Citrus Sinensis ID: 038428

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180--
Protein Sequence
MANVMPHRKLSTTTIHIMALDGIIHVNSLFTLGLFLGLTLYPDPAATLVSGSCSAGLAIAENLVSCHVYSFSSFLFSSLIASALKQAIKIANGNREYEERGLSMTNLRVNLMVLRFGILVSAVGSVFGCGFLTMALVNMVQIKLGVLGCKSFHTLAAISPLVTLVPLALAIYVGLVLYAFSR
Secondary Structure (PSIPRED)
cccccccccccccEEHHHHHccEEEcHHHHHHHHHHHcccccccccccccccccccHHHHccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHcccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccEEEEEHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEHHcccEEHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
manvmphrklstTTIHIMALDGIIHVNSLFTLGLFLgltlypdpaatlvsgscSAGLAIAENLVSCHVYSFSSFLFSSLIASALKQAIKIANGnreyeerglsmTNLRVNLMVLRFGILVSAVGSVFGCGFLTMALVNMVQIKLGVLGCKSFHTLAAISPLVTLVPLALAIYVGLVLYAFSR
Flexible Loop (DISEMBL)
manvmphrklSTTTIHIMALDGIIHVNSLFTLGLFLGLTLYPDPAATLVSGSCSAGLAIAENLVSCHVYSFSSFLFSSLIASALKQAIKIANGNREYEERGLSMTNLRVNLMVLRFGILVSAVGSVFGCGFLTMALVNMVQIKLGVLGCKSFHTLAAISPLVTLVPLALAIYVGLVLYAFSR
Low Complexity Region (SEG)
MANVMPHRKLSTTTIHIMALDGIIHVNSlftlglflgltlYPDPAATLVSGSCSAGLAIAENLVSCHVYsfssflfssliasalKQAIKIANGNREYEERGLSMTNLRVNLMVLRFGILVSAVGSVFGCGFLTMALVNMVQIKLGVLGCKSFHTLAAISPLVTLVPLALAIYVGLVLYAFSR
Disordered region (IsUnstruct)
**********STTTIHIMALDGIIHVNSLFTLGLFLGLTLYPDPAATLVSGSCSAGLAIAENLVSCHVYSFSSFLFSSLIASALKQAIKIANGNREYEERGLSMTNLRVNLMVLRFGILVSAVGSVFGCGFLTMALVNMVQIKLGVLGCKSFHTLAAISPLVTLVPLALAIYVGLVLYAF**
Disordered Region (DISOPRED)
*************TIHIMALDGIIHVNSLFTLGLFLGLTLY************SAGLAIAENLVSCHVYSFSSFLFSSLIASALKQAIKIANGNREYEERGLSMTNLRVNLMVLRFGILVSAVGSVFGCGFLTMALVNMVQIKLGVLGCKSFHTLAAISPLVTLVPLALAIYVGLVLYAFSR
Disordered Region (DISEMBL)
*********LSTTTIHIMALDGIIHVNSLFTLGLFLGLTLYPDPAATLVSGSCSAGLAIAENLVSCHVYSFSSFLFSSLIASALKQAIKIANGNREYEERGLSMTNLRVNLMVLRFGILVSAVGSVFGCGFLTMALVNMVQIKLGVLGCKSFHTLAAISPLVTLVPLALAIYVGLVLYAFSR
Disordered Region (DISPRO)
**********STTTIHIMALDGIIHVNSLFTLGLFLGLTLYPDPAATLVSGSCSAGLAIAENLVSCHVYSFSSFLFSSLIASALKQAIKIANGNREYEERGLSMTNLRVNLMVLRFGILVSAVGSVFGCGFLTMALVNMVQIKLGVLGCKSFHTLAAISPLVTLVPLALAIYVGLVLYAFSR
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANVMPHRKLSTTTIHIMALDGIIHVNSLFTLGLFLGLTLYPDPAATLVSGSCSAGLAIAENLVSCHVYSFSSFLFSSLIASALKQAIKIANGNREYEERGLSMTNLRVNLMVLRFGILVSAVGSVFGCGFLTMALVNMVQIKLGVLGCKSFHTLAAISPLVTLVPLALAIYVGLVLYAFSR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
449473737	179	PREDICTED: uncharacterized protein LOC10	0.945	0.960	0.553	5e-48
224104369	176	predicted protein [Populus trichocarpa]	0.934	0.965	0.636	1e-44
297806613	175	hypothetical protein ARALYDRAFT_487395 [	0.939	0.977	0.563	6e-41
15239293	175	protein maternal effect embryo arrest 60	0.939	0.977	0.563	1e-40
147777469	591	hypothetical protein VITISV_011267 [Viti	0.901	0.277	0.604	4e-39
356541201	194	PREDICTED: uncharacterized protein LOC10	0.961	0.902	0.542	1e-38
15232676	204	uncharacterized protein [Arabidopsis tha	0.956	0.852	0.589	5e-37
297819268	203	hypothetical protein ARALYDRAFT_485060 [	0.956	0.857	0.592	8e-37
356541203	190	PREDICTED: uncharacterized protein LOC10	0.950	0.910	0.532	1e-36
356544556	192	PREDICTED: uncharacterized protein LOC10	0.950	0.901	0.557	2e-36

