Citrus Sinensis ID: 038122

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130
Protein Sequence
TEEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQREGNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC
Secondary Structure (PSIPRED)
cHHHHHcccccEEEEccccccccccccccccccccccccHHHHHHccccccHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEcccHHHHHHHHccccHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHHcccccEEEEcccccccccccccEEEEEccccccccHHHHHHccccccHHHHHHHHHHHcccHHHHHHcccHHHccccccccEEEEEEcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
TEEALINGEIDIAVHsmkdvptylldktilpcnlqreGNVQARLRKLNEGVIQATLSALAGlkclnmtenvtnilpiDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFlgtldgsc
Flexible Loop (DISEMBL)
teealingeidiavhsmkDVPTYLLDKTILPCNLQREGNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC
Low Complexity Region (SEG)
TEEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQREGNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC
Disordered region (IsUnstruct)
****LINGEIDIAVHSMKDVPTYLLDKTILPCNLQREGNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGT*****
Disordered Region (DISOPRED)
TEEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQREGNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC
Disordered Region (DISEMBL)
TEEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQREGNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC
Disordered Region (DISPRO)
TEEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQREGNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
TEEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQREGNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	130	2.2.26 [Sep-21-2011]
Q43082	369	Porphobilinogen deaminase	N/A	no	0.992	0.349	0.593	6e-49
Q43316	382	Porphobilinogen deaminase	yes	no	0.992	0.337	0.559	1e-44
Q6H6D2	358	Porphobilinogen deaminase	yes	no	0.992	0.360	0.511	3e-40
Q1QQP5	316	Porphobilinogen deaminase	yes	no	0.992	0.408	0.380	2e-23
Q3SVF3	316	Porphobilinogen deaminase	yes	no	0.992	0.408	0.375	4e-23
Q98EI7	308	Porphobilinogen deaminase	yes	no	0.992	0.418	0.386	7e-23
Q0BX92	321	Porphobilinogen deaminase	yes	no	0.984	0.398	0.372	8e-21
Q747I1	318	Porphobilinogen deaminase	yes	no	0.992	0.405	0.354	9e-21
B1I4L8	309	Porphobilinogen deaminase	yes	no	0.992	0.417	0.363	2e-20
Q8YJB0	314	Porphobilinogen deaminase	yes	no	0.992	0.410	0.357	4e-20

>sp|Q43082|HEM3_PEA Porphobilinogen deaminase, chloroplastic OS=Pisum sativum GN=HEMC PE=1 SV=1

 Score =  192 bits (488), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 105/177 (59%), Positives = 115/177 (64%), Gaps = 48/177 (27%)

Query: 2   EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
           +EALING+IDIAVHSMKDVPTYL ++TILPCNL RE                        
Sbjct: 127 DEALINGDIDIAVHSMKDVPTYLPEETILPCNLPREDVRDAFISLSAASLADLPAGSVIG 186

Query: 38  ------------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTN 73
                                   GNVQ RLRKL+EGV++ATL ALAGLK LNMTENVT+
Sbjct: 187 TASLRRKSQILHRYPSLTVQDNFRGNVQTRLRKLSEGVVKATLLALAGLKRLNMTENVTS 246

Query: 74  ILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
            L IDDML AVAQGAIGIAC SND KMA+YL SLNHEETR A+ CERAFL TLDGSC
Sbjct: 247 TLSIDDMLPAVAQGAIGIACRSNDDKMAEYLASLNHEETRLAISCERAFLTTLDGSC 303

Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
Pisum sativum (taxid: 3888)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 6EC: 1

>sp|Q43316|HEM3_ARATH Porphobilinogen deaminase, chloroplastic OS=Arabidopsis thaliana GN=HEMC PE=1 SV=1

 Score =  177 bits (450), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 99/177 (55%), Positives = 109/177 (61%), Gaps = 48/177 (27%)

Query: 2   EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
           +EALING IDIAVHSMKDVPTYL +KTILPCNL RE                        
Sbjct: 140 DEALINGHIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFICLTAATLAELPAGSVVG 199

Query: 38  ------------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTN 73
                                   GNVQ RL KL  G +QATL ALAGLK L+MTENV +
Sbjct: 200 TASLRRKSQILHKYPALHVEENFRGNVQTRLSKLQGGKVQATLLALAGLKRLSMTENVAS 259

Query: 74  ILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
           IL +D+ML AVAQGAIGIAC ++D KMA YL SLNHEETR A+ CERAFL TLDGSC
Sbjct: 260 ILSLDEMLPAVAQGAIGIACRTDDDKMATYLASLNHEETRLAISCERAFLETLDGSC 316

Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|Q6H6D2|HEM3_ORYSJ Porphobilinogen deaminase, chloroplastic OS=Oryza sativa subsp. japonica GN=HEMC PE=2 SV=1

 Score =  163 bits (412), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 90/176 (51%), Positives = 102/176 (57%), Gaps = 47/176 (26%)

Query: 2   EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
           ++AL+ G IDIAVHSMKDVPTYL + TILPCNL RE                        
Sbjct: 115 DDALLQGRIDIAVHSMKDVPTYLPEGTILPCNLPREDVRDAFICLTASSLAELPAGSVVG 174

Query: 38  -----------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNI 74
                                  GNVQ RLRKL EG + ATL ALAGLK LNM E  T++
Sbjct: 175 SASLRRQSQILYKYPSLKVVNFRGNVQTRLRKLKEGDVHATLLALAGLKRLNMAETATSV 234

Query: 75  LPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
           L +D+ML AVAQGAIGIAC S+D  M  YL SLNHE+TR AV CER FL  LDG+C
Sbjct: 235 LSVDEMLPAVAQGAIGIACRSSDDTMMNYLSSLNHEDTRLAVACEREFLSVLDGNC 290

Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|Q1QQP5|HEM3_NITHX Porphobilinogen deaminase OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=hemC PE=3 SV=1

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/176 (38%), Positives = 82/176 (46%), Gaps = 47/176 (26%)

Query: 2   EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
           EEAL+ G ID AVHS KDVPT+L D T LP  L RE                        
Sbjct: 74  EEALLAGSIDFAVHSSKDVPTFLPDATWLPAFLPREDVRDAFISPRAASLNDLPAGSIVG 133

Query: 38  -----------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNI 74
                                  GNV+ RLRKL  G   ATL ALAGL  L + +  T I
Sbjct: 134 TASLRRQAMVLRLRPDLKVSVIRGNVETRLRKLVAGEADATLLALAGLNRLGLQDRATRI 193

Query: 75  LPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
           L  D+ L AV QGAI I    +D ++  ++ ++   ET  A+  ER+FL  LDGSC
Sbjct: 194 LETDEFLPAVGQGAIAIESRRDDDRINAFVKAIGDSETEVALSAERSFLALLDGSC 249

Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.

Nitrobacter hamburgensis (strain X14 / DSM 10229) (taxid: 323097)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|Q3SVF3|HEM3_NITWN Porphobilinogen deaminase OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=hemC PE=3 SV=1

 Score =  106 bits (264), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 66/176 (37%), Positives = 83/176 (47%), Gaps = 47/176 (26%)

Query: 2   EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
           EEAL+ G ID AVHS KDVPT+L D T LP  L RE                        
Sbjct: 74  EEALLAGTIDFAVHSSKDVPTFLPDATWLPAFLPREDVRDVFISPHAGSLNDLPAGATVG 133

Query: 38  -----------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNI 74
                                  GNV+ RLRK++ G   ATL ALAGL  L + +  T I
Sbjct: 134 TASLRRQAMVLKLRPDLKVNSLRGNVETRLRKISVGEADATLLALAGLNRLGLQDKATRI 193

Query: 75  LPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
           L  D+ L AV QGAI I    +D ++  ++ ++   ET  A+  ER+FL  LDGSC
Sbjct: 194 LETDEFLPAVGQGAIAIESRRDDDRINAFVKAIGDPETEVALSAERSFLALLDGSC 249

Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.

Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) (taxid: 323098)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|Q98EI7|HEM3_RHILO Porphobilinogen deaminase OS=Rhizobium loti (strain MAFF303099) GN=hemC PE=3 SV=1

 Score =  105 bits (262), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 68/176 (38%), Positives = 83/176 (47%), Gaps = 47/176 (26%)

Query: 2   EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
           EEAL+ G IDIAVHS KD+PT L D   L   L RE                        
Sbjct: 68  EEALLAGAIDIAVHSSKDMPTQLPDGLELSAFLPREDARDAFVGKAAKTIADLLRGAKVG 127

Query: 38  -----------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNI 74
                                  GNVQ RLRKL+EGV   T+ A AGLK L +    T++
Sbjct: 128 SSSLRRQALIRRMRPDLDVVMFRGNVQTRLRKLDEGVAAGTILAYAGLKRLGLEHVATDL 187

Query: 75  LPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
           +P+D    A  QGAIGI     D+ + K L +++   T QA+ CERAFL  LDGSC
Sbjct: 188 MPLDIFPPAPGQGAIGIETRIGDRAVEKMLVAIHDVPTGQALACERAFLAALDGSC 243

Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.

Rhizobium loti (strain MAFF303099) (taxid: 266835)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|Q0BX92|HEM3_HYPNA Porphobilinogen deaminase OS=Hyphomonas neptunium (strain ATCC 15444) GN=hemC PE=3 SV=1

 Score = 99.0 bits (245), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 66/177 (37%), Positives = 89/177 (50%), Gaps = 49/177 (27%)

Query: 2   EEALINGEIDIAVHSMKDVPTYLLDKTI------------------------LP------ 31
           ++AL  GE+D+AVHS+KDVP+ L    I                        LP      
Sbjct: 75  DDALSRGELDLAVHSLKDVPSVLPPGQIFAAFPKREDPRDGFLSHGAKSIQDLPEGATLG 134

Query: 32  -CNLQRE----------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNI 74
             +L+RE                GNV  R+RKL EG+  AT  A+AGL  L ++E  T I
Sbjct: 135 TASLRREAQALALRPDLKVVTFRGNVATRMRKLEEGLADATFLAMAGLTRLGLSEVATPI 194

Query: 75  LPIDDMLLAVAQGAIGIACTSN-DKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
            P++DML A  QG IG+    + D ++ + LG L+HE +R A + ERAFL  LDGSC
Sbjct: 195 -PLEDMLPAAGQGIIGVVTRDDVDTELLEILGQLSHEPSRVAAIAERAFLEKLDGSC 250

Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.

Hyphomonas neptunium (strain ATCC 15444) (taxid: 228405)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|Q747I1|HEM3_GEOSL Porphobilinogen deaminase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=hemC PE=3 SV=1

 Score = 98.6 bits (244), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 62/175 (35%), Positives = 82/175 (46%), Gaps = 46/175 (26%)

Query: 2   EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
           EEA++ GEIDIAVHSMKDVPT   +   L C  +RE                        
Sbjct: 67  EEAMLRGEIDIAVHSMKDVPTEFPEGLGLVCITEREDPRDAFISNGVTFANLPQGAKIGT 126

Query: 38  ----------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNIL 75
                                 GNV+ R+RKL E  + A + A AGLK L  T+ VT  L
Sbjct: 127 SALRRQAQLLKVRPDLEMVIIRGNVETRIRKLTEDKLDAVILAAAGLKRLGFTDVVTEYL 186

Query: 76  PIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
           P+D  L A+ QGA+G+ C  +D+ + + +   NH +T  AV  ERA L   +G C
Sbjct: 187 PVDLSLPAIGQGALGLECRLDDQAVRETIDFFNHPDTAHAVRAERALLWRCEGGC 241

Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.

Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) (taxid: 243231)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|B1I4L8|HEM3_DESAP Porphobilinogen deaminase OS=Desulforudis audaxviator (strain MP104C) GN=hemC PE=3 SV=1

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/176 (36%), Positives = 90/176 (51%), Gaps = 47/176 (26%)

Query: 2   EEALINGEIDIAVHSMKDVPTYLLDKTI------------------------LPC----- 32
           E+AL++ EID+AVHSMKD+PT L +  +                        LP      
Sbjct: 66  EQALLHREIDLAVHSMKDLPTGLPEGLVIGAVSVREYPGDVFISRGGERLEELPAGAVLG 125

Query: 33  --NLQR----------------EGNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNI 74
             +L+R                 GNVQ RLRKL+EGV+ A + A AGL  L +TE VT+ 
Sbjct: 126 TSSLRRTAQLLAYRPDLQVIPVRGNVQTRLRKLDEGVVDALVLAWAGLFRLGLTERVTHR 185

Query: 75  LPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
           +P+   L AV QGA+GI   ++D ++ + L +++H  TR AV  ER  L  L+G C
Sbjct: 186 IPVAMCLPAVGQGALGIEARADDAEILEMLRTIDHAPTRAAVQAERTLLRRLEGGC 241

Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.

Desulforudis audaxviator (strain MP104C) (taxid: 477974)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 1

>sp|Q8YJB0|HEM3_BRUME Porphobilinogen deaminase OS=Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) GN=hemC PE=3 SV=2

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/176 (35%), Positives = 81/176 (46%), Gaps = 47/176 (26%)

Query: 2   EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
           E+AL +G IDIAVHS KD+PT L +   L   L+RE                        
Sbjct: 74  EQALKDGRIDIAVHSTKDMPTALPEGLHLSVFLEREDPRDAFIGRSARRFMDLPQGATVG 133

Query: 38  -----------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNI 74
                                  GNV  RLRKL+ G +  T  A AGL+ L + + +T++
Sbjct: 134 SSSLRRQALIRRLRPDIEVVMYRGNVDTRLRKLDAGEVDGTFLACAGLRRLGLADVITDV 193

Query: 75  LPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
           L       A  QGAIGI     D+++   L  L H ET+ A+ CERAFLG LDGSC
Sbjct: 194 LDPSVFPPAPGQGAIGIESRIGDERIDVLLAPLAHRETQIALACERAFLGALDGSC 249

Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.

Brucella melitensis biotype 1 (strain 16M / ATCC 23456 / NCTC 10094) (taxid: 224914)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
255558669	372	porphobilinogen deaminase, putative [Ric	0.992	0.346	0.621	8e-50
224094087	363	predicted protein [Populus trichocarpa]	0.992	0.355	0.610	2e-49
359807499	356	uncharacterized protein LOC100779132 [Gl	0.992	0.362	0.610	2e-48
224081346	363	predicted protein [Populus trichocarpa]	0.992	0.355	0.604	3e-48
363807442	350	uncharacterized protein LOC100812733 [Gl	0.992	0.368	0.604	5e-48
296080867	328	unnamed protein product [Vitis vinifera]	0.992	0.393	0.610	7e-48
357474093	369	Porphobilinogen deaminase [Medicago trun	0.992	0.349	0.598	8e-48
356538495	350	PREDICTED: porphobilinogen deaminase, ch	0.992	0.368	0.598	1e-47
2495180	369	RecName: Full=Porphobilinogen deaminase,	0.992	0.349	0.593	4e-47
255634492	350	unknown [Glycine max]	0.992	0.368	0.593	7e-47

>gi|255558669|ref|XP_002520359.1| porphobilinogen deaminase, putative [Ricinus communis] gi|223540457|gb|EEF42025.1| porphobilinogen deaminase, putative [Ricinus communis]

 Score =  201 bits (511), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 110/177 (62%), Positives = 115/177 (64%), Gaps = 48/177 (27%)

Query: 2   EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
           +EALINGEIDIAVHSMKDVPTYL +KTILPCNL RE                        
Sbjct: 130 DEALINGEIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFISLSASSLAELPSGSVIG 189

Query: 38  ------------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTN 73
                                   GNVQ RLRKLNEGV+QATL ALAGLK LNMTENVT+
Sbjct: 190 TASLRRKSQILHRYPSLSVLENFRGNVQTRLRKLNEGVVQATLLALAGLKRLNMTENVTS 249

Query: 74  ILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
           +L IDDML AVAQGAIGIAC SND KMA YL SLNHEETR AV CERAFL TLDGSC
Sbjct: 250 VLSIDDMLPAVAQGAIGIACRSNDDKMANYLASLNHEETRLAVACERAFLETLDGSC 306

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094087|ref|XP_002310073.1| predicted protein [Populus trichocarpa] gi|222852976|gb|EEE90523.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 108/177 (61%), Positives = 115/177 (64%), Gaps = 48/177 (27%)

Query: 2   EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
           +EALING+IDIAVHSMKDVPTYL +KTILPCNL RE                        
Sbjct: 121 DEALINGDIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFISLSAASLADLPAGSIIG 180

Query: 38  ------------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTN 73
                                   GNVQ RLRKLNEGV++ATL ALAGLK LNMTENVT+
Sbjct: 181 TASLRRKSQILHRYPSLSVEENFRGNVQTRLRKLNEGVVKATLLALAGLKRLNMTENVTS 240

Query: 74  ILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
           ILP+DDML AVAQGAIGIAC SND KM  YL SLNHEETR AV CERAFL TLDGSC
Sbjct: 241 ILPLDDMLPAVAQGAIGIACRSNDDKMVNYLASLNHEETRLAVACERAFLETLDGSC 297

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807499|ref|NP_001240888.1| uncharacterized protein LOC100779132 [Glycine max] gi|255640018|gb|ACU20300.1| unknown [Glycine max]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 108/177 (61%), Positives = 116/177 (65%), Gaps = 48/177 (27%)

Query: 2   EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
           +EAL+N EIDIAVHSMKDVPTYL DKTILPCNL RE                        
Sbjct: 114 DEALLNSEIDIAVHSMKDVPTYLPDKTILPCNLPREDVRDAFISLTAASLADLPPASVIG 173

Query: 38  ------------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTN 73
                                   GNVQ RLRKLNEGV+QATL ALAGLK L+MTENVT+
Sbjct: 174 TASLRRKSQILHRYPSLNVQENFRGNVQTRLRKLNEGVVQATLLALAGLKRLSMTENVTS 233

Query: 74  ILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
           IL IDDML AVAQGAIGIAC S+D KMA+Y+ SLNHEETR AVVCERAFL TLDGSC
Sbjct: 234 ILSIDDMLPAVAQGAIGIACRSDDDKMAEYIDSLNHEETRLAVVCERAFLQTLDGSC 290

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224081346|ref|XP_002306378.1| predicted protein [Populus trichocarpa] gi|222855827|gb|EEE93374.1| predicted protein [Populus trichocarpa]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 107/177 (60%), Positives = 114/177 (64%), Gaps = 48/177 (27%)

Query: 2   EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
           +EALING+IDIAVHSMKDVPTYL + TILPCNL RE                        
Sbjct: 121 DEALINGDIDIAVHSMKDVPTYLPEMTILPCNLPREDVRDAFISMSATSLADLPAGSIVG 180

Query: 38  ------------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTN 73
                                   GNVQ RLRKLNEGV++ATL ALAGLK LNMTENVT+
Sbjct: 181 TASLRRKSQILHRFPSLSVEENFRGNVQTRLRKLNEGVVKATLLALAGLKRLNMTENVTS 240

Query: 74  ILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
           ILPIDDML AVAQGAIGIAC  +D KMA YL SLNHEETR AV CERAFL TLDGSC
Sbjct: 241 ILPIDDMLPAVAQGAIGIACRDSDDKMANYLASLNHEETRLAVACERAFLETLDGSC 297

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807442|ref|NP_001242644.1| uncharacterized protein LOC100812733 [Glycine max] gi|255635113|gb|ACU17914.1| unknown [Glycine max]

 Score =  195 bits (496), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 107/177 (60%), Positives = 115/177 (64%), Gaps = 48/177 (27%)

Query: 2   EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
           +EALING+IDIAVHSMKDVPTYL DKTILPCNL RE                        
Sbjct: 108 DEALINGDIDIAVHSMKDVPTYLPDKTILPCNLPREDVRDAFISLSAASLADLPSGSIVG 167

Query: 38  ------------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTN 73
                                   GNVQ RLRKL+EG++QATL ALAGLK LNMTENVT+
Sbjct: 168 TASLRRKSQILHRYPSLNVEENFRGNVQTRLRKLSEGIVQATLLALAGLKRLNMTENVTS 227

Query: 74  ILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
           IL IDDML AVAQGAIGIAC SND KMA+YL SLNHEETR AV CERAFL  L+GSC
Sbjct: 228 ILSIDDMLPAVAQGAIGIACRSNDDKMAEYLASLNHEETRLAVSCERAFLEKLEGSC 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296080867|emb|CBI18797.3| unnamed protein product [Vitis vinifera]

 Score =  194 bits (494), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 108/177 (61%), Positives = 114/177 (64%), Gaps = 48/177 (27%)

Query: 2   EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
           +EAL+NG+IDIAVHSMKDVPTYL DKTILPCNL RE                        
Sbjct: 86  DEALLNGDIDIAVHSMKDVPTYLPDKTILPCNLPREDVRDAFISLTAASLSELPAGSIVG 145

Query: 38  ------------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTN 73
                                   GNVQ RLRKLNEGV+QATL ALAGLK LNMTENVT+
Sbjct: 146 TASLRRKSQLLHRYKSLNVLENFRGNVQTRLRKLNEGVVQATLLALAGLKRLNMTENVTS 205

Query: 74  ILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
           IL ID+ML AVAQGAIGIAC SND KMA YL SLNHE TR AV CERAFL TLDGSC
Sbjct: 206 ILSIDEMLPAVAQGAIGIACRSNDDKMANYLASLNHEVTRLAVACERAFLETLDGSC 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474093|ref|XP_003607331.1| Porphobilinogen deaminase [Medicago truncatula] gi|355508386|gb|AES89528.1| Porphobilinogen deaminase [Medicago truncatula]

 Score =  194 bits (494), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 106/177 (59%), Positives = 115/177 (64%), Gaps = 48/177 (27%)

Query: 2   EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
           +EALING+IDIAVHSMKDVPTYL +KTILPCNL RE                        
Sbjct: 127 DEALINGDIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFISLSAASLADLPAGSVIG 186

Query: 38  ------------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTN 73
                                   GNVQ RLRKL+EGV++ATL ALAGLK LNMTENVT+
Sbjct: 187 TASLRRKSQILHRYPSLSVQDNFRGNVQTRLRKLSEGVVKATLLALAGLKRLNMTENVTS 246

Query: 74  ILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
            L IDDML AVAQGAIGIAC SND KMA+YL SLNHEETR A+ CERAFL TLDGSC
Sbjct: 247 TLSIDDMLPAVAQGAIGIACRSNDDKMAEYLASLNHEETRLAISCERAFLTTLDGSC 303

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538495|ref|XP_003537739.1| PREDICTED: porphobilinogen deaminase, chloroplastic-like [Glycine max]

 Score =  194 bits (493), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 106/177 (59%), Positives = 115/177 (64%), Gaps = 48/177 (27%)

Query: 2   EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
           +EALING+IDIAVHSMKDVPTYL DKTILPCNL RE                        
Sbjct: 108 DEALINGDIDIAVHSMKDVPTYLPDKTILPCNLPREDVRDAFISLSAASLADLPSGSVVG 167

Query: 38  ------------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTN 73
                                   GNVQ RLRKL+EG++QATL ALAGLK LNMTENV++
Sbjct: 168 TASLRRKSQILHRYPSLNVEENFRGNVQTRLRKLSEGIVQATLLALAGLKRLNMTENVSS 227

Query: 74  ILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
           IL IDDML AVAQGAIGIAC SND KMA+YL SLNHEETR AV CERAFL  L+GSC
Sbjct: 228 ILSIDDMLPAVAQGAIGIACRSNDDKMAEYLASLNHEETRLAVSCERAFLEKLEGSC 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2495180|sp|Q43082.1|HEM3_PEA RecName: Full=Porphobilinogen deaminase, chloroplastic; Short=PBG; AltName: Full=Hydroxymethylbilane synthase; Short=HMBS; AltName: Full=Pre-uroporphyrinogen synthase; Flags: Precursor gi|313724|emb|CAA51820.1| hydroxymethylbilane synthase [Pisum sativum]

