Citrus Sinensis ID: 038854
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 353 | 2.2.26 [Sep-21-2011] | |||||||
| Q94ID7 | 370 | Geranylgeranyl pyrophosph | N/A | no | 1.0 | 0.954 | 0.694 | 1e-145 | |
| Q42698 | 357 | Geranylgeranyl pyrophosph | N/A | no | 0.932 | 0.921 | 0.653 | 1e-129 | |
| P34802 | 371 | Heterodimeric geranylgera | yes | no | 0.983 | 0.935 | 0.625 | 1e-129 | |
| P80042 | 369 | Geranylgeranyl pyrophosph | N/A | no | 0.994 | 0.951 | 0.635 | 1e-128 | |
| Q43133 | 366 | Geranylgeranyl pyrophosph | N/A | no | 0.983 | 0.948 | 0.627 | 1e-128 | |
| Q9ZU77 | 347 | Geranylgeranyl pyrophosph | no | no | 0.957 | 0.974 | 0.638 | 1e-126 | |
| Q9SLG2 | 372 | Geranylgeranyl pyrophosph | no | no | 0.892 | 0.846 | 0.591 | 1e-110 | |
| O04046 | 376 | Heterodimeric geranylgera | no | no | 0.807 | 0.757 | 0.631 | 1e-108 | |
| Q9LRR0 | 361 | Putative geranylgeranyl p | no | no | 0.974 | 0.952 | 0.564 | 1e-106 | |
| Q9LUD9 | 360 | Geranylgeranyl pyrophosph | no | no | 0.974 | 0.955 | 0.581 | 1e-104 |
| >sp|Q94ID7|GGPPS_HEVBR Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis GN=GGPS PE=1 SV=1 | Back alignment and function desciption |
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Score = 514 bits (1324), Expect = e-145, Method: Compositional matrix adjust.
Identities = 257/370 (69%), Positives = 302/370 (81%), Gaps = 17/370 (4%)
Query: 1 MSCVNLAAWTQTCSIFNQASSRRSNKTQ---PFRTLKTLPVSLASQRPRRPVS-ISAV-- 54
MS VNL +W T + NQA+ RS PF LK+L +S A ++ RP+S +SA+
Sbjct: 1 MSSVNLGSWVHTSYVLNQATRSRSKSKSFSLPFNPLKSLAISFAYRKSERPISSVSAIIT 60
Query: 55 ---QTL-EENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKR 110
+TL EE P P+FDFKSYM+QK +++NQAL+AA+ L++P KIHESMRYSLLAGGKR
Sbjct: 61 KEEETLQEEQNNPPPSFDFKSYMLQKGNSINQALEAAIPLQEPAKIHESMRYSLLAGGKR 120
Query: 111 VRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYG 170
VRP LCLAAC+LVGG++SMAMPAAC++EMIHTMSLIHDDLPCMDND LRRGKPTNH ++G
Sbjct: 121 VRPALCLAACELVGGNDSMAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFG 180
Query: 171 EDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQ-------AE 223
EDVAVLAGDALLA+AFEHIAV T VS ARIVRA+ ELAK IGA+GLVAGQ
Sbjct: 181 EDVAVLAGDALLAFAFEHIAVSTLNVSSARIVRAVGELAKAIGAEGLVAGQVVDINSEGS 240
Query: 224 KDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILD 283
++ +E LEFIH HKTA LLE AVVLGAILGGGTD EVEKLR +AR IGLLFQVVDDILD
Sbjct: 241 SEVDLEKLEFIHIHKTAKLLEGAVVLGAILGGGTDEEVEKLRKYARDIGLLFQVVDDILD 300
Query: 284 LTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIA 343
+TKSS+ELGKTAGKDLVADK+TYPKLLGIE+S++ A+KLNK+AQ+QL+ FD EKA PLIA
Sbjct: 301 VTKSSQELGKTAGKDLVADKVTYPKLLGIEKSREFAEKLNKEAQEQLAGFDPEKAAPLIA 360
Query: 344 LANYIAYRQN 353
LANYIA+RQN
Sbjct: 361 LANYIAHRQN 370
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Catalyzes the trans-addition of the three molecules of IPP onto DMAPP to form geranylgeranyl pyrophosphate. Hevea brasiliensis (taxid: 3981) EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 1EC: 0 |
| >sp|Q42698|GGPPS_CATRO Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Catharanthus roseus GN=GGPS1 PE=3 SV=1 | Back alignment and function description |
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| >sp|P34802|GGPP1_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic OS=Arabidopsis thaliana GN=GGPPS1 PE=1 SV=2 | Back alignment and function description |
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| >sp|P80042|GGPPS_CAPAN Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Capsicum annuum GN=GGPS1 PE=3 SV=1 | Back alignment and function description |
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| >sp|Q43133|GGPPS_SINAL Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic OS=Sinapis alba GN=GGPS1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9ZU77|GGPP7_ARATH Geranylgeranyl pyrophosphate synthase 7, chloroplastic OS=Arabidopsis thaliana GN=At2g18620 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9SLG2|GGPP4_ARATH Geranylgeranyl pyrophosphate synthase 4 OS=Arabidopsis thaliana GN=GGPP4 PE=2 SV=1 | Back alignment and function description |
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| >sp|O04046|GGPP2_ARATH Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2 OS=Arabidopsis thaliana GN=GGPPS2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9LRR0|GGPP8_ARATH Putative geranylgeranyl pyrophosphate synthase 8, chloroplastic OS=Arabidopsis thaliana GN=At3g14510 PE=5 SV=2 | Back alignment and function description |
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| >sp|Q9LUD9|GGPP3_ARATH Geranylgeranyl pyrophosphate synthase 3, chloroplastic OS=Arabidopsis thaliana GN=GGPP3 PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 353 | ||||||
| 157965847 | 373 | geranylgeranyl diphosphate synthase [Cor | 1.0 | 0.946 | 0.699 | 1e-144 | |
| 164605012 | 370 | geranylgeranyl-diphosphate synthase [Hev | 1.0 | 0.954 | 0.697 | 1e-144 | |
| 75250205 | 370 | RecName: Full=Geranylgeranyl pyrophospha | 1.0 | 0.954 | 0.694 | 1e-143 | |
| 224133886 | 366 | predicted protein [Populus trichocarpa] | 1.0 | 0.964 | 0.707 | 1e-143 | |
| 229915240 | 369 | geranyl diphosphate synthase large subun | 0.997 | 0.953 | 0.689 | 1e-143 | |
| 226510660 | 365 | geranylgeranyl pyrophosphate synthase [E | 0.985 | 0.953 | 0.691 | 1e-141 | |
| 6277254 | 368 | geranylgeranyl pyrophosphate synthase [C | 0.988 | 0.948 | 0.688 | 1e-141 | |
| 295322739 | 370 | geranylgeranyl-diphosphate synthase [Med | 1.0 | 0.954 | 0.683 | 1e-140 | |
| 224096916 | 365 | predicted protein [Populus trichocarpa] | 0.994 | 0.961 | 0.697 | 1e-139 | |
| 356559416 | 367 | PREDICTED: geranylgeranyl pyrophosphate | 0.997 | 0.959 | 0.695 | 1e-139 |
| >gi|157965847|gb|ABW06960.1| geranylgeranyl diphosphate synthase [Corylus avellana] | Back alignment and taxonomy information |
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Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 261/373 (69%), Positives = 307/373 (82%), Gaps = 20/373 (5%)
Query: 1 MSCVNLAAWTQTCSIFNQASSRRSNKTQPFRTL---KTLPVSLASQRPRRPVSI------ 51
MSCVNL+ W QTCS+FNQA RS T F+ L K +P+S + RR +S
Sbjct: 1 MSCVNLSTWVQTCSMFNQAGRSRSMSTPSFQILHPLKNIPISFIPPKRRRSISSVSVSAV 60
Query: 52 ----SAVQTLEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAG 107
++ EE+ + + TF+FK+YM+QKA++VNQALDAAVSLKDP KIHE+MRYSLLAG
Sbjct: 61 LTKEDTLREEEESESEARTFNFKTYMLQKANSVNQALDAAVSLKDPRKIHEAMRYSLLAG 120
Query: 108 GKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHT 167
GKRVRP+LC+AAC+LVGG ES+AMPAACS+EMIHTMSLIHDDLPCMDND LRRGKPTNH
Sbjct: 121 GKRVRPMLCIAACELVGGTESIAMPAACSVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHK 180
Query: 168 IYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQ------ 221
++GEDVAVLAGDALLA++FEHIAV T+GV PARI+RAI ELA+ IGA+GLVAGQ
Sbjct: 181 VFGEDVAVLAGDALLAFSFEHIAVSTEGVPPARILRAIGELARSIGAEGLVAGQVVDICS 240
Query: 222 -AEKDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDD 280
D+G+EHLEFIH HKTAALLE AVVLGAILGGG++ EVEKLR FAR IGLLFQVVDD
Sbjct: 241 EGLSDVGLEHLEFIHLHKTAALLEGAVVLGAILGGGSNEEVEKLRNFARYIGLLFQVVDD 300
Query: 281 ILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVP 340
ILD+TKSS+ELGKTAGKDLVADK+TYPKL+G+E+S++ A+KLNKDAQ QL+ FD EKA P
Sbjct: 301 ILDVTKSSQELGKTAGKDLVADKVTYPKLMGVEKSREFAEKLNKDAQDQLAGFDAEKAAP 360
Query: 341 LIALANYIAYRQN 353
LIALANYIA+RQN
Sbjct: 361 LIALANYIAHRQN 373
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Source: Corylus avellana Species: Corylus avellana Genus: Corylus Family: Betulaceae Order: Fagales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|164605012|dbj|BAF98302.1| geranylgeranyl-diphosphate synthase [Hevea brasiliensis] | Back alignment and taxonomy information |
