Citrus Sinensis ID: 038610

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370----
MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEESK
cccccEEEEEEccccccccccccccEEEEEEEEEcccccEEEEEccccEEEEEcccccEEEEEccEEEcccccccEEEEEEcccEEEEEEccccEEEEEccccccccccccccccccEEEEEcccccccccccccEEEEEcccccEEEEEccccEEEEcccccccccccccccEEcccccccEEEEEccccEEEEEccccEEEEEccccccccccccccccccEEEcccccccEEEEEccccEEEEEEccccEEEEEccccccccccccccccccccEEEcccccccEEEEEccccEEEEEEccccEEEEEccccccccccccccccccEEEEcccccccccccccccccEEEEEEcccccEEEEEEccccccc
cccccEEEEEEccccccccccccccccccEEHHHHccccEEEEEEcccEEEEEEccccEEccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEEcccccccHHHHcccEEEEEEEcccEEEEEEccccEEEEccccccccccccccccHHHHHcccEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccEEHHHcccccEEEEEEcccEEEEEEccccEEEEEccccccccccccccccccEEEEcccccccccccccccccEEEEEEEcccEEEEEEcccccccc
MASTTSIIawgsgedgqlgignneEREWVCVVKalepykvrsvvagsrnslaicddgktktenipsqvNALSNTKIVQAAIGGWhclavddqgrayawggneygqcgeeperkddtgrilrrdivipqrcapKLIVRQVAAGGTHSVVLTReghvwtwgqpwppgdikqisvpvrvqGLEQVKLIAVGAFHnlalqedgalwawgnneygqlgtgdtqprsqpipvqglsgltlvdiaaggwhstaltddgevygwgrgehgrlgfgdndksskmvpqkvnllagedivqvscggthsvaltrdghifsfgrgdhgrlgygrkvttgqpmevpinipaprnagdgvdRRWIAKLVACGGRHTLAIVEWQTEESK
masttsiiawgsgedgqlgigNNEEREWVCVVKALEPykvrsvvagsrnslaicddgktktenipsqVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGneygqcgeeperkddtgRILRRdivipqrcapKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRlgfgdndkssKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVttgqpmevpinipaprnagdgVDRRWIAKLVACGGRHTLAIVewqteesk
MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEESK
******IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG********TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGT*********IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFG**********QKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQ*****
MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLA***WQ*****
MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQ**********TGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEESK
**STTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEW******
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MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQTEESK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query374 2.2.26 [Sep-21-2011]
Q9FN03440 Ultraviolet-B receptor UV no no 0.823 0.7 0.333 8e-41
Q6PAV2 1057 Probable E3 ubiquitin-pro yes no 0.743 0.263 0.332 3e-38
Q5PQN1 1057 Probable E3 ubiquitin-pro yes no 0.807 0.285 0.304 2e-37
Q4U2R1 4836 E3 ubiquitin-protein liga no no 0.914 0.070 0.297 7e-37
O95714 4834 E3 ubiquitin-protein liga yes no 0.914 0.070 0.295 1e-36
Q5GLZ8 1057 Probable E3 ubiquitin-pro no no 0.820 0.290 0.319 6e-36
Q9VR91 4912 Probable E3 ubiquitin-pro no no 0.925 0.070 0.286 6e-35
Q15034 1050 Probable E3 ubiquitin-pro no no 0.716 0.255 0.325 1e-34
Q8IVU3 1022 Probable E3 ubiquitin-pro no no 0.719 0.263 0.330 7e-34
F2Z461 1003 E3 ISG15--protein ligase no no 0.713 0.266 0.331 9e-34
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function desciption
 Score =  167 bits (424), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 117/351 (33%), Positives = 183/351 (52%), Gaps = 43/351 (12%)

Query: 7   IIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--------- 57
           + +WG GEDGQLG G+ E+R     + AL+ +++ SV  G+ +++A    G         
Sbjct: 36  VCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWG 95

Query: 58  --------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEE 109
                    +     P  + AL   +I Q A G  HCLAV  +G   +WG N+ GQ G  
Sbjct: 96  DFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLG-- 153

Query: 110 PERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWPP--- 164
                DT      D ++PQ+      + ++ VAAG  H+  +T +G ++ WG  W     
Sbjct: 154 ---LGDT-----EDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWG--WGRYGN 203

Query: 165 ---GDIKQISVPVRVQ--GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQP 219
              GD     VP RV   G E++ ++A G  H +++   GAL+ +G ++YGQLG GD + 
Sbjct: 204 LGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLGHGDLED 263

Query: 220 RSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-DKSSKMVPQ 278
              P  ++ LS   +  I+ G  H+ ALT DG++YGWG  + G++G G+N D+ S   P 
Sbjct: 264 HLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQCS---PV 320

