||.|+
T Consensus       133 ~D~~~ak~l~~~G~~aVmPl---g~pI--GsG-~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVl  205 (268)
T 2htm_A          133 PDLVLAKRLAALGTATVMPL---AAPI--GSG-WGVRTRALLELFAREKASLPPVVVDAGLGLPSHAAEVMELGLDAVL  205 (268)
T ss_dssp             SCHHHHHHHHHHTCSCBEEB---SSST--TTC-CCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHHHHHHHTTCCEEE
T ss_pred             CCHHHHHHHHhcCCCEEEec---CccC--cCC-cccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHHHHHHHHcCCCEEE
Confidence            46899999999999998654   1111  111 12346888999998 678 999999899888889999999999988

>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A

Probab=95.24  E-value=1.5  Score=38.66  Aligned_cols=175  Identities=14%  Similarity=0.034  Sum_probs=96.2

Q ss_pred             cCCCHHHHHHHHHcCCcEE-EecccccchhhhcCCCCCCCChHHHHHHH---hhcCcceEeeccccchHHHHHHHHcCCC
Q 037779           41 DVVTPEQARIAEEAGACAV-MALERVPADIRAQGGVARMSDPQLIKQIK---SSVTIPVMAKARIGHFVEAQILEAIGVD  116 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I-~~l~~~~~d~r~~~G~~~~~~~~~i~~i~---~~~~lPv~~kd~i~~~~~~~~~~~aGad  116 (310)
                      ...+++.++.+...|+|++ .+++..|.+            .+..+...   +..+.|++++..-.+...++.+..+|++
T Consensus        26 ~v~~p~~~e~a~~~gaD~v~lDlEd~p~~------------~~~a~~~~~~~~~~~~~~~VRv~~~~~~~i~~~l~~g~~   93 (256)
T 1dxe_A           26 ALSNPISTEVLGLAGFDWLVLDGEHAPND------------ISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFY   93 (256)
T ss_dssp             CSCSHHHHHHHTTSCCSEEEEESSSSSCC------------HHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHHHHTTCC
T ss_pred             eCCCHHHHHHHHhCCCCEEEEcCCCCCCC------------HHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHHHhcCCc
Confidence            4567999999999999987 334221222            22222222   2245667666433333446777789999


Q ss_pred             eeeecCCCChhHHHHHHHhcC-----------------------------CCCcEEeecCCHHHHHHHHH----hCCCEE
Q 037779          117 YVDESEVLTPADEENHINKHN-----------------------------FRVPFVCGCRNLGESLRRIR----EGAAMI  163 (310)
Q Consensus       117 ~v~~~~~~~~~~~~~~~~~~~-----------------------------~~l~v~~~v~t~~ea~~a~~----~Gad~I  163 (310)
                      .|..+...++.++........                             ..+.+++-+.|++-+..+.+    .|.|.+
T Consensus        94 gI~~P~V~s~~ev~~~~~~~~~~p~g~Rg~~~~~~~~~~g~~~~~~~~~~~~~~v~~~IEt~~av~~~~eIa~~~~vd~l  173 (256)
T 1dxe_A           94 NFLIPFVETKEEAELAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDNVDAIAATEGVDGI  173 (256)
T ss_dssp             EEEESCCCSHHHHHHHHHTTSCTTTCCCCCCSSSGGGGGGTSTTHHHHHTTSCEEEEEECSHHHHHTHHHHHTSTTCCEE
T ss_pred             eeeecCcCCHHHHHHHHHHhcCCCCCccCCCcchhhhhcCchHHHHHhcCcccEEEEEECCHHHHHhHHHHhCCCCCCEE
Confidence            998877767777655443311                             12556666777764433322    267777


Q ss_pred             EEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHh---cCCCCEEEEccCCCCCHHHHHH
Q 037779          164 RTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQ---LGRLPVVHFAAGGVATPADAAM  240 (310)
Q Consensus       164 ~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~---~~~iPVv~ia~GGI~t~~di~~  240 (310)
                      .+...          +...+++.     ......+         .-...+..+..   ...+|+.++  .+  +++.+..
T Consensus       174 ~iG~~----------DL~~~lg~-----~~~~~~p---------~v~~a~~~iv~aa~a~G~~~~v~--~~--d~~~~~~  225 (256)
T 1dxe_A          174 FVGPS----------DLAAALGH-----LGNASHP---------DVQKAIQHIFNRASAHGKPSGIL--AP--VEADARR  225 (256)
T ss_dssp             EECHH----------HHHHHTTC-----TTCTTSH---------HHHHHHHHHHHHHHHTTCCEEEE--CC--SHHHHHH
T ss_pred             EEChH----------HHHHHhCC-----CCCCCCH---------HHHHHHHHHHHHHHHhCCceEEe--cC--CHHHHHH
Confidence            76411          11111110     0000000         01122222221   246777533  22  6999999


Q ss_pred             HHHcCCCEEEEcccc
Q 037779          241 MMQLGCDGVFVGSGV  255 (310)
Q Consensus       241 ~~~~GadgV~VGsai  255 (310)
                      +++.|++.+.+|+-.
T Consensus       226 ~~~~G~~~~s~~~d~  240 (256)
T 1dxe_A          226 YLEWGATFVAVGSDL  240 (256)
T ss_dssp             HHHTTCCEEEEEEHH
T ss_pred             HHHcCCCEEEechHH
Confidence            999999999999843

>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A

Probab=95.11  E-value=1.5  Score=39.72  Aligned_cols=92  Identities=15%  Similarity=0.152  Sum_probs=51.5

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGad  116 (310)
                      +.++.+.+.|+++|..+.  .|     +-+..+...   +.++.+.+.+  ++||++...-..    .+.++.+.++|||
T Consensus        40 ~lv~~li~~Gv~gi~v~G--tt-----GE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gad  112 (304)
T 3l21_A           40 RLANHLVDQGCDGLVVSG--TT-----GESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAH  112 (304)
T ss_dssp             HHHHHHHHTTCSEEEESS--TT-----TTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHcCCCEEEeCc--cc-----cchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence            678889999999985441  01     000112222   2344444443  589998754332    2456777889999


Q ss_pred             eee-ecCC---CChhHHHHHHHh--cCCCCcEEe
Q 037779          117 YVD-ESEV---LTPADEENHINK--HNFRVPFVC  144 (310)
Q Consensus       117 ~v~-~~~~---~~~~~~~~~~~~--~~~~l~v~~  144 (310)
                      +++ .+..   .+.+.+.+.++.  ...++++++
T Consensus       113 avlv~~P~y~~~s~~~l~~~f~~va~a~~lPiil  146 (304)
T 3l21_A          113 GLLVVTPYYSKPPQRGLQAHFTAVADATELPMLL  146 (304)
T ss_dssp             EEEEECCCSSCCCHHHHHHHHHHHHTSCSSCEEE
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence            988 3322   245566666654  223455443

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=95.10  E-value=1.3  Score=40.02  Aligned_cols=166  Identities=13%  Similarity=-0.003  Sum_probs=88.0

Q ss_pred             HHHHHHHHcCCcEEEecccc-cchhhhcCCCCCCCCh-HHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeecCC
Q 037779           46 EQARIAEEAGACAVMALERV-PADIRAQGGVARMSDP-QLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEV  123 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~-~~d~r~~~G~~~~~~~-~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~  123 (310)
                      ++++.+.+.|++.|-..-++ |.....+      .+. +.++.+++..++|+.+..  ...+.++.+.++|++.|.+...
T Consensus        34 ~i~~~L~~~Gv~~IE~g~~~~~~~~~~~------~d~~~~~~~~~~~~~~~~~~l~--~~~~~i~~a~~aG~~~v~i~~~  105 (302)
T 2ftp_A           34 RLVDDLSAAGLDYIEVGSFVSPKWVPQM------AGSAEVFAGIRQRPGVTYAALA--PNLKGFEAALESGVKEVAVFAA  105 (302)
T ss_dssp             HHHHHHHHTTCSEEEEEECSCTTTCGGG------TTHHHHHHHSCCCTTSEEEEEC--CSHHHHHHHHHTTCCEEEEEEE
T ss_pred             HHHHHHHHcCcCEEEECCCcCccccccc------cCHHHHHHHhhhcCCCEEEEEe--CCHHHHHHHHhCCcCEEEEEEe
Confidence            67999999999988332111 1112211      112 334555544466665433  2446788899999999874221


Q ss_pred             CCh------------------hHHHHHHHhcCCCCcEEee---------cCCHHHHHH----HHHhCCCEEEEecCCCCC
Q 037779          124 LTP------------------ADEENHINKHNFRVPFVCG---------CRNLGESLR----RIREGAAMIRTKGEAGTG  172 (310)
Q Consensus       124 ~~~------------------~~~~~~~~~~~~~l~v~~~---------v~t~~ea~~----a~~~Gad~I~v~g~~~~~  172 (310)
                      .+.                  .+.++.+++++..+...+.         -.+++++.+    +.+.|+|.+.+--..+. 
T Consensus       106 ~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~-  184 (302)
T 2ftp_A          106 ASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMGCYEVSLGDTIGV-  184 (302)
T ss_dssp             SCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTTCSEEEEEESSSC-
T ss_pred             cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC-
Confidence            121                  2233334443322211111         134554433    23567776665310000 


Q ss_pred             chHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEc--cCCCCCHHHHHHHHHcCCCEE
Q 037779          173 NIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFA--AGGVATPADAAMMMQLGCDGV  249 (310)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia--~GGI~t~~di~~~~~~GadgV  249 (310)
                                           ..+.          ...++++.+++.. ++|+.+=.  ..|.. ..+...++++|++-|
T Consensus       185 ---------------------~~P~----------~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla-~An~laAv~aGa~~v  232 (302)
T 2ftp_A          185 ---------------------GTAG----------ATRRLIEAVASEVPRERLAGHFHDTYGQA-LANIYASLLEGIAVF  232 (302)
T ss_dssp             ---------------------CCHH----------HHHHHHHHHTTTSCGGGEEEEEBCTTSCH-HHHHHHHHHTTCCEE
T ss_pred             ---------------------cCHH----------HHHHHHHHHHHhCCCCeEEEEeCCCccHH-HHHHHHHHHhCCCEE
Confidence                                 0110          1255666666654 47776444  58884 788999999999977


Q ss_pred             EEc
Q 037779          250 FVG  252 (310)
Q Consensus       250 ~VG  252 (310)
                      =+.
T Consensus       233 d~t  235 (302)
T 2ftp_A          233 DSS  235 (302)
T ss_dssp             EEB
T ss_pred             Eec
Confidence            653

>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A

Probab=95.09  E-value=0.29  Score=44.15  Aligned_cols=85  Identities=11%  Similarity=0.142  Sum_probs=50.1

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCC-------hHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSD-------PQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYV  118 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~-------~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v  118 (310)
                      +.++.+.+.||+.| +++...|.+    |+.....       ...++.+++.+++|+++..+  ..+-++.+.++|++.|
T Consensus        42 ~~a~~~v~~GAdiI-DIGgestrP----ga~~v~~~eE~~rv~pvi~~l~~~~~~piSIDT~--~~~va~aAl~aGa~iI  114 (282)
T 1aj0_A           42 KHANLMINAGATII-DVGGESTRP----GAAEVSVEEELQRVIPVVEAIAQRFEVWISVDTS--KPEVIRESAKVGAHII  114 (282)
T ss_dssp             HHHHHHHHHTCSEE-EEESSCCST----TCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECC--CHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHCCCCEE-EECCCcCCC----CCCcCCHHHHHHHHHHHHHHHHhhcCCeEEEeCC--CHHHHHHHHHcCCCEE
Confidence            67899999999998 664212211    1111111       22344555556899988654  3366778888999999


Q ss_pred             e-ecCCCChhHHHHHHHhcCC
Q 037779          119 D-ESEVLTPADEENHINKHNF  138 (310)
Q Consensus       119 ~-~~~~~~~~~~~~~~~~~~~  138 (310)
                      - ++.. ..++....+.+++.
T Consensus       115 Ndvsg~-~d~~~~~~~a~~~~  134 (282)
T 1aj0_A          115 NDIRSL-SEPGALEAAAETGL  134 (282)
T ss_dssp             EETTTT-CSTTHHHHHHHHTC
T ss_pred             EECCCC-CCHHHHHHHHHhCC
Confidence            7 3322 34455555555443

>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} SCOP: c.1.1.1

Probab=95.05  E-value=0.12  Score=46.42  Aligned_cols=42  Identities=24%  Similarity=0.247  Sum_probs=33.4

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHH
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVRRA  265 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~dp~~~~  265 (310)
                      .++|  +..|+| +++++.+++. .++||++||++-.+++++...+
T Consensus       222 ~vrI--LYGGSV-~~~N~~el~~~~diDG~LVGgASLka~~F~~Ii  264 (275)
T 1mo0_A          222 ATRI--IYGGSV-TADNAAELGKKPDIDGFLVGGASLKPDFVKIIN  264 (275)
T ss_dssp             HSCE--EEESSC-CTTTHHHHTTSTTCCEEEESGGGGSTHHHHHHH
T ss_pred             cccE--EEcCCC-CHhhHHHHhcCCCCCeeEechHHhChHHHHHHH
Confidence            3688  579999 5899988885 6999999999999976554443

>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A

Probab=95.03  E-value=1.3  Score=39.73  Aligned_cols=98  Identities=12%  Similarity=0.041  Sum_probs=54.3

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCC--CCCCChH----HHHHHHhhc-CcceEeeccc---cchHH----
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGV--ARMSDPQ----LIKQIKSSV-TIPVMAKARI---GHFVE----  106 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~--~~~~~~~----~i~~i~~~~-~lPv~~kd~i---~~~~~----  106 (310)
                      .+-|+-.|+.++++|++.|..--..   .....|.  ...-..+    ..+.|++.+ +.||++..-.   ++.+.    
T Consensus        35 tayDa~sA~l~e~aG~d~ilvGdSl---~~~~lG~~dt~~vtldem~~h~~aV~r~~~~~~vvaD~pfgsY~s~~~a~~~  111 (275)
T 3vav_A           35 TCYDASFAALLDRANVDVQLIGDSL---GNVLQGQTTTLPVTLDDIAYHTACVARAQPRALIVADLPFGTYGTPADAFAS  111 (275)
T ss_dssp             ECCSHHHHHHHHHTTCSEEEECTTH---HHHTTCCSSSTTCCHHHHHHHHHHHHHTCCSSEEEEECCTTSCSSHHHHHHH
T ss_pred             eCcCHHHHHHHHHcCCCEEEECcHH---HHHHcCCCCCCccCHHHHHHHHHHHHhcCCCCCEEEecCCCCCCCHHHHHHH
Confidence            4567889999999999998432000   0001111  1111222    345677777 4778775322   22222    


Q ss_pred             HHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEE
Q 037779          107 AQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFV  143 (310)
Q Consensus       107 ~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~  143 (310)
                      +..+.++||+.|.+-+...+.+.++.+.+.  +++++
T Consensus       112 a~rl~kaGa~aVklEdg~~~~~~i~~l~~~--GIpv~  146 (275)
T 3vav_A          112 AVKLMRAGAQMVKFEGGEWLAETVRFLVER--AVPVC  146 (275)
T ss_dssp             HHHHHHTTCSEEEEECCGGGHHHHHHHHHT--TCCEE
T ss_pred             HHHHHHcCCCEEEECCchhHHHHHHHHHHC--CCCEE
Confidence            345566899999844443456667777654  34443

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=95.03  E-value=0.091  Score=49.43  Aligned_cols=85  Identities=15%  Similarity=0.128  Sum_probs=62.3

Q ss_pred             ChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeecC--C------CChhHHHHHHHhcCCCCcEEe--ecCCH
Q 037779           80 DPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESE--V------LTPADEENHINKHNFRVPFVC--GCRNL  149 (310)
Q Consensus        80 ~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~--~------~~~~~~~~~~~~~~~~l~v~~--~v~t~  149 (310)
                      +.+.++.+++.+++||++|. +.+.+.++.+.++|+|.|..+.  .      .+..+.+..+.+. .+.++++  ++++.
T Consensus       213 ~~~~i~~i~~~~~~Pv~vkg-v~t~e~a~~a~~aGad~I~vs~~gg~~~d~~~~~~~~l~~v~~~-~~~pVia~GGI~~~  290 (380)
T 1p4c_A          213 NWEALRWLRDLWPHKLLVKG-LLSAEDADRCIAEGADGVILSNHGGRQLDCAISPMEVLAQSVAK-TGKPVLIDSGFRRG  290 (380)
T ss_dssp             CHHHHHHHHHHCCSEEEEEE-ECCHHHHHHHHHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHHH-HCSCEEECSSCCSH
T ss_pred             cHHHHHHHHHhcCCCEEEEe-cCcHHHHHHHHHcCCCEEEEcCCCCCcCCCCcCHHHHHHHHHHH-cCCeEEEECCCCCH
Confidence            46788999999999999985 4456788999999999987421  1      1122344444431 2346666  48999


Q ss_pred             HHHHHHHHhCCCEEEEe
Q 037779          150 GESLRRIREGAAMIRTK  166 (310)
Q Consensus       150 ~ea~~a~~~Gad~I~v~  166 (310)
                      +++.+++.+|||.+.+.
T Consensus       291 ~dv~kal~~GAdaV~iG  307 (380)
T 1p4c_A          291 SDIVKALALGAEAVLLG  307 (380)
T ss_dssp             HHHHHHHHTTCSCEEES
T ss_pred             HHHHHHHHhCCcHhheh
Confidence            99999999999999985

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=94.95  E-value=0.26  Score=48.32  Aligned_cols=114  Identities=24%  Similarity=0.298  Sum_probs=75.6

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeee---
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDE---  120 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~---  120 (310)
                      .+-++++.++|++.| ++     |..  .|.. ..-.+.++.+++.. ++||++.... +.+.++.+..+|||.|..   
T Consensus       283 ~eR~~aLv~AGvD~i-vi-----D~a--hGhs-~~v~~~i~~ik~~~p~~~viaGNVa-T~e~a~~Li~aGAD~vkVGiG  352 (556)
T 4af0_A          283 KDRLKLLAEAGLDVV-VL-----DSS--QGNS-VYQIEFIKWIKQTYPKIDVIAGNVV-TREQAAQLIAAGADGLRIGMG  352 (556)
T ss_dssp             HHHHHHHHHTTCCEE-EE-----CCS--CCCS-HHHHHHHHHHHHHCTTSEEEEEEEC-SHHHHHHHHHHTCSEEEECSS
T ss_pred             HHHHHHHHhcCCcEE-EE-----ecc--cccc-HHHHHHHHHHHhhCCcceEEecccc-CHHHHHHHHHcCCCEEeecCC
Confidence            367999999999988 44     222  1221 11256778888776 7888776544 446788899999999861   


Q ss_pred             c-C--------CCChhHH--HHHHH-h-cCCCCcEEee--cCCHHHHHHHHHhCCCEEEEecC
Q 037779          121 S-E--------VLTPADE--ENHIN-K-HNFRVPFVCG--CRNLGESLRRIREGAAMIRTKGE  168 (310)
Q Consensus       121 ~-~--------~~~~~~~--~~~~~-~-~~~~l~v~~~--v~t~~ea~~a~~~Gad~I~v~g~  168 (310)
                      + .        ....+++  +..+. . +..+++++++  +++.-++.+|+.+|||+|++.+.
T Consensus       353 pGSiCtTr~v~GvG~PQ~tAi~~~a~~a~~~~vpvIADGGI~~sGDi~KAlaaGAd~VMlGsl  415 (556)
T 4af0_A          353 SGSICITQEVMAVGRPQGTAVYAVAEFASRFGIPCIADGGIGNIGHIAKALALGASAVMMGGL  415 (556)
T ss_dssp             CSTTBCCTTTCCSCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTT
T ss_pred             CCcccccccccCCCCcHHHHHHHHHHHHHHcCCCEEecCCcCcchHHHHHhhcCCCEEEEchh
Confidence            1 0        0111222  11121 1 3467889885  89999999999999999998643

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=94.91  E-value=0.056  Score=46.42  Aligned_cols=92  Identities=20%  Similarity=0.175  Sum_probs=59.5

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-  119 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-  119 (310)
                      ++.+++.++.+.+.|++.|..-++..++.. +.+.....+.+.++++++.+++|+++...+.+.+.+..+.++|||.+. 
T Consensus       125 ~~~t~~e~~~~~~~G~d~i~~~~~g~t~~~-~~~~~~~~~~~~~~~~~~~~~ipvia~GGI~~~~~~~~~~~~Gad~v~v  203 (223)
T 1y0e_A          125 DIATVEEAKNAARLGFDYIGTTLHGYTSYT-QGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVV  203 (223)
T ss_dssp             ECSSHHHHHHHHHTTCSEEECTTTTSSTTS-TTCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred             cCCCHHHHHHHHHcCCCEEEeCCCcCcCCC-CCCCCCcccHHHHHHHHhhCCCCEEEecCCCCHHHHHHHHHcCCCEEEE
Confidence            445677888899999999853322122211 111001123567888888889999999998766788888899999997 


Q ss_pred             ecCCCChhHHHHHH
Q 037779          120 ESEVLTPADEENHI  133 (310)
Q Consensus       120 ~~~~~~~~~~~~~~  133 (310)
                      .+....+....+.+
T Consensus       204 G~al~~p~~~~~~~  217 (223)
T 1y0e_A          204 GGAITRPKEITKRF  217 (223)
T ss_dssp             CHHHHCHHHHHHHH
T ss_pred             ChHHcCcHHHHHHH
Confidence            44433444444443

>2yc6_A Triosephosphate isomerase; glycolysis; HET: PGA; 1.45A {Giardia intestinalis} PDB: 2dp3_A 2yc7_A* 3pf3_A 2yc8_A

Probab=94.91  E-value=0.56  Score=41.68  Aligned_cols=36  Identities=19%  Similarity=0.375  Sum_probs=31.5

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccCC
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSG  259 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~~  259 (310)
                      .++|  +..|++ +++|+.++++. ++||++||++-++++
T Consensus       208 ~vrI--lYGGSV-~~~N~~~l~~~~diDG~LVGgAsL~a~  244 (257)
T 2yc6_A          208 HIRI--IYGGSA-NGSNNEKLGQCPNIDGFLVGGASLKPE  244 (257)
T ss_dssp             TCEE--EEESSC-CTTTHHHHHTSTTCCEEEESGGGGSTH
T ss_pred             cceE--EEcCcc-CHHHHHHHHcCCCCCeeeecHHHHHHH
Confidence            5777  679999 58999999987 999999999999865

>1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the ligand-free state, conformational heterogeneity, TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1 PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1* 8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A* 1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ...

Probab=94.90  E-value=0.12  Score=45.72  Aligned_cols=39  Identities=23%  Similarity=0.265  Sum_probs=32.1

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHH
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPV  262 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~dp~  262 (310)
                      .++|  +..|++ +++++.+++. .++||++||++-++++++.
T Consensus       203 ~vrI--lYGGSV-~~~N~~~l~~~~diDG~LVGgAsL~a~~F~  242 (248)
T 1r2r_A          203 STRI--IYGGSV-TGATCKELASQPDVDGFLVGGASLKPEFVD  242 (248)
T ss_dssp             HCCE--EECSCC-CTTTHHHHHTSTTCCEEEESGGGGSTHHHH
T ss_pred             cccE--EEcCCc-CHhHHHHHHcCCCCCeeEechHHhChHHHH
Confidence            3688  569999 5899988885 6999999999999966544

>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A 3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 3pvf_A 3py2_A 2vfd_A 2vfe_A*

Probab=94.88  E-value=0.24  Score=43.78  Aligned_cols=42  Identities=21%  Similarity=0.413  Sum_probs=35.4

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHHH
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~dp~~~~~  266 (310)
                      .++|  +..|++ +++|+.++++ .++||++||++-.+ +++...++
T Consensus       203 ~vrI--lYGGSV-~~~N~~~l~~~~diDG~LVGgAsL~-~~F~~ii~  245 (248)
T 1o5x_A          203 QIRI--LYGGSV-NTENCSSLIQQEDIDGFLVGNASLK-ESFVDIIK  245 (248)
T ss_dssp             HSEE--EECSCC-CTTTHHHHHTSTTCCEEEECGGGGS-TTHHHHHH
T ss_pred             cceE--EEcCCC-CHHHHHHHHcCCCCCeeEeeHHHHH-HHHHHHHH
Confidence            3677  679999 5889999997 79999999999999 88776554

>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}

Probab=94.87  E-value=2.2  Score=38.76  Aligned_cols=174  Identities=14%  Similarity=0.101  Sum_probs=105.7

Q ss_pred             HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHc--------CCCe
Q 037779           47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAI--------GVDY  117 (310)
Q Consensus        47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~a--------Gad~  117 (310)
                      ..+++++.++..|.++-  +...++.++.    -...++.+.+..++||.++ |.-..++.+..+.++        |-+.
T Consensus        43 vl~AAee~~sPvIlq~s--~g~~~y~g~~----~~~~~~~~A~~~~VPVaLHlDHg~~~e~i~~ai~~~~~~~~~~GFtS  116 (306)
T 3pm6_A           43 IIRAAEHKRSPAMILLF--PWAIQYADSL----LVRTAASACRAASVPITLHLDHAQDPEIIKRAADLSRSETHEPGFDS  116 (306)
T ss_dssp             HHHHHHHTTCCEEEEEC--HHHHHHHTTH----HHHHHHHHHHHCSSCEEEEEEEECCHHHHHHHHHTC------CCCSE
T ss_pred             HHHHHHHhCCCEEEEcC--hhHHhhccHH----HHHHHHHHHHHCCCCEEEEcCCCCCHHHHHHHHHhhhhccCCCCCCE
Confidence            46777788888876651  1112222221    1344555666689999886 333345677778888        9888


Q ss_pred             eeec-CCCChh-------HHHHHHHhcCCCCcEEe--------------------ecCCHHHHHHHHHhCCCEEEEe-cC
Q 037779          118 VDES-EVLTPA-------DEENHINKHNFRVPFVC--------------------GCRNLGESLRRIREGAAMIRTK-GE  168 (310)
Q Consensus       118 v~~~-~~~~~~-------~~~~~~~~~~~~l~v~~--------------------~v~t~~ea~~a~~~Gad~I~v~-g~  168 (310)
                      |-++ +.++.+       ++++.+++.+  +.+=+                    ..++++|+.+..+.|+|.+.+. |.
T Consensus       117 VMiDgS~~p~eENi~~Tk~vv~~ah~~g--vsVEaElG~igG~Edgv~~~~~~~~~yT~Peea~~Fv~TgvD~LAvaiGt  194 (306)
T 3pm6_A          117 IMVDMSHFSKEENLRLTRELVAYCNARG--IATEAEPGRIEGGEDGVQDTVDLEGVLTTPEESEEFVATGINWLAPAFGN  194 (306)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHHHHHTTT--CEEEECSSBCCCCBTTBCCCTTCCCBCCCHHHHHHHHTTTCSEECCCSSC
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHHHHHcC--CeEEEEeeeeccccCCccccccccccCCCHHHHHHHHHcCCCEEEEEcCc
Confidence            7633 223333       2333333322  21111                    1357889988778899988664 33


Q ss_pred             CCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCC
Q 037779          169 AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGC  246 (310)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~Ga  246 (310)
                      .++.                  ++.  .        ...-++++++.+.+..  ++|+|.=-++|+ ..+++++++++|.
T Consensus       195 ~HG~------------------Yk~--~--------~p~Ld~~~L~~I~~~v~~~vpLVlHGgSG~-p~e~i~~ai~~GV  245 (306)
T 3pm6_A          195 VHGN------------------YGP--R--------GVQLDYERLQRINEAVGERVGLVLHGADPF-TKEIFEKCIERGV  245 (306)
T ss_dssp             CSSC------------------CCT--T--------CCCCCHHHHHHHHHHHTTTSEEEECSCTTC-CHHHHHHHHHTTE
T ss_pred             cccC------------------cCC--C--------CCccCHHHHHHHHHHhCCCCCEEeeCCCCC-CHHHHHHHHHcCC
Confidence            3221                  000  0        0122578888887764  699876555677 4788999999999


Q ss_pred             CEEEEcccccc
Q 037779          247 DGVFVGSGVFK  257 (310)
Q Consensus       247 dgV~VGsai~~  257 (310)
                      .-|=++|.+..
T Consensus       246 ~KiNi~Tdl~~  256 (306)
T 3pm6_A          246 AKVNVNRAVNN  256 (306)
T ss_dssp             EEEEESHHHHH
T ss_pred             eEEEeChHHHH
Confidence            99999997653

>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A

Probab=94.84  E-value=0.13  Score=48.64  Aligned_cols=33  Identities=15%  Similarity=0.327  Sum_probs=29.3

Q ss_pred             EEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          226 HFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       226 ~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                      ++++||| +++++.++.+.|+|.+.||+.++..+
T Consensus       273 I~aSggl-~~~~i~~l~~~GvD~~gvGt~l~~~~  305 (398)
T 2i1o_A          273 IMVSGGL-DENTVKKLREAGAEAFGVGTSISSAK  305 (398)
T ss_dssp             EEEESSC-CHHHHHHHHHTTCCEEEECHHHHTCC
T ss_pred             EEEeCCC-CHHHHHHHHHcCCCEEEeCcccCCCC
Confidence            3789999 69999999999999999999888643

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=94.82  E-value=0.52  Score=43.14  Aligned_cols=117  Identities=19%  Similarity=0.169  Sum_probs=74.4

Q ss_pred             cCcceEeeccc--cchHHHHHHHHcCCCeeeecCCCChhHHHHHHHh-cC-CCCcEEee--c--CC-HHHHHHHHHhCCC
Q 037779           91 VTIPVMAKARI--GHFVEAQILEAIGVDYVDESEVLTPADEENHINK-HN-FRVPFVCG--C--RN-LGESLRRIREGAA  161 (310)
Q Consensus        91 ~~lPv~~kd~i--~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~-~~-~~l~v~~~--v--~t-~~ea~~a~~~Gad  161 (310)
                      ...|++.-.+-  .+.+.+..+..+|+-.++.....+++.+.+.+++ .. .+.++.+.  +  .+ .+.+..+.+.|+|
T Consensus        25 ~~~Pii~apM~gvs~~~la~av~~aGglG~i~~~~~~~~~l~~~i~~i~~~~~~p~gVnl~~~~~~~~~~~~~~~~~g~d  104 (326)
T 3bo9_A           25 IEHPILMGGMAWAGTPTLAAAVSEAGGLGIIGSGAMKPDDLRKAISELRQKTDKPFGVNIILVSPWADDLVKVCIEEKVP  104 (326)
T ss_dssp             CSSSEEECCCTTTSCHHHHHHHHHTTSBEEEECTTCCHHHHHHHHHHHHTTCSSCEEEEEETTSTTHHHHHHHHHHTTCS
T ss_pred             CCCCEEECCCCCCCCHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEEeccCCCHHHHHHHHHHCCCC
Confidence            46788775433  3556777888899877765544567666555544 21 22344443  2  12 3445566788999


Q ss_pred             EEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHH
Q 037779          162 MIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMM  241 (310)
Q Consensus       162 ~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~  241 (310)
                      +|.+++.                                       .+.++++.+++. .+||+    .++.+++++.++
T Consensus       105 ~V~l~~g---------------------------------------~p~~~~~~l~~~-g~~v~----~~v~s~~~a~~a  140 (326)
T 3bo9_A          105 VVTFGAG---------------------------------------NPTKYIRELKEN-GTKVI----PVVASDSLARMV  140 (326)
T ss_dssp             EEEEESS---------------------------------------CCHHHHHHHHHT-TCEEE----EEESSHHHHHHH
T ss_pred             EEEECCC---------------------------------------CcHHHHHHHHHc-CCcEE----EEcCCHHHHHHH
Confidence            9887621                                       123445555553 46663    367889999999


Q ss_pred             HHcCCCEEEE
Q 037779          242 MQLGCDGVFV  251 (310)
Q Consensus       242 ~~~GadgV~V  251 (310)
                      .+.|+|+|++
T Consensus       141 ~~~GaD~i~v  150 (326)
T 3bo9_A          141 ERAGADAVIA  150 (326)
T ss_dssp             HHTTCSCEEE
T ss_pred             HHcCCCEEEE
Confidence            9999999999

>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*

Probab=94.78  E-value=2.2  Score=38.44  Aligned_cols=83  Identities=17%  Similarity=0.229  Sum_probs=47.0

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGad  116 (310)
                      +.++.+.+.|+++|..+-  .|     +-+..+...   +.++.+.+.+  ++||++...-..    .+.++.+.++|||
T Consensus        37 ~lv~~li~~Gv~gl~v~G--tT-----GE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gad  109 (301)
T 1xky_A           37 KLVNYLIDNGTTAIVVGG--TT-----GESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVD  109 (301)
T ss_dssp             HHHHHHHHTTCCEEEESS--TT-----TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHcCCCEEEECc--cc-----cChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHHhcCCC
Confidence            678888999999985441  01     001112222   2344444443  589998754432    2455677789999


Q ss_pred             eee-ecCC---CChhHHHHHHHh
Q 037779          117 YVD-ESEV---LTPADEENHINK  135 (310)
Q Consensus       117 ~v~-~~~~---~~~~~~~~~~~~  135 (310)
                      +++ .+..   .+.+.+.+.++.
T Consensus       110 avlv~~P~y~~~s~~~l~~~f~~  132 (301)
T 1xky_A          110 AVMLVAPYYNKPSQEGMYQHFKA  132 (301)
T ss_dssp             EEEEECCCSSCCCHHHHHHHHHH
T ss_pred             EEEEcCCCCCCCCHHHHHHHHHH
Confidence            987 3322   244555555544

>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 2y70_A 2y6z_A* 1ml1_A 2wsr_A 3q37_A 2v2h_A 2v2d_A 1dkw_A ...

Probab=94.74  E-value=0.28  Score=43.48  Aligned_cols=42  Identities=24%  Similarity=0.385  Sum_probs=35.0

Q ss_pred             CCCEEEEccCCCCCHHHHHHHH-HcCCCEEEEccccccCCCHHHHHH
Q 037779          221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~-~~GadgV~VGsai~~~~dp~~~~~  266 (310)
                      .++|  +..|++ +++|+.+++ +.++||++||++-.+ +++...++
T Consensus       205 ~vrI--lYGGSV-~~~N~~~l~~~~diDG~LVGgAsL~-~~F~~ii~  247 (250)
T 2j27_A          205 ELRI--LYGGSV-NGKNARTLYQQRDVNGFLVGGASLK-PEFVDIIK  247 (250)
T ss_dssp             HCCE--EEESSC-CTTTHHHHHTSTTCCEEEESGGGGS-TTHHHHHH
T ss_pred             cccE--EEcCCC-CHHHHHHHHcCCCCCeeeeehHHHH-HHHHHHHH
Confidence            3688  579999 588999999 569999999999999 88765543

>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A*

Probab=94.67  E-value=0.015  Score=55.30  Aligned_cols=50  Identities=10%  Similarity=-0.064  Sum_probs=38.0

Q ss_pred             HHHHhcCCCCEEEEccCCCCCHHHHHHHHHc----CCCEEEEccccccCCCHHHHH
Q 037779          214 MQTKQLGRLPVVHFAAGGVATPADAAMMMQL----GCDGVFVGSGVFKSGDPVRRA  265 (310)
Q Consensus       214 ~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~----GadgV~VGsai~~~~dp~~~~  265 (310)
                      ..+++..++||  |++|||.+.+++.++++.    +||.|++|++++..+|....+
T Consensus       306 ~~ir~~~~~Pv--I~~Ggi~~~~dA~~~i~~~~~g~aDlVa~GR~~iaNPdL~~ri  359 (407)
T 3tjl_A          306 EFVSKIWKGVI--LKAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTSNPNLVWKL  359 (407)
T ss_dssp             HHHHHHCCSEE--EEESCGGGGTTTTHHHHHHHTTSSEEEECSHHHHHCTTHHHHH
T ss_pred             HHHHHHhCCCE--EecCCCCCHHHHHHHHHhhccCCCeEEEeChhhhhCchHHHHH
Confidence            34455456798  678999877767666654    599999999999999876554

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=94.66  E-value=0.21  Score=49.32  Aligned_cols=87  Identities=25%  Similarity=0.250  Sum_probs=62.3

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHH-cCCCeeeec--
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEA-IGVDYVDES--  121 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~-aGad~v~~~--  121 (310)
                      .+.++.+++.|++.|. +    +++. ..|...-.+.++++++++.+++||++...+.+.+++..+.+ .|++.++..  
T Consensus       455 ~e~a~~~~~~Ga~~il-~----t~~~-~dG~~~G~d~~li~~l~~~~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a  528 (555)
T 1jvn_A          455 WELTRACEALGAGEIL-L----NCID-KDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGM  528 (555)
T ss_dssp             HHHHHHHHHTTCCEEE-E----CCGG-GTTTCSCCCHHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHH
T ss_pred             HHHHHHHHHcCCCEEE-E----eCCC-CCCCCCCCCHHHHHHHHHhCCccEEEECCCCCHHHHHHHHHhcCChHHHHHHH
Confidence            5899999999999983 4    3331 22222224689999999999999999999988788877777 899998732  


Q ss_pred             ---CCCChhHHHHHHHhcC
Q 037779          122 ---EVLTPADEENHINKHN  137 (310)
Q Consensus       122 ---~~~~~~~~~~~~~~~~  137 (310)
                         ......++.+.++..+
T Consensus       529 ~~~~~~~~~e~~~~l~~~g  547 (555)
T 1jvn_A          529 FHRGEFTVNDVKEYLLEHG  547 (555)
T ss_dssp             HHTTSCCHHHHHHHHHHTT
T ss_pred             HHcCCCCHHHHHHHHHHCC
Confidence               2234555666555543

>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A

Probab=94.65  E-value=0.13  Score=45.65  Aligned_cols=39  Identities=21%  Similarity=0.386  Sum_probs=32.1

Q ss_pred             CCCEEEEccCCCCCHHHHHHHH-HcCCCEEEEccccccCCCHH
Q 037779          221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPV  262 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~-~~GadgV~VGsai~~~~dp~  262 (310)
                      .++|  +..|++ +++|+.+++ +.++||++||++-++++++.
T Consensus       204 ~vrI--lYGGSV-~~~N~~~l~~~~diDG~LVGgAsL~a~~F~  243 (252)
T 2btm_A          204 AIRI--QYGGSV-KPDNIRDFLAQQQIDGALVGGASLEPASFL  243 (252)
T ss_dssp             TSEE--EEESSC-CTTTHHHHHTSTTCCEEEESGGGSSHHHHH
T ss_pred             ceeE--EEcCCC-CHHHHHHHHcCCCCCeeEecHHHhChHHHH
Confidence            5777  679999 489999999 56999999999999854443

>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}

Probab=94.63  E-value=2.1  Score=38.72  Aligned_cols=82  Identities=15%  Similarity=0.161  Sum_probs=46.2

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGad  116 (310)
                      +.++.+.+.|++++..+.       ..+-+..+...   +.++.+.+.+  ++||++...-..    .+.++.+.++|||
T Consensus        41 ~lv~~li~~Gv~gl~v~G-------ttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~Gad  113 (304)
T 3cpr_A           41 EVAAYLVDKGLDSLVLAG-------TTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAGAD  113 (304)
T ss_dssp             HHHHHHHHTTCCEEEESS-------TTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHcCCCEEEECc-------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcCCC
Confidence            678889999999985441       01101112222   2344444443  589988754432    2455677789999


Q ss_pred             eee-ecCC---CChhHHHHHHH
Q 037779          117 YVD-ESEV---LTPADEENHIN  134 (310)
Q Consensus       117 ~v~-~~~~---~~~~~~~~~~~  134 (310)
                      +++ .+..   .+.+.+.+.++
T Consensus       114 avlv~~P~y~~~~~~~l~~~f~  135 (304)
T 3cpr_A          114 GLLVVTPYYSKPSQEGLLAHFG  135 (304)
T ss_dssp             EEEEECCCSSCCCHHHHHHHHH
T ss_pred             EEEECCCCCCCCCHHHHHHHHH
Confidence            987 3322   23445555444

>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5

Probab=94.63  E-value=1.8  Score=39.93  Aligned_cols=86  Identities=9%  Similarity=-0.013  Sum_probs=50.0

Q ss_pred             cccCCCHHHHHHHHHcCCcEE-EecccccchhhhcCCCCCCCChHHHHHHHhhcC---cceEeeccccchHHHHHHHHcC
Q 037779           39 IMDVVTPEQARIAEEAGACAV-MALERVPADIRAQGGVARMSDPQLIKQIKSSVT---IPVMAKARIGHFVEAQILEAIG  114 (310)
Q Consensus        39 i~~~~~~~~a~~~~~~Ga~~I-~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~---lPv~~kd~i~~~~~~~~~~~aG  114 (310)
                      .....+++.++.+...|++++ .+++..+.+...        -...++.+. ..+   .+++++..-.+..+++.+..+|
T Consensus        47 ~l~i~~p~~~e~a~~~GaD~vilDlEha~~~~e~--------~~~~l~a~~-~~~~~~~~~~VRv~~~~~~di~~~LdaG  117 (339)
T 1izc_A           47 AHGIPSTFVTKVLAATKPDFVWIDVEHGMFNRLE--------LHDAIHAAQ-HHSEGRSLVIVRVPKHDEVSLSTALDAG  117 (339)
T ss_dssp             EECSCCHHHHHHHHHTCCSEEEEETTTSCCCHHH--------HHHHHHHHH-HHTTTCSEEEEECCTTCHHHHHHHHHHT
T ss_pred             EEECCCHHHHHHHHhCCCCEEEEECCCCCCcHHH--------HHHHHHHhh-hcCCCCCeEEEEeCCCCHHHHHHHHhCC
Confidence            334567899999999999987 334311111110        012233332 123   6666653322335677788899


Q ss_pred             CCeeeecCCCChhHHHHHH
Q 037779          115 VDYVDESEVLTPADEENHI  133 (310)
Q Consensus       115 ad~v~~~~~~~~~~~~~~~  133 (310)
                      ++.|..+...++.++....
T Consensus       118 a~gImlP~V~saee~~~~~  136 (339)
T 1izc_A          118 AAGIVIPHVETVEEVREFV  136 (339)
T ss_dssp             CSEEEETTCCCHHHHHHHH
T ss_pred             CCEEEeCCCCCHHHHHHHH
Confidence            9998887776777665443

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1

Probab=94.58  E-value=0.061  Score=49.21  Aligned_cols=98  Identities=17%  Similarity=0.083  Sum_probs=62.6

Q ss_pred             ccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHH
Q 037779           28 VGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEA  107 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~  107 (310)
                      .|+..+++.|+-.. ...+.++.+.++|+++|.+-.+...+  .+.|   ..+.+.++++++  ++||+++..+.+.+++
T Consensus       127 ~pv~vKir~G~~~~-~~~~~a~~l~~~G~d~i~v~g~~~~~--~~~~---~~~~~~i~~i~~--~ipVi~~GgI~s~~da  198 (318)
T 1vhn_A          127 GKFSVKTRLGWEKN-EVEEIYRILVEEGVDEVFIHTRTVVQ--SFTG---RAEWKALSVLEK--RIPTFVSGDIFTPEDA  198 (318)
T ss_dssp             SEEEEEEESCSSSC-CHHHHHHHHHHTTCCEEEEESSCTTT--TTSS---CCCGGGGGGSCC--SSCEEEESSCCSHHHH
T ss_pred             CCEEEEecCCCChH-HHHHHHHHHHHhCCCEEEEcCCCccc--cCCC---CcCHHHHHHHHc--CCeEEEECCcCCHHHH
Confidence            46778888775321 12489999999999998543111111  1111   234567777777  8999999988777777


Q ss_pred             HHHHH-cCCCeee-ecCCCChhHHHHHH
Q 037779          108 QILEA-IGVDYVD-ESEVLTPADEENHI  133 (310)
Q Consensus       108 ~~~~~-aGad~v~-~~~~~~~~~~~~~~  133 (310)
                      +.+.+ .|||.|. ....+..+++...+
T Consensus       199 ~~~l~~~gad~V~iGR~~l~~P~l~~~~  226 (318)
T 1vhn_A          199 KRALEESGCDGLLVARGAIGRPWIFKQI  226 (318)
T ss_dssp             HHHHHHHCCSEEEESGGGTTCTTHHHHH
T ss_pred             HHHHHcCCCCEEEECHHHHhCcchHHHH
Confidence            76666 7999997 33333333444434

>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0

Probab=94.49  E-value=2.6  Score=37.90  Aligned_cols=83  Identities=20%  Similarity=0.262  Sum_probs=46.6

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGad  116 (310)
                      +.++.+.+.|++++..+-  .|     +-+..+...   +.++.+.+.+  ++||++...-..    .+.++.+.++|||
T Consensus        32 ~lv~~li~~Gv~gl~~~G--tt-----GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gad  104 (297)
T 3flu_A           32 DLIDWHIENGTDGIVAVG--TT-----GESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAGAD  104 (297)
T ss_dssp             HHHHHHHHTTCCEEEESS--TT-----TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHcCCCEEEeCc--cc-----cCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCC
Confidence            678889999999985441  01     001112222   2344444443  589998754332    2456677889999


Q ss_pred             eee-ecCC---CChhHHHHHHHh
Q 037779          117 YVD-ESEV---LTPADEENHINK  135 (310)
Q Consensus       117 ~v~-~~~~---~~~~~~~~~~~~  135 (310)
                      +++ .+..   .+.+.+.+.++.
T Consensus       105 avlv~~P~y~~~~~~~l~~~f~~  127 (297)
T 3flu_A          105 YTLSVVPYYNKPSQEGIYQHFKT  127 (297)
T ss_dssp             EEEEECCCSSCCCHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCHHHHHHHHHH
Confidence            987 4322   234445555443

>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A

Probab=94.48  E-value=2.4  Score=37.52  Aligned_cols=175  Identities=13%  Similarity=0.024  Sum_probs=96.5

Q ss_pred             ccCCCHHHHHHHHHcCCcEE-EecccccchhhhcCCCCCCCChHHHHHHH---hhcCcceEeeccccchHHHHHHHHcCC
Q 037779           40 MDVVTPEQARIAEEAGACAV-MALERVPADIRAQGGVARMSDPQLIKQIK---SSVTIPVMAKARIGHFVEAQILEAIGV  115 (310)
Q Consensus        40 ~~~~~~~~a~~~~~~Ga~~I-~~l~~~~~d~r~~~G~~~~~~~~~i~~i~---~~~~lPv~~kd~i~~~~~~~~~~~aGa  115 (310)
                      ....+++.++.+...|+|++ .+++..|.+            .+.++...   +..+.|++++..-.+...++.+..+|+
T Consensus        24 ~~~~~p~~~e~a~~~GaD~v~lDlE~~~~~------------~~~~~~~~~a~~~~~~~~~VRv~~~~~~~i~~~l~~g~   91 (267)
T 2vws_A           24 LSSTTAYMAEIAATSGYDWLLIDGEHAPNT------------IQDLYHQLQAVAPYASQPVIRPVEGSKPLIKQVLDIGA   91 (267)
T ss_dssp             ECSCCHHHHHHHHTTCCSEEEEETTTSCCC------------HHHHHHHHHHHTTSSSEEEEECSSCCHHHHHHHHHTTC
T ss_pred             EeCCCHHHHHHHHhCCCCEEEEcCCCCCCC------------HHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHhCC
Confidence            34567899999999999987 334211111            22222221   223567777644334456677788999


Q ss_pred             CeeeecCCCChhHHHHHHHh-cCC-----------------------------CCcEEeecCCHHHHHHHH---H-hCCC
Q 037779          116 DYVDESEVLTPADEENHINK-HNF-----------------------------RVPFVCGCRNLGESLRRI---R-EGAA  161 (310)
Q Consensus       116 d~v~~~~~~~~~~~~~~~~~-~~~-----------------------------~l~v~~~v~t~~ea~~a~---~-~Gad  161 (310)
                      +.|..+...+++++...... +.+                             .+.+++-+.|++-+..+.   . .|.|
T Consensus        92 ~~I~~P~V~s~ee~~~~~~~~~~~p~G~Rg~~~~~~~~~~~g~~~~y~~~~~~~~~v~~~IEt~~av~~~~eIa~~~gvd  171 (267)
T 2vws_A           92 QTLLIPMVDTAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGID  171 (267)
T ss_dssp             CEEEECCCCSHHHHHHHHHHTSCTTTSCCCSCGGGSGGGGGGTSTTHHHHHHHHCEEEEECCSHHHHHTHHHHHTSTTCC
T ss_pred             CEEEeCCCCCHHHHHHHHHHHcCCCCCccccccchhhhhhcCcchhhhhhcccccEEEEEECCHHHHHHHHHHhCCCCCC
Confidence            99988777677776655433 110                             145666677776443322   2 3677


Q ss_pred             EEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHH---hcCCCCEEEEccCCCCCHHHH
Q 037779          162 MIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTK---QLGRLPVVHFAAGGVATPADA  238 (310)
Q Consensus       162 ~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~---~~~~iPVv~ia~GGI~t~~di  238 (310)
                      .+.+. +         .+...+++.    ..+.. .+.         -...+.++.   +...+|+.+.  .  .+++.+
T Consensus       172 ~l~iG-~---------~DL~~~lg~----~~~~~-~p~---------v~~a~~~iv~aa~aaG~~~~v~--~--~d~~~a  223 (267)
T 2vws_A          172 GVFIG-P---------ADLSASLGY----PDNAG-HPE---------VQRIIETSIRRIRAAGKAAGFL--A--VAPDMA  223 (267)
T ss_dssp             EEEEC-H---------HHHHHHTTC----SSSCC-THH---------HHHHHHHHHHHHHHTTCEEEEE--C--SSHHHH
T ss_pred             EEEEC-h---------HHHHHHhCC----CCCCC-CHH---------HHHHHHHHHHHHHHhCCeEEEe--c--CCHHHH
Confidence            77764 1         011111110    00000 000         011222221   1235676533  2  379999


Q ss_pred             HHHHHcCCCEEEEccc
Q 037779          239 AMMMQLGCDGVFVGSG  254 (310)
Q Consensus       239 ~~~~~~GadgV~VGsa  254 (310)
                      ..+++.|++.+.+|+-
T Consensus       224 ~~~~~~G~~~~s~~~d  239 (267)
T 2vws_A          224 QQCLAWGANFVAVGVD  239 (267)
T ss_dssp             HHHHHTTCCEEEEEEH
T ss_pred             HHHHHCCCCEEEEchH
Confidence            9999999999999984

>1m3u_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; beta-alpha-barrel, TIM-barrel, ketopantoate, selenomethionin decamer; HET: KPL; 1.80A {Escherichia coli} SCOP: c.1.12.8

Probab=94.48  E-value=2.5  Score=37.61  Aligned_cols=98  Identities=8%  Similarity=0.037  Sum_probs=50.8

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhcCC--CCCCCChH----HHHHHHhhcCcceEeecc-cc---chHH----
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGG--VARMSDPQ----LIKQIKSSVTIPVMAKAR-IG---HFVE----  106 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G--~~~~~~~~----~i~~i~~~~~lPv~~kd~-i~---~~~~----  106 (310)
                      .+-|+-.|+.++++|++.|...-.  .-. ...|  +...-..+    ..+.|++.++.|+++-|. .+   +.++    
T Consensus        23 tayD~~sA~l~e~aG~d~ilvGds--l~~-~~lG~~dt~~vtldemi~h~~aV~r~~~~~~vvaD~pfgsy~~~~~a~~~   99 (264)
T 1m3u_A           23 TAYDYSFAKLFADEGLNVMLVGDS--LGM-TVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFEN   99 (264)
T ss_dssp             ECCSHHHHHHHHHHTCCEEEECTT--HHH-HTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSSSHHHHHHH
T ss_pred             eCcCHHHHHHHHHcCCCEEEECHH--HHH-HHcCCCCCCCcCHHHHHHHHHHHHhhCCCCcEEEECCCCCcCCHHHHHHH
Confidence            456788999999999999843200  000 0111  11111223    345677777766555442 22   2222    


Q ss_pred             HHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEE
Q 037779          107 AQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFV  143 (310)
Q Consensus       107 ~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~  143 (310)
                      +..+..+||+.|.+-+.....+.++.+...  +++++
T Consensus       100 a~rl~kaGa~aVklEgg~e~~~~I~al~~a--gipV~  134 (264)
T 1m3u_A          100 AATVMRAGANMVKIEGGEWLVETVQMLTER--AVPVC  134 (264)
T ss_dssp             HHHHHHTTCSEEECCCSGGGHHHHHHHHHT--TCCEE
T ss_pred             HHHHHHcCCCEEEECCcHHHHHHHHHHHHC--CCCeE
Confidence            235666999999743332233444444443  34443

>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} SCOP: c.1.1.1

Probab=94.45  E-value=0.17  Score=45.18  Aligned_cols=39  Identities=21%  Similarity=0.353  Sum_probs=31.6

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHH
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPV  262 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~dp~  262 (310)
                      .++|  +..|++ +++++.+++. .++||++||++-.+++++.
T Consensus       212 ~vrI--lYGGSV-~~~N~~~l~~~~diDG~LVGgAsL~a~~F~  251 (261)
T 1m6j_A          212 ATRI--QYGGSV-NPANCNELAKKADIDGFLVGGASLDAAKFK  251 (261)
T ss_dssp             HSCE--EECSCC-CTTTHHHHHTSTTCCEEEESGGGGSHHHHH
T ss_pred             cccE--EEcCCc-CHhhHHHHhcCCCCCeeEecHHHhChHHHH
Confidence            3688  679999 5899988885 5999999999999855443

>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}

Probab=94.39  E-value=2.9  Score=38.02  Aligned_cols=83  Identities=18%  Similarity=0.172  Sum_probs=46.8

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGad  116 (310)
                      +.++.+.+.|++++..+.       ..+-+..+...   +.++.+.+.+  ++||++...-..    .+.++.+.++|||
T Consensus        47 ~li~~li~~Gv~Gl~v~G-------tTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~Gad  119 (315)
T 3si9_A           47 NFVEWQITQGINGVSPVG-------TTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGAD  119 (315)
T ss_dssp             HHHHHHHHTTCSEEECSS-------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHcCCCEEEeCc-------cccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence            678889999999984431       00101112222   2344444443  589998754332    2455677889999


Q ss_pred             eee-ecCC---CChhHHHHHHHh
Q 037779          117 YVD-ESEV---LTPADEENHINK  135 (310)
Q Consensus       117 ~v~-~~~~---~~~~~~~~~~~~  135 (310)
                      +++ .+..   .+.+.+.+.++.
T Consensus       120 avlv~~P~y~~~~~~~l~~~f~~  142 (315)
T 3si9_A          120 AVLVVTPYYNRPNQRGLYTHFSS  142 (315)
T ss_dssp             EEEEECCCSSCCCHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCHHHHHHHHHH
Confidence            988 3322   234455555543

>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A

Probab=94.27  E-value=3.1  Score=37.83  Aligned_cols=83  Identities=18%  Similarity=0.211  Sum_probs=46.5

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGad  116 (310)
                      +.++.+.+.|++++..+.  .|.+     +..+...   +.++.+.+.+  ++||++...-..    .+.++.+.++|||
T Consensus        48 ~lv~~li~~Gv~Gl~v~G--tTGE-----~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~Gad  120 (314)
T 3qze_A           48 KLVDFHLQEGTNAIVAVG--TTGE-----SATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGGAD  120 (314)
T ss_dssp             HHHHHHHHHTCCEEEESS--GGGT-----GGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHcCCCEEEECc--cccC-----hhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcCCC
Confidence            678888999999985441  0100     0112122   2344444443  589998754432    2456677889999


Q ss_pred             eee-ecCC---CChhHHHHHHHh
Q 037779          117 YVD-ESEV---LTPADEENHINK  135 (310)
Q Consensus       117 ~v~-~~~~---~~~~~~~~~~~~  135 (310)
                      +++ .+..   .+.+.+.+.++.
T Consensus       121 avlv~~P~y~~~s~~~l~~~f~~  143 (314)
T 3qze_A          121 ACLLVTPYYNKPTQEGMYQHFRH  143 (314)
T ss_dssp             EEEEECCCSSCCCHHHHHHHHHH
T ss_pred             EEEEcCCCCCCCCHHHHHHHHHH
Confidence            988 3322   234455555543

>1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8

Probab=94.26  E-value=2  Score=38.54  Aligned_cols=92  Identities=14%  Similarity=0.086  Sum_probs=49.6

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCC--C----CCCChHHHHHHHhhcCcceEeeccc-cc----hHH---
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGV--A----RMSDPQLIKQIKSSVTIPVMAKARI-GH----FVE---  106 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~--~----~~~~~~~i~~i~~~~~lPv~~kd~i-~~----~~~---  106 (310)
                      .+-|+-.|+.++++|++.|...-..   .....|.  .    ...-....+.|++.++.|+++-|.- +.    .++   
T Consensus        40 tayDa~sA~l~e~aG~d~ilvGdSl---~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pfgsy~~s~~~a~~  116 (281)
T 1oy0_A           40 TAYDYSTARIFDEAGIPVLLVGDSA---ANVVYGYDTTVPISIDELIPLVRGVVRGAPHALVVADLPFGSYEAGPTAALA  116 (281)
T ss_dssp             ECCSHHHHHHHHTTTCCEEEECTTH---HHHTTCCSSSSSCCGGGTHHHHHHHHHHCTTSEEEEECCTTSSTTCHHHHHH
T ss_pred             eCcCHHHHHHHHHcCCCEEEECHHH---HHHHcCCCCCCCCCHHHHHHHHHHHHhcCCCCeEEEECCCCcccCCHHHHHH
Confidence            4567889999999999998432000   0000010  0    1111445677888888777765432 22    222   


Q ss_pred             --HHHHHHcCCCeeeecCCCChhHHHHHHHh
Q 037779          107 --AQILEAIGVDYVDESEVLTPADEENHINK  135 (310)
Q Consensus       107 --~~~~~~aGad~v~~~~~~~~~~~~~~~~~  135 (310)
                        .+.+.++||+.|.+-+.....+.++.+..
T Consensus       117 na~rl~~eaGa~aVklEdg~e~~~~I~al~~  147 (281)
T 1oy0_A          117 AATRFLKDGGAHAVKLEGGERVAEQIACLTA  147 (281)
T ss_dssp             HHHHHHHTTCCSEEEEEBSGGGHHHHHHHHH
T ss_pred             HHHHHHHHhCCeEEEECCcHHHHHHHHHHHH
Confidence              23444599999974333223344444444

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=94.22  E-value=0.18  Score=47.22  Aligned_cols=138  Identities=14%  Similarity=0.161  Sum_probs=73.5

Q ss_pred             hcCcceEeecccc--------chHHHHHHHHcCCCeeeec--CCCChhHHHHH-HHhcCCCCcEEeecC---CHHHHHHH
Q 037779           90 SVTIPVMAKARIG--------HFVEAQILEAIGVDYVDES--EVLTPADEENH-INKHNFRVPFVCGCR---NLGESLRR  155 (310)
Q Consensus        90 ~~~lPv~~kd~i~--------~~~~~~~~~~aGad~v~~~--~~~~~~~~~~~-~~~~~~~l~v~~~v~---t~~ea~~a  155 (310)
                      ....|+++.-.-+        ....++.+.++|+-....+  ..+..++...+ +.+..++.++++.+.   +.+++.++
T Consensus        84 ~l~~Pi~iapMtgg~~~~~~in~~lA~~a~~~G~~~~vGs~~~~le~~~~~~~~v~r~~P~~~~ianig~~~~~e~~~~~  163 (365)
T 3sr7_A           84 DFDFPFYINAMTGGSQKGKEVNEKLAQVADTCGLLFVTGSYSTALKNPDDTSYQVKKSRPHLLLATNIGLDKPYQAGLQA  163 (365)
T ss_dssp             EESSSEEEECC----CCCHHHHHHHHHHHHHHTCCEEC-----------------------CCEEEEEETTSCHHHHHHH
T ss_pred             EccCceEeccccCCCcchhHHHHHHHHHHHHcCCCeecccccccccCccccceEehhhCCCCcEEEEeCCCCCHHHHHHH
Confidence            3467988865432        1235677888999887732  11111111111 222224566655543   56677776


Q ss_pred             H-HhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCC--
Q 037779          156 I-REGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGV--  232 (310)
Q Consensus       156 ~-~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI--  232 (310)
                      . ..|+|.+.++-...    .+.            ..+.-+        +++..-.+.++.+++..++||++   .|+  
T Consensus       164 ve~~~adal~ihln~~----qe~------------~~p~Gd--------~~~~~~~~~I~~l~~~~~~PViv---K~vg~  216 (365)
T 3sr7_A          164 VRDLQPLFLQVHINLM----QEL------------LMPEGE--------REFRSWKKHLSDYAKKLQLPFIL---KEVGF  216 (365)
T ss_dssp             HHHHCCSCEEEEECHH----HHH------------TSSSSC--------CCCHHHHHHHHHHHHHCCSCEEE---EECSS
T ss_pred             HHhcCCCEEEEecccc----ccc------------cCCCCC--------CcHHHHHHHHHHHHHhhCCCEEE---EECCC
Confidence            6 67999988862200    000            000000        01111125677787777899963   345  


Q ss_pred             -CCHHHHHHHHHcCCCEEEEccc
Q 037779          233 -ATPADAAMMMQLGCDGVFVGSG  254 (310)
Q Consensus       233 -~t~~di~~~~~~GadgV~VGsa  254 (310)
                       .+++++..+.++|+|+|.|+..
T Consensus       217 g~s~e~A~~l~~aGad~I~V~g~  239 (365)
T 3sr7_A          217 GMDVKTIQTAIDLGVKTVDISGR  239 (365)
T ss_dssp             CCCHHHHHHHHHHTCCEEECCCB
T ss_pred             CCCHHHHHHHHHcCCCEEEEeCC
Confidence             5899999999999999999543

>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*

Probab=94.21  E-value=2.3  Score=37.99  Aligned_cols=93  Identities=13%  Similarity=0.121  Sum_probs=48.4

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhcC-CCCCCCChH----HHHHHHhhcCcceEeecc-ccc----hHH----
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQG-GVARMSDPQ----LIKQIKSSVTIPVMAKAR-IGH----FVE----  106 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~-G~~~~~~~~----~i~~i~~~~~lPv~~kd~-i~~----~~~----  106 (310)
                      .+-|+-.|+.++++|++.|..--..  -.-..+ -+...-.++    ..+.|++.++.|+++-|. ++.    .++    
T Consensus        23 tayDa~sA~l~e~aG~d~ilvGdSl--~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~vvaD~pfgsy~~s~~~a~~n  100 (275)
T 1o66_A           23 TAYESSFAALMDDAGVEMLLVGDSL--GMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAA  100 (275)
T ss_dssp             ECCSHHHHHHHHHTTCCEEEECTTH--HHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSSSSCHHHHHHH
T ss_pred             eCcCHHHHHHHHHcCCCEEEECHHH--HHHHcCCCCCCCCCHHHHHHHHHHHHhhCCCCeEEEECCCCCccCCHHHHHHH
Confidence            4567899999999999998432000  000001 111112233    345677777776655542 222    222    


Q ss_pred             HHHHHHcCCCeeeecCCCChhHHHHHHHh
Q 037779          107 AQILEAIGVDYVDESEVLTPADEENHINK  135 (310)
Q Consensus       107 ~~~~~~aGad~v~~~~~~~~~~~~~~~~~  135 (310)
                      +..+..+||+.|.+-+.....+.++.+..
T Consensus       101 a~rl~kaGa~aVklEdg~e~~~~I~al~~  129 (275)
T 1o66_A          101 AAELMAAGAHMVKLEGGVWMAETTEFLQM  129 (275)
T ss_dssp             HHHHHHTTCSEEEEECSGGGHHHHHHHHH
T ss_pred             HHHHHHcCCcEEEECCcHHHHHHHHHHHH
Confidence            23566699999974333223344444444

>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A 2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A*

Probab=94.17  E-value=0.5  Score=41.83  Aligned_cols=42  Identities=24%  Similarity=0.365  Sum_probs=34.2

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHHH
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~dp~~~~~  266 (310)
                      .++|  +..|++ +++++.+++. .++||++||++-++ +++...++
T Consensus       206 ~vrI--lYGGSV-~~~N~~~l~~~~diDG~LVGgAsL~-~~F~~Ii~  248 (251)
T 2vxn_A          206 KLRI--LYGGSV-NAANAATLYAKPDINGFLVGGASLK-PEFRDIID  248 (251)
T ss_dssp             HCEE--EEESSC-CTTTHHHHHTSTTCCEEEESGGGGS-TTHHHHHH
T ss_pred             cccE--EEcCCc-CHhHHHHHhcCCCCCeeeecHHHHH-HHHHHHHH
Confidence            3677  679999 5899988885 69999999999999 88765543

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=94.14  E-value=0.14  Score=47.37  Aligned_cols=90  Identities=17%  Similarity=-0.006  Sum_probs=59.5

Q ss_pred             ccceeeecCCcccc----CCC-HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc
Q 037779           28 VGLAQMLRGGVIMD----VVT-PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG  102 (310)
Q Consensus        28 ~~~~~~l~~g~i~~----~~~-~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~  102 (310)
                      .++..+|+..+..+    ..+ .++++.++++|++.|+..+....+.....+.  ..+.+.++++++.+++||+....+.
T Consensus       210 ~pv~vRls~~~~~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~--~~~~~~~~~ik~~~~iPVi~~GgI~  287 (340)
T 3gr7_A          210 GPLFVRISASDYHPDGLTAKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYP--GYQVPFAELIRREADIPTGAVGLIT  287 (340)
T ss_dssp             SCEEEEEESCCCSTTSCCGGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCT--TTTHHHHHHHHHHTTCCEEEESSCC
T ss_pred             CceEEEeccccccCCCCCHHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCc--cccHHHHHHHHHHcCCcEEeeCCCC
Confidence            35666776543221    122 4789999999999985542100000000000  1146788999999999999998887


Q ss_pred             chHHHHHHHHcC-CCeee
Q 037779          103 HFVEAQILEAIG-VDYVD  119 (310)
Q Consensus       103 ~~~~~~~~~~aG-ad~v~  119 (310)
                      +.+.++.+.+.| ||.|.
T Consensus       288 s~e~a~~~L~~G~aD~V~  305 (340)
T 3gr7_A          288 SGWQAEEILQNGRADLVF  305 (340)
T ss_dssp             CHHHHHHHHHTTSCSEEE
T ss_pred             CHHHHHHHHHCCCeeEEE
Confidence            778888888888 99987

>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A

Probab=94.10  E-value=2.7  Score=37.92  Aligned_cols=82  Identities=13%  Similarity=0.112  Sum_probs=45.9

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGad  116 (310)
                      +.++.+.+.|+++|..+.  .|     +-+..+...   +.++.+.+.+  ++||++...-..    .+.++.+.++|||
T Consensus        36 ~lv~~li~~Gv~Gl~v~G--tT-----GE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gad  108 (303)
T 2wkj_A           36 RLVQFNIQQGIDGLYVGG--ST-----GEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFD  108 (303)
T ss_dssp             HHHHHHHHTTCSEEEESS--TT-----TTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHcCCCEEEECe--ec-----cChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhCCCC
Confidence            678888999999985441  00     001112222   2344444443  589988754422    2455677789999


Q ss_pred             eee-ecCC---CChhHHHHHHH
Q 037779          117 YVD-ESEV---LTPADEENHIN  134 (310)
Q Consensus       117 ~v~-~~~~---~~~~~~~~~~~  134 (310)
                      +++ .+..   .+.+.+.+.++
T Consensus       109 avlv~~P~y~~~s~~~l~~~f~  130 (303)
T 2wkj_A          109 AVSAVTPFYYPFSFEEHCDHYR  130 (303)
T ss_dssp             EEEEECCCSSCCCHHHHHHHHH
T ss_pred             EEEecCCCCCCCCHHHHHHHHH
Confidence            987 3322   24445555443

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=94.08  E-value=0.41  Score=44.65  Aligned_cols=117  Identities=15%  Similarity=0.128  Sum_probs=71.6

Q ss_pred             HHHHHHHHcCCcEEEeccc----------ccc---hhhhcCCCCCCC----ChHHHHHHHhhcC-cceEeecccc-----
Q 037779           46 EQARIAEEAGACAVMALER----------VPA---DIRAQGGVARMS----DPQLIKQIKSSVT-IPVMAKARIG-----  102 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~----------~~~---d~r~~~G~~~~~----~~~~i~~i~~~~~-lPv~~kd~i~-----  102 (310)
                      +.|+.+.++|+++| .+|.          .|.   -...++|+. .+    ..+.++++|+.++ -||.+|....     
T Consensus       165 ~aA~~a~~aGfDgV-eih~a~GyLl~qFlsp~~N~R~D~yGGsl-enr~r~~~eiv~avr~~vg~~~v~vrls~~~~~~~  242 (364)
T 1vyr_A          165 QAVANAREAGFDLV-ELHSAHGYLLHQFLSPSSNQRTDQYGGSV-ENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQN  242 (364)
T ss_dssp             HHHHHHHHTTCSEE-EEEECTTSHHHHHHCTTTCCCCSTTSSSH-HHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTT
T ss_pred             HHHHHHHHcCCCEE-EEcCccchHHHhccCCcccccCCcCCcch-hcChhhHHHHHHHHHHhcCCCcEEEEEcccccccc
Confidence            55778899999998 5541          121   011244541 11    1334677888773 2888853332     


Q ss_pred             ------ch----HHHHHHHHcCCCeeeecCC------CChhHHHHHHHhcCCCCcEEe--ecCCHHHHHHHHHhC-CCEE
Q 037779          103 ------HF----VEAQILEAIGVDYVDESEV------LTPADEENHINKHNFRVPFVC--GCRNLGESLRRIREG-AAMI  163 (310)
Q Consensus       103 ------~~----~~~~~~~~aGad~v~~~~~------~~~~~~~~~~~~~~~~l~v~~--~v~t~~ea~~a~~~G-ad~I  163 (310)
                            +.    ..++.+.++|+|++..+..      ..+.++.+.+++. ..+++++  ++ |.++++.+++.| +|+|
T Consensus       243 ~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~v~~~-~~iPvi~~Ggi-t~~~a~~~l~~g~aD~V  320 (364)
T 1vyr_A          243 VDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRER-FHGVIIGAGAY-TAEKAEDLIGKGLIDAV  320 (364)
T ss_dssp             BCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHH-CCSEEEEESSC-CHHHHHHHHHTTSCSEE
T ss_pred             ccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcccCCCcccHHHHHHHHHH-CCCCEEEECCc-CHHHHHHHHHCCCccEE
Confidence                  11    2356778899999984421      1133455556553 3456555  36 899999999887 8999


Q ss_pred             EEe
Q 037779          164 RTK  166 (310)
Q Consensus       164 ~v~  166 (310)
                      .+.
T Consensus       321 ~~g  323 (364)
T 1vyr_A          321 AFG  323 (364)
T ss_dssp             EES
T ss_pred             EEC
Confidence            985

>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*

Probab=94.00  E-value=0.88  Score=42.79  Aligned_cols=175  Identities=13%  Similarity=0.121  Sum_probs=96.1

Q ss_pred             HHHHHHHHcCCcEEEecc-ccc-chhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-C
Q 037779           46 EQARIAEEAGACAVMALE-RVP-ADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-E  122 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~-~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~  122 (310)
                      ++++.+.++|++.+ ... ..| |.+..|.|-. ......++++++..++|++.-.+-  ...++.+.+. +|.+-+. .
T Consensus       160 ~~a~~~k~aGa~~v-k~q~fkprts~~~f~gl~-~egl~~L~~~~~~~Gl~~~te~~d--~~~~~~l~~~-vd~lkIgs~  234 (385)
T 3nvt_A          160 AVAESIKAKGLKLI-RGGAFKPRTSPYDFQGLG-LEGLKILKRVSDEYGLGVISEIVT--PADIEVALDY-VDVIQIGAR  234 (385)
T ss_dssp             HHHHHHHHTTCCEE-ECBSSCCCSSTTSCCCCT-HHHHHHHHHHHHHHTCEEEEECCS--GGGHHHHTTT-CSEEEECGG
T ss_pred             HHHHHHHHcCCCeE-EcccccCCCChHhhcCCC-HHHHHHHHHHHHHcCCEEEEecCC--HHHHHHHHhh-CCEEEECcc
Confidence            67899999999987 222 111 1111232221 122345666777789999775432  2455556666 8887644 3


Q ss_pred             CCChhHHHHHHHhcCCCCcEEeec---CCHHHHHHHHH----hCC-CEEEEe-cCCCCCchHHHHHHHHHhhcceecccc
Q 037779          123 VLTPADEENHINKHNFRVPFVCGC---RNLGESLRRIR----EGA-AMIRTK-GEAGTGNIVEAVRHVRSVMGDIRVLRN  193 (310)
Q Consensus       123 ~~~~~~~~~~~~~~~~~l~v~~~v---~t~~ea~~a~~----~Ga-d~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~l~~  193 (310)
                      ......+.+.+.+  .+.+++++.   .|++|...+++    .|. +++-.+ |..                    .+++
T Consensus       235 ~~~n~~LL~~~a~--~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~~rG~s--------------------~yp~  292 (385)
T 3nvt_A          235 NMQNFELLKAAGR--VDKPILLKRGLSATIEEFIGAAEYIMSQGNGKIILCERGIR--------------------TYEK  292 (385)
T ss_dssp             GTTCHHHHHHHHT--SSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBC--------------------CSCC
T ss_pred             cccCHHHHHHHHc--cCCcEEEecCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCC--------------------CCCC
Confidence            3345566666654  467777763   67888766653    465 455444 221                    1111


Q ss_pred             cCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHH----HHHHHHHcCCCEEEEccccc
Q 037779          194 MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPA----DAAMMMQLGCDGVFVGSGVF  256 (310)
Q Consensus       194 ~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~----di~~~~~~GadgV~VGsai~  256 (310)
                      ...         ...+...+..+++..++||+.-.+=|++..+    -...+..+||+|+++=.-+.
T Consensus       293 ~~~---------~~ldl~~i~~lk~~~~lpV~~D~th~~G~r~~v~~~a~AAvA~GA~gl~iE~H~~  350 (385)
T 3nvt_A          293 ATR---------NTLDISAVPILKKETHLPVMVDVTHSTGRKDLLLPCAKAALAIEADGVMAEVHPD  350 (385)
T ss_dssp             SSS---------SBCCTTHHHHHHHHBSSCEEEEHHHHHCCGGGHHHHHHHHHHTTCSEEEEEBCSC
T ss_pred             CCc---------cccCHHHHHHHHHhcCCCEEEcCCCCCCccchHHHHHHHHHHhCCCEEEEEecCC
Confidence            111         0123444566666567898432222222222    24456789999999987444

>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}

Probab=93.98  E-value=0.42  Score=43.13  Aligned_cols=27  Identities=15%  Similarity=0.106  Sum_probs=22.3

Q ss_pred             CcEEeecCCHHHHHHHHHhCCCEEEEe
Q 037779          140 VPFVCGCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       140 l~v~~~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                      +.+=+.+.|.+++..|.+.|||-|=..
T Consensus        40 ~~lEvc~~s~~~a~~A~~gGAdRIELc   66 (287)
T 3iwp_A           40 FLMEVCVDSVESAVNAERGGADRIELC   66 (287)
T ss_dssp             SEEEEEESSHHHHHHHHHHTCSEEEEC
T ss_pred             ceEEEEeCCHHHHHHHHHhCCCEEEEC
Confidence            555667789999999999999988664

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*

Probab=93.94  E-value=0.66  Score=43.23  Aligned_cols=118  Identities=19%  Similarity=0.220  Sum_probs=71.7

Q ss_pred             HHHHHHHHcCCcEEEeccc-c---------cc---hhhhcCCCC--CC-CChHHHHHHHhhcCc-ceEeecccc------
Q 037779           46 EQARIAEEAGACAVMALER-V---------PA---DIRAQGGVA--RM-SDPQLIKQIKSSVTI-PVMAKARIG------  102 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~-~---------~~---d~r~~~G~~--~~-~~~~~i~~i~~~~~l-Pv~~kd~i~------  102 (310)
                      +.|+.+.++|+++| .+|. +         |.   -...++|+.  +. -..+.++++|+.++- ||.+|....      
T Consensus       165 ~aA~~a~~aGfDgV-eih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~~~~~  243 (365)
T 2gou_A          165 QAALNAMEAGFDGI-ELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLNGT  243 (365)
T ss_dssp             HHHHHHHHTTCSEE-EEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCTTSC
T ss_pred             HHHHHHHHcCCCEE-EEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEccccccCCC
Confidence            45777899999998 5541 0         11   011244541  00 012446778877632 888864331      


Q ss_pred             ----ch----HHHHHHHHcCCCeeeecCC------CChhHHHHHHHhcCCCCcEEe--ecCCHHHHHHHHHhC-CCEEEE
Q 037779          103 ----HF----VEAQILEAIGVDYVDESEV------LTPADEENHINKHNFRVPFVC--GCRNLGESLRRIREG-AAMIRT  165 (310)
Q Consensus       103 ----~~----~~~~~~~~aGad~v~~~~~------~~~~~~~~~~~~~~~~l~v~~--~v~t~~ea~~a~~~G-ad~I~v  165 (310)
                          ..    ..++.+.++|+|+++.+..      ..+.++.+.+++. .++++++  ++ |.++++.+++.| ||.|.+
T Consensus       244 ~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~i~~~-~~iPvi~~Ggi-~~~~a~~~l~~g~aD~V~i  321 (365)
T 2gou_A          244 VDADPILTYTAAAALLNKHRIVYLHIAEVDWDDAPDTPVSFKRALREA-YQGVLIYAGRY-NAEKAEQAINDGLADMIGF  321 (365)
T ss_dssp             CCSSHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHH-CCSEEEEESSC-CHHHHHHHHHTTSCSEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcCCCCCccHHHHHHHHHH-CCCcEEEeCCC-CHHHHHHHHHCCCcceehh
Confidence                11    2356778899999984422      1123555666653 3455555  36 899999999988 999998


Q ss_pred             e
Q 037779          166 K  166 (310)
Q Consensus       166 ~  166 (310)
                      .
T Consensus       322 g  322 (365)
T 2gou_A          322 G  322 (365)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}

Probab=93.86  E-value=3.8  Score=37.48  Aligned_cols=83  Identities=18%  Similarity=0.103  Sum_probs=46.6

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGad  116 (310)
                      +.++.+.+.|+++|..+.       ..+-+..+...   +.++.+.+.+  .+||++...-..    .+.++.+.++|||
T Consensus        59 ~lv~~li~~Gv~Gl~v~G-------tTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gad  131 (332)
T 2r8w_A           59 ALIARLDAAEVDSVGILG-------STGIYMYLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAGAD  131 (332)
T ss_dssp             HHHHHHHHHTCSEEEESS-------TTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHcCCCEEEECc-------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCC
Confidence            678888999999985441       00001112222   2344444443  589998754432    2455677789999


Q ss_pred             eee-ecCC---CChhHHHHHHHh
Q 037779          117 YVD-ESEV---LTPADEENHINK  135 (310)
Q Consensus       117 ~v~-~~~~---~~~~~~~~~~~~  135 (310)
                      +++ .+..   .+...+.+.++.
T Consensus       132 avlv~~P~Y~~~s~~~l~~~f~~  154 (332)
T 2r8w_A          132 ALLLAPVSYTPLTQEEAYHHFAA  154 (332)
T ss_dssp             EEEECCCCSSCCCHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCHHHHHHHHHH
Confidence            998 3322   244455555543

>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6

Probab=93.83  E-value=1.1  Score=42.20  Aligned_cols=92  Identities=11%  Similarity=0.104  Sum_probs=61.5

Q ss_pred             CCCCCCChHHHHHHHhhcCcceEeeccccchHHH----HHHHHcCC-Ceee---ecCCCChh-----HHHHHHHhcCCCC
Q 037779           74 GVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEA----QILEAIGV-DYVD---ESEVLTPA-----DEENHINKHNFRV  140 (310)
Q Consensus        74 G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~----~~~~~aGa-d~v~---~~~~~~~~-----~~~~~~~~~~~~l  140 (310)
                      ||..+.|+.+|+.+.+ ++.||+++.+..+.+++    +.+.+.|. +.++   .+...++.     ..+..+++..+++
T Consensus       141 gS~~~~N~pLL~~va~-~gKPViLStGmaTl~Ei~~Ave~i~~~Gn~~iiLlhc~s~YPtp~~~~nL~aI~~Lk~~f~~l  219 (385)
T 1vli_A          141 ASYEINHLPLLKYVAR-LNRPMIFSTAGAEISDVHEAWRTIRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPMLAAAFPEA  219 (385)
T ss_dssp             CGGGTTCHHHHHHHHT-TCSCEEEECTTCCHHHHHHHHHHHHTTTCCCEEEEEECSSSSCCGGGCCTTHHHHHHHHSTTS
T ss_pred             CcccccCHHHHHHHHh-cCCeEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEeccCCCCCChhhcCHHHHHHHHHHcCCC
Confidence            5666889999999885 69999999877654443    34445787 5555   22222222     2345555543378


Q ss_pred             cEEeecCC---HHHHHHHHHhCCCEEEEe
Q 037779          141 PFVCGCRN---LGESLRRIREGAAMIRTK  166 (310)
Q Consensus       141 ~v~~~v~t---~~ea~~a~~~Gad~I~v~  166 (310)
                      +++.+-|+   ..-+..|..+||++|=.+
T Consensus       220 pVG~SdHt~G~~~~~~AAvAlGA~iIEkH  248 (385)
T 1vli_A          220 VIGFSDHSEHPTEAPCAAVRLGAKLIEKH  248 (385)
T ss_dssp             EEEEEECCSSSSHHHHHHHHTTCSEEEEE
T ss_pred             CEEeCCCCCCchHHHHHHHHcCCCEEEeC
Confidence            88888777   556677889999988665

>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}

Probab=93.68  E-value=4  Score=37.07  Aligned_cols=83  Identities=20%  Similarity=0.230  Sum_probs=46.9

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGad  116 (310)
                      +.++.+.+.|++++..+-  .|.+     ...+...   +.++.+.+.+  ++||++...-..    .+.++.+.++|||
T Consensus        49 ~lv~~li~~Gv~Gi~v~G--tTGE-----~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gad  121 (315)
T 3na8_A           49 RSIERLIDGGVHAIAPLG--STGE-----GAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAE  121 (315)
T ss_dssp             HHHHHHHHTTCSEEECSS--GGGT-----GGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHcCCCEEEECc--cccC-----hhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCC
Confidence            678889999999984431  0100     0112112   2344444443  589998754332    2455677889999


Q ss_pred             eee-ecCC---CChhHHHHHHHh
Q 037779          117 YVD-ESEV---LTPADEENHINK  135 (310)
Q Consensus       117 ~v~-~~~~---~~~~~~~~~~~~  135 (310)
                      +++ .+..   .+.+++.+.++.
T Consensus       122 avlv~~P~y~~~s~~~l~~~f~~  144 (315)
T 3na8_A          122 AVMVLPISYWKLNEAEVFQHYRA  144 (315)
T ss_dssp             EEEECCCCSSCCCHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCHHHHHHHHHH
Confidence            998 3322   244555555543

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=93.63  E-value=0.31  Score=47.46  Aligned_cols=112  Identities=20%  Similarity=0.107  Sum_probs=72.6

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-C-cceEeeccccchHHHHHHHHcCCCeeeecC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-T-IPVMAKARIGHFVEAQILEAIGVDYVDESE  122 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~-lPv~~kd~i~~~~~~~~~~~aGad~v~~~~  122 (310)
                      .+.++.+.++|++.+..-      ..  .|.. ....+.++.+++.. + +|++++... +.+.++.+.++|+|.+....
T Consensus       244 ~e~~~~l~e~gv~~l~Vd------~~--~g~~-~~~~~~i~~lk~~~~~~~~Vi~G~V~-t~~~a~~l~~aGad~I~Vg~  313 (503)
T 1me8_A          244 RERVPALVEAGADVLCID------SS--DGFS-EWQKITIGWIREKYGDKVKVGAGNIV-DGEGFRYLADAGADFIKIGI  313 (503)
T ss_dssp             HHHHHHHHHHTCSEEEEC------CS--CCCS-HHHHHHHHHHHHHHGGGSCEEEEEEC-SHHHHHHHHHHTCSEEEECS
T ss_pred             HHHHHHHHhhhccceEEe------cc--cCcc-cchhhHHHHHHHhCCCCceEeecccc-CHHHHHHHHHhCCCeEEecc
Confidence            467889999999987331      11  1110 00156677788776 5 888876544 34678889999999985211


Q ss_pred             -C-------------CChh----HHHHHHHh----cCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779          123 -V-------------LTPA----DEENHINK----HNFRVPFVC--GCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       123 -~-------------~~~~----~~~~~~~~----~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                       .             .+..    ++.+.+..    ++.++++++  ++.+..++.+|+.+||+.|.+.
T Consensus       314 ~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAlalGA~~V~iG  381 (503)
T 1me8_A          314 GGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLG  381 (503)
T ss_dssp             SCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred             cCCcCcccccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence             0             1111    22222221    122588999  7999999999999999999885

>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*

Probab=93.63  E-value=3.8  Score=36.66  Aligned_cols=84  Identities=20%  Similarity=0.215  Sum_probs=47.0

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGV  115 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGa  115 (310)
                      .+.++.+.+.|++++..+.  .|.+     +..+...   +.++.+.+.+  ++||++...-..    .+.++.+.++||
T Consensus        25 ~~lv~~li~~Gv~gl~~~G--ttGE-----~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~Ga   97 (291)
T 3a5f_A           25 SELIEWHIKSKTDAIIVCG--TTGE-----ATTMTETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIGV   97 (291)
T ss_dssp             HHHHHHHHHTTCCEEEESS--GGGT-----GGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCEEEECc--cccC-----hhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHhcCC
Confidence            3678889999999985441  0100     1112222   2344444443  589988754432    245567788999


Q ss_pred             Ceee-ecCC---CChhHHHHHHHh
Q 037779          116 DYVD-ESEV---LTPADEENHINK  135 (310)
Q Consensus       116 d~v~-~~~~---~~~~~~~~~~~~  135 (310)
                      |+++ .+..   .+.+.+.+.++.
T Consensus        98 davlv~~P~y~~~s~~~l~~~f~~  121 (291)
T 3a5f_A           98 DGLLVITPYYNKTTQKGLVKHFKA  121 (291)
T ss_dssp             SEEEEECCCSSCCCHHHHHHHC-C
T ss_pred             CEEEEcCCCCCCCCHHHHHHHHHH
Confidence            9987 3322   244555555543

>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}

Probab=93.61  E-value=2.4  Score=37.87  Aligned_cols=175  Identities=17%  Similarity=0.189  Sum_probs=98.0

Q ss_pred             HHHHHHHHcCCcEEE-ecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-CC
Q 037779           46 EQARIAEEAGACAVM-ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-EV  123 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~-~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~~  123 (310)
                      ++++.+.++|++.+- +.....|.+..|.|.. ...+..+++.++..++|++.--+  +...++.+.+. +|.+-+. ..
T Consensus        56 ~~a~~~k~~ga~~~k~~~~kprts~~~f~g~g-~~gl~~l~~~~~~~Gl~~~te~~--d~~~~~~l~~~-vd~~kIgs~~  131 (276)
T 1vs1_A           56 EAALAVKEAGAHMLRGGAFKPRTSPYSFQGLG-LEGLKLLRRAGDEAGLPVVTEVL--DPRHVETVSRY-ADMLQIGARN  131 (276)
T ss_dssp             HHHHHHHHHTCSEEECBSSCCCSSTTSCCCCT-HHHHHHHHHHHHHHTCCEEEECC--CGGGHHHHHHH-CSEEEECGGG
T ss_pred             HHHHHHHHhCCCEEEeEEEeCCCChhhhcCCC-HHHHHHHHHHHHHcCCcEEEecC--CHHHHHHHHHh-CCeEEECccc
Confidence            678999999999862 1111111111232221 12244566777778999976533  22456667777 8888744 33


Q ss_pred             CChhHHHHHHHhcCCCCcEEee--cC-CHHHHHHHHH----hCC-CEEEEe-cC-CCCCchHHHHHHHHHhhcceecccc
Q 037779          124 LTPADEENHINKHNFRVPFVCG--CR-NLGESLRRIR----EGA-AMIRTK-GE-AGTGNIVEAVRHVRSVMGDIRVLRN  193 (310)
Q Consensus       124 ~~~~~~~~~~~~~~~~l~v~~~--v~-t~~ea~~a~~----~Ga-d~I~v~-g~-~~~~~~~~~~~~~~~~~~~~~~l~~  193 (310)
                      .....+.+.+.+  .+.+++++  .. |++|...+++    .|. +++-.+ |. .|.+                     
T Consensus       132 ~~n~~ll~~~a~--~~kPV~lk~G~~~t~~ei~~Ave~i~~~Gn~~i~L~~Rg~~~yp~---------------------  188 (276)
T 1vs1_A          132 MQNFPLLREVGR--SGKPVLLKRGFGNTVEELLAAAEYILLEGNWQVVLVERGIRTFEP---------------------  188 (276)
T ss_dssp             TTCHHHHHHHHH--HTCCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCC---------------------
T ss_pred             ccCHHHHHHHHc--cCCeEEEcCCCCCCHHHHHHHHHHHHHcCCCeEEEEeCCcCCCCC---------------------
Confidence            445556666655  35677665  43 6687776654    465 566555 32 1211                     


Q ss_pred             cCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEcc--CCCCC--HHHHHHHHHcCCCEEEEccccc
Q 037779          194 MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAA--GGVAT--PADAAMMMQLGCDGVFVGSGVF  256 (310)
Q Consensus       194 ~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~--GGI~t--~~di~~~~~~GadgV~VGsai~  256 (310)
                      -+         ....+...+..+++..++||+..++  +|...  ..-......+||+|+++=+-+.
T Consensus       189 y~---------~~~vdl~~i~~lk~~~~lpVi~dssH~~g~~~~~~~~~~aAva~Ga~Gl~IE~H~~  246 (276)
T 1vs1_A          189 ST---------RFTLDVAAVAVLKEATHLPVIVDPSHPAGRRSLVPALAKAGLAAGADGLIVEVHPN  246 (276)
T ss_dssp             SS---------SSBCBHHHHHHHHHHBSSCEEECCHHHHCSGGGHHHHHHHHHHTTCSEEEEEBCSS
T ss_pred             cC---------cchhCHHHHHHHHHHhCCCEEEeCCCCCCccchHHHHHHHHHHcCCCEEEEEecCC
Confidence            00         0122455566677655789842222  14221  2334455678999999998874

>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0

Probab=93.49  E-value=3.8  Score=36.19  Aligned_cols=87  Identities=17%  Similarity=0.164  Sum_probs=50.9

Q ss_pred             ccccC-CCHHHHHHHHHcCCcEE-Eecc-cccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcC
Q 037779           38 VIMDV-VTPEQARIAEEAGACAV-MALE-RVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIG  114 (310)
Q Consensus        38 ~i~~~-~~~~~a~~~~~~Ga~~I-~~l~-~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aG  114 (310)
                      ..... .+|+.++.+...|+|++ .+++ .++...+         -...++.+. ..+.+++++.--.+...++.+.++|
T Consensus        19 ~~~~~~~~p~~~e~a~~~g~D~vilDlEhav~~~~k---------~~~~l~a~~-~~~~~~~VRVn~~~~~di~~~ld~G   88 (261)
T 3qz6_A           19 TMLNLVYNPDIVRIYAEAGLDYFIVDCEHAAYTFRE---------INHLVSVAK-NAGVSVLVRIPQVDRAHVQRLLDIG   88 (261)
T ss_dssp             EEESSCCCTTHHHHHHHTTCSEEEEESSSSCCCHHH---------HHHHHHHHH-HHTCEEEEECSSCCHHHHHHHHHHT
T ss_pred             EEEecCCCHHHHHHHhcCCcCEEEEeccCCCCCHHH---------HHHHHHHHh-hcCCeEEEEeCCCCHHHHHHHHhcC
Confidence            33444 67899999999999997 3453 1111110         012232222 2355555543222334677778899


Q ss_pred             CCeeeecCCCChhHHHHHHH
Q 037779          115 VDYVDESEVLTPADEENHIN  134 (310)
Q Consensus       115 ad~v~~~~~~~~~~~~~~~~  134 (310)
                      ++.|..+...+++++.....
T Consensus        89 ~~gI~lP~v~saed~~~~~~  108 (261)
T 3qz6_A           89 AEGFMIPGVQSAETMRETVR  108 (261)
T ss_dssp             CCEEEETTCCSHHHHHHHHH
T ss_pred             CCEEEECCcCCHHHHHHHHH
Confidence            99999887767776655443

>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A

Probab=93.48  E-value=1.2  Score=41.23  Aligned_cols=92  Identities=17%  Similarity=0.221  Sum_probs=61.6

Q ss_pred             CCCCCCChHHHHHHHhhcCcceEeeccccchHHH----HHHHHcCCCeee---ecCCCChh-----HHHHHHHhcCCCCc
Q 037779           74 GVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEA----QILEAIGVDYVD---ESEVLTPA-----DEENHINKHNFRVP  141 (310)
Q Consensus        74 G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~----~~~~~aGad~v~---~~~~~~~~-----~~~~~~~~~~~~l~  141 (310)
                      ||..+.|+.+|+++.+ ++.||+++.+..+.+++    +.+.+.|.+.++   .+...++.     ..+..+++..++++
T Consensus       131 ~S~~~~n~~LL~~va~-~gkPviLstGmat~~Ei~~Ave~i~~~G~~iiLlhc~s~Yp~~~~~~nL~ai~~lk~~f~~lp  209 (349)
T 2wqp_A          131 GSGECNNYPLIKLVAS-FGKPIILSTGMNSIESIKKSVEIIREAGVPYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDAI  209 (349)
T ss_dssp             CGGGTTCHHHHHHHHT-TCSCEEEECTTCCHHHHHHHHHHHHHHTCCEEEEECCCCSSCCGGGCCTHHHHHHHHHCTTSE
T ss_pred             CcccccCHHHHHHHHh-cCCeEEEECCCCCHHHHHHHHHHHHHcCCCEEEEeccCCCCCChhhcCHHHHHHHHHHCCCCC
Confidence            5666889999999885 69999999877654333    444557888776   22222222     33455555433788


Q ss_pred             EEeecCCH--HHHHHHHHhCCCEEEEe
Q 037779          142 FVCGCRNL--GESLRRIREGAAMIRTK  166 (310)
Q Consensus       142 v~~~v~t~--~ea~~a~~~Gad~I~v~  166 (310)
                      ++.+-|+.  .-+..|..+||++|=.|
T Consensus       210 Vg~sdHt~G~~~~~AAvAlGA~iIEkH  236 (349)
T 2wqp_A          210 IGLSDHTLDNYACLGAVALGGSILERH  236 (349)
T ss_dssp             EEEECCSSSSHHHHHHHHHTCCEEEEE
T ss_pred             EEeCCCCCcHHHHHHHHHhCCCEEEeC
Confidence            88877773  35567779999988766

>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}

Probab=93.45  E-value=1.7  Score=40.36  Aligned_cols=92  Identities=15%  Similarity=0.161  Sum_probs=61.2

Q ss_pred             CCCCCCChHHHHHHHhhcCcceEeeccccchHHHH----HHHHcCCCeee--e-cCCCChh-----HHHHHHHhcCCCCc
Q 037779           74 GVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQ----ILEAIGVDYVD--E-SEVLTPA-----DEENHINKHNFRVP  141 (310)
Q Consensus        74 G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~----~~~~aGad~v~--~-~~~~~~~-----~~~~~~~~~~~~l~  141 (310)
                      ||..+.|+.+|+.+.+ ++.||+++.+..+.++++    .+.+.|.+.++  . +...++.     ..+..+++..++++
T Consensus       118 ~S~~~~N~pLL~~va~-~gKPviLstGmstl~Ei~~Ave~i~~~g~~viLlhC~s~YPt~~~~~nL~aI~~Lk~~fp~lp  196 (350)
T 3g8r_A          118 ASCSFTDWPLLERIAR-SDKPVVASTAGARREDIDKVVSFMLHRGKDLTIMHCVAEYPTPDDHLHLARIKTLRQQYAGVR  196 (350)
T ss_dssp             CSSSTTCHHHHHHHHT-SCSCEEEECTTCCHHHHHHHHHHHHTTTCCEEEEECCCCSSCCGGGCCTTHHHHHHHHCTTSE
T ss_pred             CcccccCHHHHHHHHh-hCCcEEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCcccCCHHHHHHHHHHCCCCC
Confidence            5667889999999985 699999998876544443    33446877666  2 2222222     24455555544788


Q ss_pred             EEeecCCH----HHHHHHHHhCCCEEEEe
Q 037779          142 FVCGCRNL----GESLRRIREGAAMIRTK  166 (310)
Q Consensus       142 v~~~v~t~----~ea~~a~~~Gad~I~v~  166 (310)
                      ++.+-|+.    .-+..|..+||++|=.+
T Consensus       197 VG~SdHt~g~~~~~~~AAvAlGA~vIEkH  225 (350)
T 3g8r_A          197 IGYSTHEDPDLMEPIMLAVAQGATVFEKH  225 (350)
T ss_dssp             EEEEECCCSSCCHHHHHHHHTTCCEEEEE
T ss_pred             EEcCCCCCCCccHHHHHHHHcCCCEEEEe
Confidence            88887774    23457889999988665

>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} SCOP: c.1.1.1

Probab=93.39  E-value=0.27  Score=43.70  Aligned_cols=42  Identities=21%  Similarity=0.402  Sum_probs=33.7

Q ss_pred             CCCEEEEccCCCCCHHHHHHHH-HcCCCEEEEccccccCC--CHHHHH
Q 037779          221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSG--DPVRRA  265 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~-~~GadgV~VGsai~~~~--dp~~~~  265 (310)
                      .++|  +..|++ +++|+.+++ +.++||++||++-.+++  ++...+
T Consensus       206 ~vrI--lYGGSV-~~~N~~~l~~~~diDG~LVGgASLka~~~~F~~ii  250 (255)
T 1b9b_A          206 SIRI--LYGGSI-KPDNFLGLIVQKDIDGGLVGGASLKESFIELARIM  250 (255)
T ss_dssp             HSEE--EEESSC-CHHHHTTTSSSTTCCEEEESGGGTSTHHHHHHHHH
T ss_pred             cceE--EEcCcC-CHHHHHHHHcCCCCCeeEeehHhhcCccccHHHHH
Confidence            3677  679999 589999999 56999999999999976  554433

>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=93.36  E-value=3.5  Score=37.15  Aligned_cols=82  Identities=20%  Similarity=0.261  Sum_probs=45.8

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGad  116 (310)
                      +.++.+.+.|++++..+.  .|     +-+..+...   +.++.+.+.+  ++||++...-..    .+.++.+.++|||
T Consensus        29 ~lv~~li~~Gv~gl~v~G--tt-----GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gad  101 (300)
T 3eb2_A           29 RLCDDLIQAGVHGLTPLG--ST-----GEFAYLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLGAD  101 (300)
T ss_dssp             HHHHHHHHTTCSCBBTTS--GG-----GTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHcCCCEEEECc--cc-----cCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence            678889999999983331  01     001112222   2344444443  589998744322    2456677889999


Q ss_pred             eee-ecCC---CChhHHHHHHH
Q 037779          117 YVD-ESEV---LTPADEENHIN  134 (310)
Q Consensus       117 ~v~-~~~~---~~~~~~~~~~~  134 (310)
                      +++ .+..   .+.+.+.+.++
T Consensus       102 avlv~~P~y~~~~~~~l~~~f~  123 (300)
T 3eb2_A          102 GILAILEAYFPLKDAQIESYFR  123 (300)
T ss_dssp             EEEEEECCSSCCCHHHHHHHHH
T ss_pred             EEEEcCCCCCCCCHHHHHHHHH
Confidence            988 3322   24445555544

>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...

Probab=93.32  E-value=0.47  Score=43.05  Aligned_cols=85  Identities=13%  Similarity=0.175  Sum_probs=48.6

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChH-------HHHHHHhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQ-------LIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYV  118 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~-------~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v  118 (310)
                      +.|+.+.+.||+.| +++...|.+    |.......+       .++.+++.+++|+++..+  ..+-++.+.++|++.|
T Consensus        67 ~~a~~~v~~GAdiI-DIGgeStrP----ga~~v~~~eE~~RvvpvI~~l~~~~~vpiSIDT~--~~~V~~aAl~aGa~iI  139 (297)
T 1tx2_A           67 RHAKEMRDEGAHII-DIGGESTRP----GFAKVSVEEEIKRVVPMIQAVSKEVKLPISIDTY--KAEVAKQAIEAGAHII  139 (297)
T ss_dssp             HHHHHHHHTTCSEE-EEESCC--------CCCCCHHHHHHHHHHHHHHHHHHSCSCEEEECS--CHHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHcCCCEE-EECCCcCCC----CCCCCCHHHHHHHHHHHHHHHHhcCCceEEEeCC--CHHHHHHHHHcCCCEE
Confidence            66899999999998 665222211    111111122       234556666899988655  3356677888899999


Q ss_pred             e-ecCCCChhHHHHHHHhcC
Q 037779          119 D-ESEVLTPADEENHINKHN  137 (310)
Q Consensus       119 ~-~~~~~~~~~~~~~~~~~~  137 (310)
                      - ++.....++....+.+++
T Consensus       140 Ndvsg~~~d~~m~~~aa~~g  159 (297)
T 1tx2_A          140 NDIWGAKAEPKIAEVAAHYD  159 (297)
T ss_dssp             EETTTTSSCTHHHHHHHHHT
T ss_pred             EECCCCCCCHHHHHHHHHhC
Confidence            6 332211345555555543

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=93.26  E-value=0.28  Score=45.45  Aligned_cols=90  Identities=17%  Similarity=0.126  Sum_probs=60.1

Q ss_pred             ccceeeecCCccccCC--C-HHHHHHHHHcCCcEEEecccccchhhhcCCC----CCCCChHHHHHHHhhc-CcceEeec
Q 037779           28 VGLAQMLRGGVIMDVV--T-PEQARIAEEAGACAVMALERVPADIRAQGGV----ARMSDPQLIKQIKSSV-TIPVMAKA   99 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~~--~-~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~----~~~~~~~~i~~i~~~~-~lPv~~kd   99 (310)
                      .|+..++|.|.-....  + .++++.+.++|+++|.+-.+... . .+.|.    ....+.+.++++++.+ ++||+++.
T Consensus       127 ~PV~vKiR~g~~~~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~-~-g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianG  204 (350)
T 3b0p_A          127 VPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHARSAL-L-ALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNG  204 (350)
T ss_dssp             SCEEEEEESCBTTCCCHHHHHHHHHHHHHTTCCEEEEECSCBC------------CCCCCHHHHHHHHHHCTTSEEEEES
T ss_pred             CceEEEEecCcCccccHHHHHHHHHHHHHcCCCEEEEecCchh-c-ccCcccccCCCcccHHHHHHHHHhCCCCeEEEEC
Confidence            5777888876543321  1 47899999999999843311100 0 01111    0112578899999998 99999999


Q ss_pred             cccchHHHHHHHHcCCCeeee
Q 037779          100 RIGHFVEAQILEAIGVDYVDE  120 (310)
Q Consensus       100 ~i~~~~~~~~~~~aGad~v~~  120 (310)
                      .+.+.+.++.+.+ |||.|.+
T Consensus       205 gI~s~eda~~~l~-GaD~V~i  224 (350)
T 3b0p_A          205 GIRSLEEALFHLK-RVDGVML  224 (350)
T ss_dssp             SCCSHHHHHHHHT-TSSEEEE
T ss_pred             CcCCHHHHHHHHh-CCCEEEE
Confidence            9987778877777 9999973

>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}

Probab=93.20  E-value=0.46  Score=43.55  Aligned_cols=84  Identities=14%  Similarity=0.122  Sum_probs=48.0

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChH-------HHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCe
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQ-------LIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDY  117 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~-------~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~  117 (310)
                      +.|+.+.+.||+.| +++...|.+    | ......+       .++.+++.+ ++|+++..+  +.+-++.+.++|++.
T Consensus        69 ~~A~~~v~~GAdII-DIGgeSTrP----G-~~v~~~eEl~Rv~pvI~~l~~~~~~vpISIDT~--~~~VaeaAl~aGa~i  140 (318)
T 2vp8_A           69 DAVHRAVADGADVI-DVGGVKAGP----G-ERVDVDTEITRLVPFIEWLRGAYPDQLISVDTW--RAQVAKAACAAGADL  140 (318)
T ss_dssp             HHHHHHHHTTCSEE-EEC---------------CHHHHHHHHHHHHHHHHHHSTTCEEEEECS--CHHHHHHHHHHTCCE
T ss_pred             HHHHHHHHCCCCEE-EECCCcCCC----C-CCCCHHHHHHHHHHHHHHHHhhCCCCeEEEeCC--CHHHHHHHHHhCCCE
Confidence            67999999999998 765211111    1 0011122       245556665 889887644  335677888899998


Q ss_pred             eeecCCCChhHHHHHHHhcC
Q 037779          118 VDESEVLTPADEENHINKHN  137 (310)
Q Consensus       118 v~~~~~~~~~~~~~~~~~~~  137 (310)
                      |-.......++....+.+++
T Consensus       141 INDVsg~~d~~m~~vaa~~g  160 (318)
T 2vp8_A          141 INDTWGGVDPAMPEVAAEFG  160 (318)
T ss_dssp             EEETTSSSSTTHHHHHHHHT
T ss_pred             EEECCCCCchHHHHHHHHhC
Confidence            86222223445555555543

>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A* 1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A*

Probab=93.18  E-value=0.37  Score=42.61  Aligned_cols=41  Identities=22%  Similarity=0.357  Sum_probs=32.9

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCCCHHHHH
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVRRA  265 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~dp~~~~  265 (310)
                      .++|  +..|++ +++++.+++. .++||++||++-.+ +++...+
T Consensus       202 ~vrI--lYGGSV-~~~N~~~l~~~~diDG~LVGgAsL~-~~F~~Ii  243 (247)
T 1ney_A          202 ELRI--LYGGSA-NGSNAVTFKDKADVDGFLVGGASLK-PEFVDII  243 (247)
T ss_dssp             HCCE--EEESSC-CTTTGGGGTTCTTCCEEEESGGGGS-THHHHHH
T ss_pred             cceE--EEcCCc-CHhHHHHHHcCCCCCeeEeehHHHH-HHHHHHH
Confidence            4788  579999 5888888885 69999999999999 7665443

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}

Probab=93.16  E-value=1.6  Score=39.07  Aligned_cols=167  Identities=9%  Similarity=-0.014  Sum_probs=87.1

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeecC---
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESE---  122 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~---  122 (310)
                      ++++.+.+.|++.|-..-+..  .++...  .....+.++.+++..++|+.+-.  ...+.++.+.++|++.|.+..   
T Consensus        30 ~i~~~L~~~Gv~~IE~g~~~~--~~~~p~--~~~~~e~~~~i~~~~~~~v~~l~--~n~~~i~~a~~~G~~~V~i~~~~S  103 (295)
T 1ydn_A           30 ALINRLSDCGYARIEATSFVS--PKWVPQ--LADSREVMAGIRRADGVRYSVLV--PNMKGYEAAAAAHADEIAVFISAS  103 (295)
T ss_dssp             HHHHHHTTTTCSEEEEEECSC--TTTCGG--GTTHHHHHHHSCCCSSSEEEEEC--SSHHHHHHHHHTTCSEEEEEEESC
T ss_pred             HHHHHHHHcCcCEEEEccCcC--cccccc--ccCHHHHHHHHHhCCCCEEEEEe--CCHHHHHHHHHCCCCEEEEEEecC
Confidence            679999999999873221111  111100  00124556666655466765433  334678889999999987431   


Q ss_pred             --------CCChhHH-------HHHHHhcCCCCcEEee---------cCCHHHHHH----HHHhCCCEEEEecCCCCCch
Q 037779          123 --------VLTPADE-------ENHINKHNFRVPFVCG---------CRNLGESLR----RIREGAAMIRTKGEAGTGNI  174 (310)
Q Consensus       123 --------~~~~~~~-------~~~~~~~~~~l~v~~~---------v~t~~ea~~----a~~~Gad~I~v~g~~~~~~~  174 (310)
                              ..+..+.       ++.+++++..+...+.         -.+++++..    +.+.|+|.+.+.-..+.   
T Consensus       104 ~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~Dt~G~---  180 (295)
T 1ydn_A          104 EGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLGDTIGR---  180 (295)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEEEETTSC---
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEecCCCCC---
Confidence                    1222222       2333333322210011         134444332    22466666655311000   


Q ss_pred             HHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCC-CCEEEEc--cCCCCCHHHHHHHHHcCCCEEEE
Q 037779          175 VEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGR-LPVVHFA--AGGVATPADAAMMMQLGCDGVFV  251 (310)
Q Consensus       175 ~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~-iPVv~ia--~GGI~t~~di~~~~~~GadgV~V  251 (310)
                                         ..+.          ...++++.+++..+ +|+.+=.  ..|.. ..+...++++|++-|-+
T Consensus       181 -------------------~~P~----------~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla-~an~l~Ai~aG~~~vd~  230 (295)
T 1ydn_A          181 -------------------GTPD----------TVAAMLDAVLAIAPAHSLAGHYHDTGGRA-LDNIRVSLEKGLRVFDA  230 (295)
T ss_dssp             -------------------CCHH----------HHHHHHHHHHTTSCGGGEEEEEBCTTSCH-HHHHHHHHHHTCCEEEE
T ss_pred             -------------------cCHH----------HHHHHHHHHHHhCCCCeEEEEECCCcchH-HHHHHHHHHhCCCEEEe
Confidence                               0110          12556666666544 6775444  57874 78889999999998776

>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...