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| >gi|75250205|sp|Q94ID7.1|GGPPS_HEVBR RecName: Full=Geranylgeranyl pyrophosphate synthase, chloroplastic; Short=GGPP synthase; Short=GGPS; AltName: Full=(2E,6E)-farnesyl diphosphate synthase; AltName: Full=Dimethylallyltranstransferase; AltName: Full=Farnesyl diphosphate synthase; AltName: Full=Farnesyltranstransferase; AltName: Full=Geranyltranstransferase; Flags: Precursor gi|14325238|dbj|BAB60678.1| geranylgeranyl diphosphate synthase [Hevea brasiliensis] | Back alignment and taxonomy information |
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| >gi|224133886|ref|XP_002327704.1| predicted protein [Populus trichocarpa] gi|222836789|gb|EEE75182.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|229915240|gb|ACQ90682.1| geranyl diphosphate synthase large subunit [Humulus lupulus] | Back alignment and taxonomy information |
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| >gi|226510660|gb|ACO59905.1| geranylgeranyl pyrophosphate synthase [Elaeagnus umbellata] | Back alignment and taxonomy information |
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| >gi|6277254|dbj|BAA86284.1| geranylgeranyl pyrophosphate synthase [Croton sublyratus] | Back alignment and taxonomy information |
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| >gi|295322739|gb|ADG01841.1| geranylgeranyl-diphosphate synthase [Medicago sativa] | Back alignment and taxonomy information |
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| >gi|224096916|ref|XP_002310785.1| predicted protein [Populus trichocarpa] gi|222853688|gb|EEE91235.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356559416|ref|XP_003547995.1| PREDICTED: geranylgeranyl pyrophosphate synthase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 353 | ||||||
| TAIR|locus:2115450 | 371 | GGPS1 "geranylgeranyl pyrophos | 1.0 | 0.951 | 0.566 | 3e-101 | |
| UNIPROTKB|P80042 | 369 | GGPS1 "Geranylgeranyl pyrophos | 0.997 | 0.953 | 0.564 | 2.2e-98 | |
| TAIR|locus:2046283 | 347 | AT2G18620 [Arabidopsis thalian | 0.869 | 0.884 | 0.618 | 3.2e-97 | |
| TAIR|locus:2089626 | 360 | AT3G14530 "AT3G14530" [Arabido | 0.960 | 0.941 | 0.527 | 4e-90 | |
| TAIR|locus:2093832 | 357 | AT3G29430 [Arabidopsis thalian | 0.980 | 0.969 | 0.509 | 2.9e-87 | |
| TAIR|locus:2046258 | 372 | GGPS4 "geranylgeranyl pyrophos | 0.892 | 0.846 | 0.533 | 7.7e-87 | |
| TAIR|locus:2079028 | 360 | AT3G32040 [Arabidopsis thalian | 0.949 | 0.930 | 0.501 | 8.9e-86 | |
| TAIR|locus:2048993 | 376 | GGPS2 "geranylgeranyl pyrophos | 0.804 | 0.755 | 0.562 | 9.1e-84 | |
| TAIR|locus:2087550 | 344 | AT3G20160 [Arabidopsis thalian | 0.869 | 0.892 | 0.518 | 2.9e-80 | |
| TAIR|locus:2010182 | 336 | GGPS6 "geranylgeranyl pyrophos | 0.753 | 0.791 | 0.498 | 1.4e-71 |
| TAIR|locus:2115450 GGPS1 "geranylgeranyl pyrophosphate synthase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1004 (358.5 bits), Expect = 3.0e-101, P = 3.0e-101
Identities = 210/371 (56%), Positives = 262/371 (70%)
Query: 1 MSCVNLAAW--TQTCSIFNQASSRRSNKTQPFRTLKTLPVSLASQRP-RRPVSI--SAVQ 55
M+ V L +W + + +S ++++ T P+S S+R SI S+V
Sbjct: 1 MASVTLGSWIVVHHHNHHHPSSILTKSRSRSCPITLTKPISFRSKRTVSSSSSIVSSSVV 60
Query: 56 TLEENPAPS-PT-FDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRP 113
T E+N S P+ FDF SY+I KA VN+ALD+AV L++P+KIHE+MRYSLLAGGKRVRP
Sbjct: 61 TKEDNLRQSEPSSFDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRP 120
Query: 114 VLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEXX 173
VLC+AAC+LVGG ES AMPAAC++EMIHTMSLIHDDLPCMDND LRRGKPTNH ++GE
Sbjct: 121 VLCIAACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDV 180
Query: 174 XXXXXXXXXXXXFEHIAVCTKG--VSPARIVRAIAELAKYIGADGLVAGQ-----AE--- 223
FEH+A T VSP R+VRA+ ELAK IG +GLVAGQ +E
Sbjct: 181 AVLAGDALLSFAFEHLASATSSDVVSPVRVVRAVGELAKAIGTEGLVAGQVVDISSEGLD 240
Query: 224 -KDLGIEHLEFIHEHKTXXXXXXXXXXXXXXXXXTDNEVEKLRTFARCIGLLFQVVDDIL 282
D+G+EHLEFIH HKT +D+E+E+LR FARCIGLLFQVVDDIL
Sbjct: 241 LNDVGLEHLEFIHLHKTAALLEASAVLGAIVGGGSDDEIERLRKFARCIGLLFQVVDDIL 300
Query: 283 DLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLI 342
D+TKSSKELGKTAGKDL+ADKLTYPK++G+E+S++ A+KLN++A+ QL FD +K PL+
Sbjct: 301 DVTKSSKELGKTAGKDLIADKLTYPKIMGLEKSREFAEKLNREARDQLLGFDSDKVAPLL 360
Query: 343 ALANYIAYRQN 353
ALANYIAYRQN
Sbjct: 361 ALANYIAYRQN 371
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| UNIPROTKB|P80042 GGPS1 "Geranylgeranyl pyrophosphate synthase, chloroplastic" [Capsicum annuum (taxid:4072)] | Back alignment and assigned GO terms |
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| TAIR|locus:2046283 AT2G18620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2089626 AT3G14530 "AT3G14530" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2093832 AT3G29430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2046258 GGPS4 "geranylgeranyl pyrophosphate synthase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2079028 AT3G32040 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2048993 GGPS2 "geranylgeranyl pyrophosphate synthase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2087550 AT3G20160 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2010182 GGPS6 "geranylgeranyl pyrophosphate synthase 6" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q94ID7 | GGPPS_HEVBR | 2, ., 5, ., 1, ., 1, 0 | 0.6945 | 1.0 | 0.9540 | N/A | no |
| P34802 | GGPP1_ARATH | 2, ., 5, ., 1, ., 1, 0 | 0.6259 | 0.9830 | 0.9353 | yes | no |
| Q42698 | GGPPS_CATRO | 2, ., 5, ., 1, ., 1, 0 | 0.6536 | 0.9320 | 0.9215 | N/A | no |
| P80042 | GGPPS_CAPAN | 2, ., 5, ., 1, ., 1, 0 | 0.6358 | 0.9943 | 0.9512 | N/A | no |
| P48368 | CRTE_CYAPA | 2, ., 5, ., 1, ., 2, 9 | 0.5118 | 0.8130 | 0.9566 | N/A | no |
| P54383 | ISPA_BACSU | 2, ., 5, ., 1, ., 1, 0 | 0.4256 | 0.8130 | 0.9695 | yes | no |
| Q43133 | GGPPS_SINAL | 2, ., 5, ., 1, ., 1, 0 | 0.6277 | 0.9830 | 0.9480 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.5.1 | 0.976 |
| 4th Layer | 2.5.1.10 | 0.991 |
| 4th Layer | 2.5.1.1 | 0.991 |
| 4th Layer | 2.5.1.29 | 0.991 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 353 | |||
| pfam00348 | 260 | pfam00348, polyprenyl_synt, Polyprenyl synthetase | 5e-89 | |
| cd00685 | 259 | cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphat | 1e-88 | |
| COG0142 | 322 | COG0142, IspA, Geranylgeranyl pyrophosphate syntha | 2e-87 | |
| CHL00151 | 323 | CHL00151, preA, prenyl transferase; Reviewed | 2e-68 | |
| PRK10581 | 299 | PRK10581, PRK10581, geranyltranstransferase; Provi | 2e-60 | |
| cd00867 | 236 | cd00867, Trans_IPPS, Trans-Isoprenyl Diphosphate S | 6e-59 | |
| TIGR02748 | 319 | TIGR02748, GerC3_HepT, heptaprenyl diphosphate syn | 2e-35 | |
| cd00385 | 243 | cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth | 9e-35 | |
| PLN02857 | 416 | PLN02857, PLN02857, octaprenyl-diphosphate synthas | 2e-34 | |
| TIGR02749 | 322 | TIGR02749, prenyl_cyano, solanesyl diphosphate syn | 5e-33 | |
| PRK10888 | 323 | PRK10888, PRK10888, octaprenyl diphosphate synthas | 4e-26 | |
| PLN02890 | 422 | PLN02890, PLN02890, geranyl diphosphate synthase | 4e-16 |
| >gnl|CDD|215873 pfam00348, polyprenyl_synt, Polyprenyl synthetase | Back alignment and domain information |
|---|
Score = 267 bits (685), Expect = 5e-89
Identities = 116/256 (45%), Positives = 153/256 (59%), Gaps = 11/256 (4%)
Query: 96 IHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDN 155
+ +M Y LLAGGKR+RP+L + A +G + AC+IEMIHT SL+HDDL MDN
Sbjct: 1 LLAAMLYYLLAGGKRIRPLLVVLAARALGVEPETLLYLACAIEMIHTASLVHDDL--MDN 58
Query: 156 DPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGAD 215