Query: 279 KVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
           +V     + +VQVSCG  H++A+T   ++F++GRG +G+LG G  V    P
Sbjct: 321 QVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFP 371
UV-B specific signaling component that acts as UV-B photoreceptor and plays a key role in establishing UV-protective responses in plants. Upon UV-B irradiation, UVR8 undergoes an immediate switch from homodimer to monomer, accumulates in the nucleus, interacts with the photomorphogenic repressor COP1 and regulates the expression of the transcription factor HY5 by associating with chromatin (through histone H2B binding) in the HY5 promoter region. UVR8 is involved in controlling aspects of leaf growth and morphogenesis in response to UV-B, is required for normal progression of endocycle and has a regulatory role in stomatal differentiation. Is required for plant circadian clock response to photomorphogenic UV-B light, partly through the transcriptional activation of responsive clock genes. Promotes photosynthetic efficiency at elevated levels of UV-B. Plays a role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway. The two tryptophans, Trp-285 and Trp-233, serve collectively as the UV-B chromophore.
Arabidopsis thaliana (taxid: 3702)
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function description
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 Back     alignment and function description
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function description
>sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 Back     alignment and function description
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 Back     alignment and function description
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 Back     alignment and function description
>sp|Q8IVU3|HERC6_HUMAN Probable E3 ubiquitin-protein ligase HERC6 OS=Homo sapiens GN=HERC6 PE=2 SV=2 Back     alignment and function description
>sp|F2Z461|HERC6_MOUSE E3 ISG15--protein ligase Herc6 OS=Mus musculus GN=Herc6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query374
224127630392 predicted protein [Populus trichocarpa] 1.0 0.954 0.862 0.0
255551398393 Ran GTPase binding protein, putative [Ri 1.0 0.951 0.854 0.0
356573964395 PREDICTED: probable E3 ubiquitin-protein 0.997 0.944 0.830 0.0
449447492390 PREDICTED: LOW QUALITY PROTEIN: probable 0.989 0.948 0.825 0.0
449481449390 PREDICTED: LOW QUALITY PROTEIN: probable 0.989 0.948 0.825 0.0
90657578393 hypothetical protein [Cleome spinosa] 0.986 0.938 0.808 0.0
42563438393 regulator of chromosome condensation dom 0.991 0.944 0.798 1e-178
225451993395 PREDICTED: E3 ubiquitin-protein ligase H 0.997 0.944 0.816 1e-177
297832882393 regulator of chromosome condensation fam 0.991 0.944 0.796 1e-177
15237253396 regulator of chromosome condensation rep 0.997 0.941 0.789 1e-176
>gi|224127630|ref|XP_002329325.1| predicted protein [Populus trichocarpa] gi|222870779|gb|EEF07910.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  678 bits (1749), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/392 (86%), Positives = 355/392 (90%), Gaps = 18/392 (4%)

Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK-- 58
           MA+ +S+IAWGSGEDGQLGIGNNEE+EWVC+VKALEPYKVRSVVAGSRNSLAICDDGK  
Sbjct: 1   MATESSVIAWGSGEDGQLGIGNNEEKEWVCIVKALEPYKVRSVVAGSRNSLAICDDGKLF 60

Query: 59  ---------------TKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                          TKTENIPSQV AL+N  IVQAAIGGWHCLAVDDQGRAYAWGGNEY
Sbjct: 61  TWGWNQRGTLGHPPETKTENIPSQVKALANVNIVQAAIGGWHCLAVDDQGRAYAWGGNEY 120

Query: 104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
           GQCGEEPERKDDTGR LRRDIVIPQRCA KL+VRQVAAGGTHSVVLTREGHVW+WGQPWP
Sbjct: 121 GQCGEEPERKDDTGRPLRRDIVIPQRCASKLVVRQVAAGGTHSVVLTREGHVWSWGQPWP 180

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
           PGDIKQISVPVRVQGLE+V+LIAVGAFHNLALQEDG LWAWGNNEYGQLGTGDTQPRSQP
Sbjct: 181 PGDIKQISVPVRVQGLERVRLIAVGAFHNLALQEDGTLWAWGNNEYGQLGTGDTQPRSQP 240

Query: 224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
           I VQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQ+VNLL
Sbjct: 241 ITVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQRVNLL 300

Query: 284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
            GEDIVQVSCGGTHSVALTRDG +++FGRGDHGRLGYGRKVTTGQPMEVPI+IP P+N  
Sbjct: 301 VGEDIVQVSCGGTHSVALTRDGRMYTFGRGDHGRLGYGRKVTTGQPMEVPIDIPPPKNLT 360

Query: 344 DGVDR-RWIAKLVACGGRHTLAIVEWQTEESK 374
           D  D  RWIAKLVA GGRHTLAIVEW T +SK
Sbjct: 361 DSGDAGRWIAKLVASGGRHTLAIVEWHTGDSK 392