Probab=93.13  E-value=1.4  Score=39.09  Aligned_cols=111  Identities=15%  Similarity=0.244  Sum_probs=73.5

Q ss_pred             CHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEE
Q 037779          148 NLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHF  227 (310)
Q Consensus       148 t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~i  227 (310)
                      ++.++.+.++.||..+.|....                      .+            +..+.+.+..+++..++||+. 
T Consensus        65 dp~~iA~~~~~GA~aiSVLTd~----------------------~~------------F~Gs~~~L~~vr~~v~lPvLr-  109 (258)
T 4a29_A           65 DPIEYAKFMERYAVGLSITTEE----------------------KY------------FNGSYETLRKIASSVSIPILM-  109 (258)
T ss_dssp             CHHHHHHHHTTTCSEEEEECCS----------------------TT------------TCCCHHHHHHHHTTCSSCEEE-
T ss_pred             CHHHHHHHHhCCCeEEEEeCCC----------------------CC------------CCCCHHHHHHHHHhcCCCEee-
Confidence            5667667778899999886220                      00            123566777888878899864 


Q ss_pred             ccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcC-CC-------hhhHHhhhhccCCceecccccc
Q 037779          228 AAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY-SD-------PDVLAEVSCGLGEAMVGIDLND  299 (310)
Q Consensus       228 a~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~~  299 (310)
                      =..=| ++-++.++..+|||+|++--++..    ...+++|.+..+.. .+       +.-+ +.+-..|..+.||.=.|
T Consensus       110 KDFii-d~yQI~eAr~~GADaILLI~a~L~----~~~l~~l~~~A~~lGl~~LvEVh~~~El-~rAl~~~a~iIGINNRn  183 (258)
T 4a29_A          110 SDFIV-KESQIDDAYNLGADTVLLIVKILT----ERELESLLEYARSYGMEPLILINDENDL-DIALRIGARFIGIMSRD  183 (258)
T ss_dssp             ESCCC-SHHHHHHHHHHTCSEEEEEGGGSC----HHHHHHHHHHHHHTTCCCEEEESSHHHH-HHHHHTTCSEEEECSBC
T ss_pred             ccccc-cHHHHHHHHHcCCCeeehHHhhcC----HHHHHHHHHHHHHHhHHHHHhcchHHHH-HHHhcCCCcEEEEeCCC
Confidence            34444 799999999999999998777765    23456666655443 23       2222 33445799999985333

>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1

Probab=93.07  E-value=0.093  Score=46.29  Aligned_cols=77  Identities=14%  Similarity=0.151  Sum_probs=55.7

Q ss_pred             eeecCCccccCCCHHHHHHHHHcCC-c--EEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHH
Q 037779           32 QMLRGGVIMDVVTPEQARIAEEAGA-C--AVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEA  107 (310)
Q Consensus        32 ~~l~~g~i~~~~~~~~a~~~~~~Ga-~--~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~  107 (310)
                      ++|..|+..  .+++.++.+.+.|. .  .+.++     +-   .|.  ..+.+.++++++.+ ++|+++..+|.+.+++
T Consensus       130 ~rl~~~d~~--~~~~~~~~~a~~g~~~~~~~VYl-----~s---~G~--~~~~~~i~~i~~~~~~~Pv~vGgGI~t~e~a  197 (240)
T 1viz_A          130 AALTEADAD--LNMDDIVAYARVSELLQLPIFYL-----EY---SGV--LGDIEAVKKTKAVLETSTLFYGGGIKDAETA  197 (240)
T ss_dssp             HHHTTBCCC--CCHHHHHHHHHHHHHTTCSEEEE-----EC---TTS--CCCHHHHHHHHHTCSSSEEEEESSCCSHHHH
T ss_pred             EEeeccCCC--CCHHHHHHHHHhCcccCCCEEEE-----eC---CCc--cChHHHHHHHHHhcCCCCEEEEeccCCHHHH
Confidence            344444433  46788888888874 2  23355     11   232  44689999999999 9999999999888888


Q ss_pred             HHHHHcCCCeee-ec
Q 037779          108 QILEAIGVDYVD-ES  121 (310)
Q Consensus       108 ~~~~~aGad~v~-~~  121 (310)
                      +.+.+ |||.|+ .+
T Consensus       198 ~~~~~-gAd~VIVGS  211 (240)
T 1viz_A          198 KQYAE-HADVIVVGN  211 (240)
T ss_dssp             HHHHT-TCSEEEECT
T ss_pred             HHHHh-CCCEEEECh
Confidence            88888 999987 44

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=93.05  E-value=1.9  Score=36.35  Aligned_cols=102  Identities=14%  Similarity=0.091  Sum_probs=61.3

Q ss_pred             HHHHHHHHcCCCeeeecCC-CChhHHHHHHHh-cCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHH
Q 037779          105 VEAQILEAIGVDYVDESEV-LTPADEENHINK-HNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHV  181 (310)
Q Consensus       105 ~~~~~~~~aGad~v~~~~~-~~~~~~~~~~~~-~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~  181 (310)
                      +.++.+.+.|++.+..... ....+.++.+.+ .+..+.+.. .+.+.+++..+.+.|+|.|.+. .             
T Consensus        23 ~~~~~~~~~G~~~i~l~~~~~~~~~~i~~i~~~~~~~l~vg~g~~~~~~~i~~a~~~Gad~V~~~-~-------------   88 (212)
T 2v82_A           23 AHVGAVIDAGFDAVEIPLNSPQWEQSIPAIVDAYGDKALIGAGTVLKPEQVDALARMGCQLIVTP-N-------------   88 (212)
T ss_dssp             HHHHHHHHHTCCEEEEETTSTTHHHHHHHHHHHHTTTSEEEEECCCSHHHHHHHHHTTCCEEECS-S-------------
T ss_pred             HHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHhCCCCeEEEeccccCHHHHHHHHHcCCCEEEeC-C-------------
Confidence            4556777789999874322 122233333333 222333322 3567788899999999988532 1             


Q ss_pred             HHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEE
Q 037779          182 RSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFV  251 (310)
Q Consensus       182 ~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~V  251 (310)
                                                .+.++++..++. ..++  +. | ++|++++.++.+.|+|.|.+
T Consensus        89 --------------------------~~~~~~~~~~~~-g~~~--~~-g-~~t~~e~~~a~~~G~d~v~v  127 (212)
T 2v82_A           89 --------------------------IHSEVIRRAVGY-GMTV--CP-G-CATATEAFTALEAGAQALKI  127 (212)
T ss_dssp             --------------------------CCHHHHHHHHHT-TCEE--EC-E-ECSHHHHHHHHHTTCSEEEE
T ss_pred             --------------------------CCHHHHHHHHHc-CCCE--Ee-e-cCCHHHHHHHHHCCCCEEEE
Confidence                                      012233444432 3455  21 3 88999999999999999986

>3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis, pentose; HET: CIT; 1.90A {Staphylococcus aureus} SCOP: c.1.1.1 PDB: 3uwv_A* 3uwu_A* 3uww_A* 3uwy_A 3uwz_A*

Probab=93.04  E-value=1.3  Score=39.32  Aligned_cols=36  Identities=28%  Similarity=0.409  Sum_probs=30.9

Q ss_pred             CCCEEEEccCCCCCHHHHHHHH-HcCCCEEEEccccccCC
Q 037779          221 RLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~-~~GadgV~VGsai~~~~  259 (310)
                      .++|  +..|++ +++++.+++ +.+.||++||++-.+++
T Consensus       208 ~~rI--lYGGSV-~~~N~~~l~~~~diDG~LVGgASL~~~  244 (254)
T 3m9y_A          208 ATRI--QYGGSV-KPNNIKEYMAQTDIDGALVGGASLKVE  244 (254)
T ss_dssp             TSEE--EECSCC-CTTTHHHHHTSTTCCEEEESGGGSSHH
T ss_pred             CccE--EEcCCc-CHHHHHHHHcCCCCCeEEeeHHhhCHH
Confidence            5778  679999 799999999 56999999999998843

>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}

Probab=93.03  E-value=4.8  Score=36.04  Aligned_cols=83  Identities=18%  Similarity=0.197  Sum_probs=46.9

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGad  116 (310)
                      +.++.+.+.|++++..+.  .|     +-+..+...   +.++.+.+.+  ++||++...-..    .+.++.+.++|||
T Consensus        25 ~lv~~li~~Gv~gl~~~G--tt-----GE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gad   97 (292)
T 2vc6_A           25 DLVEWQIEEGSFGLVPCG--TT-----GESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAGAD   97 (292)
T ss_dssp             HHHHHHHHTTCSEEETTS--GG-----GTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHcCCCEEEECc--cc-----cChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcCCC
Confidence            678889999999984331  01     001112222   2344444443  589988754432    2455677789999


Q ss_pred             eee-ecCC---CChhHHHHHHHh
Q 037779          117 YVD-ESEV---LTPADEENHINK  135 (310)
Q Consensus       117 ~v~-~~~~---~~~~~~~~~~~~  135 (310)
                      +++ .+..   .+..++.+.++.
T Consensus        98 avlv~~P~y~~~s~~~l~~~f~~  120 (292)
T 2vc6_A           98 GVLIVSPYYNKPTQEGIYQHFKA  120 (292)
T ss_dssp             EEEEECCCSSCCCHHHHHHHHHH
T ss_pred             EEEEcCCCCCCCCHHHHHHHHHH
Confidence            987 3322   244556655543

>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A

Probab=93.00  E-value=4.8  Score=36.00  Aligned_cols=83  Identities=19%  Similarity=0.233  Sum_probs=46.6

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGad  116 (310)
                      +.++.+.+.|++++..+.       ..+-+..+...   +.++.+.+.+  ++||++...-.+    .+.++.+.++|||
T Consensus        26 ~lv~~li~~Gv~gl~~~G-------ttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gad   98 (291)
T 3tak_A           26 KLVEWHIEQGTNSIVAVG-------TTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLGAD   98 (291)
T ss_dssp             HHHHHHHHHTCCEEEESS-------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHCCCCEEEECc-------cccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence            678888999999985431       00100112222   2344444443  589998754332    2456677889999


Q ss_pred             eee-ecCC---CChhHHHHHHHh
Q 037779          117 YVD-ESEV---LTPADEENHINK  135 (310)
Q Consensus       117 ~v~-~~~~---~~~~~~~~~~~~  135 (310)
                      +++ .+..   .+.+.+.+.++.
T Consensus        99 avlv~~P~y~~~~~~~l~~~f~~  121 (291)
T 3tak_A           99 AALLVTPYYNKPTQEGLYQHYKA  121 (291)
T ss_dssp             EEEEECCCSSCCCHHHHHHHHHH
T ss_pred             EEEEcCCCCCCCCHHHHHHHHHH
Confidence            988 3322   234455555543

>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*

Probab=92.96  E-value=5.5  Score=36.61  Aligned_cols=83  Identities=13%  Similarity=0.126  Sum_probs=47.2

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCC---hHHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSD---PQLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~---~~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGad  116 (310)
                      +.++.+.+.|+++|..+-  .|     +-+..+..   .+.++.+.+.+  .+||++...-..    .+.++.+.++|||
T Consensus        56 ~lv~~li~~Gv~Gl~v~G--tT-----GE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~Gad  128 (343)
T 2v9d_A           56 ALIDDLIKAGVDGLFFLG--SG-----GEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAGAD  128 (343)
T ss_dssp             HHHHHHHHTTCSCEEESS--TT-----TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHcCCCEEEeCc--cc-----cChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCC
Confidence            678888999999985441  00     00011212   22344444443  589998754332    2455677789999


Q ss_pred             eee-ecCC---CChhHHHHHHHh
Q 037779          117 YVD-ESEV---LTPADEENHINK  135 (310)
Q Consensus       117 ~v~-~~~~---~~~~~~~~~~~~  135 (310)
                      +++ .+..   .+.+.+.+.++.
T Consensus       129 avlv~~P~Y~~~s~~~l~~~f~~  151 (343)
T 2v9d_A          129 GIVVINPYYWKVSEANLIRYFEQ  151 (343)
T ss_dssp             EEEEECCSSSCCCHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCHHHHHHHHHH
Confidence            987 3322   244556655544

>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A

Probab=92.84  E-value=5.1  Score=35.86  Aligned_cols=83  Identities=13%  Similarity=0.139  Sum_probs=46.4

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccch----HHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGHF----VEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~~----~~~~~~~~aGad  116 (310)
                      +.++.+.+.|++++..+-  .|     +-+..+...   +.++.+.+.+  ++||++...-...    +.++.+.++|||
T Consensus        26 ~lv~~li~~Gv~gl~~~G--tt-----GE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gad   98 (292)
T 2ojp_A           26 KLIDYHVASGTSAIVSVG--TT-----GESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIV   98 (292)
T ss_dssp             HHHHHHHHHTCCEEEESS--TT-----TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSSCS
T ss_pred             HHHHHHHHcCCCEEEECc--cc-----cchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcCCC
Confidence            678888999999985441  00     001112222   2344444443  5899887544322    344556669999


Q ss_pred             eee-ecCC---CChhHHHHHHHh
Q 037779          117 YVD-ESEV---LTPADEENHINK  135 (310)
Q Consensus       117 ~v~-~~~~---~~~~~~~~~~~~  135 (310)
                      +++ .+..   .+.+.+.+.++.
T Consensus        99 avlv~~P~y~~~s~~~l~~~f~~  121 (292)
T 2ojp_A           99 GCLTVTPYYNRPSQEGLYQHFKA  121 (292)
T ss_dssp             EEEEECCCSSCCCHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCHHHHHHHHHH
Confidence            987 3322   245556665554

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=92.83  E-value=1.2  Score=40.42  Aligned_cols=117  Identities=18%  Similarity=0.163  Sum_probs=72.1

Q ss_pred             cCcceEeeccc--cchHHHHHHHHcCCCeeeecCCCC-hhHHHHHHH---hc---CCCCcEEee----cCCH-HHHHHHH
Q 037779           91 VTIPVMAKARI--GHFVEAQILEAIGVDYVDESEVLT-PADEENHIN---KH---NFRVPFVCG----CRNL-GESLRRI  156 (310)
Q Consensus        91 ~~lPv~~kd~i--~~~~~~~~~~~aGad~v~~~~~~~-~~~~~~~~~---~~---~~~l~v~~~----v~t~-~ea~~a~  156 (310)
                      .+.|++.....  .+.+.+..+..+|+-.++....++ +.++.+.++   +.   .+++.+++.    -.+. +.++.+.
T Consensus        14 ~~~Pii~apM~gvs~~~la~av~~aGglG~i~~~~~~s~~~l~~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~~~~~~~~   93 (328)
T 2gjl_A           14 VEHPIMQGGMQWVGRAEMAAAVANAGGLATLSALTQPSPEALAAEIARCRELTDRPFGVNLTLLPTQKPVPYAEYRAAII   93 (328)
T ss_dssp             CSSSEEECCCTTTCSHHHHHHHHHTTSBCEEETTTSSSHHHHHHHHHHHHHHCSSCCEEEEEECCCSSCCCHHHHHHHHH
T ss_pred             CCCCEEECCCCCCCcHHHHHHHHHCCCeEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEeccccccCccHHHHHHHHH
Confidence            46788775433  345667777888876665332233 555444333   21   123444443    1233 4556677


Q ss_pred             HhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHH
Q 037779          157 REGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPA  236 (310)
Q Consensus       157 ~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~  236 (310)
                      +.|+|+|.++..                                       .+.++++.+++. .+|++    ..+.+++
T Consensus        94 ~~g~d~V~~~~g---------------------------------------~p~~~~~~l~~~-gi~vi----~~v~t~~  129 (328)
T 2gjl_A           94 EAGIRVVETAGN---------------------------------------DPGEHIAEFRRH-GVKVI----HKCTAVR  129 (328)
T ss_dssp             HTTCCEEEEEES---------------------------------------CCHHHHHHHHHT-TCEEE----EEESSHH
T ss_pred             hcCCCEEEEcCC---------------------------------------CcHHHHHHHHHc-CCCEE----eeCCCHH
Confidence            889999887621                                       124455666654 56774    3477899


Q ss_pred             HHHHHHHcCCCEEEE
Q 037779          237 DAAMMMQLGCDGVFV  251 (310)
Q Consensus       237 di~~~~~~GadgV~V  251 (310)
                      ++..+.+.|+|+|++
T Consensus       130 ~a~~~~~~GaD~i~v  144 (328)
T 2gjl_A          130 HALKAERLGVDAVSI  144 (328)
T ss_dssp             HHHHHHHTTCSEEEE
T ss_pred             HHHHHHHcCCCEEEE
Confidence            999999999999999

>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}

Probab=92.76  E-value=4.9  Score=36.44  Aligned_cols=83  Identities=14%  Similarity=0.123  Sum_probs=46.0

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccc---hHHHHHHHHcCCCe
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGH---FVEAQILEAIGVDY  117 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~---~~~~~~~~~aGad~  117 (310)
                      +.++.+.+.|++++..+.  .|     +-+..+...   +.++.+.+.+  ++||++...-..   .+.++.+.++|||+
T Consensus        37 ~lv~~li~~Gv~gl~v~G--tT-----GE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~st~~ai~la~~A~~~Gada  109 (314)
T 3d0c_A           37 DNVEFLLQNGIEVIVPNG--NT-----GEFYALTIEEAKQVATRVTELVNGRATVVAGIGYSVDTAIELGKSAIDSGADC  109 (314)
T ss_dssp             HHHHHHHHTTCSEECTTS--GG-----GTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECSSHHHHHHHHHHHHHTTCSE
T ss_pred             HHHHHHHHcCCCEEEECc--cc-----CChhhCCHHHHHHHHHHHHHHhCCCCeEEecCCcCHHHHHHHHHHHHHcCCCE
Confidence            678889999999984331  01     001112222   2344444443  589998754422   23556677799999


Q ss_pred             ee-ecCC---CChhHHHHHHHh
Q 037779          118 VD-ESEV---LTPADEENHINK  135 (310)
Q Consensus       118 v~-~~~~---~~~~~~~~~~~~  135 (310)
                      ++ .+..   .+...+.+.++.
T Consensus       110 vlv~~P~y~~~s~~~l~~~f~~  131 (314)
T 3d0c_A          110 VMIHQPVHPYITDAGAVEYYRN  131 (314)
T ss_dssp             EEECCCCCSCCCHHHHHHHHHH
T ss_pred             EEECCCCCCCCCHHHHHHHHHH
Confidence            98 3322   244455555443

>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...

Probab=92.76  E-value=0.21  Score=46.74  Aligned_cols=93  Identities=13%  Similarity=0.157  Sum_probs=61.0

Q ss_pred             cccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccc--hh------hhcCC---CC-CCCChHHHHHHHhhc--C
Q 037779           27 KVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPA--DI------RAQGG---VA-RMSDPQLIKQIKSSV--T   92 (310)
Q Consensus        27 ~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~--d~------r~~~G---~~-~~~~~~~i~~i~~~~--~   92 (310)
                      ..|+.++++-+.- +..-.++|+.++++|+++|+..|....  +.      ...+|   .. .....+.++++++.+  +
T Consensus       220 ~~Pv~vKi~p~~~-~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~~  298 (367)
T 3zwt_A          220 RPAVLVKIAPDLT-SQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQGR  298 (367)
T ss_dssp             CCEEEEEECSCCC-HHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTTC
T ss_pred             CceEEEEeCCCCC-HHHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCCC
Confidence            4577777765421 101146899999999999976652110  00      01111   10 011246788999998  8


Q ss_pred             cceEeeccccchHHHHHHHHcCCCeeee
Q 037779           93 IPVMAKARIGHFVEAQILEAIGVDYVDE  120 (310)
Q Consensus        93 lPv~~kd~i~~~~~~~~~~~aGad~v~~  120 (310)
                      +||+....|.+.+++..+..+|||.|.+
T Consensus       299 ipvI~~GGI~s~~da~~~l~~GAd~V~v  326 (367)
T 3zwt_A          299 VPIIGVGGVSSGQDALEKIRAGASLVQL  326 (367)
T ss_dssp             SCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred             ceEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence            9999999998878888888899999973

>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0

Probab=92.63  E-value=5.6  Score=36.03  Aligned_cols=83  Identities=13%  Similarity=0.059  Sum_probs=46.6

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccc---hHHHHHHHHcCCCe
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGH---FVEAQILEAIGVDY  117 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~---~~~~~~~~~aGad~  117 (310)
                      +.++.+.+.|+++|..+-  .|.+     +..+...   +.++.+.+.+  .+||++...-..   .+.++.+.++|||+
T Consensus        37 ~lv~~li~~Gv~Gl~v~G--tTGE-----~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg~~t~~ai~la~~A~~~Gada  109 (316)
T 3e96_A           37 ETVDRIVDNGIDVIVPCG--NTSE-----FYALSLEEAKEEVRRTVEYVHGRALVVAGIGYATSTAIELGNAAKAAGADA  109 (316)
T ss_dssp             HHHHHHHTTTCCEECTTS--GGGT-----GGGSCHHHHHHHHHHHHHHHTTSSEEEEEECSSHHHHHHHHHHHHHHTCSE
T ss_pred             HHHHHHHHcCCCEEEeCc--cccC-----cccCCHHHHHHHHHHHHHHhCCCCcEEEEeCcCHHHHHHHHHHHHhcCCCE
Confidence            678889999999984331  0100     1112222   2344444443  589998754332   24556777899999


Q ss_pred             eee-cCC---CChhHHHHHHHh
Q 037779          118 VDE-SEV---LTPADEENHINK  135 (310)
Q Consensus       118 v~~-~~~---~~~~~~~~~~~~  135 (310)
                      ++. +..   .+.+.+.+.++.
T Consensus       110 vlv~~P~y~~~s~~~l~~~f~~  131 (316)
T 3e96_A          110 VMIHMPIHPYVTAGGVYAYFRD  131 (316)
T ss_dssp             EEECCCCCSCCCHHHHHHHHHH
T ss_pred             EEEcCCCCCCCCHHHHHHHHHH
Confidence            983 222   244555555543

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*

Probab=92.56  E-value=0.8  Score=41.07  Aligned_cols=113  Identities=19%  Similarity=0.151  Sum_probs=58.7

Q ss_pred             HHHHHHHcCCcEEEecccccchhhhcCCCCC-CCChHHHHHHHhhc-CcceEeeccc----c----ch----HHHHHHHH
Q 037779           47 QARIAEEAGACAVMALERVPADIRAQGGVAR-MSDPQLIKQIKSSV-TIPVMAKARI----G----HF----VEAQILEA  112 (310)
Q Consensus        47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~-~~~~~~i~~i~~~~-~lPv~~kd~i----~----~~----~~~~~~~~  112 (310)
                      .++.+.+.|+|.| .++     ...+..... ..-.+.+..+|+.. ++|++.-.+-    |    ..    +.++.+..
T Consensus        57 ~~~~~~~~gaD~V-ElR-----vD~l~~~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~eGG~~~~~~~~~~~ll~~~l~  130 (276)
T 3o1n_A           57 EALAYREADFDIL-EWR-----VDHFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDLNRAAVD  130 (276)
T ss_dssp             HHHHHTTSCCSEE-EEE-----GGGCTTTTCHHHHHHHHHHHHHHCCSSCEEEECCBGGGTCSBCCCHHHHHHHHHHHHH
T ss_pred             HHHHHhhCCCCEE-EEE-----eccccccCcHHHHHHHHHHHHHhcCCCCEEEEEEEhhhCCCCCCCHHHHHHHHHHHHh
Confidence            3555666899987 442     112221100 00023455677776 8999874322    1    11    23344455


Q ss_pred             cC-CCeeeecCCCChhHHHHHHHh--cCCCCcEEeecCCH------HHH----HHHHHhCCCEEEEe
Q 037779          113 IG-VDYVDESEVLTPADEENHINK--HNFRVPFVCGCRNL------GES----LRRIREGAAMIRTK  166 (310)
Q Consensus       113 aG-ad~v~~~~~~~~~~~~~~~~~--~~~~l~v~~~v~t~------~ea----~~a~~~Gad~I~v~  166 (310)
                      .| +|+|.+.-. .+.+..+.+..  +..+..++++.|++      ++.    .++.+.|||++++-
T Consensus       131 ~g~~dyIDvEl~-~~~~~~~~l~~~a~~~~~kvI~S~Hdf~~tP~~~el~~~~~~~~~~GaDIvKia  196 (276)
T 3o1n_A          131 SGLVDMIDLELF-TGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPKIA  196 (276)
T ss_dssp             HTCCSEEEEEGG-GCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             cCCCCEEEEECc-CCHHHHHHHHHHHHhCCCEEEEEeecCCCCcCHHHHHHHHHHHHHcCCCEEEEE
Confidence            78 999974321 22333333321  23457777776632      233    34556799999875

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=92.56  E-value=0.41  Score=43.44  Aligned_cols=82  Identities=15%  Similarity=0.135  Sum_probs=57.1

Q ss_pred             cEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC
Q 037779          141 PFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG  220 (310)
Q Consensus       141 ~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~  220 (310)
                      .++.++.+++.++.+.+.||+.+.+.-...+ .                 ...+.  +     .....+.+.++.+++..
T Consensus        23 gv~~d~~~~e~A~~ye~~GA~~lsvLe~~~~-D-----------------i~~~~--g-----~~R~~~~~~i~~i~~~v   77 (297)
T 4adt_A           23 GVIMDVKNVEQAKIAEKAGAIGVMILENIPS-E-----------------LRNTD--G-----VARSVDPLKIEEIRKCI   77 (297)
T ss_dssp             CEEEEESSHHHHHHHHHHTCSEEEECCCCC-----------------------CC--C-----CCCCCCHHHHHHHHTTC
T ss_pred             CcccCCCcHHHHHHHHHcCCCEEEEecCCCC-c-----------------chhcC--C-----cccCCCHHHHHHHHHhc
Confidence            4666888999999999999999887511000 0                 00000  0     00123688889999988


Q ss_pred             CCCEEEEccCCCCCHHHHHHHHHcCCCEE
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQLGCDGV  249 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~~GadgV  249 (310)
                      ++||+  +-++|...+.++.+.++|||.|
T Consensus        78 ~iPvl--~k~~i~~ide~qil~aaGAD~I  104 (297)
T 4adt_A           78 SINVL--AKVRIGHFVEAQILEELKVDML  104 (297)
T ss_dssp             CSEEE--EEEETTCHHHHHHHHHTTCSEE
T ss_pred             CCCEE--EeccCCcHHHHHHHHHcCCCEE
Confidence            99994  4578887888888889999999

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=92.53  E-value=0.6  Score=41.45  Aligned_cols=71  Identities=27%  Similarity=0.264  Sum_probs=51.3

Q ss_pred             CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee
Q 037779           43 VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        43 ~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      .+++.++.+.+.|++.|..+..      .++......+++.++.+++.+++|+++...|.+.+.+..+.++|||+|+
T Consensus       135 ~~~~~a~~~~~~gad~v~~~~~------~~Gt~~~~~~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~~GAdgVi  205 (264)
T 1xm3_A          135 DDVVLARKLEELGVHAIMPGAS------PIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGADGVL  205 (264)
T ss_dssp             SCHHHHHHHHHHTCSCBEECSS------STTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred             CCHHHHHHHHHhCCCEEEECCc------ccCCCCCCCCHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcCCCEEE
Confidence            3467788888888887632210      0110011234788999999889999999888877888888999999998

>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*

Probab=92.49  E-value=0.19  Score=44.09  Aligned_cols=76  Identities=13%  Similarity=0.181  Sum_probs=57.3

Q ss_pred             eeeecCCccccCCCHHHHHHHHHcCCc----EEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchH
Q 037779           31 AQMLRGGVIMDVVTPEQARIAEEAGAC----AVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFV  105 (310)
Q Consensus        31 ~~~l~~g~i~~~~~~~~a~~~~~~Ga~----~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~  105 (310)
                      +++|.+|...  .+++.++.+.+.|..    .+.++     +.   .|.  ..+.+.++++++.+ ++|+++..+|.+.+
T Consensus       136 ~~rl~~g~~~--~~~e~~~~~a~~g~~~l~~~~Vyl-----~~---~G~--~~~~~~i~~i~~~~~~~Pv~vGgGI~s~e  203 (234)
T 2f6u_A          136 VARVTKALCN--IDKELAASYALVGEKLFNLPIIYI-----EY---SGT--YGNPELVAEVKKVLDKARLFYGGGIDSRE  203 (234)
T ss_dssp             HHHHTTBCCC--CCHHHHHHHHHHHHHTTCCSEEEE-----EC---TTS--CCCHHHHHHHHHHCSSSEEEEESCCCSHH
T ss_pred             eEEeecCCCC--CCHHHHHHHHHhhhhhcCCCEEEE-----eC---CCC--cchHHHHHHHHHhCCCCCEEEEecCCCHH
Confidence            4455555554  367889999998872    33355     22   222  45689999999999 99999999998888


Q ss_pred             HHHHHHHcCCCeee
Q 037779          106 EAQILEAIGVDYVD  119 (310)
Q Consensus       106 ~~~~~~~aGad~v~  119 (310)
                      +++.+.+ |||.|+
T Consensus       204 ~a~~~~~-gAd~VI  216 (234)
T 2f6u_A          204 KAREMLR-YADTII  216 (234)
T ss_dssp             HHHHHHH-HSSEEE
T ss_pred             HHHHHHh-CCCEEE
Confidence            8888888 999987

>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A

Probab=92.48  E-value=0.71  Score=40.91  Aligned_cols=77  Identities=17%  Similarity=0.295  Sum_probs=46.9

Q ss_pred             eecCCHHHHHHHHHhCCCEEEEecC-CCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCC
Q 037779          144 CGCRNLGESLRRIREGAAMIRTKGE-AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRL  222 (310)
Q Consensus       144 ~~v~t~~ea~~a~~~Gad~I~v~g~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~i  222 (310)
                      +.+.|.+++..|.+.|||=|=.... ..+                                 ++.+++.+++.+++..++
T Consensus         6 vc~~s~~~a~~A~~~GAdRIELc~~L~~G---------------------------------GlTPS~g~i~~~~~~~~i   52 (256)
T 1twd_A            6 ICCYSMECALTAQQNGADRVELCAAPKEG---------------------------------GLTPSLGVLKSVRQRVTI   52 (256)
T ss_dssp             EEESSHHHHHHHHHTTCSEEEECBCGGGT---------------------------------CBCCCHHHHHHHHHHCCS
T ss_pred             EEeCCHHHHHHHHHcCCCEEEEcCCcccC---------------------------------CCCCCHHHHHHHHHHcCC
Confidence            4567899999999999997765421 111                                 123455566666665667


Q ss_pred             CEEEEc---cCCC-CCH-------HHHHHHHHcCCCEEEEcc
Q 037779          223 PVVHFA---AGGV-ATP-------ADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       223 PVv~ia---~GGI-~t~-------~di~~~~~~GadgV~VGs  253 (310)
                      ||.++.   .|+- .|.       +|+..+.++|+|||++|-
T Consensus        53 pv~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~GadGvV~G~   94 (256)
T 1twd_A           53 PVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGFPGLVTGV   94 (256)
T ss_dssp             CEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECC
T ss_pred             ceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEee
Confidence            765442   2222 222       245666677888887774

>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}

Probab=92.40  E-value=5.7  Score=35.43  Aligned_cols=83  Identities=22%  Similarity=0.283  Sum_probs=46.7

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGad  116 (310)
                      +.++.+.+.|++++..+.  .|     +-+..+...   +.++.+.+.+  ++||++...-..    .+.++.+.++|||
T Consensus        25 ~lv~~li~~Gv~gl~~~G--tt-----GE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~Gad   97 (289)
T 2yxg_A           25 ENINFLIENGVSGIVAVG--TT-----GESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVGAD   97 (289)
T ss_dssp             HHHHHHHHTTCSEEEESS--TT-----TTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHCCCCEEEECc--cc-----cChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCC
Confidence            678888999999985441  00     001112222   2344444443  589988754432    2455677789999


Q ss_pred             eee-ecCC---CChhHHHHHHHh
Q 037779          117 YVD-ESEV---LTPADEENHINK  135 (310)
Q Consensus       117 ~v~-~~~~---~~~~~~~~~~~~  135 (310)
                      +++ .+..   .+.+.+.+.++.
T Consensus        98 avlv~~P~y~~~s~~~l~~~f~~  120 (289)
T 2yxg_A           98 AVLSITPYYNKPTQEGLRKHFGK  120 (289)
T ss_dssp             EEEEECCCSSCCCHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCHHHHHHHHHH
Confidence            987 3322   244455555543

>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A

Probab=92.23  E-value=5.2  Score=36.97  Aligned_cols=130  Identities=8%  Similarity=0.007  Sum_probs=78.7

Q ss_pred             HHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeee-cCCCChhHHHHHHHhcCCCCcEEee--cCCHHHHHHHHH-
Q 037779           82 QLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE-SEVLTPADEENHINKHNFRVPFVCG--CRNLGESLRRIR-  157 (310)
Q Consensus        82 ~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~-~~~~~~~~~~~~~~~~~~~l~v~~~--v~t~~ea~~a~~-  157 (310)
                      ..+.+.++..+++++.--+  +...++.+.+.|+|.+-+ +..++...+++.+.+  .+.+++++  ..|.+|...+++ 
T Consensus        94 ~~L~~~~~~~Gi~~~st~~--d~~svd~l~~~~v~~~KI~S~~~~n~~LL~~va~--~gkPviLstGmat~~Ei~~Ave~  169 (349)
T 2wqp_A           94 IKLKEYVESKGMIFISTLF--SRAAALRLQRMDIPAYKIGSGECNNYPLIKLVAS--FGKPIILSTGMNSIESIKKSVEI  169 (349)
T ss_dssp             HHHHHHHHHTTCEEEEEEC--SHHHHHHHHHHTCSCEEECGGGTTCHHHHHHHHT--TCSCEEEECTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCeEEEeeC--CHHHHHHHHhcCCCEEEECcccccCHHHHHHHHh--cCCeEEEECCCCCHHHHHHHHHH
Confidence            3455667778898876544  335667788899999863 344556667776765  35666664  678888876653 


Q ss_pred             ---hCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCC
Q 037779          158 ---EGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVA  233 (310)
Q Consensus       158 ---~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~  233 (310)
                         .|.+++-.++..                    .+++ +++         ..+...+..+++.. ++||. ..+=..+
T Consensus       170 i~~~G~~iiLlhc~s--------------------~Yp~-~~~---------~~nL~ai~~lk~~f~~lpVg-~sdHt~G  218 (349)
T 2wqp_A          170 IREAGVPYALLHCTN--------------------IYPT-PYE---------DVRLGGMNDLSEAFPDAIIG-LSDHTLD  218 (349)
T ss_dssp             HHHHTCCEEEEECCC--------------------CSSC-CGG---------GCCTHHHHHHHHHCTTSEEE-EECCSSS
T ss_pred             HHHcCCCEEEEeccC--------------------CCCC-Chh---------hcCHHHHHHHHHHCCCCCEE-eCCCCCc
Confidence               577777665321                    1121 111         12445667777765 78984 3322222


Q ss_pred             CHHHHHHHHHcCCC
Q 037779          234 TPADAAMMMQLGCD  247 (310)
Q Consensus       234 t~~di~~~~~~Gad  247 (310)
                       ..-...+..+||+
T Consensus       219 -~~~~~AAvAlGA~  231 (349)
T 2wqp_A          219 -NYACLGAVALGGS  231 (349)
T ss_dssp             -SHHHHHHHHHTCC
T ss_pred             -HHHHHHHHHhCCC
Confidence             3445566789999

>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*

Probab=92.23  E-value=0.85  Score=40.76  Aligned_cols=89  Identities=19%  Similarity=0.176  Sum_probs=55.2

Q ss_pred             ceEEEEeccCCCccccccceeeecCCccccCCC--HHHHHHHHHcCCcEEEecccccc---hhhhcCCCCCCCChHHHHH
Q 037779           12 NGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVT--PEQARIAEEAGACAVMALERVPA---DIRAQGGVARMSDPQLIKQ   86 (310)
Q Consensus        12 ~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~--~~~a~~~~~~Ga~~I~~l~~~~~---d~r~~~G~~~~~~~~~i~~   86 (310)
                      .-+|.|+--.+|-++        ..|......+  .+.|+.+.+.||+.| +++-.+.   +....        ...++.
T Consensus        10 ~~iigEilN~Tpdsf--------~dg~~~~~~~~a~~~a~~~v~~GAdiI-DIg~~s~~~eE~~rv--------~~vi~~   72 (271)
T 2yci_X           10 FIMIGERINGMFKDI--------REAILNKDPRPIQEWARRQAEKGAHYL-DVNTGPTADDPVRVM--------EWLVKT   72 (271)
T ss_dssp             CEEEEEEEETTSHHH--------HHHHHTTCCHHHHHHHHHHHHTTCSEE-EEECCSCSSCHHHHH--------HHHHHH
T ss_pred             CEEEEEecCCChhhH--------HHhhhhCCHHHHHHHHHHHHHCCCCEE-EEcCCcCchhHHHHH--------HHHHHH
Confidence            457899888888331        1122111122  367999999999998 6641111   11111        334567


Q ss_pred             HHhhcCcceEeeccccchHHHHHHHHc--CCCeee
Q 037779           87 IKSSVTIPVMAKARIGHFVEAQILEAI--GVDYVD  119 (310)
Q Consensus        87 i~~~~~lPv~~kd~i~~~~~~~~~~~a--Gad~v~  119 (310)
                      +++.+++|+++-..  +.+-++.+.++  |++.|.
T Consensus        73 l~~~~~~pisIDT~--~~~v~~aal~a~~Ga~iIN  105 (271)
T 2yci_X           73 IQEVVDLPCCLDST--NPDAIEAGLKVHRGHAMIN  105 (271)
T ss_dssp             HHHHCCCCEEEECS--CHHHHHHHHHHCCSCCEEE
T ss_pred             HHHhCCCeEEEeCC--CHHHHHHHHHhCCCCCEEE
Confidence            77777999988655  34566777777  999997

>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}

Probab=92.08  E-value=6  Score=34.95  Aligned_cols=176  Identities=13%  Similarity=0.122  Sum_probs=96.0

Q ss_pred             HHHHHHHHcCCcEEEeccccc-chhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-CC
Q 037779           46 EQARIAEEAGACAVMALERVP-ADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-EV  123 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~-~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~~  123 (310)
                      ++++.+.++|++++-.--+.| |.+..|.|.. ......++++++..++|++.-.+-  ...++.+.+. +|.+-+. ..
T Consensus        41 ~~a~~l~~~Ga~~vk~~~fkprts~~~~~g~~-~egl~~l~~~~~~~Gl~~~te~~d--~~~~~~l~~~-vd~~kIga~~  116 (262)
T 1zco_A           41 KVAEFLAEVGIKVLRGGAFKPRTSPYSFQGYG-EKALRWMREAADEYGLVTVTEVMD--TRHVELVAKY-SDILQIGARN  116 (262)
T ss_dssp             HHHHHHHHTTCCEEECBSSCCCSSTTSCCCCT-HHHHHHHHHHHHHHTCEEEEECCC--GGGHHHHHHH-CSEEEECGGG
T ss_pred             HHHHHHHHcCCCEEEEEecccCCCcccccCcc-HHHHHHHHHHHHHcCCcEEEeeCC--HHhHHHHHhh-CCEEEECccc
Confidence            679999999999872110111 1111112211 122445667777789999775332  2346667777 8888744 33


Q ss_pred             CChhHHHHHHHhcCCCCcEEee--cC-CHHHHHHHHH----hCC-CEEEEe-cCCCCCchHHHHHHHHHhhcceeccccc
Q 037779          124 LTPADEENHINKHNFRVPFVCG--CR-NLGESLRRIR----EGA-AMIRTK-GEAGTGNIVEAVRHVRSVMGDIRVLRNM  194 (310)
Q Consensus       124 ~~~~~~~~~~~~~~~~l~v~~~--v~-t~~ea~~a~~----~Ga-d~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~  194 (310)
                      .....+.+.+.+  .+.++++.  .. |++|+..+++    .|. +++-.+ |-...+                   .+ 
T Consensus       117 ~~n~~ll~~~a~--~~kPV~lk~G~~~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~-------------------~y-  174 (262)
T 1zco_A          117 SQNFELLKEVGK--VENPVLLKRGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFE-------------------TA-  174 (262)
T ss_dssp             TTCHHHHHHHTT--SSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSC-------------------CS-
T ss_pred             ccCHHHHHHHHh--cCCcEEEecCCCCCHHHHHHHHHHHHHCCCCeEEEEECCCCCCC-------------------Cc-
Confidence            344455555544  56777775  44 7888877663    455 454444 210100                   11 


Q ss_pred             CchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCH----HHHHHHHHcCCCEEEEccccc
Q 037779          195 DDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATP----ADAAMMMQLGCDGVFVGSGVF  256 (310)
Q Consensus       195 ~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~----~di~~~~~~GadgV~VGsai~  256 (310)
                      +.         ...+...+..+++..++||+..++=+-+..    .-...+..+|++|+++=+-+.
T Consensus       175 ~~---------~~v~L~ai~~lk~~~~~pVi~d~sH~~g~~~~v~~~~~aAva~Ga~Gl~iE~H~~  231 (262)
T 1zco_A          175 TR---------FTLDISAVPVVKELSHLPIIVDPSHPAGRRSLVIPLAKAAYAIGADGIMVEVHPE  231 (262)
T ss_dssp             SS---------SBCCTTHHHHHHHHBSSCEEECSSTTTCSGGGHHHHHHHHHHTTCSEEEEEBCSS
T ss_pred             Ch---------hhcCHHHHHHHHhhhCCCEEEEcCCCCCccchHHHHHHHHHHcCCCEEEEEecCC
Confidence            10         112333455566655689854332222221    224556789999999999864

>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}

Probab=92.07  E-value=6.5  Score=35.28  Aligned_cols=82  Identities=15%  Similarity=0.173  Sum_probs=46.0

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGad  116 (310)
                      +.++.+.+.|++++..+.  .|.+     +..+...   +.++.+.+.+  ++||++...-..    .+.++.+.++|||
T Consensus        25 ~lv~~li~~Gv~gi~v~G--ttGE-----~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gad   97 (297)
T 2rfg_A           25 GLVDWQIKHGAHGLVPVG--TTGE-----SPTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAGAD   97 (297)
T ss_dssp             HHHHHHHHTTCSEEECSS--GGGT-----GGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHcCCCEEEECc--cccc-----hhhCCHHHHHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHHHhcCCC
Confidence            678888999999984431  0100     1112222   2344444443  589988754432    2455677789999


Q ss_pred             eee-ecCC---CChhHHHHHHH
Q 037779          117 YVD-ESEV---LTPADEENHIN  134 (310)
Q Consensus       117 ~v~-~~~~---~~~~~~~~~~~  134 (310)
                      +++ .+..   .+.+.+.+.++
T Consensus        98 avlv~~P~y~~~s~~~l~~~f~  119 (297)
T 2rfg_A           98 AVLCVAGYYNRPSQEGLYQHFK  119 (297)
T ss_dssp             EEEECCCTTTCCCHHHHHHHHH
T ss_pred             EEEEcCCCCCCCCHHHHHHHHH
Confidence            998 3322   23445555444

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=92.02  E-value=0.39  Score=44.24  Aligned_cols=90  Identities=12%  Similarity=-0.027  Sum_probs=58.5

Q ss_pred             ccceeeecCCccccC-CC----HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc
Q 037779           28 VGLAQMLRGGVIMDV-VT----PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG  102 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~-~~----~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~  102 (310)
                      .++..+|+.....+. .+    .++++.++++|+++|...++.........+.  ..+.+.++++++.+++||+....+.
T Consensus       210 ~pv~vris~~~~~~~g~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~--~~~~~~~~~ir~~~~iPVi~~Ggi~  287 (338)
T 1z41_A          210 GPLFVRVSASDYTDKGLDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFP--GYQVSFAEKIREQADMATGAVGMIT  287 (338)
T ss_dssp             SCEEEEEECCCCSTTSCCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCT--TTTHHHHHHHHHHHCCEEEECSSCC
T ss_pred             CcEEEEecCcccCCCCCCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCc--cchHHHHHHHHHHCCCCEEEECCCC
Confidence            356666665432221 12    3679999999999985542110000000010  1136788999999999999998887


Q ss_pred             chHHHHHHHHcC-CCeee
Q 037779          103 HFVEAQILEAIG-VDYVD  119 (310)
Q Consensus       103 ~~~~~~~~~~aG-ad~v~  119 (310)
                      +.+.++.+.+.| ||.|.
T Consensus       288 s~~~a~~~l~~G~aD~V~  305 (338)
T 1z41_A          288 DGSMAEEILQNGRADLIF  305 (338)
T ss_dssp             SHHHHHHHHHTTSCSEEE
T ss_pred             CHHHHHHHHHcCCceEEe
Confidence            777888888888 99987

>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi}

Probab=91.99  E-value=3.6  Score=36.08  Aligned_cols=39  Identities=28%  Similarity=0.500  Sum_probs=31.9

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccCCCHHH
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSGDPVR  263 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~~dp~~  263 (310)
                      .++|  +..|++ +++++.+++.. ..||++||++=.+ ++...
T Consensus       199 ~vrI--lYGGSV-~~~N~~~l~~~~diDG~LVGgASL~-~~F~~  238 (244)
T 2v5b_A          199 QLRI--LYGGSV-TAKNARTLYQMRDINGFLVGGASLK-PEFVE  238 (244)
T ss_dssp             HCEE--EECSCC-CHHHHHHHHTSTTCCEEEESGGGSS-TTHHH
T ss_pred             cccE--EEcCCC-CHhHHHHHhcCCCCCeeeechHHHH-HHHHH
Confidence            3677  678999 59999999974 8999999999888 66443

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=91.86  E-value=1.7  Score=39.62  Aligned_cols=117  Identities=18%  Similarity=0.131  Sum_probs=69.4

Q ss_pred             cCcceEeeccc--cchHHHHHHHHcCCCeeeecCCCChhHHHHHHHh-c-CCCCcEEeec----CCH-HHHHHHHHhCCC
Q 037779           91 VTIPVMAKARI--GHFVEAQILEAIGVDYVDESEVLTPADEENHINK-H-NFRVPFVCGC----RNL-GESLRRIREGAA  161 (310)
Q Consensus        91 ~~lPv~~kd~i--~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~-~-~~~l~v~~~v----~t~-~ea~~a~~~Gad  161 (310)
                      ...|++...+.  .+.+.+..+.++|+-.++.....++..+.+.+++ . ..+.++.+.+    .+. +.++.+.+.|+|
T Consensus        11 ~~~Pii~apM~g~s~~~la~av~~aG~lG~i~~~~~~~~~~~~~i~~i~~~~~~p~gvnl~~~~~~~~~~~~~a~~~g~d   90 (332)
T 2z6i_A           11 IDYPIFQGGMAWVADGDLAGAVSKAGGLGIIGGGNAPKEVVKANIDKIKSLTDKPFGVNIMLLSPFVEDIVDLVIEEGVK   90 (332)
T ss_dssp             CSSSEEECCCTTTCCHHHHHHHHHHTSBEEEECTTCCHHHHHHHHHHHHHHCCSCEEEEECTTSTTHHHHHHHHHHTTCS
T ss_pred             CCCCEEeCCCCCCCcHHHHHHHHhCCCcEEeCCCCCCHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHHCCCC
Confidence            46787664333  3456667777788865554444466555444433 1 1123344432    222 345667789999


Q ss_pred             EEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHH
Q 037779          162 MIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMM  241 (310)
Q Consensus       162 ~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~  241 (310)
                      +|.+++.    .                                   +.++++.+++. .+||+    ..+.+++.+..+
T Consensus        91 ~V~~~~g----~-----------------------------------p~~~i~~l~~~-g~~v~----~~v~~~~~a~~~  126 (332)
T 2z6i_A           91 VVTTGAG----N-----------------------------------PSKYMERFHEA-GIIVI----PVVPSVALAKRM  126 (332)
T ss_dssp             EEEECSS----C-----------------------------------GGGTHHHHHHT-TCEEE----EEESSHHHHHHH
T ss_pred             EEEECCC----C-----------------------------------hHHHHHHHHHc-CCeEE----EEeCCHHHHHHH
Confidence            9988631    1                                   12234445442 56774    236788999999


Q ss_pred             HHcCCCEEEE
Q 037779          242 MQLGCDGVFV  251 (310)
Q Consensus       242 ~~~GadgV~V  251 (310)
                      .+.|+|++.+
T Consensus       127 ~~~GaD~i~v  136 (332)
T 2z6i_A          127 EKIGADAVIA  136 (332)
T ss_dssp             HHTTCSCEEE
T ss_pred             HHcCCCEEEE
Confidence            9999999999

>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*

Probab=91.85  E-value=3.2  Score=38.41  Aligned_cols=176  Identities=13%  Similarity=0.114  Sum_probs=96.7

Q ss_pred             HHHHHHHHcCCcEEEeccccc-chhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec-CC
Q 037779           46 EQARIAEEAGACAVMALERVP-ADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES-EV  123 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~-~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~-~~  123 (310)
                      ++|+.+.++|++.+-.--+.| |.+..|.|.. ...+..+++.++..++|++.-.+  +...++.+.+. +|.+-+. ..
T Consensus       124 ~~a~~~k~aGa~~vr~q~fKprTs~~~f~glg-~egl~~l~~~~~e~Gl~~~te~~--d~~~~~~l~~~-vd~lkIgAr~  199 (350)
T 1vr6_A          124 ETAHFLSELGVKVLRGGAYKPRTSPYSFQGLG-EKGLEYLREAADKYGMYVVTEAL--GEDDLPKVAEY-ADIIQIGARN  199 (350)
T ss_dssp             HHHHHHHHTTCCEEECBSCCCCCSTTSCCCCT-HHHHHHHHHHHHHHTCEEEEECS--SGGGHHHHHHH-CSEEEECGGG
T ss_pred             HHHHHHHHcCCCeeeeeEEeCCCChHhhcCCC-HHHHHHHHHHHHHcCCcEEEEeC--CHHHHHHHHHh-CCEEEECccc
Confidence            679999999999861110111 1122233321 12245566777788999977533  22455666677 8888744 33


Q ss_pred             CChhHHHHHHHhcCCCCcEEee--cC-CHHHHHHHHH----hCC-CEEEEe-cC-CCCCchHHHHHHHHHhhcceecccc
Q 037779          124 LTPADEENHINKHNFRVPFVCG--CR-NLGESLRRIR----EGA-AMIRTK-GE-AGTGNIVEAVRHVRSVMGDIRVLRN  193 (310)
Q Consensus       124 ~~~~~~~~~~~~~~~~l~v~~~--v~-t~~ea~~a~~----~Ga-d~I~v~-g~-~~~~~~~~~~~~~~~~~~~~~~l~~  193 (310)
                      .....+.+.+.+  .+.+++++  .. |++|...+++    .|. +++-.. |. .|.+                     
T Consensus       200 ~~n~~LL~~va~--~~kPVilk~G~~~tl~ei~~Ave~i~~~GN~~viLceRG~~typ~---------------------  256 (350)
T 1vr6_A          200 AQNFRLLSKAGS--YNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEK---------------------  256 (350)
T ss_dssp             TTCHHHHHHHHT--TCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCC---------------------
T ss_pred             ccCHHHHHHHHc--cCCcEEEcCCCCCCHHHHHHHHHHHHHCCCCeEEEEeCCCCCCCC---------------------
Confidence            445556666654  46777775  44 6677776654    465 554432 22 1211                     


Q ss_pred             cCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEcc--CCCCC--HHHHHHHHHcCCCEEEEcccccc
Q 037779          194 MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAA--GGVAT--PADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       194 ~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~--GGI~t--~~di~~~~~~GadgV~VGsai~~  257 (310)
                      -+.         ...+...+..+++..++||+..++  +|-..  +.-...+..+||+|+++=+-+.-
T Consensus       257 ~~~---------~~vdl~ai~~lk~~~~lpVi~dssHs~G~~~~v~~~a~AAvA~GA~Gl~IE~H~~p  315 (350)
T 1vr6_A          257 ATR---------NTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEP  315 (350)
T ss_dssp             SSS---------SBCCTTHHHHHHHHBSSCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEBCSCG
T ss_pred             cCh---------hhhhHHHHHHHHHhhCCCEEEeCCCCCcccchHHHHHHHHHHhCCCEEEEEecCCc
Confidence            000         112334455566655689843222  13211  22344556789999999987753

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=91.77  E-value=0.28  Score=44.42  Aligned_cols=90  Identities=16%  Similarity=0.104  Sum_probs=57.8

Q ss_pred             ccceeeecCCccccCCC-HHHHHHHHHcCCcEEEecccc----cchhh----------hcC---CCC-CCCChHHHHHHH
Q 037779           28 VGLAQMLRGGVIMDVVT-PEQARIAEEAGACAVMALERV----PADIR----------AQG---GVA-RMSDPQLIKQIK   88 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~~~-~~~a~~~~~~Ga~~I~~l~~~----~~d~r----------~~~---G~~-~~~~~~~i~~i~   88 (310)
                      .|+..+++.+.  +..+ .++++.+.++|+++|...|..    ..+.+          .++   |.. .....+.+++++
T Consensus       159 ~Pv~vKi~~~~--~~~~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~  236 (311)
T 1jub_A          159 KPLGVKLPPYF--DLVHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFY  236 (311)
T ss_dssp             SCEEEEECCCC--SHHHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHH
T ss_pred             CCEEEEECCCC--CHHHHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHH
Confidence            46666666542  1111 356999999999998554421    01100          111   210 001256788899


Q ss_pred             hhc--CcceEeeccccchHHHHHHHHcCCCeee
Q 037779           89 SSV--TIPVMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        89 ~~~--~lPv~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      +.+  ++||+....+.+.+++..+..+|||.|.
T Consensus       237 ~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~  269 (311)
T 1jub_A          237 TRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQ  269 (311)
T ss_dssp             TTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred             HhcCCCCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence            888  8999999999877788777789999997

>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}

Probab=91.55  E-value=2  Score=37.92  Aligned_cols=111  Identities=13%  Similarity=0.058  Sum_probs=58.8

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh----HHHHHHHhhc-CcceEeeccc---------cch----HHH
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDP----QLIKQIKSSV-TIPVMAKARI---------GHF----VEA  107 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~----~~i~~i~~~~-~lPv~~kd~i---------~~~----~~~  107 (310)
                      +.++.+.+.|+|.+ -++     ...+..   ..+.    +.+..+++.. ++|++.-.+-         +..    +.+
T Consensus        36 ~~~~~~~~~~~D~v-ElR-----vD~l~~---~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~eGG~~~~~~~~~~~~ll  106 (257)
T 2yr1_A           36 REAEEVCRKQPDLL-EWR-----ADFFRA---IDDQERVLATANGLRNIAGEIPILFTIRSEREGGQPIPLNEAEVRRLI  106 (257)
T ss_dssp             HHHHHHHHSCCSEE-EEE-----GGGCTT---TTCHHHHHHHHHHHHHHSSSCCEEEECCCTTTTCCCCSSCHHHHHHHH
T ss_pred             HHHHHHhhcCCCEE-EEE-----eecccc---cCcHHHHHHHHHHHHHhccCCCEEEEEeecccCCCCCCCCHHHHHHHH
Confidence            44666677899987 442     112211   1112    2445677776 8999874321         111    233


Q ss_pred             HHHHHcC-CCeeeecCCCChhHHHHHHHh-cCCCCcEEeecCC----H--HHH----HHHHHhCCCEEEEe
Q 037779          108 QILEAIG-VDYVDESEVLTPADEENHINK-HNFRVPFVCGCRN----L--GES----LRRIREGAAMIRTK  166 (310)
Q Consensus       108 ~~~~~aG-ad~v~~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t----~--~ea----~~a~~~Gad~I~v~  166 (310)
                      +.+...| +|+|.+.-... ..+.+.+.. +..+..++++-|+    +  ++.    .++.+.|||++++-
T Consensus       107 ~~~~~~g~~d~iDvEl~~~-~~~~~l~~~~~~~~~kvI~S~Hdf~~tP~~~el~~~~~~~~~~gaDivKia  176 (257)
T 2yr1_A          107 EAICRSGAIDLVDYELAYG-ERIADVRRMTEECSVWLVVSRHYFDGTPRKETLLADMRQAERYGADIAKVA  176 (257)
T ss_dssp             HHHHHHTCCSEEEEEGGGT-THHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             HHHHHcCCCCEEEEECCCC-hhHHHHHHHHHhCCCEEEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEE
Confidence            4445578 99997321111 122222321 2345777777663    3  333    34556899999875

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=91.54  E-value=1.3  Score=39.23  Aligned_cols=112  Identities=20%  Similarity=0.146  Sum_probs=61.5

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCC-CCCChHHHHHHHh---hcCcceEeecccc--------chH---H-HHH
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVA-RMSDPQLIKQIKS---SVTIPVMAKARIG--------HFV---E-AQI  109 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~-~~~~~~~i~~i~~---~~~lPv~~kd~i~--------~~~---~-~~~  109 (310)
                      ..++.+.+.|+++|+..        .+-|+. .....+.++++++   ..++|+++.....        +.+   . ++.
T Consensus        96 ~~ve~Ai~~Ga~~v~~~--------~nig~~~~~~~~~~~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~~~i~~a~~~  167 (263)
T 1w8s_A           96 CSVEEAVSLGASAVGYT--------IYPGSGFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARI  167 (263)
T ss_dssp             SCHHHHHHTTCSEEEEE--------ECTTSTTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCEEEEE--------EecCCcCHHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCccccCCCHHHHHHHHHH
Confidence            56888889999999432        111110 0001334444443   3479998876551        111   2 356


Q ss_pred             HHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEe--ecC--CHHHHHHHH----HhCCCEEEEe
Q 037779          110 LEAIGVDYVDESEVLTPADEENHINKHNFRVPFVC--GCR--NLGESLRRI----REGAAMIRTK  166 (310)
Q Consensus       110 ~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~--~v~--t~~ea~~a~----~~Gad~I~v~  166 (310)
                      +.++|||+|-.+-..++ +.++.+.+.-..+++.+  +++  |.+++....    +.|++-+.+.
T Consensus       168 a~~~GAD~vkt~~~~~~-e~~~~~~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~Gvsvg  231 (263)
T 1w8s_A          168 ALELGADAMKIKYTGDP-KTFSWAVKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVG  231 (263)
T ss_dssp             HHHHTCSEEEEECCSSH-HHHHHHHHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEES
T ss_pred             HHHcCCCEEEEcCCCCH-HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence            67799999864321133 33444443222225444  477  788776555    7899966553

>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}

Probab=91.35  E-value=7.7  Score=34.69  Aligned_cols=83  Identities=13%  Similarity=0.089  Sum_probs=46.7

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGad  116 (310)
                      +.++.+.+.|++++..+.  .|     +-+..+...   +.++.+.+.+  .+||++...-..    .+.++.+.++|||
T Consensus        25 ~lv~~li~~Gv~gl~~~G--tt-----GE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gad   97 (294)
T 2ehh_A           25 NLIEFHVDNGTDAILVCG--TT-----GESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVGAD   97 (294)
T ss_dssp             HHHHHHHTTTCCEEEESS--TT-----TTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHCCCCEEEECc--cc-----cChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCC
Confidence            678888999999985441  01     001112222   2344444443  589988754432    2455677789999


Q ss_pred             eee-ecCC---CChhHHHHHHHh
Q 037779          117 YVD-ESEV---LTPADEENHINK  135 (310)
Q Consensus       117 ~v~-~~~~---~~~~~~~~~~~~  135 (310)
                      +++ .+..   .+.+.+.+.++.
T Consensus        98 avlv~~P~y~~~s~~~l~~~f~~  120 (294)
T 2ehh_A           98 GALVVVPYYNKPTQRGLYEHFKT  120 (294)
T ss_dssp             EEEEECCCSSCCCHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCHHHHHHHHHH
Confidence            987 3322   244555555543

>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A

Probab=91.32  E-value=8  Score=34.85  Aligned_cols=83  Identities=8%  Similarity=0.075  Sum_probs=46.9

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCC---hHHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSD---PQLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~---~~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGad  116 (310)
                      +.++.+.+.|++++..+-  .|.+     +..+..   .+.++.+.+.+  ++||++...-..    .+.++.+.++|||
T Consensus        39 ~lv~~li~~Gv~Gl~v~G--tTGE-----~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gad  111 (307)
T 3s5o_A           39 ENLHKLGTFPFRGFVVQG--SNGE-----FPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGAD  111 (307)
T ss_dssp             HHHHHHTTSCCSEEEESS--GGGT-----GGGSCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHcCCCEEEECc--cccc-----hhhCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcCCC
Confidence            568888899999985441  0100     111212   23445555554  589988744322    2455677889999


Q ss_pred             eee-ecCCC-----ChhHHHHHHHh
Q 037779          117 YVD-ESEVL-----TPADEENHINK  135 (310)
Q Consensus       117 ~v~-~~~~~-----~~~~~~~~~~~  135 (310)
                      +++ .+...     +.+.+.+.++.
T Consensus       112 avlv~~P~y~~~~~s~~~l~~~f~~  136 (307)
T 3s5o_A          112 AAMVVTPCYYRGRMSSAALIHHYTK  136 (307)
T ss_dssp             EEEEECCCTTGGGCCHHHHHHHHHH
T ss_pred             EEEEcCCCcCCCCCCHHHHHHHHHH
Confidence            998 33222     34455555543

>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A

Probab=91.20  E-value=1.6  Score=38.47  Aligned_cols=85  Identities=13%  Similarity=0.262  Sum_probs=60.5

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCC--------Chhh
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYS--------DPDV  280 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~--------~~~~  280 (310)
                      +.+.+..+++..++||+. =...+ ++-++.++..+|||+|++--+...   + ..+++|.+..+...        +..-
T Consensus        89 s~~dL~~ir~~v~lPvLr-KDfi~-~~~qi~ea~~~GAD~ilLi~a~l~---~-~~l~~l~~~a~~lGl~~lvEv~~~eE  162 (251)
T 1i4n_A           89 DPAFVRAARNLTCRPILA-KDFYI-DTVQVKLASSVGADAILIIARILT---A-EQIKEIYEAAEELGMDSLVEVHSRED  162 (251)
T ss_dssp             CTHHHHHHHTTCCSCEEE-ECCCC-STHHHHHHHHTTCSEEEEEGGGSC---H-HHHHHHHHHHHTTTCEEEEEECSHHH
T ss_pred             CHHHHHHHHHhCCCCEEE-eeCCC-CHHHHHHHHHcCCCEEEEecccCC---H-HHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence            456677888878899974 46666 567899999999999998877654   2 56777777766642        2222


Q ss_pred             HHhhhhcc-CCceeccccccc
Q 037779          281 LAEVSCGL-GEAMVGIDLNDV  300 (310)
Q Consensus       281 ~~~~~~~~-~~~~~~~~~~~~  300 (310)
                       .+.+..+ |.++.|+...|.
T Consensus       163 -~~~A~~l~g~~iIGinnr~l  182 (251)
T 1i4n_A          163 -LEKVFSVIRPKIIGINTRDL  182 (251)
T ss_dssp             -HHHHHTTCCCSEEEEECBCT
T ss_pred             -HHHHHhcCCCCEEEEeCccc
Confidence             3445566 999999987654

>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*

Probab=91.09  E-value=1.6  Score=39.50  Aligned_cols=62  Identities=16%  Similarity=0.222  Sum_probs=39.1

Q ss_pred             HHHHHHhc--CCCCEEEEccCCCCCHHHHH---HHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          212 LVMQTKQL--GRLPVVHFAAGGVATPADAA---MMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       212 l~~~i~~~--~~iPVv~ia~GGI~t~~di~---~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      +++.+.+.  .++||+ +-.|+.++.+.+.   .+.++|||++++..-.|..++.....+-|....++
T Consensus        70 v~~~~~~~~~grvpVi-aGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a  136 (301)
T 1xky_A           70 LYRHVVSVVDKRVPVI-AGTGSNNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAES  136 (301)
T ss_dssp             HHHHHHHHHTTSSCEE-EECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCceEE-eCCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh
Confidence            44444432  478996 3445554444333   34467999999999999888776666555555444

>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*

Probab=91.07  E-value=3.6  Score=37.14  Aligned_cols=84  Identities=18%  Similarity=0.177  Sum_probs=47.8

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCC-------hHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCe
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSD-------PQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDY  117 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~-------~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~  117 (310)
                      .+.|+.+.+.||+.| +++-.+|.+    |+.....       ...++.+++. ++|+++..+  +.+-++.+.++|++.
T Consensus        55 ~~~a~~~v~~GAdII-DIGgeSTrP----ga~~v~~~eE~~Rv~pvI~~l~~~-~vpiSIDT~--~~~Va~aAl~aGa~i  126 (294)
T 2dqw_A           55 LERAREMVAEGADIL-DLGAESTRP----GAAPVPVEEEKRRLLPVLEAVLSL-GVPVSVDTR--KPEVAEEALKLGAHL  126 (294)
T ss_dssp             HHHHHHHHHHTCSEE-EEECC---------------CCHHHHHHHHHHHHHTT-CSCEEEECS--CHHHHHHHHHHTCSE
T ss_pred             HHHHHHHHHCCCCEE-EECCCcCCC----CCCCCCHHHHHHHHHHHHHHHHhC-CCeEEEECC--CHHHHHHHHHhCCCE
Confidence            478999999999998 665222211    1100001       2233444444 889987644  335677888899998


Q ss_pred             ee-ecCCCChhHHHHHHHhcC
Q 037779          118 VD-ESEVLTPADEENHINKHN  137 (310)
Q Consensus       118 v~-~~~~~~~~~~~~~~~~~~  137 (310)
                      |- ++.. ..++....+.+++
T Consensus       127 INdVsg~-~d~~m~~v~a~~~  146 (294)
T 2dqw_A          127 LNDVTGL-RDERMVALAARHG  146 (294)
T ss_dssp             EECSSCS-CCHHHHHHHHHHT
T ss_pred             EEECCCC-CChHHHHHHHHhC
Confidence            86 3333 4455666555543

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=91.02  E-value=0.89  Score=41.82  Aligned_cols=78  Identities=19%  Similarity=0.146  Sum_probs=52.6

Q ss_pred             CCHHHHHHHHHcCCcEEEecc--cc---cchh-hhc-----CCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHH
Q 037779           43 VTPEQARIAEEAGACAVMALE--RV---PADI-RAQ-----GGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQIL  110 (310)
Q Consensus        43 ~~~~~a~~~~~~Ga~~I~~l~--~~---~~d~-r~~-----~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~  110 (310)
                      .+++.++.+.++|+++|...|  ..   +.+. +..     ....-.+..+.++++++.+ ++||+....+.+.+++..+
T Consensus       190 ~~~~~a~~a~~~Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~~~ipvia~GGI~~~~d~~k~  269 (349)
T 1p0k_A          190 MSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKA  269 (349)
T ss_dssp             CCHHHHHHHHHHTCSEEEEEC---------------CCGGGGTTCSCCHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHH
Confidence            358999999999999985543  10   0000 110     0011134567788888876 8999999888877788888


Q ss_pred             HHcCCCeeee
Q 037779          111 EAIGVDYVDE  120 (310)
Q Consensus       111 ~~aGad~v~~  120 (310)
                      .++|||.|.+
T Consensus       270 l~~GAd~V~i  279 (349)
T 1p0k_A          270 IALGASCTGM  279 (349)
T ss_dssp             HHTTCSEEEE
T ss_pred             HHcCCCEEEE
Confidence            8899999973

>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A

Probab=90.92  E-value=1.8  Score=39.07  Aligned_cols=118  Identities=15%  Similarity=0.121  Sum_probs=64.5

Q ss_pred             HHHHHHHHcCCcEEEeccc--ccchhhhcCCCCCCCChHHHHHHHhhc----CcceEeeccccc---------hHHHHHH
Q 037779           46 EQARIAEEAGACAVMALER--VPADIRAQGGVARMSDPQLIKQIKSSV----TIPVMAKARIGH---------FVEAQIL  110 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~--~~~d~r~~~G~~~~~~~~~i~~i~~~~----~lPv~~kd~i~~---------~~~~~~~  110 (310)
                      +.++.++++|+.+| .++.  .|+-..+.+|..+.+..+.+.+|+..+    +.++.++.+.+.         .+.++.+
T Consensus        98 ~~v~~l~~aGa~gv-~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ai~ra~ay  176 (295)
T 1xg4_A           98 RTVKSMIKAGAAGL-HIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIERAQAY  176 (295)
T ss_dssp             HHHHHHHHHTCSEE-EEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCeEE-EECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHHHHHHHHHHH
Confidence            67899999999999 5641  111111222343444445555555443    345555544431         2456788


Q ss_pred             HHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecC----CH-HHHHHHHHhCCCEEEEe
Q 037779          111 EAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCR----NL-GESLRRIREGAAMIRTK  166 (310)
Q Consensus       111 ~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~----t~-~ea~~a~~~Gad~I~v~  166 (310)
                      .++|||.|......+.+++.+.....  .+|+++...    ++ -......++|.+.+.+.
T Consensus       177 ~eAGAd~i~~e~~~~~~~~~~i~~~~--~iP~~~N~~~~g~~p~~~~~eL~~~G~~~v~~~  235 (295)
T 1xg4_A          177 VEAGAEMLFPEAITELAMYRQFADAV--QVPILANITEFGATPLFTTDELRSAHVAMALYP  235 (295)
T ss_dssp             HHTTCSEEEETTCCSHHHHHHHHHHH--CSCBEEECCSSSSSCCCCHHHHHHTTCSEEEES
T ss_pred             HHcCCCEEEEeCCCCHHHHHHHHHHc--CCCEEEEecccCCCCCCCHHHHHHcCCCEEEEC
Confidence            88999999855442234444433332  355543221    11 12344556799988764

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=90.78  E-value=0.53  Score=43.06  Aligned_cols=92  Identities=15%  Similarity=0.216  Sum_probs=57.3

Q ss_pred             ccceeeecCCccccCCCHHHHHHHHHcCCcEEEeccccc--chh------hhcC---CCC-CCCChHHHHHHHhhc--Cc
Q 037779           28 VGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVP--ADI------RAQG---GVA-RMSDPQLIKQIKSSV--TI   93 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~--~d~------r~~~---G~~-~~~~~~~i~~i~~~~--~l   93 (310)
                      .|+..+++.+. ......++++.++++|+++|..-|...  .+.      ..++   |.. .....+.++++++.+  ++
T Consensus       212 ~Pv~vKi~~~~-~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i~~~~~~~i  290 (336)
T 1f76_A          212 VPIAVKIAPDL-SEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRLSLELNGRL  290 (336)
T ss_dssp             CCEEEECCSCC-CHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHHHHHHTTSS
T ss_pred             CceEEEecCCC-CHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHHHHHhCCCC
Confidence            45566655431 100114679999999999996544110  000      0111   100 001236788888888  89


Q ss_pred             ceEeeccccchHHHHHHHHcCCCeeee
Q 037779           94 PVMAKARIGHFVEAQILEAIGVDYVDE  120 (310)
Q Consensus        94 Pv~~kd~i~~~~~~~~~~~aGad~v~~  120 (310)
                      ||+....+.+.+++..+.++|||.|-+
T Consensus       291 pVi~~GGI~~~~da~~~l~~GAd~V~i  317 (336)
T 1f76_A          291 PIIGVGGIDSVIAAREKIAAGASLVQI  317 (336)
T ss_dssp             CEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred             CEEEECCCCCHHHHHHHHHCCCCEEEe
Confidence            999999998778888888899999973

>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}

Probab=90.57  E-value=9.1  Score=34.20  Aligned_cols=82  Identities=7%  Similarity=0.049  Sum_probs=46.2

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGad  116 (310)
                      +.++.+.+.|++++..+.       ..+-+..+...   +.++.+.+.+  ++||++...-..    .+.++.+.++|||
T Consensus        28 ~lv~~li~~Gv~gl~~~G-------ttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~Gad  100 (294)
T 3b4u_A           28 AHARRCLSNGCDSVTLFG-------TTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGAR  100 (294)
T ss_dssp             HHHHHHHHTTCSEEEESS-------TTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHcCCCEEEECc-------cccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcCCC
Confidence            678889999999985441       00001112222   2344455544  489988754432    2455677789999


Q ss_pred             eee-ecCC----CChhHHHHHHH
Q 037779          117 YVD-ESEV----LTPADEENHIN  134 (310)
Q Consensus       117 ~v~-~~~~----~~~~~~~~~~~  134 (310)
                      +++ .+..    .+...+.+.++
T Consensus       101 avlv~~P~y~~~~s~~~l~~~f~  123 (294)
T 3b4u_A          101 NILLAPPSYFKNVSDDGLFAWFS  123 (294)
T ss_dssp             EEEECCCCSSCSCCHHHHHHHHH
T ss_pred             EEEEcCCcCCCCCCHHHHHHHHH
Confidence            998 3322    23345555444

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=90.55  E-value=0.76  Score=42.90  Aligned_cols=74  Identities=19%  Similarity=0.204  Sum_probs=53.6

Q ss_pred             CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc--CcceEeeccccchHHHHHHHHcCCCeee
Q 037779           42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV--TIPVMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~--~lPv~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      +.+++.++.+.++|+++|.+-|.   ..+...  .-....+.+.++++.+  ++||+....+.+..++..+.++|||.|.
T Consensus       237 v~~~e~a~~a~~~Gad~I~vs~~---ggr~~~--~g~~~~~~l~~v~~~v~~~ipVia~GGI~~g~D~~kalalGAd~V~  311 (368)
T 2nli_A          237 IQHPEDADMAIKRGASGIWVSNH---GARQLY--EAPGSFDTLPAIAERVNKRVPIVFDSGVRRGEHVAKALASGADVVA  311 (368)
T ss_dssp             ECSHHHHHHHHHTTCSEEEECCG---GGTSCS--SCCCHHHHHHHHHHHHTTSSCEEECSSCCSHHHHHHHHHTTCSEEE
T ss_pred             CCCHHHHHHHHHcCCCEEEEcCC---CcCCCC--CCCChHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEE
Confidence            35689999999999999954320   011111  1134467888888877  6999999888776777777889999997


Q ss_pred             e
Q 037779          120 E  120 (310)
Q Consensus       120 ~  120 (310)
                      +
T Consensus       312 i  312 (368)
T 2nli_A          312 L  312 (368)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=90.55  E-value=1.1  Score=39.36  Aligned_cols=115  Identities=19%  Similarity=0.133  Sum_probs=60.7

Q ss_pred             HHHHHHHHHcCCcEEE-ecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecc---------cc-c-hHHH-HHHH
Q 037779           45 PEQARIAEEAGACAVM-ALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKAR---------IG-H-FVEA-QILE  111 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~-~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~---------i~-~-~~~~-~~~~  111 (310)
                      .+.++.+.++|++.|. ++|....+...+     ......+.+.++..++|+++...         .. + ..++ +.+.
T Consensus       102 ~~~v~~a~~~Ga~~v~~~l~~~~~~~~~~-----~~~~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~  176 (273)
T 2qjg_A          102 VTTVEEAIRMGADAVSIHVNVGSDEDWEA-----YRDLGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGA  176 (273)
T ss_dssp             CSCHHHHHHTTCSEEEEEEEETSTTHHHH-----HHHHHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEEEecCCCCHHHH-----HHHHHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHH
Confidence            4678889999999982 122000000000     00122333344446888887431         11 1 1233 6677


Q ss_pred             HcCCCeeeecCCCChhHHHHHHHhcCCCCcEEe--ecC--CHHH----HHHHHHhCCCEEEEe
Q 037779          112 AIGVDYVDESEVLTPADEENHINKHNFRVPFVC--GCR--NLGE----SLRRIREGAAMIRTK  166 (310)
Q Consensus       112 ~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~--~v~--t~~e----a~~a~~~Gad~I~v~  166 (310)
                      ++|+|+|..+....+. ..+.+.+. .++++++  +++  +.++    +..+.+.|++.+.+.
T Consensus       177 ~~Gad~i~~~~~~~~~-~l~~i~~~-~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg  237 (273)
T 2qjg_A          177 ELGADIVKTSYTGDID-SFRDVVKG-CPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVG  237 (273)
T ss_dssp             HTTCSEEEECCCSSHH-HHHHHHHH-CSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECC
T ss_pred             HcCCCEEEECCCCCHH-HHHHHHHh-CCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEee
Confidence            8999998754323333 33444332 2455555  365  4666    555567899988764

>3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas vaginalis} PDB: 3qsr_A

Probab=90.40  E-value=2.3  Score=37.66  Aligned_cols=34  Identities=21%  Similarity=0.505  Sum_probs=28.9

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEcccccc
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFK  257 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~  257 (310)
                      .++|  +..|++ +++++.+++. .++||++||++-.+
T Consensus       207 ~vrI--lYGGSV-~~~N~~~l~~~~diDG~LVGgASL~  241 (255)
T 3qst_A          207 KVRI--LYGGSV-KPNNCNELAACPDVDGFLVGGASLE  241 (255)
T ss_dssp             HCEE--EECSCC-CTTTHHHHHHSTTCCEEEECGGGGS
T ss_pred             cccE--EEcCCc-CHhHHHHHhcCCCCCEEEeeHHHhh
Confidence            4677  679999 5899988886 69999999999888

>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7

Probab=90.35  E-value=2.3  Score=38.49  Aligned_cols=118  Identities=18%  Similarity=0.127  Sum_probs=64.7

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhh--cCCCCCCCChHHHHHHHhhc----CcceEeeccccc---------hHHHHHH
Q 037779           46 EQARIAEEAGACAVMALERVPADIRA--QGGVARMSDPQLIKQIKSSV----TIPVMAKARIGH---------FVEAQIL  110 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~--~~G~~~~~~~~~i~~i~~~~----~lPv~~kd~i~~---------~~~~~~~  110 (310)
                      +.++.+.++|+.++ .++......++  ..|..+.+..+.+.+|+...    +.++++..+.+.         .+.++.+
T Consensus       102 ~~v~~l~~aGaagv-~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gldeai~Ra~ay  180 (298)
T 3eoo_A          102 RTIRSFIKAGVGAV-HLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGIDAAIERAIAY  180 (298)
T ss_dssp             HHHHHHHHTTCSEE-EEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCeEE-EECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCHHHHHHHHHhh
Confidence            66899999999998 46411110111  11222333344455554432    345555544431         2456778


Q ss_pred             HHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecC----CH-HHHHHHHHhCCCEEEEe
Q 037779          111 EAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCR----NL-GESLRRIREGAAMIRTK  166 (310)
Q Consensus       111 ~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~----t~-~ea~~a~~~Gad~I~v~  166 (310)
                      .++|||.|......+++++.+..+..  ..++++.+.    ++ -......++|...|...
T Consensus       181 ~~AGAD~if~~~~~~~ee~~~~~~~~--~~Pl~~n~~~~g~tp~~~~~eL~~lGv~~v~~~  239 (298)
T 3eoo_A          181 VEAGADMIFPEAMKTLDDYRRFKEAV--KVPILANLTEFGSTPLFTLDELKGANVDIALYC  239 (298)
T ss_dssp             HHTTCSEEEECCCCSHHHHHHHHHHH--CSCBEEECCTTSSSCCCCHHHHHHTTCCEEEEC
T ss_pred             HhcCCCEEEeCCCCCHHHHHHHHHHc--CCCeEEEeccCCCCCCCCHHHHHHcCCeEEEEc
Confidence            88999999865554566666655553  245544321    11 12334556798888764

>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, I structural genomics; 1.55A {Cryptosporidium parvum iowa II}

Probab=90.35  E-value=3.9  Score=36.45  Aligned_cols=37  Identities=27%  Similarity=0.488  Sum_probs=30.5

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCCCH
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGDP  261 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~dp  261 (310)
                      .++|  +..|++ +++++.+++. .++||++||++-.+ ++.
T Consensus       226 ~vrI--LYGGSV-~~~N~~el~~~~diDG~LVGgASL~-~~F  263 (271)
T 3krs_A          226 NLRI--IYGGSV-TPDNCNELIKCADIDGFLVGGASLK-PTF  263 (271)
T ss_dssp             HCCE--EECSCC-CTTTHHHHHHSTTCCEEEESGGGGS-TTH
T ss_pred             CccE--EEcCCc-CHHHHHHHhcCCCCCEEEeeHHhhh-HHH
Confidence            4788  569999 5899998886 69999999999998 443

>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}

Probab=90.32  E-value=4.4  Score=31.80  Aligned_cols=55  Identities=18%  Similarity=0.188  Sum_probs=38.0

Q ss_pred             cHHHHHHHHhc---CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 037779          209 PYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ  270 (310)
Q Consensus       209 ~~~l~~~i~~~---~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~  270 (310)
                      .+++++.+++.   .++||+++  .+-.+.++..+++++|+++++     .++-++.+....+.+
T Consensus        72 G~el~~~ir~~~~~~~ipvI~l--Ta~~~~~~~~~~~~~Ga~~yl-----~KP~~~~~L~~~i~~  129 (134)
T 3to5_A           72 GIDLLKNIRADEELKHLPVLMI--TAEAKREQIIEAAQAGVNGYI-----VKPFTAATLKEKLDK  129 (134)
T ss_dssp             HHHHHHHHHHSTTTTTCCEEEE--ESSCCHHHHHHHHHTTCCEEE-----ESSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCCeEEEE--ECCCCHHHHHHHHHCCCCEEE-----ECCCCHHHHHHHHHH
Confidence            46777877653   46899755  455579999999999999874     455555554444433

>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}

Probab=90.25  E-value=10  Score=34.25  Aligned_cols=84  Identities=8%  Similarity=0.072  Sum_probs=47.2

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGV  115 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGa  115 (310)
                      .+.++.+.+.|++++..+.  .|     +-+..+...   +.++.+.+.+  ++||++...-..    .+.++.+.++|+
T Consensus        31 ~~lv~~li~~Gv~Gl~v~G--tT-----GE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga  103 (311)
T 3h5d_A           31 PALIEHLLAHHTDGILLAG--TT-----AESPTLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFGG  103 (311)
T ss_dssp             HHHHHHHHHTTCCCEEESS--TT-----TTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHcCCCEEEECc--cc-----cChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcCC
Confidence            4789999999999985441  01     101112222   2344445544  589998754332    245567777897


Q ss_pred             -Ceee-ecCC---CChhHHHHHHHh
Q 037779          116 -DYVD-ESEV---LTPADEENHINK  135 (310)
Q Consensus       116 -d~v~-~~~~---~~~~~~~~~~~~  135 (310)
                       |+++ .+..   .+.+.+.+.++.
T Consensus       104 ~davlv~~P~y~~~s~~~l~~~f~~  128 (311)
T 3h5d_A          104 FAAGLAIVPYYNKPSQEGMYQHFKA  128 (311)
T ss_dssp             CSEEEEECCCSSCCCHHHHHHHHHH
T ss_pred             CcEEEEcCCCCCCCCHHHHHHHHHH
Confidence             9987 3322   234555555544

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}

Probab=90.25  E-value=3.4  Score=38.24  Aligned_cols=161  Identities=15%  Similarity=0.164  Sum_probs=88.3

Q ss_pred             cceEeecccc--------chHHHHHHHHcCCCeeeecCC-CChhHHHHHHHhcCCCCcEEeec-CCHHHHHHHHHhCCCE
Q 037779           93 IPVMAKARIG--------HFVEAQILEAIGVDYVDESEV-LTPADEENHINKHNFRVPFVCGC-RNLGESLRRIREGAAM  162 (310)
Q Consensus        93 lPv~~kd~i~--------~~~~~~~~~~aGad~v~~~~~-~~~~~~~~~~~~~~~~l~v~~~v-~t~~ea~~a~~~Gad~  162 (310)
                      -|+.++....        +..++..+.++|+|.|-.+-. ....+.+..+++. ..+|+++++ -+...+..+++.|+|.
T Consensus        30 ~Pi~VQSMtnt~T~D~~atv~Qi~~l~~aG~diVRvavp~~~~a~al~~I~~~-~~vPlvaDiHf~~~lal~a~e~G~dk  108 (366)
T 3noy_A           30 APIVVQSMTSTKTHDVEATLNQIKRLYEAGCEIVRVAVPHKEDVEALEEIVKK-SPMPVIADIHFAPSYAFLSMEKGVHG  108 (366)
T ss_dssp             SCCEEEEECCSCTTCHHHHHHHHHHHHHTTCCEEEEECCSHHHHHHHHHHHHH-CSSCEEEECCSCHHHHHHHHHTTCSE
T ss_pred             CcEEEEEecCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHhc-CCCCEEEeCCCCHHHHHHHHHhCCCe
Confidence            4666665443        235778888999999974321 1223444455443 569999997 5888999999999999


Q ss_pred             EEEe-cCCCC-CchHHHHHHHHHhhcceec---ccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCC-HH
Q 037779          163 IRTK-GEAGT-GNIVEAVRHVRSVMGDIRV---LRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVAT-PA  236 (310)
Q Consensus       163 I~v~-g~~~~-~~~~~~~~~~~~~~~~~~~---l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t-~~  236 (310)
                      +.+| |-.+. ..+.+.++.+++...-+|.   ...++              .+++...-.  ..|     ++=+.| .+
T Consensus       109 lRINPGNig~~~~~~~vv~~ak~~~~piRIGvN~GSL~--------------~~ll~~yg~--~~~-----eamVeSAl~  167 (366)
T 3noy_A          109 IRINPGNIGKEEIVREIVEEAKRRGVAVRIGVNSGSLE--------------KDLLEKYGY--PSA-----EALAESALR  167 (366)
T ss_dssp             EEECHHHHSCHHHHHHHHHHHHHHTCEEEEEEEGGGCC--------------HHHHHHHSS--CCH-----HHHHHHHHH
T ss_pred             EEECCcccCchhHHHHHHHHHHHcCCCEEEecCCcCCC--------------HHHHHhcCC--CCH-----HHHHHHHHH
Confidence            9998 22111 1123444444444333331   11111              111111100  000     000111 23


Q ss_pred             HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCCh
Q 037779          237 DAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDP  278 (310)
Q Consensus       237 di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~  278 (310)
                      .++.+-+.|++-+++.   +++.|+..+++.++..-+...-|
T Consensus       168 ~~~~~e~~gf~~iviS---~K~S~v~~~i~ayr~la~~~dyP  206 (366)
T 3noy_A          168 WSEKFEKWGFTNYKVS---IKGSDVLQNVRANLIFAERTDVP  206 (366)
T ss_dssp             HHHHHHHTTCCCEEEE---EECSSHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHhCCCCeEEEe---eecCChHHHHHHHHHHHhccCCC
Confidence            4455556788777743   45567888888877776665444

>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A

Probab=90.10  E-value=1.7  Score=39.54  Aligned_cols=54  Identities=15%  Similarity=0.234  Sum_probs=35.6

Q ss_pred             CCCCEEEEccCCCCCHHHH---HHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          220 GRLPVVHFAAGGVATPADA---AMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       220 ~~iPVv~ia~GGI~t~~di---~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      .++||++ -.|+.++.+.+   +.+.++|||++++..-.|..++.....+-|....++
T Consensus        91 grvpVia-Gvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a  147 (314)
T 3qze_A           91 GRIPVIA-GTGANSTREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEA  147 (314)
T ss_dssp             TSSCEEE-ECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHH
T ss_pred             CCCcEEE-eCCCcCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh
Confidence            4789963 44554443333   334468999999999999888776665555555444

>3gdm_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, K93R mutant, lyase, phosphoprotein; 1.60A {Saccharomyces cerevisiae} SCOP: c.1.2.3 PDB: 3gdl_A* 3gdk_A* 3gdt_A* 3gdr_A* 1dqw_A 1dqx_A*

Probab=90.08  E-value=0.34  Score=43.35  Aligned_cols=39  Identities=23%  Similarity=0.361  Sum_probs=32.8

Q ss_pred             HHHHHHHcCCCEEEEcccccc-CCCHHHHHHHHHHH-HHcC
Q 037779          237 DAAMMMQLGCDGVFVGSGVFK-SGDPVRRARAIVQA-VTNY  275 (310)
Q Consensus       237 di~~~~~~GadgV~VGsai~~-~~dp~~~~~~~~~~-~~~~  275 (310)
                      +-.++++.|+|-++||+.|++ ++||.+.++++++. +++|
T Consensus       219 TP~~Ai~~GaD~iVVGRpI~~~a~dP~~aa~~i~~~~w~ay  259 (267)
T 3gdm_A          219 TVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRKAGWEAY  259 (267)
T ss_dssp             EHHHHHHTTCSEEEECGGGTSTTCCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHcCCCEEEEChhhccCCCCHHHHHHHHHHHHHHHH
Confidence            355677999999999999999 99999999998765 5544

>3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain, orotidine 5'-monophosphate decarboxylase, human, 5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens} PDB: 3bvj_A* 3mw7_A* 4hib_A* 4hkp_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A*

Probab=90.03  E-value=0.21  Score=45.66  Aligned_cols=38  Identities=24%  Similarity=0.424  Sum_probs=32.5

Q ss_pred             HHHHH-HcCCCEEEEccccccCCCHHHHHHHHHHH-HHcC
Q 037779          238 AAMMM-QLGCDGVFVGSGVFKSGDPVRRARAIVQA-VTNY  275 (310)
Q Consensus       238 i~~~~-~~GadgV~VGsai~~~~dp~~~~~~~~~~-~~~~  275 (310)
                      -.+++ +.|+|-++||+.|++++||.+.++++++. |++|
T Consensus       267 P~~Ai~~~GaD~iVVGRpIt~A~dP~~aa~~i~~~~w~ay  306 (312)
T 3g3d_A          267 PQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRKAAWEAY  306 (312)
T ss_dssp             HHHHHHTTCCSEEEESHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCEEEEChhhcCCCCHHHHHHHHHHHHHHHH
Confidence            56777 89999999999999999999999998765 5544

>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0

Probab=90.03  E-value=2.1  Score=38.53  Aligned_cols=63  Identities=11%  Similarity=0.102  Sum_probs=38.8

Q ss_pred             HHHHHHHhc--CCCCEEEEccCCCCCHHHH---HHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          211 DLVMQTKQL--GRLPVVHFAAGGVATPADA---AMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di---~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      ++++.+.+.  .++||++ -.|+.++.+.+   +.+.++|||++++..-.|..++.....+-|....++
T Consensus        64 ~v~~~~~~~~~grvpvia-Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a  131 (297)
T 3flu_A           64 AVIEAVVKHVAKRVPVIA-GTGANNTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEA  131 (297)
T ss_dssp             HHHHHHHHHHTTSSCEEE-ECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCcEEE-eCCCcCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh
Confidence            344444432  4789963 34555443333   344468999999999998877776655555554444

>3th6_A Triosephosphate isomerase; alpha/beta barrel, embryogenesis, glycolysis; 2.40A {Rhipicephalus microplus}

Probab=89.90  E-value=2.3  Score=37.51  Aligned_cols=35  Identities=20%  Similarity=0.390  Sum_probs=29.2

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccC
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKS  258 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~  258 (310)
                      .++|  +..|++ +++++.+++. .++||++||++-.++
T Consensus       203 ~vrI--lYGGSV-~~~N~~~l~~~~diDG~LVGgASL~~  238 (249)
T 3th6_A          203 KVRI--QYGGSV-NAGNCKELGRKPDIDGFLVGGASLKP  238 (249)
T ss_dssp             HCCE--EECSCC-CTTTHHHHHTSTTCCEEEECGGGGST
T ss_pred             cccE--EEcCcc-CHhHHHHHhcCCCCCEEEeehHhhhH
Confidence            3788  579999 5899888885 699999999998874

>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}

Probab=89.86  E-value=11  Score=34.18  Aligned_cols=85  Identities=14%  Similarity=0.108  Sum_probs=49.5

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCC----CCCC-------hHHHHHHHhhcCcceEeeccccchHHHHHHHHcC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVA----RMSD-------PQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIG  114 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~----~~~~-------~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aG  114 (310)
                      +.|+.+.+.||+.| +++..+|-+    |+.    ....       ...++.+++.+++|+++-.+  ..+.++.+.++|
T Consensus        53 ~~A~~~v~~GAdII-DIGgeSTrP----ga~~~~~~V~~~eE~~Rv~pvI~~l~~~~~vpISIDT~--~~~Va~aAl~aG  125 (314)
T 3tr9_A           53 RTAEKMVDEGADIL-DIGGEATNP----FVDIKTDSPSTQIELDRLLPVIDAIKKRFPQLISVDTS--RPRVMREAVNTG  125 (314)
T ss_dssp             HHHHHHHHTTCSEE-EEECCCSCT----TC-----CHHHHHHHHHHHHHHHHHHHHCCSEEEEECS--CHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCEE-EECCCCCCC----CcccccCCCCHHHHHHHHHHHHHHHHhhCCCeEEEeCC--CHHHHHHHHHcC
Confidence            66999999999988 664211111    110    0000       12345556667889987755  335677888899


Q ss_pred             CCeeeecCCCChhHHHHHHHhcC
Q 037779          115 VDYVDESEVLTPADEENHINKHN  137 (310)
Q Consensus       115 ad~v~~~~~~~~~~~~~~~~~~~  137 (310)
                      ++.|-.......++....+.+.+
T Consensus       126 a~iINDVsg~~~~~m~~v~a~~g  148 (314)
T 3tr9_A          126 ADMINDQRALQLDDALTTVSALK  148 (314)
T ss_dssp             CCEEEETTTTCSTTHHHHHHHHT
T ss_pred             CCEEEECCCCCchHHHHHHHHhC
Confidence            99987322323345555555544

>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*

Probab=89.82  E-value=10  Score=33.75  Aligned_cols=82  Identities=9%  Similarity=0.077  Sum_probs=45.8

Q ss_pred             HHHHHHHH-cCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCC
Q 037779           46 EQARIAEE-AGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGV  115 (310)
Q Consensus        46 ~~a~~~~~-~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGa  115 (310)
                      +.++.+.+ .|++++..+.  .|.+     +..+...   +.++.+.+.+  ++||++...-..    .+.++.+.++||
T Consensus        28 ~lv~~li~~~Gv~gl~~~G--ttGE-----~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Ga  100 (293)
T 1f6k_A           28 QIIRHNIDKMKVDGLYVGG--STGE-----NFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATELGY  100 (293)
T ss_dssp             HHHHHHHHTSCCSEEEESS--GGGT-----GGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhhCCCcEEEeCc--cccc-----hhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHhcCC
Confidence            67888899 9999985441  0100     1112222   2344444443  589988754432    245567778999


Q ss_pred             Ceee-ecCC---CChhHHHHHHH
Q 037779          116 DYVD-ESEV---LTPADEENHIN  134 (310)
Q Consensus       116 d~v~-~~~~---~~~~~~~~~~~  134 (310)
                      |+++ .+..   .+.+.+.+.++
T Consensus       101 davlv~~P~y~~~~~~~l~~~f~  123 (293)
T 1f6k_A          101 DCLSAVTPFYYKFSFPEIKHYYD  123 (293)
T ss_dssp             SEEEEECCCSSCCCHHHHHHHHH
T ss_pred             CEEEECCCCCCCCCHHHHHHHHH
Confidence            9987 3322   23444554443

>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}

Probab=89.82  E-value=1.7  Score=38.89  Aligned_cols=63  Identities=14%  Similarity=0.242  Sum_probs=39.0

Q ss_pred             HHHHHHHhc--CCCCEEEEccCCCCCHHHH---HHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          211 DLVMQTKQL--GRLPVVHFAAGGVATPADA---AMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di---~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      ++++.+.+.  .++||+ +-.|+.++.+.+   +.+.++|||++++..-.|..++.....+-|....++
T Consensus        57 ~v~~~~~~~~~gr~pvi-aGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a  124 (289)
T 2yxg_A           57 KVIEKVVDVVNGRVQVI-AGAGSNCTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAES  124 (289)
T ss_dssp             HHHHHHHHHHTTSSEEE-EECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCcEE-EeCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh
Confidence            344444432  468996 345555444433   334457999999999999877776665555554444

>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}

Probab=89.73  E-value=2  Score=38.88  Aligned_cols=62  Identities=13%  Similarity=0.159  Sum_probs=38.4

Q ss_pred             HHHHHHhc--CCCCEEEEccCCCCCHHHH---HHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          212 LVMQTKQL--GRLPVVHFAAGGVATPADA---AMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       212 l~~~i~~~--~~iPVv~ia~GGI~t~~di---~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      +++.+.+.  .++||+ +-.|+.++.+.+   +.+.++|||++++..-.|..++.....+-|....++
T Consensus        74 v~~~~~~~~~grvpvi-aGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a  140 (304)
T 3cpr_A           74 LLKAVREEVGDRAKLI-AGVGTNNTRTSVELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAA  140 (304)
T ss_dssp             HHHHHHHHHTTTSEEE-EECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcEE-ecCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh
Confidence            44444432  468986 344555444433   334457999999999999877766655555554444

>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1

Probab=89.67  E-value=0.58  Score=44.87  Aligned_cols=91  Identities=16%  Similarity=0.163  Sum_probs=59.4

Q ss_pred             cc-ceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccc--hhh----hcCC---CC-CCCChHHHHHHHhhc--Ccc
Q 037779           28 VG-LAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPA--DIR----AQGG---VA-RMSDPQLIKQIKSSV--TIP   94 (310)
Q Consensus        28 ~~-~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~--d~r----~~~G---~~-~~~~~~~i~~i~~~~--~lP   94 (310)
                      .| +..+++.+. ....-.++|+.++++|+++|+..|....  +..    ..+|   .. .....+.++++++.+  ++|
T Consensus       297 ~P~V~vKispd~-~~ed~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iP  375 (443)
T 1tv5_A          297 KPLVFVKLAPDL-NQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIP  375 (443)
T ss_dssp             CCEEEEEECSCC-CHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSC
T ss_pred             CCeEEEEeCCCC-CHHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCc
Confidence            46 677776542 1001146799999999999966652110  110    0111   00 001246788999988  899


Q ss_pred             eEeeccccchHHHHHHHHcCCCeee
Q 037779           95 VMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        95 v~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      |+....|.+.+++.....+|||.|-
T Consensus       376 VIg~GGI~s~~DA~e~l~aGAd~Vq  400 (443)
T 1tv5_A          376 IIASGGIFSGLDALEKIEAGASVCQ  400 (443)
T ss_dssp             EEEESSCCSHHHHHHHHHTTEEEEE
T ss_pred             EEEECCCCCHHHHHHHHHcCCCEEE
Confidence            9999999888888888889999996

>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A

Probab=89.65  E-value=2.2  Score=38.26  Aligned_cols=63  Identities=11%  Similarity=0.219  Sum_probs=38.9

Q ss_pred             HHHHHHHhc--CCCCEEEEccCCCCCHHHH---HHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          211 DLVMQTKQL--GRLPVVHFAAGGVATPADA---AMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di---~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      ++++.+.+.  .++||++ -.|+.++.+.+   +.+.++|+|++++....|..++.....+-|....++
T Consensus        58 ~v~~~~~~~~~gr~pvia-Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a  125 (291)
T 3tak_A           58 QVIKEIIRVANKRIPIIA-GTGANSTREAIELTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEA  125 (291)
T ss_dssp             HHHHHHHHHHTTSSCEEE-ECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCeEEE-eCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh
Confidence            344444442  4789953 34444433333   334467999999999998887776665555555444

>3eww_A Ompdecase, orotidine-5'-phosphate decarboxylase; TIM barrel, unusual catalysis, disease mutati glycosyltransferase, lyase, multifunctional enzyme; HET: U1P; 1.10A {Homo sapiens} PDB: 2qcl_A* 2qcm_A* 3ewu_A* 2qcf_A* 3ex6_A* 3ex4_A* 2qcd_A* 2qcc_A 2qcg_A* 2qch_A* 2qcn_A* 2qce_A* 3ewz_A* 3ex1_A* 3ex2_A* 3ex3_A* 3ex0_A* 3ex5_A* 3l0k_A* 3l0n_A* ...