LRRGKPT H +GE A+LAGDALL+ AF+ +A+ V P I+ELA +GA
Sbjct: 59 SDLRRGKPTCHKKFGEAGAILAGDALLSRAFQLLAL-LGHVRPEPKYILISELANAVGAQ 117
Query: 216 GLVAGQ------AEKDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFAR 269
G V GQ KD+ +E I +KTAAL A+V LGAI+ G + + + L F R
Sbjct: 118 GEV-GQLMDLETEGKDITLEEYLRIVSYKTAALFYASVQLGAIVAGADEEDEKDLYDFGR 176
Query: 270 CIGLLFQVVDDILDLTKSSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQ 329
+GL FQ+ DDILDLT ++ELGK G DL K T P LL +E +++ KL ++A +Q
Sbjct: 177 DLGLAFQIQDDILDLTGDTEELGKPVGTDLQEGKSTLPVLLALEGAREEQRKLLREAYEQ 236
Query: 330 -LSEFDQEKAVPLIAL 344
LSE + AL
Sbjct: 237 KLSEAAAQGVALTKAL 252
|
Length = 260 |
| >gnl|CDD|173833 cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases, head-to-tail | Back alignment and domain information |
|---|
| >gnl|CDD|223220 COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >gnl|CDD|164542 CHL00151, preA, prenyl transferase; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|182567 PRK10581, PRK10581, geranyltranstransferase; Provisional | Back alignment and domain information |
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| >gnl|CDD|173836 cd00867, Trans_IPPS, Trans-Isoprenyl Diphosphate Synthases | Back alignment and domain information |
|---|
| >gnl|CDD|131795 TIGR02748, GerC3_HepT, heptaprenyl diphosphate synthase component II | Back alignment and domain information |
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| >gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 | Back alignment and domain information |
|---|
| >gnl|CDD|215462 PLN02857, PLN02857, octaprenyl-diphosphate synthase | Back alignment and domain information |
|---|
| >gnl|CDD|131796 TIGR02749, prenyl_cyano, solanesyl diphosphate synthase | Back alignment and domain information |
|---|
| >gnl|CDD|182813 PRK10888, PRK10888, octaprenyl diphosphate synthase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|178478 PLN02890, PLN02890, geranyl diphosphate synthase | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 353 | |||
| PRK10581 | 299 | geranyltranstransferase; Provisional | 100.0 | |
| KOG0776 | 384 | consensus Geranylgeranyl pyrophosphate synthase/Po | 100.0 | |
| COG0142 | 322 | IspA Geranylgeranyl pyrophosphate synthase [Coenzy | 100.0 | |
| TIGR02748 | 319 | GerC3_HepT heptaprenyl diphosphate synthase compon | 100.0 | |
| PLN02857 | 416 | octaprenyl-diphosphate synthase | 100.0 | |
| PRK10888 | 323 | octaprenyl diphosphate synthase; Provisional | 100.0 | |
| TIGR02749 | 322 | prenyl_cyano solanesyl diphosphate synthase. Membe | 100.0 | |
| CHL00151 | 323 | preA prenyl transferase; Reviewed | 100.0 | |
| PLN02890 | 422 | geranyl diphosphate synthase | 100.0 | |
| cd00685 | 259 | Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase | 100.0 | |
| PF00348 | 260 | polyprenyl_synt: Polyprenyl synthetase; InterPro: | 100.0 | |
| cd00867 | 236 | Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. | 100.0 | |
| KOG0777 | 322 | consensus Geranylgeranyl pyrophosphate synthase/Po | 100.0 | |
| KOG0711 | 347 | consensus Polyprenyl synthetase [Coenzyme transpor | 99.97 | |
| cd00385 | 243 | Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym | 99.85 | |
| PF07307 | 212 | HEPPP_synt_1: Heptaprenyl diphosphate synthase (HE | 97.02 | |
| cd00683 | 265 | Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase | 95.91 | |
| TIGR03465 | 266 | HpnD squalene synthase HpnD. The genes of this fam | 95.85 | |
| PLN02632 | 334 | phytoene synthase | 95.81 | |
| TIGR01559 | 336 | squal_synth farnesyl-diphosphate farnesyltransfera | 94.67 | |
| TIGR03464 | 266 | HpnC squalene synthase HpnC. This family of genes | 94.43 | |
| PF00494 | 267 | SQS_PSY: Squalene/phytoene synthase; InterPro: IPR | 91.62 | |
| TIGR02748 | 319 | GerC3_HepT heptaprenyl diphosphate synthase compon | 87.32 | |
| PRK12884 | 279 | ubiA prenyltransferase; Reviewed | 86.9 | |
| PRK10888 | 323 | octaprenyl diphosphate synthase; Provisional | 86.86 | |
| cd00687 | 303 | Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl | 85.88 | |
| PRK12882 | 276 | ubiA prenyltransferase; Reviewed | 85.76 | |
| cd00685 | 259 | Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase | 85.41 | |
| PF00348 | 260 | polyprenyl_synt: Polyprenyl synthetase; InterPro: | 83.73 |
| >PRK10581 geranyltranstransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-66 Score=498.45 Aligned_cols=287 Identities=42% Similarity=0.614 Sum_probs=259.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhCCC--CchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCccccccHHHHHHHHHHHH
Q 038854 67 FDFKSYMIQKASTVNQALDAAVSLK--DPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMS 144 (353)
Q Consensus 67 ~~~~~~l~~~~~~v~~~l~~~~~~~--~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~lA~avEliH~as 144 (353)
++|..+++.....|++.|.+.+... .++.+.++++|.+..||||+||.||+++++++|++++.+.++|++||+||+||
T Consensus 1 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~~~~~~~gGKrlRp~L~l~~~~~~g~~~~~~~~~A~avEliH~aS 80 (299)
T PRK10581 1 MDFPQQLQACVQQANQALSRFIAPLPFQNTPVVEAMQYGALLGGKRLRPFLVYATGQMFGVSTNTLDAPAAAVECIHAYS 80 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHhcCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 4688889889999999999988643 25679999999999999999999999999999998888899999999999999
Q ss_pred HHHhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccC-CCChHHHHHHHHHHHHHHhhhhhhhhccc
Q 038854 145 LIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTK-GVSPARIVRAIAELAKYIGADGLVAGQAE 223 (353)
Q Consensus 145 LIHDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~-~~~~~~~~~~~~~l~~~i~~~~l~~GQ~~ 223 (353)
||||||||||+|++|||+||+|.+||+++|||+||+|++.||+.+++... ...+....+++.+++.+.+..+++.||.+
T Consensus 81 LiHDDip~~D~s~~RRG~pt~h~~~G~~~AIl~GD~L~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~GQ~l 160 (299)
T PRK10581 81 LIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDAPMPEVSDRDRISMISELASASGIAGMCGGQAL 160 (299)
T ss_pred HHHcCcccccCCCccCCCcChHHHhCcchHHHHHHHHHHHHHHHHHhCCCccCChHHHHHHHHHHHHhcccchhhHhhHH
Confidence 99999999999999999999999999999999999999999999986422 23344556778888776555679999988
Q ss_pred ------ccCChhHHHHHHHhcHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcc
Q 038854 224 ------KDLGIEHLEFIHEHKTAALLEAAVVLGAILGGGTD-NEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAG 296 (353)
Q Consensus 224 ------~~~~~~~~~~i~~~KTg~L~~~~~~lga~lag~~~-~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g 296 (353)
...+.++|.+|+.+|||+||++||.+|++++|+++ +.++.+++||+++|+||||+||++|++++++.+||+.|
T Consensus 161 d~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~gailag~~~~~~~~~l~~~g~~lG~aFQI~DDilD~~g~~~~~GK~~g 240 (299)
T PRK10581 161 DLEAEGKQVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDRYAESIGLAFQVQDDILDVVGDTATLGKRQG 240 (299)
T ss_pred HHhccCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHCCCcc
Confidence 24678899999999999999999999999999864 57899999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCCh--HHHHHHHHHHHhccC
Q 038854 297 KDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKA--VPLIALANYIAYRQN 353 (353)
Q Consensus 297 ~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~~~~~~--~~L~~l~~~i~~R~~ 353 (353)
+|+++||+|||+++++++|++.++++.++|++.|+.+|.... +.|.+|++|+.+|.+
T Consensus 241 ~Dl~~gk~T~p~l~~~e~a~~~a~~~~~~A~~~l~~l~~~~~~~~~L~~l~~~~~~R~~ 299 (299)
T PRK10581 241 ADQQLGKSTYPALLGLEQARKKARDLIDDARQSLDQLAAQSLDTSALEALANYIIQRDK 299 (299)
T ss_pred hhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCchhHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999986443 789999999999975
|
|