>gi|449473737|ref|XP_004153968.1| PREDICTED: uncharacterized protein LOC101213878 [Cucumis sativus] gi|449510742|ref|XP_004163747.1| PREDICTED: uncharacterized protein LOC101230280 [Cucumis sativus]

 Score =  196 bits (497), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 103/186 (55%), Positives = 137/186 (73%), Gaps = 14/186 (7%)

Query: 3   NVMPHRKLSTTTIHIMALDGIIHVNSLFTLGLFLGLTLYP--DPAATLV----SGSCSAG 56
           +V+P R+ ++T IHI+ALDGI++VNSLFT  +FLG+  YP  +PAA L+     G C+A 
Sbjct: 2   SVVPRRRSTSTRIHILALDGIVNVNSLFTFAVFLGVAWYPTANPAANLLPDDDDGPCAAA 61

Query: 57  LAIAENLVSCHVYSFSSFLFSSLIASALKQAIKIANGNREYEERGLSMTNLRVNLMVLRF 116
            ++AENL++CHVYSFS FLFSSLIASALKQAI++  G     + G   T+       LR 
Sbjct: 62  DSVAENLIACHVYSFSCFLFSSLIASALKQAIRLITGG----DGGQGETHAPA----LRV 113

Query: 117 GILVSAVGSVFGCGFLTMALVNMVQIKLGVLGCKSFHTLAAISPLVTLVPLALAIYVGLV 176
           G++ SAVGSV GCGFL  AL+N++QIKLGV GC+ + T+AA  PLV+LVPLAL IY+ LV
Sbjct: 114 GMMASAVGSVLGCGFLVAALLNLIQIKLGVFGCRRWETVAAAVPLVSLVPLALFIYIALV 173

Query: 177 LYAFSR 182
           ++AF+R
Sbjct: 174 IHAFTR 179

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104369|ref|XP_002313413.1| predicted protein [Populus trichocarpa] gi|222849821|gb|EEE87368.1| predicted protein [Populus trichocarpa]

 Score =  184 bits (467), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/176 (63%), Positives = 133/176 (75%), Gaps = 6/176 (3%)

Query: 13  TTIHIMALDGIIHVNSLFTLGLFLGLTLYP---DPAATLVSG-SCSAGLAIAENLVSCHV 68
           T IHIMALDGI++VNSLFTL LFLGL  YP   DP  TL++  SC A  +I E+L++ HV
Sbjct: 1   TRIHIMALDGIVNVNSLFTLALFLGLAWYPTAPDPTTTLITDTSCIASSSIVEDLIAFHV 60