Probab=89.63  E-value=0.26  Score=43.89  Aligned_cols=39  Identities=23%  Similarity=0.417  Sum_probs=33.0

Q ss_pred             HHHHHH-HcCCCEEEEccccccCCCHHHHHHHHHHH-HHcC
Q 037779          237 DAAMMM-QLGCDGVFVGSGVFKSGDPVRRARAIVQA-VTNY  275 (310)
Q Consensus       237 di~~~~-~~GadgV~VGsai~~~~dp~~~~~~~~~~-~~~~  275 (310)
                      +..+++ +.|+|.++||+.|++++||.+.++++++. |++|
T Consensus       214 tp~~a~~~aGad~iVvGR~I~~a~dp~~a~~~~~~~~w~ay  254 (260)
T 3eww_A          214 SPQEVIGKRGSDIIIVGRGIISAADRLEAAEMYRKAAWEAY  254 (260)
T ss_dssp             CHHHHHTTSCCSEEEESHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHhcCCCEEEEChhhcCCCCHHHHHHHHHHHHHHHH
Confidence            366778 89999999999999999999999998754 5544

>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A

Probab=89.59  E-value=11  Score=33.80  Aligned_cols=92  Identities=18%  Similarity=0.195  Sum_probs=51.1

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCC---hHHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSD---PQLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~---~~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGad  116 (310)
                      +.++.+.+.|++++..+-  .|.+     +..+..   .+.++.+.+.+  ++||++...-..    .+.++.+.++|||
T Consensus        37 ~lv~~li~~Gv~gl~v~G--tTGE-----~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Gad  109 (306)
T 1o5k_A           37 RLVRYQLENGVNALIVLG--TTGE-----SPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGAN  109 (306)
T ss_dssp             HHHHHHHHTTCCEEEESS--GGGT-----GGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHcCCCEEEeCc--cccc-----hhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCCC
Confidence            678888999999985441  0100     011211   22344444443  589988754432    2455677789999


Q ss_pred             eee-ecCC---CChhHHHHHHHh--cCCCCcEEe
Q 037779          117 YVD-ESEV---LTPADEENHINK--HNFRVPFVC  144 (310)
Q Consensus       117 ~v~-~~~~---~~~~~~~~~~~~--~~~~l~v~~  144 (310)
                      +++ .+..   .+.+.+.+.++.  ...++++++
T Consensus       110 avlv~~P~y~~~s~~~l~~~f~~va~a~~lPiil  143 (306)
T 1o5k_A          110 GVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVV  143 (306)
T ss_dssp             EEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEE
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEE
Confidence            988 3322   245556665554  223455443

>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}

Probab=89.58  E-value=1.8  Score=38.86  Aligned_cols=63  Identities=19%  Similarity=0.259  Sum_probs=39.0

Q ss_pred             HHHHHHHhc--CCCCEEEEccCCCCCHHHH---HHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          211 DLVMQTKQL--GRLPVVHFAAGGVATPADA---AMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di---~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      ++++.+.+.  .++||+ +-.|+.++.+.+   +.+.++|||++++..-.|..++.....+-|....++
T Consensus        57 ~v~~~~~~~~~grvpvi-aGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a  124 (294)
T 2ehh_A           57 KVIEFAVKRAAGRIKVI-AGTGGNATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQE  124 (294)
T ss_dssp             HHHHHHHHHHTTSSEEE-EECCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCcEE-EecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh
Confidence            344444432  468986 345555444443   333467999999999999877776655555554443

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=89.43  E-value=0.56  Score=42.41  Aligned_cols=90  Identities=13%  Similarity=0.051  Sum_probs=57.1

Q ss_pred             ccceeeecCCccccCCC-HHHHHHHHHcC-CcEEEeccccc----chhh----------hcC---CCCC-CCChHHHHHH
Q 037779           28 VGLAQMLRGGVIMDVVT-PEQARIAEEAG-ACAVMALERVP----ADIR----------AQG---GVAR-MSDPQLIKQI   87 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~~~-~~~a~~~~~~G-a~~I~~l~~~~----~d~r----------~~~---G~~~-~~~~~~i~~i   87 (310)
                      .|+..+++.+.  +..+ .++++.+.++| +++|...|...    .|.+          .++   |... ....+.++++
T Consensus       161 ~Pv~vK~~~~~--~~~~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v  238 (314)
T 2e6f_A          161 LPFGVKMPPYF--DIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAF  238 (314)
T ss_dssp             SCEEEEECCCC--CHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHH
T ss_pred             CCEEEEECCCC--CHHHHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHH
Confidence            45666666542  1111 24589999999 99985444210    1100          111   1100 0124678889


Q ss_pred             Hhhc-CcceEeeccccchHHHHHHHHcCCCeee
Q 037779           88 KSSV-TIPVMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        88 ~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      ++.+ ++||+....+.+.+++..+..+|||.|-
T Consensus       239 ~~~~~~ipvi~~GGI~~~~da~~~l~~GAd~V~  271 (314)
T 2e6f_A          239 YRRCPDKLVFGCGGVYSGEDAFLHILAGASMVQ  271 (314)
T ss_dssp             HHHCTTSEEEEESSCCSHHHHHHHHHHTCSSEE
T ss_pred             HHhcCCCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence            9888 9999999999877788777789999986

>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}

Probab=89.41  E-value=1.7  Score=39.50  Aligned_cols=63  Identities=14%  Similarity=0.131  Sum_probs=39.6

Q ss_pred             HHHHHHHhc--CCCCEEEEccCCCCCHHHHH---HHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          211 DLVMQTKQL--GRLPVVHFAAGGVATPADAA---MMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di~---~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      ++++.+.+.  .++||++ -.|+-++.+.+.   .+.++|||++++..-.|..++.....+-|....++
T Consensus        81 ~v~~~~v~~~~grvpVia-Gvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a  148 (315)
T 3na8_A           81 EVVDFTLKTVAHRVPTIV-SVSDLTTAKTVRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEA  148 (315)
T ss_dssp             HHHHHHHHHHTTSSCBEE-ECCCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCcEEE-ecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh
Confidence            344444442  4789953 344454433333   44468999999999999888776666555555554

>4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A*

Probab=89.31  E-value=0.26  Score=46.62  Aligned_cols=50  Identities=18%  Similarity=0.060  Sum_probs=37.3

Q ss_pred             HHHhcCCCCEEEEccCCCCCHHHHHHHH-HcCCCEEEEccccccCCCHHHHHH
Q 037779          215 QTKQLGRLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       215 ~i~~~~~iPVv~ia~GGI~t~~di~~~~-~~GadgV~VGsai~~~~dp~~~~~  266 (310)
                      .+++..++||  |+.|||.+..++.+.+ +-++|.|.+|+.++..+|...+++
T Consensus       312 ~ir~~~~~pv--i~~G~~~~~~~~~~~~~~~~aDlV~~gR~~iadPdl~~k~~  362 (400)
T 4gbu_A          312 FVYSIWKGPV--IRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLE  362 (400)
T ss_dssp             HHHHHCCSCE--EEESSCTTCHHHHHHHTTSTTEEEECCHHHHHCTTHHHHHH
T ss_pred             HHHHHhCCCE--EEeCCCCChHHHHHHHHcCCCeEhHHHHHHHHCcHHHHHHH
Confidence            3455567899  5679998766655444 568999999999999888765543

>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A

Probab=89.30  E-value=1.9  Score=39.03  Aligned_cols=63  Identities=22%  Similarity=0.321  Sum_probs=38.9

Q ss_pred             HHHHHHHhc--CCCCEEEEccCCCCCHHHH---HHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          211 DLVMQTKQL--GRLPVVHFAAGGVATPADA---AMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di---~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      ++++.+.+.  .++||+ +-.|+.++.+.+   +.+.++|||++++..-.|..++.....+-|....++
T Consensus        69 ~vi~~~~~~~~grvpVi-aGvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a  136 (306)
T 1o5k_A           69 KLVSRTLEIVDGKIPVI-VGAGTNSTEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISER  136 (306)
T ss_dssp             HHHHHHHHHHTTSSCEE-EECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCCeEE-EcCCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh
Confidence            344444432  478996 344555444433   333457999999999999888776655555554443

>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}

Probab=89.28  E-value=1.9  Score=39.51  Aligned_cols=63  Identities=10%  Similarity=0.145  Sum_probs=39.1

Q ss_pred             HHHHHHHhc--CCCCEEEEccCCCCCHHHH---HHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          211 DLVMQTKQL--GRLPVVHFAAGGVATPADA---AMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di---~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      ++++.+.+.  .++||++ -.|+.++.+.+   +.+.++|||++++..-.|..++.....+-|....++
T Consensus        91 ~vi~~~ve~~~grvpVia-Gvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a  158 (332)
T 2r8w_A           91 RAIEAAATILRGRRTLMA-GIGALRTDEAVALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGA  158 (332)
T ss_dssp             HHHHHHHHHHTTSSEEEE-EECCSSHHHHHHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCcEEE-ecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh
Confidence            344444432  3689963 44555444433   334457999999999999887776655555554444

>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*

Probab=89.25  E-value=2.1  Score=39.49  Aligned_cols=63  Identities=19%  Similarity=0.247  Sum_probs=39.3

Q ss_pred             HHHHHHHhc--CCCCEEEEccCCCCCHHHHH---HHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          211 DLVMQTKQL--GRLPVVHFAAGGVATPADAA---MMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di~---~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      ++++.+.+.  .++||+ +-.|+.++.+.+.   .+.++|||++++..-.|..++.....+-|....++
T Consensus        88 ~vi~~~ve~~~grvpVi-aGvg~~st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a  155 (343)
T 2v9d_A           88 AIARFAIDHVDRRVPVL-IGTGGTNARETIELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADS  155 (343)
T ss_dssp             HHHHHHHHHHTTSSCEE-EECCSSCHHHHHHHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCCcEE-EecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh
Confidence            344444432  478996 3445554444333   33457999999999999888776666555555444

>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}

Probab=89.24  E-value=2.1  Score=39.00  Aligned_cols=63  Identities=17%  Similarity=0.213  Sum_probs=39.0

Q ss_pred             HHHHHHHhc--CCCCEEEEccCCCCCHHHH---HHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          211 DLVMQTKQL--GRLPVVHFAAGGVATPADA---AMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di---~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      ++++.+.+.  .++||++ -.|+-++.+.+   +.+.++|||++++..-.|..++.....+-|....++
T Consensus        79 ~v~~~~v~~~~grvpVia-Gvg~~st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a  146 (315)
T 3si9_A           79 RIIELCVEQVAKRVPVVA-GAGSNSTSEAVELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKA  146 (315)
T ss_dssp             HHHHHHHHHHTTSSCBEE-ECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCcEEE-eCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHc
Confidence            344444442  4789953 34444433333   344468999999999999888776665555554444

>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A

Probab=89.17  E-value=0.9  Score=39.60  Aligned_cols=42  Identities=17%  Similarity=0.131  Sum_probs=36.3

Q ss_pred             ChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeee-ecC
Q 037779           80 DPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVD-ESE  122 (310)
Q Consensus        80 ~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~  122 (310)
                      +.+.++++++.+ ++|+++..+|.+.++++.+. .|||.|. ++.
T Consensus       167 ~~~~i~~i~~~~~~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGSa  210 (228)
T 3vzx_A          167 DIEAVKKTKAVLETSTLFYGGGIKDAETAKQYA-EHADVIVVGNA  210 (228)
T ss_dssp             CHHHHHHHHHHCSSSEEEEESSCCSHHHHHHHH-TTCSEEEECTH
T ss_pred             CHHHHHHHHHhcCCCCEEEeCCCCCHHHHHHHH-hCCCEEEEChH
Confidence            699999999999 89999999998888887776 6999988 443

>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1

Probab=89.13  E-value=1  Score=42.43  Aligned_cols=32  Identities=19%  Similarity=0.382  Sum_probs=28.1

Q ss_pred             EEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          226 HFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       226 ~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                      ++++||| +.+++.++.+. +|.+.||+.++..+
T Consensus       271 I~aSggl-~~~~i~~l~~~-vD~~gvGt~l~~~~  302 (395)
T 2i14_A          271 IFVSGGL-DEEKIKEIVDV-VDAFGVGGAIASAK  302 (395)
T ss_dssp             EEEESSC-CHHHHHTTGGG-CSEEEECHHHHTCC
T ss_pred             EEEECCC-CHHHHHHHHHh-CCEEEeCcccCCCC
Confidence            3789999 69999999999 99999999887643

>2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7

Probab=89.11  E-value=6.9  Score=37.10  Aligned_cols=49  Identities=10%  Similarity=-0.121  Sum_probs=37.7

Q ss_pred             cHHHHHHHHhcCCCC-EEE--EccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          209 PYDLVMQTKQLGRLP-VVH--FAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       209 ~~~l~~~i~~~~~iP-Vv~--ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      +++.++.+.+..++| +|.  =...|+ +.++++++.+.|..-+=||+.+..+
T Consensus       236 d~e~l~~I~~~v~~P~LVle~HGgSg~-~~e~l~~~v~~Gi~kiNV~t~l~~a  287 (420)
T 2fiq_A          236 QPQEAQALAQWIENTRMVYEAHSTDYQ-TRTAYWELVRDHFAILKVGPALTFA  287 (420)
T ss_dssp             CGGGGHHHHHHHTTSSCEEEESCCTTC-CHHHHHHHHHTTEEEEEECHHHHHH
T ss_pred             CHHHHHHHHHhcCCCCEEEecCCCCCC-CHHHHHHHHHcCCCEEEECHHHHHH
Confidence            456667777766679 763  245677 5899999999999999999988763

>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A

Probab=89.09  E-value=2  Score=38.80  Aligned_cols=63  Identities=14%  Similarity=0.160  Sum_probs=39.3

Q ss_pred             HHHHHHHhc--CCCCEEEEccCCCCCHHHH---HHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          211 DLVMQTKQL--GRLPVVHFAAGGVATPADA---AMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di---~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      ++++.+.+.  .++||++ -.|+.++.+.+   +.+.++|||++++..-.|..++.....+-|....++
T Consensus        72 ~v~~~~~~~~~grvpvia-Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a  139 (304)
T 3l21_A           72 ELLRAVLEAVGDRARVIA-GAGTYDTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADA  139 (304)
T ss_dssp             HHHHHHHHHHTTTSEEEE-ECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHhCCCCeEEE-eCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh
Confidence            344444442  4789963 34555443333   334457999999999998888776666555555454

>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*

Probab=89.09  E-value=9.6  Score=33.24  Aligned_cols=191  Identities=14%  Similarity=0.128  Sum_probs=111.9

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-ecC-
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESE-  122 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~-  122 (310)
                      .+.|..++++||++|..- + ..|.|.-       ..++++.+++.++.|+=.-... +.+..+++.+.--+.+. .++ 
T Consensus        28 v~aA~~ae~aGAdgITvH-l-ReDrRHI-------~d~Dv~~L~~~~~~~lNlE~a~-t~emi~ia~~~kP~~vtLVPE~   97 (243)
T 1m5w_A           28 VQAAFIAEQAGADGITVH-L-REDRRHI-------TDRDVRILRQTLDTRMNLEMAV-TEEMLAIAVETKPHFCCLVPEK   97 (243)
T ss_dssp             HHHHHHHHTTTCSEEEEE-C-CTTCSSS-------CHHHHHHHHHHCSSEEEEEECS-SHHHHHHHHHHCCSEEEECCCC
T ss_pred             HHHHHHHHHcCCCEEEeC-C-CCCcccC-------CHHHHHHHHHhcCCCEEeccCC-CHHHHHHHHHcCCCEEEECCCC
Confidence            378999999999998432 1 1244443       3788999998887777332222 22566788888888876 332 


Q ss_pred             --------CCCh-------hHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcc
Q 037779          123 --------VLTP-------ADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGD  187 (310)
Q Consensus       123 --------~~~~-------~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~  187 (310)
                              .+..       ..+++.++..+..+-++++. +++.++.+.+.|+++|=.+    |+.+.++.         
T Consensus        98 r~e~TTegGldv~~~~~~l~~~i~~L~~~GIrVSLFIDp-d~~qi~aA~~~GA~~IELh----TG~Ya~a~---------  163 (243)
T 1m5w_A           98 RQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDA-DEEQIKAAAEVGAPFIEIH----TGCYADAK---------  163 (243)
T ss_dssp             SSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEECS-CHHHHHHHHHTTCSEEEEE----CHHHHHCC---------
T ss_pred             CCCcCCCcchhHHhhHHHHHHHHHHHHHCCCEEEEEeCC-CHHHHHHHHHhCcCEEEEe----chhhhcCC---------
Confidence                    1111       24455565556556667763 7788889999999999876    11111100         


Q ss_pred             eecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccCC---CHHH
Q 037779          188 IRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSG---DPVR  263 (310)
Q Consensus       188 ~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~~---dp~~  263 (310)
                          .....+.      .+..-.+.... .....+-|  =|.-|+ +.+++..+.+. +..-+-+|-+|+..-   -..+
T Consensus       164 ----~~~~~~~------el~~i~~aa~~-A~~lGL~V--nAGHgL-~y~Nv~~ia~ip~i~ElnIGHaiia~Al~~Gl~~  229 (243)
T 1m5w_A          164 ----TDAEQAQ------ELARIAKAATF-AASLGLKV--NAGHGL-TYHNVKAIAAIPEMHELNIGHAIIGRAVMTGLKD  229 (243)
T ss_dssp             ----SHHHHHH------HHHHHHHHHHH-HHHTTCEE--EEESSC-CTTTHHHHHTCTTEEEEEECHHHHHHHHHHCHHH
T ss_pred             ----CchhHHH------HHHHHHHHHHH-HHHcCCEE--ecCCCC-CHHHHHHHhhCCCCeEEccCHHHHHHHHHHhHHH
Confidence                0000000      00000001111 11134566  568899 58999988764 788899998877521   1345


Q ss_pred             HHHHHHHHHH
Q 037779          264 RARAIVQAVT  273 (310)
Q Consensus       264 ~~~~~~~~~~  273 (310)
                      ++++|++.+.
T Consensus       230 aV~~m~~~~~  239 (243)
T 1m5w_A          230 AVAEMKRLML  239 (243)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666666654

>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}

Probab=89.04  E-value=1.9  Score=38.93  Aligned_cols=62  Identities=19%  Similarity=0.250  Sum_probs=38.5

Q ss_pred             HHHHHHhc--CCCCEEEEccCCCCCHHHH---HHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          212 LVMQTKQL--GRLPVVHFAAGGVATPADA---AMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       212 l~~~i~~~--~~iPVv~ia~GGI~t~~di---~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      +++.+.+.  .++||+ +-.|+.++.+.+   +.+.++|||++++..-.|..++.....+-|....++
T Consensus        58 v~~~~~~~~~grvpvi-aGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a  124 (297)
T 2rfg_A           58 VVALVAEQAQGRVPVI-AGAGSNNPVEAVRYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDA  124 (297)
T ss_dssp             HHHHHHHHHTTSSCBE-EECCCSSHHHHHHHHHHHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEE-EccCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh
Confidence            44444432  468996 344555444433   334457999999999999877776665555554443

>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A

Probab=89.03  E-value=2.6  Score=37.80  Aligned_cols=63  Identities=22%  Similarity=0.317  Sum_probs=38.6

Q ss_pred             HHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHH---HcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          211 DLVMQTKQL--GRLPVVHFAAGGVATPADAAMMM---QLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~---~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      ++++.+.+.  .++||+ +-.|+.++.+.+....   ++|||++++..-.|..++.....+-|....++
T Consensus        58 ~v~~~~~~~~~gr~pvi-aGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a  125 (292)
T 2ojp_A           58 DVVMMTLDLADGRIPVI-AGTGANATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH  125 (292)
T ss_dssp             HHHHHHHHHHTTSSCEE-EECCCSSHHHHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCCcEE-EecCCccHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh
Confidence            344444432  468996 3455554444443333   46999999999999887776655555554443

>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}

Probab=88.98  E-value=4.7  Score=36.74  Aligned_cols=112  Identities=20%  Similarity=0.176  Sum_probs=65.2

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccc-----------------
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGH-----------------  103 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~-----------------  103 (310)
                      +..+++.++++.++|++.|       .|+..+.       .+.+..+.+.++.|+++...-+.                 
T Consensus       111 DT~~~~Va~aAl~aGa~iI-------NDVsg~~-------~~~m~~v~a~~g~~vVlMh~~G~P~tmq~~~~ydvv~ev~  176 (314)
T 3tr9_A          111 DTSRPRVMREAVNTGADMI-------NDQRALQ-------LDDALTTVSALKTPVCLMHFPSETRKPGSTTHFYFLQSVK  176 (314)
T ss_dssp             ECSCHHHHHHHHHHTCCEE-------EETTTTC-------STTHHHHHHHHTCCEEEECCCCTTCCTTSSCHHHHHHHHH
T ss_pred             eCCCHHHHHHHHHcCCCEE-------EECCCCC-------chHHHHHHHHhCCeEEEECCCCCCcccccccccchHHHHH
Confidence            4455899999999999987       3443221       12344555567888887432221                 


Q ss_pred             ---hHHHHHHHHcCCC---eeeec------CCCChh---HHHHHHHh-cCCCCcEEeecCC-----------HH------
Q 037779          104 ---FVEAQILEAIGVD---YVDES------EVLTPA---DEENHINK-HNFRVPFVCGCRN-----------LG------  150 (310)
Q Consensus       104 ---~~~~~~~~~aGad---~v~~~------~~~~~~---~~~~~~~~-~~~~l~v~~~v~t-----------~~------  150 (310)
                         .+.++.+.++|.+   .++.+      ...+..   ++.+.+.. +.++.++++++..           ++      
T Consensus       177 ~~l~~~i~~a~~~GI~~~~IilDPG~G~~~F~Kt~~~n~~lL~~l~~l~~lg~PvL~G~SRKsfig~~~~~~~~~R~~~t  256 (314)
T 3tr9_A          177 KELQESIQRCKKAGISEDRIIIDPGFGQGNYGKNVSENFYLLNKLPEFVAMGLPVLSGWSRKSMIGDVLNQPPENRLFGS  256 (314)
T ss_dssp             HHHHHHHHHHHHTTCCGGGEEEECCCCSGGGCCCHHHHHHHHHTTHHHHTTSSCBEECCTTCHHHHHHHTCCGGGCHHHH
T ss_pred             HHHHHHHHHHHHcCCCHhHEEEeCCCCchhhcCCHHHHHHHHHHHHHHhcCCCCEEEEechhhhhhhhcCCChHHhHHHH
Confidence               1345677779996   44422      223333   23333333 3567888887732           11      


Q ss_pred             --HHHHHHHhCCCEEEEe
Q 037779          151 --ESLRRIREGAAMIRTK  166 (310)
Q Consensus       151 --ea~~a~~~Gad~I~v~  166 (310)
                        -...+...|++++.++
T Consensus       257 ~a~~~~a~~~Ga~IvRvH  274 (314)
T 3tr9_A          257 IAADVLAVYHGASIIRTH  274 (314)
T ss_dssp             HHHHHHHHHTTCSEEEES
T ss_pred             HHHHHHHHHcCCcEEEeC
Confidence              1234456899999997

>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A

Probab=88.89  E-value=12  Score=33.29  Aligned_cols=82  Identities=15%  Similarity=0.187  Sum_probs=46.2

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGad  116 (310)
                      +.++.+.+.|++++..+-  .|.+     +..+...   +.++.+.+.+  ++||++...-..    .+.++.+.++|||
T Consensus        27 ~lv~~li~~Gv~gl~v~G--ttGE-----~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gad   99 (292)
T 3daq_A           27 AHVNFLLENNAQAIIVNG--TTAE-----SPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGAD   99 (292)
T ss_dssp             HHHHHHHHTTCCEEEESS--GGGT-----GGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHcCCCEEEECc--cccc-----cccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCCC
Confidence            678889999999985441  0100     1112112   2344444443  589998754332    2455677789999


Q ss_pred             eee-ecCC---CChhHHHHHHH
Q 037779          117 YVD-ESEV---LTPADEENHIN  134 (310)
Q Consensus       117 ~v~-~~~~---~~~~~~~~~~~  134 (310)
                      +++ .+..   .+.+.+.+.++
T Consensus       100 avlv~~P~y~~~~~~~l~~~f~  121 (292)
T 3daq_A          100 AIMLITPYYNKTNQRGLVKHFE  121 (292)
T ss_dssp             EEEEECCCSSCCCHHHHHHHHH
T ss_pred             EEEECCCCCCCCCHHHHHHHHH
Confidence            988 3322   23444555444

>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*

Probab=88.84  E-value=3  Score=39.00  Aligned_cols=116  Identities=15%  Similarity=0.080  Sum_probs=69.3

Q ss_pred             HHHHHHH-HcCCcEEEecccc----------cc-h---hhhcCC-CCCCC----ChHHHHHHHhhcC-cceEeecccc--
Q 037779           46 EQARIAE-EAGACAVMALERV----------PA-D---IRAQGG-VARMS----DPQLIKQIKSSVT-IPVMAKARIG--  102 (310)
Q Consensus        46 ~~a~~~~-~~Ga~~I~~l~~~----------~~-d---~r~~~G-~~~~~----~~~~i~~i~~~~~-lPv~~kd~i~--  102 (310)
                      +.|+.+. ++|+++| .+|..          |. .   ...++| +. .+    ..+.++++|+.++ -||.++....  
T Consensus       178 ~AA~~a~~~aGfDgV-Eih~a~GYLl~QFlsp~~N~R~~D~yGG~sl-enR~r~~~eiv~aVr~avg~~~v~vRis~~~~  255 (379)
T 3aty_A          178 EGAKNAIFKAGFDGV-EIHGANGYLLDAFFRESSNKRQSGPYAGTTI-DTRCQLIYDVTKSVCDAVGSDRVGLRISPLNG  255 (379)
T ss_dssp             HHHHHHHHTSCCSEE-EEEECTTSHHHHHHSTTTCCCCSSTTCTTSH-HHHHHHHHHHHHHHHHHHCGGGEEEEECTTCC
T ss_pred             HHHHHHHHhcCCCEE-EEcCcCchHHhhccCCCCCccccCCCCccCh-hhhHHHHHHHHHHHHHhcCCCeEEEEECcccc
Confidence            4577888 9999998 55410          11 0   123455 41 11    1344667777764 3787752221  


Q ss_pred             --------c----hHHHHHHHHcCCCeeeecCCC-----ChhHHHHHHHhcCCCCcEEe--ecCCHHHHHHHHHhC-CCE
Q 037779          103 --------H----FVEAQILEAIGVDYVDESEVL-----TPADEENHINKHNFRVPFVC--GCRNLGESLRRIREG-AAM  162 (310)
Q Consensus       103 --------~----~~~~~~~~~aGad~v~~~~~~-----~~~~~~~~~~~~~~~l~v~~--~v~t~~ea~~a~~~G-ad~  162 (310)
                              .    ...++.+.++|+|+++.+...     .+.+ .+.+++. .++++++  .+ |.++++.+++.| +|+
T Consensus       256 ~~~~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~~~~~~~-~~~ir~~-~~iPvi~~G~i-t~~~a~~~l~~g~aD~  332 (379)
T 3aty_A          256 VHGMIDSNPEALTKHLCKKIEPLSLAYLHYLRGDMVNQQIGDV-VAWVRGS-YSGVKISNLRY-DFEEADQQIREGKVDA  332 (379)
T ss_dssp             GGGCCCSCHHHHHHHHHHHHGGGCCSEEEEECSCTTSCCCCCH-HHHHHTT-CCSCEEEESSC-CHHHHHHHHHTTSCSE
T ss_pred             cccCCCCCCHHHHHHHHHHHHHhCCCEEEEcCCCcCCCCccHH-HHHHHHH-CCCcEEEECCC-CHHHHHHHHHcCCCeE
Confidence                    1    123466677999999854311     1224 5556553 3556555  36 899999999887 899


Q ss_pred             EEEe
Q 037779          163 IRTK  166 (310)
Q Consensus       163 I~v~  166 (310)
                      |.+.
T Consensus       333 V~ig  336 (379)
T 3aty_A          333 VAFG  336 (379)
T ss_dssp             EEES
T ss_pred             EEec
Confidence            9985

>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*

Probab=88.83  E-value=0.73  Score=43.78  Aligned_cols=92  Identities=16%  Similarity=0.147  Sum_probs=60.2

Q ss_pred             cc-ceeeecCCccccCCCHHHHHHHHHcCCcEEEeccccc--chhhh----cC---CCC-CCCChHHHHHHHhhc--Ccc
Q 037779           28 VG-LAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVP--ADIRA----QG---GVA-RMSDPQLIKQIKSSV--TIP   94 (310)
Q Consensus        28 ~~-~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~--~d~r~----~~---G~~-~~~~~~~i~~i~~~~--~lP   94 (310)
                      .| +.++|+-++-. ..-.++|+.++++|+++|+..|...  .|...    .+   |.. .....+.++++++.+  ++|
T Consensus       269 ~P~V~VKi~pd~~~-~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~I~~v~~~v~~~iP  347 (415)
T 3i65_A          269 KPLVFVKLAPDLNQ-EQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIP  347 (415)
T ss_dssp             CCEEEEEECSCCCH-HHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHHHHHHHHHTTTCSC
T ss_pred             CCeEEEEecCCCCH-HHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHHHHHHHHHhCCCCC
Confidence            45 66677654310 0114789999999999997666211  11110    11   210 011246788999888  799


Q ss_pred             eEeeccccchHHHHHHHHcCCCeeee
Q 037779           95 VMAKARIGHFVEAQILEAIGVDYVDE  120 (310)
Q Consensus        95 v~~kd~i~~~~~~~~~~~aGad~v~~  120 (310)
                      |+....|.+.+++..+..+|||.|.+
T Consensus       348 IIg~GGI~s~eDa~e~l~aGAd~VqI  373 (415)
T 3i65_A          348 IIASGGIFSGLDALEKIEAGASVCQL  373 (415)
T ss_dssp             EEECSSCCSHHHHHHHHHHTEEEEEE
T ss_pred             EEEECCCCCHHHHHHHHHcCCCEEEE
Confidence            99999998878888888899999873

>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=88.76  E-value=13  Score=33.47  Aligned_cols=82  Identities=11%  Similarity=0.033  Sum_probs=46.0

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc-CcceEeeccccc----hHHHHHHHHcCCCe
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV-TIPVMAKARIGH----FVEAQILEAIGVDY  117 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~-~lPv~~kd~i~~----~~~~~~~~~aGad~  117 (310)
                      +.++.+.+.|+++|..+.  .|.+     +..+...   +.++.+.+.+ ++||++...-..    .+.++.+.++|||+
T Consensus        33 ~lv~~li~~Gv~Gl~v~G--tTGE-----~~~Lt~~Er~~v~~~~v~~~grvpViaGvg~~~t~~ai~la~~A~~~Gada  105 (313)
T 3dz1_A           33 RLTDFYAEVGCEGVTVLG--ILGE-----APKLDAAEAEAVATRFIKRAKSMQVIVGVSAPGFAAMRRLARLSMDAGAAG  105 (313)
T ss_dssp             HHHHHHHHTTCSEEEEST--GGGT-----GGGSCHHHHHHHHHHHHHHCTTSEEEEECCCSSHHHHHHHHHHHHHHTCSE
T ss_pred             HHHHHHHHCCCCEEEeCc--cCcC-----hhhCCHHHHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHHHHHHcCCCE
Confidence            678899999999985441  0100     1112222   2344444443 689988754322    24566778899999


Q ss_pred             eee-cCC--CChhHHHHHHH
Q 037779          118 VDE-SEV--LTPADEENHIN  134 (310)
Q Consensus       118 v~~-~~~--~~~~~~~~~~~  134 (310)
                      ++. +..  .+.+.+.+.++
T Consensus       106 vlv~~P~~~~s~~~l~~~f~  125 (313)
T 3dz1_A          106 VMIAPPPSLRTDEQITTYFR  125 (313)
T ss_dssp             EEECCCTTCCSHHHHHHHHH
T ss_pred             EEECCCCCCCCHHHHHHHHH
Confidence            983 221  23344554443

>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*

Probab=88.62  E-value=15  Score=33.90  Aligned_cols=48  Identities=15%  Similarity=0.194  Sum_probs=36.2

Q ss_pred             cHHHHHHHHhcC-----------CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          209 PYDLVMQTKQLG-----------RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       209 ~~~l~~~i~~~~-----------~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                      ++++++.+.+..           ++|+|.=-++|+ +.+++++++++|..-|=++|.+-.
T Consensus       223 ~~~~L~~I~~~v~~~~~~~~~~~~vpLVlHGgSG~-p~e~i~~ai~~GV~KiNi~Tdl~~  281 (349)
T 3elf_A          223 RPDILAQGQQVAAAKLGLPADAKPFDFVFHGGSGS-LKSEIEEALRYGVVKMNVDTDTQY  281 (349)
T ss_dssp             CTHHHHHHHHHHHHHHTCCTTCCCCCEEECCCTTC-CHHHHHHHHHTTEEEEEECHHHHH
T ss_pred             CHHHHHHHHHHHHhhcCCccccCCCcEEEeCCCCC-CHHHHHHHHHcCCEEEEcchHHHH
Confidence            456666665432           689876556677 478999999999999999997754

>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6

Probab=88.57  E-value=16  Score=34.17  Aligned_cols=131  Identities=8%  Similarity=0.036  Sum_probs=77.7

Q ss_pred             hHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeee-cCCCChhHHHHHHHhcCCCCcEEee--cCCHHHHHHHHH
Q 037779           81 PQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDE-SEVLTPADEENHINKHNFRVPFVCG--CRNLGESLRRIR  157 (310)
Q Consensus        81 ~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~-~~~~~~~~~~~~~~~~~~~l~v~~~--v~t~~ea~~a~~  157 (310)
                      ...+.+.++..+++++.--+  +...++.+.+.|++.+-+ +..++...+++.+.+  .+.+++++  ..|.+|...|++
T Consensus       103 ~~~L~~~~~~~Gi~~~stpf--D~~svd~l~~~~vd~~KIgS~~~~N~pLL~~va~--~gKPViLStGmaTl~Ei~~Ave  178 (385)
T 1vli_A          103 ILPLLDYCREKQVIFLSTVC--DEGSADLLQSTSPSAFKIASYEINHLPLLKYVAR--LNRPMIFSTAGAEISDVHEAWR  178 (385)
T ss_dssp             HHHHHHHHHHTTCEEECBCC--SHHHHHHHHTTCCSCEEECGGGTTCHHHHHHHHT--TCSCEEEECTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcEEEccC--CHHHHHHHHhcCCCEEEECcccccCHHHHHHHHh--cCCeEEEECCCCCHHHHHHHHH
Confidence            45566777778898866543  335667788899999864 334455666776765  35666664  678898877664


Q ss_pred             ----hCC-CEEEEecC-CCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccC
Q 037779          158 ----EGA-AMIRTKGE-AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAG  230 (310)
Q Consensus       158 ----~Ga-d~I~v~g~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~G  230 (310)
                          .|. +++-.+.. .|                     ++ +++         ..+...+..+++.. ++||. ..+=
T Consensus       179 ~i~~~Gn~~iiLlhc~s~Y---------------------Pt-p~~---------~~nL~aI~~Lk~~f~~lpVG-~SdH  226 (385)
T 1vli_A          179 TIRAEGNNQIAIMHCVAKY---------------------PA-PPE---------YSNLSVIPMLAAAFPEAVIG-FSDH  226 (385)
T ss_dssp             HHHTTTCCCEEEEEECSSS---------------------SC-CGG---------GCCTTHHHHHHHHSTTSEEE-EEEC
T ss_pred             HHHHCCCCcEEEEeccCCC---------------------CC-Chh---------hcCHHHHHHHHHHcCCCCEE-eCCC
Confidence                466 66655522 12                     11 111         11334556666665 68884 3222


Q ss_pred             CCCCHHHHHHHHHcCCC
Q 037779          231 GVATPADAAMMMQLGCD  247 (310)
Q Consensus       231 GI~t~~di~~~~~~Gad  247 (310)
                      ..+...-...+..+||+
T Consensus       227 t~G~~~~~~AAvAlGA~  243 (385)
T 1vli_A          227 SEHPTEAPCAAVRLGAK  243 (385)
T ss_dssp             CSSSSHHHHHHHHTTCS
T ss_pred             CCCchHHHHHHHHcCCC
Confidence            22213445566789999

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=88.56  E-value=1.4  Score=42.43  Aligned_cols=110  Identities=13%  Similarity=0.122  Sum_probs=69.3

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeecC--
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESE--  122 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~--  122 (310)
                      .+.+..+.+.|++.+..-    +    -+|.. ..-.+.++.+++..++|++.+... +.+.+..+.  |+|.|....  
T Consensus       230 ~~~a~~l~~~gvd~lvvd----t----a~G~~-~~~L~~I~~l~~~~~vpvi~k~v~-~~~~a~~l~--G~d~v~vg~g~  297 (486)
T 2cu0_A          230 IKRAIELDKAGVDVIVVD----T----AHAHN-LKAIKSMKEMRQKVDADFIVGNIA-NPKAVDDLT--FADAVKVGIGP  297 (486)
T ss_dssp             HHHHHHHHHTTCSEEEEE----C----SCCCC-HHHHHHHHHHHHTCCSEEEEEEEC-CHHHHTTCT--TSSEEEECSSC
T ss_pred             HHHHHHHHHhcCCceEEE----e----cCCcE-eehhhHHHHHHHHhCCccccCCcC-CHHHHHHhh--CCCeEEEeeee
Confidence            567888999999987321    1    11210 111566788888889999887554 334444444  999986310  


Q ss_pred             ------------CCChh----HHHHHHHhcCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEecC
Q 037779          123 ------------VLTPA----DEENHINKHNFRVPFVC--GCRNLGESLRRIREGAAMIRTKGE  168 (310)
Q Consensus       123 ------------~~~~~----~~~~~~~~~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~g~  168 (310)
                                  ..+..    ++.+...+  .++++++  ++.+..++.+++.+|||.+.+..+
T Consensus       298 g~~~~~r~~~~~g~~~~~~l~~~~~~~~~--~~vpVia~GGi~~~~di~kalalGA~~v~~g~~  359 (486)
T 2cu0_A          298 GSICTTRIVAGVGVPQITAVAMVADRAQE--YGLYVIADGGIRYSGDIVKAIAAGADAVMLGNL  359 (486)
T ss_dssp             STTBCHHHHTCCCCCHHHHHHHHHHHHHH--HTCEEEEESCCCSHHHHHHHHHTTCSEEEESTT
T ss_pred             ccceeeeEEeecCcchHHHHHHHHHHHHH--cCCcEEecCCCCCHHHHHHHHHcCCCceeeChh
Confidence                        00111    11112222  2578888  699999999999999999998644

>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}

Probab=88.55  E-value=1.9  Score=38.72  Aligned_cols=63  Identities=24%  Similarity=0.284  Sum_probs=39.0

Q ss_pred             HHHHHHHhc--CCCCEEEEccCCCCCHHHHH---HHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          211 DLVMQTKQL--GRLPVVHFAAGGVATPADAA---MMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di~---~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      ++++.+.+.  .++||+ +-.|+-++.+.+.   .+.++|||++++..-.|..++.....+-|....++
T Consensus        57 ~v~~~~~~~~~gr~pvi-aGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a  124 (292)
T 2vc6_A           57 QVVEITIKTANGRVPVI-AGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAA  124 (292)
T ss_dssp             HHHHHHHHHHTTSSCBE-EECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCcEE-EecCCccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh
Confidence            344444432  478996 3455554444333   34457999999999999887776665555554443

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=88.53  E-value=0.97  Score=41.74  Aligned_cols=72  Identities=19%  Similarity=0.085  Sum_probs=50.2

Q ss_pred             HHHHHHHHcCCcEEEecc-cccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcC-CCeee
Q 037779           46 EQARIAEEAGACAVMALE-RVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIG-VDYVD  119 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aG-ad~v~  119 (310)
                      ++++.++++|+++|.+.+ ..........+  ...+.+.++++++.+++||+....+.+.+.++.+.+.| ||.|.
T Consensus       243 ~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~--~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~G~aD~V~  316 (349)
T 3hgj_A          243 AFARRLKELGVDLLDCSSGGVVLRVRIPLA--PGFQVPFADAVRKRVGLRTGAVGLITTPEQAETLLQAGSADLVL  316 (349)
T ss_dssp             HHHHHHHHTTCCEEEEECCCSCSSSCCCCC--TTTTHHHHHHHHHHHCCEEEECSSCCCHHHHHHHHHTTSCSEEE
T ss_pred             HHHHHHHHcCCCEEEEecCCcCcccccCCC--ccccHHHHHHHHHHcCceEEEECCCCCHHHHHHHHHCCCceEEE
Confidence            679999999999985442 10000000000  01246788999999999999998887777888888888 99987

>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*

Probab=88.48  E-value=13  Score=33.20  Aligned_cols=83  Identities=18%  Similarity=0.139  Sum_probs=46.7

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc---CcceEeeccccc----hHHHHHHHHcCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV---TIPVMAKARIGH----FVEAQILEAIGV  115 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~---~lPv~~kd~i~~----~~~~~~~~~aGa  115 (310)
                      +.++.+.+.|++++..+.  .|     +-+..+...   +.++.+.+.+   ++||++...-..    .+.++.+.++||
T Consensus        32 ~lv~~li~~Gv~gl~v~G--tt-----GE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~Ga  104 (301)
T 3m5v_A           32 RLIKRQIENGIDAVVPVG--TT-----GESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGA  104 (301)
T ss_dssp             HHHHHHHHTTCCEEECSS--TT-----TTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCEEEECc--cc-----cChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHcCC
Confidence            678889999999984431  01     000112112   2344444443   589998754322    245667788999


Q ss_pred             Ceee-ecCC---CChhHHHHHHHh
Q 037779          116 DYVD-ESEV---LTPADEENHINK  135 (310)
Q Consensus       116 d~v~-~~~~---~~~~~~~~~~~~  135 (310)
                      |+++ .+..   .+.+.+.+.++.
T Consensus       105 davlv~~P~y~~~s~~~l~~~f~~  128 (301)
T 3m5v_A          105 DGILSVAPYYNKPTQQGLYEHYKA  128 (301)
T ss_dssp             SEEEEECCCSSCCCHHHHHHHHHH
T ss_pred             CEEEEcCCCCCCCCHHHHHHHHHH
Confidence            9988 3322   234455555543

>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}

Probab=88.47  E-value=7.4  Score=34.59  Aligned_cols=189  Identities=16%  Similarity=0.139  Sum_probs=111.6

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-ecCC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEV  123 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~  123 (310)
                      .+.|..++++||++|..- + ..|.|.-       ..++++.+++.++.|+=.-.-. +.+..+++.+.--+.+. .++.
T Consensus        56 v~aA~~ae~aGAdGITvH-l-ReDrRHI-------~d~Dv~~L~~~i~t~lNlEma~-t~emi~ial~~kP~~vtLVPEk  125 (278)
T 3gk0_A           56 VRAALAAEDAGADAITLH-L-REDRRHI-------VDADVRTLRPRVKTRMNLECAV-TPEMLDIACEIRPHDACLVPEK  125 (278)
T ss_dssp             HHHHHHHHHTTCSEEEEE-C-CTTCSSS-------CHHHHHHHHHHCSSCEEEEECS-SHHHHHHHHHHCCSEEEECCCS
T ss_pred             HHHHHHHHHcCCCEEEec-c-CCCcccC-------CHHHHHHHHHHcCCCEEeecCC-CHHHHHHHHHcCCCEEEECCCC
Confidence            377888999999998432 1 1244433       3778999998888877433222 23566788888888875 3211


Q ss_pred             ------------C-C---hhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcc
Q 037779          124 ------------L-T---PADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGD  187 (310)
Q Consensus       124 ------------~-~---~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~  187 (310)
                                  . .   ...+++.++..+..+-++++. +++.++.+.+.|+|+|=.+    |+.+.++          
T Consensus       126 reE~TTegGlDv~~~~~~L~~~i~~L~~~GIrVSLFIDp-d~~qI~aA~~~GAd~IELh----TG~YA~a----------  190 (278)
T 3gk0_A          126 RSELTTEGGLDVVGHFDAVRAACKQLADAGVRVSLFIDP-DEAQIRAAHETGAPVIELH----TGRYADA----------  190 (278)
T ss_dssp             GGGBCSSSSBCTTTTHHHHHHHHHHHHHTTCEEEEEECS-CHHHHHHHHHHTCSEEEEC----CHHHHTC----------
T ss_pred             CCCcCCCcchhhhccHHHHHHHHHHHHHCCCEEEEEeCC-CHHHHHHHHHhCcCEEEEe----cchhhcc----------
Confidence                        1 1   123445555555556677773 6778889999999999876    1111100          


Q ss_pred             eecccccCchhHHhhhccCCCcHHHHHHH---HhcCCCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccCC---C
Q 037779          188 IRVLRNMDDDEVFTFAKNIAAPYDLVMQT---KQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSG---D  260 (310)
Q Consensus       188 ~~~l~~~~~d~~~~~~~~~~~~~~l~~~i---~~~~~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~~---d  260 (310)
                          .  ..+.       ....++.+...   .....+-|  =|.-|+ +.+++..+.+. +..-+-+|-+|+..-   -
T Consensus       191 ----~--~~~~-------~~~el~rl~~aA~~A~~lGL~V--nAGHGL-~y~Nv~~ia~ip~i~ElnIGHaiIa~Al~~G  254 (278)
T 3gk0_A          191 ----H--DAAE-------QQREFERIATGVDAGIALGLKV--NAGHGL-HYTNVQAIAALPGIAELNIGHAIVAHAVFVG  254 (278)
T ss_dssp             ----S--SHHH-------HHHHHHHHHHHHHHHHHTTCEE--EECTTC-CTTTHHHHHTCTTEEEEEECHHHHHHHHHHC
T ss_pred             ----C--Cchh-------HHHHHHHHHHHHHHHHHcCCEE--ecCCCC-CHHHHHHHHhCCCCeEEecCHHHHHHHHHHh
Confidence                0  0000       00001111111   11134556  568899 58999887664 788899998877521   1


Q ss_pred             HHHHHHHHHHHHHc
Q 037779          261 PVRRARAIVQAVTN  274 (310)
Q Consensus       261 p~~~~~~~~~~~~~  274 (310)
                      ..+.++++++.+..
T Consensus       255 l~~AVr~mk~lm~~  268 (278)
T 3gk0_A          255 WDNAVREMKAIMVA  268 (278)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            34567777777654

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=88.47  E-value=1  Score=41.78  Aligned_cols=73  Identities=36%  Similarity=0.434  Sum_probs=52.6

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhcC---CCCC---------CCChHHHHHHHhhcCcceEeeccccchHHHH
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQG---GVAR---------MSDPQLIKQIKSSVTIPVMAKARIGHFVEAQ  108 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~---G~~~---------~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~  108 (310)
                      .+.+++.++.+.+.|+|.|..-+      ..++   |...         ....+.++++++.+++||++-..+.+.+.+.
T Consensus       151 ~v~t~~~a~~a~~~GaD~i~v~g------~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~~~~~~  224 (369)
T 3bw2_A          151 TATTPEEARAVEAAGADAVIAQG------VEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMRGGQIA  224 (369)
T ss_dssp             EESSHHHHHHHHHTTCSEEEEEC------TTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCSHHHHH
T ss_pred             ECCCHHHHHHHHHcCCCEEEEeC------CCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCCCHHHHH
Confidence            34567889999999999984311      1122   1110         1226788899988999999998886667777


Q ss_pred             HHHHcCCCeee
Q 037779          109 ILEAIGVDYVD  119 (310)
Q Consensus       109 ~~~~aGad~v~  119 (310)
                      .+.++|||.|.
T Consensus       225 ~~l~~GAd~V~  235 (369)
T 3bw2_A          225 AVLAAGADAAQ  235 (369)
T ss_dssp             HHHHTTCSEEE
T ss_pred             HHHHcCCCEEE
Confidence            88889999987

>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1

Probab=88.38  E-value=6.4  Score=35.18  Aligned_cols=84  Identities=15%  Similarity=0.137  Sum_probs=45.9

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCC---h----HHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSD---P----QLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYV  118 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~---~----~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v  118 (310)
                      +.|+.+.+.||+.| +++...|.+    |+.....   .    ..++.+++. ++|+++..+  ..+-++.+.++|++.|
T Consensus        33 ~~a~~~v~~GAdiI-DIGgestrp----ga~~v~~~eE~~Rv~pvi~~l~~~-~~piSIDT~--~~~va~aAl~aGa~iI  104 (280)
T 1eye_A           33 KHGLAMAAAGAGIV-DVGGESSRP----GATRVDPAVETSRVIPVVKELAAQ-GITVSIDTM--RADVARAALQNGAQMV  104 (280)
T ss_dssp             HHHHHHHHTTCSEE-EEECC------------------HHHHHHHHHHHHHT-TCCEEEECS--CHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHCCCCEE-EECCccCCC----CCCCCCHHHHHHHHHHHHHHhhcC-CCEEEEeCC--CHHHHHHHHHcCCCEE
Confidence            67999999999998 665222211    1100111   1    123344433 889987654  3356788888999999


Q ss_pred             e-ecCCCChhHHHHHHHhcC
Q 037779          119 D-ESEVLTPADEENHINKHN  137 (310)
Q Consensus       119 ~-~~~~~~~~~~~~~~~~~~  137 (310)
                      - ++.....++....+.+++
T Consensus       105 Ndvsg~~~d~~m~~~~a~~~  124 (280)
T 1eye_A          105 NDVSGGRADPAMGPLLAEAD  124 (280)
T ss_dssp             EETTTTSSCTTHHHHHHHHT
T ss_pred             EECCCCCCCHHHHHHHHHhC
Confidence            6 332211334555555543

>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A

Probab=88.34  E-value=8.4  Score=34.82  Aligned_cols=136  Identities=12%  Similarity=0.096  Sum_probs=69.7

Q ss_pred             ccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhh--cCCCCCCCChHHHHHHHhhc------CcceEeec
Q 037779           28 VGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRA--QGGVARMSDPQLIKQIKSSV------TIPVMAKA   99 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~--~~G~~~~~~~~~i~~i~~~~------~lPv~~kd   99 (310)
                      .|+..=+.-|.-....-.+.++.++++|+.++ .++......|+  ..|....+..+.+.+|+...      +.++++.-
T Consensus        81 ~PviaD~d~Gyg~~~~v~~tv~~l~~aGaagv-~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~A  159 (302)
T 3fa4_A           81 TPVIADADTGYGGPIMVARTTEQYSRSGVAAF-HIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVVIA  159 (302)
T ss_dssp             SCEEEECTTTTSSHHHHHHHHHHHHHTTCCEE-EECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred             CCEEEECCCCCCCHHHHHHHHHHHHHcCCcEE-EECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence            35555555553111001366899999999998 46521111111  11222233334455554332      45666654


Q ss_pred             cccc---------hHHHHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeec----CCHH-HHHHHHHhCCCEEEE
Q 037779          100 RIGH---------FVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGC----RNLG-ESLRRIREGAAMIRT  165 (310)
Q Consensus       100 ~i~~---------~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v----~t~~-ea~~a~~~Gad~I~v  165 (310)
                      +.+.         .+.++.+.++|||.|......+++++.+..+... +.++.+.+    .++. ......++|...+..
T Consensus       160 RTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~g~~~~~ei~~~~~~~~-~~Pl~~n~~~~g~~p~~~~~eL~~lGv~~v~~  238 (302)
T 3fa4_A          160 RTDSLQTHGYEESVARLRAARDAGADVGFLEGITSREMARQVIQDLA-GWPLLLNMVEHGATPSISAAEAKEMGFRIIIF  238 (302)
T ss_dssp             EECCHHHHCHHHHHHHHHHHHTTTCSEEEETTCCCHHHHHHHHHHTT-TSCEEEECCTTSSSCCCCHHHHHHHTCSEEEE
T ss_pred             EecccccCCHHHHHHHHHHHHHcCCCEEeecCCCCHHHHHHHHHHhc-CCceeEEEecCCCCCCCCHHHHHHcCCCEEEE
Confidence            4431         2456777889999998665556666665555421 34544421    1110 233445669887765

>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*

Probab=88.33  E-value=1.9  Score=38.75  Aligned_cols=63  Identities=10%  Similarity=0.090  Sum_probs=38.3

Q ss_pred             HHHHHHHhc--CCCCEEEEccCCCCCHHHH---HHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          211 DLVMQTKQL--GRLPVVHFAAGGVATPADA---AMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di---~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      ++++.+.+.  .++||+ +-.|+.++.+.+   +.+.++|||++++..-.|..++.....+-|....++
T Consensus        61 ~v~~~~~~~~~grvpvi-aGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a  128 (293)
T 1f6k_A           61 EIFRIAKDEAKDQIALI-AQVGSVNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAE  128 (293)
T ss_dssp             HHHHHHHHHHTTSSEEE-EECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCeEE-EecCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHh
Confidence            344444432  478996 345555444433   333457999999999999887766555555444443

>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A

Probab=88.31  E-value=2.4  Score=37.99  Aligned_cols=61  Identities=15%  Similarity=0.248  Sum_probs=36.8

Q ss_pred             HHHHHHhc--CCCCEEEEccCCCCCHHHH---HHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779          212 LVMQTKQL--GRLPVVHFAAGGVATPADA---AMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       212 l~~~i~~~--~~iPVv~ia~GGI~t~~di---~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                      +++.+.+.  .++||++ -.|+-++.+.+   +.+.++|||++++..-.|..++.....+-|....+
T Consensus        60 v~~~~~~~~~grvpvia-Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~  125 (292)
T 3daq_A           60 ILKTVIDLVDKRVPVIA-GTGTNDTEKSIQASIQAKALGADAIMLITPYYNKTNQRGLVKHFEAIAD  125 (292)
T ss_dssp             HHHHHHHHHTTSSCEEE-ECCCSCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcEEE-eCCcccHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHH
Confidence            44444332  4789953 33444433333   23445799999999998888776655555544444

>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*

Probab=88.29  E-value=2.5  Score=38.17  Aligned_cols=63  Identities=14%  Similarity=0.188  Sum_probs=39.1

Q ss_pred             HHHHHHHhc--C-CCCEEEEccCCCCCHHHHH---HHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          211 DLVMQTKQL--G-RLPVVHFAAGGVATPADAA---MMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       211 ~l~~~i~~~--~-~iPVv~ia~GGI~t~~di~---~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      ++++.+.+.  . ++||++ -.|+-++.+.+.   .+.++|||++++..-.|..++.....+-|....++
T Consensus        64 ~v~~~~~~~~~g~rvpvia-Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a  132 (301)
T 3m5v_A           64 TCIEIAVETCKGTKVKVLA-GAGSNATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQS  132 (301)
T ss_dssp             HHHHHHHHHHTTSSCEEEE-ECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCeEEE-eCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh
Confidence            344444442  4 689953 344554433333   34468999999999999888776665555555444

>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}

Probab=88.18  E-value=0.43  Score=40.52  Aligned_cols=41  Identities=24%  Similarity=0.327  Sum_probs=37.5

Q ss_pred             hHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec
Q 037779           81 PQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES  121 (310)
Q Consensus        81 ~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~  121 (310)
                      ++.++++++.+++|+++..++.+.++++.+.++||++|..+
T Consensus       139 p~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsTs  179 (192)
T 3kts_A          139 PEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTTS  179 (192)
T ss_dssp             HHHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEEC
T ss_pred             HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEeC
Confidence            68899999999999999999998899999999999999743

>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A

Probab=88.14  E-value=7.5  Score=35.25  Aligned_cols=136  Identities=11%  Similarity=0.042  Sum_probs=67.9

Q ss_pred             ccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhh--cCCCCCCCChHHHHHHHhh------cCcceEeec
Q 037779           28 VGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRA--QGGVARMSDPQLIKQIKSS------VTIPVMAKA   99 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~--~~G~~~~~~~~~i~~i~~~------~~lPv~~kd   99 (310)
                      .|+..=+.-|.-....-.+.++.+.++|+.++ .++......++  ..|..+.+..+.+.+|+..      .+.++++.-
T Consensus        89 ~PviaD~d~Gyg~~~~v~~~v~~l~~aGaagv-~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~A  167 (307)
T 3lye_A           89 PPLIADMDTGYGGPIMVARTVEHYIRSGVAGA-HLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVLIA  167 (307)
T ss_dssp             CCEEEECTTCSSSHHHHHHHHHHHHHTTCCEE-EECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CcEEEECCCCCCCHHHHHHHHHHHHHcCCeEE-EEcCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence            45555555553111001366899999999998 46411111111  1122223333444555332      245666654


Q ss_pred             cccc---------hHHHHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEee----cCCHH-HHHHHHHhCCCEEEE
Q 037779          100 RIGH---------FVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCG----CRNLG-ESLRRIREGAAMIRT  165 (310)
Q Consensus       100 ~i~~---------~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~----v~t~~-ea~~a~~~Gad~I~v  165 (310)
                      +.+.         .+.++.+.++|||.|......++.++.+..+... ++++.+.    -.++. ......++|.+.|..
T Consensus       168 RTDa~~~~gldeAi~Ra~ay~eAGAD~ifi~~~~~~~~~~~i~~~~~-~~Pv~~n~~~~g~~p~~t~~eL~~lGv~~v~~  246 (307)
T 3lye_A          168 RTDALQSLGYEECIERLRAARDEGADVGLLEGFRSKEQAAAAVAALA-PWPLLLNSVENGHSPLITVEEAKAMGFRIMIF  246 (307)
T ss_dssp             EECCHHHHCHHHHHHHHHHHHHTTCSEEEECCCSCHHHHHHHHHHHT-TSCBEEEEETTSSSCCCCHHHHHHHTCSEEEE
T ss_pred             echhhhccCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHcc-CCceeEEeecCCCCCCCCHHHHHHcCCeEEEE
Confidence            4431         2456778889999998655545556555554432 2444332    11110 133455679988754

>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A

Probab=88.04  E-value=2.3  Score=38.36  Aligned_cols=62  Identities=13%  Similarity=0.152  Sum_probs=37.2

Q ss_pred             HHHHHHHhc--CCCCEEEEccCCCCCHHHH---HHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779          211 DLVMQTKQL--GRLPVVHFAAGGVATPADA---AMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di---~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                      ++++.+.+.  .++||++ -.|+.++.+.+   +.+.++|||++++..-.|..++.....+-|....+
T Consensus        68 ~v~~~~~~~~~grvpVia-Gvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~  134 (303)
T 2wkj_A           68 QVLEIVAEEAKGKIKLIA-HVGCVSTAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIID  134 (303)
T ss_dssp             HHHHHHHHHHTTTSEEEE-ECCCSSHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCcEEE-ecCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHHH
Confidence            344444432  4789963 34554434433   33345799999999999987776655544444333

>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}

Probab=87.86  E-value=2.3  Score=38.16  Aligned_cols=62  Identities=5%  Similarity=-0.056  Sum_probs=37.9

Q ss_pred             HHHHHHHhc--CCCCEEEEccCCCCCHHHHH---HHHHcCCCEEEEccccccC-CCHHHHHHHHHHHHH
Q 037779          211 DLVMQTKQL--GRLPVVHFAAGGVATPADAA---MMMQLGCDGVFVGSGVFKS-GDPVRRARAIVQAVT  273 (310)
Q Consensus       211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di~---~~~~~GadgV~VGsai~~~-~dp~~~~~~~~~~~~  273 (310)
                      ++++.+.+.  .++||+ +-.|+.++.+.+.   .+.++|||++++..-.|.. ++.....+-|....+
T Consensus        60 ~v~~~~~~~~~gr~pvi-aGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~  127 (294)
T 3b4u_A           60 AILSSFIAAGIAPSRIV-TGVLVDSIEDAADQSAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFS  127 (294)
T ss_dssp             HHHHHHHHTTCCGGGEE-EEECCSSHHHHHHHHHHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCcEE-EeCCCccHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHH
Confidence            445555443  368986 3455554444333   3345799999999999987 676555544444333

>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*

Probab=87.75  E-value=3.7  Score=36.21  Aligned_cols=111  Identities=16%  Similarity=0.216  Sum_probs=57.0

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChH----HHHHHHhhc-CcceEeeccc----c----chHHH----H
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQ----LIKQIKSSV-TIPVMAKARI----G----HFVEA----Q  108 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~----~i~~i~~~~-~lPv~~kd~i----~----~~~~~----~  108 (310)
                      +.++.+...|+|.| -+|     ...+..   ..+.+    .+..++... ++|++.-.+-    |    ..+.+    .
T Consensus        36 ~~a~~~~~~~aD~v-ElR-----~D~l~~---~~~~~~v~~~l~~lr~~~~~lPiI~T~Rt~~EGG~~~~~~~~~~~ll~  106 (258)
T 4h3d_A           36 KEAKELKDACLDII-EWR-----VDFFEN---VENIKEVKEVLYELRSYIHDIPLLFTFRSVVEGGEKLISRDYYTTLNK  106 (258)
T ss_dssp             HHHHHHTTSSCSEE-EEE-----GGGCTT---TTCHHHHHHHHHHHHHHCTTSCEEEECCCGGGTCSCCCCHHHHHHHHH
T ss_pred             HHHHHHhhcCCCEE-EEe-----eccccc---cCCHHHHHHHHHHHHHhcCCCCEEEEEechhhCCCCCCCHHHHHHHHH
Confidence            45777788899987 442     112211   11223    345556554 6999874322    1    11222    2


Q ss_pred             HHHHcC-CCeeeecCCCChhHHHHHH-Hh-cCCCCcEEeecCCH------HHH----HHHHHhCCCEEEEe
Q 037779          109 ILEAIG-VDYVDESEVLTPADEENHI-NK-HNFRVPFVCGCRNL------GES----LRRIREGAAMIRTK  166 (310)
Q Consensus       109 ~~~~aG-ad~v~~~~~~~~~~~~~~~-~~-~~~~l~v~~~v~t~------~ea----~~a~~~Gad~I~v~  166 (310)
                      .+...| +|+|.+--. .+.+..+.+ .. +..+..++++.|++      +|.    .+..+.|||++++-
T Consensus       107 ~~~~~~~~d~iDvEl~-~~~~~~~~l~~~a~~~~~kiI~S~Hdf~~TP~~~el~~~~~~~~~~gaDIvKia  176 (258)
T 4h3d_A          107 EISNTGLVDLIDVELF-MGDEVIDEVVNFAHKKEVKVIISNHDFNKTPKKEEIVSRLCRMQELGADLPKIA  176 (258)
T ss_dssp             HHHHTTCCSEEEEEGG-GCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             HHHhcCCchhhHHhhh-ccHHHHHHHHHHHHhCCCEEEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence            333345 899873211 223333322 21 23457777777742      232    34456799998875

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=87.67  E-value=1.4  Score=38.06  Aligned_cols=65  Identities=28%  Similarity=0.249  Sum_probs=48.6

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc--CcceEeeccccchHHHHHHHHcCCCee
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV--TIPVMAKARIGHFVEAQILEAIGVDYV  118 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~--~lPv~~kd~i~~~~~~~~~~~aGad~v  118 (310)
                      .+.++.+.++|+++| ..+   + ....+|.    +.+.++.+++.+  ++||+....+.+.+++..+.++||+.|
T Consensus       135 ~~~a~~a~eaGad~I-~ts---t-g~~~gga----~~~~i~~v~~~v~~~ipVia~GGI~t~~da~~~l~aGA~~i  201 (225)
T 1mzh_A          135 KKAVEICIEAGADFI-KTS---T-GFAPRGT----TLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIEAGADRI  201 (225)
T ss_dssp             HHHHHHHHHHTCSEE-ECC---C-SCSSSCC----CHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHhCCCEE-EEC---C-CCCCCCC----CHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHhCchHH
Confidence            467999999999998 221   2 1111232    478899998887  799999988887778877778999976

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=87.43  E-value=1.3  Score=41.63  Aligned_cols=62  Identities=23%  Similarity=0.349  Sum_probs=44.0

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccc----cccCCCHHHHHHHHHHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG----VFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsa----i~~~~dp~~~~~~~~~~~~  273 (310)
                      .++.++.+++..++||++   .|+.+++++..+.++|+|+|.|+..    +....-....+.++.+.+.
T Consensus       240 ~~~~i~~lr~~~~~Pviv---Kgv~~~e~A~~a~~aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~  305 (392)
T 2nzl_A          240 SWEDIKWLRRLTSLPIVA---KGILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVE  305 (392)
T ss_dssp             CHHHHHHHC--CCSCEEE---EEECCHHHHHHHHHTTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhCCCEEE---EecCCHHHHHHHHHcCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcC
Confidence            578888898877899963   5778999999999999999999432    2333334556666666653

>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*

Probab=87.36  E-value=2.1  Score=37.37  Aligned_cols=111  Identities=12%  Similarity=0.120  Sum_probs=55.4

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHH----HHHHHhhc-CcceEeeccc--------cchHHH-HHH-
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQL----IKQIKSSV-TIPVMAKARI--------GHFVEA-QIL-  110 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~----i~~i~~~~-~lPv~~kd~i--------~~~~~~-~~~-  110 (310)
                      +.++.+.+.|+|.+ -++     ...+..    .+.+.    +..+|+.. ++|++.-.+-        +..+.+ +.+ 
T Consensus        21 ~~~~~~~~~~~D~v-ElR-----vD~l~~----~~~~~v~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~   90 (238)
T 1sfl_A           21 IQKINHRIDAIDVL-ELR-----IDQFEN----VTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLNLIS   90 (238)
T ss_dssp             HHHHHHTTTTCSEE-EEE-----CTTSTT----CCHHHHHHHHHHHC---CCSEEEEECCBGGGTSCBCCCHHHHHHHHH
T ss_pred             HHHHHhhhcCCCEE-EEE-----eccccc----CCHHHHHHHHHHHHHhccCCCEEEEeeccccCCCCCCCHHHHHHHHH
Confidence            55777778899987 442     112211    01333    34566655 7899874321        122222 222 


Q ss_pred             --HHc-CCCeeeecCCC-ChhHHHHHH-Hh-cCCCCcEEeecCC----H--HHH----HHHHHhCCCEEEEe
Q 037779          111 --EAI-GVDYVDESEVL-TPADEENHI-NK-HNFRVPFVCGCRN----L--GES----LRRIREGAAMIRTK  166 (310)
Q Consensus       111 --~~a-Gad~v~~~~~~-~~~~~~~~~-~~-~~~~l~v~~~v~t----~--~ea----~~a~~~Gad~I~v~  166 (310)
                        .+. ++|+|.+.-.. .+.+..+.+ .. +..+..++++-|+    +  ++.    .++.+.|||++++-
T Consensus        91 ~~~~~~~~d~iDvEl~~~~~~~~~~~l~~~~~~~~~kvI~S~Hdf~~tp~~~el~~~~~~~~~~gaDivKia  162 (238)
T 1sfl_A           91 DLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDELQFIFFKMQKFNPEYVKLA  162 (238)
T ss_dssp             HGGGCTTCCEEEEECCTTSCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             HHHHhCCCCEEEEEccCCCChHHHHHHHHHHHhcCCEEEEEecCCCCCcCHHHHHHHHHHHHHcCCCEEEEE
Confidence              334 68998743222 033333222 22 2345777777764    3  343    34446899999875

>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}

Probab=87.35  E-value=1.2  Score=41.19  Aligned_cols=88  Identities=10%  Similarity=0.015  Sum_probs=58.6

Q ss_pred             ccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccc-------hh--------hhcC---CCC-CCCChHHHHHHH
Q 037779           28 VGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPA-------DI--------RAQG---GVA-RMSDPQLIKQIK   88 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~-------d~--------r~~~---G~~-~~~~~~~i~~i~   88 (310)
                      .|+..+|+-+.    ...++++.++++|+++|..+|..+|       +.        ..++   |.. .....+.+++++
T Consensus       194 ~PV~vKi~p~~----~~~~~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~  269 (345)
T 3oix_A          194 KPLGIKLPPYF----DIVHFDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFY  269 (345)
T ss_dssp             SCEEEEECCCC----CHHHHHHHHHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHH
T ss_pred             CCeEEEECCCC----CHHHHHHHHHHhCCCceEEEEeecccccceeeccCccccccccccCCcCCccccHHHHHHHHHHH
Confidence            57777777641    3367899999999987743331110       00        0111   111 011146788999


Q ss_pred             hhc--CcceEeeccccchHHHHHHHHcCCCeee
Q 037779           89 SSV--TIPVMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        89 ~~~--~lPv~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      +.+  ++||+....|.+.+++..+..+|||.|.
T Consensus       270 ~~~~~~ipIIg~GGI~s~~da~~~l~aGAd~V~  302 (345)
T 3oix_A          270 KRLNPSIQIIGTGGVXTGRDAFEHILCGASMVQ  302 (345)
T ss_dssp             TTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEE
T ss_pred             HHcCCCCcEEEECCCCChHHHHHHHHhCCCEEE
Confidence            988  7999999999887888777889999986

>2pcq_A Putative dihydrodipicolinate synthase; lyase, lysine biosynthesis, dihydrodipicoliante, S genomics, NPPSFA; 2.10A {Thermus thermophilus}

Probab=87.23  E-value=15  Score=32.49  Aligned_cols=66  Identities=11%  Similarity=0.037  Sum_probs=37.3

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccc----hHHHHHHHHcCCCeee
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGH----FVEAQILEAIGVDYVD  119 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~----~~~~~~~~~aGad~v~  119 (310)
                      +.++.+.+. ++++..+.       ..+-+..+...+..+-++..+ ++||++...-..    .+.++.+.++|||+++
T Consensus        23 ~lv~~li~~-v~gl~v~G-------ttGE~~~Ls~~Er~~v~~~~~~rvpviaGvg~~~t~~ai~la~~A~~~Gadavl   93 (283)
T 2pcq_A           23 ELAQALEPL-VDGLLVYG-------SNGEGVHLTPEERARGLRALRPRKPFLVGLMEETLPQAEGALLEAKAAGAMALL   93 (283)
T ss_dssp             HHHHHHGGG-SSCCEETC-------TTTTGGGSCHHHHHHHHHTCCCSSCCEEEECCSSHHHHHHHHHHHHHHTCSEEE
T ss_pred             HHHHHHHhh-CCEEEECC-------cCcCchhcCHHHHHHHHHHHHhCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEE
Confidence            668888888 99874431       011111232233333333222 799988755432    2455677789999987

>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}

Probab=87.22  E-value=2.5  Score=37.03  Aligned_cols=75  Identities=13%  Similarity=0.050  Sum_probs=51.1

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhh--cCcceEeeccccchHHHHHHHHcCCCee
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSS--VTIPVMAKARIGHFVEAQILEAIGVDYV  118 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~--~~lPv~~kd~i~~~~~~~~~~~aGad~v  118 (310)
                      ++.+++.++.+.+.|++.|..-...||.-+..  . ....++.++++++.  .++|+++-..|. .+.+..+.++||++|
T Consensus       141 S~ht~~Ea~~A~~~GaDyI~vgpvf~T~tK~~--~-~~~gl~~l~~~~~~~~~~iPvvAiGGI~-~~ni~~~~~aGa~gv  216 (243)
T 3o63_A          141 STHDPDQVAAAAAGDADYFCVGPCWPTPTKPG--R-AAPGLGLVRVAAELGGDDKPWFAIGGIN-AQRLPAVLDAGARRI  216 (243)
T ss_dssp             EECSHHHHHHHHHSSCSEEEECCSSCCCC--------CCCHHHHHHHHTC---CCCEEEESSCC-TTTHHHHHHTTCCCE
T ss_pred             eCCCHHHHHHHhhCCCCEEEEcCccCCCCCCC--c-chhhHHHHHHHHHhccCCCCEEEecCCC-HHHHHHHHHcCCCEE
Confidence            56778888888889999984322233322211  0 12347888998876  589999988884 456778899999998


Q ss_pred             e
Q 037779          119 D  119 (310)
Q Consensus       119 ~  119 (310)
                      .
T Consensus       217 a  217 (243)
T 3o63_A          217 V  217 (243)
T ss_dssp             E
T ss_pred             E
Confidence            7

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*

Probab=87.11  E-value=1.2  Score=41.35  Aligned_cols=72  Identities=17%  Similarity=0.116  Sum_probs=50.0

Q ss_pred             HHHHHHHHcCCcEEEecccc-cchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcC-CCeee
Q 037779           46 EQARIAEEAGACAVMALERV-PADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIG-VDYVD  119 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~-~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aG-ad~v~  119 (310)
                      ++++.++++|++.|.+.+.. ........+.  ..+.+.++.+++.+++||+....+.+.+.++.+.+.| ||.|.
T Consensus       250 ~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~--~~~~~~~~~ir~~~~iPVi~~GgI~s~e~a~~~l~~G~aD~V~  323 (363)
T 3l5l_A          250 ELARRFKAGGLDLLSVSVGFTIPDTNIPWGP--AFMGPIAERVRREAKLPVTSAWGFGTPQLAEAALQANQLDLVS  323 (363)
T ss_dssp             HHHHHHHHTTCCEEEEEECCCSSCCCCCCCT--TTTHHHHHHHHHHHTCCEEECSSTTSHHHHHHHHHTTSCSEEE
T ss_pred             HHHHHHHHcCCCEEEEecCccccccccCCCc--chhHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHCCCccEEE
Confidence            67999999999998544210 0000000010  1136778999999999999998887777888888888 99987

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=87.00  E-value=9.3  Score=33.94  Aligned_cols=109  Identities=16%  Similarity=0.145  Sum_probs=63.8

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceE-eeccccchHHHHHHHHcCCCeeee-c-
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVM-AKARIGHFVEAQILEAIGVDYVDE-S-  121 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~-~kd~i~~~~~~~~~~~aGad~v~~-~-  121 (310)
                      .++++.+.++|++++... ..|.+.           .+.+.+..+..++.++ .-......+.++.+.+.+.++|-. + 
T Consensus       115 ~~f~~~~~~aGvdGvIip-Dlp~ee-----------~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~~gfiY~vs~  182 (271)
T 3nav_A          115 DDFYQRCQKAGVDSVLIA-DVPTNE-----------SQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGKGYTYLLSR  182 (271)
T ss_dssp             HHHHHHHHHHTCCEEEET-TSCGGG-----------CHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHCCSCEEECCC
T ss_pred             HHHHHHHHHCCCCEEEEC-CCCHHH-----------HHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHCCCeEEEEec
Confidence            468999999999997432 222211           3344554455555322 111112235666666666666541 1 


Q ss_pred             ------C-CCC--hhHHHHHHHhcCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779          122 ------E-VLT--PADEENHINKHNFRVPFVC--GCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       122 ------~-~~~--~~~~~~~~~~~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                            . ..+  ..++++.++++. ++++.+  +++|++++..+...|||.+.+.
T Consensus       183 ~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGfGIst~e~~~~~~~~gADgvIVG  237 (271)
T 3nav_A          183 AGVTGAETKANMPVHALLERLQQFD-APPALLGFGISEPAQVKQAIEAGAAGAISG  237 (271)
T ss_dssp             C--------CCHHHHHHHHHHHHTT-CCCEEECSSCCSHHHHHHHHHTTCSEEEES
T ss_pred             cCCCCcccCCchhHHHHHHHHHHhc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence                  1 111  234556665532 566666  5899999998999999998884

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=86.75  E-value=6.2  Score=35.37  Aligned_cols=127  Identities=15%  Similarity=0.079  Sum_probs=74.3

Q ss_pred             hHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-ec------------CCCChhHHHHHHHhcCCCCcEEeecC
Q 037779           81 PQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-ES------------EVLTPADEENHINKHNFRVPFVCGCR  147 (310)
Q Consensus        81 ~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~------------~~~~~~~~~~~~~~~~~~l~v~~~v~  147 (310)
                      ....+.+.+...-++++.  ....+.++.+.++||+.|+ ..            ..+...+.++.+.+. .++++++...
T Consensus        10 ~~~~~~~~~~~~~g~i~~--~~~~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~i~~I~~~-~~iPv~~k~r   86 (305)
T 2nv1_A           10 ERVKRGMAEMQKGGVIMD--VINAEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNA-VSIPVMAKAR   86 (305)
T ss_dssp             HHHHHHHHHTTTTCEEEE--ESSHHHHHHHHHTTCSEEEECCC-------CCCCCCCCCHHHHHHHHHH-CSSCEEEEEC
T ss_pred             HHHHHHHHHHccCCeeec--CCHHHHHHHHHHcCCCEEEEcCCCcchhhhccCcccCCCHHHHHHHHHh-CCCCEEeccc
Confidence            333444555555566653  2334677888999999994 21            011234455555442 4678777766


Q ss_pred             C--HHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEE
Q 037779          148 N--LGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVV  225 (310)
Q Consensus       148 t--~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv  225 (310)
                      .  .+++..+.+.|+|.|... ...++.                               ++   .+++.  .....++++
T Consensus        87 ~g~~~~~~~~~a~GAd~V~~~-~~l~~~-------------------------------~~---~~~i~--~~~~g~~v~  129 (305)
T 2nv1_A           87 IGHIVEARVLEAMGVDYIDES-EVLTPA-------------------------------DE---EFHLN--KNEYTVPFV  129 (305)
T ss_dssp             TTCHHHHHHHHHHTCSEEEEC-TTSCCS-------------------------------CS---SCCCC--GGGCSSCEE
T ss_pred             ccchHHHHHHHHCCCCEEEEe-ccCCHH-------------------------------HH---HHHHH--HhccCCcEE
Confidence            6  788888888999998522 111110                               00   00000  011235663


Q ss_pred             EEccCCCCCHHHHHHHHHcCCCEEEE
Q 037779          226 HFAAGGVATPADAAMMMQLGCDGVFV  251 (310)
Q Consensus       226 ~ia~GGI~t~~di~~~~~~GadgV~V  251 (310)
                          -++.+++++.+..+.|+|.|.+
T Consensus       130 ----~~~~~~~e~~~a~~~Gad~V~~  151 (305)
T 2nv1_A          130 ----CGCRDLGEATRRIAEGASMLRT  151 (305)
T ss_dssp             ----EEESSHHHHHHHHHTTCSEEEE
T ss_pred             ----EEeCCHHHHHHHHHCCCCEEEe
Confidence                3556888998888999999988

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*

Probab=86.74  E-value=0.9  Score=42.52  Aligned_cols=68  Identities=12%  Similarity=-0.156  Sum_probs=48.3

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcC-CCeeee
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIG-VDYVDE  120 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aG-ad~v~~  120 (310)
                      ++++.++++|+++|.+.++.- .. ...+    .+.+.++.+++.+++||+....+ +.+.++.+.+.| ||.|..
T Consensus       259 ~la~~le~~Gvd~i~v~~~~~-~~-~~~~----~~~~~~~~ik~~~~iPvi~~Ggi-~~~~a~~~l~~g~aD~V~i  327 (377)
T 2r14_A          259 YLAGELDRRGLAYLHFNEPDW-IG-GDIT----YPEGFREQMRQRFKGGLIYCGNY-DAGRAQARLDDNTADAVAF  327 (377)
T ss_dssp             HHHHHHHHTTCSEEEEECCC--------C----CCTTHHHHHHHHCCSEEEEESSC-CHHHHHHHHHTTSCSEEEE
T ss_pred             HHHHHHHHcCCCEEEEeCCcc-cC-CCCc----chHHHHHHHHHHCCCCEEEECCC-CHHHHHHHHHCCCceEEee
Confidence            679999999999985542110 00 0111    13678899999999999998888 467787777777 999873

>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*

Probab=86.65  E-value=2.4  Score=38.64  Aligned_cols=85  Identities=16%  Similarity=0.164  Sum_probs=48.7

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCC-------CCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVAR-------MSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYV  118 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~-------~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v  118 (310)
                      +.|+.+.+.||+.| +++...|.+    |+..       ..-...|+.+++.+++|+++-.+  +.+-++.+.++||+.|
T Consensus        37 ~~a~~~v~~GAdII-DIGgeSTrP----Ga~~v~~~eE~~Rv~pvI~~l~~~~~vpiSIDT~--~~~Va~aAl~aGa~iI  109 (314)
T 2vef_A           37 QQARKLIAEGASML-DIGGESTRP----GSSYVEIEEEIQRVVPVIKAIRKESDVLISIDTW--KSQVAEAALAAGADLV  109 (314)
T ss_dssp             HHHHHHHHTTCSEE-EEECCC---------CHHHHHHHHHHHHHHHHHHHHHCCCEEEEECS--CHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHCCCCEE-EECCCcCCC----CCCCCCHHHHHHHHHHHHHHHHhhCCceEEEeCC--CHHHHHHHHHcCCCEE
Confidence            66899999999998 664211111    1000       00023345566667899987655  3366788888999999


Q ss_pred             e-ecCCCChhHHHHHHHhcC
Q 037779          119 D-ESEVLTPADEENHINKHN  137 (310)
Q Consensus       119 ~-~~~~~~~~~~~~~~~~~~  137 (310)
                      - ++.....++....+.+++
T Consensus       110 NDVsg~~~d~~m~~v~a~~~  129 (314)
T 2vef_A          110 NDITGLMGDEKMPHVVAEAR  129 (314)
T ss_dssp             EETTTTCSCTTHHHHHHHHT
T ss_pred             EECCCCCCChHHHHHHHHcC
Confidence            7 333211234555554443

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=86.65  E-value=1.5  Score=42.66  Aligned_cols=62  Identities=19%  Similarity=0.317  Sum_probs=46.7

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEc----cccccCCCHHHHHHHHHHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG----SGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VG----sai~~~~dp~~~~~~~~~~~~  273 (310)
                      .++.++.+++..++||++   -|+.+++++..+.++|+|+|.|+    +.+....-....+.++.+.+.
T Consensus       331 ~~~~i~~lr~~~~~Pviv---Kgv~~~e~A~~a~~aGad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v~  396 (511)
T 1kbi_A          331 TWKDIEELKKKTKLPIVI---KGVQRTEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILE  396 (511)
T ss_dssp             CHHHHHHHHHHCSSCEEE---EEECSHHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCcEEE---EeCCCHHHHHHHHHcCCCEEEEcCCCCccCCCCCchHHHHHHHHHHHH
Confidence            578889998877899963   57778999999999999999994    333333344566677777774

>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=86.62  E-value=1.4  Score=39.78  Aligned_cols=63  Identities=17%  Similarity=0.226  Sum_probs=40.3

Q ss_pred             HHHHHHHhc--CCCCEEEEccCCCCCHHHHH---HHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          211 DLVMQTKQL--GRLPVVHFAAGGVATPADAA---MMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di~---~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      ++++.+.+.  .++||++ -.|+.++.+.+.   .+.++|||++++..-.|..++.....+-|....++
T Consensus        61 ~v~~~~~~~~~grvpvia-Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a  128 (300)
T 3eb2_A           61 AVVRATIEAAQRRVPVVA-GVASTSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIESYFRAIADA  128 (300)
T ss_dssp             HHHHHHHHHHTTSSCBEE-EEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCcEEE-eCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHH
Confidence            344444442  4789963 445554444433   44467999999999999888877666666555554

>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}

Probab=86.61  E-value=7.2  Score=35.53  Aligned_cols=135  Identities=15%  Similarity=0.019  Sum_probs=67.7

Q ss_pred             ccceeeecCCccccCCC-HHHHHHHHHcCCcEEEecccccchhh--hcCCCCCCCChHHHHHHHhhc----CcceEeecc
Q 037779           28 VGLAQMLRGGVIMDVVT-PEQARIAEEAGACAVMALERVPADIR--AQGGVARMSDPQLIKQIKSSV----TIPVMAKAR  100 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~~~-~~~a~~~~~~Ga~~I~~l~~~~~d~r--~~~G~~~~~~~~~i~~i~~~~----~lPv~~kd~  100 (310)
                      .|+..=+.-|. -...+ .+.++.++++|+.++ .++......+  +.+|..+.+..+.+.+|+..+    +-++.+..+
T Consensus       102 ~PviaD~d~Gy-g~~~~v~~tv~~l~~aGaagv-~iED~~~~k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~AR  179 (318)
T 1zlp_A          102 LCVVVDGDTGG-GGPLNVQRFIRELISAGAKGV-FLEDQVWPKKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVAR  179 (318)
T ss_dssp             SEEEEECTTCS-SSHHHHHHHHHHHHHTTCCEE-EEECBCSSCCCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEE
T ss_pred             CCEEEeCCCCC-CCHHHHHHHHHHHHHcCCcEE-EECCCCCCccccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEEEe
Confidence            35555555552 11111 367999999999998 4541110011  112222333334444544332    233444433


Q ss_pred             ccc---------hHHHHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecC----C-HHHHHHHHHhCCCEEEEe
Q 037779          101 IGH---------FVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCR----N-LGESLRRIREGAAMIRTK  166 (310)
Q Consensus       101 i~~---------~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~----t-~~ea~~a~~~Gad~I~v~  166 (310)
                      ...         .+.++.+.++|||.|......+++++.+....  ..+++++.+.    + .-......++|...+...
T Consensus       180 tda~a~~gl~~ai~Ra~Ay~eAGAd~i~~e~~~~~e~~~~i~~~--l~~P~lan~~~~g~~~~~~~~eL~~lGv~~v~~~  257 (318)
T 1zlp_A          180 TDARAPHGLEEGIRRANLYKEAGADATFVEAPANVDELKEVSAK--TKGLRIANMIEGGKTPLHTPEEFKEMGFHLIAHS  257 (318)
T ss_dssp             ECTHHHHHHHHHHHHHHHHHHTTCSEEEECCCCSHHHHHHHHHH--SCSEEEEEECTTSSSCCCCHHHHHHHTCCEEEEC
T ss_pred             eHHhhhcCHHHHHHHHHHHHHcCCCEEEEcCCCCHHHHHHHHHh--cCCCEEEEeccCCCCCCCCHHHHHHcCCeEEEEc
Confidence            321         24567888899999985444333444444443  3466654322    1 112345556798887763

>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A

Probab=86.54  E-value=4.7  Score=36.48  Aligned_cols=63  Identities=19%  Similarity=0.100  Sum_probs=37.4

Q ss_pred             HHHHHHHhc--CCCCEEEEccCCCCCHHHHH---HHHHcCCCEEEEccccc---cCCCHHHHHHHHHHHHHc
Q 037779          211 DLVMQTKQL--GRLPVVHFAAGGVATPADAA---MMMQLGCDGVFVGSGVF---KSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di~---~~~~~GadgV~VGsai~---~~~dp~~~~~~~~~~~~~  274 (310)
                      ++++.+.+.  .++||++ -.|+.++.+.+.   .+.++|||++++..-.|   ..++.....+-|....++
T Consensus        65 ~v~~~~~~~~~grvpvia-Gvg~~~t~~ai~la~~A~~~Gadavlv~~Pyy~~~~~~s~~~l~~~f~~va~a  135 (309)
T 3fkr_A           65 VLTRTILEHVAGRVPVIV-TTSHYSTQVCAARSLRAQQLGAAMVMAMPPYHGATFRVPEAQIFEFYARVSDA  135 (309)
T ss_dssp             HHHHHHHHHHTTSSCEEE-ECCCSSHHHHHHHHHHHHHTTCSEEEECCSCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCcEEE-ecCCchHHHHHHHHHHHHHcCCCEEEEcCCCCccCCCCCHHHHHHHHHHHHHh
Confidence            344444442  4799952 345555444433   44467999999999987   345655555555554444

>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*

Probab=85.92  E-value=16  Score=32.86  Aligned_cols=81  Identities=16%  Similarity=0.103  Sum_probs=49.0

Q ss_pred             HHHHHHHHcCCCeeee-cCC-------CC----hhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEE-EEecCCC
Q 037779          105 VEAQILEAIGVDYVDE-SEV-------LT----PADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMI-RTKGEAG  170 (310)
Q Consensus       105 ~~~~~~~~aGad~v~~-~~~-------~~----~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I-~v~g~~~  170 (310)
                      +.++...+.|||.|.+ ...       .+    ...+...++. ...++++.+++.+++.++.+++.|+++| -++|.  
T Consensus        56 ~~a~~~v~~GAdIIDIGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~~~vpiSIDT~~~~Va~aAl~aGa~iINdVsg~--  133 (294)
T 2dqw_A           56 ERAREMVAEGADILDLGAESTRPGAAPVPVEEEKRRLLPVLEAVLSLGVPVSVDTRKPEVAEEALKLGAHLLNDVTGL--  133 (294)
T ss_dssp             HHHHHHHHHTCSEEEEECC-----------CCHHHHHHHHHHHHHTTCSCEEEECSCHHHHHHHHHHTCSEEECSSCS--
T ss_pred             HHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhCCCEEEECCCC--
Confidence            4566777899999872 111       11    1223333333 2127899999999999999999999987 34432  


Q ss_pred             CCchHHHHHHHHHhhccee
Q 037779          171 TGNIVEAVRHVRSVMGDIR  189 (310)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~  189 (310)
                        ...+.++.+++++..+.
T Consensus       134 --~d~~m~~v~a~~~~~vV  150 (294)
T 2dqw_A          134 --RDERMVALAARHGVAAV  150 (294)
T ss_dssp             --CCHHHHHHHHHHTCEEE
T ss_pred             --CChHHHHHHHHhCCCEE
Confidence              22344555555554433

>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}

Probab=85.89  E-value=16  Score=33.61  Aligned_cols=47  Identities=11%  Similarity=0.060  Sum_probs=38.2

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEcccccc
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFK  257 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~  257 (310)
                      +++..+.+++..++||  ++.+.+.+++++.++++.| +|.|.+--.-+.
T Consensus       225 ~~~~~~~l~~~~~iPI--~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~G  272 (379)
T 2rdx_A          225 SYEECQQVRRVADQPM--KLDECVTGLHMAQRIVADRGAEICCLKISNLG  272 (379)
T ss_dssp             SHHHHHHHHTTCCSCE--EECTTCCSHHHHHHHHHHTCCSEEEEETTTTT
T ss_pred             CHHHHHHHHhhCCCCE--EEeCCcCCHHHHHHHHHcCCCCEEEEeccccC
Confidence            6777788888778999  5689999999999999864 899998665544

>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*

Probab=85.85  E-value=1.4  Score=37.47  Aligned_cols=75  Identities=24%  Similarity=0.259  Sum_probs=48.9

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      .+.+++.++.+.+.|++.|..-+..++.  .+.|. ....++.++++++..++|+++-..+ +.+.+..+.++|+++|.
T Consensus       116 sv~t~~~~~~a~~~gaD~i~~~~~f~~~--~~~g~-~~~~~~~l~~~~~~~~~pvia~GGI-~~~nv~~~~~~Ga~gv~  190 (221)
T 1yad_A          116 SVHSLEEAVQAEKEDADYVLFGHVFETD--CKKGL-EGRGVSLLSDIKQRISIPVIAIGGM-TPDRLRDVKQAGADGIA  190 (221)
T ss_dssp             EECSHHHHHHHHHTTCSEEEEECCC-------------CHHHHHHHHHHHCCSCEEEESSC-CGGGHHHHHHTTCSEEE
T ss_pred             EcCCHHHHHHHHhCCCCEEEECCccccC--CCCCC-CCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCCEEE
Confidence            3456788888999999998432111111  11111 0123677888888789999998888 44667777889999987

>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}

Probab=85.83  E-value=20  Score=32.40  Aligned_cols=67  Identities=18%  Similarity=0.223  Sum_probs=40.3

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGad  116 (310)
                      +.++.+.+.|+++|..+.  .|.+     +..+...   +.++.+.+.+  .+||++...-..    .+.++.+.++|||
T Consensus        36 ~lv~~li~~Gv~gl~v~G--tTGE-----~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gad  108 (318)
T 3qfe_A           36 RYYAYLARSGLTGLVILG--TNAE-----AFLLTREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAGAN  108 (318)
T ss_dssp             HHHHHHHTTTCSEEEESS--GGGT-----GGGSCHHHHHHHHHHHHHHHCTTSCEEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHcCCCEEEeCc--cccC-----hhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcCCC
Confidence            678889999999985441  0100     1112222   2344444444  589998754332    2456677789999


Q ss_pred             eee
Q 037779          117 YVD  119 (310)
Q Consensus       117 ~v~  119 (310)
                      +++
T Consensus       109 avl  111 (318)
T 3qfe_A          109 YVL  111 (318)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            988

>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}

Probab=85.64  E-value=0.99  Score=39.19  Aligned_cols=23  Identities=13%  Similarity=-0.012  Sum_probs=16.8

Q ss_pred             eecCCHHHHHHHHHhCCCEEEEe
Q 037779          144 CGCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       144 ~~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                      +.+.|.+++..|.+.|||=|=..
T Consensus         6 vc~~s~~~a~~A~~~GAdRIELc   28 (224)
T 2bdq_A            6 FCAENLTDLTRLDKAIISRVELC   28 (224)
T ss_dssp             EEEETTTTGGGCCTTTCCEEEEE
T ss_pred             EEECCHHHHHHHHHcCCCEEEEc
Confidence            34567778888888999877544

>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*

Probab=85.61  E-value=3.9  Score=40.06  Aligned_cols=76  Identities=8%  Similarity=-0.072  Sum_probs=46.3

Q ss_pred             cCCCHHHHHHHHHcC---CcEEEecccccchhhhcCCCC-CCCChHHHHHHHhh------cCcceEeeccccchHHHHHH
Q 037779           41 DVVTPEQARIAEEAG---ACAVMALERVPADIRAQGGVA-RMSDPQLIKQIKSS------VTIPVMAKARIGHFVEAQIL  110 (310)
Q Consensus        41 ~~~~~~~a~~~~~~G---a~~I~~l~~~~~d~r~~~G~~-~~~~~~~i~~i~~~------~~lPv~~kd~i~~~~~~~~~  110 (310)
                      ++.+++.++.+.+.|   +|.|..-.-.||.-  +.+.. ....++.++++++.      .++|+.+-..|.. +.+..+
T Consensus       114 S~ht~eea~~A~~~G~~~aDYv~~Gpvf~T~t--K~~~~~~~~G~~~l~~i~~~~~~~~~~~iPvvAIGGI~~-~ni~~v  190 (540)
T 3nl6_A          114 SVGFPEEVDELSKMGPDMVDYIGVGTLFPTLT--KKNPKKAPMGTAGAIRVLDALERNNAHWCRTVGIGGLHP-DNIERV  190 (540)
T ss_dssp             EECSHHHHHHHHHTCC--CCEEEESCCSCCCC--CC----CCCHHHHHHHHHHHHHHTTCTTCEEEEESSCCT-TTHHHH
T ss_pred             ECCCHHHHHHHHHcCCCCCCEEEEcCCCCCCC--CCCcCCCCCCHHHHHHHHHHHHhhccCCCCEEEEcCCCH-HHHHHH
Confidence            456788899999999   99984321122211  11100 01126677777665      4899999888853 345555


Q ss_pred             HH--------cCCCeee
Q 037779          111 EA--------IGVDYVD  119 (310)
Q Consensus       111 ~~--------aGad~v~  119 (310)
                      .+        +|+++|.
T Consensus       191 ~~~~~~~g~~~GadgvA  207 (540)
T 3nl6_A          191 LYQCVSSNGKRSLDGIC  207 (540)
T ss_dssp             HHHCBCTTSSCBCSCEE
T ss_pred             HHhhcccccccCceEEE
Confidence            54        7899987

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=85.55  E-value=2.7  Score=35.26  Aligned_cols=68  Identities=21%  Similarity=0.193  Sum_probs=47.9

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeee
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      .+.++.+.+.|++.| .+++-.+ ...+.    ....+.++++++.. ++|+.+..++. .+.+..+.++|||++.
T Consensus       117 ~~~~~~~~~~g~d~i-~v~~g~~-g~~~~----~~~~~~i~~l~~~~~~~~i~~~gGI~-~~~~~~~~~~Gad~vv  185 (211)
T 3f4w_A          117 PARVRLLEEAGADML-AVHTGTD-QQAAG----RKPIDDLITMLKVRRKARIAVAGGIS-SQTVKDYALLGPDVVI  185 (211)
T ss_dssp             HHHHHHHHHHTCCEE-EEECCHH-HHHTT----CCSHHHHHHHHHHCSSCEEEEESSCC-TTTHHHHHTTCCSEEE
T ss_pred             HHHHHHHHHcCCCEE-EEcCCCc-ccccC----CCCHHHHHHHHHHcCCCcEEEECCCC-HHHHHHHHHcCCCEEE
Confidence            377899999999987 3321111 11121    12478899999886 89999888775 4677788899999987

>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}

Probab=85.49  E-value=22  Score=32.58  Aligned_cols=67  Identities=15%  Similarity=0.137  Sum_probs=38.3

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHH--HhhcCcceEeeccccc----hHHHHHHHHcCCCeee
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQI--KSSVTIPVMAKARIGH----FVEAQILEAIGVDYVD  119 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i--~~~~~lPv~~kd~i~~----~~~~~~~~~aGad~v~  119 (310)
                      +.++.+.+.|+++|..+-  .|.+     +..+...+..+-+  ...-++||++...-..    .+.++.+.++|||+++
T Consensus        51 ~lv~~li~~Gv~Gl~v~G--tTGE-----~~~Ls~eEr~~vi~~~~~grvpViaGvg~~st~eai~la~~A~~~Gadavl  123 (344)
T 2hmc_A           51 RKGKELIADGMSAVVYCG--SMGD-----WPLLTDEQRMEGVERLVKAGIPVIVGTGAVNTASAVAHAVHAQKVGAKGLM  123 (344)
T ss_dssp             HHHHHHHHTTCCCEEESS--GGGT-----GGGSCHHHHHHHHHHHHHTTCCEEEECCCSSHHHHHHHHHHHHHHTCSEEE
T ss_pred             HHHHHHHHcCCCEEEeCc--cCcC-----hhhCCHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEE
Confidence            678888999999985441  0101     1112222222212  2223689988754432    2455677789999998

>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*

Probab=85.45  E-value=2.1  Score=38.42  Aligned_cols=60  Identities=17%  Similarity=0.253  Sum_probs=36.1

Q ss_pred             HHHHHHHhc--CCCCEEEEccCCCCCHHHH---HHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 037779          211 DLVMQTKQL--GRLPVVHFAAGGVATPADA---AMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQA  271 (310)
Q Consensus       211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di---~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~  271 (310)
                      ++++.+.+.  .++||+ +-.|+.++.+.+   +.+.++|||++++..-.|..++.....+-|...
T Consensus        58 ~v~~~~~~~~~gr~pvi-~Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~i  122 (291)
T 3a5f_A           58 ETIKFVIDKVNKRIPVI-AGTGSNNTAASIAMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAV  122 (291)
T ss_dssp             HHHHHHHHHHTTSSCEE-EECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CT
T ss_pred             HHHHHHHHHhCCCCcEE-EeCCcccHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHH
Confidence            344444432  468996 344554434333   334467999999999999877765555444443

>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*

Probab=85.39  E-value=7.2  Score=34.98  Aligned_cols=141  Identities=16%  Similarity=0.159  Sum_probs=77.4

Q ss_pred             ChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeecC-CCChhHHHHHHHhcCCCCcEEeecC---CHHHHHHH
Q 037779           80 DPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESE-VLTPADEENHINKHNFRVPFVCGCR---NLGESLRR  155 (310)
Q Consensus        80 ~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~-~~~~~~~~~~~~~~~~~l~v~~~v~---t~~ea~~a  155 (310)
                      -+..++++++..++|++--.+  +...++.+.+. +|.+-+.+ .....++.+.+.+  .+.++++...   |++|.+.+
T Consensus        79 GL~~L~~~~~e~Glp~~Tev~--d~~~v~~l~~~-vd~lqIgA~~~~n~~LLr~va~--~gkPVilK~G~~~t~~ei~~a  153 (285)
T 3sz8_A           79 GLKIFAEVKARFGVPVITDVH--EAEQAAPVAEI-ADVLQVPAFLARQTDLVVAIAK--AGKPVNVKKPQFMSPTQLKHV  153 (285)
T ss_dssp             HHHHHHHHHHHHCCCEEEECC--SGGGHHHHHTT-CSEEEECGGGTTCHHHHHHHHH--TSSCEEEECCTTSCGGGTHHH
T ss_pred             HHHHHHHHHHhcCCeEEEEeC--CHHHHHHHHHh-CCEEEECccccCCHHHHHHHHc--cCCcEEEeCCCCCCHHHHHHH
Confidence            456677888888999975433  22455666667 88887442 2344456666654  4577777642   55554443


Q ss_pred             H----HhCCC-EEEEe-cCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEc
Q 037779          156 I----REGAA-MIRTK-GEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFA  228 (310)
Q Consensus       156 ~----~~Gad-~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia  228 (310)
                      +    +.|.+ ++-.+ |..|+.+                               +...+...+..+++.. .+||+.-+
T Consensus       154 ve~i~~~Gn~~i~L~erg~~y~~~-------------------------------~~~vdl~~i~~lk~~~~~~pV~~D~  202 (285)
T 3sz8_A          154 VSKCGEVGNDRVMLCERGSSFGYD-------------------------------NLVVDMLGFRQMAETTGGCPVIFDV  202 (285)
T ss_dssp             HHHHHHTTCCCEEEEECCEECSSS-------------------------------CEECCTTHHHHHHHHTTSCCEEEET
T ss_pred             HHHHHHcCCCcEEEEeCCCCCCCC-------------------------------cCccCHHHHHHHHHhCCCCCEEEeC
Confidence            3    45664 44443 2222111                               0112334455566655 48995311


Q ss_pred             c-------------CCCCC--HHHHHHHHHcCCCEEEEccccc
Q 037779          229 A-------------GGVAT--PADAAMMMQLGCDGVFVGSGVF  256 (310)
Q Consensus       229 ~-------------GGI~t--~~di~~~~~~GadgV~VGsai~  256 (310)
                      .             ||-..  +.-...+..+||||+++=.-+.
T Consensus       203 sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GA~gl~IE~H~~  245 (285)
T 3sz8_A          203 THSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAHPD  245 (285)
T ss_dssp             TTTCC---------------HHHHHHHHHHHCCSEEEEEEESC
T ss_pred             CCccccCCCcCCCCCCchhhHHHHHHHHHHhCCCEEEEEeccC
Confidence            1             23110  2334567789999999977665

>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9

Probab=85.23  E-value=16  Score=32.77  Aligned_cols=115  Identities=14%  Similarity=0.053  Sum_probs=64.2

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCC-------CCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCe
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGG-------VARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDY  117 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G-------~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~  117 (310)
                      ..+.+.+.++|+.++  +| .||-. ...|       ...+...+.++.|+.+..+-+.=-....+.+++....++|+|.
T Consensus       111 g~~Le~lk~~Gf~Gv--~N-~ptvg-lidG~fr~~LEE~gm~~~~eve~I~~A~~~gL~Ti~~v~~~eeA~amA~agpDi  186 (286)
T 2p10_A          111 STFLRELKEIGFAGV--QN-FPTVG-LIDGLFRQNLEETGMSYAQEVEMIAEAHKLDLLTTPYVFSPEDAVAMAKAGADI  186 (286)
T ss_dssp             HHHHHHHHHHTCCEE--EE-CSCGG-GCCHHHHHHHHHTTCCHHHHHHHHHHHHHTTCEECCEECSHHHHHHHHHHTCSE
T ss_pred             HHHHHHHHHhCCceE--EE-CCCcc-cccchhhhhHhhcCCCHHHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHcCCCE
Confidence            366799999999998  33 12100 0000       0112224455555554433222222233557888888999999


Q ss_pred             eeecCC------------CChhH-------HHHHHHhcCCCCcEEee---cCCHHHHHHHHHh--CCCEE
Q 037779          118 VDESEV------------LTPAD-------EENHINKHNFRVPFVCG---CRNLGESLRRIRE--GAAMI  163 (310)
Q Consensus       118 v~~~~~------------~~~~~-------~~~~~~~~~~~l~v~~~---v~t~~ea~~a~~~--Gad~I  163 (310)
                      |..+-.            .+..+       +.+.+++..+++.+++.   +.+++|+..+++.  |++-+
T Consensus       187 I~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpeDv~~~l~~t~G~~G~  256 (286)
T 2p10_A          187 LVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPEDARFILDSCQGCHGF  256 (286)
T ss_dssp             EEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHHHHHHHHHHCTTCCEE
T ss_pred             EEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHhcCCCccEE
Confidence            873221            12222       22333444567777665   4889999999988  77643

>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}

Probab=85.16  E-value=4.4  Score=36.75  Aligned_cols=67  Identities=16%  Similarity=0.215  Sum_probs=42.2

Q ss_pred             HHHHHHHhc--CCCCEEEEccCCCCCHHHHH---HHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChh
Q 037779          211 DLVMQTKQL--GRLPVVHFAAGGVATPADAA---MMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPD  279 (310)
Q Consensus       211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di~---~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~  279 (310)
                      ++++.+.+.  .++||++ -.|+ ++.+.+.   .+.++|||++++..-.|..++.....+-|....++-.-|-
T Consensus        69 ~vi~~~~~~~~grvpVia-Gvg~-st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPi  140 (314)
T 3d0c_A           69 QVATRVTELVNGRATVVA-GIGY-SVDTAIELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIEALDAPS  140 (314)
T ss_dssp             HHHHHHHHHHTTSSEEEE-EECS-SHHHHHHHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHSSSCE
T ss_pred             HHHHHHHHHhCCCCeEEe-cCCc-CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCE
Confidence            344444432  4789963 4566 6555443   3345799999999999988877666655655555444453

>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*

Probab=84.97  E-value=0.9  Score=42.22  Aligned_cols=90  Identities=12%  Similarity=0.048  Sum_probs=57.2

Q ss_pred             ccceeeecCCccccCCC-HHHHHHHHHcC-CcEEEecccc----cch--h--------hhcCC---CC-CCCChHHHHHH
Q 037779           28 VGLAQMLRGGVIMDVVT-PEQARIAEEAG-ACAVMALERV----PAD--I--------RAQGG---VA-RMSDPQLIKQI   87 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~~~-~~~a~~~~~~G-a~~I~~l~~~----~~d--~--------r~~~G---~~-~~~~~~~i~~i   87 (310)
                      .|+.++|+-+.  +... .+.++.+.++| +++|...|..    ..|  .        ..++|   .. .....+.++++
T Consensus       194 ~PV~vKi~p~~--d~~~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v  271 (354)
T 4ef8_A          194 HSFGVKMPPYF--DFAHFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAF  271 (354)
T ss_dssp             SCEEEEECCCC--SHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHH
T ss_pred             CCeEEEecCCC--CHHHHHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHH
Confidence            57788888753  1111 24567777888 9998654411    001  0        11222   10 01235678888


Q ss_pred             Hhhc-CcceEeeccccchHHHHHHHHcCCCeee
Q 037779           88 KSSV-TIPVMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        88 ~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      ++.. ++||+....|.+.+++..+..+|||.|-
T Consensus       272 ~~~~~~ipII~~GGI~s~~da~~~l~aGAd~V~  304 (354)
T 4ef8_A          272 YRRCPGKLIFGCGGVYTGEDAFLHVLAGASMVQ  304 (354)
T ss_dssp             HHHCTTSEEEEESCCCSHHHHHHHHHHTEEEEE
T ss_pred             HHhCCCCCEEEECCcCCHHHHHHHHHcCCCEEE
Confidence            8876 7999999998877888777789999986

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=84.97  E-value=3.8  Score=36.53  Aligned_cols=43  Identities=26%  Similarity=0.324  Sum_probs=34.5

Q ss_pred             ChHHHHHHHhhcCcceE--eeccccchHHHHHHHHcCCCeee-ecC
Q 037779           80 DPQLIKQIKSSVTIPVM--AKARIGHFVEAQILEAIGVDYVD-ESE  122 (310)
Q Consensus        80 ~~~~i~~i~~~~~lPv~--~kd~i~~~~~~~~~~~aGad~v~-~~~  122 (310)
                      +.+.++++++.+++|++  +...+.+.+.+..+.++|||.+. .+.
T Consensus       195 ~~~~i~~l~~~~~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsa  240 (297)
T 2zbt_A          195 PFELVKWVHDHGRLPVVNFAAGGIATPADAALMMHLGMDGVFVGSG  240 (297)
T ss_dssp             CHHHHHHHHHHSSCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGG
T ss_pred             hHHHHHHHHHhcCCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchH
Confidence            46788999988899988  77777566788888899999987 443

>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}

Probab=84.88  E-value=5.8  Score=35.87  Aligned_cols=63  Identities=11%  Similarity=0.186  Sum_probs=38.9

Q ss_pred             HHHHHHHhc--CCCCEEEEccCCCCCHHHHH---HHHHcCC-CEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          211 DLVMQTKQL--GRLPVVHFAAGGVATPADAA---MMMQLGC-DGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di~---~~~~~Ga-dgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      ++++.+.+.  .++||++ -.|+.++.+.+.   .+.++|+ |++++..-.+..++.....+-|....++
T Consensus        64 ~v~~~~~~~~~grvpVia-Gvg~~~t~~ai~la~~A~~~Ga~davlv~~P~y~~~s~~~l~~~f~~va~a  132 (311)
T 3h5d_A           64 ELFAAVQKVVNGRVPLIA-GVGTNDTRDSIEFVKEVAEFGGFAAGLAIVPYYNKPSQEGMYQHFKAIADA  132 (311)
T ss_dssp             HHHHHHHHHSCSSSCEEE-ECCCSSHHHHHHHHHHHHHSCCCSEEEEECCCSSCCCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCCCCcEEE-eCCCcCHHHHHHHHHHHHhcCCCcEEEEcCCCCCCCCHHHHHHHHHHHHHh
Confidence            344444443  4789953 344444333332   3345697 9999999998888776666555555554

>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A

Probab=84.86  E-value=24  Score=32.58  Aligned_cols=48  Identities=10%  Similarity=0.144  Sum_probs=36.5

Q ss_pred             cHHHHHHHHhc---------CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          209 PYDLVMQTKQL---------GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       209 ~~~l~~~i~~~---------~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                      ++++++.+.+.         .++|+|.=-++|+ +.+++++++++|..-|=++|.+-.
T Consensus       237 ~~~~L~~i~~~i~~~~g~~~~~vpLVlHGgSG~-~~e~i~~ai~~GV~KiNi~Tdl~~  293 (358)
T 1dos_A          237 TPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGS-TAQEIKDSVSYGVVKMNIDTDTQW  293 (358)
T ss_dssp             CTHHHHHHHHHHHHHHTCCTTCSCEEECSCTTC-CHHHHHHHHHTTEEEEEECHHHHH
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCcEEEeCCCCC-CHHHHHHHHHCCCeEEEEcHHHHH
Confidence            45566666552         4689876555577 478999999999999999997755

>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}

Probab=84.85  E-value=5.6  Score=36.62  Aligned_cols=53  Identities=19%  Similarity=0.323  Sum_probs=34.6

Q ss_pred             CCCCEEEEccCCCCCHHHHH---HHHHcCCCEEEEccccccC-CCHHHHHHHHHHHHH
Q 037779          220 GRLPVVHFAAGGVATPADAA---MMMQLGCDGVFVGSGVFKS-GDPVRRARAIVQAVT  273 (310)
Q Consensus       220 ~~iPVv~ia~GGI~t~~di~---~~~~~GadgV~VGsai~~~-~dp~~~~~~~~~~~~  273 (310)
                      .++||+ +-.|+.++.+.+.   .+.++|||++++..-.|.. ++.....+-|....+
T Consensus        91 grvpVi-aGvg~~st~eai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~IA~  147 (344)
T 2hmc_A           91 AGIPVI-VGTGAVNTASAVAHAVHAQKVGAKGLMVIPRVLSRGSVIAAQKAHFKAILS  147 (344)
T ss_dssp             TTCCEE-EECCCSSHHHHHHHHHHHHHHTCSEEEECCCCSSSTTCHHHHHHHHHHHHH
T ss_pred             CCCcEE-EecCCCCHHHHHHHHHHHHhcCCCEEEECCCccCCCCCHHHHHHHHHHHHh
Confidence            578996 3445554343333   3345799999999999987 676655555555555

>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron}

Probab=84.81  E-value=2.7  Score=38.09  Aligned_cols=62  Identities=18%  Similarity=0.180  Sum_probs=37.9

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHH----HHH---hhcCcceEeeccccchHHHHHHHH--cCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIK----QIK---SSVTIPVMAKARIGHFVEAQILEA--IGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~----~i~---~~~~lPv~~kd~i~~~~~~~~~~~--aGad  116 (310)
                      +.|+.+.+.||+.| +++-         |.......+.++    .++   +.+++|+++-..  .++-++...+  +|++
T Consensus        41 ~~A~~~v~~GAdiI-DIg~---------g~~~v~~~eem~rvv~~i~~~~~~~~vpisIDT~--~~~V~eaaL~~~~Ga~  108 (300)
T 3k13_A           41 SIARQQVEDGALVI-DVNM---------DDGLLDARTEMTTFLNLIMSEPEIARVPVMIDSS--KWEVIEAGLKCLQGKS  108 (300)
T ss_dssp             HHHHHHHHTTCSEE-EEEC---------CCTTSCHHHHHHHHHHHHHTCHHHHTSCEEEECS--CHHHHHHHHHHCSSCC
T ss_pred             HHHHHHHHCCCCEE-EECC---------CCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEeCC--CHHHHHHHHHhcCCCC
Confidence            67999999999988 6641         111111122222    232   446899987654  3456666666  7999


Q ss_pred             eee
Q 037779          117 YVD  119 (310)
Q Consensus       117 ~v~  119 (310)
                      .|-
T Consensus       109 iIN  111 (300)
T 3k13_A          109 IVN  111 (300)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            876

>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C

Probab=84.61  E-value=10  Score=27.99  Aligned_cols=57  Identities=16%  Similarity=0.312  Sum_probs=38.8

Q ss_pred             cHHHHHHHHhc---CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779          209 PYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV  272 (310)
Q Consensus       209 ~~~l~~~i~~~---~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~  272 (310)
                      ..++++.+++.   .++|++++  .+-.+.+...++++.|+++++     .++-++.+....+...+
T Consensus        61 g~~~~~~l~~~~~~~~~pii~~--s~~~~~~~~~~~~~~Ga~~~l-----~KP~~~~~L~~~i~~~l  120 (122)
T 3gl9_A           61 GFTVLKKLQEKEEWKRIPVIVL--TAKGGEEDESLALSLGARKVM-----RKPFSPSQFIEEVKHLL  120 (122)
T ss_dssp             HHHHHHHHHTSTTTTTSCEEEE--ESCCSHHHHHHHHHTTCSEEE-----ESSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccCCCEEEE--ecCCchHHHHHHHhcChhhhc-----cCCCCHHHHHHHHHHHh
Confidence            46677777653   46899755  444578899999999999874     45556665555554443

>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}

Probab=84.59  E-value=23  Score=33.81  Aligned_cols=47  Identities=19%  Similarity=0.065  Sum_probs=35.0

Q ss_pred             HHHHHHHHhcC-CCC-EEEEccC--CCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          210 YDLVMQTKQLG-RLP-VVHFAAG--GVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       210 ~~l~~~i~~~~-~iP-Vv~ia~G--GI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                      ++.++.+++.. ++| +|.=+.+  |+ +.++++++.+.|+..+=||+.++.
T Consensus       244 ~e~~~~L~~~v~~~P~LVlhghStDy~-~~e~l~~~V~~GiaklNVgp~Lt~  294 (450)
T 3txv_A          244 RARAEKLSATLGQLHGMVFEAHSTDYQ-TPDALRELVADGFAILKVGPGLTF  294 (450)
T ss_dssp             TTTTSHHHHGGGTSTTCEEEESCCTTC-CHHHHHHHHHTTEEEEEECHHHHH
T ss_pred             HHHHHHHHHHhccCCCEEEecCCCCCC-CHHHHHHHHHcCCcEEEEChHHHH
Confidence            44555555554 678 7643344  55 689999999999999999999886

>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*

Probab=84.22  E-value=5.2  Score=33.67  Aligned_cols=105  Identities=17%  Similarity=0.087  Sum_probs=57.8

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc--------chH-HHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG--------HFV-EAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~--------~~~-~~~~~~~aGad  116 (310)
                      .+++.+.++|++.+..        +...|      .+.++.+++..+++++...-..        ..+ .+....+.|++
T Consensus        69 ~~v~~~~~~Gad~vtv--------h~~~g------~~~i~~~~~~~gv~vl~~t~~~~~~~~~~~~v~~~~~~a~~~G~~  134 (208)
T 2czd_A           69 LIARKVFGAGADYVIV--------HTFVG------RDSVMAVKELGEIIMVVEMSHPGALEFINPLTDRFIEVANEIEPF  134 (208)
T ss_dssp             HHHHHHHHTTCSEEEE--------ESTTC------HHHHHHHHTTSEEEEECCCCSGGGGTTTGGGHHHHHHHHHHHCCS
T ss_pred             HHHHHHHhcCCCEEEE--------eccCC------HHHHHHHHHhCCcEEEEecCCcchhhHHHHHHHHHHHHHHHhCCc
Confidence            5788999999999843        22322      3457777765444444331111        111 23455668999


Q ss_pred             eeeecCCCChhHHHHHHHh-cCCCCcEEe-ecCCH-HHHHHHHHhCCCEEEEe
Q 037779          117 YVDESEVLTPADEENHINK-HNFRVPFVC-GCRNL-GESLRRIREGAAMIRTK  166 (310)
Q Consensus       117 ~v~~~~~~~~~~~~~~~~~-~~~~l~v~~-~v~t~-~ea~~a~~~Gad~I~v~  166 (310)
                      ++..... .++++ +.+++ .+.+..++. +++.. ..+..+.+.|+|++.+.
T Consensus       135 G~~~~~~-~~~~i-~~lr~~~~~~~~iv~gGI~~~g~~~~~~~~aGad~vvvG  185 (208)
T 2czd_A          135 GVIAPGT-RPERI-GYIRDRLKEGIKILAPGIGAQGGKAKDAVKAGADYIIVG  185 (208)
T ss_dssp             EEECCCS-STHHH-HHHHHHSCTTCEEEECCCCSSTTHHHHHHHHTCSEEEEC
T ss_pred             EEEECCC-ChHHH-HHHHHhCCCCeEEEECCCCCCCCCHHHHHHcCCCEEEEC
Confidence            9863222 23333 34444 333333322 34431 15667778899998875

>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*

Probab=84.16  E-value=3.8  Score=36.99  Aligned_cols=83  Identities=10%  Similarity=0.116  Sum_probs=47.6

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHH-------HHHHHhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQL-------IKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYV  118 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~-------i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v  118 (310)
                      +.|+.+.+.||+.| +++-.+|.+    |+......+.       ++.+++. ++|+++-.+  +.+-++.+.++|++.|
T Consensus        50 ~~a~~~v~~GAdiI-DIGgeSTrP----ga~~v~~~eE~~Rv~pvi~~l~~~-~vpiSIDT~--~~~Va~aAl~aGa~iI  121 (294)
T 2y5s_A           50 RRAERMIAEGADLL-DIGGESTRP----GAPPVPLDEELARVIPLVEALRPL-NVPLSIDTY--KPAVMRAALAAGADLI  121 (294)
T ss_dssp             HHHHHHHHTTCSEE-EEESSCCST----TCCCCCHHHHHHHHHHHHHHHGGG-CSCEEEECC--CHHHHHHHHHHTCSEE
T ss_pred             HHHHHHHHCCCCEE-EECCCcCCC----CCCCCCHHHHHHHHHHHHHHHhhC-CCeEEEECC--CHHHHHHHHHcCCCEE
Confidence            67999999999998 664222211    1111111222       3344433 889877644  3356778888999999


Q ss_pred             eecCCCChhHHHHHHHhc
Q 037779          119 DESEVLTPADEENHINKH  136 (310)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~  136 (310)
                      -.......++....+.++
T Consensus       122 NdVsg~~d~~m~~~~a~~  139 (294)
T 2y5s_A          122 NDIWGFRQPGAIDAVRDG  139 (294)
T ss_dssp             EETTTTCSTTHHHHHSSS
T ss_pred             EECCCCCchHHHHHHHHh
Confidence            732222234555555443

>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*

Probab=84.12  E-value=14  Score=33.05  Aligned_cols=92  Identities=15%  Similarity=0.060  Sum_probs=56.4

Q ss_pred             CCCCCCChHHHHHHHhhcCcceEeecccc-c---h-HHHHHHHHcCCCeee-e---cC-CCCh----hHHHHHHHhcCCC
Q 037779           74 GVARMSDPQLIKQIKSSVTIPVMAKARIG-H---F-VEAQILEAIGVDYVD-E---SE-VLTP----ADEENHINKHNFR  139 (310)
Q Consensus        74 G~~~~~~~~~i~~i~~~~~lPv~~kd~i~-~---~-~~~~~~~~aGad~v~-~---~~-~~~~----~~~~~~~~~~~~~  139 (310)
                      |+..+.+.++++++. .++.||++|.... +   + .-++.+.+.|.+-|. .   +. ..+.    -..+..+++...+
T Consensus       117 gA~~~~n~~LLr~va-~~gkPVilK~G~~~t~~ei~~ave~i~~~Gn~~i~L~erg~~y~~~~~~vdl~~i~~lk~~~~~  195 (285)
T 3sz8_A          117 PAFLARQTDLVVAIA-KAGKPVNVKKPQFMSPTQLKHVVSKCGEVGNDRVMLCERGSSFGYDNLVVDMLGFRQMAETTGG  195 (285)
T ss_dssp             CGGGTTCHHHHHHHH-HTSSCEEEECCTTSCGGGTHHHHHHHHHTTCCCEEEEECCEECSSSCEECCTTHHHHHHHHTTS
T ss_pred             CccccCCHHHHHHHH-ccCCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCCCCCCCcCccCHHHHHHHHHhCCC
Confidence            445577899999977 5799999987653 2   2 234556678887654 2   11 1111    1233344444336


Q ss_pred             CcEEe-ecCC------------------HHHHHHHHHhCCC--EEEEe
Q 037779          140 VPFVC-GCRN------------------LGESLRRIREGAA--MIRTK  166 (310)
Q Consensus       140 l~v~~-~v~t------------------~~ea~~a~~~Gad--~I~v~  166 (310)
                      ++++. ..|+                  ..-+..|..+|||  +|=+|
T Consensus       196 ~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GA~gl~IE~H  243 (285)
T 3sz8_A          196 CPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAH  243 (285)
T ss_dssp             CCEEEETTTTCC---------------HHHHHHHHHHHCCSEEEEEEE
T ss_pred             CCEEEeCCCccccCCCcCCCCCCchhhHHHHHHHHHHhCCCEEEEEec
Confidence            88888 5677                  3345677789999  55554