| >KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II | Back alignment and domain information |
|---|
| >PLN02857 octaprenyl-diphosphate synthase | Back alignment and domain information |
|---|
| >PRK10888 octaprenyl diphosphate synthase; Provisional | Back alignment and domain information |
|---|
| >TIGR02749 prenyl_cyano solanesyl diphosphate synthase | Back alignment and domain information |
|---|
| >CHL00151 preA prenyl transferase; Reviewed | Back alignment and domain information |
|---|
| >PLN02890 geranyl diphosphate synthase | Back alignment and domain information |
|---|
| >cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail | Back alignment and domain information |
|---|
| >PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms | Back alignment and domain information |
|---|
| >cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases | Back alignment and domain information |
|---|
| >KOG0777 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0711 consensus Polyprenyl synthetase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 | Back alignment and domain information |
|---|
| >PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2 | Back alignment and domain information |
|---|
| >cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head | Back alignment and domain information |
|---|
| >TIGR03465 HpnD squalene synthase HpnD | Back alignment and domain information |
|---|
| >PLN02632 phytoene synthase | Back alignment and domain information |
|---|
| >TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase | Back alignment and domain information |
|---|
| >TIGR03464 HpnC squalene synthase HpnC | Back alignment and domain information |
|---|
| >PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 | Back alignment and domain information |
|---|
| >TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II | Back alignment and domain information |
|---|
| >PRK12884 ubiA prenyltransferase; Reviewed | Back alignment and domain information |
|---|
| >PRK10888 octaprenyl diphosphate synthase; Provisional | Back alignment and domain information |
|---|
| >cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 | Back alignment and domain information |
|---|
| >PRK12882 ubiA prenyltransferase; Reviewed | Back alignment and domain information |
|---|
| >cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail | Back alignment and domain information |
|---|
| >PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 353 | ||||
| 3kra_A | 295 | Mint Heterotetrameric Geranyl Pyrophosphate Synthas | 1e-108 | ||
| 2j1p_A | 293 | Geranylgeranyl Diphosphate Synthase From Sinapis Al | 1e-92 | ||
| 2j1o_A | 268 | Geranylgeranyl Diphosphate Synthase From Sinapis Al | 5e-83 | ||
| 4f62_A | 317 | Crystal Structure Of A Putative Farnesyl-Diphosphat | 5e-48 | ||
| 3uca_A | 324 | Crystal Structure Of Isoprenoid Synthase (Target Ef | 4e-37 | ||
| 3ts7_A | 324 | Crystal Structure Of Farnesyl Diphosphate Synthase | 3e-35 | ||
| 1rtr_A | 301 | Crystal Structure Of S. Aureus Farnesyl Pyrophospha | 6e-34 | ||
| 3p41_A | 303 | Crystal Structure Of Polyprenyl Synthetase From Pse | 1e-33 | ||
| 3lji_A | 304 | Crystal Structure Of Putative Geranyltranstransfera | 2e-33 | ||
| 3m9u_A | 309 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 1e-30 | ||
| 3q1o_A | 310 | Crystal Structure Of Geranyltransferase From Helico | 2e-29 | ||
| 3llw_A | 311 | Crystal Structure Of Geranyltransferase From Helico | 2e-29 | ||
| 3p8r_A | 302 | Crystal Structure Of Polyprenyl Synthase From Vibri | 2e-29 | ||
| 3p8l_A | 302 | Crystal Structure Of Polyprenyl Synthase From Enter | 2e-28 | ||
| 2for_A | 323 | Crystal Structure Of The Shigella Flexneri Farnesyl | 1e-27 | ||
| 1rqj_A | 299 | Active Conformation Of Farnesyl Pyrophosphate Synth | 2e-27 | ||
| 1rqi_A | 300 | Active Conformation Of Farnesyl Pyrophosphate Synth | 2e-27 | ||
| 1wy0_A | 342 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 4e-27 | ||
| 3lom_A | 313 | Crystal Structure Of Geranyltransferase From Legion | 1e-26 | ||
| 3npk_A | 291 | The Crystal Structure Of Geranyltranstransferase Fr | 3e-24 | ||
| 3lvs_A | 298 | Crystal Structure Of Farnesyl Diphosphate Synthase | 4e-24 | ||
| 2h8o_A | 335 | The 1.6a Crystal Structure Of The Geranyltransferas | 4e-20 | ||
| 3oyr_A | 345 | Crystal Structure Of Polyprenyl Synthase From Caulo | 2e-18 | ||
| 2ftz_A | 284 | Crystal Structure Of Geranyltranstransferase (Ec 2. | 1e-17 | ||
| 3mzv_A | 341 | Crystal Structure Of A Decaprenyl Diphosphate Synth | 2e-17 | ||
| 4dhd_A | 358 | Crystal Structure Of Isoprenoid Synthase A3msh1 (Ta | 1e-16 | ||
| 3aqb_B | 325 | M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphospha | 4e-15 | ||
| 3lmd_A | 360 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 6e-15 | ||
| 3rmg_A | 334 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 5e-14 | ||
| 3nf2_A | 352 | Crystal Structure Of Polyprenyl Synthetase From Str | 2e-12 | ||
| 3m0g_A | 297 | Crystal Structure Of Putative Farnesyl Diphosphate | 5e-11 | ||
| 3qkc_B | 273 | Crystal Structure Of Geranyl Diphosphate Synthase S | 3e-10 | ||
| 3kra_B | 274 | Mint Heterotetrameric Geranyl Pyrophosphate Synthas | 3e-10 | ||
| 3oab_B | 264 | Mint Deletion Mutant Of Heterotetrameric Geranyl Py | 2e-08 | ||
| 3ipi_A | 295 | Crystal Structure Of A Geranyltranstransferase From | 9e-08 | ||
| 3apz_A | 348 | Apo Form Of Arabidopsis MediumLONG-Chain Length Pre | 4e-07 | ||
| 3lk5_A | 380 | Crystal Structure Of Putative Geranylgeranyl Pyroph | 8e-07 | ||
| 3tc1_A | 315 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 3e-06 | ||
| 3aq0_A | 348 | Ligand-Bound Form Of Arabidopsis MediumLONG-Chain L | 2e-05 | ||
| 2q80_A | 301 | Crystal Structure Of Human Geranylgeranyl Pyrophosp | 3e-05 | ||
| 3pko_A | 334 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 2e-04 | ||
| 3n3d_A | 335 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 2e-04 | ||
| 2azk_A | 289 | Crystal Structure For The Mutant W136e Of Sulfolobu | 4e-04 |
| >pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In Complex With Magnesium Length = 295 | Back alignment and structure |
|
| >pdb|2J1P|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In Complex With Ggpp Length = 293 | Back alignment and structure |
| >pdb|2J1O|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba Length = 268 | Back alignment and structure |
| >pdb|4F62|A Chain A, Crystal Structure Of A Putative Farnesyl-Diphosphate Synthase From Marinomonas Sp. Med121 (Target Efi-501980) Length = 317 | Back alignment and structure |
| >pdb|3UCA|A Chain A, Crystal Structure Of Isoprenoid Synthase (Target Efi-501974) From Clostridium Perfringens Length = 324 | Back alignment and structure |
| >pdb|3TS7|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase (Target Efi-501951) From Methylococcus Capsulatus Length = 324 | Back alignment and structure |
| >pdb|1RTR|A Chain A, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate Synthase Length = 301 | Back alignment and structure |
| >pdb|3P41|A Chain A, Crystal Structure Of Polyprenyl Synthetase From Pseudomonas Fluorescens Pf-5 Complexed With Magnesium And Isoprenyl Pyrophosphate Length = 303 | Back alignment and structure |
| >pdb|3LJI|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From Pseudomonas Fluorescens Pf-5 Length = 304 | Back alignment and structure |
| >pdb|3M9U|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Lactobacillus Brevis Atcc 367 Length = 309 | Back alignment and structure |