 Score =  192 bits (488), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 105/177 (59%), Positives = 115/177 (64%), Gaps = 48/177 (27%)

Query: 2   EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
           +EALING+IDIAVHSMKDVPTYL ++TILPCNL RE                        
Sbjct: 127 DEALINGDIDIAVHSMKDVPTYLPEETILPCNLPREDVRDAFISLSAASLADLPAGSVIG 186

Query: 38  ------------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTN 73
                                   GNVQ RLRKL+EGV++ATL ALAGLK LNMTENVT+
Sbjct: 187 TASLRRKSQILHRYPSLTVQDNFRGNVQTRLRKLSEGVVKATLLALAGLKRLNMTENVTS 246

Query: 74  ILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
            L IDDML AVAQGAIGIAC SND KMA+YL SLNHEETR A+ CERAFL TLDGSC
Sbjct: 247 TLSIDDMLPAVAQGAIGIACRSNDDKMAEYLASLNHEETRLAISCERAFLTTLDGSC 303

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255634492|gb|ACU17610.1| unknown [Glycine max]

 Score =  191 bits (486), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 105/177 (59%), Positives = 114/177 (64%), Gaps = 48/177 (27%)

Query: 2   EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
           +EALING+ DIAVHSMKDVPTYL DKTILPCNL RE                        
Sbjct: 108 DEALINGDSDIAVHSMKDVPTYLPDKTILPCNLPREDVRDAFISLSAASLADLPSGSVVG 167

Query: 38  ------------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTN 73
                                   GNVQ RLRKL+EG++QATL ALAGLK LNMTENV++
Sbjct: 168 TASLRRKSQILHRYPSLNVEENFRGNVQTRLRKLSEGIVQATLLALAGLKRLNMTENVSS 227

Query: 74  ILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
           IL IDDML AVAQGAIGIAC SND KMA+YL SLNHEETR AV CERAFL  L+GSC
Sbjct: 228 ILSIDDMLPAVAQGAIGIACRSNDDKMAEYLASLNHEETRLAVSCERAFLEKLEGSC 284

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	130
TAIR|locus:2150758	382	HEMC "hydroxymethylbilane synt	0.715	0.243	0.731	4.1e-45
TIGR_CMR|SPO_3649	319	SPO_3649 "porphobilinogen deam	0.715	0.291	0.516	5.1e-19
TIGR_CMR|CHY_1208	311	CHY_1208 "porphobilinogen deam	0.715	0.299	0.365	8.5e-18
DICTYBASE|DDB_G0284697	325	hemC "porphobilinogen deaminas	0.715	0.286	0.326	1.7e-16
UNIPROTKB|P64336	309	hemC "Porphobilinogen deaminas	0.715	0.300	0.387	2.4e-16
UNIPROTKB|E2RTD6	362	HMBS "Uncharacterized protein"	0.715	0.256	0.382	9.7e-16
RGD|2801	361	Hmbs "hydroxymethylbilane synt	0.715	0.257	0.361	1.7e-15
UNIPROTKB|P08397	361	HMBS "Porphobilinogen deaminas	0.715	0.257	0.372	3.5e-15
UNIPROTKB|Q5M893	361	Hmbs "Hydroxymethylbilane synt	0.715	0.257	0.361	3.6e-15
UNIPROTKB|Q2KIN5	361	HMBS "Porphobilinogen deaminas	0.715	0.257	0.361	5.8e-15

TAIR|locus:2150758 HEMC "hydroxymethylbilane synthase" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
 Identities = 68/93 (73%), Positives = 76/93 (81%)

Query:    38 GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSND 97
             GNVQ RL KL  G +QATL ALAGLK L+MTENV +IL +D+ML AVAQGAIGIAC ++D
Sbjct:   224 GNVQTRLSKLQGGKVQATLLALAGLKRLSMTENVASILSLDEMLPAVAQGAIGIACRTDD 283

Query:    98 KKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
              KMA YL SLNHEETR A+ CERAFL TLDGSC
Sbjct:   284 DKMATYLASLNHEETRLAISCERAFLETLDGSC 316

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0018160 "peptidyl-pyrromethane cofactor linkage" evidence=IEA

GO:0033014 "tetrapyrrole biosynthetic process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0048046 "apoplast" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006744 "ubiquinone biosynthetic process" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA;TAS

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0004418 "hydroxymethylbilane synthase activity" evidence=IDA;IMP

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=TAS

TIGR_CMR|SPO_3649 SPO_3649 "porphobilinogen deaminase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 228 (85.3 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 48/93 (51%), Positives = 62/93 (66%)

Query:    38 GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSND 97
             GNVQ RLRKL+EGV + T  A+AG++ LNM E     +  DDML A+AQGAIGI    +D
Sbjct:   162 GNVQTRLRKLSEGVAECTFLAMAGIRRLNMAEVPATAISPDDMLPAIAQGAIGIERRMDD 221

Query:    98 KKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
              + A+ L +++H ET Q +  ERA L  LDGSC
Sbjct:   222 TRAAEMLTAIHHGETGQRLAAERALLAALDGSC 254

GO:0004418 "hydroxymethylbilane synthase activity" evidence=ISS

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=ISS

TIGR_CMR|CHY_1208 CHY_1208 "porphobilinogen deaminase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 157 (60.3 bits), Expect = 8.5e-18, Sum P(2) = 8.5e-18
 Identities = 34/93 (36%), Positives = 53/93 (56%)

Query:    38 GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSND 97
             GN+  R RK+ E  +   + A AG+K L   + +T +L  D  L AV QG+IG+   ++D
Sbjct:   149 GNLPTRFRKMEEMDLDGIILAYAGVKRLGYEDKITEMLSFDLCLPAVGQGSIGVEIRADD 208

Query:    98 KKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
               + + L  ++H  T +A+  ERAFL  L+G C
Sbjct:   209 TFIEELLKPIDHFATNRAIRAERAFLKRLEGGC 241

GO:0004418 "hydroxymethylbilane synthase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=ISS

DICTYBASE|DDB_G0284697 hemC "porphobilinogen deaminase" [Dictyostelium discoideum (taxid:44689)]

 Score = 143 (55.4 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
 Identities = 31/95 (32%), Positives = 50/95 (52%)

Query:    38 GNVQARLRKLNEGV--IQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTS 95
             GN+  R +KL +        + A+AGL+ + +T++++ I+P    L AV QG++GI C  
Sbjct:   159 GNLNTRFKKLEDDSNGYDGMILAVAGLERMELTDHISEIIPDSISLYAVGQGSLGIECKD 218

Query:    96 NDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
              D  +   L  L H E+      ER+ L  L+G C
Sbjct:   219 GDDFIQSILNPLIHRESMYCCEAERSMLRDLEGGC 253

GO:0033014 "tetrapyrrole biosynthetic process" evidence=IEA

GO:0018160 "peptidyl-pyrromethane cofactor linkage" evidence=IEA

GO:0004418 "hydroxymethylbilane synthase activity" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0006783 "heme biosynthetic process" evidence=IEA;ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0006782 "protoporphyrinogen IX biosynthetic process" evidence=IEA

UNIPROTKB|P64336 hemC "Porphobilinogen deaminase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 164 (62.8 bits), Expect = 2.4e-16, Sum P(2) = 2.4e-16
 Identities = 36/93 (38%), Positives = 51/93 (54%)

Query:    38 GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSND 97
             GN+  RL K++ G + A + A AGL  L   ++VT  L    ML A AQGA+ + C + D
Sbjct:   142 GNLDTRLNKVSSGDLDAIVVARAGLARLGRLDDVTETLEPVQMLPAPAQGALAVECRAGD 201

Query:    98 KKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
              ++   L  L+  +TR AV  ERA L  L+  C
Sbjct:   202 SRLVAVLAELDDADTRAAVTAERALLADLEAGC 234

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

UNIPROTKB|E2RTD6 HMBS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 152 (58.6 bits), Expect = 9.7e-16, Sum P(2) = 9.7e-16
 Identities = 36/94 (38%), Positives = 52/94 (55%)

Query:    38 GNVQARLRKLNE-GVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSN 96
             GN+  RLRKL+E     A + A AGL+ +     V  IL  ++ + AV QGA+G+   + 
Sbjct:   169 GNLNTRLRKLDELQEFSAIILAAAGLQRMGWQHRVGQILHPEECMYAVGQGALGVEVRAK 228

Query:    97 DKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
             D+ M   +G L+  ET    + ERAFL  L+G C
Sbjct:   229 DQDMLDLVGVLHDPETLLRCIAERAFLRHLEGGC 262

GO:0033014 "tetrapyrrole biosynthetic process" evidence=IEA

GO:0018160 "peptidyl-pyrromethane cofactor linkage" evidence=IEA

GO:0004418 "hydroxymethylbilane synthase activity" evidence=IEA

RGD|2801 Hmbs "hydroxymethylbilane synthase" [Rattus norvegicus (taxid:10116)]

 Score = 147 (56.8 bits), Expect = 1.7e-15, Sum P(2) = 1.7e-15
 Identities = 34/94 (36%), Positives = 53/94 (56%)

Query:    38 GNVQARLRKLNEGV-IQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSN 96
             GN+  RLRKL+E +   A + A+AGL+ +     V  IL  ++ + AV QGA+ +   + 
Sbjct:   168 GNLNTRLRKLDEQLEFSAIILAVAGLQRMGWQNRVGQILHPEECMYAVGQGALAVEVRAK 227

Query:    97 DKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
             D+ +   +G L+  ET    + ERAFL  L+G C
Sbjct:   228 DQDILDLVGVLHDPETLLRCIAERAFLRHLEGGC 261

GO:0001666 "response to hypoxia" evidence=IEP

GO:0004418 "hydroxymethylbilane synthase activity" evidence=ISO;IMP;IDA

GO:0004852 "uroporphyrinogen-III synthase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006782 "protoporphyrinogen IX biosynthetic process" evidence=IEA

GO:0009725 "response to hormone stimulus" evidence=IEP

GO:0009743 "response to carbohydrate stimulus" evidence=IEP

GO:0010038 "response to metal ion" evidence=IEP

GO:0010043 "response to zinc ion" evidence=IEP

GO:0010288 "response to lead ion" evidence=IEP

GO:0014070 "response to organic cyclic compound" evidence=IEP

GO:0018160 "peptidyl-pyrromethane cofactor linkage" evidence=IEA

GO:0030424 "axon" evidence=IDA

GO:0031100 "organ regeneration" evidence=IEP

GO:0031406 "carboxylic acid binding" evidence=IPI

GO:0031667 "response to nutrient levels" evidence=IEP

GO:0032025 "response to cobalt ion" evidence=IEP

GO:0032355 "response to estradiol stimulus" evidence=IEP

GO:0033014 "tetrapyrrole biosynthetic process" evidence=IMP;IDA

GO:0033273 "response to vitamin" evidence=IEP

GO:0042493 "response to drug" evidence=IEP

GO:0043176 "amine binding" evidence=IPI

GO:0043200 "response to amino acid stimulus" evidence=IEP

GO:0048708 "astrocyte differentiation" evidence=IEP

GO:0050662 "coenzyme binding" evidence=IPI

GO:0051597 "response to methylmercury" evidence=IEP

GO:0071236 "cellular response to antibiotic" evidence=IEP

GO:0071243 "cellular response to arsenic-containing substance" evidence=IEP

GO:0071284 "cellular response to lead ion" evidence=IEP

GO:0071345 "cellular response to cytokine stimulus" evidence=IEP

GO:0071418 "cellular response to amine stimulus" evidence=IEP

GO:0071549 "cellular response to dexamethasone stimulus" evidence=IEP

GO:0000793 "condensed chromosome" evidence=IDA

UNIPROTKB|P08397 HMBS "Porphobilinogen deaminase" [Homo sapiens (taxid:9606)]

 Score = 147 (56.8 bits), Expect = 3.5e-15, Sum P(2) = 3.5e-15
 Identities = 35/94 (37%), Positives = 52/94 (55%)