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=84.07  E-value=6.6  Score=32.98  Aligned_cols=57  Identities=16%  Similarity=0.077  Sum_probs=40.5

Q ss_pred             HHHHHHHHhcCCCCEEEEccCCCCCHH-HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 037779          210 YDLVMQTKQLGRLPVVHFAAGGVATPA-DAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ  270 (310)
Q Consensus       210 ~~l~~~i~~~~~iPVv~ia~GGI~t~~-di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~  270 (310)
                      .+.++.+++..+.|+  .+.+.|++++ .+..+.++|+|+|.+...-.  +.+....+.+.+
T Consensus        50 ~~~i~~i~~~~~~~~--~v~l~v~d~~~~i~~~~~~gad~v~vh~~~~--~~~~~~~~~~~~  107 (220)
T 2fli_A           50 ADVVASMRKHSKLVF--DCHLMVVDPERYVEAFAQAGADIMTIHTEST--RHIHGALQKIKA  107 (220)
T ss_dssp             HHHHHHHHTTCCSEE--EEEEESSSGGGGHHHHHHHTCSEEEEEGGGC--SCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCE--EEEEeecCHHHHHHHHHHcCCCEEEEccCcc--ccHHHHHHHHHH
Confidence            667788877656677  4568888876 58888899999999976543  456555555543

>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*

Probab=83.99  E-value=16  Score=33.10  Aligned_cols=139  Identities=15%  Similarity=0.026  Sum_probs=72.6

Q ss_pred             ceEEEEeccCCC-ccccccceeeecCCccccC-CC-HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHH
Q 037779           12 NGAIYETTKKSP-FSVKVGLAQMLRGGVIMDV-VT-PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIK   88 (310)
Q Consensus        12 ~~~i~e~k~~sp-~~~~~~~~~~l~~g~i~~~-~~-~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~   88 (310)
                      +.++.||--.+| |+ ..++.     |...+. .. .+.|+.+.+.||+.| +++...+++..+.=+ .....+.++.++
T Consensus        47 p~i~m~I~n~tpdsf-~d~i~-----~~~~~~~~~~~~~A~~~v~~GAdiI-DIg~~StrP~~~~vs-~eee~~vV~~v~  118 (310)
T 2h9a_B           47 PRFALEVFDTPPTDW-PDILV-----EPFKDVINDPVAWAKKCVEYGADIV-ALRLVSAHPDGQNRS-GAELAEVCKAVA  118 (310)
T ss_dssp             CEEEEEEESSCCSSC-CHHHH-----GGGTTTTTCHHHHHHHHHHTTCSEE-EEECGGGCTTTTCCC-HHHHHHHHHHHH
T ss_pred             CeEEEEEeeCCCccc-chhhh-----hhhccHHHHHHHHHHHHHHcCCcEE-EEeCccCCCCCCCCC-HHHHHHHHHHHH
Confidence            345777777777 32 11111     122222 23 478999999999998 665222322211000 000133567778


Q ss_pred             hhcCcceEeecccc---chHHHHHHHHcCCC---eeeecCCCChhHHHHHHHhcCCCCcEEeecC-CHHHH----HHHHH
Q 037779           89 SSVTIPVMAKARIG---HFVEAQILEAIGVD---YVDESEVLTPADEENHINKHNFRVPFVCGCR-NLGES----LRRIR  157 (310)
Q Consensus        89 ~~~~lPv~~kd~i~---~~~~~~~~~~aGad---~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~-t~~ea----~~a~~  157 (310)
                      +.+++|+++-|--+   +.+-++.+.++|++   .|-.......+++...+.++  +.++++-.. +.+.+    .++.+
T Consensus       119 ~~~~vplsI~DT~~~~~~~~V~eaal~aga~~k~iINdvs~~~~~~~~~~aa~~--g~~vv~m~~~dv~~l~~~~~~a~~  196 (310)
T 2h9a_B          119 DAIDVPLMIIGCGVEEKDAEIFPVIGEALSGRNCLLSSATKDNYKPIVATCMVH--GHSVVASAPLDINLSKQLNIMIME  196 (310)
T ss_dssp             HHCSSCEEEECCSCHHHHHHHHHHHHHHTTTSCCEEEEECTTTHHHHHHHHHHH--TCEEEEECSSCHHHHHHHHHHHHT
T ss_pred             HhCCceEEEECCCCCCCCHHHHHHHHHhCCCCCCEEEECCCCccHHHHHHHHHh--CCCEEEEChhHHHHHHHHHHHHHH
Confidence            88899998833211   22456777889997   44422223445666655554  344444322 44433    23445


Q ss_pred             hCC
Q 037779          158 EGA  160 (310)
Q Consensus       158 ~Ga  160 (310)
                      +|.
T Consensus       197 ~Gi  199 (310)
T 2h9a_B          197 MNL  199 (310)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            676

>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*

Probab=83.95  E-value=5.8  Score=37.15  Aligned_cols=106  Identities=10%  Similarity=0.160  Sum_probs=68.4

Q ss_pred             HHHHHHHHcCCCeeeecCC-----------CChhHHHHHHHh--cCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCC
Q 037779          105 VEAQILEAIGVDYVDESEV-----------LTPADEENHINK--HNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGT  171 (310)
Q Consensus       105 ~~~~~~~~aGad~v~~~~~-----------~~~~~~~~~~~~--~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~  171 (310)
                      +.++.+.++|++.|-....           ++. +-.+.+.+  ...|++++.++.++..+..+.+. +|++.+...   
T Consensus       160 ~~a~~~k~aGa~~vk~q~fkprts~~~f~gl~~-egl~~L~~~~~~~Gl~~~te~~d~~~~~~l~~~-vd~lkIgs~---  234 (385)
T 3nvt_A          160 AVAESIKAKGLKLIRGGAFKPRTSPYDFQGLGL-EGLKILKRVSDEYGLGVISEIVTPADIEVALDY-VDVIQIGAR---  234 (385)
T ss_dssp             HHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTH-HHHHHHHHHHHHHTCEEEEECCSGGGHHHHTTT-CSEEEECGG---
T ss_pred             HHHHHHHHcCCCeEEcccccCCCChHhhcCCCH-HHHHHHHHHHHHcCCEEEEecCCHHHHHHHHhh-CCEEEECcc---
Confidence            3456677799999862211           222 33333333  33689999999999988888777 899888521   


Q ss_pred             CchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCC-CCHHHHHHHH----HcCC
Q 037779          172 GNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGV-ATPADAAMMM----QLGC  246 (310)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI-~t~~di~~~~----~~Ga  246 (310)
                                                        ....+.+++.+.+ .+.||+  ..=|. .|++++..+.    ..|.
T Consensus       235 ----------------------------------~~~n~~LL~~~a~-~gkPVi--lk~G~~~t~~e~~~Ave~i~~~Gn  277 (385)
T 3nvt_A          235 ----------------------------------NMQNFELLKAAGR-VDKPIL--LKRGLSATIEEFIGAAEYIMSQGN  277 (385)
T ss_dssp             ----------------------------------GTTCHHHHHHHHT-SSSCEE--EECCTTCCHHHHHHHHHHHHTTTC
T ss_pred             ----------------------------------cccCHHHHHHHHc-cCCcEE--EecCCCCCHHHHHHHHHHHHHcCC
Confidence                                              0124567777765 467995  35666 8898876555    3577


Q ss_pred             CEEEEc
Q 037779          247 DGVFVG  252 (310)
Q Consensus       247 dgV~VG  252 (310)
                      .-+++.
T Consensus       278 ~~i~L~  283 (385)
T 3nvt_A          278 GKIILC  283 (385)
T ss_dssp             CCEEEE
T ss_pred             CeEEEE
Confidence            555553

>1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A

Probab=83.95  E-value=21  Score=32.45  Aligned_cols=47  Identities=13%  Similarity=0.170  Sum_probs=38.1

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEcccccc
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFK  257 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~  257 (310)
                      +++..+.+++..++||  ++.+.+.+++++.++++.| +|.|.+--.-+.
T Consensus       228 ~~~~~~~l~~~~~iPI--~~de~~~~~~~~~~~i~~~~~d~v~ik~~~~G  275 (359)
T 1mdl_A          228 DYEGHQRIQSKLNVPV--QMGENWLGPEEMFKALSIGACRLAMPDAMKIG  275 (359)
T ss_dssp             CHHHHHHHHHTCSSCE--EECTTCCSHHHHHHHHHTTCCSEECCBTTTTT
T ss_pred             hHHHHHHHHHhCCCCE--EeCCCCCCHHHHHHHHHcCCCCEEeecchhhC
Confidence            5777788888778999  6689999999999999874 899988755444

>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A

Probab=83.91  E-value=5.1  Score=36.23  Aligned_cols=67  Identities=16%  Similarity=0.179  Sum_probs=40.4

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGad  116 (310)
                      +.++.+.+.|+++|..+.  .|.+     +..+...   +.++.+.+.+  ++||++...-..    .+.++.+.++|||
T Consensus        33 ~lv~~li~~Gv~gl~v~G--tTGE-----~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~Gad  105 (309)
T 3fkr_A           33 RAVDFMIDAGSDGLCILA--NFSE-----QFAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLGAA  105 (309)
T ss_dssp             HHHHHHHHTTCSCEEESS--GGGT-----GGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHcCCCEEEECc--cccC-----cccCCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcCCC
Confidence            678889999999985441  0100     1112222   2344444443  589998754332    2456677889999


Q ss_pred             eee
Q 037779          117 YVD  119 (310)
Q Consensus       117 ~v~  119 (310)
                      +++
T Consensus       106 avl  108 (309)
T 3fkr_A          106 MVM  108 (309)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            998

>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}

Probab=83.91  E-value=6.9  Score=34.46  Aligned_cols=129  Identities=15%  Similarity=0.170  Sum_probs=65.3

Q ss_pred             ccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCC---hHHHHHHHhh---cCcceEeeccc
Q 037779           28 VGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSD---PQLIKQIKSS---VTIPVMAKARI  101 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~---~~~i~~i~~~---~~lPv~~kd~i  101 (310)
                      .|+..=+.-| ..... .+.++.+.++|+.+| .++    |.....|....+.   .+.|+.+++.   .++|+.++.+.
T Consensus        81 ~pviaD~~~G-yg~~~-~~~~~~l~~aGa~gv-~iE----d~~~~~~k~l~~~~e~~~~I~a~~~a~~~~g~~~~v~aRt  153 (255)
T 2qiw_A           81 IPVSVDVESG-YGLSP-ADLIAQILEAGAVGI-NVE----DVVHSEGKRVREAQEHADYIAAARQAADVAGVDVVINGRT  153 (255)
T ss_dssp             SCEEEECTTC-TTCCH-HHHHHHHHHTTCCEE-EEC----SEEGGGTTEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred             CCEEeccCCC-cCcHH-HHHHHHHHHcCCcEE-EEC----CCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCeEEEEEe
Confidence            3455555555 22222 788999999999998 453    2211111111111   2344444443   25785554433


Q ss_pred             cc---------------hHHHHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeec-CCH----HHHHHHHHhCCC
Q 037779          102 GH---------------FVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGC-RNL----GESLRRIREGAA  161 (310)
Q Consensus       102 ~~---------------~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v-~t~----~ea~~a~~~Gad  161 (310)
                      +.               .+.++.+.++|||.|..... +..+..+.+.+. ..+++.+-+ ...    -......++|..
T Consensus       154 d~~~~g~~~~~~~~~~ai~ra~a~~eAGAd~i~~e~~-~~~~~~~~i~~~-~~~P~n~~~~~~~~~p~~~~~eL~~lGv~  231 (255)
T 2qiw_A          154 DAVKLGADVFEDPMVEAIKRIKLMEQAGARSVYPVGL-STAEQVERLVDA-VSVPVNITAHPVDGHGAGDLATLAGLGVR  231 (255)
T ss_dssp             CHHHHCTTTSSSHHHHHHHHHHHHHHHTCSEEEECCC-CSHHHHHHHHTT-CSSCBEEECBTTTBBTTBCHHHHHHTTCC
T ss_pred             chhhccCCcchHHHHHHHHHHHHHHHcCCcEEEEcCC-CCHHHHHHHHHh-CCCCEEEEecCCCCCCCCCHHHHHHcCCC
Confidence            21               13567788899999985443 323444445441 223322211 110    123445567888


Q ss_pred             EEEE
Q 037779          162 MIRT  165 (310)
Q Consensus       162 ~I~v  165 (310)
                      .|..
T Consensus       232 ~v~~  235 (255)
T 2qiw_A          232 RVTF  235 (255)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            7765

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=83.91  E-value=3.9  Score=35.90  Aligned_cols=88  Identities=11%  Similarity=0.002  Sum_probs=56.4

Q ss_pred             ccccchHHHHHHHHcCCCeeeec--CC------CChhHHHHHHHhcCCCCcEEee--cCCHH-HHHHHHHhCCCEEEEec
Q 037779           99 ARIGHFVEAQILEAIGVDYVDES--EV------LTPADEENHINKHNFRVPFVCG--CRNLG-ESLRRIREGAAMIRTKG  167 (310)
Q Consensus        99 d~i~~~~~~~~~~~aGad~v~~~--~~------~~~~~~~~~~~~~~~~l~v~~~--v~t~~-ea~~a~~~Gad~I~v~g  167 (310)
                      |+..-.+.++.+.++|+|.++..  +.      ---..+++.+++..+.+++-+.  +.+++ -++.+.++|||++.++.
T Consensus        38 D~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~  117 (246)
T 3inp_A           38 DLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHP  117 (246)
T ss_dssp             CGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTCSEEEECG
T ss_pred             ChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEcc
Confidence            44433367788888999998731  11      1123667777775445554443  44554 45567789999999986


Q ss_pred             CCCCCchHHHHHHHHHhhcc
Q 037779          168 EAGTGNIVEAVRHVRSVMGD  187 (310)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~  187 (310)
                      +.. .++.++++++++.+..
T Consensus       118 Ea~-~~~~~~i~~ir~~G~k  136 (246)
T 3inp_A          118 EAS-EHIDRSLQLIKSFGIQ  136 (246)
T ss_dssp             GGC-SCHHHHHHHHHTTTSE
T ss_pred             ccc-hhHHHHHHHHHHcCCe
Confidence            544 3566777777776654

>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}

Probab=83.86  E-value=5.4  Score=36.23  Aligned_cols=63  Identities=13%  Similarity=0.134  Sum_probs=34.8

Q ss_pred             HHHHHHHhc--CCCCEEEEccCCCCCHHHH---HHHHHcCCCEEEEccccccC--CCHHHHHHHHHHHHHc
Q 037779          211 DLVMQTKQL--GRLPVVHFAAGGVATPADA---AMMMQLGCDGVFVGSGVFKS--GDPVRRARAIVQAVTN  274 (310)
Q Consensus       211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di---~~~~~~GadgV~VGsai~~~--~dp~~~~~~~~~~~~~  274 (310)
                      ++++.+.+.  .++||++ -.|+.++.+.+   +.+.++|||++++..-.|..  .+.....+-|....++
T Consensus        68 ~v~~~~~~~~~grvpvia-Gvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~kp~~~~~l~~~f~~ia~a  137 (318)
T 3qfe_A           68 QLIATARKAVGPDFPIMA-GVGAHSTRQVLEHINDASVAGANYVLVLPPAYFGKATTPPVIKSFFDDVSCQ  137 (318)
T ss_dssp             HHHHHHHHHHCTTSCEEE-ECCCSSHHHHHHHHHHHHHHTCSEEEECCCCC---CCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCcEEE-eCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCCHHHHHHHHHHHHhh
Confidence            344444442  4789963 44555444333   34446799999999996543  3555544444444443

>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}

Probab=83.81  E-value=8.3  Score=34.02  Aligned_cols=107  Identities=11%  Similarity=0.207  Sum_probs=66.3

Q ss_pred             HHHHHHHHcCCCeeeecCC--C-Ch-------hHHHHHHHh--cCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCC
Q 037779          105 VEAQILEAIGVDYVDESEV--L-TP-------ADEENHINK--HNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTG  172 (310)
Q Consensus       105 ~~~~~~~~aGad~v~~~~~--~-~~-------~~~~~~~~~--~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~  172 (310)
                      +.++.+.++|++.|-....  . ++       .+-.+.+.+  ...|++++.++++...+..+.+. +|++.+...    
T Consensus        41 ~~a~~l~~~Ga~~vk~~~fkprts~~~~~g~~~egl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~-vd~~kIga~----  115 (262)
T 1zco_A           41 KVAEFLAEVGIKVLRGGAFKPRTSPYSFQGYGEKALRWMREAADEYGLVTVTEVMDTRHVELVAKY-SDILQIGAR----  115 (262)
T ss_dssp             HHHHHHHHTTCCEEECBSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECCCGGGHHHHHHH-CSEEEECGG----
T ss_pred             HHHHHHHHcCCCEEEEEecccCCCcccccCccHHHHHHHHHHHHHcCCcEEEeeCCHHhHHHHHhh-CCEEEECcc----
Confidence            3455666688887752111  0 11       222233332  33679999999999998888888 999998622    


Q ss_pred             chHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCC-CHHHHHHHHH----cCC-
Q 037779          173 NIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVA-TPADAAMMMQ----LGC-  246 (310)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~-t~~di~~~~~----~Ga-  246 (310)
                      +                                 .....+++.+.+ .+.||+  ..=|.. |++++..+.+    .|. 
T Consensus       116 ~---------------------------------~~n~~ll~~~a~-~~kPV~--lk~G~~~t~~e~~~Av~~i~~~Gn~  159 (262)
T 1zco_A          116 N---------------------------------SQNFELLKEVGK-VENPVL--LKRGMGNTIQELLYSAEYIMAQGNE  159 (262)
T ss_dssp             G---------------------------------TTCHHHHHHHTT-SSSCEE--EECCTTCCHHHHHHHHHHHHTTTCC
T ss_pred             c---------------------------------ccCHHHHHHHHh-cCCcEE--EecCCCCCHHHHHHHHHHHHHCCCC
Confidence            0                                 123556777766 578995  356665 8988776653    465 


Q ss_pred             CEEEEc
Q 037779          247 DGVFVG  252 (310)
Q Consensus       247 dgV~VG  252 (310)
                      +.+++=
T Consensus       160 ~i~L~~  165 (262)
T 1zco_A          160 NVILCE  165 (262)
T ss_dssp             CEEEEE
T ss_pred             eEEEEE
Confidence            444443

>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0

Probab=83.76  E-value=2.8  Score=38.03  Aligned_cols=61  Identities=20%  Similarity=0.151  Sum_probs=37.7

Q ss_pred             HHHHHHHhc--CCCCEEEEccCCCCCHHHHH----HHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          211 DLVMQTKQL--GRLPVVHFAAGGVATPADAA----MMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di~----~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      ++++.+.+.  .++||+  +.-|= +.++..    .+.++|||++++....+..++.....+-|....++
T Consensus        69 ~v~~~~v~~~~grvpVi--aGvg~-~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a  135 (316)
T 3e96_A           69 EEVRRTVEYVHGRALVV--AGIGY-ATSTAIELGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIEA  135 (316)
T ss_dssp             HHHHHHHHHHTTSSEEE--EEECS-SHHHHHHHHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCcEE--EEeCc-CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHh
Confidence            344444442  478985  34342 444433    34467999999999998877776665555555444

>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1

Probab=83.68  E-value=3.5  Score=40.02  Aligned_cols=31  Identities=13%  Similarity=0.093  Sum_probs=26.7

Q ss_pred             EEccCCCCCHHHHHHHHHcCC--CEEEEcccccc
Q 037779          226 HFAAGGVATPADAAMMMQLGC--DGVFVGSGVFK  257 (310)
Q Consensus       226 ~ia~GGI~t~~di~~~~~~Ga--dgV~VGsai~~  257 (310)
                      ++++||| +.+.+.++.+.|+  +++.||+.|+.
T Consensus       289 I~aSggl-d~~~i~~l~~~G~~~~sfGvGT~Lt~  321 (494)
T 2f7f_A          289 IYASNDL-DENTILNLKMQKSKIDVWGVGTKLIT  321 (494)
T ss_dssp             EEECSSC-CHHHHHHHHHTTCCCCEEEECHHHHT
T ss_pred             EEEECCC-CHHHHHHHHHcCCCEEEEecCccccc
Confidence            3789999 6999999999996  77778888887

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*

Probab=83.65  E-value=1.4  Score=41.07  Aligned_cols=139  Identities=14%  Similarity=0.191  Sum_probs=78.8

Q ss_pred             cCcceEeecccc-ch-------HHHHHHHHcCCCeeeecC--CC-ChhH--HHHHHHhcCCCCcEEee--c------CCH
Q 037779           91 VTIPVMAKARIG-HF-------VEAQILEAIGVDYVDESE--VL-TPAD--EENHINKHNFRVPFVCG--C------RNL  149 (310)
Q Consensus        91 ~~lPv~~kd~i~-~~-------~~~~~~~~aGad~v~~~~--~~-~~~~--~~~~~~~~~~~l~v~~~--v------~t~  149 (310)
                      ...|+++...-+ +.       ..++.+.+.|+-....+-  .+ .|..  -.+.+++..++.+++.+  +      .+.
T Consensus        58 l~~Pv~ia~MtGgt~~~~~in~~la~~a~~~G~~~~vGs~~~~l~~~~~~~s~~~vr~~ap~~~~~anlg~~ql~~~~~~  137 (368)
T 3vkj_A           58 ISVPVMVTGMTGGRNELGRINKIIAEVAEKFGIPMGVGSQRVAIEKAEARESFAIVRKVAPTIPIIANLGMPQLVKGYGL  137 (368)
T ss_dssp             ESSSEEECCCCCSSHHHHHHHHHHHHHHHHHTCCEECCCCHHHHHCGGGSHHHHHHHHHCSSSCEEEEEEGGGGGTTCCH
T ss_pred             ccCCeEEecCCCCCchhhHHHHHHHHHHHHhCCCeeeecchhccCCHHHHhhHHHHHHhCcCcceecCcCeeecCCCCCH
Confidence            467988875543 21       236778889999886321  11 1221  11223333455555442  3      456


Q ss_pred             HHHHHHHH-hCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCC-CcHHHHHHHHhcCCCCEEEE
Q 037779          150 GESLRRIR-EGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIA-APYDLVMQTKQLGRLPVVHF  227 (310)
Q Consensus       150 ~ea~~a~~-~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~-~~~~l~~~i~~~~~iPVv~i  227 (310)
                      +++.++.+ .+++.+.++-.    ...+.+            .+.-+        +++. ...+.++.+++..++||++=
T Consensus       138 ~~~~~av~~~~a~al~Ihln----~~~~~~------------~p~g~--------~~~~~~~~~~i~~i~~~~~vPVivK  193 (368)
T 3vkj_A          138 KEFQDAIQMIEADAIAVHLN----PAQEVF------------QPEGE--------PEYQIYALEKLRDISKELSVPIIVK  193 (368)
T ss_dssp             HHHHHHHHHTTCSEEEEECC----HHHHHH------------SSSCC--------CBCBTHHHHHHHHHHTTCSSCEEEE
T ss_pred             HHHHHHHHHhcCCCeEEEec----chhhhh------------CCCCC--------chhhHHHHHHHHHHHHHcCCCEEEE
Confidence            77777664 57777776511    000000            00000        1111 13667788888778999521


Q ss_pred             -ccCCCCCHHHHHHHHHcCCCEEEEccc
Q 037779          228 -AAGGVATPADAAMMMQLGCDGVFVGSG  254 (310)
Q Consensus       228 -a~GGI~t~~di~~~~~~GadgV~VGsa  254 (310)
                       ..+|+ ++++++.+.++|+|+|.|+..
T Consensus       194 ~vG~g~-s~~~A~~l~~aGad~I~V~g~  220 (368)
T 3vkj_A          194 ESGNGI-SMETAKLLYSYGIKNFDTSGQ  220 (368)
T ss_dssp             CSSSCC-CHHHHHHHHHTTCCEEECCCB
T ss_pred             eCCCCC-CHHHHHHHHhCCCCEEEEeCC
Confidence             25666 799999999999999999543

>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A

Probab=83.64  E-value=13  Score=33.36  Aligned_cols=141  Identities=16%  Similarity=0.221  Sum_probs=78.1

Q ss_pred             ChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeecC-CCChhHHHHHHHhcCCCCcEEeec---CCHHHHHHH
Q 037779           80 DPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESE-VLTPADEENHINKHNFRVPFVCGC---RNLGESLRR  155 (310)
Q Consensus        80 ~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~-~~~~~~~~~~~~~~~~~l~v~~~v---~t~~ea~~a  155 (310)
                      -+..++++++..++|++--.+  +...++.+.+. +|.+-+.+ .....++.+.+.+  .+.++++..   .|++|.+.+
T Consensus        76 GL~~L~~~~~e~Glp~~tev~--d~~~v~~l~~~-vd~lkIgA~~~~n~~LLr~~a~--~gkPVilK~G~~~t~~e~~~a  150 (288)
T 3tml_A           76 GLRILSEVKRQLGLPVLTDVH--SIDEIEQVASV-VDVLQTPAFLCRQTDFIHACAR--SGKPVNIKKGQFLAPHDMKNV  150 (288)
T ss_dssp             HHHHHHHHHHHHCCCEEEECC--SGGGHHHHHHH-CSEEEECGGGTTCHHHHHHHHT--SSSCEEEECCTTCCTTHHHHH
T ss_pred             HHHHHHHHHHhcCCeEEEEeC--CHHHHHHHHHh-CCEEEECcccccCHHHHHHHHc--cCCcEEEeCCCCCCHHHHHHH
Confidence            355677888888999975433  22455666667 88887442 2334455555543  567777763   266665544


Q ss_pred             H----HhCC-------CEEEEe-cCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCC
Q 037779          156 I----REGA-------AMIRTK-GEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLP  223 (310)
Q Consensus       156 ~----~~Ga-------d~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iP  223 (310)
                      +    +.|.       +++-.+ |..|+.+                               +...+...+..+++ .++|
T Consensus       151 ve~i~~~Gn~~~~~~~~i~L~erg~~y~~~-------------------------------~~~vdl~~i~~lk~-~~~p  198 (288)
T 3tml_A          151 IDKARDAAREAGLSEDRFMACERGVSFGYN-------------------------------NLVSDMRSLAIMRE-TNAP  198 (288)
T ss_dssp             HHHHHHHHHTTTCCSCCEEEEECCEECSSS-------------------------------CEECCHHHHHHGGG-GSSC
T ss_pred             HHHHHHcCCCccCCCCcEEEEeCCCCCCCC-------------------------------cCcCCHHHHHHHHh-cCCc
Confidence            3    3343       344443 2222110                               11124555666776 6789


Q ss_pred             EEEEc-------------cCCCCC--HHHHHHHHHcCCCEEEEcccccc
Q 037779          224 VVHFA-------------AGGVAT--PADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       224 Vv~ia-------------~GGI~t--~~di~~~~~~GadgV~VGsai~~  257 (310)
                      |+.-+             ++|-..  +.-...+..+||||+++=.-+.-
T Consensus       199 V~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GadGl~iE~H~~p  247 (288)
T 3tml_A          199 VVFDATHSVQLPGGQGTSSGGQREFVPVLARAAVATGVAGLFMETHPNP  247 (288)
T ss_dssp             EEEEHHHHTCCCC--------CTTHHHHHHHHHHHHCCSEEEEEEESSG
T ss_pred             EEEcCCcccccCCcccCCCCCchhhHHHHHHHHHHcCCCEEEEeeccCh
Confidence            94211             134221  22345677889999999876653

>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*

Probab=83.44  E-value=26  Score=31.84  Aligned_cols=63  Identities=10%  Similarity=0.132  Sum_probs=36.8

Q ss_pred             HHHH-HHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhh------c-CcceEeeccccchHHHHHHHHcCCCe
Q 037779           46 EQAR-IAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSS------V-TIPVMAKARIGHFVEAQILEAIGVDY  117 (310)
Q Consensus        46 ~~a~-~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~------~-~lPv~~kd~i~~~~~~~~~~~aGad~  117 (310)
                      ++++ .+.++|++.|- .       -.+. + .....+.++++++.      . +..+..-.+  ....++.+.++|++.
T Consensus        45 ~i~~~~L~~~Gv~~IE-~-------g~~~-~-~~~~~~~v~~~~~~~~~~~~~~~~~i~~l~~--~~~~i~~a~~~g~~~  112 (337)
T 3ble_A           45 NIAKFLLQKLNVDRVE-I-------ASAR-V-SKGELETVQKIMEWAATEQLTERIEILGFVD--GNKTVDWIKDSGAKV  112 (337)
T ss_dssp             HHHHHHHHTTCCSEEE-E-------EETT-S-CTTHHHHHHHHHHHHHHTTCGGGEEEEEESS--TTHHHHHHHHHTCCE
T ss_pred             HHHHHHHHHcCCCEEE-E-------eCCC-C-ChhHHHHHHHHHhhhhhhccCCCCeEEEEcc--chhhHHHHHHCCCCE
Confidence            6799 99999999872 2       1111 0 01124677777762      2 223332211  123678888999999


Q ss_pred             eee
Q 037779          118 VDE  120 (310)
Q Consensus       118 v~~  120 (310)
                      |.+
T Consensus       113 v~i  115 (337)
T 3ble_A          113 LNL  115 (337)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            873

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=83.40  E-value=1.9  Score=36.21  Aligned_cols=74  Identities=31%  Similarity=0.293  Sum_probs=48.5

Q ss_pred             CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee
Q 037779           42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      +.+++.++.+.+.|++.+..-...|+..+  .| .....++.++++++..++|+++-..+. .+.+..+.++|++.+.
T Consensus       115 ~~t~~e~~~~~~~g~d~i~~~~~~~~~~~--~~-~~~~~~~~l~~l~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~  188 (215)
T 1xi3_A          115 VYSLEEALEAEKKGADYLGAGSVFPTKTK--ED-ARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREVLKTGVDGIA  188 (215)
T ss_dssp             ESSHHHHHHHHHHTCSEEEEECSSCC------C-CCCCHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHHTTTCSEEE
T ss_pred             cCCHHHHHHHHhcCCCEEEEcCCccCCCC--CC-CCCcCHHHHHHHHHhCCCCEEEECCcC-HHHHHHHHHcCCCEEE
Confidence            45666677788899999832111222111  11 112347788888888899999988776 4566667789999987

>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}

Probab=83.37  E-value=8.1  Score=31.31  Aligned_cols=39  Identities=31%  Similarity=0.561  Sum_probs=25.4

Q ss_pred             HHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEE
Q 037779          210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFV  251 (310)
Q Consensus       210 ~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~V  251 (310)
                      .++++.+++..  ++||++   ||.-..++...+.+.|+|++..
T Consensus        87 ~~~i~~L~~~g~~~i~v~v---GG~~~~~~~~~l~~~G~d~v~~  127 (161)
T 2yxb_A           87 KRLMAKLRELGADDIPVVL---GGTIPIPDLEPLRSLGIREIFL  127 (161)
T ss_dssp             HHHHHHHHHTTCTTSCEEE---EECCCHHHHHHHHHTTCCEEEC
T ss_pred             HHHHHHHHhcCCCCCEEEE---eCCCchhcHHHHHHCCCcEEEC
Confidence            34555565542  578852   5554567777778899998663

>2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A

Probab=83.05  E-value=20  Score=32.88  Aligned_cols=47  Identities=6%  Similarity=-0.167  Sum_probs=37.1

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEcccccc
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFK  257 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~  257 (310)
                      +++..+.+++..++||  ++.+.+.+++++.++++.| +|.|.+--.-+.
T Consensus       230 d~~~~~~l~~~~~iPI--~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~G  277 (371)
T 2ovl_A          230 DLVGNARIVRESGHTI--AGGENLHTLYDFHNAVRAGSLTLPEPDVSNIG  277 (371)
T ss_dssp             CHHHHHHHHHHHCSCE--EECTTCCSHHHHHHHHHHTCCSEECCCTTTTT
T ss_pred             cHHHHHHHHhhCCCCE--EeCCCCCCHHHHHHHHHcCCCCEEeeCccccC
Confidence            5677777777667999  5689999999999999864 899888765544

>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*

Probab=82.68  E-value=14  Score=32.73  Aligned_cols=83  Identities=13%  Similarity=0.107  Sum_probs=47.5

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHH-------HHHHhhcCcceEeeccccchHHHHHHHHcCCCee
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLI-------KQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYV  118 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i-------~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v  118 (310)
                      +.++.+.+.||+.| ++....|-+    |+...+..+.+       +.+++ .++|+++..+-  .+-++.+.++||+.|
T Consensus        34 ~~a~~m~~~GAdiI-DIGgeSTRP----ga~~vs~eeE~~Rv~pvi~~l~~-~~v~iSIDT~~--~~Va~~al~aGa~iI  105 (270)
T 4hb7_A           34 NRVKAMIDEGADII-DVGGVSTRP----GHEMVTLEEELNRVLPVVEAIVG-FDVKISVDTFR--SEVAEACLKLGVDMI  105 (270)
T ss_dssp             HHHHHHHHTTCSEE-EEESCCCST----TCCCCCHHHHHHHHHHHHHHHTT-SSSEEEEECSC--HHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHCCCCEE-EECCccCCC----CCCCCchHHHHHHHHHHHHHhhc-CCCeEEEECCC--HHHHHHHHHhcccee
Confidence            66999999999988 663111111    22112222222       33332 46788776553  356788889999998


Q ss_pred             e-ecCCCChhHHHHHHHhc
Q 037779          119 D-ESEVLTPADEENHINKH  136 (310)
Q Consensus       119 ~-~~~~~~~~~~~~~~~~~  136 (310)
                      - ++.....++..+.+.++
T Consensus       106 NDVs~g~~d~~m~~~va~~  124 (270)
T 4hb7_A          106 NDQWAGLYDHRMFQIVAKY  124 (270)
T ss_dssp             EETTTTSSCTHHHHHHHHT
T ss_pred             ccccccccchhHHHHHHHc
Confidence            6 44333334555555543

>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1

Probab=82.50  E-value=24  Score=31.35  Aligned_cols=29  Identities=14%  Similarity=0.242  Sum_probs=25.3

Q ss_pred             CCcEEeecCCHHHHHHHHHhCCCEE-EEec
Q 037779          139 RVPFVCGCRNLGESLRRIREGAAMI-RTKG  167 (310)
Q Consensus       139 ~l~v~~~v~t~~ea~~a~~~Gad~I-~v~g  167 (310)
                      ++++.+++.+++.++.+++.|+++| -++|
T Consensus        80 ~~piSIDT~~~~va~aAl~aGa~iINdvsg  109 (280)
T 1eye_A           80 GITVSIDTMRADVARAALQNGAQMVNDVSG  109 (280)
T ss_dssp             TCCEEEECSCHHHHHHHHHTTCCEEEETTT
T ss_pred             CCEEEEeCCCHHHHHHHHHcCCCEEEECCC
Confidence            7899999999999999999999988 4544

>2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti}

Probab=82.46  E-value=15  Score=34.06  Aligned_cols=45  Identities=9%  Similarity=-0.018  Sum_probs=35.2

Q ss_pred             cHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccc
Q 037779          209 PYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVF  256 (310)
Q Consensus       209 ~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~  256 (310)
                      +++..+.+++.. ++||  ++.+.+ +++++.++++.| +|.|.+...|.
T Consensus       231 ~~~~~~~l~~~~~~iPI--a~dE~~-~~~~~~~~i~~~~~d~v~ikGGit  277 (389)
T 2oz8_A          231 DHDGLRTLRHAVTWTQI--NSGEYL-DLQGKRLLLEAHAADILNVHGQVT  277 (389)
T ss_dssp             CHHHHHHHHHHCCSSEE--EECTTC-CHHHHHHHHHTTCCSEEEECSCHH
T ss_pred             CHHHHHHHHhhCCCCCE--EeCCCC-CHHHHHHHHHcCCCCEEEECcCHH
Confidence            566777777766 7898  567888 999999999875 89999973343

>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}

Probab=82.44  E-value=12  Score=33.69  Aligned_cols=141  Identities=13%  Similarity=0.121  Sum_probs=77.6

Q ss_pred             ChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeecC-CCChhHHHHHHHhcCCCCcEEeec---CCHHHHHHH
Q 037779           80 DPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESE-VLTPADEENHINKHNFRVPFVCGC---RNLGESLRR  155 (310)
Q Consensus        80 ~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~-~~~~~~~~~~~~~~~~~l~v~~~v---~t~~ea~~a  155 (310)
                      -+..++++++..++|++--.+  +...++.+.+. +|.+-+.+ .....++.+.+.+  .+.++++..   .|++|.+.+
T Consensus       100 GL~~L~~~~~e~GLpv~Tev~--D~~~v~~l~~~-vd~lkIgA~~~~n~~LLr~va~--~gkPVilK~Gms~t~~ei~~a  174 (298)
T 3fs2_A          100 ALEVFSDLKKEYGFPVLTDIH--TEEQCAAVAPV-VDVLQIPAFLCRQTDLLIAAAR--TGRVVNVKKGQFLAPWDMKNV  174 (298)
T ss_dssp             HHHHHHHHHHHHCCCEEEECC--SHHHHHHHTTT-CSEEEECGGGTTCHHHHHHHHH--TTSEEEEECCTTCCGGGHHHH
T ss_pred             HHHHHHHHHHhcCCeEEEEeC--CHHHHHHHHhh-CCEEEECccccCCHHHHHHHHc--cCCcEEEeCCCCCCHHHHHHH
Confidence            356677888888999975433  33455666666 88876442 2334456665654  467777764   266665544


Q ss_pred             H----HhCCC-EEEEe-cCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEc-
Q 037779          156 I----REGAA-MIRTK-GEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFA-  228 (310)
Q Consensus       156 ~----~~Gad-~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia-  228 (310)
                      +    +.|.+ ++-.+ |..|+.+                               +...+...+..+++ .++||+.-+ 
T Consensus       175 ve~i~~~Gn~~iiL~erg~~y~~~-------------------------------~~~vdl~~i~~lk~-~~~PV~~D~s  222 (298)
T 3fs2_A          175 LAKITESGNPNVLATERGVSFGYN-------------------------------TLVSDMRALPIMAG-LGAPVIFDAT  222 (298)
T ss_dssp             HHHHHTTTCCCEEEEECCEECSSS-------------------------------CEECCTTHHHHHHT-TTSCEEEEHH
T ss_pred             HHHHHHcCCCeEEEEECCCCCCCC-------------------------------CCccCHHHHHHHHH-cCCcEEEcCC
Confidence            4    34654 44333 2222111                               00113334556666 578995311 


Q ss_pred             ------------cCCCCC--HHHHHHHHHcCCCEEEEcccccc
Q 037779          229 ------------AGGVAT--PADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       229 ------------~GGI~t--~~di~~~~~~GadgV~VGsai~~  257 (310)
                                  ++|...  +.-...+..+||||+++=.-+.-
T Consensus       223 Hsvq~p~~~~~~s~G~r~~v~~~a~AAvAlGAdGl~IE~H~tp  265 (298)
T 3fs2_A          223 HSVQQPGGQGGSTGGQREFVETLARAAVAVGVAGFFIETHEDP  265 (298)
T ss_dssp             HHTCCCC--------CGGGHHHHHHHHHHHCCSEEEEEEESSG
T ss_pred             CccccCCcccCCCCCchhhHHHHHHHHHHcCCCEEEEEecCCh
Confidence                        134211  22345667889999999776653

>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*

Probab=82.44  E-value=23  Score=30.42  Aligned_cols=170  Identities=8%  Similarity=0.028  Sum_probs=85.9

Q ss_pred             hHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeecCC-CChhHHHHHHHh--cCCCCcEEeecCCHHHH---HH
Q 037779           81 PQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEV-LTPADEENHINK--HNFRVPFVCGCRNLGES---LR  154 (310)
Q Consensus        81 ~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~-~~~~~~~~~~~~--~~~~l~v~~~v~t~~ea---~~  154 (310)
                      .+.++.+++. ++||++-......+....+.++||+..+.-.. .........+..  ....+.+++-=.+....   ..
T Consensus        64 ~~~~~~lr~~-~~pvi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~~~~~~~~~~~~~~~~~~~~ILivDD~~~~~~~l~~  142 (259)
T 3luf_A           64 GEAVKVLLER-GLPVVILTADISEDKREAWLEAGVLDYVMKDSRHSLQYAVGLVHRLYLNQQIEVLVVDDSRTSRHRTMA  142 (259)
T ss_dssp             SHHHHHHHHT-TCCEEEEECC-CHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             HHHHHHHHhC-CCCEEEEEccCCHHHHHHHHHCCCcEEEeCCchhHHHHHHHhhhhHhhcCCCcEEEEeCCHHHHHHHHH
Confidence            5678888764 68988765544445566778899988653221 011112222211  01123333322232211   12


Q ss_pred             HH-HhCCCEEEEecCCCCCchHHHHHHHHHhh-cceecccccCchhHHhhhccCCCcHHHHHHHHhc---CCCCEEEEcc
Q 037779          155 RI-REGAAMIRTKGEAGTGNIVEAVRHVRSVM-GDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL---GRLPVVHFAA  229 (310)
Q Consensus       155 a~-~~Gad~I~v~g~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~---~~iPVv~ia~  229 (310)
                      .. ..|..+....      +..++++..++.. .|+..+...-+         -...+++++.+++.   ..+||+++  
T Consensus       143 ~L~~~~~~v~~a~------~~~eal~~l~~~~~~dlvllD~~mP---------~~dG~~l~~~lr~~~~~~~~~ii~~--  205 (259)
T 3luf_A          143 QLRKQLLQVHEAS------HAREALATLEQHPAIRLVLVDYYMP---------EIDGISLVRMLRERYSKQQLAIIGI--  205 (259)
T ss_dssp             HHHTTTCEEEEES------SHHHHHHHHHHCTTEEEEEECSCCS---------SSCHHHHHHHHHHHCCTTTSEEEEE--
T ss_pred             HHHHcCcEEEEeC------CHHHHHHHHhcCCCCCEEEEcCCCC---------CCCHHHHHHHHHhccCCCCCeEEEE--
Confidence            22 2343332221      3345665554432 23221111000         02247788888764   25788644  


Q ss_pred             CCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779          230 GGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       230 GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                      .+-.+.+...+++++||+++     |.++-++.+....+...++
T Consensus       206 s~~~~~~~~~~a~~~Ga~~y-----l~KP~~~~~L~~~i~~~l~  244 (259)
T 3luf_A          206 SVSDKRGLSARYLKQGANDF-----LNQPFEPEELQCRVSHNLE  244 (259)
T ss_dssp             ECSSSSSHHHHHHHTTCSEE-----EESSCCHHHHHHHHHHHHH
T ss_pred             EccCCHHHHHHHHhcChhhe-----EcCCCCHHHHHHHHHHHHH
Confidence            44456788889999999987     5566666665555555444

>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A

Probab=82.41  E-value=12  Score=30.97  Aligned_cols=85  Identities=19%  Similarity=0.262  Sum_probs=54.5

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-ec--
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-ES--  121 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~--  121 (310)
                      .+.++.+...|+..+. +    ++. ...|...-...+.+++++...++|++....+...+....+.+.|++.++ .+  
T Consensus       133 ~~~i~~~~~~~~~~vl-i----~~~-~~~g~~~g~~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~  206 (237)
T 3cwo_X          133 RDWVVEVEKRGAGEIL-L----TSI-DRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVF  206 (237)
T ss_dssp             HHHHHHHHHHTCSEEE-E----EET-TTTTCCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHH
T ss_pred             HHHHHHHhhcCCCeEE-E----Eec-CCCCccccccHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHH
Confidence            4778888888888652 2    222 1112211123778999998899999998777765666677779999986 32  


Q ss_pred             --CCCChhHHHHHHHh
Q 037779          122 --EVLTPADEENHINK  135 (310)
Q Consensus       122 --~~~~~~~~~~~~~~  135 (310)
                        ....+.++.+.+++
T Consensus       207 ~~~~~~~~~~~~~l~~  222 (237)
T 3cwo_X          207 HFREIDVRELKEYLKK  222 (237)
T ss_dssp             HTTSSCHHHHHHHHHT
T ss_pred             HcCCCCHHHHHHHHHH
Confidence              22344555555544

>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1

Probab=82.23  E-value=14  Score=27.76  Aligned_cols=59  Identities=17%  Similarity=0.224  Sum_probs=39.4

Q ss_pred             cHHHHHHHHhc---CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          209 PYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       209 ~~~l~~~i~~~---~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      ..++++.+++.   .++|++++  .+-.+.+...++++.|+++++.     ++-++....+.+...++.
T Consensus        77 g~~~~~~l~~~~~~~~~~ii~~--t~~~~~~~~~~~~~~g~~~~l~-----kP~~~~~l~~~i~~~~~~  138 (149)
T 1k66_A           77 GREVLQEIKQDEVLKKIPVVIM--TTSSNPKDIEICYSYSISSYIV-----KPLEIDRLTETVQTFIKY  138 (149)
T ss_dssp             HHHHHHHHTTSTTGGGSCEEEE--ESCCCHHHHHHHHHTTCSEEEE-----CCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcccCCCeEEEE--eCCCCHHHHHHHHHCCCCEEEe-----CCCCHHHHHHHHHHHHHH
Confidence            35677777664   46898755  4445688999999999999854     444555555555555543

>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}

Probab=81.68  E-value=13  Score=32.97  Aligned_cols=114  Identities=18%  Similarity=0.147  Sum_probs=59.9

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHH---HHHHHhh---cCcceEeeccccc---------------
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQL---IKQIKSS---VTIPVMAKARIGH---------------  103 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~---i~~i~~~---~~lPv~~kd~i~~---------------  103 (310)
                      .+.++.+.++|+.++ .++    |.....|..+.+-.+.   |+.+++.   .++|+.++.+...               
T Consensus        95 ~~~v~~l~~aGaagv-~iE----D~~~~~~k~l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~~~  169 (275)
T 2ze3_A           95 RRTVEHFAALGVAGV-NLE----DATGLTPTELYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEERLAE  169 (275)
T ss_dssp             HHHHHHHHHTTCSEE-EEE----CBCSSSSSCBCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHHHH
T ss_pred             HHHHHHHHHcCCcEE-EEC----CCcCCCCCccCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhhHHH
Confidence            367999999999998 453    2210011111222233   4444433   2578777544321               


Q ss_pred             -hHHHHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCC-HHHHHHHHHhCCCEEEE
Q 037779          104 -FVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRN-LGESLRRIREGAAMIRT  165 (310)
Q Consensus       104 -~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t-~~ea~~a~~~Gad~I~v  165 (310)
                       .+.++.+.++|||.|......+.+++.+..+..  .+++.+.+.+ .-......++|...+..
T Consensus       170 ai~Ra~ay~eAGAd~i~~e~~~~~~~~~~i~~~~--~~P~n~~~~~~~~~~~eL~~lGv~~v~~  231 (275)
T 2ze3_A          170 TVRRGQAYADAGADGIFVPLALQSQDIRALADAL--RVPLNVMAFPGSPVPRALLDAGAARVSF  231 (275)
T ss_dssp             HHHHHHHHHHTTCSEEECTTCCCHHHHHHHHHHC--SSCEEEECCTTSCCHHHHHHTTCSEEEC
T ss_pred             HHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHhc--CCCEEEecCCCCCCHHHHHHcCCcEEEE
Confidence             135567778999999754443344454444442  2443332211 11234556779888775

>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A

Probab=81.36  E-value=5.7  Score=35.84  Aligned_cols=63  Identities=16%  Similarity=0.188  Sum_probs=37.1

Q ss_pred             HHHHHHHhc--CCCCEEEEccCCCCCHHHH---HHHHHcCCCEEEEccccccC--CCHHHHHHHHHHHHHc
Q 037779          211 DLVMQTKQL--GRLPVVHFAAGGVATPADA---AMMMQLGCDGVFVGSGVFKS--GDPVRRARAIVQAVTN  274 (310)
Q Consensus       211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di---~~~~~~GadgV~VGsai~~~--~dp~~~~~~~~~~~~~  274 (310)
                      ++++.+.+.  .++||++ -.|+.++.+.+   +.+.++|||++++..-.|..  .+.....+-|....++
T Consensus        71 ~v~~~~~~~~~gr~pvia-Gvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~~~s~~~l~~~f~~ia~a  140 (307)
T 3s5o_A           71 EVVSRVRQAMPKNRLLLA-GSGCESTQATVEMTVSMAQVGADAAMVVTPCYYRGRMSSAALIHHYTKVADL  140 (307)
T ss_dssp             HHHHHHHHTSCTTSEEEE-ECCCSSHHHHHHHHHHHHHTTCSEEEEECCCTTGGGCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCcEEE-ecCCCCHHHHHHHHHHHHHcCCCEEEEcCCCcCCCCCCHHHHHHHHHHHHhh
Confidence            445555553  4789852 34445443333   34446899999999888763  4555555555544443

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=81.03  E-value=3.2  Score=43.78  Aligned_cols=89  Identities=24%  Similarity=0.248  Sum_probs=57.8

Q ss_pred             ccceeeecCCccccCCC-HHHHHHHHHcCCcEEEecccc------cc----------hhh-hcC---CCCC-CCChHHHH
Q 037779           28 VGLAQMLRGGVIMDVVT-PEQARIAEEAGACAVMALERV------PA----------DIR-AQG---GVAR-MSDPQLIK   85 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~~~-~~~a~~~~~~Ga~~I~~l~~~------~~----------d~r-~~~---G~~~-~~~~~~i~   85 (310)
                      .|+..+++.+    ..+ .++++.+.++|+++|+..|..      ..          ..+ ..+   |... ....+.++
T Consensus       704 ~Pv~vK~~~~----~~~~~~~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~~~~~~~~~~v~  779 (1025)
T 1gte_A          704 IPFFAKLTPN----VTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVT  779 (1025)
T ss_dssp             SCEEEEECSC----SSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHH
T ss_pred             CceEEEeCCC----hHHHHHHHHHHHHcCCCEEEEeccccccccccccccccccccccccccCCCCCcccchhHHHHHHH
Confidence            4556666542    234 578999999999999764410      00          000 111   1100 00035688


Q ss_pred             HHHhhc-CcceEeeccccchHHHHHHHHcCCCeeee
Q 037779           86 QIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDE  120 (310)
Q Consensus        86 ~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~  120 (310)
                      ++++.+ ++||+....|.+.+++..+.++|||.|.+
T Consensus       780 ~v~~~~~~ipvi~~GGI~s~~da~~~l~~Ga~~v~v  815 (1025)
T 1gte_A          780 TIARALPGFPILATGGIDSAESGLQFLHSGASVLQV  815 (1025)
T ss_dssp             HHHHHSTTCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHcCCCCEEEecCcCCHHHHHHHHHcCCCEEEE
Confidence            888888 89999999998878888788899999873

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=81.01  E-value=4.7  Score=34.82  Aligned_cols=88  Identities=15%  Similarity=-0.028  Sum_probs=55.4

Q ss_pred             ccccchHHHHHHHHcCCCeeee-----cCC--C-ChhHHHHHHHhc-CCCCcEEe--ecCCHH-HHHHHHHhCCCEEEEe
Q 037779           99 ARIGHFVEAQILEAIGVDYVDE-----SEV--L-TPADEENHINKH-NFRVPFVC--GCRNLG-ESLRRIREGAAMIRTK  166 (310)
Q Consensus        99 d~i~~~~~~~~~~~aGad~v~~-----~~~--~-~~~~~~~~~~~~-~~~l~v~~--~v~t~~-ea~~a~~~Gad~I~v~  166 (310)
                      |+..-.+.++.+.++|+|.++.     +..  + --..+++.++++ +..+++-+  -+.+++ .++.+.++|+|++.++
T Consensus        15 D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~G~~~v~~ir~~~~~~~~~dvhLmv~~p~~~i~~~~~aGad~itvH   94 (228)
T 3ovp_A           15 DLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQYTFH   94 (228)
T ss_dssp             CGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBCBCHHHHHHHHHHHCSSSCEEEEEECSCGGGGHHHHHHHTCSEEEEE
T ss_pred             CchhHHHHHHHHHHcCCCEEEEEecCCCcCcccccCHHHHHHHHHhhCCCCcEEEEEEeCCHHHHHHHHHHcCCCEEEEc
Confidence            4433235677888899998873     211  1 123566777665 24444443  245554 3556778999999999


Q ss_pred             cCCCCCchHHHHHHHHHhhcc
Q 037779          167 GEAGTGNIVEAVRHVRSVMGD  187 (310)
Q Consensus       167 g~~~~~~~~~~~~~~~~~~~~  187 (310)
                      .+... +..+.++++++.+..
T Consensus        95 ~Ea~~-~~~~~i~~i~~~G~k  114 (228)
T 3ovp_A           95 LEATE-NPGALIKDIRENGMK  114 (228)
T ss_dssp             GGGCS-CHHHHHHHHHHTTCE
T ss_pred             cCCch-hHHHHHHHHHHcCCC
Confidence            76443 567788888887665

>2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A

Probab=80.74  E-value=12  Score=34.65  Aligned_cols=45  Identities=11%  Similarity=-0.051  Sum_probs=37.2

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEcccc
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGV  255 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai  255 (310)
                      +++..+.+++..++||  ++.+.+.+++++.++++.| +|.|.+--.-
T Consensus       247 d~~~~~~l~~~~~iPI--~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~  292 (388)
T 2nql_A          247 DIAGLEKVSKNTDVPI--AVGEEWRTHWDMRARIERCRIAIVQPEMGH  292 (388)
T ss_dssp             CHHHHHHHHTSCCSCE--EECTTCCSHHHHHHHHTTSCCSEECCCHHH
T ss_pred             hHHHHHHHHhhCCCCE--EEeCCcCCHHHHHHHHHcCCCCEEEecCCC
Confidence            5778888888778999  5689999999999999875 8998885544

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=80.56  E-value=28  Score=30.44  Aligned_cols=109  Identities=15%  Similarity=0.090  Sum_probs=60.3

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEe-eccccchHHHHHHHHcCCCeee-ec-
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMA-KARIGHFVEAQILEAIGVDYVD-ES-  121 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~-kd~i~~~~~~~~~~~aGad~v~-~~-  121 (310)
                      .++++.+.++|++++... ..+.+.          ..+.++.+++ .++.++. -......+.++.+.+.+..++. .+ 
T Consensus       112 ~~~~~~~~~aGadgii~~-d~~~e~----------~~~~~~~~~~-~g~~~i~l~~p~t~~~~i~~i~~~~~g~v~~~s~  179 (268)
T 1qop_A          112 DAFYARCEQVGVDSVLVA-DVPVEE----------SAPFRQAALR-HNIAPIFICPPNADDDLLRQVASYGRGYTYLLSR  179 (268)
T ss_dssp             HHHHHHHHHHTCCEEEET-TCCGGG----------CHHHHHHHHH-TTCEEECEECTTCCHHHHHHHHHHCCSCEEEESS
T ss_pred             HHHHHHHHHcCCCEEEEc-CCCHHH----------HHHHHHHHHH-cCCcEEEEECCCCCHHHHHHHHhhCCCcEEEEec
Confidence            478999999999998433 111110          1334444443 3443211 1111122444455554444443 11 


Q ss_pred             C-------C--CChhHHHHHHHhcCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779          122 E-------V--LTPADEENHINKHNFRVPFVC--GCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       122 ~-------~--~~~~~~~~~~~~~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                      .       .  .+..+.++.+++.. ++++.+  +++|++.+.++...|||.+.+.
T Consensus       180 ~G~tG~~~~~~~~~~~~i~~lr~~~-~~pi~vggGI~t~e~~~~~~~agAD~vVVG  234 (268)
T 1qop_A          180 SGVTGAENRGALPLHHLIEKLKEYH-AAPALQGFGISSPEQVSAAVRAGAAGAISG  234 (268)
T ss_dssp             SSCCCSSSCC--CCHHHHHHHHHTT-CCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred             CCcCCCccCCCchHHHHHHHHHhcc-CCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence            1       1  11246667776632 455555  5899999999999999999885

>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A

Probab=80.49  E-value=25  Score=31.41  Aligned_cols=94  Identities=9%  Similarity=0.017  Sum_probs=60.0

Q ss_pred             CCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHh
Q 037779          139 RVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQ  218 (310)
Q Consensus       139 ~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~  218 (310)
                      +..++.++.|.--++.+.+.|.+.+.+.+...+        +.  ++.  .+...++-+.          -....+.+.+
T Consensus        15 ~~i~~~~a~D~~sA~~~~~aG~~ai~vs~~~~a--------~~--~G~--pD~~~vt~~e----------m~~~~~~I~~   72 (290)
T 2hjp_A           15 RLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELS--------AS--YAV--PDANILSMST----------HLEMMRAIAS   72 (290)
T ss_dssp             CCEEEEECSSHHHHHHHHHHTCSEEEECHHHHH--------HH--TTS--CTTTCSCHHH----------HHHHHHHHHT
T ss_pred             CcEEEecCCCHHHHHHHHHcCCCEEEEChHHHH--------Hh--CCC--CCCCCCCHHH----------HHHHHHHHHh
Confidence            467888999999999999999999988642100        00  000  0100111111          1334455555


Q ss_pred             cCCCCEEEEccCCCCCHHHH----HHHHHcCCCEEEEccc
Q 037779          219 LGRLPVVHFAAGGVATPADA----AMMMQLGCDGVFVGSG  254 (310)
Q Consensus       219 ~~~iPVv~ia~GGI~t~~di----~~~~~~GadgV~VGsa  254 (310)
                      ..++||++-...|-++++++    .+++++|++||-+=-.
T Consensus        73 ~~~~PviaD~d~Gyg~~~~~~~~v~~l~~aGa~gv~iED~  112 (290)
T 2hjp_A           73 TVSIPLIADIDTGFGNAVNVHYVVPQYEAAGASAIVMEDK  112 (290)
T ss_dssp             TCSSCEEEECTTTTSSHHHHHHHHHHHHHHTCSEEEEECB
T ss_pred             cCCCCEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEEcCC
Confidence            56899988888887787664    5677899999987443

>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A

Probab=80.37  E-value=15  Score=26.88  Aligned_cols=56  Identities=9%  Similarity=0.199  Sum_probs=38.4

Q ss_pred             HHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779          210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV  272 (310)
Q Consensus       210 ~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~  272 (310)
                      .++++.+++..++|++++  .+-.+.+...++++.|+++++.     ++-++.+....+...+
T Consensus        62 ~~~~~~lr~~~~~~ii~~--t~~~~~~~~~~~~~~ga~~~l~-----KP~~~~~l~~~i~~~l  117 (120)
T 3f6p_A           62 VEVCREVRKKYDMPIIML--TAKDSEIDKVIGLEIGADDYVT-----KPFSTRELLARVKANL  117 (120)
T ss_dssp             HHHHHHHHTTCCSCEEEE--EESSCHHHHHHHHHTTCCEEEE-----ESCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCEEEE--ECCCChHHHHHHHhCCcceeEc-----CCCCHHHHHHHHHHHH
Confidence            567777776567898765  3334678888999999998854     5556665555555444

>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}

Probab=80.24  E-value=15  Score=33.98  Aligned_cols=109  Identities=16%  Similarity=0.232  Sum_probs=0.0

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccch-----HHHHHHHHcCCCeee
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHF-----VEAQILEAIGVDYVD  119 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~-----~~~~~~~~aGad~v~  119 (310)
                      +.++.+.+.|++.+          +-+.|.......+.++++|+.+ ++|+.+...-++.     +.++.+.++|++.+-
T Consensus       153 ~~a~~~~~~Gf~~i----------Kik~g~~~~~~~e~v~avr~a~gd~~l~vD~n~~~~~~~a~~~~~~l~~~~i~~iE  222 (384)
T 2pgw_A          153 RDAAVGHAQGERVF----------YLKVGRGEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYDIEFIE  222 (384)
T ss_dssp             HHHHHHHHTTCCEE----------EEECCSCHHHHHHHHHHHHTTSTTCEEEEECTTCCCHHHHHHHHHHHGGGCCSEEE
T ss_pred             HHHHHHHHcCCCEE----------EECcCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcCCCEEe


Q ss_pred             ecCCCChhHHHHHHHhcCCCCcEEee--cCCHHHHHHHHHhCC-CEEEE
Q 037779          120 ESEVLTPADEENHINKHNFRVPFVCG--CRNLGESLRRIREGA-AMIRT  165 (310)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~l~v~~~--v~t~~ea~~a~~~Ga-d~I~v  165 (310)
                      .+-.....+..+.+++. .++++..+  +.+.++++++++.|+ |++.+
T Consensus       223 qP~~~~~~~~~~~l~~~-~~iPI~~de~i~~~~~~~~~i~~~~~d~v~i  270 (384)
T 2pgw_A          223 QPTVSWSIPAMAHVREK-VGIPIVADQAAFTLYDVYEICRQRAADMICI  270 (384)
T ss_dssp             CCSCTTCHHHHHHHHHH-CSSCEEESTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred             CCCChhhHHHHHHHHhh-CCCCEEEeCCcCCHHHHHHHHHcCCCCEEEE

>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}

Probab=80.01  E-value=18  Score=27.59  Aligned_cols=60  Identities=13%  Similarity=0.176  Sum_probs=42.1

Q ss_pred             cHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcC
Q 037779          209 PYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY  275 (310)
Q Consensus       209 ~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~  275 (310)
                      ..++++.+++. ..+||+++  ++-.+.+.+.+++++|+++++.     ++-++......+...+...
T Consensus        76 g~~~~~~l~~~~~~~~ii~~--s~~~~~~~~~~~~~~g~~~~l~-----Kp~~~~~l~~~i~~~~~~~  136 (152)
T 3eul_A           76 GAQVAAAVRSYELPTRVLLI--SAHDEPAIVYQALQQGAAGFLL-----KDSTRTEIVKAVLDCAKGR  136 (152)
T ss_dssp             HHHHHHHHHHTTCSCEEEEE--ESCCCHHHHHHHHHTTCSEEEE-----TTCCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhcCCCCeEEEE--EccCCHHHHHHHHHcCCCEEEe-----cCCCHHHHHHHHHHHHcCC
Confidence            35677777664 46788754  4445788899999999999855     5556666666676666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	310
d1znna1	254	c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase Pd	1e-142
d1yxya1	230	c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-p	2e-30
d1hg3a_	224	c.1.1.1 (A:) Triosephosphate isomerase {Archaeon P	3e-22
d1wv2a_	243	c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {	3e-21
d1y0ea_	222	c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosph	6e-16
d1xm3a_	251	c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {	5e-12
d1w0ma_	226	c.1.1.1 (A:) Triosephosphate isomerase {Thermoprot	2e-07
d2tpsa_	226	c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus	2e-06
d1xi3a_	206	c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon	2e-05
d1q6oa_	213	c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarbo	8e-05
d1gtea2	312	c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenas	3e-04
d1ep3a_	311	c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactoco	0.002
d1rd5a_	261	c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Ze	0.002

>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]} Length = 254

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: PdxS-like
domain: Pyridoxal biosynthesis lyase PdxS
species: Bacillus stearothermophilus [TaxId: 1422]

 Score =  398 bits (1024), Expect = e-142
 Identities = 172/254 (67%), Positives = 213/254 (83%)

Query: 35  RGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIP 94
           +GGVIMDVV  EQA+IAE AGA AVMALERVPADIRA GGVARM+DP +I+++ ++V+IP
Sbjct: 1   KGGVIMDVVNAEQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPTVIEEVMNAVSIP 60

Query: 95  VMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLR 154
           VMAK RIGH+VEA++LEA+GVDY+DESEVLTPADEE HI+K  F VPFVCGCR+LGE+ R
Sbjct: 61  VMAKVRIGHYVEARVLEALGVDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAAR 120

Query: 155 RIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVM 214
           RI EGA+M+RTKGE GTGNIVEAVRH+R V   IR + NM +DE+   AK + AP +++ 
Sbjct: 121 RIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNMSEDELVAEAKQLGAPVEVLR 180

Query: 215 QTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN 274
           + K+LGRLPVV+FAAGGV TPADAA+MM LG DGVFVGSG+FKS +P + ARAIV+A T+
Sbjct: 181 EIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTH 240

Query: 275 YSDPDVLAEVSCGL 288
           Y D +++A +S GL
Sbjct: 241 YEDYELIAHLSKGL 254

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Length = 230

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

 Score =  112 bits (280), Expect = 2e-30
 Identities = 40/247 (16%), Positives = 87/247 (35%), Gaps = 22/247 (8%)

Query: 27  KVGLAQMLRGGVIMDV-VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIK 85
           K  L + L+GG+I+     P +   +E  G   +MA     A   A     R +  + IK
Sbjct: 4   KEKLMEQLKGGIIVSCQALPGEPLYSETGGIMPLMAK----AAQEAGAVGIRANSVRDIK 59

Query: 86  QIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCG 145
           +I++   +P++   +  +  +   +          +EV   A     +   +        
Sbjct: 60  EIQAITDLPIIGIIKKDYPPQEPFI------TATMTEVDQLAALNIAVIAMDCTKRDRHD 113

Query: 146 CRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN 205
             ++   +R+++E         +  T +             D              +++ 
Sbjct: 114 GLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGI---DFVGTTLSG---YTPYSRQ 167

Query: 206 IAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRA 265
            A P   +++      + V+  A G + +P +A  +  LG  G+ VG  +     P   A
Sbjct: 168 EAGPDVALIEALCKAGIAVI--AEGKIHSPEEAKKINDLGVAGIVVGGAI---TRPKEIA 222

Query: 266 RAIVQAV 272
              ++A+
Sbjct: 223 ERFIEAL 229

>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 224

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

 Score = 90.8 bits (224), Expect = 3e-22
 Identities = 40/222 (18%), Positives = 74/222 (33%), Gaps = 16/222 (7%)

Query: 53  EAGACAVMALERVPADIRAQGGVARMSDPQLI--KQIKSSVTIPVMAKARIGHFVEAQIL 110
           EA     + + +    +  + GV  +  PQL+  + I  SV IPV A+        +   
Sbjct: 17  EATGKRALEIAKAAEKVYKETGVTIVVAPQLVDLRMIAESVEIPVFAQHIDPIKPGSHTG 76

Query: 111 EAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAG 170
             +     +   V T  +   +          +     +G  L  +        +   A 
Sbjct: 77  HVLPEAVKEAGAVGTLLNHSENRMILADLEAAIRRAEEVG--LMTMVCSNNPAVSAAVAA 134

Query: 171 TGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAG 230
                 AV     +   I V +           + I    +LV +     ++        
Sbjct: 135 LNPDYVAVEPPELIGTGIPVSKAK--------PEVITNTVELVKKVNPEVKV----LCGA 182

Query: 231 GVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272
           G++T  D    ++LG  GV + SGV K+ DP +    +V  +
Sbjct: 183 GISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAIWDLVSGI 224

>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} Length = 243

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 88.4 bits (219), Expect = 3e-21
 Identities = 29/243 (11%), Positives = 55/243 (22%), Gaps = 71/243 (29%)

Query: 30  LAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS 89
           L  ++       +        A EA     +A E +      +  V           +++
Sbjct: 57  LLDVIPPDRYTILPNTAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVET 116

Query: 90  SVTIPVMAKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNL 149
                 + K      V       I                                    
Sbjct: 117 LKAAEQLVKDGFDVMVYTSDDPIIARQL-------------------------------- 144

Query: 150 GESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAP 209
                    G   +          +     +   ++ +                      
Sbjct: 145 ------AEIGCIAVMPLAGLIGSGLGICNPYNLRIILEEA-------------------- 178

Query: 210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV 269
                         V      GV T +DAA+ M+LGC+ V + + +  + DPV  A A+ 
Sbjct: 179 -------------KVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMK 225

Query: 270 QAV 272
            A+
Sbjct: 226 HAI 228

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Length = 222

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

 Score = 73.4 bits (179), Expect = 6e-16
 Identities = 44/259 (16%), Positives = 73/259 (28%), Gaps = 58/259 (22%)

Query: 33  MLRGGVIMDVVTPEQARIAE---EAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS 89
           ML  G+I+      QA   E    +   + MAL    A         R +  + I  IK 
Sbjct: 2   MLPHGLIVSC----QALPDEPLHSSFIMSKMAL----AAYEGGAVGIRANTKEDILAIKE 53

Query: 90  SVTIPVMAKARIGHFVEAQILEA----------IGVDYV------DESEVLTPADEENHI 133
           +V +PV+   +  +      + A             + +       +    T  +  ++I
Sbjct: 54  TVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYI 113

Query: 134 NKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRN 193
             H   V  +     + E+    R G   I T     T      + +             
Sbjct: 114 RTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDF--------- 164

Query: 194 MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS 253
                              +    Q     V+  A G V TP     +M LG     VG 
Sbjct: 165 -----------------QFLKDVLQSVDAKVI--AEGNVITPDMYKRVMDLGVHCSVVGG 205

Query: 254 GVFKSGDPVRRARAIVQAV 272
            +     P    +  VQ +
Sbjct: 206 AI---TRPKEITKRFVQVM 221

>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} Length = 251

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Bacillus subtilis [TaxId: 1423]

 Score = 62.5 bits (152), Expect = 5e-12
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 219 LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT 273
           + +  V      G+ +P DAA  M+LG DGV + + V  + DPV+ ARA+  AV 
Sbjct: 173 IEQAKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMKLAVE 227

>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} Length = 226

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Thermoproteus tenax [TaxId: 2271]

 Score = 48.4 bits (114), Expect = 2e-07
 Identities = 11/45 (24%), Positives = 22/45 (48%)

Query: 229 AGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT 273
             G+ +  D A  ++LG  GV + S   K+ DP  +   + + ++
Sbjct: 179 GAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIVELAKPLS 223

>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} Length = 226

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Bacillus subtilis [TaxId: 1423]

 Score = 45.6 bits (107), Expect = 2e-06
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 3/85 (3%)

Query: 191 LRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVF 250
           L  +   E     + +     +    +Q   +P+V        T  +AA ++Q G DGV 
Sbjct: 141 LGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGG---ITIDNAAPVIQAGADGVS 197

Query: 251 VGSGVFKSGDPVRRARAIVQAVTNY 275
           + S + ++ DP   AR   + +  Y
Sbjct: 198 MISAISQAEDPESAARKFREEIQTY 222

>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} Length = 206

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]

 Score = 42.5 bits (99), Expect = 2e-05
 Identities = 11/60 (18%), Positives = 25/60 (41%)

Query: 213 VMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV 272
           +   +++     +   A G     +A  +++ G DG+ V S V  + D  +    + + V
Sbjct: 142 LEGLRKIVESVKIPVVAIGGINKDNAREVLKTGVDGIAVISAVMGAEDVRKATEELRKIV 201

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} Length = 213

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

 Score = 40.6 bits (94), Expect = 8e-05
 Identities = 12/86 (13%), Positives = 24/86 (27%), Gaps = 4/86 (4%)

Query: 190 VLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGV 249
           V+ +   D          A    + +   +G    V     G     D  +   +     
Sbjct: 131 VVYHRSRDAQAAGVAWGEADITAIKRLSDMGFKVTV----TGGLALEDLPLFKGIPIHVF 186

Query: 250 FVGSGVFKSGDPVRRARAIVQAVTNY 275
             G  +  +  PV  AR   +++   
Sbjct: 187 IAGRSIRDAASPVEAARQFKRSIAEL 212

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} Length = 312

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 39.6 bits (91), Expect = 3e-04
 Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 2/43 (4%)

Query: 217 KQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG 259
           + L   P++  A GG+ +       +  G   + V S V    
Sbjct: 251 RALPGFPIL--ATGGIDSAESGLQFLHSGASVLQVCSAVQNQD 291

>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} Length = 311

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme B [TaxId: 1358]

 Score = 36.9 bits (84), Expect = 0.002
 Identities = 13/56 (23%), Positives = 19/56 (33%)

Query: 209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRR 264
           P  L +  +    + +     GGVA   D   M   G   V VG+  F       +
Sbjct: 227 PVALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPK 282

>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} Length = 261

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Maize (Zea mays) [TaxId: 4577]

 Score = 36.7 bits (84), Expect = 0.002
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 15/69 (21%)

Query: 211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ 270
            L+ + K++   PV      G++ P     + Q G DGV +GS             A+V+
Sbjct: 190 SLIQEVKKVTNKPVA--VGFGISKPEHVKQIAQWGADGVIIGS-------------AMVR 234

Query: 271 AVTNYSDPD 279
            +   + P 
Sbjct: 235 QLGEAASPK 243

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	310
d1znna1	254	Pyridoxal biosynthesis lyase PdxS {Bacillus stearo	100.0
d1piia2	254	Indole-3-glycerophosphate synthase, IPGS {Escheric	100.0
d1vc4a_	254	Indole-3-glycerophosphate synthase, IPGS {Thermus	100.0
d1i4na_	251	Indole-3-glycerophosphate synthase, IPGS {Thermoto	100.0
d1a53a_	247	Indole-3-glycerophosphate synthase, IPGS {Archaeon	100.0
d1xi3a_	206	Thiamin phosphate synthase {Archaeon (Pyrococcus f	99.75
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	99.74
d2tpsa_	226	Thiamin phosphate synthase {Bacillus subtilis [Tax	99.72
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	99.7
d1xm3a_	251	Thiazole biosynthesis protein ThiG {Bacillus subti	99.58
d1vzwa1	239	Phosphoribosylformimino-5-aminoimidazole carboxami	99.52
d1qo2a_	241	Phosphoribosylformimino-5-aminoimidazole carboxami	99.52
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	99.52
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	99.51
d1wv2a_	243	Thiazole biosynthesis protein ThiG {Pseudomonas ae	99.48
d1jvna1	323	Cyclase subunit (or domain) of imidazoleglycerolph	99.46
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	99.45
d1vhna_	305	Putative flavin oxidoreducatase TM0096 {Thermotoga	99.3
d2flia1	217	D-ribulose-5-phosphate 3-epimerase {Streptococcus	99.28
d1rd5a_	261	Trp synthase alpha-subunit {Maize (Zea mays) [TaxI	99.26
d1qopa_	267	Trp synthase alpha-subunit {Salmonella typhimurium	99.24
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	99.22
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	99.2
d1h1ya_	220	D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa	99.2
d1jr1a1	378	Inosine monophosphate dehydrogenase (IMPDH) {Chine	99.15
d1w0ma_	226	Triosephosphate isomerase {Thermoproteus tenax [Ta	99.15
d1geqa_	248	Trp synthase alpha-subunit {Archaeon Pyrococcus fu	99.13
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	99.12
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	99.12
d1rpxa_	230	D-ribulose-5-phosphate 3-epimerase {Potato (Solanu	99.07
d1ujpa_	271	Trp synthase alpha-subunit {Thermus thermophilus [	99.06
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	99.06
d1tqxa_	221	D-ribulose-5-phosphate 3-epimerase {Plasmodium fal	99.05
d1hg3a_	224	Triosephosphate isomerase {Archaeon Pyrococcus woe	99.02
d1eepa_	388	Inosine monophosphate dehydrogenase (IMPDH) {Lyme	99.02
d1tqja_	221	D-ribulose-5-phosphate 3-epimerase {Synechocystis	98.96
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	98.93
d1q6oa_	213	3-keto-L-gulonate 6-phosphate decarboxylase {Esche	98.92
d1pvna1	362	Inosine monophosphate dehydrogenase (IMPDH) {Tritr	98.91
d1mxsa_	216	KDPG aldolase {Pseudomonas putida [TaxId: 303]}	98.88
d1ep3a_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	98.65
d2cu0a1	368	Inosine monophosphate dehydrogenase (IMPDH) {Pyroc	98.61
d1z41a1	337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	98.2
d1ojxa_	251	Archaeal fructose 1,6-bisphosphate aldolase {Archa	98.15
d1ps9a1	330	2,4-dienoyl-CoA reductase, N-terminal domain {Esch	98.11
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	98.07
d1vcfa1	310	Isopentenyl-diphosphate delta-isomerase {Thermus t	97.86
d1djqa1	340	Trimethylamine dehydrogenase, N-terminal domain {M	97.86
d1qapa1	167	Quinolinic acid phosphoribosyltransferase (Nicotin	97.85
d1qpoa1	169	Quinolinic acid phosphoribosyltransferase (Nicotin	97.85
d1twda_	247	Copper homeostasis protein CutC {Shigella flexneri	97.83
d1tb3a1	349	Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI	97.78
d1piia1	198	N-(5'phosphoribosyl)antranilate isomerase, PRAI {E	97.76
d1o4ua1	170	Quinolinic acid phosphoribosyltransferase (Nicotin	97.73
d1eixa_	231	Orotidine 5'-monophosphate decarboxylase (OMP deca	97.72
d2czda1	206	Orotidine 5'-monophosphate decarboxylase (OMP deca	97.69
d1nsja_	205	N-(5'phosphoribosyl)antranilate isomerase, PRAI {T	97.64
d1p4ca_	353	Membrane-associated (S)-mandelate dehydrogenase {P	97.63
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	97.6
d1v5xa_	200	N-(5'phosphoribosyl)antranilate isomerase, PRAI {T	97.57
d1km4a_	212	Orotidine 5'-monophosphate decarboxylase (OMP deca	97.56
d1juba_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	97.51
d1viza_	229	PcrB protein homolog YerE {Bacillus subtilis [TaxI	97.5
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	97.43
d1goxa_	359	Glycolate oxidase {Spinach (Spinacia oleracea) [Ta	97.41
d1mxsa_	216	KDPG aldolase {Pseudomonas putida [TaxId: 303]}	97.35
d1d3ga_	367	Dihydroorotate dehydrogenase {Human (Homo sapiens)	97.34
d1tv5a1	409	Dihydroorotate dehydrogenase {Plasmodium falciparu	97.31
d1kbia1	414	Flavocytochrome b2, C-terminal domain {Baker's yea	97.28
d1dbta_	237	Orotidine 5'-monophosphate decarboxylase (OMP deca	97.24
d2f6ua1	231	(S)-3-O-geranylgeranylglyceryl phosphate synthase	97.23
d1gwja_	374	Morphinone reductase {Pseudomonas putida [TaxId: 3	97.22
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	97.19
d1ub3a_	211	Deoxyribose-phosphate aldolase DeoC {Thermus therm	97.19
d1jvna1	323	Cyclase subunit (or domain) of imidazoleglycerolph	97.11
d1mzha_	225	Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli	97.09
d1n7ka_	234	Deoxyribose-phosphate aldolase DeoC {Archaeon Aero	97.02
d1o0ya_	251	Deoxyribose-phosphate aldolase DeoC {Thermotoga ma	97.0
d2b4ga1	312	Dihydroorotate dehydrogenase {Trypanosoma brucei [	96.97
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	96.93
d1f76a_	336	Dihydroorotate dehydrogenase {Escherichia coli [Ta	96.81
d1gvfa_	284	Tagatose-1,6-bisphosphate aldolase {Escherichia co	96.8
d1dxea_	253	2-dehydro-3-deoxy-galactarate aldolase {Escherichi	96.74
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	96.62
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	96.45
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	96.43
d1ea0a2	771	Alpha subunit of glutamate synthase, central and F	96.31
d1l6wa_	220	Decameric fructose-6-phosphate aldolase/transaldol	96.3
d1eepa_	388	Inosine monophosphate dehydrogenase (IMPDH) {Lyme	96.26
d1xm3a_	251	Thiazole biosynthesis protein ThiG {Bacillus subti	96.25
d1vzwa1	239	Phosphoribosylformimino-5-aminoimidazole carboxami	96.25
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	96.24
d1vpxa_	218	Decameric fructose-6-phosphate aldolase/transaldol	96.21
d1icpa_	364	12-oxophytodienoate reductase (OPR, OYE homolog) {	96.21
d1izca_	299	Macrophomate synthase {Macrophoma commelinae [TaxI	96.19
d1rvga_	305	Fructose-bisphosphate aldolase (FBP aldolase) {The	96.15
d1ofda2	809	Alpha subunit of glutamate synthase, central and F	96.12
d1to3a_	291	Putative aldolase YihT {Salmonella typhimurium [Ta	96.07
d1p1xa_	250	Deoxyribose-phosphate aldolase DeoC {Escherichia c	95.79
d1tb3a1	349	Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI	95.78
d1muma_	289	2-methylisocitrate lyase {Escherichia coli [TaxId:	95.58
d1vqta1	198	Orotidine 5'-monophosphate decarboxylase (OMP deca	95.57
d1pvna1	362	Inosine monophosphate dehydrogenase (IMPDH) {Tritr	95.52
d1qo2a_	241	Phosphoribosylformimino-5-aminoimidazole carboxami	95.45
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	95.44
d1jr1a1	378	Inosine monophosphate dehydrogenase (IMPDH) {Chine	95.4
d1wv2a_	243	Thiazole biosynthesis protein ThiG {Pseudomonas ae	95.35
d1s2wa_	275	Phosphoenolpyruvate mutase {Blue mussel (Mytilus e	95.33
d1wx0a1	211	Decameric fructose-6-phosphate aldolase/transaldol	95.13
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	95.1
d1vyra_	363	Pentaerythritol tetranirate reductase {Enterobacte	94.95
d1vcfa1	310	Isopentenyl-diphosphate delta-isomerase {Thermus t	94.77
d1e0ta2	246	Pyruvate kinase, N-terminal domain {Escherichia co	94.53
d1vhna_	305	Putative flavin oxidoreducatase TM0096 {Thermotoga	94.3
d1pkla2	258	Pyruvate kinase, N-terminal domain {Leishmania mex	93.99
d1goxa_	359	Glycolate oxidase {Spinach (Spinacia oleracea) [Ta	93.69
d1vcva1	226	Deoxyribose-phosphate aldolase DeoC {Archaeon Pyro	93.46
d2cu0a1	368	Inosine monophosphate dehydrogenase (IMPDH) {Pyroc	93.33
d1i4na_	251	Indole-3-glycerophosphate synthase, IPGS {Thermoto	93.33
d1vc4a_	254	Indole-3-glycerophosphate synthase, IPGS {Thermus	92.99
d1q45a_	380	12-oxophytodienoate reductase (OPR, OYE homolog) {	92.83
d1u0sy_	118	CheY protein {Thermotoga maritima [TaxId: 2336]}	92.52
d2pl1a1	119	PhoP receiver domain {Escherichia coli [TaxId: 562	92.45
d1a04a2	138	Nitrate/nitrite response regulator (NarL), receive	92.33
d1o5ka_	295	Dihydrodipicolinate synthase {Thermotoga maritima	92.25
d1m3ua_	262	Ketopantoate hydroxymethyltransferase PanB {Escher	92.2
d1dqwa_	267	Orotidine 5'-monophosphate decarboxylase (OMP deca	92.16
d1a53a_	247	Indole-3-glycerophosphate synthase, IPGS {Archaeon	92.13
d2r25b1	128	Response regulator Sin1 {Baker's yeast (Saccharomy	92.11
d2a9pa1	117	DNA-binding response regulator MicA, N-terminal do	91.86
d1n7ka_	234	Deoxyribose-phosphate aldolase DeoC {Archaeon Aero	91.81
d1zh2a1	119	Transcriptional regulatory protein KdpE, N-termina	91.71
d1ykwa1	283	Ribulose 1,5-bisphosphate carboxylase-oxygenase {C	91.62
d1piia2	254	Indole-3-glycerophosphate synthase, IPGS {Escheric	91.47
d1krwa_	123	NTRC receiver domain {Salmonella typhimurium [TaxI	91.38
d1juba_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	91.29
d1s2wa_	275	Phosphoenolpyruvate mutase {Blue mussel (Mytilus e	91.22
d1dbwa_	123	Transcriptional regulatory protein FixJ, receiver	91.15
d1xhfa1	121	Aerobic respiration control protein ArcA, N-termin	91.15
d1twda_	247	Copper homeostasis protein CutC {Shigella flexneri	91.12
d1a3xa2	265	Pyruvate kinase, N-terminal domain {Baker's yeast	91.11
d1k66a_	149	Response regulator for cyanobacterial phytochrome	90.9
d1oyaa_	399	Old yellow enzyme (OYE) {Lager yeast (Saccharomyce	90.76
d1k68a_	140	Response regulator for cyanobacterial phytochrome	90.75
d1vyra_	363	Pentaerythritol tetranirate reductase {Enterobacte	90.63
d1i3ca_	144	Response regulator for cyanobacterial phytochrome	90.61
d2g50a2	282	Pyruvate kinase, N-terminal domain {Rabbit (Orycto	90.27
d1mb3a_	123	Cell division response regulator DivK {Caulobacter	90.14
d7reqa2	168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	90.07
d1p4ca_	353	Membrane-associated (S)-mandelate dehydrogenase {P	90.04
d1s8na_	190	Probable two-component system transcriptional regu	89.89
d1kbia1	414	Flavocytochrome b2, C-terminal domain {Baker's yea	89.77
d1vr6a1	338	3-deoxy-D-arabino-heptulosonate-7-phosphate syntha	89.74
d1peya_	119	Sporulation response regulator Spo0F {Bacillus sub	89.71
d1gqna_	252	Type I 3-dehydroquinate dehydratase {Salmonella ty	89.58
d1xkya1	292	Dihydrodipicolinate synthase {Bacillus anthracis [	89.41
d1ny5a1	137	Transcriptional activator sigm54 (NtrC1), N-termin	89.16
d1qkka_	140	Transcriptional regulatory protein DctD, receiver	88.99
d1ep3a_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	88.86
d1dz3a_	123	Sporulation response regulator Spo0A {Bacillus ste	88.65
d1xkya1	292	Dihydrodipicolinate synthase {Bacillus anthracis [	88.34
d1ccwa_	137	Glutamate mutase, small subunit {Clostridium cochl	88.32
d1m5wa_	242	Pyridoxine 5'-phosphate synthase {Escherichia coli	87.47
d1kgsa2	122	PhoB receiver domain {Thermotoga maritima [TaxId:	87.28
d1muma_	289	2-methylisocitrate lyase {Escherichia coli [TaxId:	87.1
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	86.88
d1jbea_	128	CheY protein {Escherichia coli [TaxId: 562]}	86.85
d1zesa1	121	PhoB receiver domain {Escherichia coli [TaxId: 562	86.63
d1oy0a_	262	Ketopantoate hydroxymethyltransferase PanB {Mycoba	86.58
d1o66a_	260	Ketopantoate hydroxymethyltransferase PanB {Neisse	86.21
d1geha1	307	Ribulose 1,5-bisphosphate carboxylase-oxygenase {A	85.89
d2ayxa1	133	Sensor kinase protein RcsC, C-terminal domain {Esc	85.84
d2a4aa1	256	Fructose-1,6-bisphosphate aldolase {Plasmodium yoe	85.48
d1o5ka_	295	Dihydrodipicolinate synthase {Thermotoga maritima	85.4
d1zgza1	120	TorCAD operon transcriptional regulator TorD, N-te	85.37
d1tv5a1	409	Dihydroorotate dehydrogenase {Plasmodium falciparu	84.88
d2a6na1	292	Dihydrodipicolinate synthase {Escherichia coli [Ta	84.83
d1trea_	255	Triosephosphate isomerase {Escherichia coli [TaxId	84.67
d1tx2a_	273	Dihydropteroate synthetase {Bacillus anthracis [Ta	84.62
d1w25a1	139	Response regulator PleD, receiver domain {Caulobac	84.45
d1ys7a2	121	Transcriptional regulatory protein PrrA, N-termina	84.4
d1vlia2	295	Spore coat polysaccharide biosynthesis protein Sps	83.5
d1xxxa1	296	Dihydrodipicolinate synthase {Mycobacterium tuberc	83.39
d1qopa_	267	Trp synthase alpha-subunit {Salmonella typhimurium	83.32
d2p10a1	197	Uncharacterized protein Mll9387 {Mesorhizobium lot	83.29
d2fdsa1	324	Protozoan orotidine monophosphate decarboxylase {P	83.19
d3bofa1	260	Cobalamin-dependent methionine synthase MetH, C-te	82.83
d1vkfa_	172	Glycerol uptake operon antiterminator-related prot	82.57
d2btma_	251	Triosephosphate isomerase {Bacillus stearothermoph	82.34
d1hl2a_	295	N-acetylneuraminate lyase {Escherichia coli [TaxId	81.84
d1ajza_	282	Dihydropteroate synthetase {Escherichia coli [TaxI	81.7
d1xxxa1	296	Dihydrodipicolinate synthase {Mycobacterium tuberc	81.65
d1piia1	198	N-(5'phosphoribosyl)antranilate isomerase, PRAI {E	81.59
d2a6na1	292	Dihydrodipicolinate synthase {Escherichia coli [Ta	81.58
d1p2fa2	120	Response regulator DrrB {Thermotoga maritima [TaxI	81.34
d1z41a1	337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	80.82
d2zdra2	280	Capsule biosynthesis protein SiaC, N-terminal doma	80.61
d1dcfa_	134	Receiver domain of the ethylene receptor {Thale cr	80.48

>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: PdxS-like
domain: Pyridoxal biosynthesis lyase PdxS
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=5.8e-36  Score=258.57  Aligned_cols=254  Identities=68%  Similarity=1.077  Sum_probs=227.4

Q ss_pred             cCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcC
Q 037779           35 RGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIG  114 (310)
Q Consensus        35 ~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aG  114 (310)
                      +||.|+++.+++.|+.++++|+..++.|+++|.|+|.-+|..+++++..++++.+.+.+|++.|.+++|+.++|+|.+.|
T Consensus         1 kgGvimDv~~~eqA~iAe~aGAvaVmaLervpadiR~~GGvaRm~dp~~i~ei~~~vsipvmak~righ~~eaqiLe~~~   80 (254)
T d1znna1           1 KGGVIMDVVNAEQAKIAEAAGAVAVMALERVPADIRAAGGVARMADPTVIEEVMNAVSIPVMAKVRIGHYVEARVLEALG   80 (254)
T ss_dssp             CCEEEEEESSHHHHHHHHHHTCSEEEECC---------CCCCCCCCHHHHHHHHHHCSSCEEEEEETTCHHHHHHHHHHT
T ss_pred             CCceEEeccCHHHHHHhhccCceeEeeeccCCHHHHhcCCcccCCCHHHHHHHHHhcccccccccCCCchHHHHhHHhhC
Confidence            57999999999999999999999999999999999998999999999999999999999999999999999999999999


Q ss_pred             CCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceeccccc
Q 037779          115 VDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNM  194 (310)
Q Consensus       115 ad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~  194 (310)
                      .|++..++.++|.+....+.++.+.++++++++|+-|+.+-+..||..+...|+..++++.++++++|.+....+.+..+
T Consensus        81 vd~ideseVLTpad~~~hi~k~~fkvpfVcg~r~Lgealrri~EgAamIrtkGeagtgnvveav~h~R~i~~~i~~~~~m  160 (254)
T d1znna1          81 VDYIDESEVLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLRTKGEPGTGNIVEAVRHMRKVNAQIRKVVNM  160 (254)
T ss_dssp             CSEEEEETTSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHTTCSEEEECCCTTSCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCcccHhHhcccccHHHhhcccceeeeeeCCCCccchhHHHHHHHHHHHHhCCccCCCcHHHHHHHHHHHHHHHHHHHcC
Confidence            99999888999888887787777899999999999999999999999999999999999999999999999998877777


Q ss_pred             CchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          195 DDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       195 ~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      +.+.+...+++++.++++..++.+..++||+.|++|||.||.|+..++++|||||+|||+|++++||.++++++..++.+
T Consensus       161 ~~~el~~~ak~lg~p~~l~~~v~~~g~l~v~~~~~~Gi~tpadaa~~MelG~dgV~v~s~I~~s~dP~~~a~A~~~Avt~  240 (254)
T d1znna1         161 SEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYARAIVEATTH  240 (254)
T ss_dssp             CGGGHHHHHHHHTCCHHHHHHHHHHTSCSSEEEEESSCCSHHHHHHHHHTTCSEEEECGGGGGSSCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHhhCCchHHHHHHHHhCCCCceEEecCCCCChhhHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHc
Confidence            66666555677888999999999877777777999999999999999999999999999999999999999999999999


Q ss_pred             CCChhhHHhhhhcc
Q 037779          275 YSDPDVLAEVSCGL  288 (310)
Q Consensus       275 ~~~~~~~~~~~~~~  288 (310)
                      |.+|++++|++..+
T Consensus       241 ~~dp~~~~~~s~~l  254 (254)
T d1znna1         241 YEDYELIAHLSKGL  254 (254)
T ss_dssp             TTCHHHHHHHTTTC
T ss_pred             cCCHHHHHHhcCCC
Confidence            99999999998753

>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4e-34  Score=253.85  Aligned_cols=204  Identities=22%  Similarity=0.249  Sum_probs=174.5

Q ss_pred             ecceEEEEeccCCCccccccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHh
Q 037779           10 YGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS   89 (310)
Q Consensus        10 ~~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~   89 (310)
                      .++++|+|+||+|||+           |.+.+..+|..+..|.++||.+||+|    ||.++|+|+     +++++.+++
T Consensus        46 ~~~~iIAEiKraSPSk-----------G~i~~~~~p~~~a~~~~~gA~aiSVL----Te~~~F~Gs-----~~~l~~v~~  105 (254)
T d1piia2          46 ARTAFILECKKASPSK-----------GVIRDDFDPARIAAIYKHYASAISVL----TDEKYFQGS-----FNFLPIVSQ  105 (254)
T ss_dssp             SSCEEEEEECSEETTT-----------EESCSSCCHHHHHHHHTTTCSEEEEE----CCSTTTCCC-----TTHHHHHHH
T ss_pred             CCCceehhhhhcccch-----------hhhcccchhHHHHHHHHhccCceEEe----cccccCCCC-----HHHHHHHHh
Confidence            3689999999999999           99999999866667889999999999    999999999     899999999


Q ss_pred             hcCcceEeeccccchHHHHHHHH--cCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEE
Q 037779           90 SVTIPVMAKARIGHFVEAQILEA--IGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRT  165 (310)
Q Consensus        90 ~~~lPv~~kd~i~~~~~~~~~~~--aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v  165 (310)
                      .+++|+++|||+.+  ++|++++  +|||.|+ +...+++.++..++.. +..|+.+++++||.+|+.++.+.|+++|++
T Consensus       106 ~~~~PiLrKDFIid--~~QI~ear~~GADavLLI~~~L~~~~l~~l~~~a~~lgl~~LVEvh~~~El~~a~~~~a~iIGI  183 (254)
T d1piia2         106 IAPQPILCKDFIID--PYQIYLARYYQADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIALGAKVVGI  183 (254)
T ss_dssp             HCCSCEEEESCCCS--HHHHHHHHHTTCSEEEEETTTCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHTTCSEEEE
T ss_pred             ccccccchhcccCc--HHHHHHHHhhccchhhhhHhhhcccHHHHHHHHHHHHhhhHHHhhccHHHHHHHHhhcccccCc
Confidence            99999999999984  5665555  9999998 8888888777777766 668999999999999999999999999999


Q ss_pred             ecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC
Q 037779          166 KGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG  245 (310)
Q Consensus       166 ~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G  245 (310)
                      |+                     |++.+++.|        +....++.+.+++  +..+  |+++||++++|+..+ ..|
T Consensus       184 Nn---------------------RnL~tf~vd--------~~~t~~L~~~ip~--~~~~--VsESGI~~~~d~~~l-~~g  229 (254)
T d1piia2         184 NN---------------------RDLRDLSID--------LNRTRELAPKLGH--NVTV--ISESGINTYAQVREL-SHF  229 (254)
T ss_dssp             ES---------------------EETTTTEEC--------THHHHHHHHHHCT--TSEE--EEESCCCCHHHHHHH-TTT
T ss_pred             cc---------------------cchhhhhhh--------hHHHHHHHHhCCC--CCEE--EEcCCCCCHHHHHHH-HcC
Confidence            94                     466666432        3335677777765  2333  789999999999886 679


Q ss_pred             CCEEEEccccccCCCHHHHHHHHH
Q 037779          246 CDGVFVGSGVFKSGDPVRRARAIV  269 (310)
Q Consensus       246 adgV~VGsai~~~~dp~~~~~~~~  269 (310)
                      +|+|+||++||+++||.+.+++++
T Consensus       230 ~davLiGeslm~~~dp~~~l~~Ll  253 (254)
T d1piia2         230 ANGFLIGSALMAHDDLHAAVRRVL  253 (254)
T ss_dssp             CSEEEECHHHHTCSCHHHHHHHHH
T ss_pred             CCEEEEChHHhCCCCHHHHHHHHh
Confidence            999999999999999999988764

>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.8e-33  Score=248.02  Aligned_cols=206  Identities=19%  Similarity=0.234  Sum_probs=166.8

Q ss_pred             ecceEEEEeccCCCccccccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHh
Q 037779           10 YGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS   89 (310)
Q Consensus        10 ~~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~   89 (310)
                      .|.++|+|+||+|||+           |.+++....++|+.|+++||++||++    ||.++|+|+     +++++.+++
T Consensus        44 ~~~~vIAEiKr~SPS~-----------G~i~~~dp~~~A~~y~~~GA~aiSVL----Te~~~F~Gs-----~~dl~~v~~  103 (254)
T d1vc4a_          44 PGLSVIAEVKRQSPSE-----------GLIREVDPVEAALAYARGGARAVSVL----TEPHRFGGS-----LLDLKRVRE  103 (254)
T ss_dssp             SSCEEEEEECSCCTTT-----------CCCCSCCHHHHHHHHHHTTCSEEEEE----CCCSSSCCC-----HHHHHHHHH
T ss_pred             CCCeEEEEeeecCCCC-----------CccccCCHHHHHHHHHhcCCceEEEE----cCccccccc-----HHHHHHHHH
Confidence            4578999999999999           99987433589999999999999999    999999999     999999999


Q ss_pred             hcCcceEeeccccchHHHHHHH--HcCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEE
Q 037779           90 SVTIPVMAKARIGHFVEAQILE--AIGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRT  165 (310)
Q Consensus        90 ~~~lPv~~kd~i~~~~~~~~~~--~aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v  165 (310)
                      .+++||++|||+.+  ++|+++  .+|||+|+ +... ...++.+++.. +..|+.+++++||.+|+.++.+.|+++|++
T Consensus       104 ~~~iPvLrKDFIid--~~QI~ea~~~GADaVLLIaal-l~~~l~~l~~~A~~lgl~~LVEvh~~~El~~a~~~~a~iIGI  180 (254)
T d1vc4a_         104 AVDLPLLRKDFVVD--PFMLEEARAFGASAALLIVAL-LGELTGAYLEEARRLGLEALVEVHTERELEIALEAGAEVLGI  180 (254)
T ss_dssp             HCCSCEEEESCCCS--HHHHHHHHHTTCSEEEEEHHH-HGGGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHHTCSEEEE
T ss_pred             HcCCCcccCCcccc--HHHHHHHHhccchHHHHHHHH-HHHHHHHHHHHHHHhCCceEEEeccHHHHhhhhcCCCCEEEE
Confidence            99999999999985  555554  49999998 5443 33444454444 557899999999999999999999999999


Q ss_pred             ecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC
Q 037779          166 KGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG  245 (310)
Q Consensus       166 ~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G  245 (310)
                      |.                     |++.+++.|        .....++.+.+++.. ..++.|++|||+|++|+..+ +.|
T Consensus       181 Nn---------------------RdL~t~~vd--------~~~~~~l~~~i~~~~-~~~i~IsESGI~~~~dv~~l-~~g  229 (254)
T d1vc4a_         181 NN---------------------RDLATLHIN--------LETAPRLGRLARKRG-FGGVLVAESGYSRKEELKAL-EGL  229 (254)
T ss_dssp             ES---------------------BCTTTCCBC--------TTHHHHHHHHHHHTT-CCSEEEEESCCCSHHHHHTT-TTT
T ss_pred             ec---------------------cchhhhhcc--------hHHHHHhhhcccccC-CCCEEEEccCCCCHHHHHHH-HcC
Confidence            95                     456665432        233455656666532 13344899999999999775 679


Q ss_pred             CCEEEEccccccCCCHHHHHHHHH
Q 037779          246 CDGVFVGSGVFKSGDPVRRARAIV  269 (310)
Q Consensus       246 adgV~VGsai~~~~dp~~~~~~~~  269 (310)
                      +|||+||++||+++||.+.+++|.
T Consensus       230 ~davLIGesLm~~~d~~~~l~~L~  253 (254)
T d1vc4a_         230 FDAVLIGTSLMRAPDLEAALRELV  253 (254)
T ss_dssp             CSEEEECHHHHTSSCHHHHHHHHH
T ss_pred             CCEEEEChhhcCCCCHHHHHHHhc
Confidence            999999999999999999988875

>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=6e-33  Score=245.87  Aligned_cols=206  Identities=17%  Similarity=0.211  Sum_probs=170.6

Q ss_pred             cceEEEEeccCCCccccccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHh
Q 037779           11 GNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS   89 (310)
Q Consensus        11 ~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~   89 (310)
                      +.++|+|+||+|||+           |.+.+..+| ++|+.|+ +||++||+|    ||.++|+|+     +++++.+++
T Consensus        40 ~~~iIAEiKr~SPS~-----------G~i~~~~d~~~~a~~ye-~GA~aiSVL----Td~~~F~Gs-----~~~l~~vr~   98 (251)
T d1i4na_          40 RVKIIAEFKKASPSA-----------GDINADASLEDFIRMYD-ELADAISIL----TEKHYFKGD-----PAFVRAARN   98 (251)
T ss_dssp             SCEEEEEECSBCSSS-----------CBSCTTCCHHHHHHHHH-HHCSEEEEE----CCCSSSCCC-----THHHHHHHT
T ss_pred             CCeEEEeeecCCCCC-----------CCCcCCccHHHHHHHHh-cCCcceEEe----cccCCCCCC-----HHHHHHHhh
Confidence            588999999999999           999988886 6788885 699999999    999999999     899999999


Q ss_pred             hcCcceEeeccccchHHHHHHHHcCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHH-hCCCEEEEe
Q 037779           90 SVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIR-EGAAMIRTK  166 (310)
Q Consensus        90 ~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~-~Gad~I~v~  166 (310)
                      .+++|+++|||+.+..++.....+|||.|+ +.+.++..++...+.. +..|+.+++++||.+|+.++++ .++++|++|
T Consensus        99 ~~~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L~~~~l~~l~~~a~~lgle~LvEvh~~~El~~al~~~~a~iiGIN  178 (251)
T d1i4na_          99 LTCRPILAKDFYIDTVQVKLASSVGADAILIIARILTAEQIKEIYEAAEELGMDSLVEVHSREDLEKVFSVIRPKIIGIN  178 (251)
T ss_dssp             TCCSCEEEECCCCSTHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHTTTCEEEEEECSHHHHHHHHTTCCCSEEEEE
T ss_pred             cccCchhhhhhhhCHHHHHHHHhhccceEEeecccccHHHHHHHHHHHHHhCCeeecccCCHHHHHHHhcccccceeeee
Confidence            999999999999853333344449999998 7788888888777776 7789999999999999999986 579999999


Q ss_pred             cCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCC
Q 037779          167 GEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGC  246 (310)
Q Consensus       167 g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~Ga  246 (310)
                      .                     |++.+++.        +.....++.+.+++  +..+  |+++||++++++..+ +.|+
T Consensus       179 n---------------------RdL~t~~v--------d~~~~~~L~~~ip~--~~~~--IaESGI~~~~d~~~l-~~G~  224 (251)
T d1i4na_         179 T---------------------RDLDTFEI--------KKNVLWELLPLVPD--DTVV--VAESGIKDPRELKDL-RGKV  224 (251)
T ss_dssp             C---------------------BCTTTCCB--------CTTHHHHHGGGSCT--TSEE--EEESCCCCGGGHHHH-TTTC
T ss_pred             e---------------------cchhccch--------hhhHHHHHHhhCCC--CCEE--EEcCCCCCHHHHHHH-HhCC
Confidence            5                     35566543        22334555555554  3344  789999999999876 6899


Q ss_pred             CEEEEccccccCCCHHHHHHHHHHH
Q 037779          247 DGVFVGSGVFKSGDPVRRARAIVQA  271 (310)
Q Consensus       247 dgV~VGsai~~~~dp~~~~~~~~~~  271 (310)
                      |+|+||++||+++||...+++++..
T Consensus       225 davLIG~sLm~~~~p~~~l~~l~a~  249 (251)
T d1i4na_         225 NAVLVGTSIMKAENPRRFLEEMRAW  249 (251)
T ss_dssp             SEEEECHHHHHCSSHHHHHHHHHHH
T ss_pred             CEEEEChHHhCCCCHHHHHHHHHhc
Confidence            9999999999999999998888753

>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=5e-32  Score=240.09  Aligned_cols=196  Identities=19%  Similarity=0.233  Sum_probs=161.2

Q ss_pred             cceEEEEeccCCCccccccceeeecCCccccCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHh
Q 037779           11 GNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKS   89 (310)
Q Consensus        11 ~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~   89 (310)
                      ..++|+|+||+|||+           |.+.  .+| +++ .|.++||+++|+|    ||.++|+|+     ++++..+++
T Consensus        44 ~~~iIaEiKr~SPS~-----------g~i~--~d~~~~a-~~~~~gA~aiSVL----Td~~~F~Gs-----~~dl~~v~~  100 (247)
T d1a53a_          44 ITAIIAEYKRKSPSG-----------LDVE--RDPIEYS-KFMERYAVGLSIL----TEEKYFNGS-----YETLRKIAS  100 (247)
T ss_dssp             CCCEEEEECSBCTTS-----------CBCC--CCHHHHH-HHHTTTCSEEEEE----CCCTTTCCC-----HHHHHHHHH
T ss_pred             CCeEEeeEecCCCCC-----------Cccc--cCHHHHH-HHHHhCCCeEEEe----cCccccccc-----hHHHHHHHh
Confidence            368999999999999           8884  355 555 5778999999999    999999999     999999999


Q ss_pred             hcCcceEeeccccchHHHHHHHHcCCCeee-ecCCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEec
Q 037779           90 SVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTKG  167 (310)
Q Consensus        90 ~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g  167 (310)
                      .+++|+++|||+.+..++.....+|||.|+ +...++..++.+.+.. +..|+.+++++||.+|+.++.+.|+++|++|+
T Consensus       101 ~~~~PiLrKDFIid~~QI~ea~~~GADaiLLI~~~L~~~~l~~l~~~a~~lgl~~LvEvh~~~El~~a~~~~a~iIGINn  180 (247)
T d1a53a_         101 SVSIPILMKDFIVKESQIDDAYNLGADTVLLIVKILTERELESLLEYARSYGMEPLIEINDENDLDIALRIGARFIGINS  180 (247)
T ss_dssp             HCCSCEEEESCCCSHHHHHHHHHHTCSEEEEEGGGSCHHHHHHHHHHHHTTTCCCEEEECSHHHHHHHHHTTCSEEEEES
T ss_pred             ccccceeecccccChHHHHHHHHhhcchhhhhhhhccHHHHHHHHHHHHHHhhhHHhhcCCHHHHHHHHhCCCCeEeeec
Confidence            999999999999853344444559999998 7777777777777766 77899999999999999999999999999995


Q ss_pred             CCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCC
Q 037779          168 EAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCD  247 (310)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~Gad  247 (310)
                      +                     ++.++..|        .....++.+.+++  ++.+  |++|||++++++.++.++|+|
T Consensus       181 R---------------------nL~t~~vd--------~~~~~~L~~~ip~--~~~~--IaESGI~t~~dv~~l~~~G~d  227 (247)
T d1a53a_         181 R---------------------DLETLEIN--------KENQRKLISMIPS--NVVK--VAESGISERNEIEELRKLGVN  227 (247)
T ss_dssp             B---------------------CTTTCCBC--------HHHHHHHHHHSCT--TSEE--EEESCCCCHHHHHHHHHTTCC
T ss_pred             c---------------------Chhhhhhh--------hhHHHHHHhhCCC--CCeE--EEecCCCCHHHHHHHHHCCCC
Confidence            4                     45554432        2224556666654  3444  789999999999999999999


Q ss_pred             EEEEccccccCCCHH
Q 037779          248 GVFVGSGVFKSGDPV  262 (310)
Q Consensus       248 gV~VGsai~~~~dp~  262 (310)
                      ||+||++||+++||.
T Consensus       228 avLIGeaLmk~~d~~  242 (247)
T d1a53a_         228 AFLIGSSLMRNPEKI  242 (247)
T ss_dssp             EEEECHHHHHCTTHH
T ss_pred             EEEECHHHcCCCchh
Confidence            999999999998873

>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]

Probab=99.75  E-value=3.2e-17  Score=141.58  Aligned_cols=193  Identities=19%  Similarity=0.240  Sum_probs=136.7

Q ss_pred             eecCCccccCC---CHHHHHHHHHcCCcEEEecc--cccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHH
Q 037779           33 MLRGGVIMDVV---TPEQARIAEEAGACAVMALE--RVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEA  107 (310)
Q Consensus        33 ~l~~g~i~~~~---~~~~a~~~~~~Ga~~I~~l~--~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~  107 (310)
                      +||...|++..   ..+.++.+.++|+++| ++|  ..+.+  .+     ......++++++..+.++++++.+      
T Consensus         5 ~l~ly~ITd~~~~~~~~~v~~~l~~Gv~~v-qlR~k~~~~~--e~-----~~~a~~l~~i~~~~~~~liind~~------   70 (206)
T d1xi3a_           5 KLKLYVITDRRLKPEVESVREALEGGATAI-QMRIKNAPTR--EM-----YEIGKTLRQLTREYDALFFVDDRV------   70 (206)
T ss_dssp             HTSEEEECCTTTSCHHHHHHHHHHTTCSEE-EECCCSCCHH--HH-----HHHHHHHHHHHHHTTCEEEEESCH------
T ss_pred             CCeEEEEeCCcccCHHHHHHHHHHcCCCEE-EEcCCCCCHH--HH-----HHHHHHHHHHHHHcCCeEEechhH------
Confidence            34445554432   2578999999999998 563  11111  11     011345667777788999988664      