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255551398|ref|XP_002516745.1| Ran GTPase binding protein, putative [Ricinus communis] gi|223544118|gb|EEF45643.1| Ran GTPase binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356573964|ref|XP_003555124.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
>gi|449447492|ref|XP_004141502.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449481449|ref|XP_004156186.1| PREDICTED: LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|90657578|gb|ABD96878.1| hypothetical protein [Cleome spinosa] Back     alignment and taxonomy information
>gi|42563438|ref|NP_186900.3| regulator of chromosome condensation domain-containing protein [Arabidopsis thaliana] gi|110735845|dbj|BAE99899.1| hypothetical protein [Arabidopsis thaliana] gi|332640299|gb|AEE73820.1| regulator of chromosome condensation domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225451993|ref|XP_002283479.1| PREDICTED: E3 ubiquitin-protein ligase HERC2 [Vitis vinifera] gi|296087299|emb|CBI33673.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297832882|ref|XP_002884323.1| regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata] gi|297330163|gb|EFH60582.1| regulator of chromosome condensation family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15237253|ref|NP_197108.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] gi|9755650|emb|CAC01803.1| UVB-resistance protein-like [Arabidopsis thaliana] gi|114213505|gb|ABI54335.1| At5g16040 [Arabidopsis thaliana] gi|332004857|gb|AED92240.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query374
TAIR|locus:2076889393 AT3G02510 "AT3G02510" [Arabido 0.991 0.944 0.798 4.4e-171
TAIR|locus:2146142396 AT5G16040 "AT5G16040" [Arabido 0.997 0.941 0.789 3.6e-169
TAIR|locus:2163986440 UVR8 "UVB-RESISTANCE 8" [Arabi 0.826 0.702 0.345 1.9e-44
UNIPROTKB|E1C4H7 4863 HERC1 "Uncharacterized protein 0.810 0.062 0.283 6.1e-31
ZFIN|ZDB-GENE-070718-6 4832 herc2 "hect domain and RLD 2" 0.914 0.070 0.295 1.1e-37
UNIPROTKB|E1BW48 4841 HERC2 "Uncharacterized protein 0.914 0.070 0.291 4.2e-36
UNIPROTKB|E1C8K2 4841 HERC2 "Uncharacterized protein 0.914 0.070 0.291 4.2e-36
UNIPROTKB|E2RDC2 4837 HERC2 "Uncharacterized protein 0.914 0.070 0.295 2.3e-37
UNIPROTKB|O95714 4834 HERC2 "E3 ubiquitin-protein li 0.914 0.070 0.292 2.9e-37
UNIPROTKB|D4ACN3 4779 Herc2 "Protein Herc2" [Rattus 0.914 0.071 0.295 2.3e-37
TAIR|locus:2076889 AT3G02510 "AT3G02510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1663 (590.5 bits), Expect = 4.4e-171, P = 4.4e-171
 Identities = 314/393 (79%), Positives = 338/393 (86%)

Query:     1 MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
             M + TSIIAWGSGEDGQLGIG NEE+EW CVV+ALEPY VRSVV+GSRNSLAICDDG   
Sbjct:     1 MVTATSIIAWGSGEDGQLGIGTNEEKEWACVVEALEPYSVRSVVSGSRNSLAICDDGTMF 60

Query:    58 --------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                           +TKTENIPS+V AL+N KI QAAIGGWHCLAVDDQGRAYAWGGNEY
Sbjct:    61 TWGWNQRGTLGHQPETKTENIPSRVKALANVKITQAAIGGWHCLAVDDQGRAYAWGGNEY 120

Query:   104 GQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQPWP 163
             GQCGEEP  KD+ GR +RRDIVIP+RCAPKL VRQVAAGGTHSVVLTREGHVWTWGQPWP
Sbjct:   121 GQCGEEP-LKDEMGRPVRRDIVIPKRCAPKLTVRQVAAGGTHSVVLTREGHVWTWGQPWP 179

Query:   164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
             PGDIKQISVPVRVQGLE V+LIAVGAFHNLAL+EDG L AWGNNEYGQLGTGDTQP S P
Sbjct:   180 PGDIKQISVPVRVQGLENVRLIAVGAFHNLALEEDGRLLAWGNNEYGQLGTGDTQPTSHP 239

Query:   224 IPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLL 283
             +PVQGL  LTLVDIAAGGWHSTALTD GEVYGWGRGEHGRLG GDNDKSSKMVPQKVNLL
Sbjct:   240 VPVQGLDDLTLVDIAAGGWHSTALTDKGEVYGWGRGEHGRLGLGDNDKSSKMVPQKVNLL 299

Query:   284 AGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAG 343
             A EDI+QVSCGGTHSVALTRDG IFSFGRGDHGRLGYGRKVTTGQP+E+PI IP P  + 
Sbjct:   300 AEEDIIQVSCGGTHSVALTRDGRIFSFGRGDHGRLGYGRKVTTGQPLELPIKIPPPEGSF 359

Query:   344 DGVDR----RWIAKLVACGGRHTLAIVEWQTEE 372
             +  D     +W AK +ACGGRHTLAIVEW++++
Sbjct:   360 NHTDEEEEGKWSAKSIACGGRHTLAIVEWKSDD 392
GO:0003682 "chromatin binding" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0005886 "plasma membrane" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0008536 "Ran GTPase binding" evidence=ISS
TAIR|locus:2146142 AT5G16040 "AT5G16040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1C4H7 HERC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070718-6 herc2 "hect domain and RLD 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BW48 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C8K2 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RDC2 HERC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O95714 HERC2 "E3 ubiquitin-protein ligase HERC2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|D4ACN3 Herc2 "Protein Herc2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query374
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 3e-42
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-20
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 6e-16
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 5e-15
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-14
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 7e-08
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 3e-07
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 6e-07
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 2e-06
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 5e-06
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 7e-06
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 9e-06
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 2e-04
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =  153 bits (388), Expect = 3e-42
 Identities = 100/387 (25%), Positives = 160/387 (41%), Gaps = 71/387 (18%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTKTENIP 65
           S+ +WGS    +LG+GN+E                                      N  
Sbjct: 69  SVYSWGSNGMNELGLGNDE------------------------------TKVDRPQLNPF 98

Query: 66  SQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCG--EEPERKDDTGRILRRD 123
            ++       I++ A GG H L +D  G  Y+WG N+ G  G     +  D    I+  D
Sbjct: 99  GRI---DKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFD 155

Query: 124 ----------IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQ-------PW---P 163
                     +         L V ++A G   SV+LT +G V++WG              
Sbjct: 156 DYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKN 215

Query: 164 PGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLGTGDTQPRSQP 223
                    P++V   + +  +A GA H +AL  +G ++ WG+N+ GQLG   ++     
Sbjct: 216 SQKTSIQFTPLKV-PKKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLV 274