| >pdb|3Q1O|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter Pylori Complexed With Magnesium And Isoprenyl Diphosphate Length = 310 | Back alignment and structure |
| >pdb|3LLW|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter Pylori 26695 Length = 311 | Back alignment and structure |
| >pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio Cholerae Length = 302 | Back alignment and structure |
| >pdb|3P8L|A Chain A, Crystal Structure Of Polyprenyl Synthase From Enterococcus Faecalis V583 Length = 302 | Back alignment and structure |
| >pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl Pyrophosphate Synthase Complex With An Isopentenyl Pyrophosphate Length = 323 | Back alignment and structure |
| >pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase Bound To Isopentyl Pyrophosphate And Risedronate Length = 299 | Back alignment and structure |
| >pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase Bound To Isopentyl Pyrophosphate And Dimethylallyl S- Thiolodiphosphate Length = 300 | Back alignment and structure |
| >pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthetase From Pyrococcus Horikoshii Ot3 Length = 342 | Back alignment and structure |
| >pdb|3LOM|A Chain A, Crystal Structure Of Geranyltransferase From Legionella Pneumophila Length = 313 | Back alignment and structure |
| >pdb|3NPK|A Chain A, The Crystal Structure Of Geranyltranstransferase From Campylobacter Jejuni Length = 291 | Back alignment and structure |
| >pdb|3LVS|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase From Rhodobacter Capsulatus Sb1003 Length = 298 | Back alignment and structure |
| >pdb|2H8O|A Chain A, The 1.6a Crystal Structure Of The Geranyltransferase From Agrobacterium Tumefaciens Length = 335 | Back alignment and structure |
| >pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter Crescentus Cb15 Complexed With Calcium And Isoprenyl Diphosphate Length = 345 | Back alignment and structure |
| >pdb|2FTZ|A Chain A, Crystal Structure Of Geranyltranstransferase (Ec 2.5.1.10) (Tm0161) From Thermotoga Maritima At 1.90 A Resolution Length = 284 | Back alignment and structure |
| >pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase From Rhodobacter Capsulatus Length = 341 | Back alignment and structure |
| >pdb|4DHD|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target Efi-501992) From Pyrobaculum Calidifontis Length = 358 | Back alignment and structure |
| >pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate Synthase In Complex With Magnesium Length = 325 | Back alignment and structure |
| >pdb|3LMD|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Corynebacterium Glutamicum Atcc 13032 Length = 360 | Back alignment and structure |
| >pdb|3RMG|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Bacteroides Thetaiotaomicron Length = 334 | Back alignment and structure |
| >pdb|3NF2|A Chain A, Crystal Structure Of Polyprenyl Synthetase From Streptomyces Coelicolor A3(2) Length = 352 | Back alignment and structure |
| >pdb|3M0G|A Chain A, Crystal Structure Of Putative Farnesyl Diphosphate Synthase From Rhodobacter Capsulatus Length = 297 | Back alignment and structure |
| >pdb|3QKC|B Chain B, Crystal Structure Of Geranyl Diphosphate Synthase Small Subunit From Antirrhinum Majus Length = 273 | Back alignment and structure |
| >pdb|3KRA|B Chain B, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In Complex With Magnesium Length = 274 | Back alignment and structure |
| >pdb|3OAB|B Chain B, Mint Deletion Mutant Of Heterotetrameric Geranyl Pyrophosphate Synthase In Complex With Ligands Length = 264 | Back alignment and structure |
| >pdb|3IPI|A Chain A, Crystal Structure Of A Geranyltranstransferase From The Methanosarcina Mazei Length = 295 | Back alignment and structure |
| >pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl Pyrophosphate Synthase Length = 348 | Back alignment and structure |
| >pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate Synthase From Corynebacterium Glutamicum Length = 380 | Back alignment and structure |
| >pdb|3TC1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Helicobacter Pylori Length = 315 | Back alignment and structure |
| >pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length Prenyl Pyrophosphate Synthase (Surface Polar Residue Mutant) Length = 348 | Back alignment and structure |
| >pdb|2Q80|A Chain A, Crystal Structure Of Human Geranylgeranyl Pyrophosphate Synthase Bound To Ggpp Length = 301 | Back alignment and structure |
| >pdb|3PKO|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Lactobacillus Brevis Atcc 367 Complexed With Citrate Length = 334 | Back alignment and structure |
| >pdb|3N3D|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Lactobacillus Brevis Atcc 367 Length = 335 | Back alignment and structure |
| >pdb|2AZK|A Chain A, Crystal Structure For The Mutant W136e Of Sulfolobus Solfataricus Hexaprenyl Pyrophosphate Synthase Length = 289 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A* Length = 293 | Back alignment and structure |
|---|
Score = 459 bits (1183), Expect = e-164
Identities = 200/307 (65%), Positives = 242/307 (78%), Gaps = 24/307 (7%)
Query: 57 LEENPAPSPTFDFKSYMIQKASTVNQALDAAVSLKDPVKIHESMRYSLLAGGKRVRPVLC 116
+ D SY+I+KA +VN+ALD+AV L++P+KIHE+MRYSLLAGGKRVRPVLC
Sbjct: 1 MMRGSHHHHHTDPISYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLC 60
Query: 117 LAACDLVGGHESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVL 176
+AAC+LVGG ES+AMPAAC++EMIHTMSLIHDDLPCMDND LRRGKPTNH +YGEDVAVL
Sbjct: 61 IAACELVGGEESLAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAVL 120
Query: 177 AGDALLAYAFEHIAVCTKG-VSPARIVRAIAELAKYIGADGLVAGQA---------EKDL 226
AGDALL++AFEH+A T VSPAR+VRA+ ELAK IG +GLVAGQ ++
Sbjct: 121 AGDALLSFAFEHLASATSSEVSPARVVRAVGELAKAIGTEGLVAGQVVDISSEGLDLNNV 180
Query: 227 GIEHLEFIHEHKTAALLEAAVVLGAILGGGTDNEVEKLRTFARCIGLLFQVVDDILDLTK 286
G+EHL+FIH HKTAALLEA+ VLG I+GGG+D E+E+LR FARCIGLLFQVVDDILD+TK
Sbjct: 181 GLEHLKFIHLHKTAALLEASAVLGGIIGGGSDEEIERLRKFARCIGLLFQVVDDILDVTK 240
Query: 287 SSKELGKTAGKDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALAN 346
SS KLTYPKL+G+E+S++ A+KLN +A+ QL FD +K PL+ALAN
Sbjct: 241 SS--------------KLTYPKLMGLEKSREFAEKLNTEARDQLLGFDSDKVAPLLALAN 286
Query: 347 YIAYRQN 353
YIA RQN
Sbjct: 287 YIANRQN 293
|
| >2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens} Length = 335 | Back alignment and structure |
|---|
| >3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} Length = 324 | Back alignment and structure |
|---|
| >3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A* Length = 304 | Back alignment and structure |
|---|
| >4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP} Length = 317 | Back alignment and structure |
|---|
| >3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens} Length = 324 | Back alignment and structure |
|---|
| >1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 Length = 301 | Back alignment and structure |
|---|
| >3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp} Length = 313 | Back alignment and structure |
|---|
| >1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A* Length = 299 | Back alignment and structure |
|---|
| >3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A Length = 297 | Back alignment and structure |
|---|
| >3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} Length = 302 | Back alignment and structure |
|---|
| >3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A* Length = 309 | Back alignment and structure |
|---|
| >3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis} Length = 302 | Back alignment and structure |
|---|