Q ss_pred             HHHHHcCCCeeeec-CCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhc
Q 037779          108 QILEAIGVDYVDES-EVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMG  186 (310)
Q Consensus       108 ~~~~~aGad~v~~~-~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~  186 (310)
                      +.+...|+|+||.. ...+ ....+   ..+.+..++.++|+.+|+..+.+.|+||+.+. +.+.+.             
T Consensus        71 ~lA~~~~adGvHl~~~~~~-~~~~~---~~~~~~iig~s~h~~~e~~~a~~~g~DYi~~g-pvf~T~-------------  132 (206)
T d1xi3a_          71 DVALAVDADGVQLGPEDMP-IEVAK---EIAPNLIIGASVYSLEEALEAEKKGADYLGAG-SVFPTK-------------  132 (206)
T ss_dssp             HHHHHHTCSEEEECTTSCC-HHHHH---HHCTTSEEEEEESSHHHHHHHHHHTCSEEEEE-CSSCC--------------
T ss_pred             HHHHhccCceEeecccccc-Hhhhh---hcccccccccccCCHHHHHHHHhcCCCEEEec-cccccc-------------
Confidence            46778999999943 3332 22222   23456888899999999999999999999985 443221             


Q ss_pred             ceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHH
Q 037779          187 DIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       187 ~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~  266 (310)
                              ++.      ......++.++++.+..++||++  -||| +++++.+++++||+||.+.|+|++++||.+.++
T Consensus       133 --------tk~------~~~~~g~~~l~~~~~~~~~Pv~A--iGGI-~~~ni~~~~~~Ga~gvAvis~I~~~~dp~~~~~  195 (206)
T d1xi3a_         133 --------TKE------DARVIGLEGLRKIVESVKIPVVA--IGGI-NKDNAREVLKTGVDGIAVISAVMGAEDVRKATE  195 (206)
T ss_dssp             -----------------CCCCCHHHHHHHHHHHCSSCEEE--ESSC-CTTTHHHHHTTTCSEEEESHHHHTSSSHHHHHH
T ss_pred             --------ccc------ccccccHHHHHHHHHhcCCCEEE--ECCC-CHHHHHHHHHhCCCEEEEhHHHHCCCCHHHHHH
Confidence                    100      01123577778887777899955  5999 699999999999999999999999999999999


Q ss_pred             HHHHHHHc
Q 037779          267 AIVQAVTN  274 (310)
Q Consensus       267 ~~~~~~~~  274 (310)
                      +|.+.+++
T Consensus       196 ~l~~~~~~  203 (206)
T d1xi3a_         196 ELRKIVEE  203 (206)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998874

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.74  E-value=4.1e-17  Score=142.11  Aligned_cols=176  Identities=20%  Similarity=0.294  Sum_probs=128.4

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc----------chHHHHHHHHcCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG----------HFVEAQILEAIGV  115 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~----------~~~~~~~~~~aGa  115 (310)
                      ++|+++.++|+.+++.-                 ..+.++.+++.++.|+.......          +......+..+|+
T Consensus        37 ~~A~a~~~~Ga~~i~~~-----------------~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga   99 (230)
T d1yxya1          37 LMAKAAQEAGAVGIRAN-----------------SVRDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNI   99 (230)
T ss_dssp             HHHHHHHHHTCSEEEEE-----------------SHHHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTC
T ss_pred             HHHHHHHHCCCeEEEec-----------------ChhhHHHHHhhhhcchhhhhcccCCcceeeechhHHHHHHHHhcCC
Confidence            78999999999998321                 15678899999998877643321          2356667778999


Q ss_pred             Ceeee-c------CCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcce
Q 037779          116 DYVDE-S------EVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDI  188 (310)
Q Consensus       116 d~v~~-~------~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~  188 (310)
                      |.+.. .      +.....+.++.+..+..++.+..+++|.++++++.+.|+|++.+++...++.               
T Consensus       100 d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~t~~~a~~a~~~Gad~i~~~~~~~~~~---------------  164 (230)
T d1yxya1         100 AVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPY---------------  164 (230)
T ss_dssp             SEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTT---------------
T ss_pred             CEEEEecccccccchhhHHHHHHHHHhcCCCceEecCCCCHHHHHHHHhcCCCEEEeeccccccc---------------
Confidence            98762 1      1223345666666666778888999999999999999999999875533321               


Q ss_pred             ecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 037779          189 RVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAI  268 (310)
Q Consensus       189 ~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~  268 (310)
                         .. .         .......+ ..+....++||  |++|||+|++|+.+++++|||+|+|||+|++   |...+++|
T Consensus       165 ---~~-~---------~~~~~~~~-~~~~~~~~ipv--ia~GGI~t~~d~~~al~~GAd~V~vGsAi~~---p~~i~~~~  225 (230)
T d1yxya1         165 ---SR-Q---------EAGPDVAL-IEALCKAGIAV--IAEGKIHSPEEAKKINDLGVAGIVVGGAITR---PKEIAERF  225 (230)
T ss_dssp             ---SC-C---------SSSCCHHH-HHHHHHTTCCE--EEESCCCSHHHHHHHHTTCCSEEEECHHHHC---HHHHHHHH
T ss_pred             ---cc-c---------cchHHHHH-HHHHhcCCCeE--EEeCCCCCHHHHHHHHHcCCCEEEEChhhcC---HHHHHHHH
Confidence               00 0         01112333 33334467999  6799999999999999999999999999994   88888999


Q ss_pred             HHHH
Q 037779          269 VQAV  272 (310)
Q Consensus       269 ~~~~  272 (310)
                      .+++
T Consensus       226 ~~~~  229 (230)
T d1yxya1         226 IEAL  229 (230)
T ss_dssp             HHHT
T ss_pred             HHHh
Confidence            8875

>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.72  E-value=5.4e-17  Score=142.14  Aligned_cols=199  Identities=17%  Similarity=0.207  Sum_probs=136.7

Q ss_pred             eeecCCccccCC----C-HHHHHHHHHcCCcEEEecccccc---hhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccc
Q 037779           32 QMLRGGVIMDVV----T-PEQARIAEEAGACAVMALERVPA---DIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGH  103 (310)
Q Consensus        32 ~~l~~g~i~~~~----~-~~~a~~~~~~Ga~~I~~l~~~~~---d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~  103 (310)
                      ++++...|.+..    + .+.++.+.++|++.| ++|....   +.+.+     ......++.+++..+++++++|.+  
T Consensus        15 ~~~~ly~i~~~~~~~~~~~~~v~~al~~Gv~~i-qlR~K~~~~~~~~~~-----~~~a~~l~~lc~~~~~~liInd~~--   86 (226)
T d2tpsa_          15 ELLSVYFIMGSNNTKADPVTVVQKALKGGATLY-QFREKGGDALTGEAR-----IKFAEKAQAACREAGVPFIVNDDV--   86 (226)
T ss_dssp             HHTTEEEEECGGGCSSCHHHHHHHHHHHTCSEE-EECCCSTTCCCHHHH-----HHHHHHHHHHHHHHTCCEEEESCH--
T ss_pred             hhCCEEEEECccccccCHHHHHHHHHHCCCCEE-EEcCCCccchhHHHH-----HHHHHHHHHHHHHhCCeEEEcCCH--
Confidence            344455554332    2 478999999999998 5531100   00111     111344556677789999998764  


Q ss_pred             hHHHHHHHHcCCCeeeec-CCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHH
Q 037779          104 FVEAQILEAIGVDYVDES-EVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVR  182 (310)
Q Consensus       104 ~~~~~~~~~aGad~v~~~-~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~  182 (310)
                          +.+.+.|+|+||.. ..+++....+.+    ....++.++||.+|+..+.+.|+||+.+. +.+.+..        
T Consensus        87 ----~lA~~~~adGvHl~~~d~~~~~~r~~~----~~~iig~S~h~~~e~~~a~~~g~DYi~~g-pvf~T~s--------  149 (226)
T d2tpsa_          87 ----ELALNLKADGIHIGQEDANAKEVRAAI----GDMILGVSAHTMSEVKQAEEDGADYVGLG-PIYPTET--------  149 (226)
T ss_dssp             ----HHHHHHTCSEEEECTTSSCHHHHHHHH----TTSEEEEEECSHHHHHHHHHHTCSEEEEC-CSSCCCS--------
T ss_pred             ----HHHhhccCCEEEeccccchhhhhhhcc----cceeeeeeccchHHHHHHHhCcCCeEEEe-ccccccc--------
Confidence                36777899999943 444554444333    23678889999999999999999999984 5442210        


Q ss_pred             HhhcceecccccCchhHHhhhccCCCcHHHHHHHHh-cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCH
Q 037779          183 SVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDP  261 (310)
Q Consensus       183 ~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~-~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp  261 (310)
                                  .++.      ......++++.+.+ ..++||++  -||| |++++.+++++|++||.+.|+|++++||
T Consensus       150 ------------K~~~------~~~~~~~~~~~~~~~~~~~Pv~A--iGGI-~~~ni~~l~~~Ga~giAvis~I~~a~dp  208 (226)
T d2tpsa_         150 ------------KKDT------RAVQGVSLIEAVRRQGISIPIVG--IGGI-TIDNAAPVIQAGADGVSMISAISQAEDP  208 (226)
T ss_dssp             ------------SSSC------CCCCTTHHHHHHHHTTCCCCEEE--ESSC-CTTTSHHHHHTTCSEEEESHHHHTSSCH
T ss_pred             ------------cccc------ccccccchhHHHHHhcCCCCEEE--ecCC-CHHHHHHHHHhCCCEEEEhHHhhcCCCH
Confidence                        0000      01123556666654 46789965  5999 6999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCC
Q 037779          262 VRRARAIVQAVTNYS  276 (310)
Q Consensus       262 ~~~~~~~~~~~~~~~  276 (310)
                      .+.+++|++.+++|+
T Consensus       209 ~~~~~~~~~~~~~~k  223 (226)
T d2tpsa_         209 ESAARKFREEIQTYK  223 (226)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998764

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.70  E-value=6.1e-16  Score=133.61  Aligned_cols=180  Identities=22%  Similarity=0.194  Sum_probs=132.8

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee--ccc--------cchHHHHHHHHcC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK--ARI--------GHFVEAQILEAIG  114 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k--d~i--------~~~~~~~~~~~aG  114 (310)
                      .++|+++..+|+.+++..                 ..+.++.+++..+.|+...  .+.        .+...++.+..+|
T Consensus        26 a~~A~aa~~~Ga~~i~~~-----------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag   88 (222)
T d1y0ea_          26 SKMALAAYEGGAVGIRAN-----------------TKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQ   88 (222)
T ss_dssp             HHHHHHHHHHTCSEEEEE-----------------SHHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCeEEecC-----------------CHHHHHHHHHhcCCccceeeccCCcchHHhhcccHHHHHhHHHcC
Confidence            367999999999998421                 1567888888888887542  111        1345667778899


Q ss_pred             CCeeeec------CCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcce
Q 037779          115 VDYVDES------EVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDI  188 (310)
Q Consensus       115 ad~v~~~------~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~  188 (310)
                      +|.+...      ......+..+.+.+++....+..+++|.+++.++.+.|+|++.+.+..++...              
T Consensus        89 ad~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~t~~~a~~~~~~g~d~i~~~~~~~~~~~--------------  154 (222)
T d1y0ea_          89 CEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYT--------------  154 (222)
T ss_dssp             CSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTS--------------
T ss_pred             CCEEEeeccccccccchHHHHHHHHHHhCCceEEeecCCCHHHHHHHHHcCCCeEEEeccCCcccc--------------
Confidence            9998732      11234567777777777888889999999999999999999987543222110              


Q ss_pred             ecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 037779          189 RVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAI  268 (310)
Q Consensus       189 ~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~  268 (310)
                         .....         ....++++.++.+..++||  |++|||.|++|+.+++++|||+|++||+|++   |...+++|
T Consensus       155 ---~~~~~---------~~~~~~~i~~~~~~~~iPV--ia~GGI~t~~d~~~~~~~GAdgV~iGsAi~r---p~~~~~~f  217 (222)
T d1y0ea_         155 ---QGQLL---------YQNDFQFLKDVLQSVDAKV--IAEGNVITPDMYKRVMDLGVHCSVVGGAITR---PKEITKRF  217 (222)
T ss_dssp             ---TTCCT---------THHHHHHHHHHHHHCCSEE--EEESSCCSHHHHHHHHHTTCSEEEECHHHHC---HHHHHHHH
T ss_pred             ---cCccc---------hhhHHHHHHHHHhcCCCcE--EEeCCCCCHHHHHHHHHcCCCEEEEchhhcC---HHHHHHHH
Confidence               00000         1124677777777788999  6799999999999999999999999999985   89999999


Q ss_pred             HHHH
Q 037779          269 VQAV  272 (310)
Q Consensus       269 ~~~~  272 (310)
                      .+.+
T Consensus       218 ~~~l  221 (222)
T d1y0ea_         218 VQVM  221 (222)
T ss_dssp             HHTT
T ss_pred             HHHh
Confidence            8765

>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Bacillus subtilis [TaxId: 1423]

Probab=99.58  E-value=2.3e-15  Score=129.96  Aligned_cols=151  Identities=25%  Similarity=0.343  Sum_probs=117.7

Q ss_pred             HHHHHHhcCCC-CcEEeecCCHHHHHHHHH-----hCCCEEEEe--cCC--CCCchHHHHHHHHHhhcc-eecccccCch
Q 037779          129 EENHINKHNFR-VPFVCGCRNLGESLRRIR-----EGAAMIRTK--GEA--GTGNIVEAVRHVRSVMGD-IRVLRNMDDD  197 (310)
Q Consensus       129 ~~~~~~~~~~~-l~v~~~v~t~~ea~~a~~-----~Gad~I~v~--g~~--~~~~~~~~~~~~~~~~~~-~~~l~~~~~d  197 (310)
                      +.+.+..+++. ++..++|+|.+|+.+..+     .|-+.|++.  +..  ..++..+++++++++.++ |.+++|+++|
T Consensus        56 ~l~~i~~~~~~lLPNTAGc~tA~EAvr~A~lARE~~~t~~IKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlpY~~~D  135 (251)
T d1xm3a_          56 FLEQLDLSKYTLLPNTAGASTAEEAVRIARLAKASGLCDMIKVEVIGCSRSLLPDPVETLKASEQLLEEGFIVLPYTSDD  135 (251)
T ss_dssp             -CTTCCGGGSEEEEECTTCSSHHHHHHHHHHHHHTTCCSSEEECCBCCTTTCCBCHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             hhhhccccceEEccchHHHhhHHHHHHHHHHHHHhcCCceEEEEEecCCCCcCCCHHHHHHHHHHHHhCCcEEEEecCCC
Confidence            33334333344 678889999999987664     266888864  333  246788999999999997 9999999999


Q ss_pred             hHHhh-------------------hccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          198 EVFTF-------------------AKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       198 ~~~~~-------------------~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      +++..                   .+++. +...++.+.+..++||  |+.+||++|.|+.+++++|||+|++.|+|.++
T Consensus       136 ~v~ak~Le~~Gc~avMPlgsPIGSg~Gl~-n~~~l~~i~~~~~vPv--IvDAGIG~pSdAa~AMElG~daVLvNTAIA~a  212 (251)
T d1xm3a_         136 VVLARKLEELGVHAIMPGASPIGSGQGIL-NPLNLSFIIEQAKVPV--IVDAGIGSPKDAAYAMELGADGVLLNTAVSGA  212 (251)
T ss_dssp             HHHHHHHHHHTCSCBEECSSSTTCCCCCS-CHHHHHHHHHHCSSCB--EEESCCCSHHHHHHHHHTTCSEEEESHHHHTS
T ss_pred             HHHHHHHHHcCChhHHHhhhhhhcCCCcC-ChHHHHHHHhcCCccE--EEecCCCCHHHHHHHHHccCCEEEechhhhcC
Confidence            98652                   12333 3445567766678999  56899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCChhhHH
Q 037779          259 GDPVRRARAIVQAVTNYSDPDVLA  282 (310)
Q Consensus       259 ~dp~~~~~~~~~~~~~~~~~~~~~  282 (310)
                      .||..|+++|+.++++.+......
T Consensus       213 ~dPv~MA~A~~~Av~AGR~a~~aG  236 (251)
T d1xm3a_         213 DDPVKMARAMKLAVEAGRLSYEAG  236 (251)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999876554443

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.52  E-value=1.3e-13  Score=121.23  Aligned_cols=207  Identities=20%  Similarity=0.241  Sum_probs=132.3

Q ss_pred             ccceeeecCCccc---cCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccc
Q 037779           28 VGLAQMLRGGVIM---DVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGH  103 (310)
Q Consensus        28 ~~~~~~l~~g~i~---~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~  103 (310)
                      .+.++++.+|...   ...+| ++|+.|.+.|+++++.+     |.....+.  ..+.+.++.+.+.+.+|+.+...+.+
T Consensus        13 ~g~vV~~~~g~~~~~~~~~dP~~~a~~~~~~ga~~l~i~-----DLd~~~~~--~~~~~~i~~i~~~~~~pi~vGGGIrs   85 (239)
T d1vzwa1          13 DGQAVRLVHGESGTETSYGSPLEAALAWQRSGAEWLHLV-----DLDAAFGT--GDNRALIAEVAQAMDIKVELSGGIRD   85 (239)
T ss_dssp             TTEEBC--------CCBCCCHHHHHHHHHHTTCSEEEEE-----EHHHHHTS--CCCHHHHHHHHHHCSSEEEEESSCCS
T ss_pred             CCeEEEEECccccCeeecCCHHHHHHHHHHcCCCEEEEE-----eecccccc--cchHHHHHHHHhhcCcceEeeccccc
Confidence            3455555555532   23465 89999999999998654     22222222  34688999999999999999999988


Q ss_pred             hHHHHHHHHcCCCeeee-cCCCChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCC-CCchHHHHHH
Q 037779          104 FVEAQILEAIGVDYVDE-SEVLTPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAG-TGNIVEAVRH  180 (310)
Q Consensus       104 ~~~~~~~~~aGad~v~~-~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~-~~~~~~~~~~  180 (310)
                      .++++.+++.|++.|.+ +...+.+++.+.+.+ .+..+.+..+...            ..+..+|+.. +....+.++.
T Consensus        86 ~~~~~~ll~~Ga~kVvi~s~~~~~~~~~~~~~~~~g~~~vv~~d~~~------------~~~~~~g~~~~~~~~~~~~~~  153 (239)
T d1vzwa1          86 DDTLAAALATGCTRVNLGTAALETPEWVAKVIAEHGDKIAVGLDVRG------------TTLRGRGWTRDGGDLYETLDR  153 (239)
T ss_dssp             HHHHHHHHHTTCSEEEECHHHHHCHHHHHHHHHHHGGGEEEEEEEET------------TEECCSSSCCCCCBHHHHHHH
T ss_pred             chhhhhhhccccccchhhHHhhhccccchhhhccCCceeeeeeccce------------eeecCccceeeccccchhhhh
Confidence            88999999999999983 332233344433333 2222222222211            0122234322 2234455666


Q ss_pred             HHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc---CCCEEEEcccccc
Q 037779          181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL---GCDGVFVGSGVFK  257 (310)
Q Consensus       181 ~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~---GadgV~VGsai~~  257 (310)
                      ..+.+.....+..+++|++.     .+.+.++++.+.+..++|+  +++|||++.+|+.++.+.   |++||+|||+|+.
T Consensus       154 ~~~~g~~eii~tdi~~dGt~-----~G~d~~l~~~i~~~~~~pv--i~sGGv~s~~Di~~l~~l~~~g~~gvivg~al~~  226 (239)
T d1vzwa1         154 LNKEGCARYVVTDIAKDGTL-----QGPNLELLKNVCAATDRPV--VASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYA  226 (239)
T ss_dssp             HHHTTCCCEEEEEC------------CCCHHHHHHHHHTCSSCE--EEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHT
T ss_pred             hhhccccEEEEEeeccccee-----cCCcchhhhhhhhccCceE--EEECCCCCHHHHHHHHhhhhCCccEeeEhHHHHC
Confidence            66666655666777777763     4678999999988888999  679999999999998764   9999999999999


Q ss_pred             CCC
Q 037779          258 SGD  260 (310)
Q Consensus       258 ~~d  260 (310)
                      ..=
T Consensus       227 g~i  229 (239)
T d1vzwa1         227 KAF  229 (239)
T ss_dssp             TSS
T ss_pred             CCC
Confidence            773

>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Thermotoga maritima [TaxId: 2336]

Probab=99.52  E-value=5.2e-14  Score=123.91  Aligned_cols=216  Identities=15%  Similarity=0.136  Sum_probs=146.1

Q ss_pred             ccceeeecCCccc----cCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc
Q 037779           28 VGLAQMLRGGVIM----DVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG  102 (310)
Q Consensus        28 ~~~~~~l~~g~i~----~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~  102 (310)
                      .+.+++|.+|...    +..+| ++|+.|.+.|+++++.+   +.|. ...|.  ..+...+..+++ ..+|+.+...+.
T Consensus        11 ~GkvVrl~~G~~~~~~~y~~dP~~~a~~~~~~g~~~l~iv---DLda-~~~~~--~~~~~~~~~~~~-~~~pl~~gGGI~   83 (241)
T d1qo2a_          11 RGKVARMIKGRKENTIFYEKDPVELVEKLIEEGFTLIHVV---DLSN-AIENS--GENLPVLEKLSE-FAEHIQIGGGIR   83 (241)
T ss_dssp             TTEEEEEGGGCGGGEEEESSCHHHHHHHHHHTTCCCEEEE---EHHH-HHHCC--CTTHHHHHHGGG-GGGGEEEESSCC
T ss_pred             CCEEEEEeCcccCCceEECCCHHHHHHHHHHCCCCEEEEE---eccc-ccccC--Ccchhheehhcc-cccchhhhhhhh
Confidence            4667777777763    34566 89999999999998655   1222 22222  334555555554 458999998888


Q ss_pred             chHHHHHHHHcCCCeeee-cCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCC--CchHHHHH
Q 037779          103 HFVEAQILEAIGVDYVDE-SEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGT--GNIVEAVR  179 (310)
Q Consensus       103 ~~~~~~~~~~aGad~v~~-~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~--~~~~~~~~  179 (310)
                      +.+.++.+.+.|++.|.. +.....+.+.+...+.+..+.+.+++++            ..+.++++...  -...+.++
T Consensus        84 s~~~~~~~~~~Ga~kVvi~s~~~~~~~~~~~~~~~~~~~~v~iD~~~------------~~~~~~g~~~~~~~~~~~~~~  151 (241)
T d1qo2a_          84 SLDYAEKLRKLGYRRQIVSSKVLEDPSFLKSLREIDVEPVFSLDTRG------------GRVAFKGWLAEEEIDPVSLLK  151 (241)
T ss_dssp             SHHHHHHHHHTTCCEEEECHHHHHCTTHHHHHHTTTCEEEEEEEEET------------TEECCTTCSSCSCCCHHHHHH
T ss_pred             hhhhhhhccccccceEecCcccccCchhhhhhcccccceeeeccccc------------ccccccCcccceeeehhHHHH
Confidence            888999999999999983 3222223344444432222333333322            12333443211  24456666


Q ss_pred             HHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC------CCEEEEcc
Q 037779          180 HVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG------CDGVFVGS  253 (310)
Q Consensus       180 ~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G------adgV~VGs  253 (310)
                      .+.+++.....+..++.|++.     .+.+.++++.+.+..++|+  +++||+++.+|+.++.+.|      ++||++||
T Consensus       152 ~~~~~g~~eii~~dId~dGt~-----~G~d~~l~~~i~~~~~~pv--i~~GGv~s~~di~~l~~ig~~~~~~~~gvivG~  224 (241)
T d1qo2a_         152 RLKEYGLEEIVHTEIEKDGTL-----QEHDFSLTKKIAIEAEVKV--LAAGGISSENSLKTAQKVHTETNGLLKGVIVGR  224 (241)
T ss_dssp             HHHTTTCCEEEEEETTHHHHT-----CCCCHHHHHHHHHHHTCEE--EEESSCCSHHHHHHHHHHHHHTTTSEEEEEECH
T ss_pred             HhhccccceEEEeehhhhhhc-----cccchhhhhhhhccCCceE--EEECCCCCHHHHHHHHHccccccCCEeeEEEHH
Confidence            677777777777788888873     5678999999988778999  6799999999999998755      89999999


Q ss_pred             ccccCCCHHHHHHHHH
Q 037779          254 GVFKSGDPVRRARAIV  269 (310)
Q Consensus       254 ai~~~~dp~~~~~~~~  269 (310)
                      +|+...-..+.+++|.
T Consensus       225 al~~g~l~~~~~k~~l  240 (241)
T d1qo2a_         225 AFLEGILTVEVMKRYA  240 (241)
T ss_dssp             HHHTTSSCHHHHHHHH
T ss_pred             HHHCCCCCHHHHHHHh
Confidence            9998875566666664

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=99.52  E-value=9.7e-14  Score=123.05  Aligned_cols=207  Identities=18%  Similarity=0.211  Sum_probs=138.9

Q ss_pred             cCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee
Q 037779           41 DVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        41 ~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      +..+| ++|+.|.+.|+++++.+.   .+. ...+  ...+.+.++++++.+++|+++...+...+.++.+..+||+.|.
T Consensus        28 ~~gdP~~~a~~~~~~g~dei~ivD---ld~-~~~~--~~~~~~~i~~i~~~~~~pi~vgGGIr~~e~i~~~l~~Ga~kvi  101 (253)
T d1thfd_          28 DSGDPVELGKFYSEIGIDELVFLD---ITA-SVEK--RKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVS  101 (253)
T ss_dssp             CTTCHHHHHHHHHHTTCCEEEEEE---SSC-SSSH--HHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEE
T ss_pred             ECCCHHHHHHHHHHcCCCEEEEEe---ecc-cccC--cccHHHHHHHHHhccCccceeecccccchhhhhHHhcCCCEEE
Confidence            44566 899999999999997652   111 1111  1234778899999999999999999888899999999999987


Q ss_pred             -ecCCC-ChhHHHHHHHhcCCC-CcEEeecCCHHHHHHHHHhCCCEEEEecCCC--CCchHHHHHHHHHhhcceeccccc
Q 037779          120 -ESEVL-TPADEENHINKHNFR-VPFVCGCRNLGESLRRIREGAAMIRTKGEAG--TGNIVEAVRHVRSVMGDIRVLRNM  194 (310)
Q Consensus       120 -~~~~~-~~~~~~~~~~~~~~~-l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~--~~~~~~~~~~~~~~~~~~~~l~~~  194 (310)
                       .+... +|..+.+.....+.. +.+..++..        ..+--.+..+++..  ...+.+.++...+++.....+.++
T Consensus       102 igs~~~~n~~~l~~~~~~~G~~~iv~~id~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI  173 (253)
T d1thfd_         102 INTAAVENPSLITQIAQTFGSQAVVVAIDAKR--------VDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSI  173 (253)
T ss_dssp             ESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEE--------ETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEET
T ss_pred             EChHHhhChHHHHHHHHHcCCeeEEEeeeecc--------cCCceeeeeeecccccchhHHHHHHHHHhccCCEEEEEEe
Confidence             33332 344444444333322 222222210        00111223332211  113445566666666666666777


Q ss_pred             CchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 037779          195 DDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAI  268 (310)
Q Consensus       195 ~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~  268 (310)
                      +.|++     ..+.+.++++.+.+..++|+  +++||+++++|+.++.+.|++||++|++|+......+.++++
T Consensus       174 ~~dGt-----~~G~d~~ll~~i~~~~~~pv--i~~GGv~s~~di~~l~~~g~~gvivgsal~~~~~~~~~~k~~  240 (253)
T d1thfd_         174 DRDGT-----KSGYDTEMIRFVRPLTTLPI--IASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEY  240 (253)
T ss_dssp             TTTTS-----CSCCCHHHHHHHGGGCCSCE--EEESCCCSHHHHHHHHHTTCSEEEESHHHHTTCSCHHHHHHH
T ss_pred             cccCc-----cCCccccccccccccccceE--EEecCCCCHHHHHHHHHCCCCEEEEchHHHcCCCCHHHHHHH
Confidence            77765     35678999999988888999  679999999999999999999999999999887544444444

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.51  E-value=1.2e-13  Score=122.33  Aligned_cols=220  Identities=20%  Similarity=0.227  Sum_probs=146.6

Q ss_pred             cceeeecCCccc---cCCCH-HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccch
Q 037779           29 GLAQMLRGGVIM---DVVTP-EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHF  104 (310)
Q Consensus        29 ~~~~~l~~g~i~---~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~  104 (310)
                      +.++++++|...   +..+| ++|+.|.+.|+++++...   .+. ...+  ...+.+.++++.+.+++|+++...+.+.
T Consensus        15 g~vv~~kg~~~~~~~~~~dP~~~a~~~~~~gadei~ivD---l~~-~~~~--~~~~~~~i~~i~~~~~~pi~~gGGIr~~   88 (252)
T d1h5ya_          15 GAKVVVKGVNFQGIREVGDPVEMAVRYEEEGADEIAILD---ITA-APEG--RATFIDSVKRVAEAVSIPVLVGGGVRSL   88 (252)
T ss_dssp             GGCEECTTCCCHHHHEEECHHHHHHHHHHTTCSCEEEEE---CCC-CTTT--HHHHHHHHHHHHHHCSSCEEEESSCCSH
T ss_pred             CEEEEEEeecCcceEECCCHHHHHHHHHHCCCCEEEEEe---ccc-cccc--cccHHHHHHHHHhhcCCcceeecccchh
Confidence            344455555432   33455 899999999999986541   111 1111  1223677899999999999999999888


Q ss_pred             HHHHHHHHcCCCeeee-cCC-CChhHHHHHHHhcCCC-CcEEeecCCHHHHHHHHHhCCCEEEEecCCCCC--chHHHHH
Q 037779          105 VEAQILEAIGVDYVDE-SEV-LTPADEENHINKHNFR-VPFVCGCRNLGESLRRIREGAAMIRTKGEAGTG--NIVEAVR  179 (310)
Q Consensus       105 ~~~~~~~~aGad~v~~-~~~-~~~~~~~~~~~~~~~~-l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~--~~~~~~~  179 (310)
                      +.++.+..+|++.|.. +.. .++..+.+..+..+.. +.+.++++.-        .+--.+.++++....  ...+.++
T Consensus        89 e~~~~ll~~G~~kVii~s~~~~~~~~~~~~~~~~G~q~iv~slD~~~~--------~~~~~v~~~~~~~~~~~~~~~~~~  160 (252)
T d1h5ya_          89 EDATTLFRAGADKVSVNTAAVRNPQLVALLAREFGSQSTVVAIDAKWN--------GEYYEVYVKGGREATGLDAVKWAK  160 (252)
T ss_dssp             HHHHHHHHHTCSEEEESHHHHHCTHHHHHHHHHHCGGGEEEEEEEEEC--------SSSEEEEETTTTEEEEEEHHHHHH
T ss_pred             hhhhhHhhcCCcEEEecccccCCcchHHHHHHhcCCCcEEEEEEEEEc--------CCcEEEEEeCCeEcCCCCHHHHHH
Confidence            8999999999999983 322 2344444434333322 3333343210        000134444442211  3446666


Q ss_pred             HHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          180 HVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       180 ~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                      .+.+++.....+..++.|++     ..+.+.++++.+.+..++|+  +++|||++.+|+.++.+.|++||++|++|+...
T Consensus       161 ~~~~~g~~eii~tdI~~dG~-----~~G~d~~~~~~i~~~~~~pi--i~~GGv~~~~di~~l~~~g~~gv~~gs~l~~~~  233 (252)
T d1h5ya_         161 EVEELGAGEILLTSIDRDGT-----GLGYDVELIRRVADSVRIPV--IASGGAGRVEHFYEAAAAGADAVLAASLFHFRV  233 (252)
T ss_dssp             HHHHHTCSEEEEEETTTTTT-----CSCCCHHHHHHHHHHCSSCE--EEESCCCSHHHHHHHHHTTCSEEEESHHHHTTS
T ss_pred             HHHhcCCCEEEEEeecccCc-----cCCcCHHHHHHHHHhcCCCE--EEecCCCCHHHHHHHHHCCCCEEEEhhHHHcCC
Confidence            66777676666677777765     34678999999988888999  679999999999999999999999999999987


Q ss_pred             CHHHHHHHHH
Q 037779          260 DPVRRARAIV  269 (310)
Q Consensus       260 dp~~~~~~~~  269 (310)
                      .....++++.
T Consensus       234 ~~~~~lk~~l  243 (252)
T d1h5ya_         234 LSIAQVKRYL  243 (252)
T ss_dssp             SCHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            6555555543

>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.48  E-value=2.3e-13  Score=118.33  Aligned_cols=148  Identities=23%  Similarity=0.372  Sum_probs=111.2

Q ss_pred             HHHHHHhcCCC-CcEEeecCCHHHHHHHHH----hC--CCEEEEe--cCCC--CCchHHHHHHHHHhhcc-eecccccCc
Q 037779          129 EENHINKHNFR-VPFVCGCRNLGESLRRIR----EG--AAMIRTK--GEAG--TGNIVEAVRHVRSVMGD-IRVLRNMDD  196 (310)
Q Consensus       129 ~~~~~~~~~~~-l~v~~~v~t~~ea~~a~~----~G--ad~I~v~--g~~~--~~~~~~~~~~~~~~~~~-~~~l~~~~~  196 (310)
                      +...++...+. ++...+|+|.+|+.++.+    .+  -+.|+..  +...  -++..+++++++.+.++ |.+++|+++
T Consensus        57 l~~~i~~~~~~~LPNTAGc~taeeAv~~A~larE~~~~~~~iKLEVi~d~~~L~Pd~~etl~Aa~~Lv~egF~Vlpy~~~  136 (243)
T d1wv2a_          57 LLDVIPPDRYTILPNTAGCYDAVEAVRTCRLARELLDGHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSD  136 (243)
T ss_dssp             -----CTTTSEEEEECTTCCSHHHHHHHHHHHHTTTTSCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECS
T ss_pred             HHHhccccCeeecccccccccHHHHHHHHHHHHHHhCCCceEEEeeeccccccCCcHHHHHHHHHHhhcCceEEEeccCC
Confidence            34444443333 677888999999987664    32  3788764  3322  35678999999999887 999999999


Q ss_pred             hhHHhh-------------------hccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          197 DEVFTF-------------------AKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       197 d~~~~~-------------------~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                      |+++..                   ++++.. ...++.+.+..++||  |+.+||++++|+.+++++|||||+++|+|.+
T Consensus       137 D~v~ak~le~~Gc~~vMplgsPIGsg~Gi~n-~~~l~~i~~~~~vpv--ivdAGIg~psdaa~AMElG~dgVLvnsaIa~  213 (243)
T d1wv2a_         137 DPIIARQLAEIGCIAVMPLAGLIGSGLGICN-PYNLRIILEEAKVPV--LVDAGVGTASDAAIAMELGCEAVLMNTAIAH  213 (243)
T ss_dssp             CHHHHHHHHHSCCSEEEECSSSTTCCCCCSC-HHHHHHHHHHCSSCB--EEESCCCSHHHHHHHHHHTCSEEEESHHHHT
T ss_pred             CHHHHhHHHHcCceeeeeccccccccccccc-HHHHHhccccCCcce--EeecccCCHHHHHHHHHccCCEEEechHhhc
Confidence            988531                   123333 344566666678999  5689999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCChh
Q 037779          258 SGDPVRRARAIVQAVTNYSDPD  279 (310)
Q Consensus       258 ~~dp~~~~~~~~~~~~~~~~~~  279 (310)
                      +.||..|+++|+.++++.+...
T Consensus       214 A~dP~~mA~A~~~Av~agr~a~  235 (243)
T d1wv2a_         214 AKDPVMMAEAMKHAIVAGRLAY  235 (243)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999765443

>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

Probab=99.46  E-value=3.4e-13  Score=123.04  Aligned_cols=214  Identities=17%  Similarity=0.187  Sum_probs=135.8

Q ss_pred             CCCH-HHHHHHHHcCCcEEEecccccchhhhc-CCC-CCCCChHHHHHHHhhcCcceEeeccccc-----------hHHH
Q 037779           42 VVTP-EQARIAEEAGACAVMALERVPADIRAQ-GGV-ARMSDPQLIKQIKSSVTIPVMAKARIGH-----------FVEA  107 (310)
Q Consensus        42 ~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r~~-~G~-~~~~~~~~i~~i~~~~~lPv~~kd~i~~-----------~~~~  107 (310)
                      .++| ++|+.|.+.||++++.+     |.... .|. .+..+.+.++++++.+.+|+.+...+.+           .+.+
T Consensus        47 iGdP~~~a~~~~~~gaDeL~iv-----Didas~~~~~~~~~~~~~I~~i~~~~~vPi~vGGGIrsi~di~~~~~~~~e~A  121 (323)
T d1jvna1          47 LGKPVQLAQKYYQQGADEVTFL-----NITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVA  121 (323)
T ss_dssp             CHHHHHHHHHHHHTTCSEEEEE-----EEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHH
T ss_pred             cCCHHHHHHHHHHCCCCEEEEE-----ECcCCCCCcCCCchHHHHHHhhccccceeEEEecCcccHHHhhhccchhhHHH
Confidence            3465 88999999999999765     33322 221 1223467789999999999999988764           3457


Q ss_pred             HHHHHcCCCeee-ecCCCChhHH-------------HHHH-HhcCCCCcEEeec--CCHHH---HHH---------HHHh
Q 037779          108 QILEAIGVDYVD-ESEVLTPADE-------------ENHI-NKHNFRVPFVCGC--RNLGE---SLR---------RIRE  158 (310)
Q Consensus       108 ~~~~~aGad~v~-~~~~~~~~~~-------------~~~~-~~~~~~l~v~~~v--~t~~e---a~~---------a~~~  158 (310)
                      +.++.+|||.|. .+.....+++             ++.+ +..|. ..+++++  +....   ...         ....
T Consensus       122 ~~ll~~GadKVvI~T~ai~~p~~~~e~~~~~~n~~li~~i~~~fGs-q~IvvsiD~k~~~~~~~~~~~~~~~~~~~~~~~  200 (323)
T d1jvna1         122 SLYFRSGADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGA-QAVVISVDPKRVYVNSQADTKNKVFETEYPGPN  200 (323)
T ss_dssp             HHHHHHTCSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCG-GGEEEEECEEEEEESSGGGCSSCCEECSSCCTT
T ss_pred             HHHHHcCCCeEEechHHhhChHHHHHHHhhcccchhHHHHHHHhCC-ceEEEEEEEEeccccccccccccccccccccCC
Confidence            889999999998 3322211121             1222 11111 2222222  10000   000         0000


Q ss_pred             CCC----EEEEecCCC-CC-chHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCC
Q 037779          159 GAA----MIRTKGEAG-TG-NIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGV  232 (310)
Q Consensus       159 Gad----~I~v~g~~~-~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI  232 (310)
                      +-+    .+.++|+.. ++ .+.+.++.+.+++.....++.++.|++     ..+.+.++++.+.+..++|+  |++||+
T Consensus       201 ~~~~~~y~v~~~gg~~~t~~~l~~~i~~~~~~G~GEIlltdIdrDGt-----~~G~D~el~~~i~~~~~iPi--IasGGi  273 (323)
T d1jvna1         201 GEKYCWYQCTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGS-----NSGYDLELIEHVKDAVKIPV--IASSGA  273 (323)
T ss_dssp             CCCEEEEEEEETTTTEEEEEEHHHHHHHHHHTTCCEEEECCGGGTTT-----CSCCCHHHHHHHHHHCSSCE--EECSCC
T ss_pred             CccceeEEEEEcCCeEecCchHHHHhhhhhccCcceeEEEeeccccc-----ccccchhHHHHHHHhCCCCE--EEECCC
Confidence            000    122333211 11 356777788888888888888888886     35778999999998888999  689999


Q ss_pred             CCHHHHHHHHH-cCCCEEEEccccccCCCHHHHHHHH
Q 037779          233 ATPADAAMMMQ-LGCDGVFVGSGVFKSGDPVRRARAI  268 (310)
Q Consensus       233 ~t~~di~~~~~-~GadgV~VGsai~~~~dp~~~~~~~  268 (310)
                      ++++|+.++++ .|++||++|++|+....-...++++
T Consensus       274 ~s~~di~~ll~~~~v~gv~~gs~~~~~~~si~elK~~  310 (323)
T d1jvna1         274 GVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEY  310 (323)
T ss_dssp             CSHHHHHHHHHHSCCSEEEESHHHHTTSCCHHHHHHH
T ss_pred             CCHHHHHHHHHhCCCeEEEEhhHHHcCCCCHHHHHHH
Confidence            99999998775 5899999999999876544334443

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=99.45  E-value=9.5e-13  Score=116.39  Aligned_cols=207  Identities=20%  Similarity=0.201  Sum_probs=138.9

Q ss_pred             ccCCCH-HHHHHHHHcCCcEEEecccccchhh-hcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCe
Q 037779           40 MDVVTP-EQARIAEEAGACAVMALERVPADIR-AQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDY  117 (310)
Q Consensus        40 ~~~~~~-~~a~~~~~~Ga~~I~~l~~~~~d~r-~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~  117 (310)
                      .+..+| ++|+.|.+.|+++++.+     |.. ...+  ...+.+.++.+.+.+.+|+++...+.+.+.++.+..+||+.
T Consensus        27 ~~~gdP~~~a~~~~~~g~dei~ii-----Dl~~~~~~--~~~~~~~i~~i~~~~~~pi~vgGGIrs~e~~~~ll~~Ga~k   99 (251)
T d1ka9f_          27 RDAGDPVEAARAYDEAGADELVFL-----DISATHEE--RAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADK   99 (251)
T ss_dssp             SSTTCHHHHHHHHHHHTCSCEEEE-----ECCSSTTC--HHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSE
T ss_pred             EECCCHHHHHHHHHHcCCCEEEEE-----eccccccc--chhHHHHHHHHHhccCcchheeccccCHHHHHHHHHcCCCE
Confidence            345566 78999999999998665     221 1111  12346788999999999999999998888999999999999


Q ss_pred             eee-cCCCChhHHHHHHHh-cCCCCcEEee--cCCHHHHHHHHHhCCCEEEEecCCCC--CchHHHHHHHHHhhcceecc
Q 037779          118 VDE-SEVLTPADEENHINK-HNFRVPFVCG--CRNLGESLRRIREGAAMIRTKGEAGT--GNIVEAVRHVRSVMGDIRVL  191 (310)
Q Consensus       118 v~~-~~~~~~~~~~~~~~~-~~~~l~v~~~--v~t~~ea~~a~~~Gad~I~v~g~~~~--~~~~~~~~~~~~~~~~~~~l  191 (310)
                      |.. +.....+++.+.+.+ .+. ..++++  ++.-        ..-..+.++++...  -...+.++...+.+.....+
T Consensus       100 Vii~s~~~~n~~~i~~~~~~~G~-q~iv~~id~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~eii~  170 (251)
T d1ka9f_         100 VSVNSAAVRRPELIRELADHFGA-QAVVLAIDARWR--------GDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILL  170 (251)
T ss_dssp             EEECHHHHHCTHHHHHHHHHHCG-GGEEEEEEEEEE--------TTEEEEEETTTTEEEEEEHHHHHHHHHHHTCCEEEE
T ss_pred             EEECchhhhCHHHHHHHHHhhcc-cccccccchhhc--------ccceEEEeccceecCCccHHHHHHHHHhcCCCEEEE
Confidence            873 332222333333333 222 222222  1100        00012333333211  12345566666666666666


Q ss_pred             cccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 037779          192 RNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV  269 (310)
Q Consensus       192 ~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~  269 (310)
                      .+++.|++     ..+.+.++++.+.+..++|+  |++||+++.+|+.++.+.|++||++|++|+........++++.
T Consensus       171 tdi~~dG~-----~~G~d~~l~~~i~~~~~~pi--i~~GGv~~~~dl~~l~~~g~~gviig~al~~g~~~~~~~k~~l  241 (251)
T d1ka9f_         171 TSMDRDGT-----KEGYDLRLTRMVAEAVGVPV--IASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPKLKRYL  241 (251)
T ss_dssp             EETTTTTT-----CSCCCHHHHHHHHHHCSSCE--EEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHH
T ss_pred             EeecccCc-----cCCcchhHHHHHHhhcceeE--EEecCCCCHHHHHHHHHCCCCEEEEhHHHHcCCCCHHHHHHHH
Confidence            77777765     35678999999988888999  6799999999999999999999999999999887655555543

>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Putative flavin oxidoreducatase TM0096
species: Thermotoga maritima [TaxId: 2336]

Probab=99.30  E-value=1.7e-11  Score=111.26  Aligned_cols=161  Identities=21%  Similarity=0.271  Sum_probs=111.6

Q ss_pred             ccceeeecCCccccCCCH----HHHHHHHHcCCcEEEecc---cccchhhhcCCCCCCCChHHHHHH----HhhcCcceE
Q 037779           28 VGLAQMLRGGVIMDVVTP----EQARIAEEAGACAVMALE---RVPADIRAQGGVARMSDPQLIKQI----KSSVTIPVM   96 (310)
Q Consensus        28 ~~~~~~l~~g~i~~~~~~----~~a~~~~~~Ga~~I~~l~---~~~~d~r~~~G~~~~~~~~~i~~i----~~~~~lPv~   96 (310)
                      .|+..-|-|      .+|    +.|+ +.+.|+++| +||   |.++-.+...|+.++++++.+.++    ++.+++||.
T Consensus        55 ~p~~~Ql~g------~~p~~~~~aa~-~~~~~~~~I-dlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvs  126 (305)
T d1vhna_          55 RNVAVQIFG------SEPNELSEAAR-ILSEKYKWI-DLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFS  126 (305)
T ss_dssp             TTEEEEEEC------SCHHHHHHHHH-HHTTTCSEE-EEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEE
T ss_pred             CCeEEEEec------cchhhhhhhhh-hhhhheeee-eEEEEecchhhcccccceeeccCHHHHHHHhhhhhhhcccccc
Confidence            455555555      445    3354 455699998 999   555555555688899999987654    556799999


Q ss_pred             eeccccchHHHHHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHH
Q 037779           97 AKARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVE  176 (310)
Q Consensus        97 ~kd~i~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~  176 (310)
                      +|.+++..                 .. ..                      .+-+....+.|++.+.+||+...-    
T Consensus       127 vK~RlG~d-----------------~~-~~----------------------~~~~~~l~~~G~~~itvH~Rt~~q----  162 (305)
T d1vhna_         127 VKTRLGWE-----------------KN-EV----------------------EEIYRILVEEGVDEVFIHTRTVVQ----  162 (305)
T ss_dssp             EEEESCSS-----------------SC-CH----------------------HHHHHHHHHTTCCEEEEESSCTTT----
T ss_pred             cccccCcc-----------------cc-hh----------------------hHHHHHHHHhCCcEEEechhhhhh----
Confidence            99998731                 00 11                      122344556799999999773211    


Q ss_pred             HHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEcccc
Q 037779          177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGV  255 (310)
Q Consensus       177 ~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai  255 (310)
                                     .+.           ...+|+.++.+++  ++||  |++|||.|++|+.++++ .|+||||+|++.
T Consensus       163 ---------------~~~-----------~~a~~~~i~~~~~--~ipv--i~NGdI~s~~d~~~~l~~tg~dgVMiGRga  212 (305)
T d1vhna_         163 ---------------SFT-----------GRAEWKALSVLEK--RIPT--FVSGDIFTPEDAKRALEESGCDGLLVARGA  212 (305)
T ss_dssp             ---------------TTS-----------SCCCGGGGGGSCC--SSCE--EEESSCCSHHHHHHHHHHHCCSEEEESGGG
T ss_pred             ---------------ccc-----------cchhhhHHHhhhh--hhhh--hcccccccHHHHHHHHHhcCCCeEehhHHH
Confidence                           110           1335666666655  6899  67999999999999986 699999999999


Q ss_pred             ccCCCHHHHHHHHHH
Q 037779          256 FKSGDPVRRARAIVQ  270 (310)
Q Consensus       256 ~~~~dp~~~~~~~~~  270 (310)
                      +..++.+..++++..
T Consensus       213 l~nP~if~~i~~~l~  227 (305)
T d1vhna_         213 IGRPWIFKQIKDFLR  227 (305)
T ss_dssp             TTCTTHHHHHHHHHH
T ss_pred             HHhhhHhhhhhhhhc
Confidence            999988776655443

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.28  E-value=4.4e-11  Score=103.26  Aligned_cols=189  Identities=13%  Similarity=0.111  Sum_probs=125.5

Q ss_pred             HHHHHHHHcCCcEEEe-c---ccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccch-HHHHHHHHcCCCeeee
Q 037779           46 EQARIAEEAGACAVMA-L---ERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHF-VEAQILEAIGVDYVDE  120 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~-l---~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~-~~~~~~~~aGad~v~~  120 (310)
                      +.++.+.++|+++++. +   +++|. . .+       .++.++.+++.+++|+-++..+.+. ..++.+.++|++.|..
T Consensus        18 ~~i~~~~~~g~d~iHiDimDg~Fvpn-~-s~-------g~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~ga~~i~~   88 (217)
T d2flia1          18 SELARIEETDAEYVHIDIMDGQFVPN-I-SF-------GADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTI   88 (217)
T ss_dssp             HHHHHHHHTTCCEEEEEEEBSSSSSC-B-CB-------CHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHcCCCEEEEEcccCcCCCc-c-cc-------CHHHHHHHHhcCCCceEeEEEecCHHHHHHHHHHcCCcEEEe
Confidence            6899999999999843 3   23332 1 22       2789999999999999888777543 3567888899999874


Q ss_pred             c--CCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEe--cCCCCCchHHHHHHHHHhhcceecccccCc
Q 037779          121 S--EVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTK--GEAGTGNIVEAVRHVRSVMGDIRVLRNMDD  196 (310)
Q Consensus       121 ~--~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~--g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  196 (310)
                      +  ....+.++++.+++++....+.+...|.-+...-.-.-.|+|.+.  .++++|-                  +. .+
T Consensus        89 H~E~~~~~~~~i~~i~~~g~~~Gial~p~T~~~~~~~~l~~id~vliM~V~pG~~Gq------------------~f-~~  149 (217)
T d2flia1          89 HTESTRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQ------------------AF-IP  149 (217)
T ss_dssp             EGGGCSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTTCSEEEEESSCTTCSSC------------------CC-CG
T ss_pred             ccccccCHHHHHHHHHhcCCeEEEEecCCcchhHHHhHHhhcCEEEEEEEcCccccc------------------cc-ch
Confidence            3  223467788888776655555555555443333333356776543  2333331                  00 00


Q ss_pred             hhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779          197 DEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV  272 (310)
Q Consensus       197 d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~  272 (310)
                      ..       +..-.++.+.+.+. .++++  .+.||| +.+++..+.++|||.+++||+|++++||.+.+++|++.+
T Consensus       150 ~~-------~~ki~~l~~~~~~~~~~~~I--~vDGGI-n~~~i~~l~~aGad~~V~Gsaif~~~d~~~~i~~lr~~i  216 (217)
T d2flia1         150 EC-------LEKVATVAKWRDEKGLSFDI--EVDGGV-DNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL  216 (217)
T ss_dssp             GG-------HHHHHHHHHHHHHTTCCCEE--EEESSC-CTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHHHH
T ss_pred             hh-------HHHHHHHHHHHHhcCCCeEE--EEeCCC-CHHHHHHHHHCCCCEEEEchHHhCCCCHHHHHHHHHHhh
Confidence            00       00012233333332 34566  568999 589999999999999999999999999999999999876

>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.26  E-value=6.3e-11  Score=104.83  Aligned_cols=181  Identities=17%  Similarity=0.241  Sum_probs=118.7

Q ss_pred             HHHHHHHHcCCcEEEecc-ccc-------c----hhhhc-CCCCCCCChHHHHHHHhhcCcceEeeccccc--hHHHHHH
Q 037779           46 EQARIAEEAGACAVMALE-RVP-------A----DIRAQ-GGVARMSDPQLIKQIKSSVTIPVMAKARIGH--FVEAQIL  110 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~-------~----d~r~~-~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~--~~~~~~~  110 (310)
                      ++++.+.++|++.| -+. |..       +    ..|+. .|......++.++++++...+|++.......  ...++.+
T Consensus        35 ~~l~~l~~~G~Dii-ElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~n~~~~~~~~~~  113 (261)
T d1rd5a_          35 EALRLLDGCGADVI-ELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIMFRSLAKM  113 (261)
T ss_dssp             HHHHHHHHTTCSSE-EEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEECCSHHHHSCCTHHH
T ss_pred             HHHHHHHHcCCCEE-EECCCCCCcCcCCcceeeeeeeccccCcchhhhhhhhhcccccccCceeeeeeecchhhHHHHHH
Confidence            77999999999987 332 111       1    01112 2444444566788888888899987655431  1124567


Q ss_pred             HHcCCCeeeecCCC--ChhHHHHHHHhcCCCCcEEeecCCHH-HHHHHHHhCCCEEEEecC-CCCCchHHHHHHHHHhhc
Q 037779          111 EAIGVDYVDESEVL--TPADEENHINKHNFRVPFVCGCRNLG-ESLRRIREGAAMIRTKGE-AGTGNIVEAVRHVRSVMG  186 (310)
Q Consensus       111 ~~aGad~v~~~~~~--~~~~~~~~~~~~~~~l~v~~~v~t~~-ea~~a~~~Gad~I~v~g~-~~~~~~~~~~~~~~~~~~  186 (310)
                      .++|+|++++++..  ...++.+.+++++.....++..+|.+ .+++..+..-.+|..... +-||..            
T Consensus       114 ~~~GvdG~IipDlp~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~a~gFvY~vs~~GvTG~~------------  181 (261)
T d1rd5a_         114 KEAGVHGLIVPDLPYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPR------------  181 (261)
T ss_dssp             HHTTCCEEECTTCBTTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHHHHCCSCEEEECSSCCBCTT------------
T ss_pred             HhcCceeeeecCccHHHHHHHHHHHhccccceEEEeccCCchhHHHHHHhcCcchhhhhhccCccccc------------
Confidence            88999999977652  23345666667777766666655544 555556665567654322 122210            


Q ss_pred             ceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          187 DIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       187 ~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                           ....           ....+.++++++..++||  ++..||++++|++++.+.|||||+|||+|++
T Consensus       182 -----~~~~-----------~~~~~~i~~ik~~t~~Pi--~vGFGI~~~e~v~~~~~~gaDGvIVGSaiv~  234 (261)
T d1rd5a_         182 -----ANVN-----------PRVESLIQEVKKVTNKPV--AVGFGISKPEHVKQIAQWGADGVIIGSAMVR  234 (261)
T ss_dssp             -----SCBC-----------THHHHHHHHHHHHCSSCE--EEESCCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred             -----ccch-----------hHHHHHHHHhhhccCCCe--EEEcCCCCHHHHHHHHhcCCCEEEECHHHHH
Confidence                 0000           113567788888888999  5699999999999999999999999999985

>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.24  E-value=2e-10  Score=101.95  Aligned_cols=180  Identities=20%  Similarity=0.204  Sum_probs=118.4

Q ss_pred             HHHHHHHHcCCcEEEecc-ccc-------c----hhhhc-CCCCCCCChHHHHHHHhhc-CcceEeecccc------chH
Q 037779           46 EQARIAEEAGACAVMALE-RVP-------A----DIRAQ-GGVARMSDPQLIKQIKSSV-TIPVMAKARIG------HFV  105 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~-------~----d~r~~-~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~------~~~  105 (310)
                      +.++.+.++|++.| -+. |..       +    ..++. .|......++.++++|+.. ++|++.....+      ...
T Consensus        35 ~~~~~l~~~GaDii-ElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~~~~~~~r~~~~~~pivlm~Y~N~i~~~G~~~  113 (267)
T d1qopa_          35 KIIDTLIDAGADAL-ELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDA  113 (267)
T ss_dssp             HHHHHHHHTTCSSE-EEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCCEE-EECCCCCcccccchHHHhhhhhcccccchhhhhhhhhhhhcccccccceEEEeeccchhhcCchH
Confidence            77999999999987 332 111       1    11111 1433333356677778774 78998765432      235


Q ss_pred             HHHHHHHcCCCeeeecCCCChh---HHHHHHHhcCCCCcEEeecCCHH-HHHHHHHhCCCEEEEecC-CCCCchHHHHHH
Q 037779          106 EAQILEAIGVDYVDESEVLTPA---DEENHINKHNFRVPFVCGCRNLG-ESLRRIREGAAMIRTKGE-AGTGNIVEAVRH  180 (310)
Q Consensus       106 ~~~~~~~aGad~v~~~~~~~~~---~~~~~~~~~~~~l~v~~~v~t~~-ea~~a~~~Gad~I~v~g~-~~~~~~~~~~~~  180 (310)
                      +++.+.++|++++++++. +++   ++.+.+++++.....++..+|.+ -+.+..+..-.+|..-.. +-||.-      
T Consensus       114 f~~~~~~~Gv~GliipDl-P~ee~~~~~~~~~~~~l~~I~lvaPtt~~~Ri~~i~~~a~gFiY~vs~~GvTG~~------  186 (267)
T d1qopa_         114 FYARCEQVGVDSVLVADV-PVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLLSRSGVTGAE------  186 (267)
T ss_dssp             HHHHHHHHTCCEEEETTC-CGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEEESSSSCCCSS------
T ss_pred             HHHHHHhcCCCceeccch-hhhhhHHHHHhhhccCceEEEEecccccHHHHHHHHhhCchhhhhhcccccCCcc------
Confidence            678899999999998765 333   45555566777655555555555 455666666667753322 222210      


Q ss_pred             HHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       181 ~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                                 ...           ...-.+.++.+++..++|+  ++..||++++|+.++++.|||||+|||+|.+
T Consensus       187 -----------~~~-----------~~~~~~~i~~ik~~t~~Pv--~vGFGI~~~e~v~~~~~~~ADGvIVGSAivk  239 (267)
T d1qopa_         187 -----------NRG-----------ALPLHHLIEKLKEYHAAPA--LQGFGISSPEQVSAAVRAGAAGAISGSAIVK  239 (267)
T ss_dssp             -----------SCC-------------CCHHHHHHHHHTTCCCE--EEESSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred             -----------ccc-----------chhHHHHHHHHhhhccCCc--eeecccCCHHHHHHHHhcCCCEEEECHHHHH
Confidence                       000           1123678888888889999  5699999999999999999999999999998

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.22  E-value=1.3e-10  Score=98.93  Aligned_cols=170  Identities=16%  Similarity=0.218  Sum_probs=116.2

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc--CcceEeeccccchHHHHHHHHcCCCeeeecCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV--TIPVMAKARIGHFVEAQILEAIGVDYVDESEV  123 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~--~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~  123 (310)
                      ..++.+.++|...+ .+    | .|.      ....+.++++++..  ++-+-+. -+.+.++++.+.++||+++..+. 
T Consensus        25 ~~~~al~~~Gi~~i-Ei----t-lr~------p~a~~~i~~l~~~~~~~~~vGaG-TV~~~~~~~~a~~aGa~fivsP~-   90 (202)
T d1wa3a1          25 EKALAVFEGGVHLI-EI----T-FTV------PDADTVIKELSFLKEKGAIIGAG-TVTSVEQCRKAVESGAEFIVSPH-   90 (202)
T ss_dssp             HHHHHHHHTTCCEE-EE----E-TTS------TTHHHHHHHTHHHHHTTCEEEEE-SCCSHHHHHHHHHHTCSEEECSS-
T ss_pred             HHHHHHHHcCCCEE-EE----e-cCC------ccHHHHHHHHHHhcCCCcEEEec-ccccHHHHHHHHhhcccEEeCCC-
Confidence            67999999999987 22    0 110      01145666666432  3323222 23345788999999999997443 


Q ss_pred             CChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779          124 LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA  203 (310)
Q Consensus       124 ~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  203 (310)
                      . ..++.+...+  .+++++.++.|+.|+..+.+.|++++++...    .   .                          
T Consensus        91 ~-~~~v~~~~~~--~~i~~iPGv~TpsEi~~A~~~G~~~lK~fPa----~---~--------------------------  134 (202)
T d1wa3a1          91 L-DEEISQFCKE--KGVFYMPGVMTPTELVKAMKLGHTILKLFPG----E---V--------------------------  134 (202)
T ss_dssp             C-CHHHHHHHHH--HTCEEECEECSHHHHHHHHHTTCCEEEETTH----H---H--------------------------
T ss_pred             C-cHHHHHHHHh--cCCceeCCcCcHHHHHHHHHCCCCEEEecch----h---h--------------------------
Confidence            2 3567777765  3589999999999999999999999998621    0   0                          


Q ss_pred             ccCCCcHHHHHHHHh-cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC--HHHHHHHHHHHH
Q 037779          204 KNIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD--PVRRARAIVQAV  272 (310)
Q Consensus       204 ~~~~~~~~l~~~i~~-~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d--p~~~~~~~~~~~  272 (310)
                        .+  ...++.++. ..++|+  ++.||| +++++.+++++|+.+|.+||+|++.++  ..+.++++.+.+
T Consensus       135 --~G--~~~lk~l~~p~p~i~~--iptGGI-~~~n~~~~l~aga~avg~Gs~l~~~~~~~i~~~a~~~~~~~  199 (202)
T d1wa3a1         135 --VG--PQFVKAMKGPFPNVKF--VPTGGV-NLDNVCEWFKAGVLAVGVGSALVKGTPDEVREKAKAFVEKI  199 (202)
T ss_dssp             --HH--HHHHHHHHTTCTTCEE--EEBSSC-CTTTHHHHHHHTCSCEEECHHHHCSCHHHHHHHHHHHHHHH
T ss_pred             --cC--HHHHHHHhCcccCCcE--EeeCCC-CHHHHHHHHHCCCeEEEEchhhcCCCHHHHHHHHHHHHHHH
Confidence              01  134455544 246788  678999 699999999999999999999998632  234555555544

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=99.20  E-value=1.3e-10  Score=106.18  Aligned_cols=181  Identities=17%  Similarity=0.228  Sum_probs=114.5

Q ss_pred             CccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccc--cchHHHHHHHHcC
Q 037779           37 GVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARI--GHFVEAQILEAIG  114 (310)
Q Consensus        37 g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i--~~~~~~~~~~~aG  114 (310)
                      +.|..+.++++|..+.++|.-.+. -+..+.+..          .+.++.+++ ...++.....+  ...+.++.+.++|
T Consensus        43 a~MdtV~~~~mA~als~~GGlGvi-~r~~~~e~~----------~~~i~~vk~-~~~~v~~~vgv~~~~~e~~~~li~ag  110 (330)
T d1vrda1          43 AAMDTVTEAALAKALAREGGIGII-HKNLTPDEQ----------ARQVSIVKK-TRLLVGAAVGTSPETMERVEKLVKAG  110 (330)
T ss_dssp             CCCTTTCSHHHHHHHHTTTCEEEE-CSSSCHHHH----------HHHHHHHHT-CCBCCEEEECSSTTHHHHHHHHHHTT
T ss_pred             CCCCCcCCHHHHHHHHHCCCeEEe-ecccchhhh----------HHHHHHHhh-hccEEEEEEecCHHHHHHHHHHHHCC
Confidence            345566778999999999988762 111111110          223334432 23333222222  2346778889999


Q ss_pred             CCeeeec-CCCChh---HHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEe-cCC--CCCchHHHHHHHHHhhc
Q 037779          115 VDYVDES-EVLTPA---DEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTK-GEA--GTGNIVEAVRHVRSVMG  186 (310)
Q Consensus       115 ad~v~~~-~~~~~~---~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~-g~~--~~~~~~~~~~~~~~~~~  186 (310)
                      +|.+.++ ..-.+.   +.++.++.+.+++++++. +.|.+-++...+.|||+|.+. |+.  +++..            
T Consensus       111 vd~ivId~A~G~~~~~~~~ik~ik~~~~~~~viaGnV~t~~~a~~l~~~GaD~v~VGig~Gs~ctt~~------------  178 (330)
T d1vrda1         111 VDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRV------------  178 (330)
T ss_dssp             CSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEECSSCSTTCHHHH------------
T ss_pred             CCEEEEecCCCCchhHHHHHHHHHHhCCCCCEEeechhHHHHHHHHHHcCCCEEeeccccCccccccc------------
Confidence            9997632 222233   445556666677887775 889999999999999999985 321  22110            


Q ss_pred             ceecccccCchhHHhhhccCCC----cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          187 DIRVLRNMDDDEVFTFAKNIAA----PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       187 ~~~~l~~~~~d~~~~~~~~~~~----~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                          ..            +...    .........+...+||  ||.|||.++.++.+++.+|||+|++||.|..++
T Consensus       179 ----~~------------G~g~p~~sai~~~~~~~~~~~vpv--IAdGGi~~~gdiakAla~GAd~Vm~Gs~fa~~~  237 (330)
T d1vrda1         179 ----VA------------GVGVPQLTAVMECSEVARKYDVPI--IADGGIRYSGDIVKALAAGAESVMVGSIFAGTE  237 (330)
T ss_dssp             ----HH------------CCCCCHHHHHHHHHHHHHTTTCCE--EEESCCCSHHHHHHHHHTTCSEEEESHHHHTBT
T ss_pred             ----ee------------ccccccchhHHHHHHHHHhcCceE--EecCCcccCCchheeeeccCceeeecchheeec
Confidence                00            1111    1223333444457899  789999999999999999999999999998854

>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.20  E-value=4.6e-10  Score=96.95  Aligned_cols=189  Identities=14%  Similarity=0.147  Sum_probs=129.1

Q ss_pred             HHHHHHHHHcCCcEEE-ec---ccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccch-HHHHHHHHcCCCeee
Q 037779           45 PEQARIAEEAGACAVM-AL---ERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHF-VEAQILEAIGVDYVD  119 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~-~l---~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~-~~~~~~~~aGad~v~  119 (310)
                      .+.++.+.++|+++++ ++   +++|. . .++       ++.++.+++.++.|+-+.-.+... ..++.+..+|++.|.
T Consensus        17 ~~ei~~l~~~~~d~iHiDimDg~Fvpn-~-t~~-------~~~i~~i~~~~~~~~dvHLMv~~p~~~i~~~~~~g~~~I~   87 (220)
T d1h1ya_          17 AAEADRMVRLGADWLHMDIMDGHFVPN-L-TIG-------APVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFT   87 (220)
T ss_dssp             HHHHHHHHHTTCSEEEEEEEBSSSSSC-B-CBC-------HHHHHHHHTTCCSEEEEEEESSCGGGGHHHHHHHTCSEEE
T ss_pred             HHHHHHHHHcCCCEEEEeeecCccccc-c-ccC-------chhhhhhhhhcchhhhhHHHhcchhhhhHHhhhcccceee
Confidence            3778899999999973 22   24443 1 232       889999999999999887766533 456778889999987


Q ss_pred             ec-CC--CChhHHHHHHHhcCCCCcEEeecCCHH-HHHHHHHh--CCCEEEEe--cCCCCCchHHHHHHHHHhhcceecc
Q 037779          120 ES-EV--LTPADEENHINKHNFRVPFVCGCRNLG-ESLRRIRE--GAAMIRTK--GEAGTGNIVEAVRHVRSVMGDIRVL  191 (310)
Q Consensus       120 ~~-~~--~~~~~~~~~~~~~~~~l~v~~~v~t~~-ea~~a~~~--Gad~I~v~--g~~~~~~~~~~~~~~~~~~~~~~~l  191 (310)
                      .+ +.  .+...++..+++.+....+....+|.- +....+..  ..|+|.+.  .++++|-                  
T Consensus        88 ~H~E~~~~~~~~~i~~i~~~g~~~Glal~p~t~~~~~~~~l~~~~~~d~vlim~v~PG~~GQ------------------  149 (220)
T d1h1ya_          88 FHIEVSRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQ------------------  149 (220)
T ss_dssp             EEGGGCTTTHHHHHHHHHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSC------------------
T ss_pred             ecccccchhHHHHHHHHHHcCCCcceeeccccchhHHHHHHhcccccceEEEEecCCCCccc------------------
Confidence            43 22  234566777777665555555555533 44444442  35777554  3344431                  


Q ss_pred             cccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 037779          192 RNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ  270 (310)
Q Consensus       192 ~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~  270 (310)
                       .+.           ....+.++.+++. .++++  .+.||| +.+++..+.++|||.+++||+|++++||.+.++++++
T Consensus       150 -~f~-----------~~~l~kI~~l~~~~~~~~I--~VDGGI-n~~~i~~l~~aGad~~V~GS~if~~~d~~~~i~~lr~  214 (220)
T d1h1ya_         150 -KFM-----------PEMMEKVRALRKKYPSLDI--EVDGGL-GPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRK  214 (220)
T ss_dssp             -CCC-----------GGGHHHHHHHHHHCTTSEE--EEESSC-STTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHH
T ss_pred             -ccc-----------hhhhHHHHHHHhcCCCceE--EEEecC-CHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHH
Confidence             000           1134445555553 45666  458999 5899999999999999999999999999999999999


Q ss_pred             HHHcC
Q 037779          271 AVTNY  275 (310)
Q Consensus       271 ~~~~~  275 (310)
                      .++..
T Consensus       215 ~~~~a  219 (220)
T d1h1ya_         215 SVEGS  219 (220)
T ss_dssp             HHHHC
T ss_pred             HHHhc
Confidence            98753

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.15  E-value=7.4e-10  Score=102.87  Aligned_cols=181  Identities=15%  Similarity=0.178  Sum_probs=117.7

Q ss_pred             CccccCCCHHHHHHHHHcCCcEEEecc-cccchhhhcCCCCCCCChHHHHHHHhhcCcceEeec-----------ccc--
Q 037779           37 GVIMDVVTPEQARIAEEAGACAVMALE-RVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKA-----------RIG--  102 (310)
Q Consensus        37 g~i~~~~~~~~a~~~~~~Ga~~I~~l~-~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd-----------~i~--  102 (310)
                      ..|..+.++++|..+.++|.-++  |+ ..+.+..          .+.++++++..+.|...++           .+.  
T Consensus        52 ApMdtVt~~~mA~als~~GGLGv--Lhr~~~~e~~----------~~ev~~v~~~~~~p~~~~~~~~~l~v~aavg~~~~  119 (378)
T d1jr1a1          52 SPMDTVTEAGMAIAMALTGGIGF--IHHNCTPEFQ----------ANEVRKVKKYEQYPLASKDAKKQLLCGAAIGTHED  119 (378)
T ss_dssp             CCCTTTCSHHHHHHHHHHTCEEE--ECCSSCHHHH----------HHHHHHHHTSCCCTTCCBCTTSCBCCEEEECSSTH
T ss_pred             CCCCCcCCHHHHHHHHHCCCeeE--EcCCCCHHHH----------HHHHheehhhhhCcccccccccCEEEEEEeccCHH
Confidence            34556677899999999998886  32 1111110          3456666666555543322           111  


Q ss_pred             chHHHHHHHHcCCCeeeec--CCC--ChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEe-cCC--CCCch
Q 037779          103 HFVEAQILEAIGVDYVDES--EVL--TPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTK-GEA--GTGNI  174 (310)
Q Consensus       103 ~~~~~~~~~~aGad~v~~~--~~~--~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~-g~~--~~~~~  174 (310)
                      ....++.+.++|++.+.++  ...  ...+.++.++++.+++++++ .+.|.+.++...+.|||.|++. |+.  +++. 
T Consensus       120 ~~~~~~~l~~agv~vi~id~a~g~~~~~~~~i~~ik~~~~~~~iIaGnVaT~e~a~~L~~aGAD~VkVGiG~Gs~ctTr-  198 (378)
T d1jr1a1         120 DKYRLDLLALAGVDVVVLDSSQGNSIFQINMIKYMKEKYPNLQVIGGNVVTAAQAKNLIDAGVDALRVGMGCGSICITQ-  198 (378)
T ss_dssp             HHHHHHHHHHHTCCEEEECCSSCCSHHHHHHHHHHHHHSTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHH-
T ss_pred             HHHHHHHHHhhccceEeeeccCccchhhHHHHHHHHHHCCCCceeecccccHHHHHHHHHhCCCEEeeccccccccccc-
Confidence            1235677788999998732  222  23355566666667777777 4899999999999999999986 332  2211 


Q ss_pred             HHHHHHHHHhhcceecccccCchhHHhhhccCCCc-HH---HHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEE
Q 037779          175 VEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAP-YD---LVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVF  250 (310)
Q Consensus       175 ~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~-~~---l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~  250 (310)
                                     ...            +.+.| ..   ......+...+||  ||.|||.++.|+.+++.+|||+|+
T Consensus       199 ---------------~~t------------GvG~pq~sai~~~~~~a~~~~vpI--IADGGi~~~gdiakAla~GAd~VM  249 (378)
T d1jr1a1         199 ---------------EVL------------ACGRPQATAVYKVSEYARRFGVPV--IADGGIQNVGHIAKALALGASTVM  249 (378)
T ss_dssp             ---------------HHH------------CCCCCHHHHHHHHHHHHGGGTCCE--EEESCCCSHHHHHHHHHTTCSEEE
T ss_pred             ---------------ccc------------ccCcccchhhhHHHHhhcccCCce--ecccccccCCceeeEEEeecceee
Confidence                           000            11111 11   2223333357899  789999999999999999999999


Q ss_pred             EccccccCC
Q 037779          251 VGSGVFKSG  259 (310)
Q Consensus       251 VGsai~~~~  259 (310)
                      +||.|..++
T Consensus       250 mGs~fAgt~  258 (378)
T d1jr1a1         250 MGSLLAATT  258 (378)
T ss_dssp             ESTTTTTBT
T ss_pred             ecceeeeee
Confidence            999999864

>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Thermoproteus tenax [TaxId: 2271]

Probab=99.15  E-value=5.4e-10  Score=96.85  Aligned_cols=165  Identities=21%  Similarity=0.284  Sum_probs=112.9

Q ss_pred             HHHHHHhhcCcceEeeccccc-------hHHHHHHHHcCCCeee-ec-CC-CChhHHHHHHHh-cCCCCcEEeecCCHHH
Q 037779           83 LIKQIKSSVTIPVMAKARIGH-------FVEAQILEAIGVDYVD-ES-EV-LTPADEENHINK-HNFRVPFVCGCRNLGE  151 (310)
Q Consensus        83 ~i~~i~~~~~lPv~~kd~i~~-------~~~~~~~~~aGad~v~-~~-~~-~~~~~~~~~~~~-~~~~l~v~~~v~t~~e  151 (310)
                      .+..+++..++++..++.-.+       ...++.+.++|+++++ .+ +- ....+..+.+.+ ...++.+++.+.+.++
T Consensus        47 ~l~~~~~~~~i~v~aQn~~~~~~ga~TG~is~~~l~~~g~~~viigHsErR~~~~e~~~~~~~~~~~gl~~ivcvge~~~  126 (226)
T d1w0ma_          47 ELGLVSQSVDIPVYAQGADVEAGGAHTAHVSLENIKEAGGSGVILNHSEAPLKLNDLARLVAKAKSLGLDVVVCAPDPRT  126 (226)
T ss_dssp             GHHHHHTTCSSCBEESCCSBSSCSSCTTCCBHHHHHHHTCCEEEECCTTSCCBHHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             hHHHHhhcccceecccccccccccccceeeeHhhhcccccceEEeechhhhhhccchHHHHHHHHHcCCEEEEecCchHH
Confidence            456667777888888654211       1246788999999998 33 21 222333333333 3357888889999999


Q ss_pred             HHHHHHhCCCEEEEecC--CCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEc
Q 037779          152 SLRRIREGAAMIRTKGE--AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFA  228 (310)
Q Consensus       152 a~~a~~~Gad~I~v~g~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia  228 (310)
                      ..++.+.+.++|...+.  .+++...                .....+          .-...++.+++. .++||  ++
T Consensus       127 ~~~~~~~~~~iIayep~waIGtg~~~----------------~~~~~~----------~i~~~i~~~~~~~~~i~v--ly  178 (226)
T d1w0ma_         127 SLAAAALGPHAVAVEPPELIGTGRAV----------------SRYKPE----------AIVETVGLVSRHFPEVSV--IT  178 (226)
T ss_dssp             HHHHHHTCCSEEEECCGGGTTTSCCH----------------HHHCHH----------HHHHHHHHHHHHCTTSEE--EE
T ss_pred             hhhhhccccceeeecchhhccCCCCC----------------Chhhhh----------HhhhhhhhhhccCCCceE--EE
Confidence            99999999999987633  2333210                000000          012233444443 47898  67


Q ss_pred             cCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcC
Q 037779          229 AGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY  275 (310)
Q Consensus       229 ~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~  275 (310)
                      +|||++.+++..+++.|+|||+|||++++++||+.++.++.+.+.+.
T Consensus       179 gGgV~~~n~~~~~~~~g~dGvLVGsA~l~a~d~~~~i~~l~~~~~~~  225 (226)
T d1w0ma_         179 GAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIVELAKPLSEL  225 (226)
T ss_dssp             ESSCCSHHHHHHHHHTTCSEEEECHHHHTCSSHHHHHHHHHHHHHHC
T ss_pred             ecCcCChHHHHHHhcCCCCEEEechheecCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999988653

>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.13  E-value=3.9e-10  Score=98.85  Aligned_cols=179  Identities=17%  Similarity=0.156  Sum_probs=115.7

Q ss_pred             HHHHHHHHcCCcEEEecc-ccc-------chhh----h-cCCCCCCCChHHHHHHHhhcCcceEeecccc------chHH
Q 037779           46 EQARIAEEAGACAVMALE-RVP-------ADIR----A-QGGVARMSDPQLIKQIKSSVTIPVMAKARIG------HFVE  106 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~-------~d~r----~-~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~------~~~~  106 (310)
                      +.++.+. .|++.| .+. |..       +-.+    + ..|......++.++++|+..++|++.....+      ..+.
T Consensus        23 ~~l~~l~-~g~d~i-EiGiPfSDP~aDGpvIq~A~~rAl~~G~~~~~~~~~~~~~r~~~~~pivlm~Y~N~i~~~G~~~f  100 (248)
T d1geqa_          23 NFLLALD-EYAGAI-ELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNF  100 (248)
T ss_dssp             HHHHHHG-GGBSCE-EEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHH
T ss_pred             HHHHHHH-cCCCEE-EECCCCCCccccCHHHHHhhhHHHhCCccHHHHHHHHHHHhhcCCCcEEEEeccccccccCHHHH
Confidence            6677764 589876 332 111       1111    1 1244334446678889988899998765443      2356


Q ss_pred             HHHHHHcCCCeeeecCCCChhH---HHHHHHhcCCCCcEEeecCCHHH-HHHHHHhCCCEEEEecC-CCCCchHHHHHHH
Q 037779          107 AQILEAIGVDYVDESEVLTPAD---EENHINKHNFRVPFVCGCRNLGE-SLRRIREGAAMIRTKGE-AGTGNIVEAVRHV  181 (310)
Q Consensus       107 ~~~~~~aGad~v~~~~~~~~~~---~~~~~~~~~~~l~v~~~v~t~~e-a~~a~~~Gad~I~v~g~-~~~~~~~~~~~~~  181 (310)
                      ++.+.++|+++++.++. ++++   +.+.+++++.....++..+|.++ +++..+..-.+|..... +-||..       
T Consensus       101 ~~~~~~~Gv~GliipDL-P~eE~~~~~~~~~~~gl~~I~lvaPtt~~~ri~~i~~~s~gFiY~vs~~GvTG~~-------  172 (248)
T d1geqa_         101 LAEAKASGVDGILVVDL-PVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFVYLVSLYGTTGAR-------  172 (248)
T ss_dssp             HHHHHHHTCCEEEETTC-CGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCSSEEEEECCC-------------
T ss_pred             hhhhcccCeeEEeccCC-cHHHHHHHHhhccccCcceEEEecccchhHHHHHHHhcCCCeEEEEecccccccc-------
Confidence            78889999999987765 4443   44555567777666676666554 44555666567754322 122210       


Q ss_pred             HHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          182 RSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       182 ~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                                ..+.           ..-.+.++++++..++|+  ++..||+|++|++++.+.|||||+|||+|++
T Consensus       173 ----------~~~~-----------~~~~~~v~~vk~~t~~Pv--~vGFGI~~~e~v~~~~~~~ADGvIVGSaiv~  225 (248)
T d1geqa_         173 ----------EEIP-----------KTAYDLLRRAKRICRNKV--AVGFGVSKREHVVSLLKEGANGVVVGSALVK  225 (248)
T ss_dssp             -----------CCC-----------HHHHHHHHHHHHHCSSCE--EEESCCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred             ----------hhhh-----------hhHHHHHHHHhhhcccce--eeecccCCHHHHHHHHhcCCCEEEECHHHHH
Confidence                      0000           012567788888888999  5699999999999999999999999999986

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=99.12  E-value=1.6e-09  Score=92.61  Aligned_cols=157  Identities=10%  Similarity=0.110  Sum_probs=113.2

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeeecCC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDESEV  123 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~  123 (310)
                      .+.++++.++|...| -+       ....    ....+.++.+++.. ++.+-+... -+.++++.+.++||+++..+..
T Consensus        29 ~~~~~al~~~Gi~~i-Ei-------tl~~----~~a~~~I~~l~~~~p~~~vGaGTV-~~~~~~~~a~~aGa~FivSP~~   95 (212)
T d1vhca_          29 LPLADTLAKNGLSVA-EI-------TFRS----EAAADAIRLLRANRPDFLIAAGTV-LTAEQVVLAKSSGADFVVTPGL   95 (212)
T ss_dssp             HHHHHHHHHTTCCEE-EE-------ETTS----TTHHHHHHHHHHHCTTCEEEEESC-CSHHHHHHHHHHTCSEEECSSC
T ss_pred             HHHHHHHHHCCCCEE-EE-------eCCC----hhHHHHHHHHHhcCCCceEeeeec-ccHHHHHHHHhhCCcEEECCCC
Confidence            467999999999987 22       1110    11156788887664 444433332 2457899999999999975432


Q ss_pred             CChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779          124 LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA  203 (310)
Q Consensus       124 ~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  203 (310)
                        .+++.+..++  .+++++.++.|+.|+..|.+.|+++++++....-                                
T Consensus        96 --~~~v~~~a~~--~~i~~iPGv~TpsEi~~A~~~G~~~vK~FPA~~~--------------------------------  139 (212)
T d1vhca_          96 --NPKIVKLCQD--LNFPITPGVNNPMAIEIALEMGISAVKFFPAEAS--------------------------------  139 (212)
T ss_dssp             --CHHHHHHHHH--TTCCEECEECSHHHHHHHHHTTCCEEEETTTTTT--------------------------------
T ss_pred             --CHHHHHHHHh--cCCCccCCcCCHHHHHHHHHCCCCEEEEcccccc--------------------------------
Confidence              4577777766  4699999999999999999999999999732110                                


Q ss_pred             ccCCCcHHHHHHHHh-cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          204 KNIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       204 ~~~~~~~~l~~~i~~-~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                          .....++.++. ..++|+  ++.||| +.+++.+++++|+.+++.||.++.
T Consensus       140 ----gG~~~lkal~~p~p~~~~--~ptGGV-~~~N~~~yl~~g~v~~~~Gs~l~~  187 (212)
T d1vhca_         140 ----GGVKMIKALLGPYAQLQI--MPTGGI-GLHNIRDYLAIPNIVACGGSWFVE  187 (212)
T ss_dssp             ----THHHHHHHHHTTTTTCEE--EEBSSC-CTTTHHHHHTSTTBCCEEECGGGC
T ss_pred             ----chHHHHHHHhccccCCeE--EecCCC-CHHHHHHHHhCCCEEEEEChhhCC
Confidence                01233444444 246788  678999 599999999999999999999885

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=2.9e-09  Score=91.03  Aligned_cols=158  Identities=12%  Similarity=0.108  Sum_probs=114.1

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeeecCC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDESEV  123 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~~  123 (310)
                      .+.++++.++|...| -+       ....    ....+.++.+++.. ++-+-+. -+-+.++++.+.++||+++..+..
T Consensus        30 ~~~~~al~~~Gi~~i-Ei-------tl~t----p~a~~~I~~l~~~~p~~~vGaG-TV~~~~~~~~a~~aGa~FivSP~~   96 (213)
T d1wbha1          30 VPMAKALVAGGVRVL-NV-------TLRT----ECAVDAIRAIAKEVPEAIVGAG-TVLNPQQLAEVTEAGAQFAISPGL   96 (213)
T ss_dssp             HHHHHHHHHTTCCEE-EE-------ESCS----TTHHHHHHHHHHHCTTSEEEEE-SCCSHHHHHHHHHHTCSCEEESSC
T ss_pred             HHHHHHHHHCCCCEE-EE-------eCCC----hhHHHHHHHHHHHCCCCeeecc-ccccHHHHHHHHHCCCcEEECCCC
Confidence            478999999999987 22       1110    01166788888764 4433222 223557899999999999975542


Q ss_pred             CChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779          124 LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA  203 (310)
Q Consensus       124 ~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  203 (310)
                        ..++.+..++  .+++++.++.|+.|+..+.+.|+++++++....                                 
T Consensus        97 --~~~v~~~a~~--~~i~~iPGv~TpsEi~~A~~~G~~~vKlFPA~~---------------------------------  139 (213)
T d1wbha1          97 --TEPLLKAATE--GTIPLIPGISTVSELMLGMDYGLKEFKFFPAEA---------------------------------  139 (213)
T ss_dssp             --CHHHHHHHHH--SSSCEEEEESSHHHHHHHHHTTCCEEEETTTTT---------------------------------
T ss_pred             --CHHHHHHHHh--cCCCccCCcCCHHHHHHHHHCCCCEEEeccchh---------------------------------
Confidence              4677777766  459999999999999999999999999973211                                 


Q ss_pred             ccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          204 KNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       204 ~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                         ......++.++.- .++++  ++.||| +++++.+++++|+.++++||.++..
T Consensus       140 ---~Gg~~~lkal~~p~p~~~~--~ptGGV-~~~n~~~yl~~g~v~~~~Gs~l~~~  189 (213)
T d1wbha1         140 ---NGGVKALQAIAGPFSQVRF--CPTGGI-SPANYRDYLALKSVLCIGGSWLVPA  189 (213)
T ss_dssp             ---TTHHHHHHHHHTTCTTCEE--EEBSSC-CTTTHHHHHTSTTBSCEEEGGGSCH
T ss_pred             ---cChHHHHHHhcCcccCCce--eeeCCC-CHHHHHHHHhCCCEEEEEChhhCCh
Confidence               0123344555442 46778  678999 5999999999999999999999863

>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.07  E-value=1.9e-09  Score=93.53  Aligned_cols=184  Identities=17%  Similarity=0.200  Sum_probs=122.2

Q ss_pred             HHHHHHHHcCCcEEE-ec---ccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccch-HHHHHHHHcCCCeeee
Q 037779           46 EQARIAEEAGACAVM-AL---ERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHF-VEAQILEAIGVDYVDE  120 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~-~l---~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~-~~~~~~~~aGad~v~~  120 (310)
                      +.++.+.++|+++++ ++   +++|. . .|       .++.++.+++.+++|+-+.-.+.+. ..++.+..+|++.+..
T Consensus        27 ~~i~~l~~~g~d~iHiDImDG~Fvpn-~-t~-------~~~~v~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~~~i~~   97 (230)
T d1rpxa_          27 EQVKAIEQAGCDWIHVDVMDGRFVPN-I-TI-------GPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSV   97 (230)
T ss_dssp             HHHHHHHHTTCCCEEEEEEBSSSSSC-B-CC-------CHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHcCCCEEEEeCccCCcCCc-c-cc-------ChHHHhhhhhccCceeeeeeeecchhhhHHHHhhcccceeEE
Confidence            678999999999973 22   24443 1 23       2788999999999999888877654 3457788899999874


Q ss_pred             c-C---CCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEe--cCCCCCchHHHHHHHHHhhcceeccccc
Q 037779          121 S-E---VLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTK--GEAGTGNIVEAVRHVRSVMGDIRVLRNM  194 (310)
Q Consensus       121 ~-~---~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~--g~~~~~~~~~~~~~~~~~~~~~~~l~~~  194 (310)
                      + +   ...+.++++.+++++....+.....|.-+...-+-.-.|+|.+.  .++++|-                  .. 
T Consensus        98 H~E~~~~~~~~~~i~~ik~~g~k~Gialnp~T~~~~l~~~l~~vD~VllM~V~PGf~GQ------------------~f-  158 (230)
T d1rpxa_          98 HCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQ------------------SF-  158 (230)
T ss_dssp             ECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTTTTTTCSEEEEESSCTTCSSC------------------CC-
T ss_pred             eccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhhCCEEEEEEecCCcccc------------------hh-
Confidence            3 2   22466778888776655555555555443333233357887554  2333331                  00 


Q ss_pred             CchhHHhhhccCCCcHHHHHH----HHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 037779          195 DDDEVFTFAKNIAAPYDLVMQ----TKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV  269 (310)
Q Consensus       195 ~~d~~~~~~~~~~~~~~l~~~----i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~  269 (310)
                      .           ....+.++.    +.+. .++.+  -+.||| +.+++..+.++|||.+++||+|++++||.+.++.++
T Consensus       159 ~-----------~~~~~kI~~~~~~~~~~~~~~~I--~vDGGI-n~~~i~~l~~~Gad~~V~GS~if~~~d~~~~i~~lk  224 (230)
T d1rpxa_         159 I-----------ESQVKKISDLRKICAERGLNPWI--EVDGGV-GPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIK  224 (230)
T ss_dssp             C-----------TTHHHHHHHHHHHHHHHTCCCEE--EEESSC-CTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHH
T ss_pred             h-----------hhhHHHHHHHHHHHHhcCCceEE--EEECCc-CHHHHHHHHHcCCCEEEEChHHHCCCCHHHHHHHHH
Confidence            0           112222232    3322 34555  468999 589999999999999999999999999998888876


Q ss_pred             HH
Q 037779          270 QA  271 (310)
Q Consensus       270 ~~  271 (310)
                      .+
T Consensus       225 ~~  226 (230)
T d1rpxa_         225 TS  226 (230)
T ss_dssp             TC
T ss_pred             Hh
Confidence            53

>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Thermus thermophilus [TaxId: 274]

Probab=99.06  E-value=2e-09  Score=95.23  Aligned_cols=197  Identities=16%  Similarity=0.144  Sum_probs=124.3

Q ss_pred             HHHHHHHHcCCcEEEecc-ccc-------chh----hhc-CCCCCCCChHHHHHHHhhcCcceEeecccc------chHH
Q 037779           46 EQARIAEEAGACAVMALE-RVP-------ADI----RAQ-GGVARMSDPQLIKQIKSSVTIPVMAKARIG------HFVE  106 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~-------~d~----r~~-~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~------~~~~  106 (310)
                      +.++.+.+ |++.| -+. |..       +-.    |+. .|......++.++++|+..++|++.....+      ...+
T Consensus        34 ~~l~~l~~-gaDii-ElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~pivlm~Y~N~i~~~G~~~F  111 (271)
T d1ujpa_          34 QAVEEVLP-YADLL-EIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWGPERF  111 (271)
T ss_dssp             HHHHHHGG-GCSSE-EEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHHHHCHHHH
T ss_pred             HHHHHHHc-CCCEE-EeCCCCCCcccCCCeeeeeeeeccccccchhhHHHHHHHHhcccCCcEEEEeechhhhhCCchhH
Confidence            56777654 89876 332 111       111    111 244434446678888888899998865543      2346


Q ss_pred             HHHHHHcCCCeeeecCCCChh---HHHHHHHhcCCCCcEEeecCCHHHH-HHHHHhCCCEEEEecC-CCCCchHHHHHHH
Q 037779          107 AQILEAIGVDYVDESEVLTPA---DEENHINKHNFRVPFVCGCRNLGES-LRRIREGAAMIRTKGE-AGTGNIVEAVRHV  181 (310)
Q Consensus       107 ~~~~~~aGad~v~~~~~~~~~---~~~~~~~~~~~~l~v~~~v~t~~ea-~~a~~~Gad~I~v~g~-~~~~~~~~~~~~~  181 (310)
                      ++.+.++|+|++++++. +++   ++...+++++..+..++...|.++- .+..+..-.+|..-+. +-||.-       
T Consensus       112 ~~~~~~aGvdGliipDL-P~ee~~~~~~~~~~~gl~~I~lvsPtT~~eRi~~i~~~s~GFIY~Vs~~GvTG~~-------  183 (271)
T d1ujpa_         112 FGLFKQAGATGVILPDL-PPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATGFVYAVSVTGVTGMR-------  183 (271)
T ss_dssp             HHHHHHHTCCEEECTTC-CGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCSCEEEECC--------------
T ss_pred             hHHHhhcCceeEeccch-hhhhHHHHHHHhhccccceeeccCCCcchHHHHHHHHhCcchhhhhcccCccCcc-------
Confidence            78889999999987765 333   4556666677776555665555554 4444544456653222 112210       


Q ss_pred             HHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc----
Q 037779          182 RSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK----  257 (310)
Q Consensus       182 ~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~----  257 (310)
                                ..+           .....+.++.+++..++|+  ++..||++++++.++  .|||||+|||+|.+    
T Consensus       184 ----------~~~-----------~~~~~~~i~~ik~~t~~Pv--~vGFGIs~~e~v~~~--~~ADGvIVGSAiV~~i~e  238 (271)
T d1ujpa_         184 ----------ERL-----------PEEVKDLVRRIKARTALPV--AVGFGVSGKATAAQA--AVADGVVVGSALVRALEE  238 (271)
T ss_dssp             --------------------------CCHHHHHHHHTTCCSCE--EEESCCCSHHHHHHH--TTSSEEEECHHHHHHHHT
T ss_pred             ----------ccc-----------hHHHHHHHHhhhccccCCe--EEeCCCCCHHHHHHh--CCCCEEEEcHHHHHHHHh
Confidence                      000           0124678888888889999  569999999999875  48999999999986    


Q ss_pred             CCCHHHHHHHHHHHHHcCCC
Q 037779          258 SGDPVRRARAIVQAVTNYSD  277 (310)
Q Consensus       258 ~~dp~~~~~~~~~~~~~~~~  277 (310)
                      +.+....++++.+.++..+.
T Consensus       239 ~~~~~~~~~~i~~~l~~lk~  258 (271)
T d1ujpa_         239 GRSLAPLLQEIRQGLQRLEA  258 (271)
T ss_dssp             TCCHHHHHHHHHHHHBCC--
T ss_pred             CCCHHHHHHHHHHHHHHHhh
Confidence            45667777778777776544

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.06  E-value=3.8e-09  Score=97.47  Aligned_cols=179  Identities=16%  Similarity=0.203  Sum_probs=113.0

Q ss_pred             ccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeecccc--chHHHHHHHHcCCC
Q 037779           40 MDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIG--HFVEAQILEAIGVD  116 (310)
Q Consensus        40 ~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~--~~~~~~~~~~aGad  116 (310)
                      ..+.++++|..+.+.|.-.+.-. +.+.+..          .+..+...+.. .+.+.+-..+.  +++.++.+.++|+|
T Consensus        53 DtV~~~~mA~~ls~~Gglgvlhr-~~~~~e~----------~~~~~~~~~~~~~~~v~aavGv~~~~~er~~~l~~agvd  121 (365)
T d1zfja1          53 DTVTGSKMAIAIARAGGLGVIHK-NMSITEQ----------AEEVRKVKRSEGRLLVAAAVGVTSDTFERAEALFEAGAD  121 (365)
T ss_dssp             TTTCSHHHHHHHHHTTCEEEECC-SSCHHHH----------HHHHHHHHHHTSCBCCEEEECSSTTHHHHHHHHHHHTCS
T ss_pred             CCcCCHHHHHHHHHCCCceEEcC-ccCHHHH----------HHHhhhhhhccCceEEEEEeccCchHHHHHHHHHHcCCC
Confidence            34556899999999998876211 1111110          22333333332 23333332332  34677888899999


Q ss_pred             eeeec--CCC--ChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEe-cC--CCCCchHHHHHHHHHhhcce
Q 037779          117 YVDES--EVL--TPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTK-GE--AGTGNIVEAVRHVRSVMGDI  188 (310)
Q Consensus       117 ~v~~~--~~~--~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~-g~--~~~~~~~~~~~~~~~~~~~~  188 (310)
                      .+.++  ...  ...+..+.++++.+..+++++ |-|.+-++...+.|||+|++. |+  .+++..              
T Consensus       122 ~ivID~A~G~s~~~~~~i~~ik~~~~~~~iIaGNV~T~e~a~~L~~aGaD~VkVGiG~Gs~CTTr~--------------  187 (365)
T d1zfja1         122 AIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIATAEGARALYDAGVDVVKVGIGPGSICTTRV--------------  187 (365)
T ss_dssp             EEEECCSCTTCHHHHHHHHHHHHHCSSSCEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTBCHHH--------------
T ss_pred             EEEEECCcccccchhHHHHHHHhhCCCcceeecccccHHHHHHHHhcCCceEEeeecccccccCcc--------------
Confidence            98743  221  123455666666677777775 899999999999999999886 33  233211              


Q ss_pred             ecccccCchhHHhhhccCCCc-HHHHHHH---HhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          189 RVLRNMDDDEVFTFAKNIAAP-YDLVMQT---KQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       189 ~~l~~~~~d~~~~~~~~~~~~-~~l~~~i---~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                        ..            +++.| ...+..+   .....+||  ||.|||.+..|+.+++.+|||+||+|+.|.++.
T Consensus       188 --~t------------GvGvPq~sai~~~~~~~~~~~~~i--IADGGi~~~GDi~KAla~GAd~VMlG~~lAg~~  246 (365)
T d1zfja1         188 --VA------------GVGVPQVTAIYDAAAVAREYGKTI--IADGGIKYSGDIVKALAAGGNAVMLGSMFAGTD  246 (365)
T ss_dssp             --HT------------CCCCCHHHHHHHHHHHHHHTTCEE--EEESCCCSHHHHHHHHHTTCSEEEESTTTTTBS
T ss_pred             --ee------------eeeccchhHHHHHHHHHHhCCceE--EecCCcCcchhhhhhhhccCCEEEecchhcccc
Confidence              00            12222 1122222   22246788  789999999999999999999999999999865

>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.05  E-value=1.7e-09  Score=93.32  Aligned_cols=188  Identities=13%  Similarity=0.112  Sum_probs=122.5

Q ss_pred             HHHHHHHHcCCcEEE-ec---ccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchH-HHHHHHHcCCCeee
Q 037779           46 EQARIAEEAGACAVM-AL---ERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFV-EAQILEAIGVDYVD  119 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~-~l---~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~-~~~~~~~aGad~v~  119 (310)
                      +..+.+.++|+++++ ++   +++|. . .|       .+..++++++.. ++|+-+.-.+...+ .++.+..+|++.++
T Consensus        19 ~~i~~l~~~~~d~iHiDimDG~Fvpn-~-t~-------g~~~v~~i~~~~~~~~~dvHLMv~~P~~~i~~~~~~~~~~i~   89 (221)
T d1tqxa_          19 EETQRMESLGAEWIHLDVMDMHFVPN-L-SF-------GPPVINNLKKYTKSIFFDVHLMVEYPEKYVPLLKTSNQLTFH   89 (221)
T ss_dssp             HHHHHHHHTTCSEEEEEEEBSSSSSC-B-CC-------CHHHHHHHGGGCSSCEEEEEEESSCGGGGGGGCTTSSEEEEE
T ss_pred             HHHHHHHHcCCCEEEEECccCcCcCc-c-cc-------ChHHHhhhhhcCCchhhhhhHHhhhhhhhhhhhhhcCceeEE
Confidence            678899999999973 22   23332 1 22       278899999874 78998887775433 23555668998887


Q ss_pred             ec-CCCChhHHH---HHHHhcCCCCcEEeecCCHH-HHHHHHH-hCCCEEEEe--cCCCCCchHHHHHHHHHhhcceecc
Q 037779          120 ES-EVLTPADEE---NHINKHNFRVPFVCGCRNLG-ESLRRIR-EGAAMIRTK--GEAGTGNIVEAVRHVRSVMGDIRVL  191 (310)
Q Consensus       120 ~~-~~~~~~~~~---~~~~~~~~~l~v~~~v~t~~-ea~~a~~-~Gad~I~v~--g~~~~~~~~~~~~~~~~~~~~~~~l  191 (310)
                      .+ .........   +.++.++....+.....|.- .....+. ..+|+|.+.  .++++|-                  
T Consensus        90 ~~~~~~~~~~~~~~i~~i~~~g~~~Gial~p~t~~~~~~~~l~~~~~d~vlim~V~pG~~GQ------------------  151 (221)
T d1tqxa_          90 FEALNEDTERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQ------------------  151 (221)
T ss_dssp             GGGGTTCHHHHHHHHHHHHTTTCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSC------------------
T ss_pred             eehhccccchhhHHHHHHHhcCCeEEEeeccccccccchhhcccccccEEEEEeeccccccc------------------
Confidence            43 333344444   44444444445555555544 3444443 457887544  2333331                  


Q ss_pred             cccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHH
Q 037779          192 RNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQ  270 (310)
Q Consensus       192 ~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~  270 (310)
                       .+.           ....+.++.+++. .++.+  -+.||| +.+++..+.++|||.+++||+|++++||.+.++++++
T Consensus       152 -~f~-----------~~~l~KI~~lr~~~~~~~I--~VDGGI-n~~~i~~l~~aGad~iV~GS~if~~~d~~~~i~~Lr~  216 (221)
T d1tqxa_         152 -SFM-----------HDMMGKVSFLRKKYKNLNI--QVDGGL-NIETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRV  216 (221)
T ss_dssp             -CCC-----------GGGHHHHHHHHHHCTTCEE--EEESSC-CHHHHHHHHHHTCCEEEESHHHHTCSSHHHHHHHHHH
T ss_pred             -ccC-----------cchhHHHHHHHHhcCCcce--EEEccc-CHHhHHHHHHcCCCEEEEChHHHCCCCHHHHHHHHHH
Confidence             000           1134444555553 34555  458999 5899999999999999999999999999999999999


Q ss_pred             HHHcC
Q 037779          271 AVTNY  275 (310)
Q Consensus       271 ~~~~~  275 (310)
                      .+++|
T Consensus       217 ~i~k~  221 (221)
T d1tqxa_         217 SVQKY  221 (221)
T ss_dssp             HHHHC
T ss_pred             HHhhC
Confidence            99865

>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

Probab=99.02  E-value=2.7e-09  Score=92.09  Aligned_cols=163  Identities=22%  Similarity=0.233  Sum_probs=109.4

Q ss_pred             hHHHHHHHhhcCcceEeeccccc-------hHHHHHHHHcCCCeee-ec-CCC-ChhHHHHHHHh-cCCCCcEEeecCCH
Q 037779           81 PQLIKQIKSSVTIPVMAKARIGH-------FVEAQILEAIGVDYVD-ES-EVL-TPADEENHINK-HNFRVPFVCGCRNL  149 (310)
Q Consensus        81 ~~~i~~i~~~~~lPv~~kd~i~~-------~~~~~~~~~aGad~v~-~~-~~~-~~~~~~~~~~~-~~~~l~v~~~v~t~  149 (310)
                      .-.+..+.+.+++++..++...+       ...++.+.+.|+++++ ++ +.. ...+..+.+.. ...++.+++.+.+.
T Consensus        47 ~~~L~~~~~~~~i~vgaQn~~~~~~Ga~TGeis~~~l~~~g~~~~iiGHSErr~~~~e~~~~i~~~~~~gl~~i~cv~~~  126 (224)
T d1hg3a_          47 LVDLRMIAESVEIPVFAQHIDPIKPGSHTGHVLPEAVKEAGAVGTLLNHSENRMILADLEAAIRRAEEVGLMTMVCSNNP  126 (224)
T ss_dssp             HHHHHHHHHSCSSCBEESCCCSCCSBSCTTCCCHHHHHHTTCCEEEESCGGGCCBHHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             HHHHHhhccccceeeeecccccccccchhheechhhccccCcceeeeccccccccccchhHHHHHHHHcCCceeechhhH
Confidence            34567777778899988654310       1345678899999987 33 222 22222233322 22468888888899


Q ss_pred             HHHHHHHHhCCCEEEEecC--CCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEE
Q 037779          150 GESLRRIREGAAMIRTKGE--AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVH  226 (310)
Q Consensus       150 ~ea~~a~~~Gad~I~v~g~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~  226 (310)
                      .+.+...+.+.+++.....  .+++..                ...-..+          .-...++.+++. .++||  
T Consensus       127 ~~~~~~~~~~~~iiAyEpvwaIGtg~~----------------~~~~~~~----------~i~~~i~~i~~~~~~v~v--  178 (224)
T d1hg3a_         127 AVSAAVAALNPDYVAVEPPELIGTGIP----------------VSKAKPE----------VITNTVELVKKVNPEVKV--  178 (224)
T ss_dssp             HHHHHHHTTCCSEEEECCTTTTTTSCC----------------TTTSCTH----------HHHHHHHHHHHHCTTSEE--
T ss_pred             HHHHhhhhcccceEEecchHhhccccC----------------CCchhhh----------hhhhhhhhhhhhccccce--
Confidence            9999988999999987532  233310                0000000          012333444442 46788  


Q ss_pred             EccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 037779          227 FAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQA  271 (310)
Q Consensus       227 ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~  271 (310)
                      +++|||++++++..+++.|+|||+|||++++++||.++++++.++
T Consensus       179 lygGsV~~~n~~~~~~~~g~dGvLVGsAsl~a~d~~~~~~~l~~~  223 (224)
T d1hg3a_         179 LCGAGISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAIWDLVSG  223 (224)
T ss_dssp             EEESSCCSHHHHHHHHHTTCSEEEESHHHHTCSSHHHHHHHHHHT
T ss_pred             EEeCCcCCHHHHHHHHhCCCCEEEEcceeecCcCHHHHHHHHHhc
Confidence            679999999999999999999999999999999999999998764

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=99.02  E-value=5.3e-09  Score=97.38  Aligned_cols=126  Identities=17%  Similarity=0.213  Sum_probs=89.2

Q ss_pred             hHHHHHHHHcCCCeeeec--CC--CChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEe-cC--CCCCchH
Q 037779          104 FVEAQILEAIGVDYVDES--EV--LTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTK-GE--AGTGNIV  175 (310)
Q Consensus       104 ~~~~~~~~~aGad~v~~~--~~--~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~-g~--~~~~~~~  175 (310)
                      .+.+..+.++|+|.+.++  ..  ....++++.+++..++++++++ +-|.+.++..++.|||.|+|. |+  .+++.. 
T Consensus       153 ~~ra~~L~~aG~D~ivID~AhG~s~~~~~~i~~ik~~~~~v~vIaGNV~T~e~a~~L~~~GaD~VkVGiGpGs~CtTr~-  231 (388)
T d1eepa_         153 IERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTRI-  231 (388)
T ss_dssp             HHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHTTTCSEEEECSSCSTTSHHHH-
T ss_pred             HHHHHHHHhhccceeeeeccccchHHHHHHHHHHHHHCCCCceeeccccCHHHHHHHHhcCCCeeeecccccccccccc-
Confidence            467788889999998742  22  1234566666666678888885 899999999999999999986 44  233211 


Q ss_pred             HHHHHHHHhhcceecccccCchhHHhhhccCCCc-HHHHHHH---HhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEE
Q 037779          176 EAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAP-YDLVMQT---KQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFV  251 (310)
Q Consensus       176 ~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~-~~l~~~i---~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~V  251 (310)
                                     ..            +.+.| ...+..+   .....+||  ||.|||.++.|+.+++.+|||.||+
T Consensus       232 ---------------~~------------GvG~pq~sai~~~~~~~~~~~vpi--IADGGi~~~Gdi~KAla~GAd~VMl  282 (388)
T d1eepa_         232 ---------------VA------------GVGVPQITAICDVYEACNNTNICI--IADGGIRFSGDVVKAIAAGADSVMI  282 (388)
T ss_dssp             ---------------HH------------CCCCCHHHHHHHHHHHHTTSSCEE--EEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred             ---------------cc------------ccCcchHHHHHHHHHHhccCCceE--EeccccCcCCceeeeEEeccceeec
Confidence                           11            11222 1222222   22246888  7899999999999999999999999


Q ss_pred             ccccccCC
Q 037779          252 GSGVFKSG  259 (310)
Q Consensus       252 Gsai~~~~  259 (310)
                      |+.|.++.
T Consensus       283 G~~lAg~~  290 (388)
T d1eepa_         283 GNLFAGTK  290 (388)
T ss_dssp             CHHHHTBT
T ss_pred             chhhhccc
Confidence            99999865

>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=98.96  E-value=5e-09  Score=90.29  Aligned_cols=183  Identities=15%  Similarity=0.130  Sum_probs=116.3

Q ss_pred             HHHHHHHHcCCcEEEe-c---ccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccch-HHHHHHHHcCCCeeee
Q 037779           46 EQARIAEEAGACAVMA-L---ERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHF-VEAQILEAIGVDYVDE  120 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~-l---~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~-~~~~~~~~aGad~v~~  120 (310)
                      +..+.+.++|+++++. +   +++|.  -.|+       ++.++.++..+++|+-+.-.+.+. ..++.+..+|++.+..
T Consensus        19 ~~i~~l~~~g~d~iHiDImDG~Fvpn--~t~~-------~~~~~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~~~i~~   89 (221)
T d1tqja_          19 EEIKAVDEAGADWIHVDVMDGRFVPN--ITIG-------PLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISV   89 (221)
T ss_dssp             HHHHHHHHTTCSEEEEEEEBSSSSSC--BCBC-------HHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHcCCCEEEEECccCCccCc--cccC-------cHhHHhhhhccCcceeeeEEEeCHHHHHHHHhhccceEEEE
Confidence            6788999999999832 2   24443  1222       778999999999999888777643 3457788899999873


Q ss_pred             c-CC---CChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEe--cCCCCCchHHHHHHHHHhhcceeccccc
Q 037779          121 S-EV---LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTK--GEAGTGNIVEAVRHVRSVMGDIRVLRNM  194 (310)
Q Consensus       121 ~-~~---~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~--g~~~~~~~~~~~~~~~~~~~~~~~l~~~  194 (310)
                      + +.   ....+....++..+....+.....|.-+...-+-.-+|+|.+.  .++++|-                  +. 
T Consensus        90 H~E~~~~~~~~~~~~~i~~~g~~~Gial~p~T~~~~l~~~l~~~d~vlvM~V~pG~~GQ------------------~f-  150 (221)
T d1tqja_          90 HVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQ------------------SF-  150 (221)
T ss_dssp             ECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCC----C------------------CC-
T ss_pred             eeccccChhhHHHHHHHHHCCCCEEEEecCCCcHHHHHHHHhhhcEEEEEEecCCCCCc------------------cc-
Confidence            3 21   1234566666665554555555555433322222356777553  2333221                  00 