Query: 224 IPVQGLSGLTLVD-IAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMV--PQKV 280
           + V     +  +  +A G  HS AL +DGE+Y WG    G+LG G + +   +   P   
Sbjct: 275 VLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYK 334

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
            LL+G  I  +S G +HS+ L +DG +++FGRGD G+LG   ++T           P   
Sbjct: 335 QLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITIDVS------TPTKL 388

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
           +    +      + VACG  H +A  +
Sbjct: 389 SVAIKL------EQVACGTHHNIARTD 409

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 374
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.94
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.91
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.9
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.85
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.36
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.35
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.29
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.27
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.13
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 98.99
KOG3669 705 consensus Uncharacterized conserved protein, conta 95.62
KOG3669 705 consensus Uncharacterized conserved protein, conta 95.24
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 92.1
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 89.94
KOG1274 933 consensus WD40 repeat protein [General function pr 89.78
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 89.2
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 89.12
KOG0315311 consensus G-protein beta subunit-like protein (con 88.82
PHA03098534 kelch-like protein; Provisional 87.52
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 86.75
KOG1274 933 consensus WD40 repeat protein [General function pr 86.19
PF07569219 Hira: TUP1-like enhancer of split; InterPro: IPR01 85.8
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 84.38
PHA02713557 hypothetical protein; Provisional 83.93
KOG4441571 consensus Proteins containing BTB/POZ and Kelch do 82.38
KOG0646 476 consensus WD40 repeat protein [General function pr 81.65
smart0070635 TECPR Beta propeller repeats in Physarum polycepha 80.13
smart0070635 TECPR Beta propeller repeats in Physarum polycepha 80.09
COG4257353 Vgb Streptogramin lyase [Defense mechanisms] 80.01
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=9.5e-48  Score=340.52  Aligned_cols=347  Identities=31%  Similarity=0.536  Sum_probs=269.8

Q ss_pred             CCCcEEEeeCCCCCCcCCCCCcce-eeeEEeecc--CCCceEEEecCCcceEEEecCCC---------------e-----
Q 038610            3 STTSIIAWGSGEDGQLGIGNNEER-EWVCVVKAL--EPYKVRSVVAGSRNSLAICDDGK---------------T-----   59 (374)
Q Consensus         3 ~~g~v~~wG~n~~GqLG~~~~~~~-~~p~~v~~~--~~~~i~~v~~g~~~~~~l~~~g~---------------~-----   59 (374)
                      .-..||+||+|..+|||++..... ..|+..++.  ....|++++||..|+++|+.||.               .     
T Consensus        66 ~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~  145 (476)
T COG5184          66 KMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDIC  145 (476)
T ss_pred             heeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcccccccccccccc
Confidence            346799999999999999987655 889888887  56799999999999999999996               1     


Q ss_pred             ------------eeeecCeeecc----cCCCCeEEEeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecc
Q 038610           60 ------------KTENIPSQVNA----LSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRD  123 (374)
Q Consensus        60 ------------~~~~~p~~~~~----~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~  123 (374)
                                  .-...|..++.    .+..+|++++||++++++|+++|+||+||....+.++.+.........    .
T Consensus       146 ~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~----~  221 (476)
T COG5184         146 DQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTS----I  221 (476)
T ss_pred             cccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccccce----e
Confidence                        12456777766    234579999999999999999999999999998888888554433222    2


Q ss_pred             cccccccCCCCcEEEEEeCCCeEEEEecCCcEEEecCC----CCCCCccCcccceEeeCC---CCeeEEEECCceEEEEe
Q 038610          124 IVIPQRCAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP----WPPGDIKQISVPVRVQGL---EQVKLIAVGAFHNLALQ  196 (374)
Q Consensus       124 ~~~p~~~~~~~~i~~i~~g~~~~~~lt~~g~v~~~G~~----~~~~~~~~~~~p~~i~~~---~~i~~i~~g~~~~~~l~  196 (374)
                      ...|..++ ...|+++++|.+|.++|+++|++|.||++    ++....+....+..+...   ..|+.|+||.+|+++|+
T Consensus       222 ~~~p~~v~-~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~  300 (476)
T COG5184         222 QFTPLKVP-KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALD  300 (476)
T ss_pred             eeeeeecC-chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEc
Confidence            34444443 67899999999999999999999999998    333333444444444333   55788999999999999


Q ss_pred             cCCcEEEEecCCCCCCCCCCCC----CCccceeeccCCCCcEEEEEecCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCC
Q 038610          197 EDGALWAWGNNEYGQLGTGDTQ----PRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKS  272 (374)
Q Consensus       197 ~~g~v~~~G~n~~gqlG~~~~~----~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~  272 (374)
                      ++|+||+||.|-+||||.++..    ....|.....+....|..|++|..|+++|..+|.||+||++..+|||.......
T Consensus       301 ~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~qlg~~~~~~~  380 (476)
T COG5184         301 EDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITI  380 (476)
T ss_pred             CCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccccCccccee
Confidence            9999999999999999998321    223344444555566999999999999999999999999999999999885455