| >3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni} Length = 291 | Back alignment and structure |
|---|
| >3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A* Length = 311 | Back alignment and structure |
|---|
| >3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B* Length = 274 | Back alignment and structure |
|---|
| >3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus} Length = 273 | Back alignment and structure |
|---|
| >2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima} Length = 284 | Back alignment and structure |
|---|
| >3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor} Length = 352 | Back alignment and structure |
|---|
| >4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis} Length = 285 | Back alignment and structure |
|---|
| >1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} Length = 342 | Back alignment and structure |
|---|
| >4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} Length = 358 | Back alignment and structure |
|---|
| >1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus} Length = 330 | Back alignment and structure |
|---|
| >3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Length = 295 | Back alignment and structure |
|---|
| >3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A* Length = 380 | Back alignment and structure |
|---|
| >3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A Length = 334 | Back alignment and structure |
|---|
| >3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B* Length = 325 | Back alignment and structure |
|---|
| >2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A Length = 289 | Back alignment and structure |
|---|
| >3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} Length = 341 | Back alignment and structure |
|---|
| >3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Length = 345 | Back alignment and structure |
|---|
| >2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... Length = 340 | Back alignment and structure |
|---|
| >3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Length = 360 | Back alignment and structure |
|---|
| >3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} Length = 334 | Back alignment and structure |
|---|
| >2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1 Length = 301 | Back alignment and structure |
|---|
| >3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori} Length = 315 | Back alignment and structure |
|---|
| >1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A Length = 299 | Back alignment and structure |
|---|
| >3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A* Length = 348 | Back alignment and structure |
|---|
| >1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A* Length = 362 | Back alignment and structure |
|---|
| >1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A Length = 367 | Back alignment and structure |
|---|
| >3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A* Length = 390 | Back alignment and structure |
|---|
| >2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ... Length = 374 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 353 | |||
| 4f62_A | 317 | Geranyltranstransferase; enzyme function initiativ | 100.0 | |
| 3ts7_A | 324 | Geranyltranstransferase; isoprenoid synthesis, far | 100.0 | |
| 3lsn_A | 304 | Geranyltranstransferase; structural genomics, prot | 100.0 | |
| 3lom_A | 313 | Geranyltranstransferase; geranyltransferase, struc | 100.0 | |
| 1rqj_A | 299 | Geranyltranstransferase; bisphosphonate, isoprenyl | 100.0 | |
| 2h8o_A | 335 | Geranyltranstransferase; geranyltransferase,agroba | 100.0 | |
| 3m0g_A | 297 | Farnesyl diphosphate synthase; structural genomics | 100.0 | |
| 3uca_A | 324 | Geranyltranstransferase; isoprenoid synthesis, iso | 100.0 | |
| 3p8l_A | 302 | Geranyltranstransferase; isoprenyl synthase, struc | 100.0 | |
| 3pde_A | 309 | Farnesyl-diphosphate synthase; isoprenyl diphospha | 100.0 | |
| 3p8r_A | 302 | Geranyltranstransferase; isoprenyl synthase, struc | 100.0 | |
| 1rtr_A | 301 | Geranyltranstransferase; 2.50A {Staphylococcus aur | 100.0 | |
| 3llw_A | 311 | Geranyltranstransferase (ISPA); structural genomic | 100.0 | |
| 3oyr_A | 345 | Trans-isoprenyl diphosphate synthase; isoprenyl sy | 100.0 | |
| 3mzv_A | 341 | Decaprenyl diphosphate synthase; transferase, stru | 100.0 | |
| 2j1p_A | 293 | Geranylgeranyl pyrophosphate synthetase; transfera | 100.0 | |
| 3npk_A | 291 | Geranyltranstransferase; isoprene biosynthesis, SG | 100.0 | |
| 2ftz_A | 284 | Geranyltranstransferase; TM0161, structural GE joi | 100.0 | |
| 1wy0_A | 342 | Geranylgeranyl pyrophosphate synthetase; pyrococcu | 100.0 | |
| 3lmd_A | 360 | Geranylgeranyl pyrophosphate synthase; isoprenyl d | 100.0 | |
| 3rmg_A | 334 | Octaprenyl-diphosphate synthase; structural genomi | 100.0 | |
| 4dhd_A | 358 | Polyprenyl synthetase; isoprenoid synthesis, isopr | 100.0 | |
| 3aqb_B | 325 | Component B of hexaprenyl diphosphate synthase; pr | 100.0 | |
| 3pko_A | 334 | Geranylgeranyl pyrophosphate synthase; isoprenyl d | 100.0 | |
| 3nf2_A | 352 | Putative polyprenyl synthetase; isoprenyl diphosph | 100.0 | |
| 3ipi_A | 295 | Geranyltranstransferase; isoprene biosynthesis, he | 100.0 | |
| 3apz_A | 348 | Geranyl diphosphate synthase; prenyltransferase, a | 100.0 | |
| 1wmw_A | 330 | Geranylgeranyl diphosphate synthetase; GGPP, preny | 100.0 | |
| 2azj_A | 289 | Geranylgeranyl pyrophosphate synthetase; hexpps, t | 100.0 | |
| 3lk5_A | 380 | Geranylgeranyl pyrophosphate synthase; structural | 100.0 | |
| 3tc1_A | 315 | Octaprenyl pyrophosphate synthase; all alpha-helic | 100.0 | |
| 1v4e_A | 299 | Octoprenyl-diphosphate synthase; trans-type prenyl | 100.0 | |
| 2qis_A | 374 | Farnesyl pyrophosphate synthetase; trans-prenyltra | 100.0 | |
| 2q80_A | 301 | Geranylgeranyl pyrophosphate synthetase; isoprenoi | 100.0 | |
| 2e8v_A | 340 | Geranylgeranyl pyrophosphate synthetase; prenyltra | 100.0 | |
| 1yhl_A | 362 | Farnesyl pyrophosphate synthase; farnesyl diphosph | 100.0 | |
| 1uby_A | 367 | FPS, farnesyl diphosphate synthase; transferase, i | 100.0 | |
| 2ihi_A | 395 | Pyrophosphate synthase; PV092040, structural genom | 100.0 | |
| 3dyh_A | 390 | Farnesyl pyrophosphate synthase; protein-bisphosph | 100.0 | |
| 3kra_B | 274 | Geranyl diphosphate synthase small subunit; prenyl | 100.0 | |
| 3mav_A | 395 | Farnesyl pyrophosphate synthase; PV092040, structu | 100.0 | |
| 2her_A | 368 | Fragment, farnesyl pyrophosphate synthase; farnesy | 100.0 | |
| 3qkc_B | 273 | Geranyl diphosphate synthase small subunit; struct | 100.0 | |
| 2q58_A | 368 | Fragment, farnesyl pyrophosphate synthase; farnesy | 100.0 | |
| 4fp4_A | 285 | Polyprenyl synthetase; isoprenoid synthesis, isopr | 100.0 | |
| 4hd1_A | 294 | Squalene synthase HPNC; MCSG, structural genomics, | 94.24 | |
| 3vj8_A | 343 | Squalene synthase; farnesyl-diphosphate farnesyltr | 93.02 | |
| 3acx_A | 293 | Dehydrosqualene synthase; CRTM, carotenoid biosynt | 91.21 | |
| 4fp4_A | 285 | Polyprenyl synthetase; isoprenoid synthesis, isopr | 87.12 | |
| 3mzv_A | 341 | Decaprenyl diphosphate synthase; transferase, stru | 86.35 | |
| 3rmg_A | 334 | Octaprenyl-diphosphate synthase; structural genomi | 85.74 | |
| 3nf2_A | 352 | Putative polyprenyl synthetase; isoprenyl diphosph | 85.18 | |
| 2q80_A | 301 | Geranylgeranyl pyrophosphate synthetase; isoprenoi | 84.61 | |
| 3m0g_A | 297 | Farnesyl diphosphate synthase; structural genomics | 83.15 | |
| 4f62_A | 317 | Geranyltranstransferase; enzyme function initiativ | 81.95 | |