Query: 69  YSFSSFLFSSLIASALKQAIKIANGNREYEERGL--SMTNLRVNLMVLRFGILVSAVGSV 126
           YSFSSFLFSSLIA A+KQ IKI + N++ +  G+  S    RVNL+ LR G LVS  GSV
Sbjct: 61  YSFSSFLFSSLIALAVKQTIKIFDTNKDDDSDGVVRSAPLARVNLVALRAGTLVSGFGSV 120

Query: 127 FGCGFLTMALVNMVQIKLGVLGCKSFHTLAAISPLVTLVPLALAIYVGLVLYAFSR 182
           FGCGFL MALV++VQIKLGVLGC S HT AA++PLV LVP A  IYV L+LYAF+R
Sbjct: 121 FGCGFLMMALVDLVQIKLGVLGCGSLHTFAAVTPLVILVPSASVIYVFLMLYAFAR 176

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806613|ref|XP_002871190.1| hypothetical protein ARALYDRAFT_487395 [Arabidopsis lyrata subsp. lyrata] gi|297317027|gb|EFH47449.1| hypothetical protein ARALYDRAFT_487395 [Arabidopsis lyrata subsp. lyrata]

 Score =  172 bits (436), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 98/174 (56%), Positives = 125/174 (71%), Gaps = 3/174 (1%)

Query: 12  TTTIHIMALDGIIHVNSLFTLGLFLGLTLYP-DPAATLVSG-SCSAGLAIAENLVSCHVY 69
           TT+IHI ALDGI++VNSLFTL +F+GL   P DP  +LV+  +C     +AENLV+ HVY
Sbjct: 2   TTSIHITALDGIVNVNSLFTLAVFIGLAWNPTDPDNSLVTDPNCVPTARMAENLVAFHVY 61

Query: 70  SFSSFLFSSLIASALKQAIKIANGNREYEERGLSMTNLRVNLMVLRFGILVSAVGSVFGC 129
           SF+SFLFSSLIA  LKQA+++   +  +    +      VN   LRFG+++S +GSV GC
Sbjct: 62  SFASFLFSSLIALGLKQAMRLNIASSFHISTRIDPVVYYVNKTALRFGMVISGLGSVCGC 121

Query: 130 GFLTMALVNMVQIKLGVLGC-KSFHTLAAISPLVTLVPLALAIYVGLVLYAFSR 182
           GFL +AL+N+VQIKLG LGC  S HT AA+ PLV LVP AL IYV L+LYAF+R
Sbjct: 122 GFLMLALINVVQIKLGTLGCGASGHTYAAVVPLVILVPSALFIYVSLMLYAFTR 175

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239293|ref|NP_196214.1| protein maternal effect embryo arrest 60 [Arabidopsis thaliana] gi|10177568|dbj|BAB10800.1| unnamed protein product [Arabidopsis thaliana] gi|21554350|gb|AAM63457.1| unknown [Arabidopsis thaliana] gi|98960927|gb|ABF58947.1| At5g05950 [Arabidopsis thaliana] gi|110737481|dbj|BAF00683.1| hypothetical protein [Arabidopsis thaliana] gi|332003561|gb|AED90944.1| protein maternal effect embryo arrest 60 [Arabidopsis thaliana]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 98/174 (56%), Positives = 124/174 (71%), Gaps = 3/174 (1%)

Query: 12  TTTIHIMALDGIIHVNSLFTLGLFLGLTLYP-DPAATLVSG-SCSAGLAIAENLVSCHVY 69
           TT+IHI ALDGI++VNSLFTL +F+GL   P DP  +LV+  +C     +AENLV+ HVY
Sbjct: 2   TTSIHITALDGIVNVNSLFTLAVFIGLAWNPTDPDNSLVTDPNCVPTARMAENLVAFHVY 61

Query: 70  SFSSFLFSSLIASALKQAIKIANGNREYEERGLSMTNLRVNLMVLRFGILVSAVGSVFGC 129
           SF+SFLFSSLIA  LKQA+++   +  +    +      VN   LRFG++ S +GSV GC
Sbjct: 62  SFASFLFSSLIALGLKQAMRLNIASSFHISTRIDPVVYYVNKTALRFGMVTSGLGSVCGC 121

Query: 130 GFLTMALVNMVQIKLGVLGC-KSFHTLAAISPLVTLVPLALAIYVGLVLYAFSR 182
           GFL +AL+N+VQIKLG LGC  S HT AA+ PLV LVP AL IYV L+LYAF+R
Sbjct: 122 GFLMLALINVVQIKLGTLGCGASGHTYAAVVPLVILVPSALFIYVSLMLYAFTR 175

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147777469|emb|CAN71704.1| hypothetical protein VITISV_011267 [Vitis vinifera]

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 104/172 (60%), Positives = 125/172 (72%), Gaps = 8/172 (4%)

Query: 8   RKLSTTTIHIMALDGIIHVNSLFTLGLFLGLTLYP--DPAATLV---SGSCSAGLAIAEN 62
           R+  +T+IHIMALDGI++VNSLFT  +FLGL  YP  DPA TL      +C A   + E+
Sbjct: 6   RRQFSTSIHIMALDGIVNVNSLFTFAVFLGLAWYPITDPAITLTGVAEPACVADTTMGED 65

Query: 63  LVSCHVYSFSSFLFSSLIASALKQAIKIANGNREYEERGLSMTNLRVNLMVLRFGILVSA 122
           LV+ HVYSFSSFLFSSL+A ALKQAI I  G  +   R + MT + VN   LR GILVSA
Sbjct: 66  LVAFHVYSFSSFLFSSLVAFALKQAIWIGQGGGKV--RSVPMT-IHVNTAALRAGILVSA 122

Query: 123 VGSVFGCGFLTMALVNMVQIKLGVLGCKSFHTLAAISPLVTLVPLALAIYVG 174
            GSVFGC FL +ALV++VQIKLG L C+SFH+LAAI PLV LVP AL ++VG
Sbjct: 123 AGSVFGCVFLMLALVDLVQIKLGTLACRSFHSLAAIVPLVILVPFALVVFVG 174

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541201|ref|XP_003539069.1| PREDICTED: uncharacterized protein LOC100787928 [Glycine max]

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 109/201 (54%), Positives = 135/201 (67%), Gaps = 26/201 (12%)

Query: 1   MANVMPHRKLSTTTIHIMALDGIIHVNSLFTLGLFLGLTLY---------PDPAATLVSG 51
           M++V   +  +TT IHIMALDGI++VNSLFTL LFLG+T            DPA      
Sbjct: 1   MSDVSRRKMTTTTRIHIMALDGIVNVNSLFTLALFLGITTTSTTNNLIGDDDPA------ 54

Query: 52  SCSAGLAIAENLVSCHVYSFSSFLFSSLIASALKQAI----KIANGNREYEERGLSMTNL 107
            C+AG +I+E+L++ HVYSFSSFLFSSLIA ALK  I     I +G+   +    +  N 
Sbjct: 55  -CAAGTSISEDLIAFHVYSFSSFLFSSLIALALKNIINFSKDIKDGDIVLDSSNNNNNNN 113

Query: 108 ------RVNLMVLRFGILVSAVGSVFGCGFLTMALVNMVQIKLGVLGCKSFHTLAAISPL 161
                 ++N +VLR G LVSA GSVFGCGFL MALV++VQIKLG LGC S HT AA++PL
Sbjct: 114 WVHSVAKINTVVLRLGTLVSAFGSVFGCGFLVMALVDLVQIKLGTLGCGSPHTFAAVAPL 173

Query: 162 VTLVPLALAIYVGLVLYAFSR 182
           + LVP AL IYV LVLYAF+R
Sbjct: 174 LVLVPTALLIYVVLVLYAFTR 194

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232676|ref|NP_190273.1| uncharacterized protein [Arabidopsis thaliana] gi|5541670|emb|CAB51176.1| putative protein [Arabidopsis thaliana] gi|38566644|gb|AAR24212.1| At3g46890 [Arabidopsis thaliana] gi|40824124|gb|AAR92350.1| At3g46890 [Arabidopsis thaliana] gi|332644694|gb|AEE78215.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  159 bits (401), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 112/190 (58%), Positives = 129/190 (67%), Gaps = 16/190 (8%)

Query: 7   HRKLSTTTIHIMALDGIIHVNSLFTLGLFLGLTLYPD---PAATLVSGS-------CSAG 56
            R L TT IH+ A+DGI++VNSLF+L LFLGLT   +   P ++  S +        + G
Sbjct: 13  RRLLPTTLIHVTAIDGIVNVNSLFSLALFLGLTTSGNITFPVSSSASENHHLRRCISAKG 72

Query: 57  LAIAENLVSCHVYSFSSFLFSSLIASALKQAIKIA----NGN-REYEERGLSMTNLRVNL 111
            A+AE LVS HVYSFS FLFSSLIA +LKQAI+      NGN  E E R L+    RVNL
Sbjct: 73  PALAERLVSSHVYSFSLFLFSSLIAMSLKQAIRTTTTTTNGNCLEEEARVLNAGEGRVNL 132

Query: 112 MVLRFGILVSAVGSVFGCGFLTMALVNMVQIKLGVLGCK-SFHTLAAISPLVTLVPLALA 170
             LR GI+ S V SV GCGFLTMALV++VQIKLG L CK SFH LAAI PLV LVP AL 
Sbjct: 133 AALRVGIVASCVASVLGCGFLTMALVDLVQIKLGPLECKRSFHALAAIVPLVVLVPSALI 192

Query: 171 IYVGLVLYAF 180
           IYV LVLYAF
Sbjct: 193 IYVFLVLYAF 202

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819268|ref|XP_002877517.1| hypothetical protein ARALYDRAFT_485060 [Arabidopsis lyrata subsp. lyrata] gi|297323355|gb|EFH53776.1| hypothetical protein ARALYDRAFT_485060 [Arabidopsis lyrata subsp. lyrata]

 Score =  158 bits (400), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 112/189 (59%), Positives = 128/189 (67%), Gaps = 15/189 (7%)

Query: 7   HRKLSTTTIHIMALDGIIHVNSLFTLGLFLGLTLYPD---PAATLVSGS-------CSAG 56
            R L TT IH+ ALDGI++VNSLF+L LFLGLT   +   P ++  + +        + G
Sbjct: 13  RRLLPTTLIHVTALDGIVNVNSLFSLALFLGLTTSGNITFPVSSSAAENHHLHRCIAAKG 72

Query: 57  LAIAENLVSCHVYSFSSFLFSSLIASALKQAIKIA---NGNREYEE-RGLSMTNLRVNLM 112
            A+AE LVS HVYSFS FLFSSLIA +LKQAI+     NGN   EE R L     RVNL 
Sbjct: 73  PALAERLVSSHVYSFSLFLFSSLIAMSLKQAIRTTTTTNGNVVVEEARVLKAGEGRVNLA 132

Query: 113 VLRFGILVSAVGSVFGCGFLTMALVNMVQIKLGVLGCK-SFHTLAAISPLVTLVPLALAI 171
            LR GI+ S V SV GCGFLTMALV++VQIKLG L CK SFH LAAI PLV LVP AL I
Sbjct: 133 ALRVGIVASCVASVLGCGFLTMALVDLVQIKLGPLECKRSFHALAAIIPLVVLVPSALVI 192

Query: 172 YVGLVLYAF 180
           YV LVLYAF
Sbjct: 193 YVFLVLYAF 201

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541203|ref|XP_003539070.1| PREDICTED: uncharacterized protein LOC100788464 [Glycine max]

 Score =  158 bits (399), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/199 (53%), Positives = 133/199 (66%), Gaps = 26/199 (13%)

Query: 1   MANVMPHRKLSTTTIHIMALDGIIHVNSLFTLGLFLGLT--------LYPDPAATLVSGS 52
           M++V   +   TT IHIMALDGI++VNSLFTL LFLG+T        +  D AA      
Sbjct: 1   MSDVSRRKMTRTTRIHIMALDGIVNVNSLFTLALFLGITTTSTTNTLIGEDDAA------ 54

Query: 53  CSAGLAIAENLVSCHVYSFSSFLFSSLIASALKQAIKIANGNREYEERGLSMTN------ 106
           C+AG +++E L++ HVYSFSSFLFSSLIA ALK  I   N +++  E    + N      
Sbjct: 55  CAAGTSMSEGLIAFHVYSFSSFLFSSLIALALKNVI---NFSKDVHEGDAVLDNNNNNWI 111

Query: 107 ---LRVNLMVLRFGILVSAVGSVFGCGFLTMALVNMVQIKLGVLGCKSFHTLAAISPLVT 163
               ++N +VLRFG LVSA GSVFGCGFL MALV++VQIKLG   C S HT AA++PL+ 
Sbjct: 112 HSVAKINTVVLRFGTLVSAFGSVFGCGFLVMALVDLVQIKLGTFTCGSPHTFAAVAPLLV 171

Query: 164 LVPLALAIYVGLVLYAFSR 182
           LVP AL IYV LV+YAF+R
Sbjct: 172 LVPTALLIYVVLVIYAFTR 190

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544556|ref|XP_003540715.1| PREDICTED: uncharacterized protein LOC100808626 [Glycine max]

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/192 (55%), Positives = 134/192 (69%), Gaps = 19/192 (9%)

Query: 5   MPHRKLSTTT-IHIMALDGIIHVNSLFTLGLFLGL-------TLYPDPAATLVSGSCSAG 56
           +  RK++TTT IHIMALDGI++VNSLFTL LFLG+       TL  D  A     +C+AG
Sbjct: 6   VSRRKMTTTTRIHIMALDGIVNVNSLFTLALFLGITTTSTTNTLIGDDNA-----ACAAG 60

Query: 57  LAIAENLVSCHVYSFSSFLFSSLIASALKQAI----KIANGNREYEERGLSMTN--LRVN 110
            +I+E L++ HVYSFSSFLFSSLIA ALK  I     I +G+   +    +  +   ++N
Sbjct: 61  ASISEGLIAFHVYSFSSFLFSSLIALALKNIINFSKDIKDGDVVLDNNNNNWVHSAAKIN 120

Query: 111 LMVLRFGILVSAVGSVFGCGFLTMALVNMVQIKLGVLGCKSFHTLAAISPLVTLVPLALA 170
            +VLR G LVSA GSVFGCGFL MALV++VQIKLG L C S HT AA++PL+ LVP AL 
Sbjct: 121 TVVLRLGTLVSAFGSVFGCGFLVMALVDLVQIKLGTLACGSPHTFAAVAPLLVLVPTALL 180

Query: 171 IYVGLVLYAFSR 182
           IYV LVLY+F+R
Sbjct: 181 IYVVLVLYSFTR 192

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	182
TAIR|locus:2102742	204	AT3G46890 "AT3G46890" [Arabido	0.950	0.848	0.497	2.6e-31
TAIR|locus:2153689	175	MEE60 "AT5G05950" [Arabidopsis	0.939	0.977	0.454	1.8e-30
TAIR|locus:2079666	189	AT3G07510 "AT3G07510" [Arabido	0.912	0.878	0.343	7e-22

TAIR|locus:2102742 AT3G46890 "AT3G46890" [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 94/189 (49%), Positives = 108/189 (57%)

Query:     8 RKLSTTTIHIMALDGIIHVNSXXXXXXXXXXXXYPD---PAATLVSGS-----C-SA-GL 57
             R L TT IH+ A+DGI++VNS              +   P ++  S +     C SA G 
Sbjct:    14 RLLPTTLIHVTAIDGIVNVNSLFSLALFLGLTTSGNITFPVSSSASENHHLRRCISAKGP 73

Query:    58 AIAENLVSCHVYXXXXXXXXXXXXXXXKQAIKIA----NGN-REYEERGLSMTNLRVNLM 112
             A+AE LVS HVY               KQAI+      NGN  E E R L+    RVNL 
Sbjct:    74 ALAERLVSSHVYSFSLFLFSSLIAMSLKQAIRTTTTTTNGNCLEEEARVLNAGEGRVNLA 133

Query:   113 VLRFGILVSAVGSVFGCGFLTMALVNMVQIKLGVLGCK-SFHTLAAISPLVTLVPLALAI 171
              LR GI+ S V SV GCGFLTMALV++VQIKLG L CK SFH LAAI PLV LVP AL I
Sbjct:   134 ALRVGIVASCVASVLGCGFLTMALVDLVQIKLGPLECKRSFHALAAIVPLVVLVPSALII 193

Query:   172 YVGLVLYAF 180
             YV LVLYAF
Sbjct:   194 YVFLVLYAF 202

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2153689 MEE60 "AT5G05950" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 79/174 (45%), Positives = 102/174 (58%)

Query:    12 TTTIHIMALDGIIHVNSXXXXXXXXXXXXYP-DPAATLVSG-SCSAGLAIAENLVSCHVY 69
             TT+IHI ALDGI++VNS             P DP  +LV+  +C     +AENLV+ HVY
Sbjct:     2 TTSIHITALDGIVNVNSLFTLAVFIGLAWNPTDPDNSLVTDPNCVPTARMAENLVAFHVY 61

Query:    70 XXXXXXXXXXXXXXXKQAIKIANGNREYEERGLSMTNLRVNLMVLRFGILVSAVGSVFGC 129
                            KQA+++   +  +    +      VN   LRFG++ S +GSV GC
Sbjct:    62 SFASFLFSSLIALGLKQAMRLNIASSFHISTRIDPVVYYVNKTALRFGMVTSGLGSVCGC 121

Query:   130 GFLTMALVNMVQIKLGVLGC-KSFHTLAAISPLVTLVPLALAIYVGLVLYAFSR 182
             GFL +AL+N+VQIKLG LGC  S HT AA+ PLV LVP AL IYV L+LYAF+R
Sbjct:   122 GFLMLALINVVQIKLGTLGCGASGHTYAAVVPLVILVPSALFIYVSLMLYAFTR 175

GO:0003674 "molecular_function" evidence=ND

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

TAIR|locus:2079666 AT3G07510 "AT3G07510" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
 Identities = 59/172 (34%), Positives = 92/172 (53%)

Query:    10 LSTTTIHIMALDGIIHVNSXXXXXXXXXXX-XYPDPAATLVSGSCSAGLAIAENLVSCHV 68
             L+TT++H+ ALDG+++VNS              P   +     SC A   +A+ L+   V
Sbjct:    21 LATTSVHVSALDGLVNVNSLFTIAVFVGLSLATPGQHSLEQRSSCDASADVAKKLLVFEV 80

Query:    69 YXXXXXXXXXXXXXXXKQAIKIANGNREYEERGLSMTNLRVNLMVLRFGILVSAVGSVFG 128
                             K A+ + N +++  E    +    +N+ VLR+G++ SAVGSV G
Sbjct:    81 VSFSFFLFSSLVAQGLKLALNLLN-SKDVNE----IFRAHINIKVLRWGMMASAVGSVMG 135

Query:   129 CGFLTMALVNMVQIKLGVLGCKSFHTLAAISPLVTLVPLALAIYVGLVLYAF 180
             C FL +++VN++QI+LG+L C S     A++ LVTLV  AL IY+   +YAF
Sbjct:   136 CLFLMLSMVNVIQIRLGLLSCGSKSAAQAVATLVTLVSSALLIYISTAIYAF 187


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.138   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      182       155   0.00096  105 3  11 22  0.40    31
                                                     30  0.41    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  524 (56 KB)
  Total size of DFA:  113 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.62u 0.18s 11.80t   Elapsed:  00:00:00
  Total cpu time:  11.62u 0.18s 11.80t   Elapsed:  00:00:00
  Start:  Sat May 11 06:57:04 2013   End:  Sat May 11 06:57:04 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.IX.4002.1 hypothetical protein (176 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00