Q ss_pred             ccccceEeecCCCCcEEEEEccCCeEEEEecCCCEEEEeCCCCCccCCCCCCCC-CCceeeeeecCCCCCCCCCCCccee
Q 038610          273 SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTT-GQPMEVPINIPAPRNAGDGVDRRWI  351 (374)
Q Consensus       273 ~~~~p~~v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqLG~g~~~~~-~~p~~v~~~~~~~~~~~~~~~~~~~  351 (374)
                      ....|+++...  .++.+++||..|.++.+.+|+||+||+|++||||.|+.... ..|+.++.++..          ...
T Consensus       381 ~~~~~~~ls~~--~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~~~~~----------~~~  448 (476)
T COG5184         381 DVSTPTKLSVA--IKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQPLLS----------GHN  448 (476)
T ss_pred             ecCCccccccc--cceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhccccccccccccC----------CCc
Confidence            55566665543  67999999999999999999999999999999999987553 444444322111          122


Q ss_pred             EEEEeeCCCceEEEE
Q 038610          352 AKLVACGGRHTLAIV  366 (374)
Q Consensus       352 i~~v~~G~~ht~~l~  366 (374)
                      ++..-||.+.+++.-
T Consensus       449 ~i~~g~~~~~~v~~~  463 (476)
T COG5184         449 IILAGYGNQFSVIEE  463 (476)
T ss_pred             eEEeccCcceEEEec
Confidence            666777766666543

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins Back     alignment and domain information
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins Back     alignment and domain information
>COG4257 Vgb Streptogramin lyase [Defense mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query374
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 5e-42
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 4e-29
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 6e-42
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 5e-29
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 1e-41
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 7e-29
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 2e-41
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 1e-28
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 9e-38
3kci_A 389 The Third Rld Domain Of Herc2 Length = 389 7e-13
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 1e-23
1a12_A 413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 1e-16
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 1e-23
1i2m_B 402 Ran-Rcc1-So4 Complex Length = 402 1e-16
3of7_A473 The Crystal Structure Of Prp20p From Saccharomyces 3e-20
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 8e-15
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 6e-12
1jtd_B273 Crystal Structure Of Beta-Lactamase Inhibitor Prote 3e-13
1jtd_B273 Crystal Structure Of Beta-Lactamase Inhibitor Prote 1e-06
3qhy_B282 Structural, Thermodynamic And Kinetic Analysis Of T 5e-13
3qhy_B282 Structural, Thermodynamic And Kinetic Analysis Of T 1e-06
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure 
Iteration: 1

 Score =  168 bits (425), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 118/357 (33%), Positives = 185/357 (51%), Gaps = 43/357 (12%)
Query: 1   MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDG--- 57
           + S   + +WG GEDGQLG G+ E+R     + AL+ +++ SV  G+ +++A    G   
Sbjct: 19  LLSGDIVCSWGRGEDGQLGHGDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEV 78
Query: 58  --------------KTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEY 103
                          +     P  + AL   +I Q A G  HCLAV  +G   +WG N+ 
Sbjct: 79  YSWGWGDFGRLGHGNSSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQN 138
Query: 104 GQCGEEPERKDDTGRILRRDIVIPQR--CAPKLIVRQVAAGGTHSVVLTREGHVWTWGQP 161
           GQ G       DT      D ++PQ+      + ++ VAAG  H+  +T +G ++ WG  
Sbjct: 139 GQLG-----LGDT-----EDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDLYGWG-- 186
Query: 162 WPP------GDIKQISVPVRVQ--GLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQLG 213
           W        GD     VP RV   G E++ ++A G  H +++   GAL+ +G ++YGQLG
Sbjct: 187 WGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTYGWSKYGQLG 246
Query: 214 TGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDN-DKS 272
            GD +    P  ++ LS   +  I+ G  H+ ALT DG++YGWG  + G++G G+N D+ 
Sbjct: 247 HGDLEDHLIPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWGWNKFGQVGVGNNLDQC 306
Query: 273 SKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQP 329
           S   P +V     + +VQVSCG  H++A+T   ++F++GRG +G+LG G  V    P
Sbjct: 307 S---PVQVRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFP 360
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii In Complex With Tem-1 Beta-Lactamase Length = 273 Back     alignment and structure
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii In Complex With Tem-1 Beta-Lactamase Length = 273 Back     alignment and structure
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The Picomolar Binding Affinity Interaction Of The Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With Class A Beta-Lactamases Length = 282 Back     alignment and structure
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The Picomolar Binding Affinity Interaction Of The Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With Class A Beta-Lactamases Length = 282 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query374
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-112
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-80
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 6e-54
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-111
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 6e-87
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-84
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-73
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 9e-60
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-04
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-100
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 9e-86
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 3e-79
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 5e-76
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 2e-68
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-54
1a12_A 413 RCC1, regulator of chromosome condensation 1; guan 1e-13
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 4e-06
3mvd_K423 Regulator of chromosome condensation; protein-DNA 3e-94
3mvd_K423 Regulator of chromosome condensation; protein-DNA 3e-76
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 2e-75
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 2e-66
3mvd_K423 Regulator of chromosome condensation; protein-DNA 6e-51
3mvd_K423 Regulator of chromosome condensation; protein-DNA 3e-06
3of7_A473 Regulator of chromosome condensation; beta-propell 9e-92
3of7_A473 Regulator of chromosome condensation; beta-propell 3e-90
3of7_A 473 Regulator of chromosome condensation; beta-propell 4e-76
3of7_A 473 Regulator of chromosome condensation; beta-propell 7e-61
3of7_A 473 Regulator of chromosome condensation; beta-propell 6e-46
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 3e-57
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 9e-51
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 7e-37
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
 Score =  332 bits (853), Expect = e-112
 Identities = 110/387 (28%), Positives = 174/387 (44%), Gaps = 52/387 (13%)