Q ss_pred             CchhHHhhhccCCCcHHHHH----HHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 037779          195 DDDEVFTFAKNIAAPYDLVM----QTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV  269 (310)
Q Consensus       195 ~~d~~~~~~~~~~~~~~l~~----~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~  269 (310)
                      .           ....+.++    .+.+. .++++  -+.||| +.+++..+.++|||.+++||+|++++||.+..+.++
T Consensus       151 ~-----------~~~~~ki~~l~~~~~~~~~~~~I--~VDGGI-n~~~i~~l~~~Gad~~V~GS~if~~~d~~~~i~~lr  216 (221)
T d1tqja_         151 I-----------PEVLPKIRALRQMCDERGLDPWI--EVDGGL-KPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVR  216 (221)
T ss_dssp             C-----------GGGHHHHHHHHHHHHHHTCCCEE--EEESSC-CTTTTHHHHHHTCCEEEESHHHHTSSCHHHHHHHHH
T ss_pred             c-----------hhhHHHHHHHHhhhhccccceEE--EEECCc-CHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHH
Confidence            0           01122222    23332 34555  458999 589999999999999999999999999998888776


Q ss_pred             H
Q 037779          270 Q  270 (310)
Q Consensus       270 ~  270 (310)
                      .
T Consensus       217 ~  217 (221)
T d1tqja_         217 N  217 (221)
T ss_dssp             T
T ss_pred             h
Confidence            4

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.93  E-value=5.3e-10  Score=101.24  Aligned_cols=176  Identities=22%  Similarity=0.291  Sum_probs=97.1

Q ss_pred             HHHHHHHHcCCcEEEecc-cccchhhhcC-CCCCCCChHH----HHHHHhhcCcceEeecccc---chHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALE-RVPADIRAQG-GVARMSDPQL----IKQIKSSVTIPVMAKARIG---HFVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~-~~~~d~r~~~-G~~~~~~~~~----i~~i~~~~~lPv~~kd~i~---~~~~~~~~~~aGad  116 (310)
                      +.++.+++.|++++ .+| .||......+ |.....+++.    ++.+++.+++|+++|....   ..+.++.+.++|++
T Consensus       120 ~~a~~~~~~gad~l-elN~scPn~~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~pv~vKl~~~~~~~~~i~~~~~~~g~~  198 (312)
T d1gtea2         120 ELSRKAEASGADAL-ELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLTPNVTDIVSIARAAKEGGAD  198 (312)
T ss_dssp             HHHHHHHHTTCSEE-EEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSSCEEEEECSCSSCHHHHHHHHHHHTCS
T ss_pred             HHHHHhccCCCCeE-eeccCCCCcccccccchhhhhhHHHHHHHHHHHhhccCCceeecccccchhHHHHHHHHHHhccc
Confidence            56888889999998 788 6665432211 2222234544    4556777899999985443   22345677788998


Q ss_pred             eeeecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCc
Q 037779          117 YVDESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDD  196 (310)
Q Consensus       117 ~v~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  196 (310)
                      .+...........   +.......+.. +...          ...+-+..|+    .+                      
T Consensus       199 gi~~~n~~~~~~~---~~~~~~~~~~~-~~~~----------~~~~gg~sG~----~i----------------------  238 (312)
T d1gtea2         199 GVTATNTVSGLMG---LKADGTPWPAV-GAGK----------RTTYGGVSGT----AI----------------------  238 (312)
T ss_dssp             EEEECCCEEECCC---BCTTSCBSSCB-TTTT----------BBCCEEEESG----GG----------------------
T ss_pred             ceEEEeecccccc---ccccccccccc-cccc----------ccccccccCc----Cc----------------------
Confidence            8863221100000   00000000000 0000          0000011111    00                      


Q ss_pred             hhHHhhhccCCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcC
Q 037779          197 DEVFTFAKNIAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY  275 (310)
Q Consensus       197 d~~~~~~~~~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~  275 (310)
                               .....+.++++.+.. ++||  |+.|||.+.+|+.+++.+|||+|.|||+++..+  ...++++.+.+++|
T Consensus       239 ---------~~~al~~v~~~~~~~~~ipI--i~~GGI~~~~d~~~~l~aGA~~Vqv~ta~~~~G--~~~i~~i~~~L~~~  305 (312)
T d1gtea2         239 ---------RPIALRAVTTIARALPGFPI--LATGGIDSAESGLQFLHSGASVLQVCSAVQNQD--FTVIQDYCTGLKAL  305 (312)
T ss_dssp             ---------HHHHHHHHHHHHHHSTTCCE--EEESSCCSHHHHHHHHHTTCSEEEESHHHHTSC--TTHHHHHHHHHHHH
T ss_pred             ---------chhhHHHHHHHHHHcCCCcE--EEEcCCCCHHHHHHHHHcCCCeeEECHhhhccC--hHHHHHHHHHHHHH
Confidence                     011245566666643 5899  678999999999999999999999999998742  33455555555543

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=4.7e-09  Score=88.53  Aligned_cols=163  Identities=13%  Similarity=0.143  Sum_probs=101.9

Q ss_pred             hHHHHHHHhhc-CcceEeeccccc--hHHHHHHHHcCCCeeeecCCCChhHH---HHHHHhcCCCCc-EEeecCCHHHHH
Q 037779           81 PQLIKQIKSSV-TIPVMAKARIGH--FVEAQILEAIGVDYVDESEVLTPADE---ENHINKHNFRVP-FVCGCRNLGESL  153 (310)
Q Consensus        81 ~~~i~~i~~~~-~lPv~~kd~i~~--~~~~~~~~~aGad~v~~~~~~~~~~~---~~~~~~~~~~l~-v~~~v~t~~ea~  153 (310)
                      ++.++++++.. +.++.....+.+  ....+.+.++|||.+..+....+..+   .+.+++.+.... .....++.+...
T Consensus        42 ~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~gad~vtvh~~~g~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  121 (213)
T d1q6oa_          42 VRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICCADINTAKGALDVAKEFNGDVQIELTGYWTWEQAQ  121 (213)
T ss_dssp             THHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHHHTTCEEEEEECSCCCHHHHH
T ss_pred             HHHHHHHHHhcccccceeEEeeccchHHHHHHHHHcCCCEEEEeccCCchHHHHHHHHHHHcCCceecccCCCCCHHHHH
Confidence            57888888764 566665433321  23456778899999885543333333   333333332222 233456777777


Q ss_pred             HHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCC
Q 037779          154 RRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVA  233 (310)
Q Consensus       154 ~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~  233 (310)
                      ...+.+.+.+.++.....+.                  ....         ......+.++..+. ..+++  .+.||+ 
T Consensus       122 ~~~~~~~~~~~~~~~~~~g~------------------~~~~---------~~~~~l~~i~~~~~-~~~~i--~~~gGi-  170 (213)
T d1q6oa_         122 QWRDAGIGQVVYHRSRDAQA------------------AGVA---------WGEADITAIKRLSD-MGFKV--TVTGGL-  170 (213)
T ss_dssp             HHHHTTCCEEEEECCHHHHH------------------TTCC---------CCHHHHHHHHHHHH-TTCEE--EEESSC-
T ss_pred             HHHHhHHHHHHHHHhcccCc------------------CCee---------CCHHHHHHHHHhhc-cCceE--ecCCCc-
Confidence            78888988776541100000                  0000         00011233333333 34566  457998 


Q ss_pred             CHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          234 TPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       234 t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      +++++.++.++|+|.++|||+|++++||.+.+++|++.+++
T Consensus       171 ~~~~~~~~~~~Gad~iVVGr~I~~a~dp~~a~~~~~~~i~~  211 (213)
T d1q6oa_         171 ALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIAE  211 (213)
T ss_dssp             CGGGGGGGTTSCCSEEEESHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHcCCCEEEEChhhcCCCCHHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999875

>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Tritrichomonas foetus [TaxId: 5724]

Probab=98.91  E-value=2e-08  Score=92.56  Aligned_cols=174  Identities=14%  Similarity=0.089  Sum_probs=106.3

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHH-HHHHHhhcC--cceEeeccc-cchHHHHHHHHcCCC
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQL-IKQIKSSVT--IPVMAKARI-GHFVEAQILEAIGVD  116 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~-i~~i~~~~~--lPv~~kd~i-~~~~~~~~~~~aGad  116 (310)
                      .+.++++|..+.+.|.-.+  |+      |..       +++. ...+++...  ..+...... ...+.++.+..+|++
T Consensus        60 TVt~~~mA~~la~~Gglgv--ih------R~~-------~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ag~d  124 (362)
T d1pvna1          60 SVSGEKMAIALAREGGISF--IF------GSQ-------SIESQAAMVHAVKNFRYLVGAGINTRDFRERVPALVEAGAD  124 (362)
T ss_dssp             TTCSHHHHHHHHHTTCEEE--EC------CSS-------CHHHHHHHHHHHHTCCCCCEEEECSSSHHHHHHHHHHHTCS
T ss_pred             CcCCHHHHHHHHHCCCEEE--Ee------ecC-------CHHHHHHHhhhhhhcccccccccchhhhHHHHHHHhhcCce
Confidence            4556799999999887765  31      211       1222 222222222  222211111 223567888999999


Q ss_pred             eeeec--CCCC--hhHHHHHHHh-cCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEe-cC--CCCCchHHHHHHHHHhhcc
Q 037779          117 YVDES--EVLT--PADEENHINK-HNFRVPFVC-GCRNLGESLRRIREGAAMIRTK-GE--AGTGNIVEAVRHVRSVMGD  187 (310)
Q Consensus       117 ~v~~~--~~~~--~~~~~~~~~~-~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~-g~--~~~~~~~~~~~~~~~~~~~  187 (310)
                      .+.+.  +...  ..+.++.+++ ....+++++ .+-|.+-++..++.|+|+|++. |+  .+++..             
T Consensus       125 ~i~IDvAhG~~~~v~~~i~~ir~~~~~~~~IiAGNVaT~e~~~~L~~aGaD~vkVGIG~Gs~CTTr~-------------  191 (362)
T d1pvna1         125 VLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAGNIVDGEGFRYLADAGADFIKIGIGGGSICITRE-------------  191 (362)
T ss_dssp             EEEECCSCCCBHHHHHHHHHHHHHHGGGSCEEEEEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHH-------------
T ss_pred             EEeechhccchhHHHHHHHHHHHhhccceeeecccccCHHHHHHHHHhCCcEEEecccccccccchh-------------
Confidence            98732  3322  3345555644 334577776 4899999999999999999986 43  333211             


Q ss_pred             eecccccCchhHHhhhccCCCc-HHHHHHH----Hh-----cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          188 IRVLRNMDDDEVFTFAKNIAAP-YDLVMQT----KQ-----LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       188 ~~~l~~~~~d~~~~~~~~~~~~-~~l~~~i----~~-----~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                         ..            +++.| ...+..+    .+     -..+||  ||.|||.++.|+.+++.+|||.||+|+.|.+
T Consensus       192 ---~t------------GvG~Pq~sAv~e~a~~~~~~~~~~~~~v~i--iaDGGi~~~gdi~KAla~GAd~VM~G~~lAg  254 (362)
T d1pvna1         192 ---QK------------GIGRGQATAVIDVVAERNKYFEETGIYIPV--CSDGGIVYDYHMTLALAMGADFIMLGRYFAR  254 (362)
T ss_dssp             ---HT------------CBCCCHHHHHHHHHHHHHHHHHHHSEECCE--EEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred             ---hh------------ccCCchHHHHHHHHHHHHHhhhhcccCCce--eeccccCcccceeEEEEEeccceeehhhhhc
Confidence               01            11111 1111111    11     125899  7899999999999999999999999999997


Q ss_pred             CC
Q 037779          258 SG  259 (310)
Q Consensus       258 ~~  259 (310)
                      +.
T Consensus       255 ~~  256 (362)
T d1pvna1         255 FE  256 (362)
T ss_dssp             BT
T ss_pred             cc
Confidence            64

>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]

Probab=98.88  E-value=7.7e-08  Score=82.13  Aligned_cols=156  Identities=15%  Similarity=0.091  Sum_probs=111.7

Q ss_pred             HHHHHHHHHcCCcEEE-ecccccchhhhcCCCCCCCChHHHHHHHhhc-CcceEeeccccchHHHHHHHHcCCCeeeecC
Q 037779           45 PEQARIAEEAGACAVM-ALERVPADIRAQGGVARMSDPQLIKQIKSSV-TIPVMAKARIGHFVEAQILEAIGVDYVDESE  122 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~-~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~-~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~  122 (310)
                      .+.++.+.++|...+- .+|    .+.         ..+.++.+++.. ++.|-+... -+.++++.+.++||+++..+.
T Consensus        32 ~~~~~al~~~Gi~~iEitl~----~p~---------a~~~i~~l~~~~p~~~vGaGTV-~~~~~~~~a~~aGa~FivsP~   97 (216)
T d1mxsa_          32 LPLADALAAGGIRTLEVTLR----SQH---------GLKAIQVLREQRPELCVGAGTV-LDRSMFAAVEAAGAQFVVTPG   97 (216)
T ss_dssp             HHHHHHHHHTTCCEEEEESS----STH---------HHHHHHHHHHHCTTSEEEEECC-CSHHHHHHHHHHTCSSEECSS
T ss_pred             HHHHHHHHHCCCCEEEEeCC----Chh---------HHHHHHHHHHhCCCcceeeeee-ecHHHHHHHHhCCCCEEECCC
Confidence            4789999999999871 121    111         156777777764 444433332 245789999999999997543


Q ss_pred             CCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhh
Q 037779          123 VLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTF  202 (310)
Q Consensus       123 ~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~  202 (310)
                        ...++.+..++  .+++++.++-|+.|+..+.+.|+++++++....                                
T Consensus        98 --~~~~v~~~a~~--~~i~~iPGv~TpsEi~~A~~~G~~~vKlFPA~~--------------------------------  141 (216)
T d1mxsa_          98 --ITEDILEAGVD--SEIPLLPGISTPSEIMMGYALGYRRFKLFPAEI--------------------------------  141 (216)
T ss_dssp             --CCHHHHHHHHH--CSSCEECEECSHHHHHHHHTTTCCEEEETTHHH--------------------------------
T ss_pred             --CcHHHHHHHHh--cCCCccCCcCCHHHHHHHHHCCCCEEEeccccc--------------------------------
Confidence              24677777765  469999999999999999999999999973200                                


Q ss_pred             hccCCCcHHHHHHHHh-cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          203 AKNIAAPYDLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       203 ~~~~~~~~~l~~~i~~-~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                          ......++.++. ..++++  ++.||| +++++.+++++|+-.++.||.++.
T Consensus       142 ----~~g~~~ikal~~p~p~~~f--iptGGV-~~~n~~~yl~~~~v~avggs~l~~  190 (216)
T d1mxsa_         142 ----SGGVAAIKAFGGPFGDIRF--CPTGGV-NPANVRNYMALPNVMCVGTTWMLD  190 (216)
T ss_dssp             ----HTHHHHHHHHHTTTTTCEE--EEBSSC-CTTTHHHHHHSTTBCCEEECTTSC
T ss_pred             ----cccHHHHHHHhcccccCce--eccCCC-CHHHHHHHHhcCCeEEEEccccCC
Confidence                001233444444 245778  678999 589999999999989999998886

>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=98.65  E-value=1.7e-08  Score=90.63  Aligned_cols=52  Identities=29%  Similarity=0.383  Sum_probs=45.9

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV  262 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~  262 (310)
                      .++.+..+++..++||  |+.|||.|++|+.+.+.+|||+|++||+++..++..
T Consensus       229 ~l~~i~~i~~~~~ipI--ig~GGI~s~~Da~~~i~~GAd~V~ig~~~~~~P~i~  280 (311)
T d1ep3a_         229 ALKLIHQVAQDVDIPI--IGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVC  280 (311)
T ss_dssp             HHHHHHHHHTTCSSCE--EECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHH
T ss_pred             hHHHHHHHhhhcceeE--EEeCCcCCHHHHHHHHHcCCCEEEecHHHHcCChHH
Confidence            4677888888778999  779999999999999999999999999999977644

>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.61  E-value=7.6e-07  Score=81.88  Aligned_cols=175  Identities=18%  Similarity=0.209  Sum_probs=102.1

Q ss_pred             ccCCCHHHHHHHHHcCCcEEEecc-cccchhhhcCCCCCCCChHHHHHHHhhcCcc---------eEeeccc--cchHHH
Q 037779           40 MDVVTPEQARIAEEAGACAVMALE-RVPADIRAQGGVARMSDPQLIKQIKSSVTIP---------VMAKARI--GHFVEA  107 (310)
Q Consensus        40 ~~~~~~~~a~~~~~~Ga~~I~~l~-~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lP---------v~~kd~i--~~~~~~  107 (310)
                      ..+.++++|..+.+.|.-.+  |+ ..+.+..          .+.++.++..-..|         +++...+  ...+.+
T Consensus        54 DtV~~~~mA~~la~~Gglgv--lhr~~~~e~~----------~~~v~~v~~~e~~~~~~~d~~~~~~v~~~~~~~~~~r~  121 (368)
T d2cu0a1          54 DTVTEWEMAVAMAREGGLGV--IHRNMGIEEQ----------VEQVKRVKRAEKYKNAVRDENGELLVAAAVSPFDIKRA  121 (368)
T ss_dssp             TTTCSHHHHHHHHHTTCEEE--ECSSSCHHHH----------HHHHHHHHTCCCCTTCCBCTTSCBCCEEEECTTCHHHH
T ss_pred             CCcCCHHHHHHHHHCCCeeE--ecccCCHHHH----------HHHHHhhhhhhhccccccccCccEEEEeccChHHHHHH
Confidence            34556899999999987775  32 1111111          23344444322222         2221111  234677


Q ss_pred             HHHHHcCCCeeeec-CCCChhHH---HHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEe-cC--CCCCchHHHHH
Q 037779          108 QILEAIGVDYVDES-EVLTPADE---ENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTK-GE--AGTGNIVEAVR  179 (310)
Q Consensus       108 ~~~~~aGad~v~~~-~~~~~~~~---~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~-g~--~~~~~~~~~~~  179 (310)
                      +.+..+|+|.+.++ +--.....   ++.++. .+..+++++ +.|.+-++.  ..|+|+|++. |+  .+++..     
T Consensus       122 ~~l~~aGvd~ivID~A~Gh~~~~i~~lK~ir~-~~~~~vIaGNVaT~e~~~~--l~gaD~VkVGIG~Gs~CTTr~-----  193 (368)
T d2cu0a1         122 IELDKAGVDVIVVDTAHAHNLKAIKSMKEMRQ-KVDADFIVGNIANPKAVDD--LTFADAVKVGIGPGSICTTRI-----  193 (368)
T ss_dssp             HHHHHTTCSEEEEECSCCCCHHHHHHHHHHHH-TCCSEEEEEEECCHHHHTT--CTTSSEEEECSSCSTTBCHHH-----
T ss_pred             HHHHHcCCCEEEecCcccchhhhhhhhhhhhh-hcccceeeccccCHHHHHh--hhcCcceeecccCcccccchh-----
Confidence            88889999998732 11122333   333433 345677775 888776543  3699999985 33  233211     


Q ss_pred             HHHHhhcceecccccCchhHHhhhccCCCc-HHHHHHHHh---cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccc
Q 037779          180 HVRSVMGDIRVLRNMDDDEVFTFAKNIAAP-YDLVMQTKQ---LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGV  255 (310)
Q Consensus       180 ~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~-~~l~~~i~~---~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai  255 (310)
                                 ..            +.+.| ...+..+.+   ...+||  ||.|||.++.|+.+++.+|||.||+|+.|
T Consensus       194 -----------~t------------GvG~Pq~sAi~e~~~~~~~~~~~i--iADGGi~~~Gdi~KAla~GAd~VMlG~~l  248 (368)
T d2cu0a1         194 -----------VA------------GVGVPQITAVAMVADRAQEYGLYV--IADGGIRYSGDIVKAIAAGADAVMLGNLL  248 (368)
T ss_dssp             -----------HT------------CCCCCHHHHHHHHHHHHHHHTCEE--EEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred             -----------hc------------ccccchHHHHHHHHHHHhccCCee--EecCCCCcCChhheeeeeccceeeccchh
Confidence                       01            12222 122222221   135788  78999999999999999999999999999


Q ss_pred             ccCC
Q 037779          256 FKSG  259 (310)
Q Consensus       256 ~~~~  259 (310)
                      .++.
T Consensus       249 Ag~~  252 (368)
T d2cu0a1         249 AGTK  252 (368)
T ss_dssp             TTBT
T ss_pred             cccc
Confidence            8854

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.20  E-value=1.5e-05  Score=72.08  Aligned_cols=56  Identities=18%  Similarity=0.252  Sum_probs=47.7

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~  266 (310)
                      ...+.+.+++..++||  ++.|||.+++++.++++.| ||.|.+|++++..+|....++
T Consensus       264 ~~~~~~~ik~~~~~pv--i~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadPd~~~k~~  320 (337)
T d1z41a1         264 QVSFAEKIREQADMAT--GAVGMITDGSMAEEILQNGRADLIFIGRELLRDPFFARTAA  320 (337)
T ss_dssp             THHHHHHHHHHHCCEE--EECSSCCSHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHHH
T ss_pred             cHHHHHHHHHhcCceE--EEeCCcCCHHHHHHHHHCCCcceehhhHHHHhCchHHHHHH
Confidence            4567777888778999  5689999999999999998 999999999999888765544

>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Archaeal fructose 1,6-bisphosphate aldolase
species: Archaeon Thermoproteus tenax [TaxId: 2271]

Probab=98.15  E-value=2.4e-05  Score=67.89  Aligned_cols=57  Identities=30%  Similarity=0.481  Sum_probs=42.3

Q ss_pred             HHhcCCCCEEEEccCCC-CCHHHH----HHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779          216 TKQLGRLPVVHFAAGGV-ATPADA----AMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       216 i~~~~~iPVv~ia~GGI-~t~~di----~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                      +.....+||++ +.|+= .+.+++    +.+++.||.|+++|+.+++++||.++++++...++
T Consensus       189 v~~a~~~pv~~-~gG~~~~~~~~~l~~~~~a~~~Ga~G~~~GRni~q~~~p~~~~~al~~ivH  250 (251)
T d1ojxa_         189 VKVAGKVPVLM-SGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAELVY  250 (251)
T ss_dssp             HHHTTTSCEEE-ECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTSTTHHHHHHHHHHHHC
T ss_pred             HHhcCCCceEE-eCCCCCCCHHHHHHHHHHHHHCCCcEEeechhhhCcCcHHHHHHHHHHHhc
Confidence            33445689874 34443 245543    45667899999999999999999999999988764

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.11  E-value=3.2e-05  Score=69.70  Aligned_cols=55  Identities=16%  Similarity=0.210  Sum_probs=46.8

Q ss_pred             HHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHH
Q 037779          210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       210 ~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~  266 (310)
                      ..+.+.+++..++||  |+.|||.+++.+.++++.| ||.|.+|++++..+|....++
T Consensus       269 ~~~~~~ik~~~~~pv--i~~G~i~~~~~ae~~l~~g~~D~V~~gR~~iadP~~~~k~~  324 (330)
T d1ps9a1         269 SWVTRKLKGHVSLPL--VTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSKAQ  324 (330)
T ss_dssp             HHHHHHHTTSCSSCE--EECSSCCSHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHHH
T ss_pred             HHHHHHHHhhCCceE--EEeCCCCCHHHHHHHHHCCCcchhHhhHHHHhChhHHHHHH
Confidence            456677888778999  5689999999999999998 999999999999888765543

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.07  E-value=2.4e-05  Score=70.14  Aligned_cols=37  Identities=22%  Similarity=0.318  Sum_probs=33.6

Q ss_pred             CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          220 GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       220 ~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      .++||  |+.|||.++.|+.+++.+|||+|++|+.++.+
T Consensus       230 ~~v~v--iadGGIr~g~Dv~KAlalGAdaV~iGr~~l~a  266 (329)
T d1p0ka_         230 PASTM--IASGGLQDALDVAKAIALGASCTGMAGHFLKA  266 (329)
T ss_dssp             TTSEE--EEESSCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred             CCceE--EEcCCcccHHHHHHHHHcCCCchhccHHHHHH
Confidence            46899  67999999999999999999999999988863

>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Thermus thermophilus [TaxId: 274]

Probab=97.86  E-value=1.6e-05  Score=70.35  Aligned_cols=96  Identities=21%  Similarity=0.245  Sum_probs=59.9

Q ss_pred             CCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCC-CcHHHHHHHHhc-CCCCE
Q 037779          147 RNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIA-APYDLVMQTKQL-GRLPV  224 (310)
Q Consensus       147 ~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~-~~~~l~~~i~~~-~~iPV  224 (310)
                      .+.++++++.+.|+|.|.+.+..++..  ..++..+.....  .....         .+.+ +..+.+..+.+. .++||
T Consensus       171 ~~~e~a~~~~~aGvd~i~vsn~gg~~~--~~~~~~~~~~~~--~~~~~---------~~~g~~~~~al~~~~~~~~~i~I  237 (310)
T d1vcfa1         171 LSREAALALRDLPLAAVDVAGAGGTSW--ARVEEWVRFGEV--RHPEL---------CEIGIPTARAILEVREVLPHLPL  237 (310)
T ss_dssp             CCHHHHHHHTTSCCSEEECCCBTSCCH--HHHHHTC----------CC---------TTCSCBHHHHHHHHHHHCSSSCE
T ss_pred             ccHHHHHHHHHcCCCEEEeccccccch--hhcccccccCch--hhhhh---------hhcchHHHHHHHHHHhhcCCCeE
Confidence            678899999999999998876544321  111110000000  00000         0111 123334444443 47999


Q ss_pred             EEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          225 VHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       225 v~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                        |+.|||.+..|+.+++.+|||+|++|+.++.
T Consensus       238 --i~dGGIr~g~Dv~KALalGAdaV~iGr~~l~  268 (310)
T d1vcfa1         238 --VASGGVYTGTDGAKALALGADLLAVARPLLR  268 (310)
T ss_dssp             --EEESSCCSHHHHHHHHHHTCSEEEECGGGHH
T ss_pred             --EeCCCCCchHHHHHHHHhCCCEeeEhHHHHH
Confidence              6789999999999999999999999999976

>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Trimethylamine dehydrogenase, N-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.86  E-value=0.00012  Score=66.06  Aligned_cols=56  Identities=16%  Similarity=0.186  Sum_probs=48.3

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~  266 (310)
                      ..++.+.+++..++||  |+.|||.+++++.++++.| ||.|.+|+.++..+|....++
T Consensus       279 ~~~~~~~ik~~~~~pV--i~~G~i~~~~~a~~~l~~G~aDlV~~gR~~iadPdl~~k~~  335 (340)
T d1djqa1         279 TIPWVKLVKQVSKKPV--LGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQKVE  335 (340)
T ss_dssp             THHHHHHHHTTCSSCE--EECSCCCCHHHHHHHHHTTSCSBEEESHHHHHCTTHHHHHH
T ss_pred             cHHHHHHHHHHcCCeE--EEECCCCCHHHHHHHHHCCCccchhhHHHHHHCccHHHHHH
Confidence            4567788888888999  6689999999999999998 999999999999888766544

>d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.85  E-value=5.5e-05  Score=61.47  Aligned_cols=91  Identities=19%  Similarity=0.165  Sum_probs=66.7

Q ss_pred             hhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhcc
Q 037779          126 PADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN  205 (310)
Q Consensus       126 ~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  205 (310)
                      ..+.+..+++..+...+.+++.+.+|+..+.+.|+|+|.....                          +          
T Consensus        66 ~~~~~~~~~~~~~~~~IeVEv~~~~~~~~a~~~g~diImLDN~--------------------------~----------  109 (167)
T d1qapa1          66 VRQAVEKAFWLHPDVPVEVEVENLDELDDALKAGADIIMLDNF--------------------------N----------  109 (167)
T ss_dssp             HHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHTTCSEEEESSC--------------------------C----------
T ss_pred             hhhhhHHHhhcCCCceEEEecCcHHHHHHHHhcCCcEEEecCC--------------------------C----------
Confidence            4555666666567788999999999999999999999987421                          1          


Q ss_pred             CCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          206 IAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       206 ~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                         +.++.+.++.. .++.+  -++||| +++++.++.+.|+|.+.+|+-.+.+
T Consensus       110 ---pe~~~~av~~i~~~~~l--EaSGgI-~~~ni~~ya~~GVD~IS~galt~~a  157 (167)
T d1qapa1         110 ---TDQMREAVKRVNGQARL--EVSGNV-TAETLREFAETGVDFISVGALTKHV  157 (167)
T ss_dssp             ---HHHHHHHHHTTCTTCCE--EECCCS-CHHHHHHHHHTTCSEEECSHHHHEE
T ss_pred             ---HHHHHHHHHhcCCceEE--EEeCCC-CHHHHHHHHHcCCCEEECCcccCCC
Confidence               12222223222 24455  579999 6999999999999999999876653

>d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.85  E-value=6.1e-05  Score=61.35  Aligned_cols=95  Identities=15%  Similarity=0.100  Sum_probs=68.5

Q ss_pred             hhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhcc
Q 037779          126 PADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKN  205 (310)
Q Consensus       126 ~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~  205 (310)
                      ..+.++.+++..+...+.+++.|.+|+..+.+.|+|+|..-..                          +++.+      
T Consensus        66 i~~~i~~~k~~~~~~~I~VEv~s~~q~~~a~~~~~diImLDN~--------------------------sp~~~------  113 (169)
T d1qpoa1          66 VVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPEKPELILLDNF--------------------------AVWQT------  113 (169)
T ss_dssp             HHHHHHHHHHHCTTSCEEEEESSHHHHHHHGGGCCSEEEEETC--------------------------CHHHH------
T ss_pred             hhhhhhhhhhhcCCCceEEEeccHHHhhhhhhcCCcEEEecCc--------------------------ChHhH------
Confidence            4566666777667788999999999999999999999987521                          11111      


Q ss_pred             CCCcHHHHHHHHhcC-CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          206 IAAPYDLVMQTKQLG-RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       206 ~~~~~~l~~~i~~~~-~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                          .+.++.++... .+.+  -++||| +++++.++.+.|+|.+.+|+..+.++
T Consensus       114 ----k~~v~~~~~~~~~i~l--EaSGgI-~~~ni~~ya~~GvD~IS~galt~sa~  161 (169)
T d1qpoa1         114 ----QTAVQRRDSRAPTVML--ESSGGL-SLQTAATYAETGVDYLAVGALTHSVR  161 (169)
T ss_dssp             ----HHHHHHHHHHCTTCEE--EEESSC-CTTTHHHHHHTTCSEEECGGGTSSBC
T ss_pred             ----HHHHHHhhccCCeeEE--EEeCCC-CHHHHHHHHHcCCCEEECCccccCCC
Confidence                12333333322 2333  579999 69999999999999999997766543

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

Probab=97.83  E-value=0.0011  Score=56.78  Aligned_cols=167  Identities=19%  Similarity=0.234  Sum_probs=96.8

Q ss_pred             CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee------ccccc-------hHHHHH
Q 037779           43 VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK------ARIGH-------FVEAQI  109 (310)
Q Consensus        43 ~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k------d~i~~-------~~~~~~  109 (310)
                      .+++-|..+.++||+.| -|.   ... ..+|-  -++..+++.+++.+++||-+.      +|+-+       .++++.
T Consensus         8 ~s~~~a~~A~~~GAdRI-ELc---~~l-~~GGl--TPS~g~i~~~~~~~~iPv~vMIRPR~GdF~Ys~~E~~~M~~di~~   80 (247)
T d1twda_           8 YSMECALTAQQNGADRV-ELC---AAP-KEGGL--TPSLGVLKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRT   80 (247)
T ss_dssp             SSHHHHHHHHHTTCSEE-EEC---BCG-GGTCB--CCCHHHHHHHHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCEE-EEc---CCc-ccCCC--CCCHHHHHHHHHhcCCCeEEEEecCCCCCCCCHHHHHHHHHHHHH
Confidence            45788999999999998 441   111 22343  467899999999999998764      23311       135667


Q ss_pred             HHHcCCCeeee---c-CC-CChhHHHHHHHhcCCCCcEEe-----ecCCHHHHH-HHHHhCCCEEEEecCCCCCchHHHH
Q 037779          110 LEAIGVDYVDE---S-EV-LTPADEENHINKHNFRVPFVC-----GCRNLGESL-RRIREGAAMIRTKGEAGTGNIVEAV  178 (310)
Q Consensus       110 ~~~aGad~v~~---~-~~-~~~~~~~~~~~~~~~~l~v~~-----~v~t~~ea~-~a~~~Gad~I~v~g~~~~~~~~~~~  178 (310)
                      +.++|+|+|..   . +. +....+.+.+...+ ++++..     .+.++.++. ...+.|.+-|-+.|-..        
T Consensus        81 ~k~~G~dGvV~G~L~~dg~iD~~~~~~L~~~a~-~l~vTFHRAfD~~~d~~~al~~Li~lG~~rILTSGg~~--------  151 (247)
T d1twda_          81 VRELGFPGLVTGVLDVDGNVDMPRMEKIMAAAG-PLAVTFHRAFDMCANPLYTLNNLAELGIARVLTSGQKS--------  151 (247)
T ss_dssp             HHHTTCSEEEECCBCTTSSBCHHHHHHHHHHHT-TSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEECTTSS--------
T ss_pred             HHHcCCCeEEEEEECCCCCccHHHHHHHHHHhc-ccCeeeehhhhhhCCHHHHHHHHHhcCCCeEeccCCCC--------
Confidence            77899999872   1 11 22333333333221 233322     123344333 33456665554443211        


Q ss_pred             HHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779          179 RHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       179 ~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs  253 (310)
                                                ......+.++.+.+..+-+++ ++.||| +++++..+++.|+..+=.+.
T Consensus       152 --------------------------~a~~G~~~L~~L~~~a~~~iI-m~GgGI-~~~Ni~~l~~~g~~e~H~sa  198 (247)
T d1twda_         152 --------------------------DALQGLSKIMELIAHRDAPII-MAGAGV-RAENLHHFLDAGVLEVHSSA  198 (247)
T ss_dssp             --------------------------STTTTHHHHHHHHTSSSCCEE-EEESSC-CTTTHHHHHHHTCSEEEECC
T ss_pred             --------------------------chhHHHHHHHHHHHhcCCcEE-EecCCC-CHHHHHHHHHcCCCEEEECC
Confidence                                      011134455555554333443 789999 59999999999998876544

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.78  E-value=4.6e-05  Score=69.07  Aligned_cols=95  Identities=20%  Similarity=0.364  Sum_probs=68.0

Q ss_pred             HHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCC
Q 037779          130 ENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAA  208 (310)
Q Consensus       130 ~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~  208 (310)
                      +..+++. .+.++++ ++.+.+++..+.+.|+|.+.+.+..+..                  +..            ...
T Consensus       209 i~~l~~~-~~~pii~Kgi~~~~da~~a~~~G~d~i~vsnhggr~------------------~d~------------~~~  257 (349)
T d1tb3a1         209 LSLLQSI-TRLPIILKGILTKEDAELAMKHNVQGIVVSNHGGRQ------------------LDE------------VSA  257 (349)
T ss_dssp             HHHHHTT-CCSCEEEEEECSHHHHHHHHHTTCSEEEECCGGGTS------------------SCS------------BCC
T ss_pred             HHHHHHh-cCCCcccchhhhhHHHHHHHHhhccceeeecccccc------------------ccc------------ccc
Confidence            3444442 2455444 6899999999999999999886442211                  111            122


Q ss_pred             cHHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          209 PYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       209 ~~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                      +.+.+..+.+.  .++||  |++|||.+..|+.+++.+||++|.+|+.++.
T Consensus       258 ~~~~l~~i~~~~~~~~~i--iadGGIR~G~Dv~KALALGA~~V~igrp~L~  306 (349)
T d1tb3a1         258 SIDALREVVAAVKGKIEV--YMDGGVRTGTDVLKALALGARCIFLGRPILW  306 (349)
T ss_dssp             HHHHHHHHHHHHTTSSEE--EEESSCCSHHHHHHHHHTTCSCEEESHHHHH
T ss_pred             chhhcceeeeccCCCeeE--EeccCcCcHHHHHHHHHcCCCEEEEChHHHH
Confidence            44555555553  36788  7899999999999999999999999998886

>d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI
species: Escherichia coli [TaxId: 562]

Probab=97.76  E-value=0.00037  Score=57.94  Aligned_cols=182  Identities=15%  Similarity=0.133  Sum_probs=105.9

Q ss_pred             CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc-chHHH-HHHHHcCCCeee
Q 037779           42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG-HFVEA-QILEAIGVDYVD  119 (310)
Q Consensus        42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~-~~~~~-~~~~~aGad~v~  119 (310)
                      ..+++.++.+.++|++++- +...|..+|       .-+++..+++.+...+. .+..+.. +.+++ +.+...+.|.+.
T Consensus         8 It~~~d~~~~~~~gaD~iG-fif~~~SpR-------~Vs~~~a~~i~~~~~~~-~V~Vfv~~~~~~i~~~~~~~~~d~iQ   78 (198)
T d1piia1           8 LTRGQDAKAAYDAGAIYGG-LIFVATSPR-------CVNVEQAQEVMAAAPLQ-YVGVFRNHDIADVVDKAKVLSLAAVQ   78 (198)
T ss_dssp             CCSHHHHHHHHHHTCSEEE-EECCTTCTT-------BCCHHHHHHHHHHCCCE-EEEEESSCCHHHHHHHHHHHTCSEEE
T ss_pred             CCcHHHHHHHHhCCCCEEE-EEccCCCCC-------CcCHHHHHHhhhhcccc-cceeeeccchhhHHHhhhccccccee
Confidence            4668999999999999983 222333344       33588888887766422 2233333 33444 456668999987


Q ss_pred             ecCCCChhHHHHHHHhcCCC-CcEEe--ecCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHHHHHhhcceecccccC
Q 037779          120 ESEVLTPADEENHINKHNFR-VPFVC--GCRNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRHVRSVMGDIRVLRNMD  195 (310)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~-l~v~~--~v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~~  195 (310)
                      .+...++ +..+.++...+. ..+..  +..+.....  ....+|.+... ...++|                       
T Consensus        79 lHG~e~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~lld~~~gGtG-----------------------  132 (198)
T d1piia1          79 LHGNEEQ-LYIDTLREALPAHVAIWKALSVGETLPAR--EFQHVDKYVLDNGQGGSG-----------------------  132 (198)
T ss_dssp             ECSCCCH-HHHHHHHHHSCTTSEEEEEEECSSSCCCC--CCTTCCEEEEESCSCCSS-----------------------
T ss_pred             ecCCccH-HHHHHHhccccccccceeccchhhhhhHH--HhhhhcccccCCcccccc-----------------------
Confidence            5544444 444555553222 22221  221111000  01123433332 222222                       


Q ss_pred             chhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC---CHHHHHHHHHHHH
Q 037779          196 DDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG---DPVRRARAIVQAV  272 (310)
Q Consensus       196 ~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~---dp~~~~~~~~~~~  272 (310)
                                ..-+|+++.   .....|+  +.+||| +++++.++++.++.||=|.|.+=.++   | ...+++|.+.+
T Consensus       133 ----------~~fdw~~~~---~~~~~~~--~LAGGl-~~~Nv~~a~~~~p~gvDvsSGvE~~pG~KD-~~ki~~f~~~v  195 (198)
T d1piia1         133 ----------QRFDWSLLN---GQSLGNV--LLAGGL-GADNCVEAAQTGCAGLDFNSAVESQPGIKD-ARLLASVFQTL  195 (198)
T ss_dssp             ----------CCCCGGGGT---TSCCTTE--EEESSC-CTTTHHHHHTTCCSEEEECGGGEEETTEEC-HHHHHHHHHHH
T ss_pred             ----------eeeehhhhc---cccccee--EEecCC-CHHHHHHHHhcCCCEEEeCCcccCCCCCcC-HHHHHHHHHHH
Confidence                      122455433   2334587  458999 69999999999999999999997654   4 46788898888


Q ss_pred             HcC
Q 037779          273 TNY  275 (310)
Q Consensus       273 ~~~  275 (310)
                      ++|
T Consensus       196 r~~  198 (198)
T d1piia1         196 RAY  198 (198)
T ss_dssp             HCC
T ss_pred             hcC
Confidence            765

>d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.73  E-value=5.2e-05  Score=61.81  Aligned_cols=96  Identities=18%  Similarity=0.249  Sum_probs=67.5

Q ss_pred             ChhHHHHHHHh-cCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhh
Q 037779          125 TPADEENHINK-HNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFA  203 (310)
Q Consensus       125 ~~~~~~~~~~~-~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  203 (310)
                      +..+.++.+++ ..+...+.+++.|++|+..+++.|+|+|...+.                          +++.+    
T Consensus        63 ~~~~~~~~~~~~~~~~~~I~VEv~~~~e~~~a~~~g~d~i~LDn~--------------------------~pe~~----  112 (170)
T d1o4ua1          63 SAERAVQEVRKIIPFTTKIEVEVENLEDALRAVEAGADIVMLDNL--------------------------SPEEV----  112 (170)
T ss_dssp             SHHHHHHHHHTTSCTTSCEEEEESSHHHHHHHHHTTCSEEEEESC--------------------------CHHHH----
T ss_pred             cHHHHHHHHHhhCCCCceEEEEeCcHHHHHHHHhcCccEEEEcCc--------------------------ChhhH----
Confidence            34566666665 334577899999999999999999999887521                          11111    


Q ss_pred             ccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC
Q 037779          204 KNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG  259 (310)
Q Consensus       204 ~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~  259 (310)
                            .++.+.++.. .++.+  -++||| +++++.++.+.|+|.+.+|+..+.++
T Consensus       113 ------k~~~~~lk~~~~~i~l--EaSGGI-~~~ni~~~a~~GVD~Is~g~lt~~a~  160 (170)
T d1o4ua1         113 ------KDISRRIKDINPNVIV--EVSGGI-TEENVSLYDFETVDVISSSRLTLQEV  160 (170)
T ss_dssp             ------HHHHHHHHHHCTTSEE--EEEECC-CTTTGGGGCCTTCCEEEEGGGTSSCC
T ss_pred             ------hHHHHHHHhhCCcEEE--EEECCC-CHHHHHHHHHcCCCEEEcCccccCCC
Confidence                  2233344443 23334  679999 69999999999999999998766544

>d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=5.9e-05  Score=64.36  Aligned_cols=140  Identities=15%  Similarity=0.226  Sum_probs=77.8

Q ss_pred             HHHHHHHhcCCCCcEEeecCCH-------HHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcc-e-----eccccc
Q 037779          128 DEENHINKHNFRVPFVCGCRNL-------GESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGD-I-----RVLRNM  194 (310)
Q Consensus       128 ~~~~~~~~~~~~l~v~~~v~t~-------~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~-~-----~~l~~~  194 (310)
                      +.++.++++  +..++.+.+..       .+++.+.+.|++++.+++..+...+..+++..++.... .     ..+...
T Consensus        45 ~~i~~l~~~--~~~if~D~K~~DI~nt~~~~~~~~~~~~~~~~tvh~~~g~~~l~~~~~~~~~~~~~~~~~~~v~~~ts~  122 (231)
T d1eixa_          45 QFVRELQQR--GFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSM  122 (231)
T ss_dssp             HHHHHHHHT--TCCEEEEEEECSCHHHHHHHHHHHHHHTCSEEEEBGGGCHHHHHHHHHTTGGGGGGCCEEEEECSCTTC
T ss_pred             HHHHHHHhc--CchhhHhhHhhcCcHHHHHHHHhhhcccceEEEEeccCcHHHHHHHHHhhhhcCccceEEEEEeecccc
Confidence            445556553  45577775422       25666778899999998665544445555555555443 1     111111


Q ss_pred             CchhHHh-------------h---hc-----c-CCCcHHHHHHHHhc-CCCCEEEEccCCCCCHH----------HHHHH
Q 037779          195 DDDEVFT-------------F---AK-----N-IAAPYDLVMQTKQL-GRLPVVHFAAGGVATPA----------DAAMM  241 (310)
Q Consensus       195 ~~d~~~~-------------~---~~-----~-~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~----------di~~~  241 (310)
                      +.....+             .   +.     . ...+.+ ...+.+. ..-.+  +...||+...          +..++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--~~tPGI~~~~~~~~dq~r~~tp~~A  199 (231)
T d1eixa_         123 EASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQE-AVRFKQVFGQEFK--LVTPGIRPQGSEAGDQRRIMTPEQA  199 (231)
T ss_dssp             CHHHHHTTTCCSCHHHHHHHHHHHHHHTTCSEEECCGGG-HHHHHHHHCSSSE--EEECCBCCTTCCCTTCCSCBCHHHH
T ss_pred             ccchhcccccccchhHHHHHHHHHHHHhccccccccchh-hhhhhhhcCCccc--eecCCcccCCCCccCccccCCHHHH
Confidence            1110000             0   00     0 011121 1222221 12223  3468875321          25667


Q ss_pred             HHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779          242 MQLGCDGVFVGSGVFKSGDPVRRARAIVQAV  272 (310)
Q Consensus       242 ~~~GadgV~VGsai~~~~dp~~~~~~~~~~~  272 (310)
                      ++.|+|-++||++|++++||.+.++++++.+
T Consensus       200 i~~GaD~iIVGR~It~a~dP~~aa~~i~~~i  230 (231)
T d1eixa_         200 LSAGVDYMVIGRPVTQSVDPAQTLKAINASL  230 (231)
T ss_dssp             HHTTCSEEEECHHHHTSSSHHHHHHHHHHHT
T ss_pred             HHcCCCEEEECCcccCCCCHHHHHHHHHHHh
Confidence            8899999999999999999999999998765

>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.69  E-value=0.00048  Score=57.36  Aligned_cols=44  Identities=25%  Similarity=0.485  Sum_probs=37.6

Q ss_pred             cCCCCC-HHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779          229 AGGVAT-PADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV  272 (310)
Q Consensus       229 ~GGI~t-~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~  272 (310)
                      ..||+. ..+..+++++|+|-++|||+|++++||.+.++++++.+
T Consensus       161 ~pGI~~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~aa~~i~~~i  205 (206)
T d2czda1         161 APGIGAQGGKAKDAVKAGADYIIVGRAIYNAPNPREAAKAIYDEI  205 (206)
T ss_dssp             ECCCCSSTTHHHHHHHHTCSEEEECHHHHTSSSHHHHHHHHHHHH
T ss_pred             CCCccccCCCHHHHHHhCCCEEEEChhhccCCCHHHHHHHHHHHh
Confidence            366642 35788889999999999999999999999999998876

>d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI
species: Thermotoga maritima [TaxId: 2336]

Probab=97.64  E-value=0.0021  Score=53.31  Aligned_cols=187  Identities=16%  Similarity=0.131  Sum_probs=111.6

Q ss_pred             CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcC-cceEeecccc-chHHH-HHHHHcCCCee
Q 037779           42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVT-IPVMAKARIG-HFVEA-QILEAIGVDYV  118 (310)
Q Consensus        42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~-lPv~~kd~i~-~~~~~-~~~~~aGad~v  118 (310)
                      ..+++.|+.+.++|++.+-.. ..|..+|       .-+++..+++.+... -...+..+.. ..+++ +.+...+.|.+
T Consensus         9 it~~~da~~~~~~gad~iGfI-~~~~SpR-------~Vs~~~a~~i~~~~~~~~~~V~V~v~~~~~~i~~~~~~~~~~~v   80 (205)
T d1nsja_           9 ITNLEDALFSVESGADAVGFV-FYPKSKR-------YISPEDARRISVELPPFVFRVGVFVNEEPEKILDVASYVQLNAV   80 (205)
T ss_dssp             CCSHHHHHHHHHHTCSEEEEE-CCTTCTT-------BCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHHTCSEE
T ss_pred             CCcHHHHHHHHhCCCCEEeEe-ccCCCCC-------ccCHHHHHHHHhhhcccceeeccccccHHHHHHhhhhhccccch
Confidence            467899999999999997322 2233333       345788888876653 2222333333 22333 45566899998


Q ss_pred             eecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEe--cCCCCCchHHHHHHHHHhhcceecccccCc
Q 037779          119 DESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTK--GEAGTGNIVEAVRHVRSVMGDIRVLRNMDD  196 (310)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~--g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  196 (310)
                      ..+...+ .+..+.++.. ..+.......+..+...+.....+++-..  ....+++                       
T Consensus        81 Qlhg~e~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~~~~~GGt-----------------------  135 (205)
T d1nsja_          81 QLHGEEP-IELCRKIAER-ILVIKAVGVSNERDMERALNYREFPILLDTKTPEYGGS-----------------------  135 (205)
T ss_dssp             EECSCCC-HHHHHHHHTT-SEEEEEEEESSHHHHHHHGGGTTSCEEEEESCSSSSSC-----------------------
T ss_pred             hccchhh-HHHHhhcccc-eeeeeeccccchHHHHHHhhcccceeeeccccccCCCC-----------------------
Confidence            7554433 4444445432 22344445566666666666555544332  1222221                       


Q ss_pred             hhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCC---CHHHHHHHHHHHH
Q 037779          197 DEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSG---DPVRRARAIVQAV  272 (310)
Q Consensus       197 d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~---dp~~~~~~~~~~~  272 (310)
                              +..-+|.++..+... ..|+  +.+||| +++++.++++ .++.||=|.|.+=.++   | ...+++|.+.+
T Consensus       136 --------G~~~dw~~~~~~~~~-~~~~--~LAGGl-~~~Nv~~ai~~~~p~gvDvsSgvE~~~G~KD-~~ki~~f~~~v  202 (205)
T d1nsja_         136 --------GKTFDWSLILPYRDR-FRYL--VLSGGL-NPENVRSAIDVVRPFAVDVSSGVEAFPGKKD-HDSIKMFIKNA  202 (205)
T ss_dssp             --------CSCCCGGGTGGGGGG-SSCE--EEESSC-CTTTHHHHHHHHCCSEEEESGGGEEETTEEC-HHHHHHHHHHH
T ss_pred             --------Ccccchhhcccchhc-ccce--eeecCC-CHHHHHHHHHHhCCCEEEEcCcccCCCCccC-HHHHHHHHHHH
Confidence                    112245555555432 2477  448999 6999999886 7999999999996643   4 45778888877


Q ss_pred             Hc
Q 037779          273 TN  274 (310)
Q Consensus       273 ~~  274 (310)
                      ++
T Consensus       203 r~  204 (205)
T d1nsja_         203 KG  204 (205)
T ss_dssp             HT
T ss_pred             hC
Confidence            53

>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Membrane-associated (S)-mandelate dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.63  E-value=8e-05  Score=67.15  Aligned_cols=96  Identities=20%  Similarity=0.256  Sum_probs=65.3

Q ss_pred             HHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCc
Q 037779          130 ENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAP  209 (310)
Q Consensus       130 ~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~  209 (310)
                      ++.++....+-.++-++.+.+++.++.+.|++.+.+..+.+.                  .+.+            ....
T Consensus       214 i~~l~~~~~~~i~~kgv~~~~~~~~a~~~g~~~~~~s~~gg~------------------~~~~------------~~~~  263 (353)
T d1p4ca_         214 LRWLRDLWPHKLLVKGLLSAEDADRCIAEGADGVILSNHGGR------------------QLDC------------AISP  263 (353)
T ss_dssp             HHHHHHHCCSEEEEEEECCHHHHHHHHHTTCSEEEECCGGGT------------------SCTT------------CCCG
T ss_pred             HHHHHhccccchhhhcchhhhhHHHHHhcCCchhhhcccccc------------------cccc------------cccc
Confidence            344444332223455788999999999999998776532111                  0111            1123


Q ss_pred             HHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          210 YDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       210 ~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                      .+.+..+....++||  |++|||.++-|+.+++.+|||.|.+|+.++.
T Consensus       264 ~~~l~~i~~~~~~~v--iasGGIR~G~Dv~KALaLGAd~vgigrp~L~  309 (353)
T d1p4ca_         264 MEVLAQSVAKTGKPV--LIDSGFRRGSDIVKALALGAEAVLLGRATLY  309 (353)
T ss_dssp             GGTHHHHHHHHCSCE--EECSSCCSHHHHHHHHHTTCSCEEESHHHHH
T ss_pred             hhcccchhcccccce--eecCCcCchHHHHHHHHcCCCEEEEcHHHHH
Confidence            344444544456798  6799999999999999999999999998885

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=97.60  E-value=0.00083  Score=56.36  Aligned_cols=126  Identities=17%  Similarity=0.257  Sum_probs=90.6

Q ss_pred             hHHHHHHHhhcCcceEeeccccch-HHHHHHHHcCCCeeeec-CCCChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHH
Q 037779           81 PQLIKQIKSSVTIPVMAKARIGHF-VEAQILEAIGVDYVDES-EVLTPADEENHINKHNFRVPFVCG-CRNLGESLRRIR  157 (310)
Q Consensus        81 ~~~i~~i~~~~~lPv~~kd~i~~~-~~~~~~~~aGad~v~~~-~~~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~  157 (310)
                      .+.++.+++.-=+|++..+-..+. ..++.+.+.|...+-++ ......+.++.++++.+++.++++ +.|.++++++.+
T Consensus         5 ~~~~~~l~~~~iipvlr~~~~~~~~~~~~al~~~Gi~~iEitl~~~~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~   84 (212)
T d1vhca_           5 QQIIEKLRELKIVPVIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKS   84 (212)
T ss_dssp             HHHHHHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHH
T ss_pred             HHHHHHHHHCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCceEeeeecccHHHHHHHHh
Confidence            455666666545788776554432 34578888999998744 223455677777776678889885 899999999999


Q ss_pred             hCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHH
Q 037779          158 EGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPAD  237 (310)
Q Consensus       158 ~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~d  237 (310)
                      +|++|+..-+                                        .+.++++...+ .++|.  +  =|+.||.+
T Consensus        85 aGa~FivSP~----------------------------------------~~~~v~~~a~~-~~i~~--i--PGv~TpsE  119 (212)
T d1vhca_          85 SGADFVVTPG----------------------------------------LNPKIVKLCQD-LNFPI--T--PGVNNPMA  119 (212)
T ss_dssp             HTCSEEECSS----------------------------------------CCHHHHHHHHH-TTCCE--E--CEECSHHH
T ss_pred             hCCcEEECCC----------------------------------------CCHHHHHHHHh-cCCCc--c--CCcCCHHH
Confidence            9999987411                                        12345555555 46888  4  77889999


Q ss_pred             HHHHHHcCCCEEEE
Q 037779          238 AAMMMQLGCDGVFV  251 (310)
Q Consensus       238 i~~~~~~GadgV~V  251 (310)
                      +..++++|++.|=+
T Consensus       120 i~~A~~~G~~~vK~  133 (212)
T d1vhca_         120 IEIALEMGISAVKF  133 (212)
T ss_dssp             HHHHHHTTCCEEEE
T ss_pred             HHHHHHCCCCEEEE
Confidence            99999999998864

>d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI
species: Thermus thermophilus [TaxId: 274]

Probab=97.57  E-value=0.0021  Score=53.16  Aligned_cols=184  Identities=18%  Similarity=0.190  Sum_probs=104.4

Q ss_pred             CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcc-eEeecccc-chHHH-HHHHHcCCCee
Q 037779           42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIP-VMAKARIG-HFVEA-QILEAIGVDYV  118 (310)
Q Consensus        42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lP-v~~kd~i~-~~~~~-~~~~~aGad~v  118 (310)
                      ..+++.++.+.++|++.+- +...+..+|       .-+++..+++.+...-. ..+..+.. +.+.+ +.+...+.|.+
T Consensus         8 it~~ed~~~~~~~gad~iG-fif~~~SpR-------~vs~~~a~~i~~~~~~~~~~V~Vf~~~~~~~i~~~~~~~~~d~v   79 (200)
T d1v5xa_           8 ITRLEDALLAEALGAFALG-FVLAPGSRR-------RIAPEAARAIGEALGPFVVRVGVFRDQPPEEVLRLMEEARLQVA   79 (200)
T ss_dssp             CCCHHHHHHHHHHTCSEEE-EECCTTCTT-------BCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHTTCSEE
T ss_pred             CCcHHHHHHHHhCCCCEEE-EEcCCCCCC-------CcCHHHHHHHHHhhcCceeeeeeeeechhhhhhhhhcccccccc
Confidence            4678999999999999973 212222333       34588888887765422 22233333 22343 45667999998


Q ss_pred             eecCCCChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCC-CCCchHHHHHHHHHhhcceecccccCch
Q 037779          119 DESEVLTPADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEA-GTGNIVEAVRHVRSVMGDIRVLRNMDDD  197 (310)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d  197 (310)
                      ..+...++ +..+.+++. +.+.....+.+..... ..+..++++-+.... +++.                        
T Consensus        80 QlHg~e~~-~~~~~l~~~-~~iik~~~~~~~~~~~-~~~~~~~~~L~D~~~~g~g~------------------------  132 (200)
T d1v5xa_          80 QLHGEEPP-EWAEAVGRF-YPVIKAFPLEGPARPE-WADYPAQALLLDGKRPGSGE------------------------  132 (200)
T ss_dssp             EECSCCCH-HHHHHHTTT-SCEEEEEECSSSCCGG-GGGSSCSEEEEECSSTTSCC------------------------
T ss_pred             cccccCCH-HHHHHHhhc-cccceeeccCchhhHH-HhhcchhheeecccccCccc------------------------
Confidence            76544444 444445432 2222222332221111 123456665544221 1111                        


Q ss_pred             hHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCC---CHHHHHHHHHHHHHc
Q 037779          198 EVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSG---DPVRRARAIVQAVTN  274 (310)
Q Consensus       198 ~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~---dp~~~~~~~~~~~~~  274 (310)
                               +.++.+...+.. ...|+  +.+||| +++++.++++.++.||=|.|++=.++   | ...+++|.+.++.
T Consensus       133 ---------~~~~~~~~~~~~-~~~~~--~LAGGl-~~~Nv~~~~~~~p~gvDvsSGvE~~~G~KD-~~ki~~f~~~~~~  198 (200)
T d1v5xa_         133 ---------AYPRAWAKPLLA-TGRRV--ILAGGI-APENLEEVLALRPYALDLASGVEEAPGVKS-AEKLRALFARLAS  198 (200)
T ss_dssp             ---------CCCGGGGHHHHH-TTSCE--EECSSC-CSTTHHHHHHHCCSEEEESGGGEEETTEEC-HHHHHHHHHHHHH
T ss_pred             ---------ccchHHHhhhhh-ccCce--EecCCC-CHHHHHHHHhcCCCEEEEcCceECCCCccC-HHHHHHHHHHHHh
Confidence                     112222222222 24588  459999 59999999999999999999996543   4 4577888877764

>d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.56  E-value=0.00036  Score=58.46  Aligned_cols=43  Identities=21%  Similarity=0.440  Sum_probs=32.7

Q ss_pred             ccCCCCCHH-HHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHH
Q 037779          228 AAGGVATPA-DAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQA  271 (310)
Q Consensus       228 a~GGI~t~~-di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~  271 (310)
                      ..+||+... +..+.+ .|+|.++||++|++++||.+.++++.+.
T Consensus       168 vtpGI~~~g~~~~d~~-~~ad~iIvGR~I~~a~dP~~aa~~i~~~  211 (212)
T d1km4a_         168 ISPGVGAQGGDPGETL-RFADAIIVGRSIYLADNPAAAAAGIIES  211 (212)
T ss_dssp             EECCBSTTSBCHHHHT-TTCSEEEECHHHHTSSSHHHHHHHHHHH
T ss_pred             EcCccccCCCCHHHHH-hhCCEEEECchhccCCCHHHHHHHHHHh
Confidence            469996321 233322 4799999999999999999999998764

>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme A [TaxId: 1358]

Probab=97.51  E-value=2.3e-05  Score=69.66  Aligned_cols=77  Identities=17%  Similarity=0.236  Sum_probs=56.4

Q ss_pred             HHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChhhHHhhhhc
Q 037779          210 YDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCG  287 (310)
Q Consensus       210 ~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (310)
                      ...+..+.+.  .++|+  |+.|||.|++|+.+.+.+||+.|.++|+++... | ..++.+.+.++++.+-..+..+++.
T Consensus       229 l~~i~~i~~~~~~~~~I--ig~GGI~s~~Da~~~i~aGA~~Vql~tal~~~G-p-~~i~~i~~~L~~~m~~~G~~si~e~  304 (311)
T d1juba_         229 LANVRAFYTRLKPEIQI--IGTGGIETGQDAFEHLLCGATMLQIGTALHKEG-P-AIFDRIIKELEEIMNQKGYQSIADF  304 (311)
T ss_dssp             HHHHHHHHTTSCTTSEE--EEESSCCSHHHHHHHHHHTCSEEEECHHHHHHC-T-HHHHHHHHHHHHHHHHHTCCSGGGT
T ss_pred             HHHHHHHHHhcCCCeeE--EecCCcCCHHHHHHHHHcCCCceeeeHhhHhcC-h-HHHHHHHHHHHHHHHHcCCCCHHHh
Confidence            3445555553  35888  678999999999999999999999999997632 2 3566667777766666666666666


Q ss_pred             cCC
Q 037779          288 LGE  290 (310)
Q Consensus       288 ~~~  290 (310)
                      .|.
T Consensus       305 ~G~  307 (311)
T d1juba_         305 HGK  307 (311)
T ss_dssp             TTC
T ss_pred             cCc
Confidence            553

>d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: PcrB protein homolog YerE
species: Bacillus subtilis [TaxId: 1423]

Probab=97.50  E-value=6.6e-05  Score=64.09  Aligned_cols=59  Identities=29%  Similarity=0.365  Sum_probs=42.3

Q ss_pred             cHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779          209 PYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       209 ~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                      +.+....+++. .++|+  ++.+||+|+++++++. .|||||+|||+|.+  ++. ...++.++++
T Consensus       168 ~~~~~~~v~~~~~~~Pl--~VGFGIst~e~a~~v~-~~ADgVVVGSAiv~--~ie-~~~~~~~aik  227 (229)
T d1viza_         168 DIEAVKKTKAVLETSTL--FYGGGIKDAETAKQYA-EHADVIVVGNAVYE--DFD-RALKTVAAVK  227 (229)
T ss_dssp             CHHHHHHHHHTCSSSEE--EEESSCCSHHHHHHHH-TTCSEEEECTHHHH--CHH-HHHTHHHHHH
T ss_pred             cchhHHHHHhhccCcce--EEEcccCCHHHHHHHH-cCCCEEEECHHHHh--hHH-HHHHHHHHhh
Confidence            34555555554 46888  5799999999999987 58999999999987  343 3334555443

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=0.0011  Score=55.72  Aligned_cols=114  Identities=20%  Similarity=0.253  Sum_probs=81.9

Q ss_pred             cceEeeccccch-HHHHHHHHcCCCeeeec-CCCChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHhCCCEEEEecCC
Q 037779           93 IPVMAKARIGHF-VEAQILEAIGVDYVDES-EVLTPADEENHINKHNFRVPFVCG-CRNLGESLRRIREGAAMIRTKGEA  169 (310)
Q Consensus        93 lPv~~kd~i~~~-~~~~~~~~aGad~v~~~-~~~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~Gad~I~v~g~~  169 (310)
                      +||+..+...+. ..++.+.+.|...+-++ ......+.++.++++.+++.++++ +.|.++++++.++|++|+..-+  
T Consensus        18 ipvlr~~~~~~a~~~~~al~~~Gi~~iEitl~tp~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~--   95 (213)
T d1wbha1          18 VPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRTECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPG--   95 (213)
T ss_dssp             EEEECCSSGGGHHHHHHHHHHTTCCEEEEESCSTTHHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEESS--
T ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHHCCCCeeeccccccHHHHHHHHHCCCcEEECCC--
Confidence            466555444322 35578888999998754 222355677777776678888885 8999999999999999987421  


Q ss_pred             CCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEE
Q 037779          170 GTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGV  249 (310)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV  249 (310)
                                                            .+.++++...+ .++|+  +  =|+.|+.++..++++|++.+
T Consensus        96 --------------------------------------~~~~v~~~a~~-~~i~~--i--PGv~TpsEi~~A~~~G~~~v  132 (213)
T d1wbha1          96 --------------------------------------LTEPLLKAATE-GTIPL--I--PGISTVSELMLGMDYGLKEF  132 (213)
T ss_dssp             --------------------------------------CCHHHHHHHHH-SSSCE--E--EEESSHHHHHHHHHTTCCEE
T ss_pred             --------------------------------------CCHHHHHHHHh-cCCCc--c--CCcCCHHHHHHHHHCCCCEE
Confidence                                                  13445555555 46788  4  56779999999999999998


Q ss_pred             EE
Q 037779          250 FV  251 (310)
Q Consensus       250 ~V  251 (310)
                      =+
T Consensus       133 Kl  134 (213)
T d1wbha1         133 KF  134 (213)
T ss_dssp             EE
T ss_pred             Ee
Confidence            65

>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Glycolate oxidase
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.41  E-value=0.00042  Score=62.54  Aligned_cols=95  Identities=25%  Similarity=0.345  Sum_probs=65.2

Q ss_pred             HHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcH
Q 037779          131 NHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPY  210 (310)
Q Consensus       131 ~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~  210 (310)
                      +.+.....+-.++-++.+.+++..+.+.|++.+.+....+.                  .+.            ....+.
T Consensus       217 ~~l~~~~~~~~~~kg~~~~~da~~a~~~g~~~~~vsnhggr------------------~ld------------~~~~~~  266 (359)
T d1goxa_         217 AWLQTITSLPILVKGVITAEDARLAVQHGAAGIIVSNHGAR------------------QLD------------YVPATI  266 (359)
T ss_dssp             HHHHHHCCSCEEEECCCSHHHHHHHHHTTCSEEEECCGGGT------------------SST------------TCCCHH
T ss_pred             HHHHhhcccceeeecccchHHHHHHHHccccceeccccccc------------------ccc------------cccchh
Confidence            44443322334445788999999999999998877532111                  000            012244


Q ss_pred             HHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          211 DLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                      +.+..+.+.  .++||  |++|||.+..|+.+++.+|||.|.+|+.+..
T Consensus       267 ~~l~~i~~~~~~~~~i--iadGGIR~G~Di~KALaLGAd~vgigrp~L~  313 (359)
T d1goxa_         267 MALEEVVKAAQGRIPV--FLDGGVRRGTDVFKALALGAAGVFIGRPVVF  313 (359)
T ss_dssp             HHHHHHHHHTTTSSCE--EEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred             hhchhhhhccCCccce--eeccCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence            555555443  36898  7899999999999999999999999998875

>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]

Probab=97.35  E-value=0.0014  Score=54.95  Aligned_cols=124  Identities=19%  Similarity=0.217  Sum_probs=86.3

Q ss_pred             HHHHHHhhcC-cceEeeccccch-HHHHHHHHcCCCeeeecC-CCChhHHHHHHHhcCCCCcEEee-cCCHHHHHHHHHh
Q 037779           83 LIKQIKSSVT-IPVMAKARIGHF-VEAQILEAIGVDYVDESE-VLTPADEENHINKHNFRVPFVCG-CRNLGESLRRIRE  158 (310)
Q Consensus        83 ~i~~i~~~~~-lPv~~kd~i~~~-~~~~~~~~aGad~v~~~~-~~~~~~~~~~~~~~~~~l~v~~~-v~t~~ea~~a~~~  158 (310)
                      .+.++.+... +||+..+...+. ..++.+.+.|...+-++- .....+.++.++++.+++.++++ +.|.++++.+.++
T Consensus         9 ~i~~~l~~~~iipvl~~~~~~~a~~~~~al~~~Gi~~iEitl~~p~a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~a   88 (216)
T d1mxsa_           9 RIDAICEKARILPVITIAREEDILPLADALAAGGIRTLEVTLRSQHGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAA   88 (216)
T ss_dssp             HHHHHHHHHSEEEEECCSCGGGHHHHHHHHHHTTCCEEEEESSSTHHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHH
T ss_pred             HHHHHHHhCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHHhCCCcceeeeeeecHHHHHHHHhC
Confidence            3444443333 677766554432 356788889999986442 22234666666666678888885 8999999999999


Q ss_pred             CCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHH
Q 037779          159 GAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADA  238 (310)
Q Consensus       159 Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di  238 (310)
                      |++|+..-+                                        .+.+++....+ .++|.  +  =|+.||.++
T Consensus        89 Ga~FivsP~----------------------------------------~~~~v~~~a~~-~~i~~--i--PGv~TpsEi  123 (216)
T d1mxsa_          89 GAQFVVTPG----------------------------------------ITEDILEAGVD-SEIPL--L--PGISTPSEI  123 (216)
T ss_dssp             TCSSEECSS----------------------------------------CCHHHHHHHHH-CSSCE--E--CEECSHHHH
T ss_pred             CCCEEECCC----------------------------------------CcHHHHHHHHh-cCCCc--c--CCcCCHHHH
Confidence            999977421                                        13445555554 46788  4  677799999


Q ss_pred             HHHHHcCCCEEEE
Q 037779          239 AMMMQLGCDGVFV  251 (310)
Q Consensus       239 ~~~~~~GadgV~V  251 (310)
                      ..++++|++.|=+
T Consensus       124 ~~A~~~G~~~vKl  136 (216)
T d1mxsa_         124 MMGYALGYRRFKL  136 (216)
T ss_dssp             HHHHTTTCCEEEE
T ss_pred             HHHHHCCCCEEEe
Confidence            9999999999865

>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=4.4e-05  Score=69.61  Aligned_cols=75  Identities=17%  Similarity=0.258  Sum_probs=55.6

Q ss_pred             HHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc-cCCCHHHHHHHHHHHHHcCCChhhHHhhhh
Q 037779          210 YDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF-KSGDPVRRARAIVQAVTNYSDPDVLAEVSC  286 (310)
Q Consensus       210 ~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~-~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~  286 (310)
                      ...++.+.+.  .++|+  |+.|||.|++|+.+.+.+||+.|.++|+++ +.+   ..++.+.+.+..|.+...+..+.+
T Consensus       285 l~~v~~v~~~~~~~ipI--ig~GGI~s~~Da~e~i~aGAs~VQi~Ta~~~~Gp---~ii~~I~~~L~~~l~~~G~~si~d  359 (367)
T d1d3ga_         285 TQTIREMYALTQGRVPI--IGVGGVSSGQDALEKIRAGASLVQLYTALTFWGP---PVVGKVKRELEALLKEQGFGGVTD  359 (367)
T ss_dssp             HHHHHHHHHHTTTCSCE--EEESSCCSHHHHHHHHHHTCSEEEESHHHHHHCT---HHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred             HHHHHHHHHHhCCCccE--EEECCCCCHHHHHHHHHcCCCHHHhhHHHHhcCc---HHHHHHHHHHHHHHHHcCCCCHHH
Confidence            4445555443  36899  677999999999999999999999999975 443   355666677776666666666666


Q ss_pred             ccC
Q 037779          287 GLG  289 (310)
Q Consensus       287 ~~~  289 (310)
                      ..|
T Consensus       360 l~G  362 (367)
T d1d3ga_         360 AIG  362 (367)
T ss_dssp             HTT
T ss_pred             hcC
Confidence            555

>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.31  E-value=4.7e-05  Score=70.59  Aligned_cols=76  Identities=14%  Similarity=0.201  Sum_probs=56.3

Q ss_pred             HHHHHHHHhcC--CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc-cCCCHHHHHHHHHHHHHcCCChhhHHhhhh
Q 037779          210 YDLVMQTKQLG--RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF-KSGDPVRRARAIVQAVTNYSDPDVLAEVSC  286 (310)
Q Consensus       210 ~~l~~~i~~~~--~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~-~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~  286 (310)
                      ...+.++.+..  ++|+  |+.|||.|++|+.+.+.+||+.|.|+|+++ +.+.   .++++.+.+.++.+...+..+++
T Consensus       329 l~~v~~v~~~~~~~ipI--IGvGGI~s~~Da~e~i~AGAs~VQv~T~li~~Gp~---~v~~I~~~L~~~l~~~g~~~i~e  403 (409)
T d1tv5a1         329 TKFICEMYNYTNKQIPI--IASGGIFSGLDALEKIEAGASVCQLYSCLVFNGMK---SAVQIKRELNHLLYQRGYYNLKE  403 (409)
T ss_dssp             HHHHHHHHHHTTTCSCE--EEESSCCSHHHHHHHHHTTEEEEEESHHHHHHGGG---HHHHHHHHHHHHHHHHTCSSSGG
T ss_pred             HHHHHHHHHHcCCCceE--EEECCCCCHHHHHHHHHcCCCHHhhhhHHHhcChH---HHHHHHHHHHHHHHHcCCCCHHH
Confidence            45566665543  5899  667999999999999999999999999975 4333   45666666666666666666666


Q ss_pred             ccCC
Q 037779          287 GLGE  290 (310)
Q Consensus       287 ~~~~  290 (310)
                      ..|.
T Consensus       404 ~iG~  407 (409)
T d1tv5a1         404 AIGR  407 (409)
T ss_dssp             GTTT
T ss_pred             hcCC
Confidence            6554

>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Flavocytochrome b2, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.28  E-value=0.00065  Score=62.63  Aligned_cols=98  Identities=21%  Similarity=0.311  Sum_probs=64.8

Q ss_pred             HHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCC
Q 037779          129 EENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAA  208 (310)
Q Consensus       129 ~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~  208 (310)
                      .++.+.....+-.++..+.+.+++..+.+.|++.+.+.++.+..                  +...            ..
T Consensus       237 ~i~~i~~~~~~~~i~kgi~~~~da~~~~~~G~~~i~vsnhggr~------------------~d~~------------~~  286 (414)
T d1kbia1         237 DIEELKKKTKLPIVIKGVQRTEDVIKAAEIGVSGVVLSNHGGRQ------------------LDFS------------RA  286 (414)
T ss_dssp             HHHHHHHHCSSCEEEEEECSHHHHHHHHHTTCSEEEECCTTTTS------------------STTC------------CC
T ss_pred             HHHHHhccCCceEEeeccchhHHHHHHHhcCCcceeeccccccc------------------cccc------------cc
Confidence            34445443333445557888999999999999988776442211                  0000            01


Q ss_pred             cH----HHHHHHHh--c-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC
Q 037779          209 PY----DLVMQTKQ--L-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       209 ~~----~l~~~i~~--~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~  258 (310)
                      +.    +....+..  . .++||  |++|||.+.-|+.+++.+||++|.+|+.+..+
T Consensus       287 ~~~~l~~i~~~~~~~~v~~~~~v--iadGGIR~G~DVaKALALGAdaVgigrp~L~~  341 (414)
T d1kbia1         287 PIEVLAETMPILEQRNLKDKLEV--FVDGGVRRGTDVLKALCLGAKGVGLGRPFLYA  341 (414)
T ss_dssp             HHHHHHHHHHHHHTTTCBTTBEE--EEESSCCSHHHHHHHHHHTCSEEEECHHHHHH
T ss_pred             cccchhhhhhhhhhhccCCceeE--EecCCcCcHHHHHHHHHcCCCEEEEcHHHHHH
Confidence            11    12222211  1 35788  78999999999999999999999999988864

>d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.24  E-value=0.0016  Score=55.33  Aligned_cols=37  Identities=24%  Similarity=0.414  Sum_probs=34.0

Q ss_pred             HHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          238 AAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       238 i~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      ..++++.|+|-++||++|++++||.+.++++++.++.
T Consensus       200 p~~a~~~GaD~iIVGR~I~~s~dP~~aa~~i~~~ie~  236 (237)
T d1dbta_         200 PAIAREKGSSAIVVGRSITKAEDPVKAYKAVRLEWEG  236 (237)
T ss_dssp             HHHHHHTTCSEEEECHHHHTSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCEEEECCcccCCCCHHHHHHHHHHHHcC
Confidence            5678899999999999999999999999999998863

>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.23  E-value=9.7e-05  Score=62.99  Aligned_cols=44  Identities=27%  Similarity=0.564  Sum_probs=34.7

Q ss_pred             HHHHHHHh-cCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcccccc
Q 037779          211 DLVMQTKQ-LGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       211 ~l~~~i~~-~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~  257 (310)
                      +.+..+++ ..++|+  ++.+||+|+++++++.+ +||||+|||+|.+
T Consensus       176 ~~~~~~~k~~~~~Pv--~VGFGI~s~e~a~~~~~-~ADgvIVGSaive  220 (231)
T d2f6ua1         176 ELVAEVKKVLDKARL--FYGGGIDSREKAREMLR-YADTIIVGNVIYE  220 (231)
T ss_dssp             HHHHHHHHHCSSSEE--EEESCCCSHHHHHHHHH-HSSEEEECHHHHH
T ss_pred             hHHHHHHHhcCCCCE--EEEeCcCCHHHHHHHHh-cCCEEEEChHHhc
Confidence            33344444 356899  56999999999999887 6999999999965

>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Morphinone reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.22  E-value=0.0029  Score=57.31  Aligned_cols=53  Identities=19%  Similarity=0.133  Sum_probs=43.4

Q ss_pred             HHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHHH
Q 037779          212 LVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRARA  267 (310)
Q Consensus       212 l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~~  267 (310)
                      +...+++..++||  ++.|+| +++.+.++++.| ||.|.+|++++..++...++++
T Consensus       287 ~~~~i~~~~~~pv--i~~G~i-~~~~ae~~l~~g~aDlV~~gR~~iadPd~~~K~~~  340 (374)
T d1gwja_         287 FREQMRQRFKGGL--IYCGNY-DAGRAQARLDDNTADAVAFGRPFIANPDLPERFRL  340 (374)
T ss_dssp             HHHHHHHHCCSEE--EEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHHH
T ss_pred             HHHHHHHHcCCCE--EEECCc-CHHHHHHHHHcCCCcEehhhHHHHHCccHHHHHHc
Confidence            4566777778899  567999 799999999886 9999999999998887655443

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=97.19  E-value=0.0018  Score=57.87  Aligned_cols=123  Identities=22%  Similarity=0.307  Sum_probs=79.9

Q ss_pred             cCcceEee--ccccchHHHHHHHHcCCCeeeecCCCChhHHHHHHHh-cCCCCc----EEeecCCHHHHHHHHHhCCCEE
Q 037779           91 VTIPVMAK--ARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINK-HNFRVP----FVCGCRNLGESLRRIREGAAMI  163 (310)
Q Consensus        91 ~~lPv~~k--d~i~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~-~~~~l~----v~~~v~t~~ea~~a~~~Gad~I  163 (310)
                      .++|++.-  |.+..++.+..+.++|.=.++ +...++.+..+.++. +..+..    +.+...+.+.+....+.|+|++
T Consensus        36 ~~iPIIaa~MdtV~~~~mA~als~~GGlGvi-~r~~~~e~~~~~i~~vk~~~~~v~~~vgv~~~~~e~~~~li~agvd~i  114 (330)
T d1vrda1          36 INIPLVSAAMDTVTEAALAKALAREGGIGII-HKNLTPDEQARQVSIVKKTRLLVGAAVGTSPETMERVEKLVKAGVDVI  114 (330)
T ss_dssp             ESSSEEECCCTTTCSHHHHHHHHTTTCEEEE-CSSSCHHHHHHHHHHHHTCCBCCEEEECSSTTHHHHHHHHHHTTCSEE
T ss_pred             cCCCEEeCCCCCcCCHHHHHHHHHCCCeEEe-ecccchhhhHHHHHHHhhhccEEEEEEecCHHHHHHHHHHHHCCCCEE
Confidence            46898874  556666777777778887775 334466666655544 333333    3333345666677778999998


Q ss_pred             EEecC-CCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHH
Q 037779          164 RTKGE-AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMM  241 (310)
Q Consensus       164 ~v~g~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~  241 (310)
                      .+... .+..+                                   ..+.++.+++. .++||+   .|.+.|++.+..+
T Consensus       115 vId~A~G~~~~-----------------------------------~~~~ik~ik~~~~~~~vi---aGnV~t~~~a~~l  156 (330)
T d1vrda1         115 VIDTAHGHSRR-----------------------------------VIETLEMIKADYPDLPVV---AGNVATPEGTEAL  156 (330)
T ss_dssp             EECCSCCSSHH-----------------------------------HHHHHHHHHHHCTTSCEE---EEEECSHHHHHHH
T ss_pred             EEecCCCCchh-----------------------------------HHHHHHHHHHhCCCCCEE---eechhHHHHHHHH
Confidence            87521 11111                                   12334444443 467885   4999999999999


Q ss_pred             HHcCCCEEEEc
Q 037779          242 MQLGCDGVFVG  252 (310)
Q Consensus       242 ~~~GadgV~VG  252 (310)
                      +++|||+|.||
T Consensus       157 ~~~GaD~v~VG  167 (330)
T d1vrda1         157 IKAGADAVKVG  167 (330)
T ss_dssp             HHTTCSEEEEC
T ss_pred             HHcCCCEEeec
Confidence            99999999996

>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermus thermophilus [TaxId: 274]

Probab=97.19  E-value=0.0021  Score=53.68  Aligned_cols=32  Identities=34%  Similarity=0.458  Sum_probs=26.3

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccc
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG  254 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsa  254 (310)
                      ++.|-  ++|||.|.+++.+++++|++-+...|+
T Consensus       175 ~~~iK--asGGIrt~~~a~~~l~aGa~riGtSs~  206 (211)
T d1ub3a_         175 RAQVK--AAGGIRDRETALRMLKAGASRLGTSSG  206 (211)
T ss_dssp             SSEEE--EESSCCSHHHHHHHHHTTCSEEEETTH
T ss_pred             CceEE--CcCCCCCHHHHHHHHHHhhhHhccCcH
Confidence            45664  589999999999999999997766554

>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

Probab=97.11  E-value=0.00042  Score=61.88  Aligned_cols=83  Identities=16%  Similarity=0.297  Sum_probs=65.3

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHH-----------HHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCC
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPAD-----------AAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSD  277 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~d-----------i~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~  277 (310)
                      ..++++.+.+...+|+  .+.|||.|.+|           +++++++|||-|++||+.++.++      -+.+....+.+
T Consensus        83 ~~~~I~~i~~~~~vPi--~vGGGIrsi~di~~~~~~~~e~A~~ll~~GadKVvI~T~ai~~p~------~~~e~~~~~~n  154 (323)
T d1jvna1          83 MLEVLKQAAKTVFVPL--TVGGGIKDIVDVDGTKIPALEVASLYFRSGADKVSIGTDAVYAAE------KYYELGNRGDG  154 (323)
T ss_dssp             HHHHHHHHTTTCCSCE--EEESSCSCEECTTCCEECHHHHHHHHHHHTCSEEEECHHHHHHHH------HHHHTTSCCCS
T ss_pred             HHHHHHhhccccceeE--EEecCcccHHHhhhccchhhHHHHHHHHcCCCeEEechHHhhChH------HHHHHHhhccc
Confidence            4677888877788999  56999999765           68999999999999999887332      23344456789


Q ss_pred             hhhHHhhhhccCC--ceecccccc
Q 037779          278 PDVLAEVSCGLGE--AMVGIDLND  299 (310)
Q Consensus       278 ~~~~~~~~~~~~~--~~~~~~~~~  299 (310)
                      |..+.+++..||.  ...+||+..
T Consensus       155 ~~li~~i~~~fGsq~IvvsiD~k~  178 (323)
T d1jvna1         155 TSPIETISKAYGAQAVVISVDPKR  178 (323)
T ss_dssp             CSHHHHHHHHHCGGGEEEEECEEE
T ss_pred             chhHHHHHHHhCCceEEEEEEEEe
Confidence            9999999999984  567777654

>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.09  E-value=0.0033  Score=53.04  Aligned_cols=32  Identities=34%  Similarity=0.514  Sum_probs=27.0

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccc
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG  254 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsa  254 (310)
                      ++.|  =++|||.|.+++.+++++|++-+...|+
T Consensus       175 ~~~i--KasGGIrt~~~a~~~i~~Ga~RiGtSs~  206 (225)
T d1mzha_         175 RIKV--KASGGIRDLETAISMIEAGADRIGTSSG  206 (225)
T ss_dssp             SSEE--EEESSCCSHHHHHHHHHTTCSEEEESCH
T ss_pred             CceE--ECcCCCCCHHHHHHHHHhchhheecCcH
Confidence            4677  3589999999999999999998776664

>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.02  E-value=0.018  Score=48.54  Aligned_cols=158  Identities=18%  Similarity=0.169  Sum_probs=85.4

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEe--eccccc------hHHHHHHHHcCCCe
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMA--KARIGH------FVEAQILEAIGVDY  117 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~--kd~i~~------~~~~~~~~~aGad~  117 (310)
                      ++++.+.+.|+.++.+.      + .+        ...+++..+.+++.+..  +.-.|.      ..+++.+.+.|||-
T Consensus        40 ~lc~~A~~~~~~avcV~------p-~~--------v~~a~~~l~~s~v~v~tVigFP~G~~~~~~k~~E~~~Ai~~GAdE  104 (234)
T d1n7ka_          40 NLVREASDYGFRCAVLT------P-VY--------TVKISGLAEKLGVKLCSVIGFPLGQAPLEVKLVEAQTVLEAGATE  104 (234)
T ss_dssp             HHHHHHHHHTCSEEEEC------H-HH--------HHHHHHHHHHHTCCEEEEESTTTCCSCHHHHHHHHHHHHHHTCCE
T ss_pred             HHHHHHHHhCCeEEEEC------c-Hh--------HHHHHHHhhcCCCceEEEEecCCCCCcHHHHHHHHHHHHHcCCCe
Confidence            45677777788887432      1 11        33444444444444332  222231      24567778899998


Q ss_pred             eeec-C--CCC------hhHHHHHHHhcCCCCcEEeec--CCHHHHHHH----HHhCCCEEEEe-cCCCCCchHHHHHHH
Q 037779          118 VDES-E--VLT------PADEENHINKHNFRVPFVCGC--RNLGESLRR----IREGAAMIRTK-GEAGTGNIVEAVRHV  181 (310)
Q Consensus       118 v~~~-~--~~~------~~~~~~~~~~~~~~l~v~~~v--~t~~ea~~a----~~~Gad~I~v~-g~~~~~~~~~~~~~~  181 (310)
                      |... +  ...      ..++.+.....+.-+.++.++  -+.++..++    .+.|+|||++. |....+         
T Consensus       105 ID~Vin~~~~~~~~~~ev~~~~~~~~~~g~~lKVIlEt~~L~~~~i~~a~~~a~~aGadFVKTSTG~~~~g---------  175 (234)
T d1n7ka_         105 LDVVPHLSLGPEAVYREVSGIVKLAKSYGAVVKVILEAPLWDDKTLSLLVDSSRRAGADIVKTSTGVYTKG---------  175 (234)
T ss_dssp             EEECCCGGGCHHHHHHHHHHHHHHHHHTTCEEEEECCGGGSCHHHHHHHHHHHHHTTCSEEESCCSSSCCC---------
T ss_pred             EEEEechhhhhhhhHHHHHHHHHHHhccCceEEEEEeccccchHHHHHHHHHHHHhhhhheeecccccCCC---------
Confidence            7622 1  000      112222223333336677663  355555544    46899999986 321111         


Q ss_pred             HHhhcceecccccCchhHHhhhccCCCcHHHHHHH--HhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccc
Q 037779          182 RSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQT--KQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSG  254 (310)
Q Consensus       182 ~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i--~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsa  254 (310)
                                               ..+.+.....  ....++.|-  ++|||.|.+++.+++++|++-+...|+
T Consensus       176 -------------------------at~~~~~~l~~~~~~~~vgIK--asGGIrt~~~a~~~i~aGa~rIGtSs~  223 (234)
T d1n7ka_         176 -------------------------GDPVTVFRLASLAKPLGMGVK--ASGGIRSGIDAVLAVGAGADIIGTSSA  223 (234)
T ss_dssp             -------------------------CSHHHHHHHHHHHGGGTCEEE--EESSCCSHHHHHHHHHTTCSEEEETTH
T ss_pred             -------------------------CCHHHHHHHHHHhcCCCCcEE--eeCCcCCHHHHHHHHHccCceeecchH
Confidence                                     0111221111  111246774  589999999999999999997665553

>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.00  E-value=0.0036  Score=53.62  Aligned_cols=31  Identities=35%  Similarity=0.475  Sum_probs=25.1

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs  253 (310)
                      ++.|-  ++|||.|.+++.+++++|++-+...|
T Consensus       208 ~~giK--asGGIrt~~~a~~~i~aGa~riGtSs  238 (251)
T d1o0ya_         208 EMGVK--ASGGIRTFEDAVKMIMYGADRIGTSS  238 (251)
T ss_dssp             TSEEE--EESSCCSHHHHHHHHHTTCSEEEESC
T ss_pred             CceEe--ccCCcCCHHHHHHHHHHhhHHhCCCc
Confidence            45663  58999999999999999999765443

>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=96.97  E-value=0.00015  Score=64.32  Aligned_cols=77  Identities=17%  Similarity=0.124  Sum_probs=55.9

Q ss_pred             HHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChhhHHhhhhcc
Q 037779          210 YDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVLAEVSCGL  288 (310)
Q Consensus       210 ~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (310)
                      .+.+..+.+. ...|+  |+.|||.|++|+.+.+.+||+.|.++|+++...  ...++++.+.+.++.+...+..+++..
T Consensus       230 l~~v~~~~~~~~~~~I--ig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~~G--p~~i~~i~~~L~~~l~~~G~~si~e~~  305 (312)
T d2b4ga1         230 LANVNAFFRRCPDKLV--FGCGGVYSGEEAFLHILAGASMVQVGTALHDEG--PIIFARLNKELQEIMTNKGYKTLDEFR  305 (312)
T ss_dssp             HHHHHHHHHHCTTSEE--EEESSCCSHHHHHHHHHHTEEEEEESHHHHHHC--TTHHHHHHHHHHHHHHHHTCCSGGGTT
T ss_pred             hHHHHHHHHHcCCCce--eecCCcCCHHHHHHHHHcCCChheeehhhHhcC--cHHHHHHHHHHHHHHHHcCCCCHHHHc
Confidence            4455555443 34555  688999999999999999999999999987532  134566666666666667777777766


Q ss_pred             CC
Q 037779          289 GE  290 (310)
Q Consensus       289 ~~  290 (310)
                      |.
T Consensus       306 G~  307 (312)
T d2b4ga1         306 GR  307 (312)
T ss_dssp             TC
T ss_pred             Ce
Confidence            64

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.93  E-value=0.0029  Score=52.51  Aligned_cols=114  Identities=14%  Similarity=0.153  Sum_probs=77.0

Q ss_pred             cceEeeccccch-HHHHHHHHcCCCeeeec-CCCChhHHHHHHHh-cCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEecC
Q 037779           93 IPVMAKARIGHF-VEAQILEAIGVDYVDES-EVLTPADEENHINK-HNFRVPFVC-GCRNLGESLRRIREGAAMIRTKGE  168 (310)
Q Consensus        93 lPv~~kd~i~~~-~~~~~~~~aGad~v~~~-~~~~~~~~~~~~~~-~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~g~  168 (310)
                      +||+..+-..+. ..++.+.+.|.+.+-++ ......+.++.+++ +++++.+.+ ++.|.++++.+.++|++++..  +
T Consensus        12 ipvlr~~~~~~a~~~~~al~~~Gi~~iEitlr~p~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~aGa~fivs--P   89 (202)
T d1wa3a1          12 VAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIVS--P   89 (202)
T ss_dssp             EEEECCSSHHHHHHHHHHHHHTTCCEEEEETTSTTHHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEEEC--S
T ss_pred             EEEEECCCHHHHHHHHHHHHHcCCCEEEEecCCccHHHHHHHHHHhcCCCcEEEecccccHHHHHHHHhhcccEEeC--C
Confidence            466554333221 34577788999998643 22233455555554 456788887 589999999999999999863  1


Q ss_pred             CCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCE
Q 037779          169 AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDG  248 (310)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~Gadg  248 (310)
                      .                                      .+.++++...+ ..+|+  +  =|+.|+.++.+++++|++.
T Consensus        90 ~--------------------------------------~~~~v~~~~~~-~~i~~--i--PGv~TpsEi~~A~~~G~~~  126 (202)
T d1wa3a1          90 H--------------------------------------LDEEISQFCKE-KGVFY--M--PGVMTPTELVKAMKLGHTI  126 (202)
T ss_dssp             S--------------------------------------CCHHHHHHHHH-HTCEE--E--CEECSHHHHHHHHHTTCCE
T ss_pred             C--------------------------------------CcHHHHHHHHh-cCCce--e--CCcCcHHHHHHHHHCCCCE
Confidence            1                                      12344444444 25677  4  6778999999999999999


Q ss_pred             EEE
Q 037779          249 VFV  251 (310)
Q Consensus       249 V~V  251 (310)
                      +-+
T Consensus       127 lK~  129 (202)
T d1wa3a1         127 LKL  129 (202)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            987

>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.81  E-value=0.0004  Score=62.20  Aligned_cols=45  Identities=24%  Similarity=0.413  Sum_probs=37.0

Q ss_pred             HHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc
Q 037779          210 YDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF  256 (310)
Q Consensus       210 ~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~  256 (310)
                      .+.+.++.+.  .++|+  |..|||.|++|+.+.+.+||+.|.|||+++
T Consensus       276 l~~v~~v~~~~~~~ipI--IG~GGI~s~~Da~e~i~aGAsaVQv~Tal~  322 (336)
T d1f76a_         276 TEIIRRLSLELNGRLPI--IGVGGIDSVIAAREKIAAGASLVQIYSGFI  322 (336)
T ss_dssp             HHHHHHHHHHHTTSSCE--EEESSCCSHHHHHHHHHHTCSEEEESHHHH
T ss_pred             HHHHHHHHHHcCCCCeE--EEECCCCCHHHHHHHHHcCCcHHHHHHHHH
Confidence            3445555553  36899  678999999999999999999999999975

>d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Tagatose-1,6-bisphosphate aldolase
species: Escherichia coli [TaxId: 562]

Probab=96.80  E-value=0.086  Score=45.51  Aligned_cols=186  Identities=12%  Similarity=0.112  Sum_probs=113.8

Q ss_pred             HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CCC
Q 037779           47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EVL  124 (310)
Q Consensus        47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~~  124 (310)
                      ..+++++..+..|.++.  +...++++ ..  .-...++.+.+..++||.++ |.-.+++.++.+..+|-+.|-++ +.+
T Consensus        33 vi~AAe~~~sPvIlq~~--~~~~~~~~-~~--~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~ai~~GftSVMiD~S~l  107 (284)
T d1gvfa_          33 ILEVCSEMRSPVILAGT--PGTFKHIA-LE--EIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHF  107 (284)
T ss_dssp             HHHHHHHHTCCCEEEEC--TTHHHHSC-HH--HHHHHHHHHHHHTTSCBEEEEEEECCHHHHHHHHHTTCCEEEECCTTS
T ss_pred             HHHHHHHHCCCEEEEcC--HhHHhhCC-HH--HHHHHHHHHHHhcCCeEEeeeccccchHHHHHHHhcCCCeEEEECCCC
Confidence            46667777888775552  12222222 10  01234556667789999886 44445678888999999988743 233


Q ss_pred             ChhH-------HHHHHHhcCCCCcEEee-------------------cCCHHHHHHHH-HhCCCEEEEe-cCCCCCchHH
Q 037779          125 TPAD-------EENHINKHNFRVPFVCG-------------------CRNLGESLRRI-REGAAMIRTK-GEAGTGNIVE  176 (310)
Q Consensus       125 ~~~~-------~~~~~~~~~~~l~v~~~-------------------v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~~  176 (310)
                      +.++       +.+..++.+  +.+=.+                   .++++|++.-. +.|+|.+.+. |..++..   
T Consensus       108 p~eeNi~~t~~vv~~ah~~g--v~VE~ElG~v~g~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y---  182 (284)
T d1gvfa_         108 PFAENVKLVKSVVDFCHSQD--CSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLY---  182 (284)
T ss_dssp             CHHHHHHHHHHHHHHHHHTT--CEEEEEESCCC-----------CCSSCCHHHHHHHHHHHCCSEEEECSSCCSSCC---
T ss_pred             CHHHHHHHHHHHHHHHHhhc--cceeeeeeeeccccccccccccccccCCHHHHHHHHHHhCCCEEeeecCceeecc---
Confidence            4332       333333332  221111                   24677777655 5688888765 4332210   


Q ss_pred             HHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccc
Q 037779          177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVF  256 (310)
Q Consensus       177 ~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~  256 (310)
                                     +.           ...-++++++.+.+..++|+|.=-.+|+ +.++++++.+.|..-|=++|.+-
T Consensus       183 ---------------~~-----------~p~l~~~~L~~i~~~~~vPLVlHGgSG~-~~e~i~~ai~~Gi~KiNi~T~l~  235 (284)
T d1gvfa_         183 ---------------SK-----------TPKIDFQRLAEIREVVDVPLVLHGASDV-PDEFVRRTIELGVTKVNVATELK  235 (284)
T ss_dssp             ---------------SS-----------CCCCCHHHHHHHHHHCCSCEEECCCTTC-CHHHHHHHHHTTEEEEEECHHHH
T ss_pred             ---------------CC-----------CCccccchhhhhhccccCCeEeeCCCCC-CHHHHHHHHHcCeEEEEechHHH
Confidence                           00           0123678889998888999976666677 47889999999999999999876


Q ss_pred             cCCCHHHHHHHHHHHHHc
Q 037779          257 KSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       257 ~~~dp~~~~~~~~~~~~~  274 (310)
                      .     ...+.+++.+.+
T Consensus       236 ~-----a~~~~~~~~l~~  248 (284)
T d1gvfa_         236 I-----AFAGAVKAWFAE  248 (284)
T ss_dssp             H-----HHHHHHHHHHHH
T ss_pred             H-----HHHHHHHHHHHh
Confidence            5     344455555544

>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: HpcH/HpaI aldolase
domain: 2-dehydro-3-deoxy-galactarate aldolase
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.018  Score=49.15  Aligned_cols=84  Identities=15%  Similarity=0.024  Sum_probs=55.9

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHH---HhhcCcceEeeccccchHHHHHHHHcCCCe
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQI---KSSVTIPVMAKARIGHFVEAQILEAIGVDY  117 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i---~~~~~lPv~~kd~i~~~~~~~~~~~aGad~  117 (310)
                      ...++..++.+..+|.|++ .+     |.-  +|..   +.+.+..+   .+..+++.+++..-.....++.+.++||+.
T Consensus        23 ~~~~p~~~ei~a~~G~Dfv-~i-----D~E--Hg~~---~~~~~~~~i~a~~~~g~~~~VRvp~~~~~~i~~~LD~Ga~G   91 (253)
T d1dxea_          23 ALSNPISTEVLGLAGFDWL-VL-----DGE--HAPN---DISTFIPQLMALKGSASAPVVRVPTNEPVIIKRLLDIGFYN   91 (253)
T ss_dssp             CSCSHHHHHHHTTSCCSEE-EE-----ESS--SSSC---CHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHHHHTTCCE
T ss_pred             cCCCHHHHHHHHcCCCCEE-EE-----ecc--cCCC---ChhHHHHHHHHHhccCCCceecCCCCCHHHHHHHHhcCccE
Confidence            4567999999999999998 33     221  2221   13444333   234466666654444556788999999999


Q ss_pred             eeecCCCChhHHHHHHHh
Q 037779          118 VDESEVLTPADEENHINK  135 (310)
Q Consensus       118 v~~~~~~~~~~~~~~~~~  135 (310)
                      |+.+..-+.++..+.++.
T Consensus        92 IivP~v~s~eea~~~v~~  109 (253)
T d1dxea_          92 FLIPFVETKEEAELAVAS  109 (253)
T ss_dssp             EEESCCCSHHHHHHHHHT
T ss_pred             EEecccCCHHHHHHHHHh
Confidence            998877777777776654

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=96.62  E-value=0.0022  Score=54.83  Aligned_cols=50  Identities=26%  Similarity=0.385  Sum_probs=43.3

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD  260 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d  260 (310)
                      ..++++.+.+...+|+.  +.|||.+.++++++++.||+-|++||..++.++
T Consensus        62 ~~~~i~~i~~~~~~pi~--vgGGIrs~e~~~~ll~~Ga~kVii~s~~~~n~~  111 (251)
T d1ka9f_          62 LLDVVARVAERVFIPLT--VGGGVRSLEDARKLLLSGADKVSVNSAAVRRPE  111 (251)
T ss_dssp             HHHHHHHHHTTCCSCEE--EESSCCSHHHHHHHHHHTCSEEEECHHHHHCTH
T ss_pred             HHHHHHHHHhccCcchh--eeccccCHHHHHHHHHcCCCEEEECchhhhCHH
Confidence            45677888777788994  589999999999999999999999999988554

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.45  E-value=0.016  Score=52.08  Aligned_cols=169  Identities=16%  Similarity=0.230  Sum_probs=95.7

Q ss_pred             cCcceEee--ccccchHHHHHHHHcCCCeeeecCCCChhHHHHHHHh---cCCCCcEEeec----CCHHHHHHHHHhCCC
Q 037779           91 VTIPVMAK--ARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINK---HNFRVPFVCGC----RNLGESLRRIREGAA  161 (310)
Q Consensus        91 ~~lPv~~k--d~i~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~---~~~~l~v~~~v----~t~~ea~~a~~~Gad  161 (310)
                      .++||+.-  |-+...+.+..+..+|.=.++ +...++.+..+....   ....+.+.+.+    .+.+.+....+.|+|
T Consensus        43 ~~iPIIsA~MDtV~~~~mA~~ls~~Gglgvl-hr~~~~~e~~~~~~~~~~~~~~~~v~aavGv~~~~~er~~~l~~agvd  121 (365)
T d1zfja1          43 LNIPIITAAMDTVTGSKMAIAIARAGGLGVI-HKNMSITEQAEEVRKVKRSEGRLLVAAAVGVTSDTFERAEALFEAGAD  121 (365)
T ss_dssp             ESSSEEECCCTTTCSHHHHHHHHHTTCEEEE-CCSSCHHHHHHHHHHHHHHTSCBCCEEEECSSTTHHHHHHHHHHHTCS
T ss_pred             cCCCEEECCCCCcCCHHHHHHHHHCCCceEE-cCccCHHHHHHHhhhhhhccCceEEEEEeccCchHHHHHHHHHHcCCC
Confidence            46898874  556666777777778877764 333345554444432   11223333332    233445566788999


Q ss_pred             EEEEecC-CCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHHHH
Q 037779          162 MIRTKGE-AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPADAA  239 (310)
Q Consensus       162 ~I~v~g~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~  239 (310)
                      ++.+... .+...                                   -.+.++.+++. .++||+   .|++.|++.+.
T Consensus       122 ~ivID~A~G~s~~-----------------------------------~~~~i~~ik~~~~~~~iI---aGNV~T~e~a~  163 (365)
T d1zfja1         122 AIVIDTAHGHSAG-----------------------------------VLRKIAEIRAHFPNRTLI---AGNIATAEGAR  163 (365)
T ss_dssp             EEEECCSCTTCHH-----------------------------------HHHHHHHHHHHCSSSCEE---EEEECSHHHHH
T ss_pred             EEEEECCcccccc-----------------------------------hhHHHHHHHhhCCCccee---ecccccHHHHH
Confidence            9987521 11110                                   12234444443 467884   49999999999


Q ss_pred             HHHHcCCCEEEEcc---ccccC------CCHH-HHHHHHHHHHHcCCC----------h-hhHHhhhhccCCceeccccc
Q 037779          240 MMMQLGCDGVFVGS---GVFKS------GDPV-RRARAIVQAVTNYSD----------P-DVLAEVSCGLGEAMVGIDLN  298 (310)
Q Consensus       240 ~~~~~GadgV~VGs---ai~~~------~dp~-~~~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~~~~  298 (310)
                      .+++.|||+|.||-   .++.+      .-|. ..+.+.....+.+.-          + ++...++...-..|+|--|.
T Consensus       164 ~L~~aGaD~VkVGiG~Gs~CTTr~~tGvGvPq~sai~~~~~~~~~~~~~iIADGGi~~~GDi~KAla~GAd~VMlG~~lA  243 (365)
T d1zfja1         164 ALYDAGVDVVKVGIGPGSICTTRVVAGVGVPQVTAIYDAAAVAREYGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFA  243 (365)
T ss_dssp             HHHHTTCSEEEECSSCCTTBCHHHHTCCCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTT
T ss_pred             HHHhcCCceEEeeecccccccCcceeeeeccchhHHHHHHHHHHhCCceEEecCCcCcchhhhhhhhccCCEEEecchhc
Confidence            99999999999984   22211      1121 122222233333322          2 55566777666777776664

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=96.43  E-value=0.0024  Score=54.72  Aligned_cols=50  Identities=18%  Similarity=0.293  Sum_probs=43.3

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD  260 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d  260 (310)
                      ..+++..+.+...+|+  ...|||.+.+++..++..||+-|++||..++.++
T Consensus        62 ~~~~i~~i~~~~~~pi--~vgGGIr~~e~i~~~l~~Ga~kviigs~~~~n~~  111 (253)
T d1thfd_          62 MLELVEKVAEQIDIPF--TVGGGIHDFETASELILRGADKVSINTAAVENPS  111 (253)
T ss_dssp             HHHHHHHHHTTCCSCE--EEESSCCSHHHHHHHHHTTCSEEEESHHHHHCTH
T ss_pred             HHHHHHHHHhccCccc--eeecccccchhhhhHHhcCCCEEEEChHHhhChH
Confidence            4667788877778999  4599999999999999999999999999998543

>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Azospirillum brasilense [TaxId: 192]

Probab=96.31  E-value=0.015  Score=56.87  Aligned_cols=118  Identities=18%  Similarity=0.254  Sum_probs=74.2

Q ss_pred             cCCCeee---ecCCCChhHHHHHHHh---cCCCCcEEeec---CCHHHH-HHHHHhCCCEEEEecC-CCCCchH-HHHHH
Q 037779          113 IGVDYVD---ESEVLTPADEENHINK---HNFRVPFVCGC---RNLGES-LRRIREGAAMIRTKGE-AGTGNIV-EAVRH  180 (310)
Q Consensus       113 aGad~v~---~~~~~~~~~~~~~~~~---~~~~l~v~~~v---~t~~ea-~~a~~~Gad~I~v~g~-~~~~~~~-~~~~~  180 (310)
                      -|.|.+.   .++..+++++...+..   ...+.++.+.+   +...+. ....+.|+|+|.+.|. ++|+--. ...  
T Consensus       539 ~G~~~iSP~~h~di~siedL~~~I~~Lr~~~~~~pv~vKl~~~~~~~~i~~~v~ka~~D~I~IdG~eGGTGAap~~~~--  616 (771)
T d1ea0a2         539 PGVMLISPPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSI--  616 (771)
T ss_dssp             TTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCSSEETTHH--
T ss_pred             CCCCccCCCCCCCCCCHHHHHHHHHHHHhcCCCCCEEEEECCcCcHHHHHHHHHhcCCCEEEEecCCCccccccHHHh--
Confidence            6778775   3466777777766643   34566666642   334433 3445889999999866 4444210 000  


Q ss_pred             HHHhhcceecccccCchhHHhhhccCCCcHH-----HHHHHHhc---CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEc
Q 037779          181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYD-----LVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG  252 (310)
Q Consensus       181 ~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~-----l~~~i~~~---~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VG  252 (310)
                                      |       ..+.|++     ..+.+.+.   .++.+  +++||+.|+.|+.+++.+|||+|.+|
T Consensus       617 ----------------d-------~~GlP~~~~l~~~~~~L~~~glr~~V~l--~a~Ggl~t~~Dv~ka~aLGAD~v~~g  671 (771)
T d1ea0a2         617 ----------------K-------FAGLPWEMGLSEVHQVLTLNRLRHRVRL--RTDGGLKTGRDIVIAAMLGAEEFGIG  671 (771)
T ss_dssp             ----------------H-------HSCCCHHHHHHHHHHHHHTTTCTTTSEE--EEESSCCSHHHHHHHHHTTCSEEECC
T ss_pred             ----------------h-------cCCcCHHHHHHHHHHHHHHcCCCCceEE--EEeCCCCCHHHHHHHHHhCCCchHHh
Confidence                            0       1122322     22223332   24666  78999999999999999999999999


Q ss_pred             ccccc
Q 037779          253 SGVFK  257 (310)
Q Consensus       253 sai~~  257 (310)
                      +++|-
T Consensus       672 t~~m~  676 (771)
T d1ea0a2         672 TASLI  676 (771)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98774

>d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Decameric fructose-6-phosphate aldolase/transaldolase
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.082  Score=43.88  Aligned_cols=188  Identities=15%  Similarity=0.128  Sum_probs=109.9

Q ss_pred             cCCCHHHHHHHHHcC-CcEEEecccccchhhhcCCCCCCCChHHHHHHHhhc--CcceEeeccccc----hHHHHHHHHc
Q 037779           41 DVVTPEQARIAEEAG-ACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAI  113 (310)
Q Consensus        41 ~~~~~~~a~~~~~~G-a~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~a  113 (310)
                      +..+.+..+.+.+.| ++++ -=|  |+=.+ ..|.   .....++++++.+  .-|+.+...-.+    .+++..+.+.
T Consensus         6 DtAd~~eik~~~~~~~i~Gv-TTN--Psll~-k~~~---~~~~~~~~i~~~~~~~~~is~ev~~~~~~~mi~~A~~l~~~   78 (220)
T d1l6wa_           6 DTSDVVAVKALSRIFPLAGV-TTN--PSIIA-AGKK---PLDVVLPQLHEAMGGQGRLFAQVMATTAEGMVNDALKLRSI   78 (220)
T ss_dssp             ECCCHHHHHHHHTTSCCCEE-ECC--HHHHH-HHCS---CHHHHHHHHHHHTTTCSEEEEECCCSSHHHHHHHHHHHHHH
T ss_pred             EcCCHHHHHHHHhcCCCCEE-ecC--HHHHH-hCCC---CHHHHHHHHHHHhCcCCeEEeEEeeehhhhhHHHHHHHHHh
Confidence            445677777777776 4666 222  22111 1121   1134566666665  356776644332    2455666666


Q ss_pred             CCCeee-ecCCCChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHHHHHhhcceec
Q 037779          114 GVDYVD-ESEVLTPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRHVRSVMGDIRV  190 (310)
Q Consensus       114 Gad~v~-~~~~~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~  190 (310)
                      +-+.++ ++...+--...+.+.+.+  +.+.+ .+.|..++..|.++|++|+.+. |+..                    
T Consensus        79 ~~nv~IKIP~t~~g~~ai~~L~~~G--i~vn~Tavfs~~Qa~~Aa~aga~yvspy~gR~~--------------------  136 (220)
T d1l6wa_          79 IADIVVKVPVTAEGLAAIKMLKAEG--IPTLGTAVYGAAQGLLSALAGAEYVAPYVNRID--------------------  136 (220)
T ss_dssp             STTCEEEEECSHHHHHHHHHHHHHT--CCEEEEEECSHHHHHHHHHHTCSEEEEBHHHHH--------------------
T ss_pred             ccccEEEeeccccccchhhhhhhcc--cchhhhhcccHHHHHHhhhcCCcEEeeeeeehh--------------------
Confidence            767666 665423334555555544  44444 4789999999999999999876 4311                    