Query:    38 GNVQARLRKLNEGV-IQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSN 96
             GN+  RLRKL+E     A + A AGL+ +     V  IL  ++ + AV QGA+G+   + 
Sbjct:   168 GNLNTRLRKLDEQQEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAK 227

Query:    97 DKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
             D+ +   +G L+  ET    + ERAFL  L+G C
Sbjct:   228 DQDILDLVGVLHDPETLLRCIAERAFLRHLEGGC 261

GO:0018160 "peptidyl-pyrromethane cofactor linkage" evidence=IEA

GO:0006782 "protoporphyrinogen IX biosynthetic process" evidence=IEA

GO:0004418 "hydroxymethylbilane synthase activity" evidence=IDA

GO:0006783 "heme biosynthetic process" evidence=IC;TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006778 "porphyrin-containing compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|Q5M893 Hmbs "Hydroxymethylbilane synthase" [Rattus norvegicus (taxid:10116)]

 Score = 144 (55.7 bits), Expect = 3.6e-15, Sum P(2) = 3.6e-15
 Identities = 34/94 (36%), Positives = 52/94 (55%)

Query:    38 GNVQARLRKLNE-GVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSN 96
             GN+  RLRKL+E     A + A+AGL+ +     V  IL  ++ + AV QGA+ +   + 
Sbjct:   168 GNLNTRLRKLDELQEFSAIILAVAGLQRMGWQNRVGQILHPEECMYAVGQGALAVEVRAK 227

Query:    97 DKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
             D+ +   +G L+  ET    + ERAFL  L+G C
Sbjct:   228 DQDILDLVGVLHDPETLLRCIAERAFLRHLEGGC 261

GO:0004418 "hydroxymethylbilane synthase activity" evidence=IEA

GO:0018160 "peptidyl-pyrromethane cofactor linkage" evidence=IEA

GO:0033014 "tetrapyrrole biosynthetic process" evidence=IEA

UNIPROTKB|Q2KIN5 HMBS "Porphobilinogen deaminase" [Bos taurus (taxid:9913)]

 Score = 145 (56.1 bits), Expect = 5.8e-15, Sum P(2) = 5.8e-15
 Identities = 34/94 (36%), Positives = 52/94 (55%)

Query:    38 GNVQARLRKLNE-GVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSN 96
             GN+  RLRKL+E     A + A AGL+ +     V  IL  ++ + AV QGA+G+   + 
Sbjct:   168 GNLNTRLRKLDELQEFSAIILATAGLQRMGWQNRVGQILHPEECMYAVGQGALGVEVRAK 227

Query:    97 DKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
             D+ +   +G L+  ET    + ER+FL  L+G C
Sbjct:   228 DQDILDLVGVLHDPETLLRCIAERSFLRHLEGGC 261

GO:0006782 "protoporphyrinogen IX biosynthetic process" evidence=IEA

GO:0004418 "hydroxymethylbilane synthase activity" evidence=IEA

GO:0018160 "peptidyl-pyrromethane cofactor linkage" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.5.1.61	LOW CONFIDENCE prediction!
3rd Layer	2.5.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	130
PLN02691	351	PLN02691, PLN02691, porphobilinogen deaminase	4e-69
cd00494	292	cd00494, HMBS, Hydroxymethylbilane synthase (HMBS)	9e-48
PRK00072	295	PRK00072, hemC, porphobilinogen deaminase; Reviewe	7e-47
COG0181	307	COG0181, HemC, Porphobilinogen deaminase [Coenzyme	7e-38
TIGR00212	292	TIGR00212, hemC, porphobilinogen deaminase	1e-37
pfam01379	213	pfam01379, Porphobil_deam, Porphobilinogen deamina	4e-33

>gnl|CDD|215373 PLN02691, PLN02691, porphobilinogen deaminase

 Score =  210 bits (537), Expect = 4e-69
 Identities = 95/176 (53%), Positives = 108/176 (61%), Gaps = 47/176 (26%)

Query: 2   EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
           ++AL++G IDIAVHSMKDVPTYL + TILPCNL RE                        
Sbjct: 109 DDALLSGRIDIAVHSMKDVPTYLPEGTILPCNLPREDVRDAFISLKAKSLAELPAGSVVG 168

Query: 38  -----------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNI 74
                                  GNVQ RLRKL EGV+ ATL ALAGLK L+MTE+ T+I
Sbjct: 169 TASLRRQSQILHKYPHLKVVNFRGNVQTRLRKLQEGVVDATLLALAGLKRLDMTEHATSI 228

Query: 75  LPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
           L  D+ML AVAQGAIGIAC ++D KM +YL SLNHEETR AV CERAFL  LDGSC
Sbjct: 229 LSTDEMLPAVAQGAIGIACRTDDDKMLEYLASLNHEETRLAVACERAFLAALDGSC 284

Length = 351

>gnl|CDD|238276 cd00494, HMBS, Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12

 Score =  154 bits (392), Expect = 9e-48
 Identities = 67/176 (38%), Positives = 85/176 (48%), Gaps = 47/176 (26%)

Query: 2   EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
           EEAL+NGEID+AVHS+KDVPT L +  +L    +RE                        
Sbjct: 62  EEALLNGEIDLAVHSLKDVPTELPEGLVLGAIPKREDPRDALVSRNGSSLEDLPAGSVVG 121

Query: 38  -----------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNI 74
                                  GNV  RLRKL+EG   A + A AGLK L + + +T  
Sbjct: 122 TSSLRRQAQLKRKRPDLKFEPLRGNVDTRLRKLDEGEYDAIILAAAGLKRLGLEDRITQY 181

Query: 75  LPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
           L  + ML AV QGA+ I C   D+++   L  LNHEET   V+ ERAFL  L+G C
Sbjct: 182 LSPEVMLPAVGQGALAIECRKGDEELLALLKPLNHEETALCVLAERAFLRELEGGC 237

HMBS catalyzes the conversion of porphobilinogen (PBG) into hydroxymethylbilane (HMB). HMBS consists of three domains, and is believed to bind substrate through a hinge-bending motion of domains I and II. HMBS is found in all organisms except viruses. Length = 292

>gnl|CDD|234612 PRK00072, hemC, porphobilinogen deaminase; Reviewed

 Score =  152 bits (387), Expect = 7e-47
 Identities = 68/176 (38%), Positives = 88/176 (50%), Gaps = 47/176 (26%)

Query: 2   EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
           EEAL+ GEIDIAVHS+KDVPT L +  +L    +RE                        
Sbjct: 66  EEALLEGEIDIAVHSLKDVPTELPEGLVLAAIPEREDPRDALVSRDYKSLDDLPEGAVVG 125

Query: 38  -----------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNI 74
                                  GNV  RLRKL+EG   A + A AGLK L + + +T  
Sbjct: 126 TSSLRRQAQLLALRPDLEIKPLRGNVDTRLRKLDEGEYDAIILAAAGLKRLGLEDRITEY 185

Query: 75  LPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
           L  ++ML A  QGA+GI C ++D+++ + L  LNHEETR  V  ERAFL  L+G C
Sbjct: 186 LDPEEMLPAPGQGALGIECRADDEEILELLAPLNHEETRLRVTAERAFLRALEGGC 241

Length = 295

>gnl|CDD|223259 COG0181, HemC, Porphobilinogen deaminase [Coenzyme metabolism]

 Score =  129 bits (327), Expect = 7e-38
 Identities = 65/176 (36%), Positives = 84/176 (47%), Gaps = 47/176 (26%)

Query: 2   EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
           E+AL+ GEIDIAVHS+KDVPT L +  +L    +RE                        
Sbjct: 65  EQALLEGEIDIAVHSLKDVPTELPEGLVLAAIPEREDPRDALVSRDGYDLEELPEGAVVG 124

Query: 38  -----------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNI 74
                                  GNV  RLRKL+EG   A + A AGLK L +   +T I
Sbjct: 125 TSSLRRQAQLKALRPDLKIEPLRGNVDTRLRKLDEGEYDAIILAAAGLKRLGLENRITEI 184

Query: 75  LPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
           L  ++ L A  QGA+ I C + D+K+ + L  LN E+TR  V  ERAFL  L+G C
Sbjct: 185 LDPEEFLPAPGQGALAIECRAGDEKVLELLAELNDEDTRICVTAERAFLRELEGGC 240

Length = 307

>gnl|CDD|232876 TIGR00212, hemC, porphobilinogen deaminase

 Score =  128 bits (324), Expect = 1e-37
 Identities = 60/176 (34%), Positives = 82/176 (46%), Gaps = 47/176 (26%)

Query: 2   EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
           E+AL++GEID+AVHS+KDVPT L +   +   L+RE                        
Sbjct: 62  EQALLDGEIDLAVHSLKDVPTVLPEGLEIAAVLKREDPRDVLVSRKYLSLDSLPQGAKVG 121

Query: 38  -----------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNI 74
                                  GN+  RLRKL+EG   A + A AGLK L + + +T +
Sbjct: 122 TSSLRRKAQLKAIRPDLKIEPLRGNIDTRLRKLDEGEYDAIILAEAGLKRLGLEDVITEV 181

Query: 75  LPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
           L  + ML A  QGAI + C  +D ++ + L  +NH  TR     ERAFL  L G C
Sbjct: 182 LDPEVMLPAPGQGAIAVECRKDDTEIKEILKEINHPPTRVEATAERAFLKELGGGC 237

Alternate name hydroxymethylbilane synthase Biosynthesis of cofactors, prosthetic groups, and carriers: Heme and porphyrin [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 292

>gnl|CDD|216465 pfam01379, Porphobil_deam, Porphobilinogen deaminase, dipyromethane cofactor binding domain

 Score =  115 bits (289), Expect = 4e-33
 Identities = 57/150 (38%), Positives = 69/150 (46%), Gaps = 47/150 (31%)

Query: 2   EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
           EEAL+N EIDIAVHS+KDVPT L +  +L    +RE                        
Sbjct: 63  EEALLNNEIDIAVHSLKDVPTELPEGLVLGAIPKREDPRDALVSSNGKSLEDLPAGSVVG 122

Query: 38  -----------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNI 74
                                  GNV  RLRKL+EG   A + A AGLK L + + +T  
Sbjct: 123 TSSLRRSAQLKRKRPDLKFESLRGNVDTRLRKLDEGEYDAIILAAAGLKRLGLEDRITQS 182

Query: 75  LPIDDMLLAVAQGAIGIACTSNDKKMAKYL 104
           L  DDML AV QGA+GI C   DK+M   L
Sbjct: 183 LSPDDMLPAVGQGALGIECRKGDKEMLDLL 212

Length = 213

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	130
TIGR00212	292	hemC porphobilinogen deaminase. Biosynthesis of co	100.0
cd00494	292	HMBS Hydroxymethylbilane synthase (HMBS), also kno	100.0
COG0181	307	HemC Porphobilinogen deaminase [Coenzyme metabolis	100.0
PRK00072	295	hemC porphobilinogen deaminase; Reviewed	100.0
PLN02691	351	porphobilinogen deaminase	100.0
PF01379	215	Porphobil_deam: Porphobilinogen deaminase, dipyrom	100.0
KOG2892	320	consensus Porphobilinogen deaminase [Coenzyme tran	100.0
PRK01066	231	porphobilinogen deaminase; Provisional	100.0
PF14503	232	YhfZ_C: YhfZ C-terminal domain; PDB: 2OZZ_B.	82.76

>TIGR00212 hemC porphobilinogen deaminase

Probab=100.00  E-value=2.3e-56  Score=367.87  Aligned_cols=130  Identities=46%  Similarity=0.722  Sum_probs=128.2