Query: 9   AWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK---------- 58
            WG    GQLG     + +     +AL   +   ++ G +   A+  DGK          
Sbjct: 24  GWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGG 83

Query: 59  ------TKTENIPSQVNALSNTKIVQAAI--GGWHCLAVDDQGRAYAWGGNEYGQCGEEP 110
                 T++ + P+ + ++ +  I + A+  GG HCLA+  +G  Y+WG  E G+ G   
Sbjct: 84  RLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLG--- 140

Query: 111 ERKDDTGRILRRDIVIPQRCA--PKLIVRQVAAGGTHSVVLTREGHVWTWGQ----PWPP 164
                     R     P+       + V  VAAGG HS  +T  G ++TWG+        
Sbjct: 141 ---HGN----RSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGH 193

Query: 165 GDIKQISVPVRVQGLEQVKLIAV----GAFHNLALQEDGALWAWGNNEYGQLGTGDTQPR 220
            D +    P  V+ L+  +++ +    G    L L +D  +W+WG+ +YG+LG G +   
Sbjct: 194 SDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGC 253

Query: 221 SQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKV 280
             P+ +  L+GL +V +  G   S ALT  G VY WG+G++ RLG G +D      P++V
Sbjct: 254 KVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVR--RPRQV 311

Query: 281 NLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPR 340
             L G+ ++ ++ G  H V  T DG ++++G  D G+LG G      +P  V        
Sbjct: 312 QGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVA------- 364

Query: 341 NAGDGVDRRWIAKLVACGGRHTLAIVE 367
            A  G         VACG  HTLA   
Sbjct: 365 -ALQGKK----VNRVACGSAHTLAWST 386
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query374
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.69
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.26
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 95.13
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 95.11
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 94.51
3no0_A276 DNA gyrase subunit A; DNA topology, topoisomerase, 93.44
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 93.12
1k3i_A 656 Galactose oxidase precursor; blade beta propeller, 92.23
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 89.95
3uc1_A327 DNA gyrase subunit A; DNA binding protein, topoiso 88.95
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 84.76
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 84.38
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 83.21
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 82.89
1suu_A312 DNA gyrase subunit A; topoisomerase,DNA gyrase, be 81.14
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 81.11
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 81.09
1suu_A312 DNA gyrase subunit A; topoisomerase,DNA gyrase, be 80.2
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=7.4e-70  Score=506.19  Aligned_cols=345  Identities=32%  Similarity=0.593  Sum_probs=298.7

Q ss_pred             CCCCCcEEEeeCCCCCCcCCCCCcceeeeEEeeccCCCceEEEecCCcceEEEecCCC----------------eeeeec
Q 038610            1 MASTTSIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICDDGK----------------TKTENI   64 (374)
Q Consensus         1 l~~~g~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~v~~g~~~~~~l~~~g~----------------~~~~~~   64 (374)
                      |+++|+||+||.|.+||||.+..+....|.++..+...++++|+||..|+++|+++|+                ......
T Consensus        16 l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~   95 (389)
T 3kci_A           16 FQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGTESVST   95 (389)
T ss_dssp             -----CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEE
T ss_pred             ECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccC
Confidence            6789999999999999999999988999999999888899999999999999999999                234467


Q ss_pred             CeeecccCCCC--eEEEeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccC--CCCcEEEEE
Q 038610           65 PSQVNALSNTK--IVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCA--PKLIVRQVA  140 (374)
Q Consensus        65 p~~~~~~~~~~--i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~--~~~~i~~i~  140 (374)
                      |..+..+.+..  +++|+||.+|+++|+++|+||+||.|.+||||.+...          ....|..+.  ...+|++|+
T Consensus        96 p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~----------~~~~p~~v~~l~~~~i~~va  165 (389)
T 3kci_A           96 PTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRS----------PCDRPRVIESLRGIEVVDVA  165 (389)
T ss_dssp             EEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCC----------CEEEEEECGGGTTSCEEEEE
T ss_pred             CEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCc----------cCcCCeEecccCCCeEEEEE
Confidence            77777776654  4788999999999999999999999999999998764          233444443  256899999


Q ss_pred             eCCCeEEEEecCCcEEEecCC----CCCCCccCcccceEeeCC--CCeeEEEECC--ceEEEEecCCcEEEEecCCCCCC
Q 038610          141 AGGTHSVVLTREGHVWTWGQP----WPPGDIKQISVPVRVQGL--EQVKLIAVGA--FHNLALQEDGALWAWGNNEYGQL  212 (374)
Q Consensus       141 ~g~~~~~~lt~~g~v~~~G~~----~~~~~~~~~~~p~~i~~~--~~i~~i~~g~--~~~~~l~~~g~v~~~G~n~~gql  212 (374)
                      ||..|+++|+++|+||+||.+    ++.+.......|.+++.+  .+|++|+||.  .|+++|+++|+||+||.|.+|||
T Consensus       166 ~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqL  245 (389)
T 3kci_A          166 AGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKL  245 (389)
T ss_dssp             ECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTT
T ss_pred             eCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCC
Confidence            999999999999999999998    455566666778888766  5799999995  89999999999999999999999