| 2ftz_A | 284 | Geranyltranstransferase; TM0161, structural GE joi | 81.1 | |
| 3aqb_B | 325 | Component B of hexaprenyl diphosphate synthase; pr | 80.65 | |
| 3lmd_A | 360 | Geranylgeranyl pyrophosphate synthase; isoprenyl d | 80.64 | |
| 2e8v_A | 340 | Geranylgeranyl pyrophosphate synthetase; prenyltra | 80.18 | |
| 3pko_A | 334 | Geranylgeranyl pyrophosphate synthase; isoprenyl d | 80.04 |
| >4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-70 Score=526.00 Aligned_cols=286 Identities=44% Similarity=0.697 Sum_probs=242.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhCCCC-chhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCccccccHHHHHHHHHHHH
Q 038854 66 TFDFKSYMIQKASTVNQALDAAVSLKD-PVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMS 144 (353)
Q Consensus 66 ~~~~~~~l~~~~~~v~~~l~~~~~~~~-p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~lA~avEliH~as 144 (353)
+|+|..++.+....|++.|++.++... |+.+.++++|.+..||||+||.||+++++++|++.+.+.++|++|||||++|
T Consensus 2 ~m~~~~~l~~~~~~ve~~L~~~l~~~~~~~~l~~a~~y~~~~gGKrlRp~Lvl~~~~~~g~~~~~~~~~A~avEliH~aS 81 (317)
T 4f62_A 2 VMNLKQFSTYTQSRVDQYLEQQLSDYAPANQLHNAMRYSLFNGGKRIRPMLTYASAQLVGDISSLTDASAAALESIHAYS 81 (317)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHhCCCcchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999998642 6789999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhhhhhhhhccc-
Q 038854 145 LIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTKGVSPARIVRAIAELAKYIGADGLVAGQAE- 223 (353)
Q Consensus 145 LIHDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~l~~~i~~~~l~~GQ~~- 223 (353)
||||||||||+|++|||+||+|++||+++|||+||+|++.||+.+++. .+.+++...+++..+++++|..+++.||.+
T Consensus 82 LIHDDip~mD~s~~RRG~pt~h~~~G~~~AIlaGD~Ll~~Af~~l~~~-~~~~~~~~~~~i~~la~a~g~~~m~~GQ~lD 160 (317)
T 4f62_A 82 LIHDDLPAMDNDELRRGKPTCHIQFDEATAILAGDALQTFAFELLSNP-TSAQPELAIKLIQELVVASGRNGMITGQMID 160 (317)
T ss_dssp HHHHHSTTSCC-------CCHHHHSCHHHHHHHHHHHHHHHHHHHTCT-TCCCHHHHHHHHHHHHHHHSTTTHHHHHHHH
T ss_pred HHHCCcccccCCCCcCCCccHHhhcCHHHHHHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHHhhhhHHHhHHHH
Confidence 999999999999999999999999999999999999999999999875 344566678899999998876789999998
Q ss_pred -----ccCChhHHHHHHHhcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcch
Q 038854 224 -----KDLGIEHLEFIHEHKTAALLEAAVVLGAILGG-GTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAGK 297 (353)
Q Consensus 224 -----~~~~~~~~~~i~~~KTg~L~~~~~~lga~lag-~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g~ 297 (353)
..+++++|..|+++|||+||++||++|++++| ++++.++.+++||.++|+||||+||++|++++++.+||++|+
T Consensus 161 l~~~~~~~t~~~y~~i~~~KTg~L~~~a~~~Ga~lag~a~~~~~~~l~~~g~~lGlAFQI~DDiLD~~gd~~~~GK~~g~ 240 (317)
T 4f62_A 161 LSSENKNISLAELEQMHVHKTGALIKASVRMGALSTGQVKPEQLAKLDAYAHAIGLAFQVQDDIIDLTSDTETLGKTQFS 240 (317)
T ss_dssp HHTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTC------------
T ss_pred HhccCCCCCHHHHHHHHHhchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHhhCCCcch
Confidence 34688999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred hhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhccC
Q 038854 298 DLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEKAVPLIALANYIAYRQN 353 (353)
Q Consensus 298 Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~~~~~~~~L~~l~~~i~~R~~ 353 (353)
|+++||+|||+++|+++|++.++++.++|++.|+.||+ ..+.|.++++|+++|++
T Consensus 241 Dl~egK~T~p~l~gle~a~~~a~~~~~~A~~~L~~l~~-~~~~L~~l~~~~~~R~~ 295 (317)
T 4f62_A 241 DAEANKATYPKLLGLDGAKALVVRLHEQAIAQISEFGD-KSQPLTDLANYIIDRNH 295 (317)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG-GGHHHHHHHHHHHC---
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999985 45899999999999974
|
| >3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} | Back alignment and structure |
|---|
| >3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A* | Back alignment and structure |
|---|
| >3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
| >1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A* | Back alignment and structure |
|---|
| >2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
| >3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A | Back alignment and structure |
|---|
| >3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens} | Back alignment and structure |
|---|
| >3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
| >3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A* | Back alignment and structure |
|---|
| >3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1 | Back alignment and structure |
|---|
| >1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 | Back alignment and structure |
|---|
| >3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A* | Back alignment and structure |
|---|
| >3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} | Back alignment and structure |
|---|
| >3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
| >2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A* | Back alignment and structure |
|---|
| >3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni} | Back alignment and structure |
|---|
| >2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima} | Back alignment and structure |
|---|
| >1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
| >3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* | Back alignment and structure |
|---|
| >3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A* | Back alignment and structure |
|---|
| >3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B* | Back alignment and structure |
|---|
| >3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A | Back alignment and structure |
|---|
| >3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor} | Back alignment and structure |
|---|
| >3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A* | Back alignment and structure |
|---|
| >1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A | Back alignment and structure |
|---|
| >3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A* | Back alignment and structure |
|---|
| >3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori} | Back alignment and structure |
|---|
| >1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A | Back alignment and structure |
|---|
| >2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ... | Back alignment and structure |
|---|
| >2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1 | Back alignment and structure |
|---|
| >2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... | Back alignment and structure |
|---|
| >1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A* | Back alignment and structure |
|---|
| >1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A | Back alignment and structure |
|---|
| >3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A* | Back alignment and structure |
|---|
| >3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B* | Back alignment and structure |
|---|
| >3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A* | Back alignment and structure |
|---|
| >3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus} | Back alignment and structure |
|---|
| >2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* | Back alignment and structure |
|---|
| >4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis} | Back alignment and structure |
|---|
| >4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A* | Back alignment and structure |
|---|
| >3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... | Back alignment and structure |
|---|
| >4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis} | Back alignment and structure |