Q ss_pred             ccccCchhHHhhhccCCCcHHHHHHH----Hhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC--CCH--
Q 037779          191 LRNMDDDEVFTFAKNIAAPYDLVMQT----KQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS--GDP--  261 (310)
Q Consensus       191 l~~~~~d~~~~~~~~~~~~~~l~~~i----~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~--~dp--  261 (310)
                        ...           ....++++.+    ... .+..|+   .+.+.+.+++.++.++|+|.+-+.-.+++.  .+|  
T Consensus       137 --d~g-----------~dg~~~i~~~~~~~~~~~~~tkIl---~AS~R~~~~v~~~~~~G~d~iTip~~v~~~l~~~~~t  200 (220)
T d1l6wa_         137 --AQG-----------GSGIQTVTDLHQLLKMHAPQAKVL---AASFKTPRQALDCLLAGCESITLPLDVAQQMISYPAV  200 (220)
T ss_dssp             --HTT-----------SCHHHHHHHHHHHHHHHCTTCEEE---EBCCSSHHHHHHHHHTTCSEEEECHHHHHHTTCCHHH
T ss_pred             --hcc-----------cCChHHHHHHHHHHHhcCCCceEe---ehhcCCHHHHHHHHHcCCCEEEcCHHHHHHHhcCccH
Confidence              000           1123333333    222 233442   488999999999999999999999877763  233  


Q ss_pred             HHHHHHHHHHHH
Q 037779          262 VRRARAIVQAVT  273 (310)
Q Consensus       262 ~~~~~~~~~~~~  273 (310)
                      .+.+++|.+-++
T Consensus       201 ~~~~~~F~~d~~  212 (220)
T d1l6wa_         201 DAAVAKFEQDWQ  212 (220)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            345566665554

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=96.26  E-value=0.012  Score=53.51  Aligned_cols=40  Identities=28%  Similarity=0.447  Sum_probs=32.2

Q ss_pred             HHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEcc
Q 037779          211 DLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       211 ~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGs  253 (310)
                      ++++++++. .++||+   .|++.|++.+..+++.|||+|.||-
T Consensus       181 ~~i~~ik~~~~~v~vI---aGNV~T~e~a~~L~~~GaD~VkVGi  221 (388)
T d1eepa_         181 ELIKKIKTKYPNLDLI---AGNIVTKEAALDLISVGADCLKVGI  221 (388)
T ss_dssp             HHHHHHHHHCTTCEEE---EEEECSHHHHHHHHTTTCSEEEECS
T ss_pred             HHHHHHHHHCCCCcee---eccccCHHHHHHHHhcCCCeeeecc
Confidence            455555543 567885   4999999999999999999999985

>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Bacillus subtilis [TaxId: 1423]

Probab=96.25  E-value=0.01  Score=50.01  Aligned_cols=80  Identities=28%  Similarity=0.296  Sum_probs=61.6

Q ss_pred             ecCCccc--cC-CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHH
Q 037779           34 LRGGVIM--DV-VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQIL  110 (310)
Q Consensus        34 l~~g~i~--~~-~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~  110 (310)
                      .+.|+..  ++ .|+-.++++++.|+.+++-+.   .-+-..   .=+.|+..++.|++..++||++..++|...++-.+
T Consensus       122 v~eGF~VlpY~~~D~v~ak~Le~~Gc~avMPlg---sPIGSg---~Gl~n~~~l~~i~~~~~vPvIvDAGIG~pSdAa~A  195 (251)
T d1xm3a_         122 LEEGFIVLPYTSDDVVLARKLEELGVHAIMPGA---SPIGSG---QGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYA  195 (251)
T ss_dssp             HHTTCCEEEEECSCHHHHHHHHHHTCSCBEECS---SSTTCC---CCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHH
T ss_pred             HhCCcEEEEecCCCHHHHHHHHHcCChhHHHhh---hhhhcC---CCcCChHHHHHHHhcCCccEEEecCCCCHHHHHHH
Confidence            3556543  33 358999999999999987662   001111   12578999999999999999999999988888888


Q ss_pred             HHcCCCeee
Q 037779          111 EAIGVDYVD  119 (310)
Q Consensus       111 ~~aGad~v~  119 (310)
                      .+.|+|+|+
T Consensus       196 MElG~daVL  204 (251)
T d1xm3a_         196 MELGADGVL  204 (251)
T ss_dssp             HHTTCSEEE
T ss_pred             HHccCCEEE
Confidence            999999998

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=96.25  E-value=0.0036  Score=52.99  Aligned_cols=51  Identities=20%  Similarity=0.349  Sum_probs=43.7

Q ss_pred             CcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779          208 APYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD  260 (310)
Q Consensus       208 ~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d  260 (310)
                      ....+++.+.+...+|+  .+.|||.+.+++.++++.|++-|++||..+..++
T Consensus        61 ~~~~~i~~i~~~~~~pi--~vGGGIrs~~~~~~ll~~Ga~kVvi~s~~~~~~~  111 (239)
T d1vzwa1          61 DNRALIAEVAQAMDIKV--ELSGGIRDDDTLAAALATGCTRVNLGTAALETPE  111 (239)
T ss_dssp             CCHHHHHHHHHHCSSEE--EEESSCCSHHHHHHHHHTTCSEEEECHHHHHCHH
T ss_pred             chHHHHHHHHhhcCcce--EeecccccchhhhhhhccccccchhhHHhhhccc
Confidence            35677888877778899  4699999999999999999999999999888543

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.24  E-value=0.0052  Score=52.52  Aligned_cols=50  Identities=26%  Similarity=0.413  Sum_probs=43.0

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCC
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGD  260 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~d  260 (310)
                      .+++++.+.+...+|+  .++|||.+.+++.+++..||+-|++||..+..++
T Consensus        64 ~~~~i~~i~~~~~~pi--~~gGGIr~~e~~~~ll~~G~~kVii~s~~~~~~~  113 (252)
T d1h5ya_          64 FIDSVKRVAEAVSIPV--LVGGGVRSLEDATTLFRAGADKVSVNTAAVRNPQ  113 (252)
T ss_dssp             HHHHHHHHHHHCSSCE--EEESSCCSHHHHHHHHHHTCSEEEESHHHHHCTH
T ss_pred             HHHHHHHHHhhcCCcc--eeecccchhhhhhhHhhcCCcEEEecccccCCcc
Confidence            4567777777778999  5699999999999999999999999999888543

>d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Decameric fructose-6-phosphate aldolase/transaldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.21  E-value=0.11  Score=42.94  Aligned_cols=188  Identities=16%  Similarity=0.143  Sum_probs=108.7

Q ss_pred             cCCCHHHHHHHHHcCC-cEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccch----HHHHHHHHcCC
Q 037779           41 DVVTPEQARIAEEAGA-CAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHF----VEAQILEAIGV  115 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga-~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~----~~~~~~~~aGa  115 (310)
                      +..|.+..+.+.+.|. +++ --|  |+-.+ ..|.   ...+.++.++.....|+.+...-.+.    ++++.+...+-
T Consensus         8 Dtad~~~i~~~~~~g~i~Gv-TTN--Psl~~-k~g~---~~~~~~~~i~~~~~~~is~ev~~~~~~~m~~~a~~l~~~~~   80 (218)
T d1vpxa_           8 DTANLEEIKKGVEWGIVDGV-TTN--PTLIS-KEGA---EFKQRVKEICDLVKGPVSAEVVSLDYEGMVREARELAQISE   80 (218)
T ss_dssp             ECCCHHHHHHHHHTTCCCEE-ECC--C---------------CHHHHHHHHHCSCEEEECSCCSHHHHHHHHHHHHTTCT
T ss_pred             eCCCHHHHHHHHhcCCcCcC-ccC--HHHHH-HcCC---CHHHHHHHHHhccCCcchhhhccCcHHHHHHHHHHHhcccc
Confidence            4567888888888874 676 222  22221 2222   12456777777777788877554432    34555555676


Q ss_pred             Ceee-ecCCCChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHHHHHhhcceeccc
Q 037779          116 DYVD-ESEVLTPADEENHINKHNFRVPFVC-GCRNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRHVRSVMGDIRVLR  192 (310)
Q Consensus       116 d~v~-~~~~~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~l~  192 (310)
                      +.++ ++...+-....+.+.+.+  +.+.+ .+.|..++..|.++|++||.+. |+..                      
T Consensus        81 ni~VKIP~t~~G~~ai~~L~~~G--i~~n~Tavfs~~Qa~~Aa~aga~yispy~gR~~----------------------  136 (218)
T d1vpxa_          81 YVVIKIPMTPDGIKAVKTLSAEG--IKTNVTLVFSPAQAILAAKAGATYVSPFVGRMD----------------------  136 (218)
T ss_dssp             TEEEEEESSHHHHHHHHHHHHTT--CCEEEEEECSHHHHHHHHHHTCSEEEEBHHHHH----------------------
T ss_pred             ceEEEecccccchHHHHHHHHcC--CceeeEEecCHHHHHHHHhcCCCEEEeeecchh----------------------
Confidence            6665 654322234555555544  44444 4789999999999999999875 3311                      


Q ss_pred             ccCchhHHhhhccCCCcHHHHHH----HHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccC--CCH--HH
Q 037779          193 NMDDDEVFTFAKNIAAPYDLVMQ----TKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKS--GDP--VR  263 (310)
Q Consensus       193 ~~~~d~~~~~~~~~~~~~~l~~~----i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~--~dp--~~  263 (310)
                      ...           ....+++..    +... .+..++   .+.+.+++++.++...|+|.+-+.-.+++.  .+|  ..
T Consensus       137 d~g-----------~d~~~~i~~~~~~~~~~~~~tkil---~AS~r~~~~v~~a~~~G~d~iTip~~v~~~l~~~~~t~~  202 (218)
T d1vpxa_         137 DLS-----------NDGMRMLGEIVEIYNNYGFETEII---AASIRHPMHVVEAALMGVDIVTMPFAVLEKLFKHPMTDL  202 (218)
T ss_dssp             HTT-----------SCHHHHHHHHHHHHHHHTCSCEEE---EBSCCSHHHHHHHHHHTCSEEEECHHHHHHHTCCHHHHH
T ss_pred             hhc-----------ccchhhHHHHHHHHhhhcccceee---eeccCCHHHHHHHHHcCCCEEEcCHHHHHHHHCCCccHH
Confidence            000           112222332    2222 234453   377889999999999999999998877662  233  34


Q ss_pred             HHHHHHHHHH
Q 037779          264 RARAIVQAVT  273 (310)
Q Consensus       264 ~~~~~~~~~~  273 (310)
                      .++.|.+-++
T Consensus       203 ~v~~F~~D~~  212 (218)
T d1vpxa_         203 GIERFMEDWK  212 (218)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4555555443

>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]

Probab=96.21  E-value=0.034  Score=49.75  Aligned_cols=47  Identities=19%  Similarity=0.145  Sum_probs=36.8

Q ss_pred             HHhcCCCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccCCCHHHHH
Q 037779          216 TKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSGDPVRRA  265 (310)
Q Consensus       216 i~~~~~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~~dp~~~~  265 (310)
                      +++....|+  ++.||+ +++++.++++. +||.|.+|+.++..++....+
T Consensus       287 i~~~~~~~v--i~~g~~-~~~~ae~~l~~g~aD~V~~gR~~iadPd~~~k~  334 (364)
T d1icpa_         287 MRKAYKGTF--IVAGGY-DREDGNRALIEDRADLVAYGRLFISNPDLPKRF  334 (364)
T ss_dssp             HHHHCCSCE--EEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred             HHHhcCCCE--EEECCC-CHHHHHHHHHcCCCceehhHHHHHHCccHHHHH
Confidence            444456788  456877 79999999886 599999999999988876543

>d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: HpcH/HpaI aldolase
domain: Macrophomate synthase
species: Macrophoma commelinae [TaxId: 108330]

Probab=96.19  E-value=0.3  Score=42.25  Aligned_cols=88  Identities=11%  Similarity=0.078  Sum_probs=54.0

Q ss_pred             CccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHH----HHHhh--cCcceEeeccccchHHHHHH
Q 037779           37 GVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIK----QIKSS--VTIPVMAKARIGHFVEAQIL  110 (310)
Q Consensus        37 g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~----~i~~~--~~lPv~~kd~i~~~~~~~~~  110 (310)
                      |......++..++.+..+|+|++ .+     |.-  +|..   +.+.+.    .++..  ...+.+++.--.+...++.+
T Consensus        44 G~~~~~~s~~~~e~~a~~g~D~v-~i-----D~E--Hg~~---~~~~~~~~i~a~~~~~~~~~~~iVRvp~~~~~~I~~~  112 (299)
T d1izca_          44 GVAHGIPSTFVTKVLAATKPDFV-WI-----DVE--HGMF---NRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTA  112 (299)
T ss_dssp             EEEECSCCHHHHHHHHHTCCSEE-EE-----ETT--TSCC---CHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHH
T ss_pred             eeeccCCCHHHHHHHHcCCCCEE-EE-----cCC--CCCC---CHHHHHHHHHHHHHhCCCCCCeEEeCCCCChHHHHHH
Confidence            33445567899999999999998 33     221  1211   133333    33322  23444554333344567788


Q ss_pred             HHcCCCeeeecCCCChhHHHHHHHh
Q 037779          111 EAIGVDYVDESEVLTPADEENHINK  135 (310)
Q Consensus       111 ~~aGad~v~~~~~~~~~~~~~~~~~  135 (310)
                      .++||+.|+.+...+.++..+.++.
T Consensus       113 LD~Ga~GIivP~V~s~eea~~~v~~  137 (299)
T d1izca_         113 LDAGAAGIVIPHVETVEEVREFVKE  137 (299)
T ss_dssp             HHHTCSEEEETTCCCHHHHHHHHHH
T ss_pred             HHhCcCeeeccccccHHHHHHHHHh
Confidence            9999999998877777777666654

>d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Fructose-bisphosphate aldolase (FBP aldolase)
species: Thermus aquaticus [TaxId: 271]

Probab=96.15  E-value=0.35  Score=41.87  Aligned_cols=175  Identities=15%  Similarity=0.146  Sum_probs=106.4

Q ss_pred             HHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeeeec-CCC
Q 037779           47 QARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVDES-EVL  124 (310)
Q Consensus        47 ~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~~~-~~~  124 (310)
                      +.+++++.....|.++.  +... .+.|.   .....++.+.+..++||.++ |.-.+++.+..+.++|-+.|-++ +-+
T Consensus        33 vi~AAee~~sPvIiq~s--~~~~-~~~~~---~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~ai~~GftSVMiDgS~l  106 (305)
T d1rvga_          33 VLEAAEEQRSPVILALS--EGAM-KYGGR---ALTLMAVELAKEARVPVAVHLDHGSSYESVLRALRAGFTSVMIDKSHE  106 (305)
T ss_dssp             HHHHHHHTTCCEEEEEE--HHHH-HHHHH---HHHHHHHHHHHHCSSCEEEEEEEECSHHHHHHHHHTTCSEEEECCTTS
T ss_pred             HHHHHHHHCCCEEEECC--ccHH-hHccH---HHHHHHHHHHhccCCcEEEeehhccChhhhHHHHhcCCceEEEcCccc
Confidence            46777777888876652  1111 22221   01234556666789999886 33335677888889999998743 223


Q ss_pred             Chh-------HHHHHHHhcCCCCcEEee-------------------cCCHHHHHHHH-HhCCCEEEEe-cCCCCCchHH
Q 037779          125 TPA-------DEENHINKHNFRVPFVCG-------------------CRNLGESLRRI-REGAAMIRTK-GEAGTGNIVE  176 (310)
Q Consensus       125 ~~~-------~~~~~~~~~~~~l~v~~~-------------------v~t~~ea~~a~-~~Gad~I~v~-g~~~~~~~~~  176 (310)
                      +.+       ++++..++.+  +.+=++                   .++++|+..-. +.|+|++.+. |..++-    
T Consensus       107 ~~eeNi~~Tk~vv~~Ah~~g--v~VEaElG~igg~Ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGn~HG~----  180 (305)
T d1rvga_         107 DFETNVRETRRVVEAAHAVG--VTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFMERTGADYLAVAIGTSHGA----  180 (305)
T ss_dssp             CHHHHHHHHHHHHHHHHHTT--CEEEEEESCCCCSCC------CCTTCCCHHHHHHHHHHHCCSEEEECSSCCSSS----
T ss_pred             cHHHHHHHHHHHHHHhchhc--eeEEeeeeeeecccccccccccccccCCHHHHHHHHHHhCccHhhhhhhhhhcc----
Confidence            333       3333333333  221111                   24678888754 6799988775 433221    


Q ss_pred             HHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccC---------------------CCCCH
Q 037779          177 AVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAG---------------------GVATP  235 (310)
Q Consensus       177 ~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~G---------------------GI~t~  235 (310)
                                    ++. ++        ...-++++++.+.+..++|+++=-.+                     |+ +.
T Consensus       181 --------------Yk~-~~--------~~~l~~~~l~~I~~~~~~PLVlHGgS~vp~~~~~~~~~~g~~lhg~sG~-~~  236 (305)
T d1rvga_         181 --------------YKG-KG--------RPFIDHARLERIARLVPAPLVLHGASAVPPELVERFRASGGEIGEAAGI-HP  236 (305)
T ss_dssp             --------------BCS-SS--------SCCCCHHHHHHHHHHCCSCEEECSCCCCCHHHHHHHHHTTCCCCSCBCC-CH
T ss_pred             --------------cCC-CC--------cccchHHHHHHHHhccCCCeeccCCccccHHHHhhhcccCcccCCCCCC-CH
Confidence                          000 00        11236888899988888998742222                     77 48


Q ss_pred             HHHHHHHHcCCCEEEEcccccc
Q 037779          236 ADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       236 ~di~~~~~~GadgV~VGsai~~  257 (310)
                      ++++++++.|..-|=++|.+..
T Consensus       237 e~i~~ai~~GV~KiNi~T~l~~  258 (305)
T d1rvga_         237 EDIKKAISLGIAKINTDTDLRL  258 (305)
T ss_dssp             HHHHHHHHTTEEEEEECHHHHH
T ss_pred             HHHHHHHHcCeEEEEeChHHHH
Confidence            9999999999999999997765

>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Synechocystis sp. [TaxId: 1143]

Probab=96.12  E-value=0.012  Score=57.77  Aligned_cols=118  Identities=19%  Similarity=0.282  Sum_probs=73.1

Q ss_pred             cCCCeee---ecCCCChhHHHHHHHh---cCCCCcEEeec---CCHH-HHHHHHHhCCCEEEEecC-CCCCch-HHHHHH
Q 037779          113 IGVDYVD---ESEVLTPADEENHINK---HNFRVPFVCGC---RNLG-ESLRRIREGAAMIRTKGE-AGTGNI-VEAVRH  180 (310)
Q Consensus       113 aGad~v~---~~~~~~~~~~~~~~~~---~~~~l~v~~~v---~t~~-ea~~a~~~Gad~I~v~g~-~~~~~~-~~~~~~  180 (310)
                      -|.+.+-   .++..+++++...+..   ...+.++.+.+   .... .+.-..++|+|+|.+.|. ++|+-- ....+ 
T Consensus       566 ~G~~liSP~~h~diysiedL~q~I~~Lr~~~~~~pv~vKl~~~~g~~~ia~~vaka~aD~I~IdG~eGGTGAap~~~~~-  644 (809)
T d1ofda2         566 PGVTLISPPPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIK-  644 (809)
T ss_dssp             TTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCCCSSEEHHHHH-
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeeecChHHHHHHHhhcCCCEEEEeCCCCccccccHHHHh-
Confidence            6888875   3466777776666543   34456665542   2333 333445789999999866 444421 11111 


Q ss_pred             HHHhhcceecccccCchhHHhhhccCCCcHH-----HHHHHHhc---CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEc
Q 037779          181 VRSVMGDIRVLRNMDDDEVFTFAKNIAAPYD-----LVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVG  252 (310)
Q Consensus       181 ~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~-----l~~~i~~~---~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VG  252 (310)
                                              ..+.|++     ..+.+.+.   .++.+  +++||+.|+.|+..++.+|||+|.+|
T Consensus       645 ------------------------~~GlP~~~gl~~a~~~L~~~glR~~V~L--ia~Ggl~t~~Dv~ka~aLGAD~v~~g  698 (809)
T d1ofda2         645 ------------------------HAGSPWELGVTEVHRVLMENQLRDRVLL--RADGGLKTGWDVVMAALMGAEEYGFG  698 (809)
T ss_dssp             ------------------------HBCCCHHHHHHHHHHHHHHTTCGGGCEE--EEESSCCSHHHHHHHHHTTCSEEECS
T ss_pred             ------------------------cCCccHHHHHHHHHHHHHHcCCCCceEE--EEeCCCCCHHHHHHHHHhCCCchhHh
Confidence                                    1122322     11222222   14666  78999999999999999999999999


Q ss_pred             ccccc
Q 037779          253 SGVFK  257 (310)
Q Consensus       253 sai~~  257 (310)
                      ++++-
T Consensus       699 t~~l~  703 (809)
T d1ofda2         699 SIAMI  703 (809)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            97764

>d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Putative aldolase YihT
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.07  E-value=0.036  Score=48.04  Aligned_cols=43  Identities=23%  Similarity=0.339  Sum_probs=31.5

Q ss_pred             HHHHhcCCCCEEEEccCCCCCHHHHHH----HHHcCCCEEEEccccccC
Q 037779          214 MQTKQLGRLPVVHFAAGGVATPADAAM----MMQLGCDGVFVGSGVFKS  258 (310)
Q Consensus       214 ~~i~~~~~iPVv~ia~GGI~t~~di~~----~~~~GadgV~VGsai~~~  258 (310)
                      ..+.....+|+| +.+||. +.+++.+    +++.||.|+++|+.|++.
T Consensus       212 ~~~~~~~~~p~v-vLs~G~-~~~~f~~~l~~A~~aGa~G~~~GR~iw~~  258 (291)
T d1to3a_         212 QRLNGHINMPWV-ILSSGV-DEKLFPRAVRVAMEAGASGFLAGRAVWSS  258 (291)
T ss_dssp             HHHHHTCCSCEE-ECCTTS-CTTTHHHHHHHHHHTTCCEEEESHHHHGG
T ss_pred             HHHhhcCCCcEE-EEeCCC-CHHHHHHHHHHHHHCCCeEEEeChhhhhC
Confidence            334444678977 568887 4666544    456899999999999985

>d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Escherichia coli [TaxId: 562]

Probab=95.79  E-value=0.024  Score=48.30  Aligned_cols=25  Identities=28%  Similarity=0.388  Sum_probs=21.6

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHHcCCC
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQLGCD  247 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~~Gad  247 (310)
                      ++.|  =++|||.|++++.+++++|++
T Consensus       197 ~vgI--KasGGIrt~~~a~~~i~~ga~  221 (250)
T d1p1xa_         197 TVGF--KPAGGVRTAEDAQKYLAIADE  221 (250)
T ss_dssp             TCEE--ECBSSCCSHHHHHHHHHHHHH
T ss_pred             ceee--EecCCCCCHHHHHHHHHHHHH
Confidence            4566  579999999999999999876

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.78  E-value=0.023  Score=50.57  Aligned_cols=87  Identities=16%  Similarity=0.124  Sum_probs=65.7

Q ss_pred             hHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec--------CCCChhHHHHHHHh-cCCCCcEEee--cCCH
Q 037779           81 PQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES--------EVLTPADEENHINK-HNFRVPFVCG--CRNL  149 (310)
Q Consensus        81 ~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~--------~~~~~~~~~~~~~~-~~~~l~v~~~--v~t~  149 (310)
                      .+.+..+++..+.|+++|.... .+.+..+.++|+|.+..+        ...++.+....+.. .+.+++++++  +++.
T Consensus       206 ~~~i~~l~~~~~~pii~Kgi~~-~~da~~a~~~G~d~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G  284 (349)
T d1tb3a1         206 WNDLSLLQSITRLPIILKGILT-KEDAELAMKHNVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVRTG  284 (349)
T ss_dssp             HHHHHHHHTTCCSCEEEEEECS-HHHHHHHHHTTCSEEEECCGGGTSSCSBCCHHHHHHHHHHHHTTSSEEEEESSCCSH
T ss_pred             HHHHHHHHHhcCCCcccchhhh-hHHHHHHHHhhccceeeeccccccccccccchhhcceeeeccCCCeeEEeccCcCcH
Confidence            4788899999999999997654 367788899999998732        11233344444444 4456888885  9999


Q ss_pred             HHHHHHHHhCCCEEEEecC
Q 037779          150 GESLRRIREGAAMIRTKGE  168 (310)
Q Consensus       150 ~ea~~a~~~Gad~I~v~g~  168 (310)
                      .|+.+++.+||+++++..+
T Consensus       285 ~Dv~KALALGA~~V~igrp  303 (349)
T d1tb3a1         285 TDVLKALALGARCIFLGRP  303 (349)
T ss_dssp             HHHHHHHHTTCSCEEESHH
T ss_pred             HHHHHHHHcCCCEEEEChH
Confidence            9999999999999998643

>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: 2-methylisocitrate lyase
species: Escherichia coli [TaxId: 562]

Probab=95.58  E-value=0.28  Score=42.23  Aligned_cols=188  Identities=13%  Similarity=0.173  Sum_probs=102.1

Q ss_pred             CCCHHHHHHHHHcCCcEEEecccccchhhh-cCCC---CCCCC---hHHHHHHHhhcCcceEeec--ccc-ch----HHH
Q 037779           42 VVTPEQARIAEEAGACAVMALERVPADIRA-QGGV---ARMSD---PQLIKQIKSSVTIPVMAKA--RIG-HF----VEA  107 (310)
Q Consensus        42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~-~~G~---~~~~~---~~~i~~i~~~~~lPv~~kd--~i~-~~----~~~  107 (310)
                      +-|+--|+.++.+|++++-.--   -...+ ..|-   ..++-   .+.++.|.+.+++||++-.  ..| ..    ..+
T Consensus        23 ~~D~~sA~~~e~~Gf~a~~~sg---~~~sa~~~G~pD~~~~~~~e~~~~~~~i~~a~~~Pvi~D~d~GyG~~~~~v~~~v   99 (289)
T d1muma_          23 TINANHALLAQRAGYQAIYLSG---GGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTV   99 (289)
T ss_dssp             CSSHHHHHHHHHTTCSCEEECH---HHHHHTTSCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEECTTCSSSSHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCEEEhhH---HHHHHHccCCCCCCCCChHHHHHHHHHHhcccCCCeeecccccccccchHHHHHH
Confidence            4567789999999999872110   00111 0011   01111   3346677888899999953  223 22    345


Q ss_pred             HHHHHcCCCeeeecCC--------------CChhHHHHHHHh-----cCCCCcEEeecCC-----HHHHH----HHHHhC
Q 037779          108 QILEAIGVDYVDESEV--------------LTPADEENHINK-----HNFRVPFVCGCRN-----LGESL----RRIREG  159 (310)
Q Consensus       108 ~~~~~aGad~v~~~~~--------------~~~~~~~~~~~~-----~~~~l~v~~~v~t-----~~ea~----~a~~~G  159 (310)
                      +.+.++|+-++++-+.              .+..+....++.     ..+++.+++-+..     .+|+.    ...++|
T Consensus       100 ~~~~~aGvagi~iEDq~~pk~~g~~~~~~~~~~~e~~~ki~aa~~a~~~~d~~IiARTDa~~~~g~~eAi~R~~aY~eAG  179 (289)
T d1muma_         100 KSMIKAGAAGLHIEDQVGAKRCGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAIERAQAYVEAG  179 (289)
T ss_dssp             HHHHHHTCSEEEEECBCCCSSTTCCSCCCBCCHHHHHHHHHHHHHTCSSTTSEEEEEECCHHHHCHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCCEEEecCcccccccccccccceecHHHHHHHHHHHHHhcCCcchhheeccccccccCHHHHHHHHHHhhhcC
Confidence            7788899999984322              123344444332     1233445554432     33332    233567


Q ss_pred             CCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEE-EccCCCCCHHHH
Q 037779          160 AAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVH-FAAGGVATPADA  238 (310)
Q Consensus       160 ad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~-ia~GGI~t~~di  238 (310)
                      ||.+.+.+.                                       .+.+.++.+.+..+.|+++ +..||-...-+.
T Consensus       180 AD~vf~~~~---------------------------------------~~~~~~~~~~~~~~~Pl~~~~~~~~~~p~~s~  220 (289)
T d1muma_         180 AEMLFPEAI---------------------------------------TELAMYRQFADAVQVPILANITEFGATPLFTT  220 (289)
T ss_dssp             CSEEEETTC---------------------------------------CCHHHHHHHHHHHCSCBEEECCSSSSSCCCCH
T ss_pred             CcEEEecCC---------------------------------------CCHHHHHHHHHhcCCCEEEeecCcCCCccchH
Confidence            777766422                                       1233344444444456532 345665322368


Q ss_pred             HHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779          239 AMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       239 ~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                      .++.++|+.-+..+...+++  ....++++.+.+.
T Consensus       221 ~eL~~~Gv~~v~~~~~~~~a--a~~a~~~~~~~l~  253 (289)
T d1muma_         221 DELRSAHVAMALYPLSAFRA--MNRAAEHVYNVLR  253 (289)
T ss_dssp             HHHHHTTCSEEEESSHHHHH--HHHHHHHHHHHHH
T ss_pred             HHHHHhccceEEechHHHHH--HHHHHHHHHHHHH
Confidence            89999999999999887763  2333444444443

>d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Thermotoga maritima [TaxId: 2336]

Probab=95.57  E-value=0.041  Score=45.10  Aligned_cols=29  Identities=17%  Similarity=0.255  Sum_probs=26.2

Q ss_pred             HHHcCCCEEEEccccccCCCHHHHHHHHH
Q 037779          241 MMQLGCDGVFVGSGVFKSGDPVRRARAIV  269 (310)
Q Consensus       241 ~~~~GadgV~VGsai~~~~dp~~~~~~~~  269 (310)
                      .++.|||-++||++|++++||.+.+++++
T Consensus       169 ai~~GAd~iVVGR~It~s~dp~~~~~~i~  197 (198)
T d1vqta1         169 EMKGIANFAVLGREIYLSENPREKIKRIK  197 (198)
T ss_dssp             HHTTTCSEEEESHHHHTSSCHHHHHHHHT
T ss_pred             HHHcCCCEEEECCcccCCCCHHHHHHHHh
Confidence            46789999999999999999999998875

>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Tritrichomonas foetus [TaxId: 5724]

Probab=95.52  E-value=0.079  Score=47.32  Aligned_cols=123  Identities=14%  Similarity=0.114  Sum_probs=75.9

Q ss_pred             cCcceEee--ccccchHHHHHHHHcCCCeeeecCCCChhHHHHHHHh-cCCCC--cEEeecCCH-HHHHHHHHhCCCEEE
Q 037779           91 VTIPVMAK--ARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINK-HNFRV--PFVCGCRNL-GESLRRIREGAAMIR  164 (310)
Q Consensus        91 ~~lPv~~k--d~i~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~-~~~~l--~v~~~v~t~-~ea~~a~~~Gad~I~  164 (310)
                      .++||+.-  |-+..++.+..+...|.=.++ +...++++..+.... .....  ......... +.+....+.|++++.
T Consensus        49 l~iPIIsAnMDTVt~~~mA~~la~~Gglgvi-hR~~~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ag~d~i~  127 (362)
T d1pvna1          49 LKIPLVSAIMQSVSGEKMAIALAREGGISFI-FGSQSIESQAAMVHAVKNFRYLVGAGINTRDFRERVPALVEAGADVLC  127 (362)
T ss_dssp             ESSSEEECSCTTTCSHHHHHHHHHTTCEEEE-CCSSCHHHHHHHHHHHHTCCCCCEEEECSSSHHHHHHHHHHHTCSEEE
T ss_pred             cCCcEEecCCCCcCCHHHHHHHHHCCCEEEE-eecCCHHHHHHHhhhhhhcccccccccchhhhHHHHHHHhhcCceEEe
Confidence            36898873  555666666677777766654 445567776666655 33332  222222333 344556688999998


Q ss_pred             EecC-CCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHh-c-CCCCEEEEccCCCCCHHHHHHH
Q 037779          165 TKGE-AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQ-L-GRLPVVHFAAGGVATPADAAMM  241 (310)
Q Consensus       165 v~g~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~-~-~~iPVv~ia~GGI~t~~di~~~  241 (310)
                      +... .+..+.                                   .+.++.+++ . .++||+   +|.|.|++.++.+
T Consensus       128 IDvAhG~~~~v-----------------------------------~~~i~~ir~~~~~~~~Ii---AGNVaT~e~~~~L  169 (362)
T d1pvna1         128 IDSSDGFSEWQ-----------------------------------KITIGWIREKYGDKVKVG---AGNIVDGEGFRYL  169 (362)
T ss_dssp             ECCSCCCBHHH-----------------------------------HHHHHHHHHHHGGGSCEE---EEEECSHHHHHHH
T ss_pred             echhccchhHH-----------------------------------HHHHHHHHHhhccceeee---cccccCHHHHHHH
Confidence            8622 222111                                   122333322 1 246774   5999999999999


Q ss_pred             HHcCCCEEEEc
Q 037779          242 MQLGCDGVFVG  252 (310)
Q Consensus       242 ~~~GadgV~VG  252 (310)
                      ++.|+|+|-||
T Consensus       170 ~~aGaD~vkVG  180 (362)
T d1pvna1         170 ADAGADFIKIG  180 (362)
T ss_dssp             HHHTCSEEEEC
T ss_pred             HHhCCcEEEec
Confidence            99999999999

>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Thermotoga maritima [TaxId: 2336]

Probab=95.45  E-value=0.0091  Score=50.48  Aligned_cols=51  Identities=16%  Similarity=0.213  Sum_probs=40.9

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPV  262 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~  262 (310)
                      ...+...+.+. .+|+  -..|||.+.+++.++++.|++-|+++|+++..++..
T Consensus        62 ~~~~~~~~~~~-~~pl--~~gGGI~s~~~~~~~~~~Ga~kVvi~s~~~~~~~~~  112 (241)
T d1qo2a_          62 NLPVLEKLSEF-AEHI--QIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPSFL  112 (241)
T ss_dssp             THHHHHHGGGG-GGGE--EEESSCCSHHHHHHHHHTTCCEEEECHHHHHCTTHH
T ss_pred             chhheehhccc-ccch--hhhhhhhhhhhhhhccccccceEecCcccccCchhh
Confidence            34555666554 4698  458999999999999999999999999999876544

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.44  E-value=0.013  Score=47.98  Aligned_cols=90  Identities=19%  Similarity=0.161  Sum_probs=58.4

Q ss_pred             CCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-e
Q 037779           42 VVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-E  120 (310)
Q Consensus        42 ~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~  120 (310)
                      ..+.+.+..+.+.|++.+..-+..-+.. .........+.+.++++++.+++||++...+.+.+++..+.++|||+|. +
T Consensus       126 ~~t~~~a~~~~~~g~d~i~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~~iPVia~GGI~t~~d~~~~~~~GAdgV~iG  204 (222)
T d1y0ea_         126 IATVEEAKNAARLGFDYIGTTLHGYTSY-TQGQLLYQNDFQFLKDVLQSVDAKVIAEGNVITPDMYKRVMDLGVHCSVVG  204 (222)
T ss_dssp             CSSHHHHHHHHHTTCSEEECTTTTSSTT-STTCCTTHHHHHHHHHHHHHCCSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred             CCCHHHHHHHHHcCCCeEEEeccCCccc-ccCccchhhHHHHHHHHHhcCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence            3446778889999999984321000000 0001111223567888888999999999999877888888899999998 5


Q ss_pred             cCCCChhHHHHH
Q 037779          121 SEVLTPADEENH  132 (310)
Q Consensus       121 ~~~~~~~~~~~~  132 (310)
                      +....|.++.+.
T Consensus       205 sAi~rp~~~~~~  216 (222)
T d1y0ea_         205 GAITRPKEITKR  216 (222)
T ss_dssp             HHHHCHHHHHHH
T ss_pred             hhhcCHHHHHHH
Confidence            544445554443

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.40  E-value=0.046  Score=49.27  Aligned_cols=169  Identities=16%  Similarity=0.193  Sum_probs=96.9

Q ss_pred             cCcceEee--ccccchHHHHHHHHcCCCeeeecCCCChhHHHHHHHh-cCC------------CCcEEeecCCH-H---H
Q 037779           91 VTIPVMAK--ARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINK-HNF------------RVPFVCGCRNL-G---E  151 (310)
Q Consensus        91 ~~lPv~~k--d~i~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~-~~~------------~l~v~~~v~t~-~---e  151 (310)
                      .++||+.-  |.+...+.+..+..+|.=.++ +...++++..+.+.+ +..            .+.+.+.+... +   .
T Consensus        45 l~iPIIsApMdtVt~~~mA~als~~GGLGvL-hr~~~~e~~~~ev~~v~~~~~~p~~~~~~~~~l~v~aavg~~~~~~~~  123 (378)
T d1jr1a1          45 LKTPLVSSPMDTVTEAGMAIAMALTGGIGFI-HHNCTPEFQANEVRKVKKYEQYPLASKDAKKQLLCGAAIGTHEDDKYR  123 (378)
T ss_dssp             ESSCEEECCCTTTCSHHHHHHHHHHTCEEEE-CCSSCHHHHHHHHHHHHTSCCCTTCCBCTTSCBCCEEEECSSTHHHHH
T ss_pred             CCCCEEECCCCCcCCHHHHHHHHHCCCeeEE-cCCCCHHHHHHHHheehhhhhCcccccccccCEEEEEEeccCHHHHHH
Confidence            46899874  556666777777778877775 344567766665554 111            12233333221 1   2


Q ss_pred             HHHHHHhCCCEEEEecCC-CCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEcc
Q 037779          152 SLRRIREGAAMIRTKGEA-GTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAA  229 (310)
Q Consensus       152 a~~a~~~Gad~I~v~g~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~  229 (310)
                      +....+.|++++.+.... +..+                                   ..+.++.+++. .++|++   .
T Consensus       124 ~~~l~~agv~vi~id~a~g~~~~-----------------------------------~~~~i~~ik~~~~~~~iI---a  165 (378)
T d1jr1a1         124 LDLLALAGVDVVVLDSSQGNSIF-----------------------------------QINMIKYMKEKYPNLQVI---G  165 (378)
T ss_dssp             HHHHHHHTCCEEEECCSSCCSHH-----------------------------------HHHHHHHHHHHSTTCEEE---E
T ss_pred             HHHHHhhccceEeeeccCccchh-----------------------------------hHHHHHHHHHHCCCCcee---e
Confidence            344557899999886331 1100                                   12233444443 467774   4


Q ss_pred             CCCCCHHHHHHHHHcCCCEEEEcccccc---------CCCH-HHHHHHHHHHHHcCCC----------h-hhHHhhhhcc
Q 037779          230 GGVATPADAAMMMQLGCDGVFVGSGVFK---------SGDP-VRRARAIVQAVTNYSD----------P-DVLAEVSCGL  288 (310)
Q Consensus       230 GGI~t~~di~~~~~~GadgV~VGsai~~---------~~dp-~~~~~~~~~~~~~~~~----------~-~~~~~~~~~~  288 (310)
                      |.+.|++.+..++++|||+|.||-.=-.         -..| ...+....+..+.+.-          + ++..-++...
T Consensus       166 GnVaT~e~a~~L~~aGAD~VkVGiG~Gs~ctTr~~tGvG~pq~sai~~~~~~a~~~~vpIIADGGi~~~gdiakAla~GA  245 (378)
T d1jr1a1         166 GNVVTAAQAKNLIDAGVDALRVGMGCGSICITQEVLACGRPQATAVYKVSEYARRFGVPVIADGGIQNVGHIAKALALGA  245 (378)
T ss_dssp             EEECSHHHHHHHHHHTCSEEEECSSCSTTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHhCCCEEeeccccccccccccccccCcccchhhhHHHHhhcccCCceecccccccCCceeeEEEeec
Confidence            9999999999999999999999863111         1122 2233333344444322          2 4556666666


Q ss_pred             CCceeccccc
Q 037779          289 GEAMVGIDLN  298 (310)
Q Consensus       289 ~~~~~~~~~~  298 (310)
                      -..|+|--|-
T Consensus       246 d~VMmGs~fA  255 (378)
T d1jr1a1         246 STVMMGSLLA  255 (378)
T ss_dssp             SEEEESTTTT
T ss_pred             ceeeecceee
Confidence            6667776554

>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.35  E-value=0.056  Score=45.52  Aligned_cols=70  Identities=29%  Similarity=0.413  Sum_probs=56.1

Q ss_pred             CHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee
Q 037779           44 TPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD  119 (310)
Q Consensus        44 ~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~  119 (310)
                      |+-.++.+++.|+..++-+.    .+  .+...-+.++..++.++...++|+++..+++...++-.+.+.|+|+|+
T Consensus       137 D~v~ak~le~~Gc~~vMplg----sP--IGsg~Gi~n~~~l~~i~~~~~vpvivdAGIg~psdaa~AMElG~dgVL  206 (243)
T d1wv2a_         137 DPIIARQLAEIGCIAVMPLA----GL--IGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDAAIAMELGCEAVL  206 (243)
T ss_dssp             CHHHHHHHHHSCCSEEEECS----SS--TTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHHTCSEEE
T ss_pred             CHHHHhHHHHcCceeeeecc----cc--cccccccccHHHHHhccccCCcceEeecccCCHHHHHHHHHccCCEEE
Confidence            47889999999999987651    11  111123567888999998899999999999988888889999999998

>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: Phosphoenolpyruvate mutase
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=95.33  E-value=0.35  Score=41.23  Aligned_cols=77  Identities=22%  Similarity=0.227  Sum_probs=45.2

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCC---CCCCC---hHHHHHHHhhcCcceEee--ccccc----hHHHH
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGV---ARMSD---PQLIKQIKSSVTIPVMAK--ARIGH----FVEAQ  108 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~---~~~~~---~~~i~~i~~~~~lPv~~k--d~i~~----~~~~~  108 (310)
                      .+.|+--|+.++++|++++-.--   ....+..|.   ..+.-   .+.++.|++.+++||++-  .+.+.    ...++
T Consensus        22 ~~~Da~SAr~~e~aGf~a~~~ss---~~~aas~G~pD~~~lt~~e~~~~~~~I~~~~~lPv~~D~d~GyG~~~~v~~tv~   98 (275)
T d1s2wa_          22 EAHNGLSARIVQEAGFKGIWGSG---LSVSAQLGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFNNARRLVR   98 (275)
T ss_dssp             EECSHHHHHHHHHHTCSCEEECC---HHHHHTC---------CHHHHHHHHHHHHTCSSCEEEECCSSCSSHHHHHHHHH
T ss_pred             cCcCHHHHHHHHHcCCCEEEhhH---HHHHHHcCCCCCCccchhhHHHHHHhhhcccCCceeEecccccccchHHHHHHH
Confidence            34567779999999999872110   001010111   01111   334567788899999985  23332    24567


Q ss_pred             HHHHcCCCeeee
Q 037779          109 ILEAIGVDYVDE  120 (310)
Q Consensus       109 ~~~~aGad~v~~  120 (310)
                      .+.++|+.++++
T Consensus        99 ~~~~aGaagi~i  110 (275)
T d1s2wa_          99 KLEDRGVAGACL  110 (275)
T ss_dssp             HHHHTTCCEEEE
T ss_pred             HHHHhccceeEe
Confidence            888899999984

>d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate aldolase/transaldolase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Decameric fructose-6-phosphate aldolase/transaldolase
species: Thermus thermophilus [TaxId: 274]

Probab=95.13  E-value=0.18  Score=41.37  Aligned_cols=142  Identities=18%  Similarity=0.153  Sum_probs=84.5

Q ss_pred             HHHHHHHhhcCcceEeeccccch----HHHHHHHHcCCCeee-ecCCCChhHHHHHHHhcCCCCcEEe-ecCCHHHHHHH
Q 037779           82 QLIKQIKSSVTIPVMAKARIGHF----VEAQILEAIGVDYVD-ESEVLTPADEENHINKHNFRVPFVC-GCRNLGESLRR  155 (310)
Q Consensus        82 ~~i~~i~~~~~lPv~~kd~i~~~----~~~~~~~~aGad~v~-~~~~~~~~~~~~~~~~~~~~l~v~~-~v~t~~ea~~a  155 (310)
                      ..++.++...+-|+.+...-.+.    ++++.+...+-+.++ ++...+--...+.+.+.  |+.+-+ .+.|+.++..|
T Consensus        50 ~~~~~~~~~~~~~is~ev~~~~~e~m~~~a~~l~~~~~ni~iKIP~t~~G~~a~~~L~~~--Gi~vn~T~vfs~~Qa~~A  127 (211)
T d1wx0a1          50 AHLRAICETVGGPVSAEVTALEAEAMVAEGRRLAAIHPNIVVKLPTTEEGLKACKRLSAE--GIKVNMTLIFSANQALLA  127 (211)
T ss_dssp             HHHHHHHHHHTSCEEEECCCSSHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHHHHT--TCCEEEEEECSHHHHHHH
T ss_pred             HHHHHHHhhccCCeEEEEeeCcHHHHHHHHHHHhhcCCceEEEeccchhhhHHHHHHhhc--CCceeEEEecCHHHHHHH
Confidence            34566666666787775433322    344455556666666 65432223445555554  444444 47899999999


Q ss_pred             HHhCCCEEEEe-cCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCC
Q 037779          156 IREGAAMIRTK-GEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVA  233 (310)
Q Consensus       156 ~~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~  233 (310)
                      .++|++||.+. |+..                      ....|+.       ..-.++...+... .+..|+   .+.+.
T Consensus       128 a~aga~yispyvgR~~----------------------d~g~d~~-------~~~~~~~~~~~~~~~~tkil---~AS~R  175 (211)
T d1wx0a1         128 ARAGASYVSPFLGRVD----------------------DISWDGG-------ELLREIVEMIQVQDLPVKVI---AASIR  175 (211)
T ss_dssp             HHTTCSEEEEBHHHHH----------------------HTTSCHH-------HHHHHHHHHHHHTTCSCEEE---EBCCC
T ss_pred             HHcCCCEEEEeeecch----------------------hccccch-------hHHHHHHHHHHhccccceeE---eeecC
Confidence            99999999875 4311                      0000110       0012223333322 244553   37789


Q ss_pred             CHHHHHHHHHcCCCEEEEcccccc
Q 037779          234 TPADAAMMMQLGCDGVFVGSGVFK  257 (310)
Q Consensus       234 t~~di~~~~~~GadgV~VGsai~~  257 (310)
                      +++++.++...|+|.+-+.-.+++
T Consensus       176 ~~~~~~~~~~~G~d~vTi~~~v~~  199 (211)
T d1wx0a1         176 HPRHVTEAALLGADIATMPHAVFK  199 (211)
T ss_dssp             SHHHHHHHHHTTCSEEEECHHHHH
T ss_pred             CHHHHHHHHHcCCCEEEeCHHHHH
Confidence            999999999999999999876665

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.10  E-value=0.031  Score=45.96  Aligned_cols=88  Identities=17%  Similarity=0.158  Sum_probs=57.2

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-  119 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-  119 (310)
                      .+.+++.++.+.++|++.+..-++..+   ...+. .......+..++...++|+++...+.+.+++..+.++|||+|. 
T Consensus       136 ~v~t~~~a~~a~~~Gad~i~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~ipvia~GGI~t~~d~~~al~~GAd~V~v  211 (230)
T d1yxya1         136 DISTFDEGLVAHQAGIDFVGTTLSGYT---PYSRQ-EAGPDVALIEALCKAGIAVIAEGKIHSPEEAKKINDLGVAGIVV  211 (230)
T ss_dssp             ECSSHHHHHHHHHTTCSEEECTTTTSS---TTSCC-SSSCCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHTTCCSEEEE
T ss_pred             CCCCHHHHHHHHhcCCCEEEeeccccc---ccccc-cchHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence            456678999999999998843211110   11111 1222344666677789999999888777788888899999998 


Q ss_pred             ecCCCChhHHHHH
Q 037779          120 ESEVLTPADEENH  132 (310)
Q Consensus       120 ~~~~~~~~~~~~~  132 (310)
                      ++....|.++.+.
T Consensus       212 GsAi~~p~~i~~~  224 (230)
T d1yxya1         212 GGAITRPKEIAER  224 (230)
T ss_dssp             CHHHHCHHHHHHH
T ss_pred             ChhhcCHHHHHHH
Confidence            5444345554433

>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Pentaerythritol tetranirate reductase
species: Enterobacter cloacae [TaxId: 550]

Probab=94.95  E-value=0.052  Score=48.49  Aligned_cols=55  Identities=20%  Similarity=0.202  Sum_probs=42.7

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~~~  266 (310)
                      ...+.+.+++....||  ++.| +.|++.+.++++.| ||.|.+|++++..+|....++
T Consensus       281 ~~~~~~~~~~~~~~~v--i~~G-~~t~~~ae~~l~~G~~DlV~~gR~liadP~~~~K~~  336 (363)
T d1vyra_         281 SEAFRQKVRERFHGVI--IGAG-AYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARLQ  336 (363)
T ss_dssp             CHHHHHHHHHHCCSEE--EEES-SCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHHH
T ss_pred             cHHHHHHHHHhcCceE--EecC-CCCHHHHHHHHHCCCcceehhhHHHHHCccHHHHHH
Confidence            4556677777667777  4345 55899999999998 899999999999888765543

>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Thermus thermophilus [TaxId: 274]

Probab=94.77  E-value=0.26  Score=42.00  Aligned_cols=118  Identities=17%  Similarity=0.109  Sum_probs=71.4

Q ss_pred             HHHHHHHcCCcEEEecc-cccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc--chHHHHHHHHcCCCeeeec--
Q 037779           47 QARIAEEAGACAVMALE-RVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG--HFVEAQILEAIGVDYVDES--  121 (310)
Q Consensus        47 ~a~~~~~~Ga~~I~~l~-~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~--~~~~~~~~~~aGad~v~~~--  121 (310)
                      ..+.....++.++ .++ ..+.+. ...+.................+.|+.+|....  +.+.++.+.++|+|.|..+  
T Consensus       115 ~~~~~~~~~~~a~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~k~v~~~~~~e~a~~~~~aGvd~i~vsn~  192 (310)
T d1vcfa1         115 LLRLVEMLEADAL-AFHVNPLQEA-VQRGDTDFRGLVERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGA  192 (310)
T ss_dssp             HHHHHHHHTCSEE-EEECCHHHHH-HTTSCCCCTTHHHHHHHHCSCSSCEEEECSSSCCCHHHHHHHTTSCCSEEECCCB
T ss_pred             HHHHHHhcCCCee-ccccccchhh-hcccccccccHHHHHHHHhhccCCceeeeecCcccHHHHHHHHHcCCCEEEeccc
Confidence            4555555677776 333 112111 11222223334445555555688999886542  4567788889999998732  


Q ss_pred             CC------------------------CChhHHHHHHHhcCCCCcEEee--cCCHHHHHHHHHhCCCEEEEe
Q 037779          122 EV------------------------LTPADEENHINKHNFRVPFVCG--CRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       122 ~~------------------------~~~~~~~~~~~~~~~~l~v~~~--v~t~~ea~~a~~~Gad~I~v~  166 (310)
                      ..                        .+..+.+..+.....+++++++  +++..|+.+++.+|||+|.+.
T Consensus       193 gg~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~~~~i~Ii~dGGIr~g~Dv~KALalGAdaV~iG  263 (310)
T d1vcfa1         193 GGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDGAKALALGADLLAVA  263 (310)
T ss_dssp             TSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCSSSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred             cccchhhcccccccCchhhhhhhhcchHHHHHHHHHHhhcCCCeEEeCCCCCchHHHHHHHHhCCCEeeEh
Confidence            11                        1111222333333456787775  999999999999999999985

>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.53  E-value=0.85  Score=38.11  Aligned_cols=193  Identities=17%  Similarity=0.131  Sum_probs=100.4

Q ss_pred             CCHHHHHHHHHcCCcEEEecccccchhhhcCCCC--CCCChHHHHHHHhhcCcceEee-cccc------chHHHHHHHHc
Q 037779           43 VTPEQARIAEEAGACAVMALERVPADIRAQGGVA--RMSDPQLIKQIKSSVTIPVMAK-ARIG------HFVEAQILEAI  113 (310)
Q Consensus        43 ~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~--~~~~~~~i~~i~~~~~lPv~~k-d~i~------~~~~~~~~~~a  113 (310)
                      .+++..+.+.++|++.+ =+|       ..+|+.  .....+.++++.+..+.|+.+. |.-+      +.+......+.
T Consensus        15 ~~~~~l~~li~aGvdv~-RlN-------~SHg~~~~~~~~i~~ir~~~~~~~~~~~I~~Dl~gp~ltekD~~~i~~a~~~   86 (246)
T d1e0ta2          15 ESEEMLAKMLDAGMNVM-RLN-------FSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPALAEKDKQDLIFGCEQ   86 (246)
T ss_dssp             CSHHHHHHHHHHTEEEE-EEE-------TTSSCHHHHHHHHHHHHHHHHHHTCCCEEEEECCCCSSCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCCEE-EEE-------CCCCCHHHHHHHHHHHHHHHHHcCCCCcccccccccccccCcchhhhHHHHc
Confidence            56899999999999986 343       111220  0001344555555566665543 2112      22344556679


Q ss_pred             CCCeeeecCCCChhHHH---HHHHhcC-CCCcEEeecCCHHHHHHHH--HhCCCEEEEe-cCCCCCchHHHHHHHHHhhc
Q 037779          114 GVDYVDESEVLTPADEE---NHINKHN-FRVPFVCGCRNLGESLRRI--REGAAMIRTK-GEAGTGNIVEAVRHVRSVMG  186 (310)
Q Consensus       114 Gad~v~~~~~~~~~~~~---~~~~~~~-~~l~v~~~v~t~~ea~~a~--~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~  186 (310)
                      |+|+|..+...+..++.   +.++.++ ....+++-+.+.+-+...-  -.-+|.|.+- |.     +.           
T Consensus        87 ~vD~ialSFVr~~~Dv~~~r~~l~~~~~~~~~iiaKIE~~~al~nldeIi~~sDgImIaRGD-----Lg-----------  150 (246)
T d1e0ta2          87 GVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGD-----LG-----------  150 (246)
T ss_dssp             TCSEEEESSCCSHHHHHHHHHHHHTTTCTTCEEEEEECSHHHHHTHHHHHHHSSEEEEEHHH-----HH-----------
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHHhCCCCceEEEEecchhhhhchHHHHhhcceEEEEccc-----hh-----------
Confidence            99999877665655544   3444443 3477888887766433221  1345777774 21     00           


Q ss_pred             ceecccccCchhHHhhhccCCC-cHHHHHHHHhcCCCCEEEEccCCC---------CCH---HHHHHHHHcCCCEEEEcc
Q 037779          187 DIRVLRNMDDDEVFTFAKNIAA-PYDLVMQTKQLGRLPVVHFAAGGV---------ATP---ADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       187 ~~~~l~~~~~d~~~~~~~~~~~-~~~l~~~i~~~~~iPVv~ia~GGI---------~t~---~di~~~~~~GadgV~VGs  253 (310)
                           ..++.+.+       +. -..+++...+ ...||+  .+..+         -|.   .|+.-++..|+|+|++..
T Consensus       151 -----~ei~~e~v-------p~~Qk~ii~~~~~-~~kpvi--~ATq~LeSM~~~p~PTRAEv~Dv~nav~dG~D~vmLs~  215 (246)
T d1e0ta2         151 -----VEIPVEEV-------IFAQKMMIEKCIR-ARKVVI--TATMMLDSMIKNPRPTDAEAGDVANAILDGTDAVMLSG  215 (246)
T ss_dssp             -----HHSCHHHH-------HHHHHHHHHHHHH-HTCEEE--EECC---------CCCHHHHHHHHHHHHHTCSEEEECC
T ss_pred             -----hhCCHHHH-------HHHHHHHHHHHHH-hCCCEE--EehhhhhhhhcCCCCchHHHHHHHHHHHhCCcEEEEcc
Confidence                 00000000       00 0112222222 245774  23333         233   356666778999999988


Q ss_pred             ccccCCCHHHHHHHHHHHHHc
Q 037779          254 GVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       254 ai~~~~dp~~~~~~~~~~~~~  274 (310)
                      -=..+.+|.+.++.+.+.+..
T Consensus       216 ETa~G~~P~~~v~~l~~i~~~  236 (246)
T d1e0ta2         216 ESAKGKYPLEAVSIMATICER  236 (246)
T ss_dssp             C------CHHHHHHHHHHHHH
T ss_pred             ccccCCCHHHHHHHHHHHHHH
Confidence            777788899888887776543

>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Putative flavin oxidoreducatase TM0096
species: Thermotoga maritima [TaxId: 2336]

Probab=94.30  E-value=0.057  Score=47.09  Aligned_cols=86  Identities=19%  Similarity=0.084  Sum_probs=60.3

Q ss_pred             cccceeeecCCccccCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHH
Q 037779           27 KVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVE  106 (310)
Q Consensus        27 ~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~  106 (310)
                      ..|+..+.|.|+- +....+.++.++++|+++|.+..+... .+ +.|   ..+.+.+++++.  ++||+++..+.+.++
T Consensus       122 ~~pvsvK~RlG~d-~~~~~~~~~~l~~~G~~~itvH~Rt~~-q~-~~~---~a~~~~i~~~~~--~ipvi~NGdI~s~~d  193 (305)
T d1vhna_         122 SGKFSVKTRLGWE-KNEVEEIYRILVEEGVDEVFIHTRTVV-QS-FTG---RAEWKALSVLEK--RIPTFVSGDIFTPED  193 (305)
T ss_dssp             SSEEEEEEESCSS-SCCHHHHHHHHHHTTCCEEEEESSCTT-TT-TSS---CCCGGGGGGSCC--SSCEEEESSCCSHHH
T ss_pred             ccccccccccCcc-cchhhHHHHHHHHhCCcEEEechhhhh-hc-ccc---chhhhHHHhhhh--hhhhhcccccccHHH
Confidence            4688999999982 223368999999999999954423322 11 112   345677776664  699999988887777


Q ss_pred             HHHHHH-cCCCeeee
Q 037779          107 AQILEA-IGVDYVDE  120 (310)
Q Consensus       107 ~~~~~~-aGad~v~~  120 (310)
                      +..+.+ .|+|+|-+
T Consensus       194 ~~~~l~~tg~dgVMi  208 (305)
T d1vhna_         194 AKRALEESGCDGLLV  208 (305)
T ss_dssp             HHHHHHHHCCSEEEE
T ss_pred             HHHHHHhcCCCeEeh
Confidence            766554 79999873

>d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Leishmania mexicana [TaxId: 5665]

Probab=93.99  E-value=1.5  Score=36.85  Aligned_cols=195  Identities=16%  Similarity=0.164  Sum_probs=107.9

Q ss_pred             CCHHHHHHHHHcCCcEEEecccccchhhhcCCCC--CCCChHHHHHHHhhcCcceEee-cccc-------chHHHHHHHH
Q 037779           43 VTPEQARIAEEAGACAVMALERVPADIRAQGGVA--RMSDPQLIKQIKSSVTIPVMAK-ARIG-------HFVEAQILEA  112 (310)
Q Consensus        43 ~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~--~~~~~~~i~~i~~~~~lPv~~k-d~i~-------~~~~~~~~~~  112 (310)
                      .+++..+.+.++|++.+ =+|       ..+|+.  .....+.++++.+..+.|+-+. |..+       +........+
T Consensus        32 ~~~~~l~~li~aGvdv~-RiN-------~SHg~~e~~~~~i~~iR~~~~~~g~~v~i~~d~~gp~~~t~kd~~di~~a~~  103 (258)
T d1pkla2          32 QSVEALKGLIQSGMSVA-RMN-------FSHGSHEYHQTTINNVRQAAAELGVNIAIALDTKGPPAVSAKDRVDLQFGVE  103 (258)
T ss_dssp             CSHHHHHHHHHHTEEEE-EEE-------TTSSCHHHHHHHHHHHHHHHHHTTCCCEEEEECCCCCSSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCEE-EEE-------CCCCCHHHHHHHHHHHHHHHHHhCCCccccccccccccccccHHHHHHHHHh
Confidence            46899999999999976 343       111220  0001334555555666665442 2222       1234556677


Q ss_pred             cCCCeeeecCCCChhH---HHHHHHhcCCCCcEEeecCCHHHHHHHH--HhCCCEEEEe-cCCCCCchHHHHHHHHHhhc
Q 037779          113 IGVDYVDESEVLTPAD---EENHINKHNFRVPFVCGCRNLGESLRRI--REGAAMIRTK-GEAGTGNIVEAVRHVRSVMG  186 (310)
Q Consensus       113 aGad~v~~~~~~~~~~---~~~~~~~~~~~l~v~~~v~t~~ea~~a~--~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~  186 (310)
                      .|+|++..+...+..+   +.+.+.+.+....+++-+.+.+-+...-  -.-+|.|.+- |.-+-               
T Consensus       104 ~~vD~ialSFVrs~~Dv~~ir~~l~~~~~~~~iiaKIE~~~al~nldeI~~~sDgImIaRGDLg~---------------  168 (258)
T d1pkla2         104 QGVDMIFASFIRSAEQVGDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGV---------------  168 (258)
T ss_dssp             HTCSEEEETTCCSHHHHHHHHHHHCGGGTTSEEEEEECSHHHHHTHHHHHHHSSEEEECHHHHTT---------------
T ss_pred             cCCCeEEEeCCCCHHHHHHHHHHHHHcCCCCceEEEecCchhhhhhhhHHhhCCeeeEechhhhh---------------
Confidence            9999998776655554   4444444455677888887766443221  2345777764 21000               


Q ss_pred             ceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEE-------ccCCCCCHH---HHHHHHHcCCCEEEEccccc
Q 037779          187 DIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHF-------AAGGVATPA---DAAMMMQLGCDGVFVGSGVF  256 (310)
Q Consensus       187 ~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~i-------a~GGI~t~~---di~~~~~~GadgV~VGsai~  256 (310)
                            .+..+.+      ...-..+++...+ ...||++.       ....+-|..   |+.-++..|+|+|++..-=.
T Consensus       169 ------ei~~e~v------p~~Qk~Ii~~~~~-~~kpvivATq~LeSM~~~~~PTRAEv~Dvanav~dG~D~imLs~ETa  235 (258)
T d1pkla2         169 ------EIPAEKV------VVAQKILISKCNV-AGKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETA  235 (258)
T ss_dssp             ------TSCHHHH------HHHHHHHHHHHHH-HTCCEEECSSSSGGGGTSSSCCHHHHHHHHHHHHHTCSEEEESHHHH
T ss_pred             ------hcchhhh------hhHHHHHHHHHHH-cCCCEEEEeceeHhhccCCCCCHHHHHHHHHHHHhCCCEEEEccccc
Confidence                  0000000      0001222223222 35688530       123444444   45566677999999998888


Q ss_pred             cCCCHHHHHHHHHHHHH
Q 037779          257 KSGDPVRRARAIVQAVT  273 (310)
Q Consensus       257 ~~~dp~~~~~~~~~~~~  273 (310)
                      ...+|.+.++.+.+.+.
T Consensus       236 ~G~~P~~~V~~l~~i~~  252 (258)
T d1pkla2         236 KGKYPNEVVQYMARICL  252 (258)
T ss_dssp             TCSCHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHH
Confidence            88899999888877654

>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Glycolate oxidase
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=93.69  E-value=0.25  Score=43.45  Aligned_cols=86  Identities=16%  Similarity=0.147  Sum_probs=63.1

Q ss_pred             hHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec--------CCCChhHHHHHHHh-cCCCCcEEee--cCCH
Q 037779           81 PQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES--------EVLTPADEENHINK-HNFRVPFVCG--CRNL  149 (310)
Q Consensus        81 ~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~--------~~~~~~~~~~~~~~-~~~~l~v~~~--v~t~  149 (310)
                      .+.++.+++..+.|+++|.... .+.+..+..+|++.+..+        ...++.+....+.+ .+.+++++++  +++.
T Consensus       213 ~~~v~~l~~~~~~~~~~kg~~~-~~da~~a~~~g~~~~~vsnhggr~ld~~~~~~~~l~~i~~~~~~~~~iiadGGIR~G  291 (359)
T d1goxa_         213 WKDVAWLQTITSLPILVKGVIT-AEDARLAVQHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVRRG  291 (359)
T ss_dssp             HHHHHHHHHHCCSCEEEECCCS-HHHHHHHHHTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCCSH
T ss_pred             HHHHHHHHhhcccceeeecccc-hHHHHHHHHccccceecccccccccccccchhhhchhhhhccCCccceeeccCcCcH
Confidence            4557788888889999987654 367788899999998732        11233344444444 4445788885  9999


Q ss_pred             HHHHHHHHhCCCEEEEec
Q 037779          150 GESLRRIREGAAMIRTKG  167 (310)
Q Consensus       150 ~ea~~a~~~Gad~I~v~g  167 (310)
                      .|+.+++.+|||++++..
T Consensus       292 ~Di~KALaLGAd~vgigr  309 (359)
T d1goxa_         292 TDVFKALALGAAGVFIGR  309 (359)
T ss_dssp             HHHHHHHHHTCSEEEECH
T ss_pred             HHHHHHHHcCCCEEEEcH
Confidence            999999999999999864

>d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.46  E-value=0.23  Score=41.22  Aligned_cols=32  Identities=25%  Similarity=0.263  Sum_probs=24.3

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHHc-------CCCEEEEccc
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQL-------GCDGVFVGSG  254 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~~-------GadgV~VGsa  254 (310)
                      ++-|-  ++|||.|.+++.+++++       |+.-+...|.
T Consensus       184 ~vgiK--asGGIrt~~~A~~~i~a~~~~~~~ga~RiGtSs~  222 (226)
T d1vcva1         184 RLGVK--MAGGIRTREQAKAIVDAIGWGEDPARVRLGTSTP  222 (226)
T ss_dssp             CCEEE--EESSCCSHHHHHHHHHHHCSCSCTTTEEEEESCG
T ss_pred             ceeEE--CcCCCCCHHHHHHHHHhhhcCCCCCCEEEecCCh
Confidence            45664  58999999999999987       7766555443

>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.33  E-value=0.33  Score=43.16  Aligned_cols=168  Identities=15%  Similarity=0.215  Sum_probs=96.3

Q ss_pred             cCcceEee--ccccchHHHHHHHHcCCCeeeecCCCChhHHHHHHHh-cC------------CCCcE--EeecCCHHHHH
Q 037779           91 VTIPVMAK--ARIGHFVEAQILEAIGVDYVDESEVLTPADEENHINK-HN------------FRVPF--VCGCRNLGESL  153 (310)
Q Consensus        91 ~~lPv~~k--d~i~~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~-~~------------~~l~v--~~~v~t~~ea~  153 (310)
                      .++|++.-  |-+..++.+..+...|.=.++ +...++++..+.+++ +.            ..+.+  .++....+.+.
T Consensus        44 l~iPIiss~MDtV~~~~mA~~la~~Gglgvl-hr~~~~e~~~~~v~~v~~~e~~~~~~~d~~~~~~v~~~~~~~~~~r~~  122 (368)
T d2cu0a1          44 LNIPILSAAMDTVTEWEMAVAMAREGGLGVI-HRNMGIEEQVEQVKRVKRAEKYKNAVRDENGELLVAAAVSPFDIKRAI  122 (368)
T ss_dssp             ESSSEEECCCTTTCSHHHHHHHHHTTCEEEE-CSSSCHHHHHHHHHHHHTCCCCTTCCBCTTSCBCCEEEECTTCHHHHH
T ss_pred             cCCCEEeCCCCCcCCHHHHHHHHHCCCeeEe-cccCCHHHHHHHHHhhhhhhhccccccccCccEEEEeccChHHHHHHH
Confidence            47899874  666666777777778866664 444566766665543 11            11222  33334555666


Q ss_pred             HHHHhCCCEEEEecC-CCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCC
Q 037779          154 RRIREGAAMIRTKGE-AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGV  232 (310)
Q Consensus       154 ~a~~~Gad~I~v~g~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI  232 (310)
                      ...+.|+|++.+... .+..+                                   ..+.++.+++..++|+  | .|++
T Consensus       123 ~l~~aGvd~ivID~A~Gh~~~-----------------------------------~i~~lK~ir~~~~~~v--I-aGNV  164 (368)
T d2cu0a1         123 ELDKAGVDVIVVDTAHAHNLK-----------------------------------AIKSMKEMRQKVDADF--I-VGNI  164 (368)
T ss_dssp             HHHHTTCSEEEEECSCCCCHH-----------------------------------HHHHHHHHHHTCCSEE--E-EEEE
T ss_pred             HHHHcCCCEEEecCcccchhh-----------------------------------hhhhhhhhhhhcccce--e-eccc
Confidence            677899999988632 12110                                   1233455555455676  4 3999


Q ss_pred             CCHHHHHHHHHcCCCEEEEccc---ccc------CCCHH-HHHHHHHHHHHcC----------CCh-hhHHhhhhccCCc
Q 037779          233 ATPADAAMMMQLGCDGVFVGSG---VFK------SGDPV-RRARAIVQAVTNY----------SDP-DVLAEVSCGLGEA  291 (310)
Q Consensus       233 ~t~~di~~~~~~GadgV~VGsa---i~~------~~dp~-~~~~~~~~~~~~~----------~~~-~~~~~~~~~~~~~  291 (310)
                      .|++.+..+  .|||+|-||-.   ++.      -.-|. ..+.+..+..+.+          +.+ ++...+++..-..
T Consensus       165 aT~e~~~~l--~gaD~VkVGIG~Gs~CTTr~~tGvG~Pq~sAi~e~~~~~~~~~~~iiADGGi~~~Gdi~KAla~GAd~V  242 (368)
T d2cu0a1         165 ANPKAVDDL--TFADAVKVGIGPGSICTTRIVAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAV  242 (368)
T ss_dssp             CCHHHHTTC--TTSSEEEECSSCSTTBCHHHHTCCCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHTTCSEE
T ss_pred             cCHHHHHhh--hcCcceeecccCcccccchhhcccccchHHHHHHHHHHHhccCCeeEecCCCCcCChhheeeeecccee
Confidence            999887543  59999998742   221      11221 2223333333332          233 6667777777777


Q ss_pred             eecccccc
Q 037779          292 MVGIDLND  299 (310)
Q Consensus       292 ~~~~~~~~  299 (310)
                      |+|--|..
T Consensus       243 MlG~~lAg  250 (368)
T d2cu0a1         243 MLGNLLAG  250 (368)
T ss_dssp             EESTTTTT
T ss_pred             eccchhcc
Confidence            77776654

>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermotoga maritima [TaxId: 2336]

Probab=93.33  E-value=0.56  Score=39.38  Aligned_cols=111  Identities=16%  Similarity=0.223  Sum_probs=76.2

Q ss_pred             CCHHHHHHHHHhCCCEEEEecC--CCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCE
Q 037779          147 RNLGESLRRIREGAAMIRTKGE--AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPV  224 (310)
Q Consensus       147 ~t~~ea~~a~~~Gad~I~v~g~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPV  224 (310)
                      .++.+..+.++.||+.+.|...  .|.                                    .+.+.+..+++..++||
T Consensus        61 ~d~~~~a~~ye~GA~aiSVLTd~~~F~------------------------------------Gs~~~l~~vr~~~~~Pi  104 (251)
T d1i4na_          61 ASLEDFIRMYDELADAISILTEKHYFK------------------------------------GDPAFVRAARNLTCRPI  104 (251)
T ss_dssp             CCHHHHHHHHHHHCSEEEEECCCSSSC------------------------------------CCTHHHHHHHTTCCSCE
T ss_pred             ccHHHHHHHHhcCCcceEEecccCCCC------------------------------------CCHHHHHHHhhcccCch
Confidence            3566666667789999988622  122                                    24556677777778898


Q ss_pred             EEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcC--------CChhhHHhhhhccCCceeccc
Q 037779          225 VHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY--------SDPDVLAEVSCGLGEAMVGID  296 (310)
Q Consensus       225 v~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~  296 (310)
                      +. =..=| ++-++.+...+|||+|++--+++.    .+.+++|.+.....        +++.-+..+....|..+.||.
T Consensus       105 Lr-KDFIi-d~~QI~ea~~~GADaiLLI~~~L~----~~~l~~l~~~a~~lgle~LvEvh~~~El~~al~~~~a~iiGIN  178 (251)
T d1i4na_         105 LA-KDFYI-DTVQVKLASSVGADAILIIARILT----AEQIKEIYEAAEELGMDSLVEVHSREDLEKVFSVIRPKIIGIN  178 (251)
T ss_dssp             EE-ECCCC-STHHHHHHHHTTCSEEEEEGGGSC----HHHHHHHHHHHHTTTCEEEEEECSHHHHHHHHTTCCCSEEEEE
T ss_pred             hh-hhhhh-CHHHHHHHHhhccceEEeeccccc----HHHHHHHHHHHHHhCCeeecccCCHHHHHHHhcccccceeeee
Confidence            63 34445 799999999999999999988886    23466666665543        344555555556677888885


Q ss_pred             ccc
Q 037779          297 LND  299 (310)
Q Consensus       297 ~~~  299 (310)
                      -.|
T Consensus       179 nRd  181 (251)
T d1i4na_         179 TRD  181 (251)
T ss_dssp             CBC
T ss_pred             ecc
Confidence            444

>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermus thermophilus [TaxId: 274]

Probab=92.99  E-value=0.19  Score=42.44  Aligned_cols=80  Identities=13%  Similarity=0.147  Sum_probs=54.7

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc-C-------CChhh
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN-Y-------SDPDV  280 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~-~-------~~~~~  280 (310)
                      +.+.+..+++..++||+  .--=|-++-++.+...+|||+|++-.++... .    ..+|.+.... +       ++..-
T Consensus        94 s~~dl~~v~~~~~iPvL--rKDFIid~~QI~ea~~~GADaVLLIaall~~-~----l~~l~~~A~~lgl~~LVEvh~~~E  166 (254)
T d1vc4a_          94 SLLDLKRVREAVDLPLL--RKDFVVDPFMLEEARAFGASAALLIVALLGE-L----TGAYLEEARRLGLEALVEVHTERE  166 (254)
T ss_dssp             CHHHHHHHHHHCCSCEE--EESCCCSHHHHHHHHHTTCSEEEEEHHHHGG-G----HHHHHHHHHHHTCEEEEEECSHHH
T ss_pred             cHHHHHHHHHHcCCCcc--cCCccccHHHHHHHHhccchHHHHHHHHHHH-H----HHHHHHHHHHhCCceEEEeccHHH
Confidence            45666777777789995  4667778999999999999999999998752 2    2333333222 2       22222


Q ss_pred             HHhhhhccCCceeccc
Q 037779          281 LAEVSCGLGEAMVGID  296 (310)
Q Consensus       281 ~~~~~~~~~~~~~~~~  296 (310)
                       .+.+-..|..+.||.
T Consensus       167 -l~~a~~~~a~iIGIN  181 (254)
T d1vc4a_         167 -LEIALEAGAEVLGIN  181 (254)
T ss_dssp             -HHHHHHHTCSEEEEE
T ss_pred             -HhhhhcCCCCEEEEe
Confidence             344556688999985

>d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]

Probab=92.83  E-value=0.075  Score=47.62  Aligned_cols=51  Identities=22%  Similarity=0.193  Sum_probs=41.5

Q ss_pred             HHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcC-CCEEEEccccccCCCHHHH
Q 037779          211 DLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLG-CDGVFVGSGVFKSGDPVRR  264 (310)
Q Consensus       211 ~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~G-adgV~VGsai~~~~dp~~~  264 (310)
                      .+.+.+++..++||  ++.||+ +++.+.++++.| +|.|.+|+.++..++....
T Consensus       297 ~~~~~ik~~~~~pv--~~~Gg~-~~~~ae~~l~~G~~DlV~~gR~liaDPdlv~K  348 (380)
T d1q45a_         297 KLMKSLRMAYNGTF--MSSGGF-NKELGMQAVQQGDADLVSYGRLFIANPDLVSR  348 (380)
T ss_dssp             HHHHHHHHHSCSCE--EEESSC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHH
T ss_pred             HHHHHHhhccCCcE--EeCCCC-CHHHHHHHHHcCCccchhhhHHHHHCccHHHH
Confidence            35566677678899  567999 699999999986 9999999999998875543

>d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: CheY protein
species: Thermotoga maritima [TaxId: 2336]

Probab=92.52  E-value=1.3  Score=32.05  Aligned_cols=87  Identities=10%  Similarity=0.128  Sum_probs=55.6

Q ss_pred             CCcEEeecCCHHHHHHHH-HhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHH
Q 037779          139 RVPFVCGCRNLGESLRRI-REGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTK  217 (310)
Q Consensus       139 ~l~v~~~v~t~~ea~~a~-~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~  217 (310)
                      |..+...+++.+++...+ +..+|++.+.-                      .++.             ...+++++.++
T Consensus        25 g~~v~~~a~~~~~al~~~~~~~~dliilD~----------------------~mp~-------------~~G~e~~~~ir   69 (118)
T d1u0sy_          25 GYEVAGEATNGREAVEKYKELKPDIVTMDI----------------------TMPE-------------MNGIDAIKEIM   69 (118)
T ss_dssp             TCEEEEEESSHHHHHHHHHHHCCSEEEEEC----------------------SCGG-------------GCHHHHHHHHH
T ss_pred             CCceEEEECCHHHHHHHHHhccCCEEEEec----------------------CCCC-------------CCHHHHHHHHH
Confidence            455555567887776554 45677776641                      1111             12467777776


Q ss_pred             hc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHH
Q 037779          218 QL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARA  267 (310)
Q Consensus       218 ~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~  267 (310)
                      +. .++||+++  .|-++.+...++++.||+++     +.++-++.+..+.
T Consensus        70 ~~~~~~pvi~l--s~~~~~~~~~~a~~~Ga~~y-----l~KP~~~~~L~~~  113 (118)
T d1u0sy_          70 KIDPNAKIIVC--SAMGQQAMVIEAIKAGAKDF-----IVKPFQPSRVVEA  113 (118)
T ss_dssp             HHCTTCCEEEE--ECTTCHHHHHHHHHTTCCEE-----EESSCCHHHHHHH
T ss_pred             HhCCCCcEEEE--EccCCHHHHHHHHHcCCCEE-----EECCCCHHHHHHH
Confidence            54 57898755  56678999999999999987     4455455444433

>d2pl1a1 c.23.1.1 (A:1-119) PhoP receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoP receiver domain
species: Escherichia coli [TaxId: 562]

Probab=92.45  E-value=1.2  Score=32.21  Aligned_cols=57  Identities=12%  Similarity=0.092  Sum_probs=40.6

Q ss_pred             cHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779          209 PYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV  272 (310)
Q Consensus       209 ~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~  272 (310)
                      .+++++++++. .++|++++  .+-.+.++..+++++||++++     .++-++.+....+...+
T Consensus        59 G~e~~~~i~~~~~~~pvi~l--t~~~~~~~~~~a~~~Ga~~yl-----~KP~~~~~L~~~v~~~l  116 (119)
T d2pl1a1          59 GLSLIRRWRSNDVSLPILVL--TARESWQDKVEVLSAGADDYV-----TKPFHIEEVMARMQALM  116 (119)
T ss_dssp             HHHHHHHHHHTTCCSCEEEE--ESCCCHHHHHHHHHTTCSEEE-----ESSCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhcCcccceEee--eccCCHHHHHHHHHcCCCEEE-----ECCCCHHHHHHHHHHHH
Confidence            46778888775 57899754  556688999999999999974     56556665555554443

>d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Nitrate/nitrite response regulator (NarL), receiver domain
species: Escherichia coli [TaxId: 562]

Probab=92.33  E-value=1.5  Score=32.46  Aligned_cols=94  Identities=15%  Similarity=0.151  Sum_probs=62.8

Q ss_pred             CCcEEeecCCHHHHHHHH-HhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHH
Q 037779          139 RVPFVCGCRNLGESLRRI-REGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTK  217 (310)
Q Consensus       139 ~l~v~~~v~t~~ea~~a~-~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~  217 (310)
                      +..++..+.+.+++.... +..+|++.+.-                      .++.             ...++++++++
T Consensus        27 ~~~~v~~a~~~~~al~~~~~~~~DlvllD~----------------------~mP~-------------~~G~el~~~ir   71 (138)
T d1a04a2          27 DITVVGEASNGEQGIELAESLDPDLILLDL----------------------NMPG-------------MNGLETLDKLR   71 (138)
T ss_dssp             TEEEEEEESSHHHHHHHHHHHCCSEEEEET----------------------TSTT-------------SCHHHHHHHHH
T ss_pred             CcEEEEEECCHHHHHHHHHhcCCCEEEEec----------------------CCCC-------------CCHHHHHHHHH
Confidence            345556678888876554 45678776641                      1111             12477888887


Q ss_pred             hc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          218 QL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       218 ~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      +. .+.|++++  .+-.+.+.+.+++++||++++     .++-++.+..+.+.+.+..
T Consensus        72 ~~~~~~~vivl--t~~~~~~~~~~a~~~Ga~~yl-----~Kp~~~~~L~~~i~~v~~g  122 (138)
T d1a04a2          72 EKSLSGRIVVF--SVSNHEEDVVTALKRGADGYL-----LKDMEPEDLLKALHQAAAG  122 (138)
T ss_dssp             HSCCCSEEEEE--ECCCCHHHHHHHHHTTCSEEE-----ETTCCHHHHHHHHHHHHHS
T ss_pred             hhCCCCCEEEE--EEECCHHHHHHHHHcCCCEEE-----ECCCCHHHHHHHHHHHHCC
Confidence            74 46788755  444578999999999999865     5666777777777666653

>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.25  E-value=2.7  Score=35.09  Aligned_cols=83  Identities=19%  Similarity=0.213  Sum_probs=47.0

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHH---HHHHHhhc--CcceEeeccccc----hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQL---IKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~---i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGad  116 (310)
                      +.++.+.+.|+++|....       ..+....++..+.   ++.+.+..  ++|+++...-..    .+.++.+.++|||
T Consensus        26 ~~i~~l~~~Gv~Gi~v~G-------stGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~st~~ai~~a~~A~~~Gad   98 (295)
T d1o5ka_          26 RLVRYQLENGVNALIVLG-------TTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGAN   98 (295)
T ss_dssp             HHHHHHHHTTCCEEEESS-------GGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHcCCCEEEECe-------eccchhhCCHHHHHHHhhhhccccccCCceEeecccccHHHHHHHHHHHHHcCCC
Confidence            678889999999985431       0010111222222   33333333  589988754332    2456778889999


Q ss_pred             eee-ecCC---CChhHHHHHHHh
Q 037779          117 YVD-ESEV---LTPADEENHINK  135 (310)
Q Consensus       117 ~v~-~~~~---~~~~~~~~~~~~  135 (310)
                      .+. .+..   .+..++.+.++.
T Consensus        99 ~v~v~pP~y~~~s~~~i~~~~~~  121 (295)
T d1o5ka_          99 GVLVVTPYYNKPTQEGLYQHYKY  121 (295)
T ss_dssp             EEEEECCCSSCCCHHHHHHHHHH
T ss_pred             EEEEeCCCCCCCCHHHHHHHHHH
Confidence            987 3321   245556665554

>d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Ketopantoate hydroxymethyltransferase PanB
domain: Ketopantoate hydroxymethyltransferase PanB
species: Escherichia coli [TaxId: 562]

Probab=92.20  E-value=2.8  Score=35.11  Aligned_cols=102  Identities=7%  Similarity=-0.021  Sum_probs=53.0

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChH----HHHHHHhhcCcceEeeccc-c---ch----HHHH
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQ----LIKQIKSSVTIPVMAKARI-G---HF----VEAQ  108 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~----~i~~i~~~~~lPv~~kd~i-~---~~----~~~~  108 (310)
                      .+.|...|+.+.++|+|.|.+.-.+.... ...-+...-..+    ..+.+++...-++++-|.- +   ..    ..+.
T Consensus        21 TayD~~~A~~~~~agvDiiLVGDSlgmv~-~G~~~T~~vt~d~mi~H~~aV~rga~~~~vv~DmPf~sy~~~~~a~~~a~   99 (262)
T d1m3ua_          21 TAYDYSFAKLFADEGLNVMLVGDSLGMTV-QGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFENAA   99 (262)
T ss_dssp             ECCSHHHHHHHHHHTCCEEEECTTHHHHT-TCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTSSSSHHHHHHHHH
T ss_pred             EcCCHHHHHHHHHCCCCEEEEcCcHHhcc-cCCCCcceechHhHHHHHHHHHhccccceeEeccccccchhhHHHHHHHH
Confidence            45678999999999999985431110000 000111122233    3446666554445444322 2   11    2234


Q ss_pred             HHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEee
Q 037779          109 ILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCG  145 (310)
Q Consensus       109 ~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~  145 (310)
                      .+.+.|||.|-..-.....+.++.+..  .+++++.-
T Consensus       100 ~l~~~GAdaVKlEgg~~~~~~I~~L~~--~gIPV~gH  134 (262)
T d1m3ua_         100 TVMRAGANMVKIEGGEWLVETVQMLTE--RAVPVCGH  134 (262)
T ss_dssp             HHHHTTCSEEECCCSGGGHHHHHHHHH--TTCCEEEE
T ss_pred             HHHhcCCcEEEeccchhHHHHHHHHHH--cCCeEEee
Confidence            556699999974322233456666655  35666654

>d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.16  E-value=0.065  Score=45.69  Aligned_cols=39  Identities=26%  Similarity=0.392  Sum_probs=33.2

Q ss_pred             HHHHHHHcCCCEEEEccccc-cCCCHHHHHHHHHHH-HHcC
Q 037779          237 DAAMMMQLGCDGVFVGSGVF-KSGDPVRRARAIVQA-VTNY  275 (310)
Q Consensus       237 di~~~~~~GadgV~VGsai~-~~~dp~~~~~~~~~~-~~~~  275 (310)
                      +..++++.|+|.++||++|+ .++||.+.++.|++. +++|
T Consensus       219 tp~eAi~~Gad~iVVGR~I~~aa~dp~~aak~~r~~~~~~~  259 (267)
T d1dqwa_         219 TVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRKAGWEAY  259 (267)
T ss_dssp             CHHHHHHTTCCEEEECGGGTSTTCCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHCCCCEEEECChhcCCCCCHHHHHHHHHHHHHHHH
Confidence            35667889999999999998 578999999999998 6644

>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.13  E-value=1.1  Score=37.42  Aligned_cols=113  Identities=15%  Similarity=0.245  Sum_probs=75.7

Q ss_pred             CCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEE
Q 037779          147 RNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVH  226 (310)
Q Consensus       147 ~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~  226 (310)
                      .++.+..+..+.||+.+.|....                      .            -+..+.+.+..+++..++||+.
T Consensus        63 ~d~~~~a~~~~~gA~aiSVLTd~----------------------~------------~F~Gs~~dl~~v~~~~~~PiLr  108 (247)
T d1a53a_          63 RDPIEYSKFMERYAVGLSILTEE----------------------K------------YFNGSYETLRKIASSVSIPILM  108 (247)
T ss_dssp             CCHHHHHHHHTTTCSEEEEECCC----------------------T------------TTCCCHHHHHHHHHHCCSCEEE
T ss_pred             cCHHHHHHHHHhCCCeEEEecCc----------------------c------------ccccchHHHHHHHhccccceee
Confidence            35666667778899999886220                      0            0122456667777777889863


Q ss_pred             EccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcC-CC-------hhhHHhhhhccCCceeccccc
Q 037779          227 FAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY-SD-------PDVLAEVSCGLGEAMVGIDLN  298 (310)
Q Consensus       227 ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~~  298 (310)
                       =..=| ++-++.+...+|||+|++--+++.    ...+++|.+..+.. .+       +.- .+.+...|..+.||.=.
T Consensus       109 -KDFIi-d~~QI~ea~~~GADaiLLI~~~L~----~~~l~~l~~~a~~lgl~~LvEvh~~~E-l~~a~~~~a~iIGINnR  181 (247)
T d1a53a_         109 -KDFIV-KESQIDDAYNLGADTVLLIVKILT----ERELESLLEYARSYGMEPLIEINDEND-LDIALRIGARFIGINSR  181 (247)
T ss_dssp             -ESCCC-SHHHHHHHHHHTCSEEEEEGGGSC----HHHHHHHHHHHHTTTCCCEEEECSHHH-HHHHHHTTCSEEEEESB
T ss_pred             -ccccc-ChHHHHHHHHhhcchhhhhhhhcc----HHHHHHHHHHHHHHhhhHHhhcCCHHH-HHHHHhCCCCeEeeecc
Confidence             34444 799999999999999999988884    34566777665553 23       222 33455678999998654


Q ss_pred             cc
Q 037779          299 DV  300 (310)
Q Consensus       299 ~~  300 (310)
                      |.
T Consensus       182 nL  183 (247)
T d1a53a_         182 DL  183 (247)
T ss_dssp             CT
T ss_pred             Ch
Confidence            43

>d2r25b1 c.23.1.1 (B:1087-1214) Response regulator Sin1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator Sin1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.11  E-value=1.5  Score=32.30  Aligned_cols=57  Identities=11%  Similarity=0.079  Sum_probs=38.5

Q ss_pred             cHHHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779          209 PYDLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV  272 (310)
Q Consensus       209 ~~~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~  272 (310)
                      .+++++.+++.  ..+||+++  .+-.+.++..+++++|++++     +.++-++.+..+.+.+.+
T Consensus        66 G~el~~~ir~~~~~~~piI~l--T~~~~~~~~~~~~~~G~~~~-----l~KP~~~~~L~~~l~~~~  124 (128)
T d2r25b1          66 GLLSTKMIRRDLGYTSPIVAL--TAFADDSNIKECLESGMNGF-----LSKPIKRPKLKTILTEFC  124 (128)
T ss_dssp             HHHHHHHHHHHSCCCSCEEEE--ESCCSHHHHHHHHHTTCSEE-----EESSCCHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHccCCCCeEEEE--ECCCCHHHHHHHHHcCCCEE-----EECCCCHHHHHHHHHHHH
Confidence            46777777653  36788654  55568999999999999987     455555555444444443

>d2a9pa1 c.23.1.1 (A:2-118) DNA-binding response regulator MicA, N-terminal domain {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: DNA-binding response regulator MicA, N-terminal domain
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=91.86  E-value=1.6  Score=31.50  Aligned_cols=57  Identities=12%  Similarity=0.208  Sum_probs=40.7

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV  272 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~  272 (310)
                      .+++++.+++..++||+++  .|-.+.++..+++++||+.+     |.++-++.+....+...+
T Consensus        59 G~~~~~~i~~~~~~pvI~l--t~~~~~~~~~~a~~~Ga~d~-----l~KP~~~~~L~~~i~~~l  115 (117)
T d2a9pa1          59 GLEVAKTIRKTSSVPILML--SAKDSEFDKVIGLELGADDY-----VTKPFSNRELQARVKALL  115 (117)
T ss_dssp             HHHHHHHHHTTCCCCEEEE--ESCCSHHHHHHHHHHTCSEE-----EESSCCHHHHHHHHHHHH
T ss_pred             ccHHHHHHHhCCCCCEEEE--ecCCCHHHHHHHHHcCCCEE-----EECCCCHHHHHHHHHHHh
Confidence            4678888888778999755  44557899999999999986     455556665555554443

>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=91.81  E-value=1.2  Score=36.89  Aligned_cols=110  Identities=18%  Similarity=0.095  Sum_probs=63.0

Q ss_pred             HHHHHHHHcCCcEE-EecccccchhhhcCCCCCCCChHHHHHHHh---hcCcceEeecccc----chH----HHHHHHHc
Q 037779           46 EQARIAEEAGACAV-MALERVPADIRAQGGVARMSDPQLIKQIKS---SVTIPVMAKARIG----HFV----EAQILEAI  113 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I-~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~---~~~lPv~~kd~i~----~~~----~~~~~~~a  113 (310)
                      ..++.+.+.||+.| +++|     ...+    .....+.++++.+   ..+.+  +|..+.    +.+    -.+.+.++
T Consensus        92 ~E~~~Ai~~GAdEID~Vin-----~~~~----~~~~~~ev~~~~~~~~~~g~~--lKVIlEt~~L~~~~i~~a~~~a~~a  160 (234)
T d1n7ka_          92 VEAQTVLEAGATELDVVPH-----LSLG----PEAVYREVSGIVKLAKSYGAV--VKVILEAPLWDDKTLSLLVDSSRRA  160 (234)
T ss_dssp             HHHHHHHHHTCCEEEECCC-----GGGC----HHHHHHHHHHHHHHHHHTTCE--EEEECCGGGSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCeEEEEec-----hhhh----hhhhHHHHHHHHHHHhccCce--EEEEEeccccchHHHHHHHHHHHHh
Confidence            56888889999998 2222     1111    0111334444433   23333  343332    111    23566679


Q ss_pred             CCCeeeec-----CCCChhHHHHHHHh-cC--CCCcEEeecCCHHHHHHHHHhCCCEEEEe
Q 037779          114 GVDYVDES-----EVLTPADEENHINK-HN--FRVPFVCGCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       114 Gad~v~~~-----~~~~~~~~~~~~~~-~~--~~l~v~~~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                      |||+|-.+     ..-++.+....... .+  .++...=+++|.+++...+++|++-|++.
T Consensus       161 GadFVKTSTG~~~~gat~~~~~~l~~~~~~~~vgIKasGGIrt~~~a~~~i~aGa~rIGtS  221 (234)
T d1n7ka_         161 GADIVKTSTGVYTKGGDPVTVFRLASLAKPLGMGVKASGGIRSGIDAVLAVGAGADIIGTS  221 (234)
T ss_dssp             TCSEEESCCSSSCCCCSHHHHHHHHHHHGGGTCEEEEESSCCSHHHHHHHHHTTCSEEEET
T ss_pred             hhhheeecccccCCCCCHHHHHHHHHHhcCCCCcEEeeCCcCCHHHHHHHHHccCceeecc
Confidence            99999732     12245555544433 22  34455446999999999999999988875

>d1zh2a1 c.23.1.1 (A:2-120) Transcriptional regulatory protein KdpE, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein KdpE, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.71  E-value=1  Score=32.62  Aligned_cols=58  Identities=14%  Similarity=0.182  Sum_probs=42.2

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                      .+++.+.+++....|++++  .+-.+.++..++++.||+.+     |.++-++.+....+...++
T Consensus        59 G~e~~~~ir~~~~~piI~l--t~~~~~~~~~~a~~~Ga~dy-----l~KP~~~~~L~~~i~~~lr  116 (119)
T d1zh2a1          59 GIEFIRDLRQWSAVPVIVL--SARSEESDKIAALDAGADDY-----LSKPFGIGELQARLRVALR  116 (119)
T ss_dssp             HHHHHHHHHTTCCCCEEEE--ESCCSHHHHHHHHHHTCSEE-----EESSCCHHHHHHHHHHHHH
T ss_pred             CchHHHHHHhccCCcEEEE--eccCCHHHHHHHHHcCCCEE-----EECCCCHHHHHHHHHHHHh
Confidence            3678888887777898755  55557899999999999987     4565566666666655554

>d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Chlorobium tepidum [TaxId: 1097]

Probab=91.62  E-value=2.6  Score=35.65  Aligned_cols=53  Identities=26%  Similarity=0.356  Sum_probs=41.3

Q ss_pred             CEEEEccCCCCCHHHHHHHHH-cC-CCEEE-EccccccCCC-HHHHHHHHHHHHHcCC
Q 037779          223 PVVHFAAGGVATPADAAMMMQ-LG-CDGVF-VGSGVFKSGD-PVRRARAIVQAVTNYS  276 (310)
Q Consensus       223 PVv~ia~GGI~t~~di~~~~~-~G-adgV~-VGsai~~~~d-p~~~~~~~~~~~~~~~  276 (310)
                      |++-+.+||+ ++..+..+++ +| .|-++ +|.+++..++ |..=+++++++++++.
T Consensus       206 ~~~Pv~sGG~-~~~~vp~~~~~~G~~Dvil~aGGGi~gHP~G~~aGa~A~rqA~ea~~  262 (283)
T d1ykwa1         206 PCLPVPGGSD-SALTLQTVYEKVGNVDFGFVPGRGVFGHPMGPKAGAKSIRQAWEAIE  262 (283)
T ss_dssp             CCEEEEECSB-CTTTHHHHHHHHCSSCSEECBSSSSSSCTTCHHHHHHHHHHHHHHHH
T ss_pred             CceeeccCCc-chhhhHHHHHhcCCceEEEecCcccccCCCchHHHHHHHHHHHHHHH
Confidence            3333458999 5999999996 69 46665 8999999887 7888899999888643

>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Escherichia coli [TaxId: 562]

Probab=91.47  E-value=0.59  Score=39.28  Aligned_cols=115  Identities=14%  Similarity=0.155  Sum_probs=75.6

Q ss_pred             EEeecCCHHHHHHHHHhCCCEEEEecC--CCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc
Q 037779          142 FVCGCRNLGESLRRIREGAAMIRTKGE--AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL  219 (310)
Q Consensus       142 v~~~v~t~~ea~~a~~~Gad~I~v~g~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~  219 (310)
                      .+..-.++.++.+..+.||..+.|...  .|.|                                    +.+.++.+++.
T Consensus        63 ~i~~~~~p~~~a~~~~~gA~aiSVLTe~~~F~G------------------------------------s~~~l~~v~~~  106 (254)
T d1piia2          63 VIRDDFDPARIAAIYKHYASAISVLTDEKYFQG------------------------------------SFNFLPIVSQI  106 (254)
T ss_dssp             ESCSSCCHHHHHHHHTTTCSEEEEECCSTTTCC------------------------------------CTTHHHHHHHH
T ss_pred             hhcccchhHHHHHHHHhccCceEEecccccCCC------------------------------------CHHHHHHHHhc
Confidence            333445677777777889999988622  2222                                    34455667776


Q ss_pred             CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcC-CCh-------hhHHhhhhccCCc
Q 037779          220 GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY-SDP-------DVLAEVSCGLGEA  291 (310)
Q Consensus       220 ~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~  291 (310)
                      .++||+. =..=| ++-++.+...+|||+|++--+++.    .+.+++|.+.-... .+|       .- .+.+-..|..
T Consensus       107 ~~~PiLr-KDFIi-d~~QI~ear~~GADavLLI~~~L~----~~~l~~l~~~a~~lgl~~LVEvh~~~E-l~~a~~~~a~  179 (254)
T d1piia2         107 APQPILC-KDFII-DPYQIYLARYYQADACLLMLSVLD----DDQYRQLAAVAHSLEMGVLTEVSNEEE-QERAIALGAK  179 (254)
T ss_dssp             CCSCEEE-ESCCC-SHHHHHHHHHTTCSEEEEETTTCC----HHHHHHHHHHHHHTTCEEEEEECSHHH-HHHHHHTTCS
T ss_pred             cccccch-hcccC-cHHHHHHHHhhccchhhhhHhhhc----ccHHHHHHHHHHHHhhhHHHhhccHHH-HHHHHhhccc
Confidence            7889853 34444 799999999999999999988886    24456666554443 232       22 3344456888


Q ss_pred             eecccccc
Q 037779          292 MVGIDLND  299 (310)
Q Consensus       292 ~~~~~~~~  299 (310)
                      +.||.=.|
T Consensus       180 iIGINnRn  187 (254)
T d1piia2         180 VVGINNRD  187 (254)
T ss_dssp             EEEEESEE
T ss_pred             ccCccccc
Confidence            98885433

>d1krwa_ c.23.1.1 (A:) NTRC receiver domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: NTRC receiver domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.38  E-value=0.54  Score=34.51  Aligned_cols=60  Identities=23%  Similarity=0.175  Sum_probs=43.0

Q ss_pred             cHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcC
Q 037779          209 PYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY  275 (310)
Q Consensus       209 ~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~  275 (310)
                      .+++++++++. .++||++  -.|-.+.++..+++++|++.+     +.++-++.+....+.+.++.+
T Consensus        62 G~el~~~l~~~~~~~piI~--~t~~~~~~~~~~a~~~Ga~dy-----l~KP~~~~eL~~~i~~~l~~~  122 (123)
T d1krwa_          62 GLALLKQIKQRHPMLPVII--MTAHSDLDAAVSAYQQGAFDY-----LPKPFDIDEAVALVERAISHY  122 (123)
T ss_dssp             THHHHHHHHHHSSSCCEEE--SCCCSCHHHHHHHHHHTEEEE-----CSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCeEEE--EecCCCHHHHHHHHHcCCCeE-----EeCcCCHHHHHHHHHHHHHcc
Confidence            46777777664 5789964  477778999999999998875     456556666666666666543

>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme A [TaxId: 1358]

Probab=91.29  E-value=0.64  Score=39.65  Aligned_cols=120  Identities=15%  Similarity=0.187  Sum_probs=68.0

Q ss_pred             HHHHHHHHcC-CcEEEecc-cccchhhhcC-CCCCCCChHHHHHHHhhcCcceEeecccc-c-hH---HHHHHHHcCCCe
Q 037779           46 EQARIAEEAG-ACAVMALE-RVPADIRAQG-GVARMSDPQLIKQIKSSVTIPVMAKARIG-H-FV---EAQILEAIGVDY  117 (310)
Q Consensus        46 ~~a~~~~~~G-a~~I~~l~-~~~~d~r~~~-G~~~~~~~~~i~~i~~~~~lPv~~kd~i~-~-~~---~~~~~~~aGad~  117 (310)
                      +.++.+..++ ++.+ .+| .+|....... +.......+.++++++.++.|+++|.... . .+   .++.+.+.|++.
T Consensus       110 ~~~~~~~~~~~ad~i-elNiscPn~~~~~~~~~~~~~~~~~~~~v~~~~~~pv~vKl~p~~~~~~~~~~~~~~~~~~~~~  188 (311)
T d1juba_         110 AMLKKIQESDFSGIT-ELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLTY  188 (311)
T ss_dssp             HHHHHHHHSCCCSEE-EEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCCE
T ss_pred             HHHHHHhhcccccee-eeccccccccccccccccHHHHHHHHHHhhcccccceeecccccchhhHHHHHHHHHHhhccce
Confidence            5677777776 6776 677 5554221000 01001113346777778899999985542 1 11   234445577777


Q ss_pred             eeecCC---------------CC--------------h--hHHHHHHHh-cCCCCcEEe--ecCCHHHHHHHHHhCCCEE
Q 037779          118 VDESEV---------------LT--------------P--ADEENHINK-HNFRVPFVC--GCRNLGESLRRIREGAAMI  163 (310)
Q Consensus       118 v~~~~~---------------~~--------------~--~~~~~~~~~-~~~~l~v~~--~v~t~~ea~~a~~~Gad~I  163 (310)
                      +.....               ..              +  -..+..+.+ ...+++++.  +++|.+++.+.+.+||+.|
T Consensus       189 i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~sg~~l~~~al~~i~~i~~~~~~~~~Iig~GGI~s~~Da~~~i~aGA~~V  268 (311)
T d1juba_         189 VNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATML  268 (311)
T ss_dssp             EEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEE
T ss_pred             EeccccccccccccccccccccccccccCCccccccCchHHHHHHHHHHhcCCCeeEEecCCcCCHHHHHHHHHcCCCce
Confidence            641100               00              0  012233333 345566665  4999999999999999999


Q ss_pred             EEe
Q 037779          164 RTK  166 (310)
Q Consensus       164 ~v~  166 (310)
                      .+.
T Consensus       269 ql~  271 (311)
T d1juba_         269 QIG  271 (311)
T ss_dssp             EEC
T ss_pred             eee
Confidence            885

>d1s2wa_ c.1.12.7 (A:) Phosphoenolpyruvate mutase {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: Phosphoenolpyruvate mutase
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=91.22  E-value=0.99  Score=38.23  Aligned_cols=120  Identities=16%  Similarity=0.138  Sum_probs=77.7

Q ss_pred             CCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHH
Q 037779          138 FRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTK  217 (310)
Q Consensus       138 ~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~  217 (310)
                      .++.++.++++.--++.+.+.|.+.+.+.+......          +  ...+...++.          ..-.+.++.|.
T Consensus        15 ~~~~~~p~~~Da~SAr~~e~aGf~a~~~ss~~~aas----------~--G~pD~~~lt~----------~e~~~~~~~I~   72 (275)
T d1s2wa_          15 KDLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQ----------L--GVRDSNEASW----------TQVVEVLEFMS   72 (275)
T ss_dssp             SSCEEEEEECSHHHHHHHHHHTCSCEEECCHHHHHT----------C-----------C----------HHHHHHHHHHH
T ss_pred             CCCEEeecCcCHHHHHHHHHcCCCEEEhhHHHHHHH----------c--CCCCCCccch----------hhHHHHHHhhh
Confidence            468888899999999999999999998864311000          0  0001111111          11234555666


Q ss_pred             hcCCCCEEEEccCCCCCHHHH----HHHHHcCCCEEEEcccccc------------CCCHHHHHHHHHHHHHcCCChh
Q 037779          218 QLGRLPVVHFAAGGVATPADA----AMMMQLGCDGVFVGSGVFK------------SGDPVRRARAIVQAVTNYSDPD  279 (310)
Q Consensus       218 ~~~~iPVv~ia~GGI~t~~di----~~~~~~GadgV~VGsai~~------------~~dp~~~~~~~~~~~~~~~~~~  279 (310)
                      ...++||++-++.|-+++.++    +++.++|+.|+.+=-..+.            -.+..++...+..+..+..+|+
T Consensus        73 ~~~~lPv~~D~d~GyG~~~~v~~tv~~~~~aGaagi~iEDq~~pk~~~~~~~~~~~~~~~~~~~~ki~aa~~~~~~~~  150 (275)
T d1s2wa_          73 DASDVPILLDADTGYGNFNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPD  150 (275)
T ss_dssp             HTCSSCEEEECCSSCSSHHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTT
T ss_pred             cccCCceeEecccccccchHHHHHHHHHHHhccceeEeeccccccccccccccccccccHHHHHHHHHhhhhhccCcc
Confidence            667899999999999888765    5666789999998664321            1245667777887777766654

>d1dbwa_ c.23.1.1 (A:) Transcriptional regulatory protein FixJ, receiver domain {Rhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein FixJ, receiver domain
species: Rhizobium meliloti [TaxId: 382]

Probab=91.15  E-value=1.8  Score=31.40  Aligned_cols=58  Identities=19%  Similarity=0.145  Sum_probs=43.4

Q ss_pred             cHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779          209 PYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       209 ~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                      .+++++.+++. .++|++++  .|-.+.+...+++++||+.++.     ++-++....+.+.++++
T Consensus        62 G~e~~~~lr~~~~~~~iI~l--t~~~~~~~~~~a~~~Ga~~yl~-----KP~~~~~L~~~i~~a~e  120 (123)
T d1dbwa_          62 GVELLRNLGDLKINIPSIVI--TGHGDVPMAVEAMKAGAVDFIE-----KPFEDTVIIEAIERASE  120 (123)
T ss_dssp             HHHHHHHHHHTTCCCCEEEE--ECTTCHHHHHHHHHTTCSEEEE-----SSCCHHHHHHHHHHHHT
T ss_pred             chHHHHHHHhcCCCCeEEEE--EeeCCHHHHHHHHHCCCCEEEE-----CCCCHHHHHHHHHHHHH
Confidence            46778888764 57899755  5666899999999999998654     66677777676666654

>d1xhfa1 c.23.1.1 (A:2-122) Aerobic respiration control protein ArcA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Aerobic respiration control protein ArcA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.15  E-value=1.4  Score=31.95  Aligned_cols=57  Identities=12%  Similarity=0.187  Sum_probs=41.9

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV  272 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~  272 (310)
                      .+++++.+++..++|++++  .|-++.++..+++++||+.++     .++-++.+....+...+
T Consensus        61 G~~~~~~~r~~~~~pii~l--t~~~~~~~~~~a~~~Ga~dyl-----~KP~~~~~L~~~v~~~l  117 (121)
T d1xhfa1          61 GLLLARELREQANVALMFL--TGRDNEVDKILGLEIGADDYI-----TKPFNPRELTIRARNLL  117 (121)
T ss_dssp             HHHHHHHHHHHCCCEEEEE--ESCCSHHHHHHHHHHTCSEEE-----ESSCCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHhcCCCcEEEE--ECCCCHHHHHHHHHcCCCEEE-----eCCCCHHHHHHHHHHHH
Confidence            3677777777778999755  566789999999999999965     45556766665555544

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

Probab=91.12  E-value=0.7  Score=38.66  Aligned_cols=77  Identities=17%  Similarity=0.311  Sum_probs=47.5

Q ss_pred             eecCCHHHHHHHHHhCCCEEEEecC-CCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCC
Q 037779          144 CGCRNLGESLRRIREGAAMIRTKGE-AGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRL  222 (310)
Q Consensus       144 ~~v~t~~ea~~a~~~Gad~I~v~g~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~i  222 (310)
                      +.+.+++++..|.+.|||=|=+... ..+                                 ++.++..+++.+.+..++
T Consensus         5 vcv~s~~~a~~A~~~GAdRIELc~~l~~G---------------------------------GlTPS~g~i~~~~~~~~i   51 (247)
T d1twda_           5 ICCYSMECALTAQQNGADRVELCAAPKEG---------------------------------GLTPSLGVLKSVRQRVTI   51 (247)
T ss_dssp             EEESSHHHHHHHHHTTCSEEEECBCGGGT---------------------------------CBCCCHHHHHHHHHHCCS
T ss_pred             EEeCCHHHHHHHHHcCCCEEEEcCCcccC---------------------------------CCCCCHHHHHHHHHhcCC
Confidence            4567999999999999997755311 111                                 223456666666665667


Q ss_pred             CEEEEc--cCC--CCCHHH-------HHHHHHcCCCEEEEcc
Q 037779          223 PVVHFA--AGG--VATPAD-------AAMMMQLGCDGVFVGS  253 (310)
Q Consensus       223 PVv~ia--~GG--I~t~~d-------i~~~~~~GadgV~VGs  253 (310)
                      ||.++.  -||  +.|.++       +..+.++|++||++|-
T Consensus        52 Pv~vMIRPR~GdF~Ys~~E~~~M~~di~~~k~~G~dGvV~G~   93 (247)
T d1twda_          52 PVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGFPGLVTGV   93 (247)
T ss_dssp             CEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEECC
T ss_pred             CeEEEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            765432  233  344433       4555667888888774