Q ss_pred             CCCCCCCCccceeeccCCCCcEEEEEecCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceEeecCCCCcEEEEE
Q 038610          213 GTGDTQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQKVNLLAGEDIVQVS  292 (374)
Q Consensus       213 G~~~~~~~~~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~v~~~~~~~i~~i~  292 (374)
                      |.+.......|.+++.+.+.+|++|+||.+|+++|+++|+||+||.|.+||||.+.  ......|.++..+.+.+|++|+
T Consensus       246 G~g~~~~~~~p~~v~~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~--~~~~~~P~~v~~l~~~~v~~ia  323 (389)
T 3kci_A          246 GRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGS--DDHVRRPRQVQGLQGKKVIAIA  323 (389)
T ss_dssp             SSSSCCCEEEEEECGGGTTSCEEEEEEETTEEEEEETTSCEEEEECCGGGTTCSSS--CCCEEEEEECGGGTTCCEEEEE
T ss_pred             CCCCCCCccccEEecccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCCCCCCCCCCC--CccccCCeEeccCCCCCEEEEE
Confidence            99998888899999988888899999999999999999999999999999999998  6777899999988888999999


Q ss_pred             ccCCeEEEEecCCCEEEEeCCCCCccCCCCCCCCCCceeeeeecCCCCCCCCCCCcceeEEEEeeCCCceEEEEeec
Q 038610          293 CGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGGRHTLAIVEWQ  369 (374)
Q Consensus       293 ~G~~~~~~lt~~g~vy~~G~n~~gqLG~g~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~i~~v~~G~~ht~~l~~~~  369 (374)
                      ||.+|+++|+++|+||+||.|.+||||+|.......|++++..            .+.+|++|+||.+||+||++.+
T Consensus       324 ~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~~------------~~~~v~~va~G~~ht~al~~~~  388 (389)
T 3kci_A          324 TGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQRPRLVAAL------------QGKKVNRVACGSAHTLAWSTSK  388 (389)
T ss_dssp             ECSSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEECGGG------------TTSCCCEEEEETTEEEEECC--
T ss_pred             eccCeEEEECCCCCEEEeeCCCCCcCCCCCCCCccCcEEeccc------------CCCCEEEEEecCCcEEEEecCC
Confidence            9999999999999999999999999999998877666665321            1335899999999999998764
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 374
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-34
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 3e-30
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-29
d1a12a_ 401 b.69.5.1 (A:) Regulator of chromosome condensation 5e-21
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-17
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 3e-14
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 5e-14
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 6e-06
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (324), Expect = 1e-34
 Identities = 72/334 (21%), Positives = 127/334 (38%), Gaps = 36/334 (10%)

Query: 6   SIIAWGSGEDGQLGIGNNEEREWVCVVKALEPYKVRSVVAGSRNSLAICD---------- 55
            + ++G  ++G LG   + E   +   K     KV  V AG  ++ A+ D          
Sbjct: 67  QVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSF 126

Query: 56  -------DGKTKTENIPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGE 108
                        +     V    +  +V+ A G  H + +   G  Y  G  E GQ G 
Sbjct: 127 RDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGEQGQLGR 186

Query: 109 EPERKDDTGRILRRDIVIPQRCAP--------KLIVRQVAAGGTHSVVLTREGHVWTW-- 158
            PE   + G     + ++  +C           +  +    G   +  ++ EGHV+ +  
Sbjct: 187 VPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGL 246

Query: 159 ------GQPWPPGDIKQISVPVRVQGLEQVKLIAVGAFHNLALQEDGALWAWGNNEYGQL 212
                 G P         ++       +     + G  H + +  +G  ++ G  EYG+L
Sbjct: 247 SNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRL 306

Query: 213 GTGD-TQPRSQPIPVQGLSGLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDK 271
           G G+  + +S P  +  L  +    +A G     A+T DG V+ WG G + +LG G ++ 
Sbjct: 307 GLGEGAEEKSIPTLISRLPAV--SSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDED 364

Query: 272 SSKMVPQKVNLLAGEDIVQVSCGGTHSVALTRDG 305
           +   V      L    ++ VS GG H+V L +D 
Sbjct: 365 AWSPVEMMGKQLENRVVLSVSSGGQHTVLLVKDK 398
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query374
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 97.78
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 95.36
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 91.4
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 89.55
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 86.87
d1suua_304 DNA gyrase A C-terminal domain {Lyme disease spiro 84.16
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 81.17
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-58  Score=431.71  Aligned_cols=349  Identities=26%  Similarity=0.434  Sum_probs=280.5

Q ss_pred             CCCCCcEEEeeCCCCCCcCCCCCc-ceeeeEEeeccCCCceEEEecCCcceEEEecCCCee----------------eee
Q 038610            1 MASTTSIIAWGSGEDGQLGIGNNE-EREWVCVVKALEPYKVRSVVAGSRNSLAICDDGKTK----------------TEN   63 (374)
Q Consensus         1 l~~~g~v~~wG~n~~GqLG~~~~~-~~~~p~~v~~~~~~~i~~v~~g~~~~~~l~~~g~~~----------------~~~   63 (374)
                      ++.+|+||+||.|.+||||++... .+..|.+|+.+.  +|++|+||..|+++|+++|+..                ...
T Consensus        11 ~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~~--~i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG~g~~~~~~   88 (401)
T d1a12a_          11 STEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGS   88 (401)
T ss_dssp             CCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCSS--CEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTG
T ss_pred             ECCCCEEEEEeCCCCCCCCCCCCCceeccCEEeCCCC--CeEEEEeCCCEEEEEeCCCEEEEEeCCCCCCCCcccccccc
Confidence            578999999999999999999764 578888987754  6999999999999999999811                122