Q ss_pred             ChHhhhcCCCcEEeecCCCCCCCCCCCeeeccccCCC-------------------------------------------
Q 038122            1 TEEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE-------------------------------------------   37 (130)
Q Consensus         1 ~e~aLl~g~iDiAVHSlKDlP~~~~~gl~i~a~l~R~-------------------------------------------   37 (130)
                      +|+||++|++|||||||||||+++|+||+++|+++|+                                           
T Consensus        61 le~aLl~g~iDiAVHSlKDlPt~lp~gl~i~av~~RedprD~lv~~~~~~l~~Lp~ga~VGTsS~RR~aql~~~rPdl~i  140 (292)
T TIGR00212        61 LEQALLDGEIDLAVHSLKDVPTVLPEGLEIAAVLKREDPRDVLVSRKYLSLDSLPQGAKVGTSSLRRKAQLKAIRPDLKI  140 (292)
T ss_pred             HHHHHhcCCCCEEEeccccCCCCCCCCcEEEEEecCCCCceEEEECCCCChhHCCCCCEeccCCHHHHHHHHHHCCCCEE
Confidence            5899999999999999999999999999999999998                                           


Q ss_pred             ----CcHHHHHHhhhcCCcceeehhHhhhhhcCCCCCceeecCCCCCccCcccchhhhhhccCcHHHHHHHhccCCHHHH
Q 038122           38 ----GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETR  113 (130)
Q Consensus        38 ----GNv~TRl~KL~~g~~daiiLA~AGL~RLg~~~~i~~~l~~~~~~pA~gQGaiaie~r~~d~~~~~ll~~i~~~~t~  113 (130)
                          |||+|||+||++|+|||||||+|||+|||+.++++++|++++|+||||||+||||||++|.++.++++.|||++|+
T Consensus       141 ~~iRGNV~TRL~KL~~g~~DaiiLA~AGL~RLgl~~~i~~~l~~~~~~PA~gQGalaIe~r~~d~~~~~ll~~l~d~~t~  220 (292)
T TIGR00212       141 EPLRGNIDTRLRKLDEGEYDAIILAEAGLKRLGLEDVITEVLDPEVMLPAPGQGAIAVECRKDDTEIKEILKEINHPPTR  220 (292)
T ss_pred             EECcCCHHHHHHHhcCCCCCEeehHhhHHHhCCCccccccccChhhcCCccccceEEEEEecCCHHHHHHHHHcCCHHHH
Confidence                9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHcCCCC
Q 038122          114 QAVVCERAFLGTLDGSC  130 (130)
Q Consensus       114 ~~~~aER~~l~~l~ggC  130 (130)
                      .|+.+||+||+.|+|||
T Consensus       221 ~~~~aER~~l~~L~ggC  237 (292)
T TIGR00212       221 VEATAERAFLKELGGGC  237 (292)
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            99999999999999999

Biosynthesis of cofactors, prosthetic groups, and carriers: Heme and porphyrin

>cd00494 HMBS Hydroxymethylbilane synthase (HMBS), also known as porphobilinogen deaminase (PBGD), is an intermediate enzyme in the biosynthetic pathway of tetrapyrrolic ring systems, such as heme, chlorophylls, and vitamin B12

Probab=100.00  E-value=4e-56  Score=366.42  Aligned_cols=130  Identities=52%  Similarity=0.765  Sum_probs=128.0

Q ss_pred             ChHhhhcCCCcEEeecCCCCCCCCCCCeeeccccCCC-------------------------------------------
Q 038122            1 TEEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE-------------------------------------------   37 (130)
Q Consensus         1 ~e~aLl~g~iDiAVHSlKDlP~~~~~gl~i~a~l~R~-------------------------------------------   37 (130)
                      +|+||++|++|||||||||||+++|+||+++|+++|+                                           
T Consensus        61 le~aLl~g~iDiAVHSlKDlP~~lp~gl~i~av~~RedprDvlv~~~~~~l~~Lp~ga~IGTsS~RR~aql~~~rpdl~~  140 (292)
T cd00494          61 LEEALLNGEIDLAVHSLKDVPTELPEGLVLGAIPKREDPRDALVSRNGSSLEDLPAGSVVGTSSLRRQAQLKRKRPDLKF  140 (292)
T ss_pred             HHHHHHcCCCCEEEeccccCCCCCCCCcEEEEEecCCCCceEEEECCCCChhHCCCCCEEecCCHHHHHHHHHHCCCCEE
Confidence            5899999999999999999999999999999999998                                           


Q ss_pred             ----CcHHHHHHhhhcCCcceeehhHhhhhhcCCCCCceeecCCCCCccCcccchhhhhhccCcHHHHHHHhccCCHHHH
Q 038122           38 ----GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETR  113 (130)
Q Consensus        38 ----GNv~TRl~KL~~g~~daiiLA~AGL~RLg~~~~i~~~l~~~~~~pA~gQGaiaie~r~~d~~~~~ll~~i~~~~t~  113 (130)
                          |||+|||+||++|+|||||||+|||+|||+.++++++|++++|+||||||+||||||++|+++.++++.|||++|+
T Consensus       141 ~~iRGNV~TRL~KL~~ge~DaiiLA~AGL~RLgl~~~~~~~l~~~~~~PA~gQGalave~r~~d~~~~~ll~~i~d~~t~  220 (292)
T cd00494         141 EPLRGNVDTRLRKLDEGEYDAIILAAAGLKRLGLEDRITQYLSPEVMLPAVGQGALAIECRKGDEELLALLKPLNHEETA  220 (292)
T ss_pred             EEcCCCHHHHHHHhcCCCCCEeehHhhHHHHcCCcccCccccCccccCCccccceEEEEEecCCHHHHHHHHHCCCHHHH
Confidence                9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHcCCCC
Q 038122          114 QAVVCERAFLGTLDGSC  130 (130)
Q Consensus       114 ~~~~aER~~l~~l~ggC  130 (130)
                      .++.+||+||+.|+|||
T Consensus       221 ~~~~aER~~L~~L~ggC  237 (292)
T cd00494         221 LCVLAERAFLRELEGGC  237 (292)
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            99999999999999999

HMBS catalyzes the conversion of porphobilinogen (PBG) into hydroxymethylbilane (HMB). HMBS consists of three domains, and is believed to bind substrate through a hinge-bending motion of domains I and II. HMBS is found in all organisms except viruses.

>COG0181 HemC Porphobilinogen deaminase [Coenzyme metabolism]

Probab=100.00  E-value=1.9e-56  Score=369.46  Aligned_cols=130  Identities=50%  Similarity=0.764  Sum_probs=128.4

Q ss_pred             ChHhhhcCCCcEEeecCCCCCCCCCCCeeeccccCCC-------------------------------------------
Q 038122            1 TEEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE-------------------------------------------   37 (130)
Q Consensus         1 ~e~aLl~g~iDiAVHSlKDlP~~~~~gl~i~a~l~R~-------------------------------------------   37 (130)
                      +|++|++|++|+|||||||||+++|+||+++|+++|+                                           
T Consensus        64 le~all~g~~DiAVHSlKDvP~~~p~gL~laai~~R~dprDalVs~~~~~l~~LP~Ga~VGTSSlRR~aql~~~rPdl~i  143 (307)
T COG0181          64 LEQALLEGEIDIAVHSLKDVPTELPEGLVLAAIPEREDPRDALVSRDGYDLEELPEGAVVGTSSLRRQAQLKALRPDLKI  143 (307)
T ss_pred             HHHHHHcCCCCEEEeecccCCccCCCCceEEEecCCCChhheEEECCCCchhhCCCCCccccchHHHHHHHHHhCCCCeE
Confidence            5899999999999999999999999999999999998                                           


Q ss_pred             ----CcHHHHHHhhhcCCcceeehhHhhhhhcCCCCCceeecCCCCCccCcccchhhhhhccCcHHHHHHHhccCCHHHH
Q 038122           38 ----GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETR  113 (130)
Q Consensus        38 ----GNv~TRl~KL~~g~~daiiLA~AGL~RLg~~~~i~~~l~~~~~~pA~gQGaiaie~r~~d~~~~~ll~~i~~~~t~  113 (130)
                          |||||||+||++|+|||||||+|||+|||+.++++++|+|+.|+|||||||||||||++|.++.++|+.|||.+|+
T Consensus       144 ~~lRGNVdTRL~KL~~g~yDAIILA~AGL~RLgl~~~~~~~l~p~~~~PA~gQGal~ie~R~~d~~~~~ll~~i~~~~t~  223 (307)
T COG0181         144 EPLRGNVDTRLRKLDEGEYDAIILAAAGLKRLGLENRITEILDPEEFLPAPGQGALAIECRAGDEKVLELLAELNDEDTR  223 (307)
T ss_pred             EeccCcHHHHHHHhhcCCccHHHHHHHHHHhcCCcccceeecChhhcCCCCCCceEEEEEecCcHHHHHHHHhccCchHH
Confidence                9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHcCCCC
Q 038122          114 QAVVCERAFLGTLDGSC  130 (130)
Q Consensus       114 ~~~~aER~~l~~l~ggC  130 (130)
                      .|+.+||+|++.|+|||
T Consensus       224 ~~v~aERa~l~~L~ggC  240 (307)
T COG0181         224 ICVTAERAFLRELEGGC  240 (307)
T ss_pred             HHHHHHHHHHHhhCCCC
Confidence            99999999999999999

>PRK00072 hemC porphobilinogen deaminase; Reviewed

Probab=100.00  E-value=5.6e-56  Score=365.95  Aligned_cols=130  Identities=52%  Similarity=0.803  Sum_probs=128.1

Q ss_pred             ChHhhhcCCCcEEeecCCCCCCCCCCCeeeccccCCC-------------------------------------------
Q 038122            1 TEEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE-------------------------------------------   37 (130)
Q Consensus         1 ~e~aLl~g~iDiAVHSlKDlP~~~~~gl~i~a~l~R~-------------------------------------------   37 (130)
                      +|+||++|+||||||||||||+++|+||+++|+++|+                                           
T Consensus        65 le~aLl~g~iDiAVHSlKDlP~~l~~gl~i~avl~R~dprDvlv~~~~~~l~~Lp~ga~IGTsS~RR~aql~~~~Pdl~~  144 (295)
T PRK00072         65 LEEALLEGEIDIAVHSLKDVPTELPEGLVLAAIPEREDPRDALVSRDYKSLDDLPEGAVVGTSSLRRQAQLLALRPDLEI  144 (295)
T ss_pred             HHHHHHcCCCCEEEeccCcCCCCCCCCcEEEEEecCCCCceEEEECCCCChhHCCCCCEEecCcHHHHHHHHHHCcCCEE
Confidence            5899999999999999999999999999999999998                                           


Q ss_pred             ----CcHHHHHHhhhcCCcceeehhHhhhhhcCCCCCceeecCCCCCccCcccchhhhhhccCcHHHHHHHhccCCHHHH
Q 038122           38 ----GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETR  113 (130)
Q Consensus        38 ----GNv~TRl~KL~~g~~daiiLA~AGL~RLg~~~~i~~~l~~~~~~pA~gQGaiaie~r~~d~~~~~ll~~i~~~~t~  113 (130)
                          |||+|||+||++|+|||||||+|||+|||+.++++++|++++|+||||||+||||||++|+++.++|++|||++|+
T Consensus       145 ~~iRGNV~TRL~KL~~g~~DaivLA~AGL~RLgl~~~~~~~l~~~~~~PA~gQGaiave~r~~d~~~~~~l~~i~d~~t~  224 (295)
T PRK00072        145 KPLRGNVDTRLRKLDEGEYDAIILAAAGLKRLGLEDRITEYLDPEEMLPAPGQGALGIECRADDEEILELLAPLNHEETR  224 (295)
T ss_pred             EECccCHHHHHHHhhCCCCCEeehHhhHHHHcCCccccceecChhhcCCcccccceeeeeecCCHHHHHHHHHcCCHHHH
Confidence                9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHcCCCC
Q 038122          114 QAVVCERAFLGTLDGSC  130 (130)
Q Consensus       114 ~~~~aER~~l~~l~ggC  130 (130)
                      .++.+||+||+.|+|||
T Consensus       225 ~~~~aER~~L~~L~ggC  241 (295)
T PRK00072        225 LRVTAERAFLRALEGGC  241 (295)
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            99999999999999999