>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.11  E-value=3  Score=34.93  Aligned_cols=197  Identities=16%  Similarity=0.135  Sum_probs=105.2

Q ss_pred             CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHH---hh-cCcceEeeccc-c------chHHHHHHH
Q 037779           43 VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIK---SS-VTIPVMAKARI-G------HFVEAQILE  111 (310)
Q Consensus        43 ~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~---~~-~~lPv~~kd~i-~------~~~~~~~~~  111 (310)
                      .+++..+.+.++|++.+ =+|       ..+|+. ..+.+.++.+|   +. .+-|+.+...+ +      +.+....+.
T Consensus        32 ~~~e~l~~li~aG~dv~-RlN-------~SHg~~-~~h~~~i~~iR~~~e~~~G~~v~i~~dl~~p~ltekD~~di~~a~  102 (265)
T d1a3xa2          32 NNPETLVALRKAGLNIV-RMN-------FSHGSY-EYHKSVIDNARKSEELYPGRPLAIALDTKGPALSEKDKEDLRFGV  102 (265)
T ss_dssp             CSHHHHHHHHHHTEEEE-EEE-------TTSCCH-HHHHHHHHHHHHHHHHCCCSCCBCEEECCCCSSCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCEE-EEE-------CCCCCH-HHHHHHHHHHHHHhhhccCCceeeeccccchhcccchHHHHHHhh
Confidence            56899999999999976 333       112320 00122333443   33 24555432111 1      223455667


Q ss_pred             HcCCCeeeecCCCChhHH---HHHHHhcCCCCcEEeecCCHHHHHHHH--HhCCCEEEEe-cCCCCCchHHHHHHHHHhh
Q 037779          112 AIGVDYVDESEVLTPADE---ENHINKHNFRVPFVCGCRNLGESLRRI--REGAAMIRTK-GEAGTGNIVEAVRHVRSVM  185 (310)
Q Consensus       112 ~aGad~v~~~~~~~~~~~---~~~~~~~~~~l~v~~~v~t~~ea~~a~--~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~  185 (310)
                      +.|+|+|..+...+..++   .+.+.+++.++.+++.+.+.+-++..-  -.-+|.|.+- |.     +.          
T Consensus       103 ~~~vD~ialSFVrs~~Di~~~r~~l~~~~~~~~IiaKIE~~~al~NldeIi~~sDgimIaRGD-----Lg----------  167 (265)
T d1a3xa2         103 KNGVHMVFASFIRTANDVLTIREVLGEQGKDVKIIVKIENQQGVNNFDEILKVTDGVMVARGD-----LG----------  167 (265)
T ss_dssp             HTTCCEECCTTCCSHHHHHHHHHHHCGGGTTSCCEEEECSHHHHTTHHHHHHHCSEEEEEHHH-----HH----------
T ss_pred             hcccceEeeccCCCHHHHHHHHHHHHHhcCCCeEEeeccchHHHhChHHHHhhcceeEEEccc-----hh----------
Confidence            799999987666555443   333433445677888777655332211  1245677764 21     00          


Q ss_pred             cceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEE---c----cCCCCCHH---HHHHHHHcCCCEEEEcccc
Q 037779          186 GDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHF---A----AGGVATPA---DAAMMMQLGCDGVFVGSGV  255 (310)
Q Consensus       186 ~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~i---a----~GGI~t~~---di~~~~~~GadgV~VGsai  255 (310)
                            ..+..+.+.      ..-.+++....+ ...||++.   .    ...+-|..   |+.-++..|+|+|++..-=
T Consensus       168 ------vei~~e~vp------~~Qk~Ii~~~~~-~gkpvivATq~LeSM~~~~~PTRAEv~Dvanav~dG~D~vmLs~ET  234 (265)
T d1a3xa2         168 ------IEIPAPEVL------AVQKKLIAKSNL-AGKPVICATQMLESMTYNPRPTRAEVSDVGNAILDGADCVMLSGET  234 (265)
T ss_dssp             ------HHSCHHHHH------HHHHHHHHHHHH-HTCCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHTTCSEECCSHHH
T ss_pred             ------hhccHHHHH------HHHHHHHHHHHH-cCCcEEehhhhhhhhccCCCCcHHHHHHHHHHHHhCCCEEEEcccc
Confidence                  000000000      001122233332 35688521   0    12333444   4555567799999999888


Q ss_pred             ccCCCHHHHHHHHHHHHHcCC
Q 037779          256 FKSGDPVRRARAIVQAVTNYS  276 (310)
Q Consensus       256 ~~~~dp~~~~~~~~~~~~~~~  276 (310)
                      ..+.+|.+.++.+.+.+....
T Consensus       235 A~G~~Pv~~V~~~~~I~~~~E  255 (265)
T d1a3xa2         235 AKGNYPINAVTTMAETAVIAE  255 (265)
T ss_dssp             HSCSCHHHHHHHHHHHHHHTT
T ss_pred             ccCCCHHHHHHHHHHHHHHHH
Confidence            888899999999888776554

>d1k66a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpB [TaxId: 1188]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Calothrix sp. pcc 7601, RcpB [TaxId: 1188]

Probab=90.90  E-value=1.2  Score=33.59  Aligned_cols=60  Identities=15%  Similarity=0.225  Sum_probs=42.6

Q ss_pred             cHHHHHHHHhc---CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcC
Q 037779          209 PYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY  275 (310)
Q Consensus       209 ~~~l~~~i~~~---~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~  275 (310)
                      .+++++++++.   .++||+++  .+-.+.++..+++++|+++++     .++-++.+....+...++.|
T Consensus        77 G~el~~~ir~~~~~~~ipiI~l--T~~~~~~~~~~~~~~Ga~~~l-----~KP~~~~~L~~~i~~~l~~~  139 (149)
T d1k66a_          77 GREVLQEIKQDEVLKKIPVVIM--TTSSNPKDIEICYSYSISSYI-----VKPLEIDRLTETVQTFIKYW  139 (149)
T ss_dssp             HHHHHHHHTTSTTGGGSCEEEE--ESCCCHHHHHHHHHTTCSEEE-----ECCSSHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhccccCCCeEEEE--eCCCCHHHHHHHHHCCCCEEE-----ECCCCHHHHHHHHHHHHHHH
Confidence            47788888764   36899765  444579999999999999874     45556666666666666544

>d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Old yellow enzyme (OYE)
species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]

Probab=90.76  E-value=0.078  Score=47.91  Aligned_cols=50  Identities=18%  Similarity=0.060  Sum_probs=37.1

Q ss_pred             HHHhcCCCCEEEEccCCCCCHHHHHHHH-HcCCCEEEEccccccCCCHHHHHH
Q 037779          215 QTKQLGRLPVVHFAAGGVATPADAAMMM-QLGCDGVFVGSGVFKSGDPVRRAR  266 (310)
Q Consensus       215 ~i~~~~~iPVv~ia~GGI~t~~di~~~~-~~GadgV~VGsai~~~~dp~~~~~  266 (310)
                      .+++..++||  |+.|||.+.+++.+.+ +-|||.|.+|++++..++....++
T Consensus       311 ~ik~~~~~PV--i~~G~i~~~~~~~~~i~~~~aDlV~~gR~liaDP~l~~K~~  361 (399)
T d1oyaa_         311 FVYSIWKGPV--IRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRLE  361 (399)
T ss_dssp             HHHHHCCSCE--EEESSCTTCHHHHHHHTTSTTEEEECCHHHHHCTTHHHHHH
T ss_pred             HHHHHhCCCE--EEECCCCChHHHHHHHHcCCCeEhHHHHHHHHCccHHHHHH
Confidence            3555567899  5679997666655555 557999999999999887665543

>d1k68a_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Calothrix sp. pcc 7601, RcpA [TaxId: 1188]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Calothrix sp. pcc 7601, RcpA [TaxId: 1188]

Probab=90.75  E-value=2.3  Score=31.64  Aligned_cols=58  Identities=16%  Similarity=0.135  Sum_probs=40.2

Q ss_pred             cHHHHHHHHhc---CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779          209 PYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       209 ~~~l~~~i~~~---~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                      .+++++.+++.   .++||+++  .+-.+.++..+++++|++++++     ++-++.+..+.+....+
T Consensus        70 G~el~~~ir~~~~~~~iPvI~l--s~~~~~~~~~~a~~~Ga~~yl~-----KP~~~~~L~~~i~~i~~  130 (140)
T d1k68a_          70 GREVLAEIKSDPTLKRIPVVVL--STSINEDDIFHSYDLHVNCYIT-----KSANLSQLFQIVKGIEE  130 (140)
T ss_dssp             HHHHHHHHHHSTTGGGSCEEEE--ESCCCHHHHHHHHHTTCSEEEE-----CCSSHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhCcccCCCcEEEE--eCCCCHHHHHHHHHCCCCEEEE-----CCCCHHHHHHHHHHHHH
Confidence            46777887764   36899755  4555799999999999998754     55566655555544433

>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Pentaerythritol tetranirate reductase
species: Enterobacter cloacae [TaxId: 550]

Probab=90.63  E-value=1.1  Score=39.42  Aligned_cols=118  Identities=16%  Similarity=0.118  Sum_probs=69.1

Q ss_pred             HHHHHHHHcCCcEEEecc---------------cccchhhhcCCCC--CCC-ChHHHHHHHhhcC-cceEee--------
Q 037779           46 EQARIAEEAGACAVMALE---------------RVPADIRAQGGVA--RMS-DPQLIKQIKSSVT-IPVMAK--------   98 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~---------------~~~~d~r~~~G~~--~~~-~~~~i~~i~~~~~-lPv~~k--------   98 (310)
                      +.|+.+.++|+|+| .++               +..+|  .++|+.  +.+ ..+.+++||+.+. -+|.++        
T Consensus       164 ~AA~rA~~aGfDgV-EIH~ahGYLl~qFlSp~~N~RtD--eYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~~  240 (363)
T d1vyra_         164 QAVANAREAGFDLV-ELHSAHGYLLHQFLSPSSNQRTD--QYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQ  240 (363)
T ss_dssp             HHHHHHHHTTCSEE-EEEECTTSHHHHHHCTTTCCCCS--TTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBT
T ss_pred             HHHHHHHHhcccee-eecccCceeeeeeecCccccccc--ccccchhhhhHhHHHHHhhhhhhcCCCCcceeeccccccc
Confidence            55999999999998 332               22333  356661  111 1344667777763 233332        


Q ss_pred             ccc--c-ch----HHHHHHHHcCCCeeeecCC------CChhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhC-CCEEE
Q 037779           99 ARI--G-HF----VEAQILEAIGVDYVDESEV------LTPADEENHINKHNFRVPFVCGCRNLGESLRRIREG-AAMIR  164 (310)
Q Consensus        99 d~i--~-~~----~~~~~~~~aGad~v~~~~~------~~~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~G-ad~I~  164 (310)
                      +..  + ..    ..++.+.+.|+|+++.+..      .....+.+.++.......+.++..|++.++++++.| +|+|+
T Consensus       241 ~~~~gg~~~~e~~~~~~~l~~~gvd~i~vs~~~~~~~~~~~~~~~~~~~~~~~~~vi~~G~~t~~~ae~~l~~G~~DlV~  320 (363)
T d1vyra_         241 NVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIGAGAYTAEKAEDLIGKGLIDAVA  320 (363)
T ss_dssp             TBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEESSCCHHHHHHHHHTTSCSEEE
T ss_pred             chhhcccchHHHHHHHHHHHhcCCeeeecccCCccCCccccHHHHHHHHHhcCceEEecCCCCHHHHHHHHHCCCcceeh
Confidence            111  1 11    2345667799999984311      112244455554333344555688999999999988 69999


Q ss_pred             Ee
Q 037779          165 TK  166 (310)
Q Consensus       165 v~  166 (310)
                      +.
T Consensus       321 ~g  322 (363)
T d1vyra_         321 FG  322 (363)
T ss_dssp             ES
T ss_pred             hh
Confidence            85

>d1i3ca_ c.23.1.1 (A:) Response regulator for cyanobacterial phytochrome {Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator for cyanobacterial phytochrome
species: Synechocystis sp. PCC 6803, RCP1 [TaxId: 1148]

Probab=90.61  E-value=1.3  Score=33.31  Aligned_cols=54  Identities=19%  Similarity=0.194  Sum_probs=37.3

Q ss_pred             cHHHHHHHHhc---CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 037779          209 PYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV  269 (310)
Q Consensus       209 ~~~l~~~i~~~---~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~  269 (310)
                      .+++++++++.   .++||+++  .+-.+.++..+++++||+++++     +.-++.+..+.+.
T Consensus        71 G~el~~~ir~~~~~~~iPvi~l--T~~~~~~~~~~a~~~Ga~~yl~-----KP~~~~~L~~~i~  127 (144)
T d1i3ca_          71 GREVLAEIKQNPDLKRIPVVVL--TTSHNEDDVIASYELHVNCYLT-----KSRNLKDLFKMVQ  127 (144)
T ss_dssp             HHHHHHHHHHCTTTTTSCEEEE--ESCCCHHHHHHHHHTTCSEEEE-----CCSSHHHHHHHHH
T ss_pred             chHHHHHHHhCcccCCCeEEEE--ECCCCHHHHHHHHHCCCCEEEE-----CCCCHHHHHHHHH
Confidence            46778888764   36899755  4446799999999999998875     3334444444443

>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=90.27  E-value=4.6  Score=34.04  Aligned_cols=196  Identities=15%  Similarity=0.138  Sum_probs=105.9

Q ss_pred             CCHHHHHHHHHcCCcEEEecccccchhhhcCCCC--CCCChHHHHHHHhhcC------cceEee-cccc------chHHH
Q 037779           43 VTPEQARIAEEAGACAVMALERVPADIRAQGGVA--RMSDPQLIKQIKSSVT------IPVMAK-ARIG------HFVEA  107 (310)
Q Consensus        43 ~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~--~~~~~~~i~~i~~~~~------lPv~~k-d~i~------~~~~~  107 (310)
                      .+++..+.+.++|++.+ =+|       ..+|+.  .....+.++++.+...      .|+.+. |..+      +.+..
T Consensus        44 ~~~e~l~~Li~aGvnv~-RiN-------~SHg~~e~h~~~i~~iR~~~~~~~~~~il~~~~~I~~d~~~~~l~~~di~di  115 (282)
T d2g50a2          44 RSVETLKEMIKSGMNVA-RMN-------FSHGTHEYHAETIKNVRTATESFASDPILYRPVAVALDTKGPAVSEKDIQDL  115 (282)
T ss_dssp             CSHHHHHHHHHHTCCEE-EEE-------TTSSCHHHHHHHHHHHHHHHHTTTTCTTTCCCCEEEEECCCCSSCHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCEE-EEe-------CCCCCHHHHHHHHHHHHHHHHHhCCCceeccccccccccccccccchHHHHH
Confidence            56899999999999986 333       112220  0000223334433321      133221 1111      23455


Q ss_pred             HHHHHcCCCeeeecCCCChhHH---HHHHHhcCCCCcEEeecCCHHHHHHHH--HhCCCEEEEe-cCCCCCchHHHHHHH
Q 037779          108 QILEAIGVDYVDESEVLTPADE---ENHINKHNFRVPFVCGCRNLGESLRRI--REGAAMIRTK-GEAGTGNIVEAVRHV  181 (310)
Q Consensus       108 ~~~~~aGad~v~~~~~~~~~~~---~~~~~~~~~~l~v~~~v~t~~ea~~a~--~~Gad~I~v~-g~~~~~~~~~~~~~~  181 (310)
                      ....+.|+|++..+...+..++   .+.+.+++.+..+++-+.+.+-+...-  -.-+|.|.+- |.     +.      
T Consensus       116 ~~a~~~~vD~ialSFVrs~~DI~~~r~~l~~~g~~~~IiaKIE~~~al~NldeIi~~sDgIMIaRGD-----Lg------  184 (282)
T d2g50a2         116 KFGVEQDVDMVFASFIRKAADVHEVRKILGEKGKNIKIISKIENHEGVRRFDEILEASDGIMVARGD-----LG------  184 (282)
T ss_dssp             HHHHHTTCSEEEETTCCSHHHHHHHHHHHTTTTTTSEEEEEECSHHHHHTHHHHHHHSSEEEEEHHH-----HH------
T ss_pred             HHhhhccccceeecccCCHHHHHHHHHHHHHcCCCceEEEeecchhhhhcchhhccccceeeeeccc-----cc------
Confidence            6677799999987766555543   344444556688888776655332111  1235777764 21     00      


Q ss_pred             HHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEE-------ccCCCCCHHH---HHHHHHcCCCEEEE
Q 037779          182 RSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHF-------AAGGVATPAD---AAMMMQLGCDGVFV  251 (310)
Q Consensus       182 ~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~i-------a~GGI~t~~d---i~~~~~~GadgV~V  251 (310)
                                ..++.+.+      ...-..+++.... ...||++.       ...-.-|..+   +.-++..|+|+|++
T Consensus       185 ----------~ei~~e~v------p~~Qk~Ii~~~~~-~~kpvivAt~~leSMi~~~~pTRaEv~Dianav~~G~D~imL  247 (282)
T d2g50a2         185 ----------IEIPAEKV------FLAQKMIIGRCNR-AGKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIML  247 (282)
T ss_dssp             ----------HHSCGGGH------HHHHHHHHHHHHH-HTCCEEEESSTTGGGGTCSSCCHHHHHHHHHHHHHTCSEEEE
T ss_pred             ----------cccCHHHh------HHHHHHHHHHHHh-cCCcEEEecccccccccCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence                      00010000      0001223333332 35688531       2455556655   45566789999999


Q ss_pred             ccccccCCCHHHHHHHHHHHHHc
Q 037779          252 GSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       252 Gsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      ..-=....+|.+.++.+.+.+..
T Consensus       248 s~ETa~G~~p~~~V~~l~~i~~~  270 (282)
T d2g50a2         248 SGETAKGDYPLEAVRMQHLIARE  270 (282)
T ss_dssp             SHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             CcccccCCCHHHHHHHHHHHHHH
Confidence            98888889999988887776654

>d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Cell division response regulator DivK
species: Caulobacter crescentus [TaxId: 155892]

Probab=90.14  E-value=2.2  Score=30.84  Aligned_cols=58  Identities=19%  Similarity=0.240  Sum_probs=37.7

Q ss_pred             cHHHHHHHHhc---CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779          209 PYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       209 ~~~l~~~i~~~---~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                      .+++++.+++.   .++|++++  .+..+.++..+++++|++++     +.++-++....+.+...++
T Consensus        60 G~el~~~ir~~~~~~~iPii~l--t~~~~~~~~~~~~~~G~~~~-----l~KP~~~~~L~~~i~~~l~  120 (123)
T d1mb3a_          60 GLEVTKWLKEDDDLAHIPVVAV--TAFAMKGDEERIREGGCEAY-----ISKPISVVHFLETIKRLLE  120 (123)
T ss_dssp             HHHHHHHHHHSTTTTTSCEEEE--C------CHHHHHHHTCSEE-----ECSSCCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCCCcCCCCeEEE--EEecCHHHHHHHHHcCCCEE-----EECCCCHHHHHHHHHHHHh
Confidence            46777888764   46898755  55567888899999999996     5566667766666666654

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=90.07  E-value=0.53  Score=37.06  Aligned_cols=55  Identities=16%  Similarity=0.204  Sum_probs=32.7

Q ss_pred             HHHHHHHhc--CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779          211 DLVMQTKQL--GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       211 ~l~~~i~~~--~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                      ++.+.+++.  .++||+   .||+--.+|...+.++|++.|-     -....+.+.+..+.+.++
T Consensus       107 ~l~~~L~~~g~~~v~Vi---vGG~ip~~d~~~l~~~Gv~~iF-----~pgt~~~e~a~~~~~~~~  163 (168)
T d7reqa2         107 ALRKELDKLGRPDILIT---VGGVIPEQDFDELRKDGAVEIY-----TPGTVIPESAISLVKKLR  163 (168)
T ss_dssp             HHHHHHHHTTCTTSEEE---EEESCCGGGHHHHHHHTEEEEE-----CTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCeEEE---EeCCCCHHHHHHHHhCCCCEEE-----CcCCCHHHHHHHHHHHHH
Confidence            445555554  356664   3776568899999999998752     112234455555555444

>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Membrane-associated (S)-mandelate dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.04  E-value=0.71  Score=40.08  Aligned_cols=86  Identities=14%  Similarity=0.113  Sum_probs=62.0

Q ss_pred             ChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeec--------CCCChhHHHHHHHhcCCCCcEEee--cCCH
Q 037779           80 DPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDES--------EVLTPADEENHINKHNFRVPFVCG--CRNL  149 (310)
Q Consensus        80 ~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~--------~~~~~~~~~~~~~~~~~~l~v~~~--v~t~  149 (310)
                      ..+.++.+++....|+++++..+. ..+..+...|++.+..+        ...+..+....+.. ..+++++++  +++.
T Consensus       210 ~~~~i~~l~~~~~~~i~~kgv~~~-~~~~~a~~~g~~~~~~s~~gg~~~~~~~~~~~~l~~i~~-~~~~~viasGGIR~G  287 (353)
T d1p4ca_         210 NWEALRWLRDLWPHKLLVKGLLSA-EDADRCIAEGADGVILSNHGGRQLDCAISPMEVLAQSVA-KTGKPVLIDSGFRRG  287 (353)
T ss_dssp             CHHHHHHHHHHCCSEEEEEEECCH-HHHHHHHHTTCSEEEECCGGGTSCTTCCCGGGTHHHHHH-HHCSCEEECSSCCSH
T ss_pred             CHHHHHHHHhccccchhhhcchhh-hhHHHHHhcCCchhhhcccccccccccccchhcccchhc-ccccceeecCCcCch
Confidence            467788889999999999877653 57778888999997632        11223333333322 134677775  9999


Q ss_pred             HHHHHHHHhCCCEEEEec
Q 037779          150 GESLRRIREGAAMIRTKG  167 (310)
Q Consensus       150 ~ea~~a~~~Gad~I~v~g  167 (310)
                      -|+.+++.+|||++++..
T Consensus       288 ~Dv~KALaLGAd~vgigr  305 (353)
T d1p4ca_         288 SDIVKALALGAEAVLLGR  305 (353)
T ss_dssp             HHHHHHHHTTCSCEEESH
T ss_pred             HHHHHHHHcCCCEEEEcH
Confidence            999999999999999864

>d1s8na_ c.23.1.1 (A:) Probable two-component system transcriptional regulator Rv1626 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Probable two-component system transcriptional regulator Rv1626
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.89  E-value=0.56  Score=37.03  Aligned_cols=94  Identities=12%  Similarity=-0.007  Sum_probs=62.0

Q ss_pred             CCCcEEeecCCHHHHHHHH-HhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHH
Q 037779          138 FRVPFVCGCRNLGESLRRI-REGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQT  216 (310)
Q Consensus       138 ~~l~v~~~v~t~~ea~~a~-~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i  216 (310)
                      .|..++..+.|.+|+.... +..+|+|-..-                      .+|.             ....++++.+
T Consensus        26 ~g~~vv~~a~~g~eal~~~~~~~pDlvllDi----------------------~mP~-------------~dG~e~~~~i   70 (190)
T d1s8na_          26 EGYEIVGEAGDGQEAVELAELHKPDLVIMDV----------------------KMPR-------------RDGIDAASEI   70 (190)
T ss_dssp             TTCEEEEEESSHHHHHHHHHHHCCSEEEEES----------------------SCSS-------------SCHHHHHHHH
T ss_pred             CCCEEEEEECCHHHHHHHHhcCCCCEEEEec----------------------cccC-------------cchHHHHHHH
Confidence            3455555678888877655 45778776641                      1121             1246778888


Q ss_pred             HhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779          217 KQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       217 ~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                      ++..++||+++  .+-.+.+.+.+++++||++++.=     +-++......+...+.
T Consensus        71 r~~~~~pIi~l--Ta~~~~~~~~~al~~Ga~~yl~K-----P~~~~~L~~~i~~~~~  120 (190)
T d1s8na_          71 ASKRIAPIVVL--TAFSQRDLVERARDAGAMAYLVK-----PFSISDLIPAIELAVS  120 (190)
T ss_dssp             HHTTCSCEEEE--EEGGGHHHHHTTGGGSCEEEEEE-----SCCHHHHHHHHHHHHH
T ss_pred             HhcCCCCEEEE--eCCCCHHHHHHHHHcCCCEeccC-----CCCHHHHHHHHHHHHH
Confidence            77777899755  45557899999999999998764     4566655555554443

>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Flavocytochrome b2, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.77  E-value=0.9  Score=40.67  Aligned_cols=88  Identities=17%  Similarity=0.161  Sum_probs=63.5

Q ss_pred             ChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeecC-------C-CCh----hHHHHHHHh--cCCCCcEEee
Q 037779           80 DPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESE-------V-LTP----ADEENHINK--HNFRVPFVCG  145 (310)
Q Consensus        80 ~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~-------~-~~~----~~~~~~~~~--~~~~l~v~~~  145 (310)
                      +.+.++.++...+.|+++|.... .+.+..+..+|++.+..+.       . ...    +++...+..  .+.+++++++
T Consensus       234 ~~~~i~~i~~~~~~~~i~kgi~~-~~da~~~~~~G~~~i~vsnhggr~~d~~~~~~~~l~~i~~~~~~~~v~~~~~viad  312 (414)
T d1kbia1         234 TWKDIEELKKKTKLPIVIKGVQR-TEDVIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVD  312 (414)
T ss_dssp             CHHHHHHHHHHCSSCEEEEEECS-HHHHHHHHHTTCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEE
T ss_pred             CHHHHHHHhccCCceEEeeccch-hHHHHHHHhcCCcceeeccccccccccccccccchhhhhhhhhhhccCCceeEEec
Confidence            35789999999999999986543 4677888899999987321       1 111    133333332  2345888885


Q ss_pred             --cCCHHHHHHHHHhCCCEEEEecC
Q 037779          146 --CRNLGESLRRIREGAAMIRTKGE  168 (310)
Q Consensus       146 --v~t~~ea~~a~~~Gad~I~v~g~  168 (310)
                        +++.-|+.+++.+|||++++.++
T Consensus       313 GGIR~G~DVaKALALGAdaVgigrp  337 (414)
T d1kbia1         313 GGVRRGTDVLKALCLGAKGVGLGRP  337 (414)
T ss_dssp             SSCCSHHHHHHHHHHTCSEEEECHH
T ss_pred             CCcCcHHHHHHHHHcCCCEEEEcHH
Confidence              99999999999999999998644

>d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I DAHP synthetase
domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG)
species: Thermotoga maritima [TaxId: 2336]

Probab=89.74  E-value=3.3  Score=35.94  Aligned_cols=172  Identities=13%  Similarity=0.120  Sum_probs=95.3

Q ss_pred             HHHHHHHHcCCcEEEecccc-cchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeeeecC-C
Q 037779           46 EQARIAEEAGACAVMALERV-PADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVDESE-V  123 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~-~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~~~~-~  123 (310)
                      ++|+.+.+.|++.+...-+. .|.+..|.|.. ...++.++++++.+++|++--..  +..+++.+.+. +|.+-+++ .
T Consensus       112 ~~A~~lke~g~~~~r~g~fKpRtsp~sf~g~g-~~gL~~l~~~k~~~glpvvTdV~--~~~~~~~~~e~-~DilQI~A~~  187 (338)
T d1vr6a1         112 ETAHFLSELGVKVLRGGAYKPRTSPYSFQGLG-EKGLEYLREAADKYGMYVVTEAL--GEDDLPKVAEY-ADIIQIGARN  187 (338)
T ss_dssp             HHHHHHHHTTCCEEECBSCCCCCSTTSCCCCT-HHHHHHHHHHHHHHTCEEEEECS--SGGGHHHHHHH-CSEEEECGGG
T ss_pred             HHHHHHHHhCccccccceecccccccccccch-HHHHHHHHHHHhhcCceeEEecc--chhhhhhhhce-eeeEEechhh
Confidence            67999999999876222111 13344454442 23356788999999999976422  22455555555 78876553 2


Q ss_pred             CChhHHHHHHHhcCCCCcEEee---cCCHHHHHHHH----HhCCC-EEEEe-cCC-CCCchHHHHHHHHHhhcceecccc
Q 037779          124 LTPADEENHINKHNFRVPFVCG---CRNLGESLRRI----REGAA-MIRTK-GEA-GTGNIVEAVRHVRSVMGDIRVLRN  193 (310)
Q Consensus       124 ~~~~~~~~~~~~~~~~l~v~~~---v~t~~ea~~a~----~~Gad-~I~v~-g~~-~~~~~~~~~~~~~~~~~~~~~l~~  193 (310)
                      ....++++.+.+  .+.++.+.   ..+++|...+.    ..|.. ++-.. |.. +.+                    +
T Consensus       188 ~~n~~LL~~~g~--t~kpV~lKkG~~~s~~e~l~aae~i~~~Gn~~vilcERG~~t~~~--------------------~  245 (338)
T d1vr6a1         188 AQNFRLLSKAGS--YNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEK--------------------A  245 (338)
T ss_dssp             TTCHHHHHHHHT--TCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCC--------------------S
T ss_pred             ccCHHHHHHhhc--cCCcEEecCccccchhhhhhhHHHHHhcCCccceeeecccccccc--------------------c
Confidence            345566666655  34566553   45777755443    45664 33332 211 100                    0


Q ss_pred             cCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEc--cCCCCCH--HHHHHHHHcCCCEEEEcc
Q 037779          194 MDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFA--AGGVATP--ADAAMMMQLGCDGVFVGS  253 (310)
Q Consensus       194 ~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia--~GGI~t~--~di~~~~~~GadgV~VGs  253 (310)
                       .         ....+...+..+++....||+.-+  +||-...  .-++.++++|+||+++=+
T Consensus       246 -~---------~~~lD~~~i~~~k~~~~lPVi~DpsHs~G~r~~v~~larAAvA~GadGl~iE~  299 (338)
T d1vr6a1         246 -T---------RNTLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEV  299 (338)
T ss_dssp             -S---------SSBCCTTHHHHHHHHBSSCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEB
T ss_pred             -c---------ccchhhcccceeeccccCceeeCCCCCCCchhHHHHHHHHHHHhCCCEEEEEe
Confidence             0         011133445566666678995322  2442211  123456678999999976

>d1peya_ c.23.1.1 (A:) Sporulation response regulator Spo0F {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0F
species: Bacillus subtilis [TaxId: 1423]

Probab=89.71  E-value=2  Score=31.02  Aligned_cols=54  Identities=15%  Similarity=0.079  Sum_probs=37.8

Q ss_pred             cHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHH
Q 037779          209 PYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIV  269 (310)
Q Consensus       209 ~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~  269 (310)
                      .+++++.+++. .++||+++  .|-.+.+...+++++|+++++     .++-++.+....+.
T Consensus        60 G~el~~~lr~~~~~~pvi~l--t~~~~~~~~~~a~~~Ga~~yl-----~KP~~~~~L~~~v~  114 (119)
T d1peya_          60 GIEILKRMKVIDENIRVIIM--TAYGELDMIQESKELGALTHF-----AKPFDIDEIRDAVK  114 (119)
T ss_dssp             HHHHHHHHHHHCTTCEEEEE--ESSCCHHHHHHHHHTTCCEEE-----ESSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCcEEEE--ecCCCHHHHHHHHHCCCCEEE-----ECCCCHHHHHHHHH
Confidence            46777777664 47898755  566689999999999999975     46556554444443

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Salmonella typhi [TaxId: 90370]

Probab=89.58  E-value=1.2  Score=37.14  Aligned_cols=112  Identities=19%  Similarity=0.169  Sum_probs=58.8

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHH----HHHHHhhc-CcceEeeccc--------cc----hHHHH
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQL----IKQIKSSV-TIPVMAKARI--------GH----FVEAQ  108 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~----i~~i~~~~-~lPv~~kd~i--------~~----~~~~~  108 (310)
                      +.++.+.+.|+|.+ -++   .|  .+..   ..+.+.    ++.+++.. ++|++.-.+-        ++    .+.++
T Consensus        32 ~~~~~~~~~~aD~v-E~R---lD--~l~~---~~~~~~l~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~  102 (252)
T d1gqna_          32 AEALAYREATFDIL-EWR---VD--HFMD---IASTQSVLTAARVIRDAMPDIPLLFTFRSAKEGGEQTITTQHYLTLNR  102 (252)
T ss_dssp             HHHHHHTTSCCSEE-EEE---GG--GCSC---TTCHHHHHHHHHHHHHHCTTSCEEEECCBGGGTCSBCCCHHHHHHHHH
T ss_pred             HHHHHHhhcCCCEE-EEE---Ec--cccc---cCCHHHHHHHHHHHHHhcCCCCEEEEEechhhCCCCCCCHHHHHHHHH
Confidence            45677777899987 332   11  2221   112333    44555554 6999873222        11    12334


Q ss_pred             HHHHcC-CCeeeecCCCChhHHHHHHHh-cCCCCcEEeecCCH------HHH----HHHHHhCCCEEEEe
Q 037779          109 ILEAIG-VDYVDESEVLTPADEENHINK-HNFRVPFVCGCRNL------GES----LRRIREGAAMIRTK  166 (310)
Q Consensus       109 ~~~~aG-ad~v~~~~~~~~~~~~~~~~~-~~~~l~v~~~v~t~------~ea----~~a~~~Gad~I~v~  166 (310)
                      .+.+.| +|++.+........+.+.+.. +..+..++++.|++      ++.    .+..+.|||++++-
T Consensus       103 ~~~~~~~~d~iDiEl~~~~~~~~~li~~a~~~~~~vI~S~Hdf~~TP~~~~l~~~~~~m~~~gaDivKia  172 (252)
T d1gqna_         103 AAIDSGLVDMIDLELFTGDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLRKMQALGADIPKIA  172 (252)
T ss_dssp             HHHHHSCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             HHHHcCCCceEeccccccHHHHHHHHHHhhcCCCeEEEEecCCCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            455578 799874322222333333332 33567777777742      233    34456799998874

>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Bacillus anthracis [TaxId: 1392]

Probab=89.41  E-value=5  Score=33.28  Aligned_cols=83  Identities=16%  Similarity=0.216  Sum_probs=47.4

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChH---HHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQ---LIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~---~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGad  116 (310)
                      +.++.+.+.|++++... ....|.      ..++..+   .++.+.+.+  ++|+++...-..    .+.++.+.++|||
T Consensus        28 ~~i~~l~~~Gv~gl~~~-G~tGE~------~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~Gad  100 (292)
T d1xkya1          28 KLVNYLIDNGTTAIVVG-GTTGES------PTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVGVD  100 (292)
T ss_dssp             HHHHHHHHTTCCEEEES-STTTTG------GGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHCCCCEEEEC-eEccch------hhCCHHHHHHHHHHHHHHhCCCceEEEecCcccHHHHHHHHHHHHHcCCC
Confidence            67999999999998432 000011      1122222   344444443  589988754332    2566778889999


Q ss_pred             eeee-cCC---CChhHHHHHHHh
Q 037779          117 YVDE-SEV---LTPADEENHINK  135 (310)
Q Consensus       117 ~v~~-~~~---~~~~~~~~~~~~  135 (310)
                      .+.. +..   .+..++.+.+++
T Consensus       101 ~ilv~pP~~~~~s~~~i~~~~~~  123 (292)
T d1xkya1         101 AVMLVAPYYNKPSQEGMYQHFKA  123 (292)
T ss_dssp             EEEEECCCSSCCCHHHHHHHHHH
T ss_pred             EEEECCCCCCCCCHHHHHHHHHH
Confidence            9883 221   234456555543

>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54 (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional activator sigm54 (NtrC1), N-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.16  E-value=2.5  Score=31.26  Aligned_cols=87  Identities=14%  Similarity=0.097  Sum_probs=57.5

Q ss_pred             ecCCHHHHHHHHH-hCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc-CCC
Q 037779          145 GCRNLGESLRRIR-EGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL-GRL  222 (310)
Q Consensus       145 ~v~t~~ea~~a~~-~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~-~~i  222 (310)
                      .+.|.+++...+. ..+|+|.+.-.                      ++.             ....++++.+++. .++
T Consensus        29 ~a~~~~eAl~~l~~~~~dlvilD~~----------------------mp~-------------~~G~e~~~~lr~~~~~~   73 (137)
T d1ny5a1          29 SAERGKEAYKLLSEKHFNVVLLDLL----------------------LPD-------------VNGLEILKWIKERSPET   73 (137)
T ss_dssp             EESSHHHHHHHHHHSCCSEEEEESB----------------------CSS-------------SBHHHHHHHHHHHCTTS
T ss_pred             EECCHHHHHHHhhccccccchHHHh----------------------hhh-------------hhHHHHHHHHHHhCCCC
Confidence            4678888887764 45677766411                      111             1236677777664 578


Q ss_pred             CEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779          223 PVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       223 PVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                      ||+++  .|-.+.+.+.+++++||+.++.     ++-++......+..+++
T Consensus        74 piI~l--T~~~~~~~~~~a~~~Ga~dyl~-----KP~~~~~L~~~i~~~l~  117 (137)
T d1ny5a1          74 EVIVI--TGHGTIKTAVEAMKMGAYDFLT-----KPCMLEEIELTINKAIE  117 (137)
T ss_dssp             EEEEE--EETTCHHHHHHHHTTTCCEEEE-----ESCCHHHHHHHHHHHHH
T ss_pred             CEEEE--ECCCCHHHHHHHHHcCCCEEEe-----CCCCHHHHHHHHHHHHH
Confidence            98754  5556899999999999999866     55566655555555544

>d1qkka_ c.23.1.1 (A:) Transcriptional regulatory protein DctD, receiver domain {Sinorhizobium meliloti [TaxId: 382]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein DctD, receiver domain
species: Sinorhizobium meliloti [TaxId: 382]

Probab=88.99  E-value=1.6  Score=32.64  Aligned_cols=59  Identities=19%  Similarity=0.130  Sum_probs=42.3

Q ss_pred             cHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          209 PYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       209 ~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      ..++++.+++. .++||+++  .|-++.+.+.+++++||+.++.     ++-++......+...++.
T Consensus        59 G~el~~~lr~~~~~~pvI~l--T~~~~~~~~~~a~~~Ga~dyl~-----KP~~~~~L~~~i~~~~~~  118 (140)
T d1qkka_          59 GLALFRKILALDPDLPMILV--TGHGDIPMAVQAIQDGAYDFIA-----KPFAADRLVQSARRAEEK  118 (140)
T ss_dssp             HHHHHHHHHHHCTTSCEEEE--ECGGGHHHHHHHHHTTCCEEEE-----SSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCcEEEE--ECCCCHHHHHHHHHcCCCEeec-----CCCCHHHHHHHHHHHHHH
Confidence            46777777764 57999765  6666889999999999998876     555666655555555543

>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=88.86  E-value=1.2  Score=37.69  Aligned_cols=77  Identities=21%  Similarity=0.314  Sum_probs=52.4

Q ss_pred             CHHHHHHHHHcCCcEEEecccccc---hhhhc-----------CCCC-CCCChHHHHHHHhhcCcceEeeccccchHHHH
Q 037779           44 TPEQARIAEEAGACAVMALERVPA---DIRAQ-----------GGVA-RMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQ  108 (310)
Q Consensus        44 ~~~~a~~~~~~Ga~~I~~l~~~~~---d~r~~-----------~G~~-~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~  108 (310)
                      ..++++.+.++|++++...|....   +....           +|.. .....+.++++++.+++||+....+.+.+++.
T Consensus       178 ~~~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i~~~~~ipIig~GGI~s~~Da~  257 (311)
T d1ep3a_         178 IVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDVDIPIIGMGGVANAQDVL  257 (311)
T ss_dssp             SHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTCSSCEEECSSCCSHHHHH
T ss_pred             hHHHHHHHHHhhhheeEEEeeccccccccccccccccccCCCCCCCcccchhHHHHHHHhhhcceeEEEeCCcCCHHHHH
Confidence            368899999999999866651111   11000           0110 11125678888988999999999998777776


Q ss_pred             HHHHcCCCeeee
Q 037779          109 ILEAIGVDYVDE  120 (310)
Q Consensus       109 ~~~~aGad~v~~  120 (310)
                      ....+|||.|-+
T Consensus       258 ~~i~~GAd~V~i  269 (311)
T d1ep3a_         258 EMYMAGASAVAV  269 (311)
T ss_dssp             HHHHHTCSEEEE
T ss_pred             HHHHcCCCEEEe
Confidence            666899999973

>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sporulation response regulator Spo0A
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.65  E-value=2.7  Score=30.39  Aligned_cols=76  Identities=7%  Similarity=0.116  Sum_probs=48.4

Q ss_pred             CCcEEeecCCHHHHHHHH-HhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHH
Q 037779          139 RVPFVCGCRNLGESLRRI-REGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTK  217 (310)
Q Consensus       139 ~l~v~~~v~t~~ea~~a~-~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~  217 (310)
                      +..++..+.+.+++.... +..+|++.+--                      .+|.+             ..+++++.++
T Consensus        26 ~~~~v~~a~~g~~al~~~~~~~~dlillD~----------------------~mP~~-------------dG~e~~~~ir   70 (123)
T d1dz3a_          26 DMEVIGTAYNGQDCLQMLEEKRPDILLLDI----------------------IMPHL-------------DGLAVLERIR   70 (123)
T ss_dssp             TEEEEEEESSHHHHHHHHHHHCCSEEEEES----------------------CCSSS-------------CHHHHHHHHH
T ss_pred             CcEEEEEECCHHHHHHHHHhcCCCEEEEcC----------------------CCCCC-------------CHHHHHHHHH
Confidence            345555677888877665 45678776541                      12221             2467777777


Q ss_pred             hc-CCC-CEEEEccCCCCCHHHHHHHHHcCCCEEEE
Q 037779          218 QL-GRL-PVVHFAAGGVATPADAAMMMQLGCDGVFV  251 (310)
Q Consensus       218 ~~-~~i-PVv~ia~GGI~t~~di~~~~~~GadgV~V  251 (310)
                      +. ... ||+++  .+-.+.+...+++++||++++.
T Consensus        71 ~~~~~~~~ii~~--t~~~~~~~~~~a~~~Ga~~~l~  104 (123)
T d1dz3a_          71 AGFEHQPNVIML--TAFGQEDVTKKAVELGASYFIL  104 (123)
T ss_dssp             HHCSSCCEEEEE--EETTCHHHHHHHHHTTCEEEEE
T ss_pred             hcCCCCCeEEEE--ECcCCHHHHHHHHHCCCCEEEE
Confidence            63 233 46544  4445788999999999999864

>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Bacillus anthracis [TaxId: 1392]

Probab=88.34  E-value=1.6  Score=36.51  Aligned_cols=101  Identities=18%  Similarity=0.238  Sum_probs=57.7

Q ss_pred             HHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhc--CCCCEEEEc
Q 037779          151 ESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQL--GRLPVVHFA  228 (310)
Q Consensus       151 ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~--~~iPVv~ia  228 (310)
                      .++..++.|++-+.++|..+-.                   ..++.++          -.++++.+.+.  .++||++ .
T Consensus        29 ~i~~l~~~Gv~gl~~~G~tGE~-------------------~~Ls~~E----------r~~l~~~~~~~~~~~~~vi~-g   78 (292)
T d1xkya1          29 LVNYLIDNGTTAIVVGGTTGES-------------------PTLTSEE----------KVALYRHVVSVVDKRVPVIA-G   78 (292)
T ss_dssp             HHHHHHHTTCCEEEESSTTTTG-------------------GGSCHHH----------HHHHHHHHHHHHTTSSCEEE-E
T ss_pred             HHHHHHHCCCCEEEECeEccch-------------------hhCCHHH----------HHHHHHHHHHHhCCCceEEE-e
Confidence            3455667899988887553321                   1222221          12334444432  4689963 4


Q ss_pred             cCCCCCHHH---HHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcCCChhhH
Q 037779          229 AGGVATPAD---AAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNYSDPDVL  281 (310)
Q Consensus       229 ~GGI~t~~d---i~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~~~~~~~  281 (310)
                      .|+.++.+.   ++.+.++|||++++..-.+...+.....+-|....++-..|-.+
T Consensus        79 v~~~s~~~~i~~a~~a~~~Gad~ilv~pP~~~~~s~~~i~~~~~~v~~~~~~pi~i  134 (292)
T d1xkya1          79 TGSNNTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVML  134 (292)
T ss_dssp             CCCSCHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEE
T ss_pred             cCcccHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHhccCCCcEEE
Confidence            455543332   33455789999999988887776666655555555554444333

>d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Glutamate mutase, small subunit
species: Clostridium cochlearium [TaxId: 1494]

Probab=88.32  E-value=1.2  Score=33.55  Aligned_cols=54  Identities=13%  Similarity=0.286  Sum_probs=30.3

Q ss_pred             HHHHHHhc--CCCCEEEEccCCCCC-----HHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779          212 LVMQTKQL--GRLPVVHFAAGGVAT-----PADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV  272 (310)
Q Consensus       212 l~~~i~~~--~~iPVv~ia~GGI~t-----~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~  272 (310)
                      ++..+++.  .++||  ++.|++.+     ++...++.++|+++|.=.     +.++...+..+++.+
T Consensus        74 ~~~~l~~~~~~~i~i--ivGG~~~~~~~~~~~~~~~l~~~Gv~~if~~-----~t~~~~~~~~l~~~l  134 (137)
T d1ccwa_          74 LRQKCDEAGLEGILL--YVGGNIVVGKQHWPDVEKRFKDMGYDRVYAP-----GTPPEVGIADLKKDL  134 (137)
T ss_dssp             HHHHHHHTTCTTCEE--EEEESCSSSSCCHHHHHHHHHHTTCSEECCT-----TCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCEE--EEeCCcCCCccccHHHHHHHHHcCCCEEECC-----CCCHHHHHHHHHHHh
Confidence            33444443  36787  44666643     445667778899876422     234555556565554

>d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Pyridoxine 5'-phosphate synthase
family: Pyridoxine 5'-phosphate synthase
domain: Pyridoxine 5'-phosphate synthase
species: Escherichia coli [TaxId: 562]

Probab=87.47  E-value=3.8  Score=33.82  Aligned_cols=191  Identities=15%  Similarity=0.135  Sum_probs=111.9

Q ss_pred             HHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcCCCeee-ecCC
Q 037779           45 PEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIGVDYVD-ESEV  123 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aGad~v~-~~~~  123 (310)
                      .+.|+.++++||++|.+- += .|.|.-       ..+++..+++.+++|+=.-... +.+..+.+.+.--+.+. .++.
T Consensus        27 ~~~a~~~~~~GadgITvH-~R-~DrRHI-------~~~Dv~~l~~~~~~~lNlE~a~-~~e~i~ia~~~kP~qvtLVPe~   96 (242)
T d1m5wa_          27 VQAAFIAEQAGADGITVH-LR-EDRRHI-------TDRDVRILRQTLDTRMNLEMAV-TEEMLAIAVETKPHFCCLVPEK   96 (242)
T ss_dssp             HHHHHHHHTTTCSEEEEE-CC-TTCSSS-------CHHHHHHHHHHCSSEEEEEECS-SHHHHHHHHHHCCSEEEECCCC
T ss_pred             HHHHHHHHHcCCCeEEeC-CC-CCcccc-------chHHHHHHHHHhhccccccccc-chhHHHHHHHhccceEEEeecC
Confidence            388999999999998432 11 245543       3788999999988887332211 33556777777777765 3211


Q ss_pred             ---------CC-------hhHHHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEe-cCCCCCchHHHHHHHHHhhc
Q 037779          124 ---------LT-------PADEENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTK-GEAGTGNIVEAVRHVRSVMG  186 (310)
Q Consensus       124 ---------~~-------~~~~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~-g~~~~~~~~~~~~~~~~~~~  186 (310)
                               +.       ...+++.+++.+..+-++++. +.++++.+.+.|+|.|=++ |+     +..+         
T Consensus        97 r~elTTegGld~~~~~~~L~~~i~~l~~~girvSLFiDp-d~~~i~~a~~lGad~IElhTG~-----Ya~a---------  161 (242)
T d1m5wa_          97 RQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDA-DEEQIKAAAEVGAPFIEIHTGC-----YADA---------  161 (242)
T ss_dssp             SSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEECS-CHHHHHHHHHTTCSEEEEECHH-----HHHC---------
T ss_pred             ccccCcCCceeehhhHHHHHHHHHHHHhcCCeEEEEecc-chhhHHHHhhcCcceeeeeccc-----cccc---------
Confidence                     11       124455555555666677774 7888999999999999776 32     1100         


Q ss_pred             ceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccCC---CHH
Q 037779          187 DIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSG---DPV  262 (310)
Q Consensus       187 ~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~~---dp~  262 (310)
                             ......   ...+. .+...........+-|  =|.=|+ +.+++..+.+. +.+-|-+|=+|+..-   -..
T Consensus       162 -------~~~~~~---~~el~-~i~~aa~~A~~lGL~V--nAGHgL-n~~Nl~~i~~ip~i~EvsIGHaiI~eal~~Gl~  227 (242)
T d1m5wa_         162 -------KTDAEQ---AQELA-RIAKAATFAASLGLKV--NAGHGL-TYHNVKAIAAIPEMHELNIGHAIIGRAVMTGLK  227 (242)
T ss_dssp             -------CSHHHH---HHHHH-HHHHHHHHHHHTTCEE--EEESSC-CTTTHHHHHTCTTEEEEEECHHHHHHHHHHCHH
T ss_pred             -------ccchhh---HHHHH-HHHHHHHHHHhcCCcc--cCCCCc-CccchHHHhcCCCCeEEeccHHHHHHHHHHhHH
Confidence                   000000   00000 0000111111234556  467788 58999887765 788898988776511   134


Q ss_pred             HHHHHHHHHHHc
Q 037779          263 RRARAIVQAVTN  274 (310)
Q Consensus       263 ~~~~~~~~~~~~  274 (310)
                      .++++|++.+++
T Consensus       228 ~aV~~~~~ii~~  239 (242)
T d1m5wa_         228 DAVAEMKRLMLE  239 (242)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            566777766653

>d1kgsa2 c.23.1.1 (A:2-123) PhoB receiver domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.28  E-value=2.5  Score=30.48  Aligned_cols=58  Identities=10%  Similarity=0.155  Sum_probs=40.4

Q ss_pred             cHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHH
Q 037779          209 PYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVT  273 (310)
Q Consensus       209 ~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~  273 (310)
                      .+++++.+++. ..+|++++  .+-++.++..+++++||++++.     ++-++.+....+...++
T Consensus        60 g~~~~~~lr~~~~~~piI~l--t~~~~~~~~~~~~~~Ga~~yl~-----KP~~~~~L~~~i~~~l~  118 (122)
T d1kgsa2          60 GWEILKSMRESGVNTPVLML--TALSDVEYRVKGLNMGADDYLP-----KPFDLRELIARVRALIR  118 (122)
T ss_dssp             HHHHHHHHHHTTCCCCEEEE--ESSCHHHHHHHTCCCCCSEEEE-----SSCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhcCCCCcEEEE--cCCCCHHHHHHHHHcCCceeec-----CCCCHHHHHHHHHHHHH
Confidence            46677777664 46898755  5556788899999999998765     65566666555555543

>d1muma_ c.1.12.7 (A:) 2-methylisocitrate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Phosphoenolpyruvate mutase/Isocitrate lyase-like
domain: 2-methylisocitrate lyase
species: Escherichia coli [TaxId: 562]

Probab=87.10  E-value=7.6  Score=32.63  Aligned_cols=129  Identities=19%  Similarity=0.183  Sum_probs=81.3

Q ss_pred             HHHHHHhcCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCC
Q 037779          129 EENHINKHNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAA  208 (310)
Q Consensus       129 ~~~~~~~~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~  208 (310)
                      +.+.+..  .+..++.++++.-.++.+.+.|.+.+.+.|....-.         .+  ..-+...++-+          .
T Consensus         8 lr~ll~~--~~~~~~~~~~D~~sA~~~e~~Gf~a~~~sg~~~sa~---------~~--G~pD~~~~~~~----------e   64 (289)
T d1muma_           8 FRAALTK--ENPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAG---------SL--GLPDLGISTLD----------D   64 (289)
T ss_dssp             HHHHHHH--CSSEEEEECSSHHHHHHHHHTTCSCEEECHHHHHHT---------TS--CCCSSSCCCHH----------H
T ss_pred             HHHHHhC--CCCEEeecCCCHHHHHHHHHcCCCEEEhhHHHHHHH---------cc--CCCCCCCCChH----------H
Confidence            4444433  358888899999999999999999998864411000         00  00011111111          1


Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCC-HHHH----HHHHHcCCCEEEEcccccc-------CC---CHHHHHHHHHHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVAT-PADA----AMMMQLGCDGVFVGSGVFK-------SG---DPVRRARAIVQAVT  273 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t-~~di----~~~~~~GadgV~VGsai~~-------~~---dp~~~~~~~~~~~~  273 (310)
                      -.+.++.+.+..++||++-++.|-++ +.++    +++.++|+.|+.+=--...       ..   ...++++.++.++.
T Consensus        65 ~~~~~~~i~~a~~~Pvi~D~d~GyG~~~~~v~~~v~~~~~aGvagi~iEDq~~pk~~g~~~~~~~~~~~e~~~ki~aa~~  144 (289)
T d1muma_          65 VLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRCGHRPNKAIVSKEEMVDRIRAAVD  144 (289)
T ss_dssp             HHHHHHHHHHHCCSCEEEECTTCSSSSHHHHHHHHHHHHHHTCSEEEEECBCCCSSTTCCSCCCBCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCeeecccccccccchHHHHHHHHHHHCCCCEEEecCcccccccccccccceecHHHHHHHHHHHHH
Confidence            23455666666789999888988875 6554    5666789999998654321       11   34677888888888


Q ss_pred             cCCChhh
Q 037779          274 NYSDPDV  280 (310)
Q Consensus       274 ~~~~~~~  280 (310)
                      +..+|+.
T Consensus       145 a~~~~d~  151 (289)
T d1muma_         145 AKTDPDF  151 (289)
T ss_dssp             TCSSTTS
T ss_pred             hcCCcch
Confidence            8777744

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=86.88  E-value=1.3  Score=37.83  Aligned_cols=75  Identities=27%  Similarity=0.302  Sum_probs=50.6

Q ss_pred             HHHHHHHHHcCCcEEEeccccc------chhh-----------hcC---CCC-CCCChHHHHHHHhhc-CcceEeecccc
Q 037779           45 PEQARIAEEAGACAVMALERVP------ADIR-----------AQG---GVA-RMSDPQLIKQIKSSV-TIPVMAKARIG  102 (310)
Q Consensus        45 ~~~a~~~~~~Ga~~I~~l~~~~------~d~r-----------~~~---G~~-~~~~~~~i~~i~~~~-~lPv~~kd~i~  102 (310)
                      .++++.+.++|++++...|...      .+.+           .++   |.. +....+.++.+++.+ ++||+....+.
T Consensus       186 ~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~~~ipIi~~GGI~  265 (312)
T d1gtea2         186 VSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGID  265 (312)
T ss_dssp             HHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEESSCC
T ss_pred             HHHHHHHHHhcccceEEEeecccccccccccccccccccccccccccccCcCcchhhHHHHHHHHHHcCCCcEEEEcCCC
Confidence            4779999999999996665110      0000           001   111 111245677788776 69999999998


Q ss_pred             chHHHHHHHHcCCCeee
Q 037779          103 HFVEAQILEAIGVDYVD  119 (310)
Q Consensus       103 ~~~~~~~~~~aGad~v~  119 (310)
                      +.+++..+..+||+.|.
T Consensus       266 ~~~d~~~~l~aGA~~Vq  282 (312)
T d1gtea2         266 SAESGLQFLHSGASVLQ  282 (312)
T ss_dssp             SHHHHHHHHHTTCSEEE
T ss_pred             CHHHHHHHHHcCCCeeE
Confidence            87888888889999997

>d1zesa1 c.23.1.1 (A:3-123) PhoB receiver domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: PhoB receiver domain
species: Escherichia coli [TaxId: 562]

Probab=86.63  E-value=3.6  Score=29.55  Aligned_cols=57  Identities=18%  Similarity=0.209  Sum_probs=39.7

Q ss_pred             cHHHHHHHHhc---CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779          209 PYDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV  272 (310)
Q Consensus       209 ~~~l~~~i~~~---~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~  272 (310)
                      .+++++.+++.   .++||+++  .|-.+.++..+++++|+++++     .++-++.+....+...+
T Consensus        59 G~~l~~~lr~~~~~~~~pvi~l--t~~~~~~~~~~~~~~G~~d~l-----~KP~~~~~L~~~v~~~l  118 (121)
T d1zesa1          59 GIQFIKHLKRESMTRDIPVVML--TARGEEEDRVRGLETGADDYI-----TKPFSPKELVARIKAVM  118 (121)
T ss_dssp             HHHHHHHHHHSTTTTTSCEEEE--ESCCSHHHHHHHHHHTCSEEE-----ESSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCccCCCCeEEEE--ECCCCHHHHHHHHHCCCCEEE-----ECCCCHHHHHHHHHHHH
Confidence            46777777653   36899755  555689999999999999874     45556665555554444

>d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Ketopantoate hydroxymethyltransferase PanB
domain: Ketopantoate hydroxymethyltransferase PanB
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=86.58  E-value=7.8  Score=32.20  Aligned_cols=102  Identities=14%  Similarity=0.101  Sum_probs=52.2

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh----HHHHHHHhhcCcceEeeccc-c----chHHH----
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDP----QLIKQIKSSVTIPVMAKARI-G----HFVEA----  107 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~----~~i~~i~~~~~lPv~~kd~i-~----~~~~~----  107 (310)
                      .+.|+..|+.+.++|+|.|.+.-.+.... ...-+...-.+    -..+.+++...-++++-|.- +    ..+.+    
T Consensus        23 TaYD~~~A~~~~~agiDiiLVGDSlgmv~-~G~~~T~~Vt~d~m~~H~~aV~rga~~~~iv~DmPf~s~~~s~~~a~~nA  101 (262)
T d1oy0a_          23 TAYDYSTARIFDEAGIPVLLVGDSAANVV-YGYDTTVPISIDELIPLVRGVVRGAPHALVVADLPFGSYEAGPTAALAAA  101 (262)
T ss_dssp             ECCSHHHHHHHHTTTCCEEEECTTHHHHT-TCCSSSSSCCGGGTHHHHHHHHHHCTTSEEEEECCTTSSTTCHHHHHHHH
T ss_pred             eCCCHHHHHHHHHcCCCEEEEcCchhhhh-cCCCCcceeeHHHHHHHHHHHHhccccceeEecchhhhcccchHHHHHHH
Confidence            34678999999999999985431000000 00001111122    24566777765555554432 2    12222    


Q ss_pred             -HHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEee
Q 037779          108 -QILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCG  145 (310)
Q Consensus       108 -~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~  145 (310)
                       +.+.+.|||.|-..-.....+.++.+...  +++++.-
T Consensus       102 ~r~~~~~ga~avkleg~~~~~~~I~~L~~~--gIPV~gH  138 (262)
T d1oy0a_         102 TRFLKDGGAHAVKLEGGERVAEQIACLTAA--GIPVMAH  138 (262)
T ss_dssp             HHHHHTTCCSEEEEEBSGGGHHHHHHHHHH--TCCEEEE
T ss_pred             HHHHhccccceeeechhhhhHHHHHHHHhc--CCceEEe
Confidence             23446899998732222345666666553  4555543

>d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Ketopantoate hydroxymethyltransferase PanB
domain: Ketopantoate hydroxymethyltransferase PanB
species: Neisseria meningitidis [TaxId: 487]

Probab=86.21  E-value=8.1  Score=32.04  Aligned_cols=102  Identities=11%  Similarity=0.081  Sum_probs=52.4

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHH----HHHHHhhcCcceEeecc-cc----chHHH----
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQL----IKQIKSSVTIPVMAKAR-IG----HFVEA----  107 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~----i~~i~~~~~lPv~~kd~-i~----~~~~~----  107 (310)
                      .+.|+..|+.++++|+|.|.+.-.+.... ....+...-+++.    .+.+++...-++++-|. ++    ..+.+    
T Consensus        21 Tayd~~~A~~ae~agiDiilVGDSlgm~~-~G~~~T~~vt~d~mi~h~~aV~rga~~~~~i~dmPf~sy~~~~~~~~~a~   99 (260)
T d1o66a_          21 TAYESSFAALMDDAGVEMLLVGDSLGMAV-QGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAAA   99 (260)
T ss_dssp             ECCSHHHHHHHHHTTCCEEEECTTHHHHT-TCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSSSSCHHHHHHHH
T ss_pred             eCCCHHHHHHHHHcCCCEEEEcCCchhee-cCCCCccccchhhhhhhhHHHHccCcceeeecchhhhhhcchhHHHHHHH
Confidence            34678999999999999985431000000 0001112222333    45677766555555443 22    11222    


Q ss_pred             HHHHHcCCCeeeecCCCChhHHHHHHHhcCCCCcEEee
Q 037779          108 QILEAIGVDYVDESEVLTPADEENHINKHNFRVPFVCG  145 (310)
Q Consensus       108 ~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~l~v~~~  145 (310)
                      ..+.++|||.|-..-.....+.++.+..  .+++++.-
T Consensus       100 ~~~~~~gadavk~eg~~~~~~~i~~l~~--~gIPV~gH  135 (260)
T d1o66a_         100 AELMAAGAHMVKLEGGVWMAETTEFLQM--RGIPVCAH  135 (260)
T ss_dssp             HHHHHTTCSEEEEECSGGGHHHHHHHHH--TTCCEEEE
T ss_pred             HHHHHhhhhhccccchhhhhHHHHHHHH--cCCeeEee
Confidence            2345589999874322234455555655  34666553

>d1geha1 c.1.14.1 (A:137-443) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Thermococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: RuBisCo, C-terminal domain
family: RuBisCo, large subunit, C-terminal domain
domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase
species: Archaeon Thermococcus kodakaraensis [TaxId: 311400]

Probab=85.89  E-value=9.2  Score=32.42  Aligned_cols=50  Identities=32%  Similarity=0.541  Sum_probs=41.0

Q ss_pred             EccCCCCCHHHHHHHHH-cCCCEE-EEccccccCCC-HHHHHHHHHHHHHcCCC
Q 037779          227 FAAGGVATPADAAMMMQ-LGCDGV-FVGSGVFKSGD-PVRRARAIVQAVTNYSD  277 (310)
Q Consensus       227 ia~GGI~t~~di~~~~~-~GadgV-~VGsai~~~~d-p~~~~~~~~~~~~~~~~  277 (310)
                      +.+||+ ++..+..+++ +|-|-+ .+|.+|+..++ +.+=+++++++++++..
T Consensus       229 v~sgG~-~~~~vp~~~~~~G~Dvil~~GGgi~gHP~G~aaGa~A~RqA~ea~~~  281 (307)
T d1geha1         229 TSSGGL-HPGNIQPVIEALGTDIVLQLGGGTLGHPDGPAAGARAVRQAIDAIMQ  281 (307)
T ss_dssp             EEESSC-CTTTHHHHHHHTCSSSEEECSHHHHSCTTCHHHHHHHHHHHHHHHTS
T ss_pred             ccCCCC-cHHHHHHHHHHhCCcEEEEcCccccCCCCChHHHHHHHHHHHHHHHh
Confidence            358999 5999999996 698865 57889998876 88889999999987553

>d2ayxa1 c.23.1.1 (A:817-949) Sensor kinase protein RcsC, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Sensor kinase protein RcsC, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.84  E-value=5  Score=29.30  Aligned_cols=53  Identities=21%  Similarity=0.234  Sum_probs=35.7

Q ss_pred             cHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHH
Q 037779          209 PYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAI  268 (310)
Q Consensus       209 ~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~  268 (310)
                      .+++++++++. ..+||+++  .|-.+.++..+++++|++.+     |.++-++......+
T Consensus        67 G~el~~~ir~~~~~~pii~l--t~~~~~~~~~~~~~~G~~~~-----l~KP~~~~~L~~~l  120 (133)
T d2ayxa1          67 GYRLTQRIRQLGLTLPVIGV--TANALAEEKQRCLESGMDSC-----LSKPVTLDVIKQTL  120 (133)
T ss_dssp             CHHHHHHHHHHHCCSCEEEE--ESSTTSHHHHHHHHCCCEEE-----EESSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCEEEE--eccCCHHHHHHHHHcCCCEE-----EECCCCHHHHHHHH
Confidence            46777777664 46898765  44446889999999999987     44544554443333

>d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Fructose-1,6-bisphosphate aldolase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=85.48  E-value=0.69  Score=38.91  Aligned_cols=25  Identities=16%  Similarity=0.333  Sum_probs=21.4

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHHcCCC
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQLGCD  247 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~~Gad  247 (310)
                      ++.|-  ++|||.|.+++.+++++|++
T Consensus       204 ~~gVK--ASGGIrt~~~a~~~i~~g~~  228 (256)
T d2a4aa1         204 KIGLK--VSGGISDLNTASHYILLARR  228 (256)
T ss_dssp             CCEEE--EESSCCSHHHHHHHHHHHHH
T ss_pred             ceeEE--ecCCCCCHHHHHHHHHHHHH
Confidence            56674  58999999999999998877

>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.40  E-value=2.3  Score=35.52  Aligned_cols=53  Identities=19%  Similarity=0.295  Sum_probs=34.1

Q ss_pred             CCCCEEEEccCCCCCHHHH----HHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          220 GRLPVVHFAAGGVATPADA----AMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       220 ~~iPVv~ia~GGI~t~~di----~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      .++||++ -.|.. +.+++    +.+.++|||++++..-++...+.....+-|....++
T Consensus        69 ~~~~vi~-gv~~~-st~~ai~~a~~A~~~Gad~v~v~pP~y~~~s~~~i~~~~~~ia~a  125 (295)
T d1o5ka_          69 GKIPVIV-GAGTN-STEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISER  125 (295)
T ss_dssp             TSSCEEE-ECCCS-CHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTT
T ss_pred             cCCceEe-ecccc-cHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhc
Confidence            3689953 34444 45443    334467999999999888877776655555554444

>d1zgza1 c.23.1.1 (A:2-121) TorCAD operon transcriptional regulator TorD, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: TorCAD operon transcriptional regulator TorD, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=85.37  E-value=2.8  Score=30.04  Aligned_cols=57  Identities=11%  Similarity=0.129  Sum_probs=39.5

Q ss_pred             cHHHHHHHHhcCCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779          209 PYDLVMQTKQLGRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV  272 (310)
Q Consensus       209 ~~~l~~~i~~~~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~  272 (310)
                      .+++++.++....+|++++  .|-.+.++..+++++||+.++.     ++-++.+....+.+.+
T Consensus        60 g~~~~~~~~~~~~~piI~l--t~~~~~~~~~~a~~~Ga~dyl~-----KP~~~~~L~~~i~~~l  116 (120)
T d1zgza1          60 GLMLTRALRERSTVGIILV--TGRSDRIDRIVGLEMGADDYVT-----KPLELRELVVRVKNLL  116 (120)
T ss_dssp             HHHHHHHHHTTCCCEEEEE--ESSCCHHHHHHHHHHTCSEEEE-----SSCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHhccCCCeEEEE--EccCCHHHHHHHHHCCCCEEEE-----CCCCHHHHHHHHHHHH
Confidence            3566777777677898654  5556888999999999998764     5556655554444443

>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Plasmodium falciparum [TaxId: 5833]

Probab=84.88  E-value=2.3  Score=37.84  Aligned_cols=73  Identities=19%  Similarity=0.168  Sum_probs=45.9

Q ss_pred             ceEeeccc--cc---hHHHHHHHHcCCCeeeecCCCC-----------------------hhHHHHHHHh-cCCCCcEE-
Q 037779           94 PVMAKARI--GH---FVEAQILEAIGVDYVDESEVLT-----------------------PADEENHINK-HNFRVPFV-  143 (310)
Q Consensus        94 Pv~~kd~i--~~---~~~~~~~~~aGad~v~~~~~~~-----------------------~~~~~~~~~~-~~~~l~v~-  143 (310)
                      |+++|.--  ..   .+.++.+.+.|+|++.......                       ....+..+.+ .+..++++ 
T Consensus       268 pi~vKlsPd~~~~~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~v~~~~~~~ipIIG  347 (409)
T d1tv5a1         268 LVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIPIIA  347 (409)
T ss_dssp             EEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSCEEE
T ss_pred             ceEEEeCCCCCchhhHHHHHHHHhccccceecccccccccccccccccCCcccchhHHHHHHHHHHHHHHHcCCCceEEE
Confidence            78887322  11   2345677889999987322110                       0123344444 33456544 


Q ss_pred             e-ecCCHHHHHHHHHhCCCEEEEe
Q 037779          144 C-GCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       144 ~-~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                      + ++.|.+++.+.+.+||+.|.+.
T Consensus       348 vGGI~s~~Da~e~i~AGAs~VQv~  371 (409)
T d1tv5a1         348 SGGIFSGLDALEKIEAGASVCQLY  371 (409)
T ss_dssp             ESSCCSHHHHHHHHHTTEEEEEES
T ss_pred             ECCCCCHHHHHHHHHcCCCHHhhh
Confidence            3 4999999999999999999874

>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Escherichia coli [TaxId: 562]

Probab=84.83  E-value=9.3  Score=31.55  Aligned_cols=83  Identities=13%  Similarity=0.142  Sum_probs=45.1

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChH---HHHHHHhhc--CcceEeeccccch----HHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQ---LIKQIKSSV--TIPVMAKARIGHF----VEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~---~i~~i~~~~--~lPv~~kd~i~~~----~~~~~~~~aGad  116 (310)
                      +.++.+.+.|++++....       ..+-...+...+   .++.+.+.+  .+|+++...-...    +..+.+.++|+|
T Consensus        26 ~~i~~l~~~Gv~Gl~~~G-------stGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~~~s~~~~i~~~~~a~~~Gad   98 (292)
T d2a6na1          26 KLIDYHVASGTSAIVSVG-------TTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSGIV   98 (292)
T ss_dssp             HHHHHHHHHTCCEEEESS-------TTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHTTTTSSCC
T ss_pred             HHHHHHHHcCCCEEEECe-------eccchhhCCHHHHHHHhhhhhhhccccceeEeecccchHHHHHHHhccHHhcCCc
Confidence            679999999999984431       011011122222   333344433  5899887443322    344555669999


Q ss_pred             eee-ecCC---CChhHHHHHHHh
Q 037779          117 YVD-ESEV---LTPADEENHINK  135 (310)
Q Consensus       117 ~v~-~~~~---~~~~~~~~~~~~  135 (310)
                      .+. .+..   .+.+++.+.++.
T Consensus        99 ~~~~~pP~~~~~~~~~i~~~f~~  121 (292)
T d2a6na1          99 GCLTVTPYYNRPSQEGLYQHFKA  121 (292)
T ss_dssp             EEEEECCCSSCCCHHHHHHHHHH
T ss_pred             ceeccCCCCCCCCHHHHHHHHHH
Confidence            987 3321   345556555543

>d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Escherichia coli [TaxId: 562]

Probab=84.67  E-value=0.28  Score=41.41  Aligned_cols=37  Identities=24%  Similarity=0.426  Sum_probs=31.0

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHH-cCCCEEEEccccccCCC
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQ-LGCDGVFVGSGVFKSGD  260 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~-~GadgV~VGsai~~~~d  260 (310)
                      ++||  +..|+| +++++.+++. -+.||++||++-...++
T Consensus       204 ~v~i--LYGGSV-~~~N~~~i~~~~~vdG~LVGgASl~~~~  241 (255)
T d1trea_         204 QVII--QYGGSV-NASNAAELFAQPDIDGALVGGASLKADA  241 (255)
T ss_dssp             HCEE--EECSCC-CTTTHHHHHTSTTCCEEEESGGGGCHHH
T ss_pred             CccE--EecCCc-CHhHHHHHhcCCCCCEEEechhhcCHHH
Confidence            4688  678999 5999999997 59999999999988544

>d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Bacillus anthracis [TaxId: 1392]

Probab=84.62  E-value=6.4  Score=32.88  Aligned_cols=113  Identities=19%  Similarity=0.281  Sum_probs=65.5

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc-------------c-hHH
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG-------------H-FVE  106 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~-------------~-~~~  106 (310)
                      +...++.++.+.++|++.|       .|+..+..      ...+..+.+..+.|+++.-.-+             . .+.
T Consensus       100 DT~~~~Va~~al~~G~~iI-------NDvsg~~~------D~~m~~~~~~~~~~~vlmH~~~~~~~~~~~~~~~~~~~~~  166 (273)
T d1tx2a_         100 DTYKAEVAKQAIEAGAHII-------NDIWGAKA------EPKIAEVAAHYDVPIILMHNRDNMNYRNLMADMIADLYDS  166 (273)
T ss_dssp             ECSCHHHHHHHHHHTCCEE-------EETTTTSS------CTHHHHHHHHHTCCEEEECCCSCCCCSSHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHcCCeEE-------eccccccc------hhHHHHHHHhhcccccccccccccccccccchhhhhHHHH
Confidence            3344899999999999987       35532211      2244455556677776642111             0 145


Q ss_pred             HHHHHHcCCCe--eeec----CCCChhH---HHHHHHh-cCCCCcEEeecCCH-----------H--------HHHHHHH
Q 037779          107 AQILEAIGVDY--VDES----EVLTPAD---EENHINK-HNFRVPFVCGCRNL-----------G--------ESLRRIR  157 (310)
Q Consensus       107 ~~~~~~aGad~--v~~~----~~~~~~~---~~~~~~~-~~~~l~v~~~v~t~-----------~--------ea~~a~~  157 (310)
                      ++.+.++|++.  |+..    ...+..+   +.+.+.. +.++.++++++...           +        -...+..
T Consensus       167 i~~~~~~GI~~~~IiiDPGiGFgK~~~~n~~ll~~i~~l~~~g~PilvG~SRKsfig~~~~~~~~eRl~~Tla~~~~a~~  246 (273)
T d1tx2a_         167 IKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPVLLGTSRKSFIGHVLDLPVEERLEGTGATVCLGIE  246 (273)
T ss_dssp             HHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTGGGGGGGCSCBEEECTTCHHHHHHHTCCGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCChheEecCccCCccchHHHHHHHHhhhcccccCCCcEEEEehHHHHHHHHhCCCHHHhhHHHHHHHHHHHH
Confidence            67778899965  5522    2234443   4444443 34577888776321           1        2224556


Q ss_pred             hCCCEEEEe
Q 037779          158 EGAAMIRTK  166 (310)
Q Consensus       158 ~Gad~I~v~  166 (310)
                      .|++++.+|
T Consensus       247 ~Ga~ilRvH  255 (273)
T d1tx2a_         247 KGCEFVRVH  255 (273)
T ss_dssp             TTCSEEEES
T ss_pred             CCCCEEEeC
Confidence            799999998

>d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator PleD, receiver domain
species: Caulobacter crescentus [TaxId: 155892]

Probab=84.45  E-value=6  Score=29.02  Aligned_cols=56  Identities=16%  Similarity=0.186  Sum_probs=38.0

Q ss_pred             HHHHHHHHhc---CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779          210 YDLVMQTKQL---GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV  272 (310)
Q Consensus       210 ~~l~~~i~~~---~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~  272 (310)
                      +++.+.+++.   .++||+++  +|-.+.+...+++++||+.++.     ++-++......+...+
T Consensus        61 ~~~~~~ir~~~~~~~~piI~l--t~~~~~~~~~~a~~~Ga~dyl~-----KP~~~~~L~~~i~~~l  119 (139)
T d1w25a1          61 FTVCRKLKDDPTTRHIPVVLI--TALDGRGDRIQGLESGASDFLT-----KPIDDVMLFARVRSLT  119 (139)
T ss_dssp             HHHHHHHHHSTTTTTSCEEEE--ECSSCHHHHHHHHHHTCCEEEE-----SSCCHHHHHHHHHHHH
T ss_pred             hHHHHHhhhcccccCCCEEEE--EcCCCHHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHHHHH
Confidence            4555656543   46899755  6666899999999999999865     6556655544444433

>d1ys7a2 c.23.1.1 (A:7-127) Transcriptional regulatory protein PrrA, N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Transcriptional regulatory protein PrrA, N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.40  E-value=2.2  Score=30.90  Aligned_cols=57  Identities=12%  Similarity=0.158  Sum_probs=40.8

Q ss_pred             cHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779          209 PYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV  272 (310)
Q Consensus       209 ~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~  272 (310)
                      .+++.+.+++. .++||+++  .+-.+.++..+++++||+.+     |.++-++.+....+...+
T Consensus        60 G~el~~~ir~~~~~~piI~l--t~~~~~~~~~~a~~~Ga~dy-----l~KP~~~~~L~~~i~~~l  117 (121)
T d1ys7a2          60 GVSVVTALRAMDNDVPVCVL--SARSSVDDRVAGLEAGADDY-----LVKPFVLAELVARVKALL  117 (121)
T ss_dssp             HHHHHHHHHHTTCCCCEEEE--ECCCTTTCCCTTTTTTCSEE-----EESSCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHhcCCCCEEEEE--EeeCCHHHHHHHHHCCCCEE-----EECCCCHHHHHHHHHHHH
Confidence            46777888764 47899765  55567888999999999997     456656666555555444

>d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: NeuB-like
domain: Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=83.50  E-value=6.3  Score=33.13  Aligned_cols=67  Identities=13%  Similarity=0.181  Sum_probs=48.0

Q ss_pred             CCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHH
Q 037779          137 NFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQT  216 (310)
Q Consensus       137 ~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i  216 (310)
                      ..++.+++++-+.+.+....+.|++++++...                                    + ...+++++.+
T Consensus        99 ~~gi~~~~s~fd~~s~~~l~~l~~~~iKIaS~------------------------------------d-~~n~~Li~~i  141 (295)
T d1vlia2          99 EKQVIFLSTVCDEGSADLLQSTSPSAFKIASY------------------------------------E-INHLPLLKYV  141 (295)
T ss_dssp             HTTCEEECBCCSHHHHHHHHTTCCSCEEECGG------------------------------------G-TTCHHHHHHH
T ss_pred             hcccceeeecccceeeeeecccCcceeEeccc------------------------------------c-cccHHHHHHH
Confidence            35788899998988888888889988888521                                    1 1256788888


Q ss_pred             HhcCCCCEEEEccCCCCCHHHHHHHHH
Q 037779          217 KQLGRLPVVHFAAGGVATPADAAMMMQ  243 (310)
Q Consensus       217 ~~~~~iPVv~ia~GGI~t~~di~~~~~  243 (310)
                      .+. ..||+ +..||- +.+++..+.+
T Consensus       142 ~k~-~kpvi-istG~~-~~~ei~~~~~  165 (295)
T d1vlia2         142 ARL-NRPMI-FSTAGA-EISDVHEAWR  165 (295)
T ss_dssp             HTT-CSCEE-EECTTC-CHHHHHHHHH
T ss_pred             Hhc-CCchh-eechhh-hhhhHHHHHh
Confidence            764 57986 456664 7888776663

>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.39  E-value=11  Score=31.20  Aligned_cols=82  Identities=16%  Similarity=0.112  Sum_probs=46.7

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCC-CCCCChH---HHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGV-ARMSDPQ---LIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGV  115 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~-~~~~~~~---~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGa  115 (310)
                      +.++.+.+.|++++....        ..|. ..+...+   .++.+.+.+  ++|+++...-..    .+.++.+.++|+
T Consensus        32 ~~i~~li~~Gv~Gi~v~G--------~tGE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~~s~~~~i~~a~~a~~~Ga  103 (296)
T d1xxxa1          32 RLANHLVDQGCDGLVVSG--------TTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGA  103 (296)
T ss_dssp             HHHHHHHHTTCSEEEESS--------TTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHcCCCEEEECe--------eccchhhCCHHHHHHHHHHHHHHhccccceEeccccchhHHHHHHHHHHHHhcC
Confidence            679999999999984330        0111 1122222   233334333  488887644332    245677888999


Q ss_pred             Ceeee-c-C--CCChhHHHHHHHh
Q 037779          116 DYVDE-S-E--VLTPADEENHINK  135 (310)
Q Consensus       116 d~v~~-~-~--~~~~~~~~~~~~~  135 (310)
                      |.+.+ + .  ..+..++.+.+++
T Consensus       104 d~v~i~~P~~~~~~~~~l~~~~~~  127 (296)
T d1xxxa1         104 HGLLVVTPYYSKPPQRGLQAHFTA  127 (296)
T ss_dssp             SEEEEECCCSSCCCHHHHHHHHHH
T ss_pred             CeEEEEeccCCCCCHHHHHHHHHH
Confidence            99873 2 1  1245556666654

>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.32  E-value=5.6  Score=33.17  Aligned_cols=111  Identities=15%  Similarity=0.105  Sum_probs=63.5

Q ss_pred             CCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEee-ccccchHHHHHHHHcCCCeee--
Q 037779           43 VTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAK-ARIGHFVEAQILEAIGVDYVD--  119 (310)
Q Consensus        43 ~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~k-d~i~~~~~~~~~~~aGad~v~--  119 (310)
                      +.-++++.+.++|++++... ..|.+.           .+.+++..+..++..+.- ......+..+.+.+..-.+|-  
T Consensus       110 G~~~f~~~~~~~Gv~Gliip-DlP~ee-----------~~~~~~~~~~~~l~~I~lvaPtt~~~Ri~~i~~~a~gFiY~v  177 (267)
T d1qopa_         110 GIDAFYARCEQVGVDSVLVA-DVPVEE-----------SAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGRGYTYLL  177 (267)
T ss_dssp             CHHHHHHHHHHHTCCEEEET-TCCGGG-----------CHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSCEEEE
T ss_pred             CchHHHHHHHhcCCCceecc-chhhhh-----------hHHHHHhhhccCceEEEEecccccHHHHHHHHhhCchhhhhh
Confidence            33478999999999998432 222211           345666666666644321 111122345444443222221  


Q ss_pred             ------ecC---CCChhHHHHHHHhcCCCCcEEe--ecCCHHHHHHHHHhCCCEEEEe
Q 037779          120 ------ESE---VLTPADEENHINKHNFRVPFVC--GCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       120 ------~~~---~~~~~~~~~~~~~~~~~l~v~~--~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                            +..   .....+.++.++++. ++++.+  +++|++++.++.+.+||.+.+.
T Consensus       178 s~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVG  234 (267)
T d1qopa_         178 SRSGVTGAENRGALPLHHLIEKLKEYH-AAPALQGFGISSPEQVSAAVRAGAAGAISG  234 (267)
T ss_dssp             SSSSCCCSSSCC--CCHHHHHHHHHTT-CCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred             cccccCCcccccchhHHHHHHHHhhhc-cCCceeecccCCHHHHHHHHhcCCCEEEEC
Confidence                  111   112346666776642 455555  6999999999999999998884

>d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387 {Mesorhizobium loti [TaxId: 381]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Mll9387-like
domain: Uncharacterized protein Mll9387
species: Mesorhizobium loti [TaxId: 381]

Probab=83.29  E-value=8.5  Score=30.46  Aligned_cols=104  Identities=13%  Similarity=0.055  Sum_probs=59.9

Q ss_pred             ChhHHHHHHHh--cCCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCC-----CCchHHHHHHHHHhhcceecccccCch
Q 037779          125 TPADEENHINK--HNFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAG-----TGNIVEAVRHVRSVMGDIRVLRNMDDD  197 (310)
Q Consensus       125 ~~~~~~~~~~~--~~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~d  197 (310)
                      +..+..+.+++  ...+..++.++++.--++.+.+.|.|++.+.+...     .+..              .-+..+. |
T Consensus         4 tr~e~~~~lr~~l~~~~~l~~~g~~d~lsAklae~aGfdai~~~~~g~~~s~g~~~~--------------~g~l~~~-d   68 (197)
T d2p10a1           4 TRSELVDRFQKKIRAGEPIIGGGAGTGLSAKSEEAGDIDLIVIYNSGRYRMAGRGSL--------------AGLLAYG-N   68 (197)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHHTTCSEEEECHHHHHHHTTCCGG--------------GGGBTEE-E
T ss_pred             CHHHHHHHHHHHHhCCCCEEEcccccHHHHHHHHHcCCCEEEEecHHHHHHcCCccc--------------ccccChh-H
Confidence            44555555554  22347888899999999999999999998764311     0100              0000000 0


Q ss_pred             hHHhhhccCCCcHHHHHHHHhc-CCCCEEEEccCCCCCHHH----HHHHHHcCCCEEEE
Q 037779          198 EVFTFAKNIAAPYDLVMQTKQL-GRLPVVHFAAGGVATPAD----AAMMMQLGCDGVFV  251 (310)
Q Consensus       198 ~~~~~~~~~~~~~~l~~~i~~~-~~iPVv~ia~GGI~t~~d----i~~~~~~GadgV~V  251 (310)
                      .       .....+...++... .++||++-+. |-+.+.+    ++++.++|+.||.+
T Consensus        69 ~-------~~~~~~~a~~i~~~v~~iPviaD~d-G~g~~~nv~rtv~~~~~aG~agI~~  119 (197)
T d2p10a1          69 A-------NQIVVDMAREVLPVVRHTPVLAGVN-GTDPFMVMSTFLRELKEIGFAGVQN  119 (197)
T ss_dssp             H-------HHHHHHHHHHHGGGCSSSCEEEEEC-TTCTTCCHHHHHHHHHHHTCCEEEE
T ss_pred             H-------HHHHHHHHHHHHHhcccCceEEecC-CCCcchhHHHHHHHHHHcCCeEEec
Confidence            0       00013344444443 4799987776 4444444    55666789999964

>d2fdsa1 c.1.2.3 (A:1-324) Protozoan orotidine monophosphate decarboxylase {Plasmodium berghei [TaxId: 5821]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Protozoan orotidine monophosphate decarboxylase
species: Plasmodium berghei [TaxId: 5821]

Probab=83.19  E-value=4.1  Score=35.03  Aligned_cols=61  Identities=11%  Similarity=0.132  Sum_probs=39.6

Q ss_pred             HHHHHHHhc-CCCCEEEEccCCCCC-HHHHHHHH------HcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          211 DLVMQTKQL-GRLPVVHFAAGGVAT-PADAAMMM------QLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       211 ~l~~~i~~~-~~iPVv~ia~GGI~t-~~di~~~~------~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      +-++.+++. .+.+++ +  =||+. ..|..+.+      +.|++-+++|+.|++++||.+.++++++.+.+
T Consensus       249 ~el~~iR~~~~~~~iL-~--PGIGaQggDq~rv~~~~~a~~~g~~~ivvgR~I~~A~dp~~aa~~i~~~i~~  317 (324)
T d2fdsa1         249 EEMKIIRNKFPDSYIL-S--PGIGAQNGDLYKTLKNGYNKDYEKLLINVGRAITKSPNPKKSSESYYNQIIQ  317 (324)
T ss_dssp             HHHHHHHHHSTTCCEE-E--CCC-----CHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCeEE-e--CcccCCCCCHHHHhChhhhhhcCceEEEeChhhccCCCHHHHHHHHHHHHHH
Confidence            334445443 456664 3  45542 23344443      24788999999999999999999998888763

>d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Methyltetrahydrofolate-utiluzing methyltransferases
domain: Cobalamin-dependent methionine synthase MetH, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=82.83  E-value=2.1  Score=35.84  Aligned_cols=102  Identities=15%  Similarity=0.128  Sum_probs=58.2

Q ss_pred             cceeeeecceEEEEeccCCCccccccceeeecCCccccCCCHHHHHHHHHcCCcEEEecc-cccchhhhcCCCCCCCChH
Q 037779            4 TGVVTVYGNGAIYETTKKSPFSVKVGLAQMLRGGVIMDVVTPEQARIAEEAGACAVMALE-RVPADIRAQGGVARMSDPQ   82 (310)
Q Consensus         4 ~~~~~~~~~~~i~e~k~~sp~~~~~~~~~~l~~g~i~~~~~~~~a~~~~~~Ga~~I~~l~-~~~~d~r~~~G~~~~~~~~   82 (310)
                      +-.++....=+|.|---.+=++   .+.+.++.++....  .+.|+...++||+.| ++| ..|.+..    ...+  ..
T Consensus         7 ~~~~~~~~f~iIGEriN~tg~k---~~~~~~~~~d~d~~--~~~A~~qv~~GA~iL-DIn~~~~~~~e----~~~m--~~   74 (260)
T d3bofa1           7 SKLVTFDHFVVIGERINPAGRK---KLWAEMQKGNEEIV--IKEAKTQVEKGAEVL-DVNFGIESQID----VRYV--EK   74 (260)
T ss_dssp             SCEEESSSCEEEEEEECCTTCH---HHHHHHHTTCSHHH--HHHHHHHHHTTCSEE-EEECSSGGGSC----HHHH--HH
T ss_pred             ceeecCCCcEEEEeeCchhhHH---HHHHHHHcCCHHHH--HHHHHHHHHcCCCEE-EeecCCchhhh----HHHH--HH
Confidence            3456777777899844333111   12333344321111  378999999999998 776 2221110    0001  34


Q ss_pred             HHHHHHhhcCcceEeeccccchHHHHHHHHc--CCCeee
Q 037779           83 LIKQIKSSVTIPVMAKARIGHFVEAQILEAI--GVDYVD  119 (310)
Q Consensus        83 ~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~a--Gad~v~  119 (310)
                      .++.++..+++|+++...  .++-++...++  |++.|-
T Consensus        75 li~~l~~~~d~PlsIDT~--~~~v~eaaLk~~~G~~iIN  111 (260)
T d3bofa1          75 IVQTLPYVSNVPLSLDIQ--NVDLTERALRAYPGRSLFN  111 (260)
T ss_dssp             HHHHHHHHTCSCEEEECC--CHHHHHHHHHHCSSCCEEE
T ss_pred             HHHHHHhcCCCCccccCC--CHHHHHHHHHHhcCcceEe
Confidence            566777788999977644  33455666665  887775

>d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related protein TM1436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: GlpP-like
family: GlpP-like
domain: Glycerol uptake operon antiterminator-related protein TM1436
species: Thermotoga maritima [TaxId: 2336]

Probab=82.57  E-value=8.6  Score=29.83  Aligned_cols=122  Identities=14%  Similarity=0.146  Sum_probs=65.4

Q ss_pred             hHHHHHHHhhcCcceEee-cccc----chHHHHHHHHcCCCeeeecCCCChhHHHHHHHhcCCC-C--cEEeecCCHHHH
Q 037779           81 PQLIKQIKSSVTIPVMAK-ARIG----HFVEAQILEAIGVDYVDESEVLTPADEENHINKHNFR-V--PFVCGCRNLGES  152 (310)
Q Consensus        81 ~~~i~~i~~~~~lPv~~k-d~i~----~~~~~~~~~~aGad~v~~~~~~~~~~~~~~~~~~~~~-l--~v~~~v~t~~ea  152 (310)
                      .+.++.++++ +..++++ |.+.    +..-++-+.+.++|+|+.+    -..+++..++.+.- +  .++.+..+.+-.
T Consensus        34 ~~~v~~~k~~-gK~v~VHiDLi~GL~~d~~av~flk~~~~dGIIST----k~~~i~~Ak~~Gl~tIqR~FliDS~al~~~  108 (172)
T d1vkfa_          34 KFHLKILKDR-GKTVFVDMDFVNGLGEGEEAILFVKKAGADGIITI----KPKNYVVAKKNGIPAVLRFFALDSKAVERG  108 (172)
T ss_dssp             HHHHHHHHHT-TCEEEEEGGGEETCCSSHHHHHHHHHHTCSEEEES----CHHHHHHHHHTTCCEEEEEECCSHHHHHHH
T ss_pred             HHHHHHHHHc-CCEEEEEeeecCCCCCCHHHHHHHHHcCCCEEEEC----CHHHHHHHHHcCCeEEEEEEeeehHHHHHH
Confidence            3445555544 4445554 4442    2222333455899998753    34556666654432 1  233444445544


Q ss_pred             HHHH-HhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHHHhcCCCCEEEEccCC
Q 037779          153 LRRI-REGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQTKQLGRLPVVHFAAGG  231 (310)
Q Consensus       153 ~~a~-~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~iPVv~ia~GG  231 (310)
                      .+.. +..+|+|=+-                         |..             ....++   ++..+.|+  ||+|=
T Consensus       109 ~~~i~~~~PD~IEiL-------------------------PG~-------------i~p~ii---~~~~~~pi--IAGGL  145 (172)
T d1vkfa_         109 IEQIETLGVDVVEVL-------------------------PGA-------------VAPKVA---RKIPGRTV--IAAGL  145 (172)
T ss_dssp             HHHHHHHTCSEEEEE-------------------------SGG-------------GHHHHH---TTSTTSEE--EEESC
T ss_pred             HHHHhhcCCCEEEEC-------------------------Cch-------------hhHHHH---HHhcCCCE--EeeCC
Confidence            4433 4567776654                         110             012232   33345688  77888


Q ss_pred             CCCHHHHHHHHHcCCCEEEE
Q 037779          232 VATPADAAMMMQLGCDGVFV  251 (310)
Q Consensus       232 I~t~~di~~~~~~GadgV~V  251 (310)
                      |.+.+++.++++.| .+|.-
T Consensus       146 I~~~edv~~al~~g-~aVST  164 (172)
T d1vkfa_         146 VETEEEAREILKHV-SAIST  164 (172)
T ss_dssp             CCSHHHHHHHTTTS-SEEEE
T ss_pred             cCCHHHHHHHHhcC-eEEEC
Confidence            99999999999654 46644

>d2btma_ c.1.1.1 (A:) Triosephosphate isomerase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.34  E-value=0.67  Score=38.82  Aligned_cols=45  Identities=20%  Similarity=0.348  Sum_probs=34.4

Q ss_pred             CCCEEEEccCCCCCHHHHHHHHHc-CCCEEEEccccccCCCHHHHHHHHHHHHHcC
Q 037779          221 RLPVVHFAAGGVATPADAAMMMQL-GCDGVFVGSGVFKSGDPVRRARAIVQAVTNY  275 (310)
Q Consensus       221 ~iPVv~ia~GGI~t~~di~~~~~~-GadgV~VGsai~~~~dp~~~~~~~~~~~~~~  275 (310)
                      .+||  +..|.+ +++++.+++.. +.||++||++=..       .++|.+.++++
T Consensus       204 ~i~i--lYGGSV-~~~N~~~i~~~~~vDG~LVG~ASl~-------~~~F~~Ii~a~  249 (251)
T d2btma_         204 AIRI--QYGGSV-KPDNIRDFLAQQQIDGALVGGASLE-------PASFLQLVEAG  249 (251)
T ss_dssp             TSEE--EEESSC-CTTTHHHHHTSTTCCEEEESGGGSS-------HHHHHHHHHTT
T ss_pred             cCcE--EeeCCC-CHhHHHHHhcCCCCCEEEechHhCC-------HHHHHHHHHHh
Confidence            5788  568888 69999999985 8999999998876       34455555544

>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Escherichia coli [TaxId: 562]

Probab=81.84  E-value=12  Score=30.74  Aligned_cols=81  Identities=12%  Similarity=0.090  Sum_probs=44.8

Q ss_pred             HHHHHHHHcCCcEEEecccccchhhhcCCCCCCCCh---HHHHHHHhhc--CcceEeeccccc----hHHHHHHHHcCCC
Q 037779           46 EQARIAEEAGACAVMALERVPADIRAQGGVARMSDP---QLIKQIKSSV--TIPVMAKARIGH----FVEAQILEAIGVD  116 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~---~~i~~i~~~~--~lPv~~kd~i~~----~~~~~~~~~aGad  116 (310)
                      +.++.+.+.|+++|...- ...|.      ..++..   +.++.+.+.+  ++|+++...-..    .+.++.+.++|+|
T Consensus        27 ~~i~~l~~~Gv~gi~~~G-~tGE~------~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~s~~~~i~~a~~a~~~Gad   99 (295)
T d1hl2a_          27 RLVQFNIQQGIDGLYVGG-STGEA------FVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYGFD   99 (295)
T ss_dssp             HHHHHHHHHTCSEEEESS-GGGTG------GGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHcCCCEEEECe-Eccch------hhCCHHHHHHHHhhhHHhhccccceeeccccchhhHHHHHHHHHHhcCCc
Confidence            678888999999984431 00011      112212   2344444443  578887643322    2456778889999


Q ss_pred             eee-ecCC---CChhHHHHHH
Q 037779          117 YVD-ESEV---LTPADEENHI  133 (310)
Q Consensus       117 ~v~-~~~~---~~~~~~~~~~  133 (310)
                      .+. .+..   .+.+++...+
T Consensus       100 ~~~v~~p~~~~~~~~~~~~~~  120 (295)
T d1hl2a_         100 AVSAVTPFYYPFSFEEHCDHY  120 (295)
T ss_dssp             EEEEECCCSSCCCHHHHHHHH
T ss_pred             eeeeeeccccCCChHHHHHHH
Confidence            987 3221   2445555444

>d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Escherichia coli [TaxId: 562]

Probab=81.70  E-value=8  Score=32.44  Aligned_cols=112  Identities=21%  Similarity=0.320  Sum_probs=63.7

Q ss_pred             cCCCHHHHHHHHHcCCcEEEecccccchhhhcCCCCCCCChHHHHHHHhhcCcceEeecccc------------------
Q 037779           41 DVVTPEQARIAEEAGACAVMALERVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIG------------------  102 (310)
Q Consensus        41 ~~~~~~~a~~~~~~Ga~~I~~l~~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~------------------  102 (310)
                      +...++.|+.+.++||+.|       .|+..+.      +.+.++.++ ..+.|+++.-.-+                  
T Consensus        96 DT~~~eVa~~al~~Ga~iI-------NDvsg~~------~~~~~~~va-~~~~~~vlmh~~g~p~~~~~~~~y~dv~~~v  161 (282)
T d1ajza_          96 DTSKPEVIRESAKVGAHII-------NDIRSLS------EPGALEAAA-ETGLPVCLMHMQGNPKTMQEAPKYDDVFAEV  161 (282)
T ss_dssp             ECCCHHHHHHHHHTTCCEE-------CCTTTTC------STTHHHHHH-HHTCCEEEECCSSCTTCCSCCCCCSCHHHHH
T ss_pred             EecChHHHHHHHhcCceEE-------echhhcc------cchhHHHhh-ccCceEEEeccCCCccccccCCcccchhhhh
Confidence            3344799999999999987       4563221      244454444 4466666532111                  


Q ss_pred             --ch-HHHHHHHHcCC--Ceeeec----CCCChhH---HHHHHHh-cCCCCcEEeecCC-----------HH--------
Q 037779          103 --HF-VEAQILEAIGV--DYVDES----EVLTPAD---EENHINK-HNFRVPFVCGCRN-----------LG--------  150 (310)
Q Consensus       103 --~~-~~~~~~~~aGa--d~v~~~----~~~~~~~---~~~~~~~-~~~~l~v~~~v~t-----------~~--------  150 (310)
                        ++ ..++.+.++|.  +.|+..    ...++.+   +.+.+.. +..+.++++++.-           ++        
T Consensus       162 ~~~~~~~~~~~~~~GI~~~~IilDPGiGFgK~~~~n~~ll~~l~~~~~~~~PiLvG~SRKsfi~~~~~~~~~~R~~~T~a  241 (282)
T d1ajza_         162 NRYFIEQIARCEQAGIAKEKLLLDPGFGFGKNLSHNYSLLARLAEFHHFNLPLLVGMSRKSMIGQLLNVGPSERLSGSLA  241 (282)
T ss_dssp             HHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTGGGGGGGCSCBEECCTTCHHHHHHHTCCGGGCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHhhEecCCCcCcCCChhhhHHHHhhcchhhccccceEEeccHHHHHHHHhCCChhhhchhHHH
Confidence              01 35567788998  445422    3344444   3344433 3357777777642           11        


Q ss_pred             HHHHHHHhCCCEEEEe
Q 037779          151 ESLRRIREGAAMIRTK  166 (310)
Q Consensus       151 ea~~a~~~Gad~I~v~  166 (310)
                      -...+...|++++.+|
T Consensus       242 ~~~~a~~~Ga~iiRVH  257 (282)
T d1ajza_         242 CAVIAAMQGAHIIRVH  257 (282)
T ss_dssp             HHHHHHHTTCSEEEES
T ss_pred             HHHHHHHCCCCEEEeC
Confidence            1123456799999998

>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.65  E-value=4.2  Score=34.00  Aligned_cols=53  Identities=15%  Similarity=0.172  Sum_probs=33.3

Q ss_pred             CCCCEEEEccCCCCCHHHHH----HHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          220 GRLPVVHFAAGGVATPADAA----MMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       220 ~~iPVv~ia~GGI~t~~di~----~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      .++|+++ -.|+- +.+++.    .+.++|+|++++....+...+.....+-|....++
T Consensus        75 ~~~~vi~-g~~~~-s~~~~i~~a~~a~~~Gad~v~i~~P~~~~~~~~~l~~~~~~v~~~  131 (296)
T d1xxxa1          75 DRARVIA-GAGTY-DTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADA  131 (296)
T ss_dssp             TTSEEEE-ECCCS-CHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTT
T ss_pred             cccceEe-ccccc-hhHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHHHHHHh
Confidence            4688863 45554 455443    33457999999999988877655444444444443

>d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI
species: Escherichia coli [TaxId: 562]

Probab=81.59  E-value=5  Score=31.71  Aligned_cols=24  Identities=21%  Similarity=0.187  Sum_probs=22.0

Q ss_pred             EeecCCHHHHHHHHHhCCCEEEEe
Q 037779          143 VCGCRNLGESLRRIREGAAMIRTK  166 (310)
Q Consensus       143 ~~~v~t~~ea~~a~~~Gad~I~v~  166 (310)
                      +|++++.++++.+.++|+|++++.
T Consensus         5 ICGIt~~~d~~~~~~~gaD~iGfi   28 (198)
T d1piia1           5 VCGLTRGQDAKAAYDAGAIYGGLI   28 (198)
T ss_dssp             ECCCCSHHHHHHHHHHTCSEEEEE
T ss_pred             EcCCCcHHHHHHHHhCCCCEEEEE
Confidence            578899999999999999999986

>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Escherichia coli [TaxId: 562]

Probab=81.58  E-value=5.1  Score=33.33  Aligned_cols=53  Identities=17%  Similarity=0.281  Sum_probs=34.3

Q ss_pred             CCCCEEEEccCCCCCHHHHHHHH----HcCCCEEEEccccccCCCHHHHHHHHHHHHHc
Q 037779          220 GRLPVVHFAAGGVATPADAAMMM----QLGCDGVFVGSGVFKSGDPVRRARAIVQAVTN  274 (310)
Q Consensus       220 ~~iPVv~ia~GGI~t~~di~~~~----~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~  274 (310)
                      .++|+++ ..|+- +.++..++.    ++|+|++++..-++...+..+..+-|....++
T Consensus        69 ~~~~vi~-g~~~~-s~~~~i~~~~~a~~~Gad~~~~~pP~~~~~~~~~i~~~f~~v~~~  125 (292)
T d2a6na1          69 GRIPVIA-GTGAN-ATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEH  125 (292)
T ss_dssp             TSSCEEE-ECCCS-SHHHHHHHHHTTTTSSCCEEEEECCCSSCCCHHHHHHHHHHHHHT
T ss_pred             ccceeEe-ecccc-hHHHHHHHhccHHhcCCcceeccCCCCCCCCHHHHHHHHHHHhhc
Confidence            4689963 34444 455544433    46999999999988877766655555555554

>d1p2fa2 c.23.1.1 (A:1-120) Response regulator DrrB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: CheY-related
domain: Response regulator DrrB
species: Thermotoga maritima [TaxId: 2336]

Probab=81.34  E-value=2.5  Score=30.43  Aligned_cols=60  Identities=13%  Similarity=0.089  Sum_probs=43.7

Q ss_pred             cHHHHHHHHhc-CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHHHcC
Q 037779          209 PYDLVMQTKQL-GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAVTNY  275 (310)
Q Consensus       209 ~~~l~~~i~~~-~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~~~~  275 (310)
                      .+++++.+++. ..+||+++  .+-++.+...+++++||+.+     |.++-++.+....+.+.++..
T Consensus        58 G~~~~~~lr~~~~~~~ii~i--t~~~~~~~~~~a~~~Ga~dy-----l~KP~~~~~L~~~i~~~l~r~  118 (120)
T d1p2fa2          58 GYEICRMIKETRPETWVILL--TLLSDDESVLKGFEAGADDY-----VTKPFNPEILLARVKRFLERE  118 (120)
T ss_dssp             HHHHHHHHHHHCTTSEEEEE--ESCCSHHHHHHHHHHTCSEE-----EESSCCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHhhcCCCCcEEEE--ecCCCHHHHHHHHHCCCCEE-----EECCCCHHHHHHHHHHHHHHc
Confidence            36677777664 56888755  56668999999999999986     456667777777666666543

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

Probab=80.82  E-value=1.7  Score=37.59  Aligned_cols=71  Identities=20%  Similarity=0.128  Sum_probs=49.6

Q ss_pred             HHHHHHHHcCCcEEEecc--cccchhhhcCCCCCCCChHHHHHHHhhcCcceEeeccccchHHHHHHHHcC-CCeeee
Q 037779           46 EQARIAEEAGACAVMALE--RVPADIRAQGGVARMSDPQLIKQIKSSVTIPVMAKARIGHFVEAQILEAIG-VDYVDE  120 (310)
Q Consensus        46 ~~a~~~~~~Ga~~I~~l~--~~~~d~r~~~G~~~~~~~~~i~~i~~~~~lPv~~kd~i~~~~~~~~~~~aG-ad~v~~  120 (310)
                      ++++.+.++|++.+....  ....+.....|    ......+.+++.+++||++...+.+.+.++.+.+.| +|.|-.
T Consensus       232 ~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~----~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~  305 (337)
T d1z41a1         232 GFAKWMKEQGVDLIDCSSGALVHADINVFPG----YQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFI  305 (337)
T ss_dssp             HHHHHHHHTTCCEEEEECCCSSCCCCCCCTT----TTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEE
T ss_pred             HHHHHHHHcCCcccccccccccccccccCCc----ccHHHHHHHHHhcCceEEEeCCcCCHHHHHHHHHCCCcceehh
Confidence            679999999999874321  11111111112    236778899999999999988887778888888877 899863

>d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC, N-terminal domain {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: NeuB-like
domain: Capsule biosynthesis protein SiaC, N-terminal domain
species: Neisseria meningitidis [TaxId: 487]

Probab=80.61  E-value=9.7  Score=31.56  Aligned_cols=82  Identities=11%  Similarity=0.166  Sum_probs=56.9

Q ss_pred             CCCCcEEeecCCHHHHHHHHHhCCCEEEEecCCCCCchHHHHHHHHHhhcceecccccCchhHHhhhccCCCcHHHHHHH
Q 037779          137 NFRVPFVCGCRNLGESLRRIREGAAMIRTKGEAGTGNIVEAVRHVRSVMGDIRVLRNMDDDEVFTFAKNIAAPYDLVMQT  216 (310)
Q Consensus       137 ~~~l~v~~~v~t~~ea~~a~~~Gad~I~v~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~l~~~i  216 (310)
                      ..++.+++++.+.+.+..+.+.|++++++...                                    + ...+.+++.+
T Consensus       101 ~~~i~~~~s~fd~~s~~~~~~~~~~~~KIaS~------------------------------------d-~~n~~Li~~i  143 (280)
T d2zdra2         101 SKGMIFISTPFSRAAALRLQRMDIPAYKIGSG------------------------------------E-CNNYPLIKLV  143 (280)
T ss_dssp             HTTCEEEEEECSHHHHHHHHHHTCSCEEECGG------------------------------------G-TTCHHHHHHH
T ss_pred             hcCCccccccchhhcccccccccccceeccch------------------------------------h-ccccHhhhhh
Confidence            35788999999988888888999999888521                                    0 1246678887


Q ss_pred             HhcCCCCEEEEccCCCCCHHHHHHHHH----cCCCEEEE-ccccccC
Q 037779          217 KQLGRLPVVHFAAGGVATPADAAMMMQ----LGCDGVFV-GSGVFKS  258 (310)
Q Consensus       217 ~~~~~iPVv~ia~GGI~t~~di~~~~~----~GadgV~V-Gsai~~~  258 (310)
                      .+ ...||+ +..|| .+.+++.++..    .|.+-+++ +..-|.+
T Consensus       144 ~k-~~kpii-iStG~-s~~~EI~~av~~~~~~~~~~~llhc~s~YPt  187 (280)
T d2zdra2         144 AS-FGKPII-LSTGM-NSIESIKKSVEIIREAGVPYALLHCTNIYPT  187 (280)
T ss_dssp             HT-TCSCEE-EECTT-CCHHHHHHHHHHHHHHTCCEEEEECCCCSSC
T ss_pred             hh-ccCcee-ecccc-cchhHhhhhhhhhhhccccceEEEeeccCcc
Confidence            66 367986 45555 68888887775    47775555 4444443

>d1dcfa_ c.23.1.2 (A:) Receiver domain of the ethylene receptor {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: Receiver domain of the ethylene receptor
domain: Receiver domain of the ethylene receptor
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.48  E-value=7.2  Score=28.37  Aligned_cols=56  Identities=18%  Similarity=0.302  Sum_probs=34.3

Q ss_pred             HHHHHHHHhc------CCCCEEEEccCCCCCHHHHHHHHHcCCCEEEEccccccCCCHHHHHHHHHHHH
Q 037779          210 YDLVMQTKQL------GRLPVVHFAAGGVATPADAAMMMQLGCDGVFVGSGVFKSGDPVRRARAIVQAV  272 (310)
Q Consensus       210 ~~l~~~i~~~------~~iPVv~ia~GGI~t~~di~~~~~~GadgV~VGsai~~~~dp~~~~~~~~~~~  272 (310)
                      +++++.+++.      ..+||+++  .|-.+.++..+++++|+++++     .++-++....+.+.+.+
T Consensus        66 ~el~~~ir~~~~~~~~~~~~ii~l--T~~~~~~~~~~~~~~G~~~~l-----~KP~~~~~L~~~l~~~l  127 (134)
T d1dcfa_          66 YQIALRIHEKFTKQRHQRPLLVAL--SGNTDKSTKEKCMSFGLDGVL-----LKPVSLDNIRDVLSDLL  127 (134)
T ss_dssp             THHHHHHHHHHC-CCSCCCEEEEE--ESCCSHHHHHHHHHTTCCEEE-----ESSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccCCCCeEEEE--eCCCCHHHHHHHHHcCCCEEE-----ECCCCHHHHHHHHHHHh
Confidence            5556666431      23566543  444568899999999999985     46555555444444443