|---|
| >3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
| >3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor} | Back alignment and structure |
|---|
| >2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1 | Back alignment and structure |
|---|
| >3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A | Back alignment and structure |
|---|
| >4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP} | Back alignment and structure |
|---|
| >2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima} | Back alignment and structure |
|---|
| >3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B* | Back alignment and structure |
|---|
| >3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* | Back alignment and structure |
|---|
| >2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... | Back alignment and structure |
|---|
| >3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 353 | ||||
| d1rqja_ | 299 | a.128.1.1 (A:) Farnesyl diphosphate synthase (gera | 8e-57 | |
| d1rtra_ | 290 | a.128.1.1 (A:) Farnesyl diphosphate synthase (gera | 2e-47 | |
| d1v4ea_ | 280 | a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Th | 2e-29 | |
| d2q80a1 | 291 | a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate s | 2e-28 | |
| d1fpsa_ | 348 | a.128.1.1 (A:) Farnesyl diphosphate synthase (gera | 5e-24 |
| >d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]} Length = 299 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Terpenoid synthases superfamily: Terpenoid synthases family: Isoprenyl diphosphate synthases domain: Farnesyl diphosphate synthase (geranyltranstransferase) species: Escherichia coli [TaxId: 562]
Score = 184 bits (468), Expect = 8e-57
Identities = 119/296 (40%), Positives = 156/296 (52%), Gaps = 12/296 (4%)
Query: 68 DFKSYMIQKASTVNQALDAAVS--LKDPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGG 125
DF + NQAL ++ + E+M+Y L GGKR+RP L A + G
Sbjct: 2 DFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGV 61
Query: 126 HESMAMPAACSIEMIHTMSLIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYA 185
+ A ++E IH SLIHDDLP MD+D LRRG PT H +GE A+LAGDAL A
Sbjct: 62 STNTLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLA 121
Query: 186 FEHIA-VCTKGVSPARIVRAIAELAKYIGADGLVAGQA------EKDLGIEHLEFIHEHK 238
F ++ VS + I+ELA G G+ GQA K + ++ LE IH HK
Sbjct: 122 FSILSDADMPEVSDRDRISMISELASASGIAGMCGGQALDLDAEGKHVPLDALERIHRHK 181
Query: 239 TAALLEAAVVLGAILGGGTDNEVEKL-RTFARCIGLLFQVVDDILDLTKSSKELGKTAGK 297
T AL+ AAV LGA+ G + +A IGL FQV DDILD+ + LGK G
Sbjct: 182 TGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQGA 241
Query: 298 DLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQE--KAVPLIALANYIAYR 351
D K TYP LLG+E+++K A L DA+Q L + ++ L ALA+YI R
Sbjct: 242 DQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQR 297
|
| >d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]} Length = 290 | Back information, alignment and structure |
|---|
| >d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]} Length = 280 | Back information, alignment and structure |
|---|
| >d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} Length = 291 | Back information, alignment and structure |
|---|
| >d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]} Length = 348 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 353 | |||
| d1rqja_ | 299 | Farnesyl diphosphate synthase (geranyltranstransfe | 100.0 | |
| d1rtra_ | 290 | Farnesyl diphosphate synthase (geranyltranstransfe | 100.0 | |
| d2q80a1 | 291 | Geranylgeranyl pyrophosphate synthetase {Human (Ho | 100.0 | |
| d1fpsa_ | 348 | Farnesyl diphosphate synthase (geranyltranstransfe | 100.0 | |
| d1v4ea_ | 280 | Octoprenyl-diphosphate synthase {Thermotoga mariti | 100.0 | |
| d1ezfa_ | 333 | Squalene synthase {Human (Homo sapiens) [TaxId: 96 | 95.35 | |
| d2q80a1 | 291 | Geranylgeranyl pyrophosphate synthetase {Human (Ho | 86.64 |
| >d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Terpenoid synthases superfamily: Terpenoid synthases family: Isoprenyl diphosphate synthases domain: Farnesyl diphosphate synthase (geranyltranstransferase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.1e-63 Score=470.42 Aligned_cols=287 Identities=42% Similarity=0.611 Sum_probs=258.8
Q ss_pred ccHHHHHHHHHHHHHHHHHHHhCCC--CchhHHHHHHHhHhCCCcchHHHHHHHHHHHhCCCccccccHHHHHHHHHHHH
Q 038854 67 FDFKSYMIQKASTVNQALDAAVSLK--DPVKIHESMRYSLLAGGKRVRPVLCLAACDLVGGHESMAMPAACSIEMIHTMS 144 (353)
Q Consensus 67 ~~~~~~l~~~~~~v~~~l~~~~~~~--~p~~l~~~~~y~~~~gGKr~Rp~L~ll~~~~~g~~~~~~~~lA~avEliH~as 144 (353)
|+|..+++..++.||+.|.+.+... .+..+.++++|.+..||||+||.|++++++++|++.+.++++|+++|++|+||
T Consensus 1 m~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~l~e~~~y~~~~gGKrlRp~l~~~~~~~~g~~~~~~~~~A~aiEllH~as 80 (299)
T d1rqja_ 1 MDFPQQLEACVKQANQALSRFIAPLPFQNTPVVETMQYGALLGGKRLRPFLVYATGHMFGVSTNTLDAPAAAVECIHAYS 80 (299)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTSSSTTSHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHhhcCCCCchHHHHHHHHhhCCcccHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHH
Confidence 7899999999999999999988653 23459999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCCCCCCCCCCcccccChhHHHHHHHHHHHHHHHHHHhccC-CCChHHHHHHHHHHHHHHhhhhhhhhccc
Q 038854 145 LIHDDLPCMDNDPLRRGKPTNHTIYGEDVAVLAGDALLAYAFEHIAVCTK-GVSPARIVRAIAELAKYIGADGLVAGQAE 223 (353)
Q Consensus 145 LIHDDI~~iD~s~~RRG~pt~h~~~G~~~Avl~GD~Ll~~a~~~l~~~~~-~~~~~~~~~~~~~l~~~i~~~~l~~GQ~~ 223 (353)
||||||||+|++++|||+||+|.+||++.|||+||+|++.+++.+++... .........++.+++.+.+..++++||.+
T Consensus 81 LiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~GQ~l 160 (299)
T d1rqja_ 81 LIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAFSILSDADMPEVSDRDRISMISELASASGIAGMCGGQAL 160 (299)
T ss_dssp HHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHHHHHHHSCCTTCCHHHHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred HHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999988899999999999999999999999999999999999997643 23455667788888887666688999998
Q ss_pred ------ccCChhHHHHHHHhcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhhCCCcc
Q 038854 224 ------KDLGIEHLEFIHEHKTAALLEAAVVLGAILGG-GTDNEVEKLRTFARCIGLLFQVVDDILDLTKSSKELGKTAG 296 (353)
Q Consensus 224 ------~~~~~~~~~~i~~~KTg~L~~~~~~lga~lag-~~~~~~~~l~~~g~~lG~afQI~DDild~~~~~~~~GK~~g 296 (353)
...+.++|+.|+.+|||+||.++|.+|+.+++ .+++..+.+++||.++|++|||+||++|++++++.+||+.|
T Consensus 161 dl~~~~~~~~~~~~~~i~~~KT~~l~~~~~~~~a~~~~~~~~~~~~~l~~~g~~lGiaFQi~DD~lD~~~~~~~~GK~~g 240 (299)
T d1rqja_ 161 DLDAEGKHVPLDALERIHRHKTGALIRAAVRLGALSAGDKGRRALPVLDKYAESIGLAFQVQDDILDVVGDTATLGKRQG 240 (299)
T ss_dssp HHHTTTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHSSCTT
T ss_pred HHHhccCcccHHHHHHHHHHHHhhHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhcCCchh
Confidence 34578899999999999999999999887654 55666788999999999999999999999999999999999
Q ss_pred hhhhcCCCcHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCCC--hHHHHHHHHHHHhccC
Q 038854 297 KDLVADKLTYPKLLGIEESKKLADKLNKDAQQQLSEFDQEK--AVPLIALANYIAYRQN 353 (353)
Q Consensus 297 ~Dl~~gk~T~p~l~~le~a~~~~~~~~~~A~~~L~~~~~~~--~~~L~~l~~~i~~R~~ 353 (353)
+|+++||+|||++++++++++.++++.+++++.|+.++... .+.|.++++|+++|++
T Consensus 241 ~Dl~egK~Tlp~i~~le~a~~~~~~~~~~~~~~l~~l~~~~~~~~~L~~l~~~i~~R~K 299 (299)
T d1rqja_ 241 ADQQLGKSTYPALLGLEQARKKARDLIDDARQSLKQLAEQSLDTSALEALADYIIQRNK 299 (299)
T ss_dssp HHHHHTCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHCCC
T ss_pred hHHHCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999886433 3889999999999975
|
| >d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|