>PLN02691 porphobilinogen deaminase

Probab=100.00  E-value=1.6e-55  Score=369.83  Aligned_cols=130  Identities=73%  Similarity=1.105  Sum_probs=128.3

Q ss_pred             ChHhhhcCCCcEEeecCCCCCCCCCCCeeeccccCCC-------------------------------------------
Q 038122            1 TEEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE-------------------------------------------   37 (130)
Q Consensus         1 ~e~aLl~g~iDiAVHSlKDlP~~~~~gl~i~a~l~R~-------------------------------------------   37 (130)
                      +|+||++|+||||||||||||+++|+||+|+|+++|+                                           
T Consensus       108 le~aLl~g~iDiAVHSlKDlP~~l~~gl~i~Avl~RedprDvLv~~~~~~L~~Lp~ga~IGTSS~RR~aql~~~rPdl~v  187 (351)
T PLN02691        108 IDDALLSGRIDIAVHSMKDVPTYLPEGTILPCNLPREDVRDAFISLKAKSLAELPAGSVVGTASLRRQSQILHKYPHLKV  187 (351)
T ss_pred             HHHHHHcCCCCEEEeccccCCCCCCCCcEEEEEcCCCCCceEEEECCCCChhHCCCCCEeccCcHHHHHHHHHHCCCCEE
Confidence            5899999999999999999999999999999999998                                           


Q ss_pred             ----CcHHHHHHhhhcCCcceeehhHhhhhhcCCCCCceeecCCCCCccCcccchhhhhhccCcHHHHHHHhccCCHHHH
Q 038122           38 ----GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETR  113 (130)
Q Consensus        38 ----GNv~TRl~KL~~g~~daiiLA~AGL~RLg~~~~i~~~l~~~~~~pA~gQGaiaie~r~~d~~~~~ll~~i~~~~t~  113 (130)
                          |||+|||+||++|+|||||||+|||+|||++++++++|++++|+||||||+||||||++|+++.++|+.|||++|+
T Consensus       188 ~~iRGNVdTRL~KL~~geyDaiILA~AGL~RLgl~~~i~~~l~~~~~~PA~gQGaLaVe~r~~d~~~~~ll~~ind~~T~  267 (351)
T PLN02691        188 VNFRGNVQTRLRKLQEGVVDATLLALAGLKRLDMTEHATSILSTDEMLPAVAQGAIGIACRTDDDKMLEYLASLNHEETR  267 (351)
T ss_pred             EeccCCHHHHHHHhcCCCCCeeehHHHHHHhCCCcccccEecchhhcCCccccceEEEEEecCCHHHHHHHHHCCCHHHH
Confidence                9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHcCCCC
Q 038122          114 QAVVCERAFLGTLDGSC  130 (130)
Q Consensus       114 ~~~~aER~~l~~l~ggC  130 (130)
                      .++.+||+||+.|+|||
T Consensus       268 ~~~~aER~~L~~L~GgC  284 (351)
T PLN02691        268 LAVACERAFLAALDGSC  284 (351)
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            99999999999999999

>PF01379 Porphobil_deam: Porphobilinogen deaminase, dipyromethane cofactor binding domain; InterPro: IPR022417 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []

Probab=100.00  E-value=3.4e-46  Score=296.52  Aligned_cols=105  Identities=47%  Similarity=0.750  Sum_probs=86.4

Q ss_pred             ChHhhhcCCCcEEeecCCCCCCCCCCCeeeccccCCC-------------------------------------------
Q 038122            1 TEEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE-------------------------------------------   37 (130)
Q Consensus         1 ~e~aLl~g~iDiAVHSlKDlP~~~~~gl~i~a~l~R~-------------------------------------------   37 (130)
                      +|+||++|+||||||||||||+++|+||.|+|+++|+                                           
T Consensus        62 le~aLl~g~iDiAVHSlKDlP~~l~~gl~iaav~~R~dprD~Lv~~~~~~~~l~~Lp~ga~IGTsS~RR~aql~~~~pdl  141 (215)
T PF01379_consen   62 LEEALLDGEIDIAVHSLKDLPTELPEGLVIAAVLKREDPRDVLVSRGRDGKSLEDLPKGARIGTSSLRRRAQLKRLRPDL  141 (215)
T ss_dssp             HHHHHHTTS-SEEEEEGGGS-SS--TTEEEEEE-------EEEEE-GCTTSSCCCS-TT-EEE---HHHHHHHHHH-TTS
T ss_pred             HHHHHHcCCccEEEeccccCCCCCCCCceEeccCCCCCCccEEEEecCCCCChHHCccccccCCCCHHHHHHHHHhccCC
Confidence            5899999999999999999999999999999999998                                           


Q ss_pred             ------CcHHHHHHhhhcCCcceeehhHhhhhhcCCCCCceeecCCCCCccCcccchhhhhhccCcHHHHHHHh
Q 038122           38 ------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSNDKKMAKYLG  105 (130)
Q Consensus        38 ------GNv~TRl~KL~~g~~daiiLA~AGL~RLg~~~~i~~~l~~~~~~pA~gQGaiaie~r~~d~~~~~ll~  105 (130)
                            |||+|||+||++|+|||||||+|||+|||++++++++|++++|+||||||+||||||++|.++.++|+
T Consensus       142 ~~~~iRGNv~TRL~KL~~g~~daiiLA~AGL~RLgl~~~~~~~l~~~~~~PA~gQGalave~r~~d~~~~~llK  215 (215)
T PF01379_consen  142 EVVPIRGNVDTRLRKLDEGEYDAIILAAAGLKRLGLEDRISEILDPEEMLPAPGQGALAVECRKDDEEIIELLK  215 (215)
T ss_dssp             EEE---S-HHHHHHHHHCTS-SEEEEEHHHHHHCT-GGGESEEE-TTTS-B-TTTT-EEEEEETT-HHHHHHH-
T ss_pred             eEEEecCCHHHHHHHhcccCCCEEEhhhChhhhccccceeeeecCchhcCCCCCCeEEEEEEecCcHHHHHHhC
Confidence                  99999999999999999999999999999999999999999999999999999999999999999985

The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. Porphobilinogen deaminase (also known as hydroxymethylbilane synthase, 2.5.1.61 from EC) functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the polymerisation of four PBG molecules into the tetrapyrrole structure, preuroporphyrinogen, with the concomitant release of four molecules of ammonia. This enzyme uses a unique dipyrro-methane cofactor made from two molecules of PBG, which is covalently attached to a cysteine side chain. The tetrapyrrole product is synthesized in an ordered, sequential fashion, by initial attachment of the first pyrrole unit (ring A) to the cofactor, followed by subsequent additions of the remaining pyrrole units (rings B, C, D) to the growing pyrrole chain []. The link between the pyrrole ring and the cofactor is broken once all the pyrroles have been added. This enzyme is folded into three distinct domains that enclose a single, large active site that makes use of an aspartic acid as its one essential catalytic residue, acting as a general acid/base during catalysis [, ]. A deficiency of hydroxymethylbilane synthase is implicated in the neuropathic disease, Acute Intermittent Porphyria (AIP) []. This entry represents the N-terminal domains 1 and 2 of porphobilinogen deaminase, an enzyme involved in tetrapyrrole biosynthesis. The structure of this domain consists of a duplication of two similar intertwined domains with three layers of (a/b/a) each. Porphobilinogen deaminase has a three-domain structure. Domains 1 (N-terminal) and 2 are duplications with the same structure, resembling the transferrins and periplasmic binding proteins. The dipyrromethane cofactor is covalently linked to domain 3 (C-terminal), but is bound by extensive salt-bridges and hydrogen-bonds within the cleft between domains 1 and 2, at a position corresponding to the binding sites for small-molecule ligands in the analogous proteins []. The enzyme has a single catalytic site, and the flexibility between domains is thought to aid elongation of the polypyrrole product in the active-site cleft of the enzyme.; GO: 0033014 tetrapyrrole biosynthetic process; PDB: 1GTK_A 1AH5_A 2YPN_A 1PDA_A 1YPN_A 3EQ1_B 3ECR_A.

>KOG2892 consensus Porphobilinogen deaminase [Coenzyme transport and metabolism]

Probab=100.00  E-value=1.2e-44  Score=296.62  Aligned_cols=130  Identities=54%  Similarity=0.864  Sum_probs=128.0

Q ss_pred             ChHhhhcCCCcEEeecCCCCCCCCCCCeeeccccCCC-------------------------------------------
Q 038122            1 TEEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE-------------------------------------------   37 (130)
Q Consensus         1 ~e~aLl~g~iDiAVHSlKDlP~~~~~gl~i~a~l~R~-------------------------------------------   37 (130)
                      ||.+|.+|.+||+||||||||+.+|+|++|+|++||+                                           
T Consensus        68 LE~aL~~~~~divVHSLKDlPT~LP~G~~ig~i~kRedp~DalV~~~~s~~kTladLP~GsVVGTSSlRR~Aql~RkyPH  147 (320)
T KOG2892|consen   68 LEDALINGHVDIVVHSLKDLPTYLPEGMIIGCILKREDPRDALVFLTYSAYKTLADLPAGSVVGTSSLRRKAQILRKYPH  147 (320)
T ss_pred             HHHHHhcCCccEEEEecccccccCCCCcEeccccCCCCccceEEEecccccccHhhCCCCceechHHHhHHHHHHhhCCc
Confidence            5899999999999999999999999999999999998                                           


Q ss_pred             -------CcHHHHHHhhhcCC-cceeehhHhhhhhcCCCCCceeecCCCCCccCcccchhhhhhccCcHHHHHHHhccCC
Q 038122           38 -------GNVQARLRKLNEGV-IQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNH  109 (130)
Q Consensus        38 -------GNv~TRl~KL~~g~-~daiiLA~AGL~RLg~~~~i~~~l~~~~~~pA~gQGaiaie~r~~d~~~~~ll~~i~~  109 (130)
                             ||++|||+||+.++ |.+||||.|||+|+||.++++++|.|++|+||+|||+++|+||.+|+++..++..++|
T Consensus       148 L~f~~~rgn~~trl~kld~~~~~~~iilA~agl~rmg~~~ri~qil~p~~~~~avgqgalgie~r~~d~~m~~~l~~l~~  227 (320)
T KOG2892|consen  148 LHVESIRGNLQTRLSKLDGGKPFQAIILALAGLKRMGWTNRIAQILHPDEMLYAVGQGALGIECRADDDKMLTYLASLND  227 (320)
T ss_pred             eEEEEecChHHHHHHhhcCCCcchhHHHHHHHHHHhhhHhHHHHhcChHHHHHHhccceeEEEEecChHHHHHHHHHhcC
Confidence                   99999999999987 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHcCCCC
Q 038122          110 EETRQAVVCERAFLGTLDGSC  130 (130)
Q Consensus       110 ~~t~~~~~aER~~l~~l~ggC  130 (130)
                      .+|+.|+.+||+||+.|+|||
T Consensus       228 ~~t~~~~~~eraflrtl~Ggc  248 (320)
T KOG2892|consen  228 LNTTLRILAERAFLRTLEGGC  248 (320)
T ss_pred             hHHHHHHHHHHHHHHhhCCCc
Confidence            999999999999999999999

>PRK01066 porphobilinogen deaminase; Provisional

Probab=100.00  E-value=2.8e-44  Score=287.91  Aligned_cols=106  Identities=25%  Similarity=0.305  Sum_probs=102.1

Q ss_pred             ChHhhhcCCCcEEeecCCCCCCCCCCCeeeccccCCC-------------------------------------------
Q 038122            1 TEEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE-------------------------------------------   37 (130)
Q Consensus         1 ~e~aLl~g~iDiAVHSlKDlP~~~~~gl~i~a~l~R~-------------------------------------------   37 (130)
                      +|+||++|++|||||||||||+  |+||+++|+++|+                                           
T Consensus        78 le~aLl~g~iDiAVHSlKDlPt--~~gl~l~av~~RedprDvLv~~~~~~l~~Lp~ga~IGTSS~RR~aql~~~rPdl~v  155 (231)
T PRK01066         78 VDFLVLSGQCDLAIHSAKDLPE--PPKLTVVAITAGLDPRDLLVYAEKYLSQPLPRRPRIGSSSLRREELLKLLFPSGII  155 (231)
T ss_pred             HHHHHHcCCCCEEEecCCcCCC--CCCCEEEEEcCCCCCceEEEECCCCchhhCCCCCEEeCChHHHHHHHHHHCCCCEE
Confidence            5899999999999999999999  9999999999997                                           


Q ss_pred             ----CcHHHHHHhhhcCCcceeehhHhhhhhcCCCCCceeecCCCCCccCcccchhhhhhccCcHHHHHHHhccCCHH
Q 038122           38 ----GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEE  111 (130)
Q Consensus        38 ----GNv~TRl~KL~~g~~daiiLA~AGL~RLg~~~~i~~~l~~~~~~pA~gQGaiaie~r~~d~~~~~ll~~i~~~~  111 (130)
                          |||+|||+||++|+|||||||+|||+|||+.++++++|+++   ||||||+||||||++|+++.++++.|||.+
T Consensus       156 ~~iRGNV~TRL~KL~~ge~DaiiLA~AGL~RLgl~~~~~~~l~~~---~A~gQGalaie~R~~d~~~~~ll~~i~~~~  230 (231)
T PRK01066        156 LDIRGTIEERLKLLEEKKYDAIVVAKAAVLRLGLRLPYTKELPPP---YHPLQGRLAITASKHIRSWKGLFLPLGITE  230 (231)
T ss_pred             EeCcCCHHHHHHHhcCCCCCchhhHHHHHHhcCCcccceeECCCC---CCCCCCeEEEEEecCCHHHHHHHHHhcCCC
Confidence                99999999999999999999999999999999999999998   499999999999999999999999999964

>PF14503 YhfZ_C: YhfZ C-terminal domain; PDB: 2OZZ_B

Probab=82.76  E-value=3.4  Score=33.64  Aligned_cols=74  Identities=18%  Similarity=0.131  Sum_probs=40.4

Q ss_pred             HHHHHhhhcCCcceeehhHhhhhhcCCCCCceeecCCCCCccCcccchhhhhhccCcHHHHHHHhccCCHHHHHHHH
Q 038122           41 QARLRKLNEGVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVV  117 (130)
Q Consensus        41 ~TRl~KL~~g~~daiiLA~AGL~RLg~~~~i~~~l~~~~~~pA~gQGaiaie~r~~d~~~~~ll~~i~~~~t~~~~~  117 (130)
                      +.=++.|.+|+.||.|-=..-++.-.. ......++...+.-..++-+  |.+|++|..+..+|+++=|.+....+.
T Consensus       147 ~q~~~~l~~g~IDA~IWN~d~i~~~~~-~l~~~~l~~~~~~~~~seAV--ivi~~~~~~i~~ll~~~id~~~vl~iQ  220 (232)
T PF14503_consen  147 NQLLELLRSGEIDAAIWNYDEIEDKNF-GLKYVPLKDDPMSKDASEAV--IVIRKDNEPIKALLRKLIDVEKVLEIQ  220 (232)
T ss_dssp             HHHHHHHHHTS--EEEEE--HHCCHHC-TEEEEE--SSCHHHHTT-EE--EEEETT-HHHHHHHHHH--HHHHHHHH
T ss_pred             HHHHHHHHCCCccEEEECCcccccccC-CeeEEeCCchHHHHhcCeeE--EEEeCCCHHHHHHHHHhcCHHHHHHHH
Confidence            445777888999999986663333321 11123444444444455554  567899999999999887877765554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	130
4htg_A	320	Porphobilinogen Deaminase From Arabidopsis Thaliana		2e-45
1pda_A	313	Structure Of Porphobilinogen Deaminase Reveals A Fl		5e-15
2ypn_A	313	Hydroxymethylbilane Synthase Length = 313		6e-15
1ypn_A	313	Reduced Form Hydroxymethylbilane Synthase (K59q Mut		7e-15
1ah5_A	313	Reduced Form Selenomethionine-Labelled Hydroxymethy		6e-14
3eq1_A	361	The Crystal Structure Of Human Porphobilinogen Deam		3e-12
3ecr_A	364	Structure Of Human Porphobilinogen Deaminase Length		5e-12

>pdb|4HTG|A Chain A, Porphobilinogen Deaminase From Arabidopsis Thaliana Length = 320

Iteration: 1
 Score =  177 bits (448), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 99/177 (55%), Positives = 109/177 (61%), Gaps = 48/177 (27%)
Query: 2   EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
           +EALING IDIAVHSMKDVPTYL +KTILPCNL RE                        
Sbjct: 78  DEALINGHIDIAVHSMKDVPTYLPEKTILPCNLPREDVRDAFICLTAATLAELPAGSVVG 137
Query: 38  ------------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTN 73
                                   GNVQ RL KL  G +QATL ALAGLK L+MTENV +
Sbjct: 138 TASLRRKSQILHKYPALHVEENFRGNVQTRLSKLQGGKVQATLLALAGLKRLSMTENVAS 197
Query: 74  ILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
           IL +D+ML AVAQGAIGIAC ++D KMA YL SLNHEETR A+ CERAFL TLDGSC
Sbjct: 198 ILSLDEMLPAVAQGAIGIACRTDDDKMATYLASLNHEETRLAISCERAFLETLDGSC 254

>pdb|1PDA|A Chain A, Structure Of Porphobilinogen Deaminase Reveals A Flexible Multidomain Polymerase With A Single Catalytic Site Length = 313

Iteration: 1
 Score = 76.3 bits (186), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 77/178 (43%), Gaps = 51/178 (28%)
Query: 2   EEALINGEIDIAVHSMKDVPTYL--------------------------LDKTILPC--- 32
           E AL+    DIAVHSMKDVP                             LD   LP    
Sbjct: 67  EVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDA--LPAGSI 124
Query: 33  ----NLQRE----------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVT 72
               +L+R+                GNV  RL KL+ G   A + A+AGLK L +   + 
Sbjct: 125 VGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIR 184
Query: 73  NILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
             LP +  L AV QGA+GI C  +D +  + L +LNH ET   V  ERA    L+G+C
Sbjct: 185 AALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRLEGAC 242

>pdb|2YPN|A Chain A, Hydroxymethylbilane Synthase Length = 313

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 76/178 (42%), Gaps = 51/178 (28%)
Query: 2   EEALINGEIDIAVHSMKDVPTYL--------------------------LDKTILPC--- 32
           E AL+    DIAVHSMKDVP                             LD   LP    
Sbjct: 67  EVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDA--LPAGSI 124
Query: 33  ----NLQRE----------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVT 72
               +L+R+                GNV  RL KL+ G   A + A+AGLK L +   + 
Sbjct: 125 VGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIR 184
Query: 73  NILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
             LP +  L AV QGA+GI C  +D +  + L +LNH ET   V  ERA    L+G C
Sbjct: 185 AALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRLEGGC 242

>pdb|1YPN|A Chain A, Reduced Form Hydroxymethylbilane Synthase (K59q Mutant) Crystal Structure After 2 Hours In A Flow Cell Determined By Time-Resolved Laue Diffraction Length = 313

Iteration: 1
 Score = 75.9 bits (185), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/178 (33%), Positives = 76/178 (42%), Gaps = 51/178 (28%)
Query: 2   EEALINGEIDIAVHSMKDVPTYL--------------------------LDKTILPC--- 32
           E AL+    DIAVHSMKDVP                             LD   LP    
Sbjct: 67  EVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDA--LPAGSI 124
Query: 33  ----NLQRE----------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVT 72
               +L+R+                GNV  RL KL+ G   A + A+AGLK L +   + 
Sbjct: 125 VGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIR 184
Query: 73  NILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
             LP +  L AV QGA+GI C  +D +  + L +LNH ET   V  ERA    L+G C
Sbjct: 185 AALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRLEGGC 242

>pdb|1AH5|A Chain A, Reduced Form Selenomethionine-Labelled Hydroxymethylbilane Synthase Determined By Mad Length = 313

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 59/178 (33%), Positives = 75/178 (42%), Gaps = 51/178 (28%)
Query: 2   EEALINGEIDIAVHSMKDVPTYL--------------------------LDKTILPC--- 32
           E AL+    DIAVHS KDVP                             LD   LP    
Sbjct: 67  EVALLENRADIAVHSXKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDA--LPAGSI 124
Query: 33  ----NLQRE----------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVT 72
               +L+R+                GNV  RL KL+ G   A + A+AGLK L +   + 
Sbjct: 125 VGTSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIR 184
Query: 73  NILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
             LP +  L AV QGA+GI C  +D +  + L +LNH ET   V  ERA    L+G C
Sbjct: 185 AALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAXNTRLEGGC 242

>pdb|3EQ1|A Chain A, The Crystal Structure Of Human Porphobilinogen Deaminase At 2.8a Resolution Length = 361

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 79/180 (43%), Gaps = 51/180 (28%)
Query: 2   EEALINGEIDIAVHSMKDVPTYL-------------------------LDKTI--LP--- 31
           E AL   E+D+ VHS+KD+PT L                         + KT+  LP   
Sbjct: 82  EHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPHDAVVFHPKFVGKTLETLPEKS 141
Query: 32  ----------CNLQR----------EGNVQARLRKLNEGV-IQATLSALAGLKCLNMTEN 70
                       LQR          +GN+  RLRKL+E     A + A AGL+ +     
Sbjct: 142 VVGTSSLRRAAQLQRKFPHLEFRSIQGNLNTRLRKLDEQQEFSAIILATAGLQRMGWHNR 201
Query: 71  VTNILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
           V  IL  ++ + AV QGA+G+   + D+ +   +G L+  ET    + ERAFL  L+G C
Sbjct: 202 VGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHDPETLLRCIAERAFLRHLEGGC 261

>pdb|3ECR|A Chain A, Structure Of Human Porphobilinogen Deaminase Length = 364

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 79/180 (43%), Gaps = 51/180 (28%)
Query: 2   EEALINGEIDIAVHSMKDVPTYL-------------------------LDKTI--LP--- 31
           E AL   E+D+ VHS+KD+PT L                         + KT+  LP   
Sbjct: 85  EHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPHDAVVFHPKFVGKTLETLPEKS 144
Query: 32  ----------CNLQRE----------GNVQARLRKLNEGV-IQATLSALAGLKCLNMTEN 70
                       LQR+          GN+  RLRKL+E     A + A AGL+ +     
Sbjct: 145 VVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQQEFSAIILATAGLQRMGWHNR 204
Query: 71  VTNILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
           V  IL  ++ + AV QGA+G+   + D+ +   +G L+  ET    + ERAFL  L+G C
Sbjct: 205 VGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHDPETLLRCIAERAFLRHLEGGC 264

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	130
1gtk_A	313	Porphobilinogen deaminase; lyase, biosynthesis of	1e-51
3ecr_A	364	Porphobilinogen deaminase; heme biosynthesis, porp	5e-48

>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A* Length = 313

 Score =  164 bits (418), Expect = 1e-51
 Identities = 57/176 (32%), Positives = 71/176 (40%), Gaps = 47/176 (26%)

Query: 2   EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
           E AL+    DIAVHSMKDVP        L    +RE                        
Sbjct: 67  EVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVG 126

Query: 38  -----------------------GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNI 74
                                  GNV  RL KL+ G   A + A+AGLK L +   +   
Sbjct: 127 TSSLRRQCQLAERRPDLIIRSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIRAA 186

Query: 75  LPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
           LP +  L AV QGA+GI C  +D +  + L +LNH ET   V  ERA    L+G C
Sbjct: 187 LPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETALRVTAERAMNTRLEGGC 242

>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A* Length = 364

 Score =  156 bits (397), Expect = 5e-48
 Identities = 50/180 (27%), Positives = 73/180 (40%), Gaps = 51/180 (28%)

Query: 2   EEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE------------------------ 37
           E AL   E+D+ VHS+KD+PT L     +    +RE                        
Sbjct: 85  EHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPHDAVVFHPKFVGKTLETLPEKS 144

Query: 38  --------------------------GNVQARLRKLNE-GVIQATLSALAGLKCLNMTEN 70
                                     GN+  RLRKL+E     A + A AGL+ +     
Sbjct: 145 VVGTSSLRRAAQLQRKFPHLEFRSIRGNLNTRLRKLDEQQEFSAIILATAGLQRMGWHNR 204

Query: 71  VTNILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETRQAVVCERAFLGTLDGSC 130
           V  IL  ++ + AV QGA+G+   + D+ +   +G L+  ET    + ERAFL  L+G C
Sbjct: 205 VGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHDPETLLRCIAERAFLRHLEGGC 264

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	130
1gtk_A	313	Porphobilinogen deaminase; lyase, biosynthesis of	100.0
3ecr_A	364	Porphobilinogen deaminase; heme biosynthesis, porp	100.0

>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A*

Probab=100.00  E-value=6.8e-57  Score=372.65  Aligned_cols=130  Identities=44%  Similarity=0.618  Sum_probs=128.4

Q ss_pred             ChHhhhcCCCcEEeecCCCCCCCCCCCeeeccccCCC-------------------------------------------
Q 038122            1 TEEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE-------------------------------------------   37 (130)
Q Consensus         1 ~e~aLl~g~iDiAVHSlKDlP~~~~~gl~i~a~l~R~-------------------------------------------   37 (130)
                      +|+||++|+||||||||||||+++|+||+++|+++|+                                           
T Consensus        66 Le~aLl~g~iDiAVHSlKDvPt~lp~gl~l~av~~RedprDalV~~~~~~l~~LP~Ga~VGTSSlRR~aQL~~~rPdl~i  145 (313)
T 1gtk_A           66 LEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLII  145 (313)
T ss_dssp             HHHHHHTTSCSEEEEEGGGSCSCCCTTEEEEEECCCCCCCEEEECSSCSSGGGCCTTCEEECCCHHHHHHHHHHCTTSEE
T ss_pred             HHHHHHcCCCcEEEecCCCCCCCCCCCcEEEEEecCCCcceEEEECCCCChhhCCCCCEEecCCHHHHHHHHHHCCCCEE
Confidence            5899999999999999999999999999999999998                                           


Q ss_pred             ----CcHHHHHHhhhcCCcceeehhHhhhhhcCCCCCceeecCCCCCccCcccchhhhhhccCcHHHHHHHhccCCHHHH
Q 038122           38 ----GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNHEETR  113 (130)
Q Consensus        38 ----GNv~TRl~KL~~g~~daiiLA~AGL~RLg~~~~i~~~l~~~~~~pA~gQGaiaie~r~~d~~~~~ll~~i~~~~t~  113 (130)
                          |||+|||+||++|+|||||||+|||+|||+.++++++|++++|+||||||+||||||++|+++.++|+.|||++|+
T Consensus       146 ~~lRGNV~TRL~KL~~g~~DaiiLA~AGL~RLgl~~~i~~~l~~~~~lPA~gQGalaIe~r~~d~~~~~ll~~l~d~~t~  225 (313)
T 1gtk_A          146 RSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAALNHHETA  225 (313)
T ss_dssp             ECCCSCHHHHHHHHHTTSCSEEEEEHHHHHHTTCGGGCSEECCTTTSCCCTTTTCEEEEEETTCHHHHHHHGGGCCHHHH
T ss_pred             EeCCCCHHHHHHHhhCCCCCEEEHhhhHHHHcCCccccceeeChhhcCCCcCCceEEEEEccCcHHHHHHHHHCCCHHHH
Confidence                9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhHHcCCCC
Q 038122          114 QAVVCERAFLGTLDGSC  130 (130)
Q Consensus       114 ~~~~aER~~l~~l~ggC  130 (130)
                      .++.+||+||+.|+|||
T Consensus       226 ~~~~aERa~l~~L~GgC  242 (313)
T 1gtk_A          226 LRVTAERAMNTRLEGGC  242 (313)
T ss_dssp             HHHHHHHHHHHHHTCCT
T ss_pred             HHHHHHHHHHHHhCCCC
Confidence            99999999999999999

>3ecr_A Porphobilinogen deaminase; heme biosynthesis, porphobilinogen hinge, alternative splicing, cytoplasm, disease mutation, porphyrin biosynthesis; HET: DPM; 2.18A {Homo sapiens} PDB: 3eq1_A*

Probab=100.00  E-value=4.7e-55  Score=367.03  Aligned_cols=130  Identities=38%  Similarity=0.604  Sum_probs=125.7

Q ss_pred             ChHhhhcCCCcEEeecCCCCCCCCCCCeeeccccCCC-------------------------------------------
Q 038122            1 TEEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE-------------------------------------------   37 (130)
Q Consensus         1 ~e~aLl~g~iDiAVHSlKDlP~~~~~gl~i~a~l~R~-------------------------------------------   37 (130)
                      +|+||++|+||||||||||||+++|+||+++|+++|+                                           
T Consensus        84 Le~ALl~g~iDiAVHSlKDvPt~lp~gl~l~av~~ReDprDalV~~~~~~~~~l~~LP~Ga~VGTSSlRR~aQL~~~rPd  163 (364)
T 3ecr_A           84 LEHALEKNEVDLVVHSLKDLPTVLPPGFTIGAICKRENPHDAVVFHPKFVGKTLETLPEKSVVGTSSLRRAAQLQRKFPH  163 (364)
T ss_dssp             HHHHHHTTSCSEEEEEGGGSCSSCCTTEEEEEECCCCCCCEEEEECTTCTTCCTTTSCTTCEEECCCHHHHHHHHHHCTT
T ss_pred             HHHHHhcCCCCEEEECcccCCCCCCCCcEEEEEcCCCCcceEEEEcCccCCCChhHCCCcCEEeCCcHHHHHHHHHHCCC
Confidence            5899999999999999999999999999999999988                                           


Q ss_pred             -------CcHHHHHHhhhc-CCcceeehhHhhhhhcCCCCCceeecCCCCCccCcccchhhhhhccCcHHHHHHHhccCC
Q 038122           38 -------GNVQARLRKLNE-GVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSLNH  109 (130)
Q Consensus        38 -------GNv~TRl~KL~~-g~~daiiLA~AGL~RLg~~~~i~~~l~~~~~~pA~gQGaiaie~r~~d~~~~~ll~~i~~  109 (130)
                             |||+|||+||++ |+|||||||+|||+|||+.++++++|++++|+||||||+||||||++|.++.++|+.|||
T Consensus       164 L~i~~lRGNV~TRL~KL~~gg~~DAiILA~AGL~RLgl~~~i~~~l~~~~~lPA~gQGaLaIe~R~~D~~~~~ll~~l~d  243 (364)
T 3ecr_A          164 LEFRSIRGNLNTRLRKLDEQQEFSAIILATAGLQRMGWHNRVGQILHPEECMYAVGQGALGVEVRAKDQDILDLVGVLHD  243 (364)
T ss_dssp             SEEECCCSCHHHHHHHHHHSSSCSEEEEEHHHHHHTTCGGGCCEECCTTTCCBCTTTTCEEEEEETTCHHHHHHHHTTCC
T ss_pred             CEEEECCCCHHHHHHHhhcCCCcCEEEehhhHHhhcCCchheeEecChhhcCCccccceeEEEEecCCHHHHHHHHHcCC
Confidence                   999999999999 599999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHHcCCCC
Q 038122          110 EETRQAVVCERAFLGTLDGSC  130 (130)
Q Consensus       110 ~~t~~~~~aER~~l~~l~ggC  130 (130)
                      ++|+.++.+||+||+.|+|||
T Consensus       244 ~~T~~~v~AERa~l~~L~GGC  264 (364)
T 3ecr_A          244 PETLLRCIAERAFLRHLEGGC  264 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHC--C
T ss_pred             HHHHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	130
d1pdaa1	217	c.94.1.1 (A:3-219) Porphobilinogen deaminase (hydr	7e-15
d1pdaa2	88	d.50.2.1 (A:220-307) Porphobilinogen deaminase (hy	2e-05

>d1pdaa1 c.94.1.1 (A:3-219) Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 65.8 bits (160), Expect = 7e-15
 Identities = 29/71 (40%), Positives = 40/71 (56%)

Query: 37  EGNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSN 96
            GNV  RL KL+ G   A + A+AGLK L +   +   LP +  L AV QGA+GI C  +
Sbjct: 147 RGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLD 206

Query: 97  DKKMAKYLGSL 107
           D +  + L +L
Sbjct: 207 DSRTRELLAAL 217

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	130
d1pdaa1	217	Porphobilinogen deaminase (hydroxymethylbilane syn	100.0

>d1pdaa1 c.94.1.1 (A:3-219) Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Porphobilinogen deaminase (hydroxymethylbilane synthase), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.9e-47  Score=297.42  Aligned_cols=107  Identities=43%  Similarity=0.594  Sum_probs=104.4

Q ss_pred             ChHhhhcCCCcEEeecCCCCCCCCCCCeeeccccCCC-------------------------------------------
Q 038122            1 TEEALINGEIDIAVHSMKDVPTYLLDKTILPCNLQRE-------------------------------------------   37 (130)
Q Consensus         1 ~e~aLl~g~iDiAVHSlKDlP~~~~~gl~i~a~l~R~-------------------------------------------   37 (130)
                      +|++|++|++||||||+||||+++|+|+.++|+++|+                                           
T Consensus        64 le~~Ll~~~iDiAVHS~KDlP~~~~~~l~i~a~~~R~d~rD~li~~~~~~l~~l~~~~~IGTsS~RR~aql~~~~p~l~~  143 (217)
T d1pdaa1          64 LEVALLENRADIAVHSMKDVPVEFPQGLGLVTICEREDPRDAFVSNNYDSLDALPAGSIVGTSSLRRQCQLAERRPDLII  143 (217)
T ss_dssp             HHHHHHTTSCSEEEEEGGGSCSCCCTTEEEEEECCCCCCCEEEECSSCSSTTTSCTTCEEECCCHHHHHHHHHHCTTSEE
T ss_pred             HHHHHHcCccceehhhhcccccccCCccccccccccCCcchhccccCcCCHhhCCCCCEecccchhHHHHHHHhCCCCce
Confidence            4899999999999999999999999999999999998                                           


Q ss_pred             ----CcHHHHHHhhhcCCcceeehhHhhhhhcCCCCCceeecCCCCCccCcccchhhhhhccCcHHHHHHHhcc
Q 038122           38 ----GNVQARLRKLNEGVIQATLSALAGLKCLNMTENVTNILPIDDMLLAVAQGAIGIACTSNDKKMAKYLGSL  107 (130)
Q Consensus        38 ----GNv~TRl~KL~~g~~daiiLA~AGL~RLg~~~~i~~~l~~~~~~pA~gQGaiaie~r~~d~~~~~ll~~i  107 (130)
                          |||+|||+||.+|+|||||||+|||+|||+.++++++|++++|+||||||+||||||++|.++++++++|
T Consensus       144 ~~iRGNv~TRl~Kl~~g~~DaiILA~AGL~RL~l~~~i~~~l~~~~~~PA~gQGaiaIe~r~~d~~~~~il~~i  217 (217)
T d1pdaa1         144 RSLRGNVGTRLSKLDNGEYDAIILAVAGLKRLGLESRIRAALPPEISLPAVGQGAVGIECRLDDSRTRELLAAL  217 (217)
T ss_dssp             ECCCSCHHHHHHHHHTTSCSEEEEEHHHHHHTTCGGGCSEECCTTTSCCCTTTTCEEEEEETTCHHHHHHHGGG
T ss_pred             eecccchhhHHHHhhccCcCEEEeehhHHhhcCcchheeEEcChhhcCChHhhhheEEEEcCCCHHHHHHHhcC
Confidence                9999999999999999999999999999999999999999999999999999999999999999999875