Q ss_pred             cCeeecccCCCCeEEEeccCceeEEEeCCCcEEEEeCCCCCCcCCCCCCCCCCcceeecccccccccCCCCcEEEEEeCC
Q 038610           64 IPSQVNALSNTKIVQAAIGGWHCLAVDDQGRAYAWGGNEYGQCGEEPERKDDTGRILRRDIVIPQRCAPKLIVRQVAAGG  143 (374)
Q Consensus        64 ~p~~~~~~~~~~i~~i~~G~~~~~~lt~~g~v~~wG~n~~gqlg~~~~~~~~~~~~~~~~~~~p~~~~~~~~i~~i~~g~  143 (374)
                      .|.+.......+|++|+||..|+++++++|+||+||.+..++.+........       ....+.......+|++|+||.
T Consensus        89 ~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~i~~i~~g~  161 (401)
T d1a12a_          89 EMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMK-------KSMVPVQVQLDVPVVKVASGN  161 (401)
T ss_dssp             GGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTB-------CEEEEEEECCSSCEEEEEECS
T ss_pred             cccccccccccceeeecccccceeeccccccceeccccccccccccccCCcc-------ccceeeeeccCCceeEEEecc
Confidence            3344444556789999999999999999999999998877665544332221       112222233467899999999


Q ss_pred             CeEEEEecCCcEEEecCCCC----CCCc-----------cCcccceEeeC-------CCCeeEEEECCceEEEEecCCcE
Q 038610          144 THSVVLTREGHVWTWGQPWP----PGDI-----------KQISVPVRVQG-------LEQVKLIAVGAFHNLALQEDGAL  201 (374)
Q Consensus       144 ~~~~~lt~~g~v~~~G~~~~----~~~~-----------~~~~~p~~i~~-------~~~i~~i~~g~~~~~~l~~~g~v  201 (374)
                      .|+++++++|++|+||.+..    ....           .....|..+..       ..+|.+|+||.+|+++|+.+|+|
T Consensus       162 ~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~v  241 (401)
T d1a12a_         162 DHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHV  241 (401)
T ss_dssp             SEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCCE
T ss_pred             cceeeeecCCcccccccCCccccCCCCccccccCCccccccccccceeeccccCCCCCceEEEEEecCCeEEEEecCCeE
Confidence            99999999999999998721    1100           01112333321       15799999999999999999999


Q ss_pred             EEEecCCCCCCCCCCCCCCccceeeccCC--CCcEEEEEecCCeEEEEecCCCEEEEeCCCCCCCCCCCCCCCccccceE
Q 038610          202 WAWGNNEYGQLGTGDTQPRSQPIPVQGLS--GLTLVDIAAGGWHSTALTDDGEVYGWGRGEHGRLGFGDNDKSSKMVPQK  279 (374)
Q Consensus       202 ~~~G~n~~gqlG~~~~~~~~~p~~~~~~~--~~~i~~i~~G~~~~~~lt~~g~vy~wG~n~~gqlG~~~~~~~~~~~p~~  279 (374)
                      |+||.|.+|++|.........+..+..+.  ...++++++|..|+++++++|+||+||.|.+||||.+.. ......|++
T Consensus       242 ~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~-~~~~~~P~~  320 (401)
T d1a12a_         242 YGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEG-AEEKSIPTL  320 (401)
T ss_dssp             EEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTT-CCCEEEEEE
T ss_pred             eeecccceecccccccccceeccccccccccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCcc-cccccCCEE
Confidence            99999999999998887777666665443  357999999999999999999999999999999999874 566677888


Q ss_pred             eecCCCCcEEEEEccCCeEEEEecCCCEEEEeCCCCCccCCCCCCCCCCceeeeeecCCCCCCCCCCCcceeEEEEeeCC
Q 038610          280 VNLLAGEDIVQVSCGGTHSVALTRDGHIFSFGRGDHGRLGYGRKVTTGQPMEVPINIPAPRNAGDGVDRRWIAKLVACGG  359 (374)
Q Consensus       280 v~~~~~~~i~~i~~G~~~~~~lt~~g~vy~~G~n~~gqLG~g~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~i~~v~~G~  359 (374)
                      ++.+  .+|++|+||.+|++||+++|+||+||+|.+||||+|+..+...|++++...          .++.+|++|+||.
T Consensus       321 i~~~--~~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~~~~~~P~~v~~~~----------~~~~~v~~v~~G~  388 (401)
T d1a12a_         321 ISRL--PAVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQ----------LENRVVLSVSSGG  388 (401)
T ss_dssp             CCSS--SSEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTT----------TTTEEEEEEEECS
T ss_pred             cCCC--CCeEEEEeeCCEEEEEeCCCeEEEEecCCCCCCCCCCCCCEecCEEeeccC----------CCCCEEEEEEEcc
Confidence            8765  579999999999999999999999999999999999988777776654332          2366899999999


Q ss_pred             CceEEEEeeccc
Q 038610          360 RHTLAIVEWQTE  371 (374)
Q Consensus       360 ~ht~~l~~~~~~  371 (374)
                      +||++|+++++.
T Consensus       389 ~hs~~l~~d~~~  400 (401)
T d1a12a_         389 QHTVLLVKDKEQ  400 (401)
T ss_dssp             SEEEEEEEECSC
T ss_pred             ceEEEEEECCcc
Confidence            999999999864
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1suua_ b.68.10.1 (A:) DNA gyrase A C-terminal domain {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure