Citrus Sinensis ID: 039009

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
Protein Sequence
MADEHKHEEPAGESVMEKITEKIHGHDSSSSSSSSDTDDDKKSSTSSLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRSLKDKKKA
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHccccccccccccccccccccccHccHHHHHHccccccHHHHcccccHHHEEEEHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHcccc
Coil and Loop (DISEMBL)
madehkheepagesVMEKITEKihghdssssssssdtdddkksstsslKTKVFRLfgrekpvhkvlgggkpadvFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWsnastfinksppripevyipeepVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLskiprslkdkkka
Flexible Loop (DISEMBL)
madehkheepagesVMEKITEKIhghdssssssssdtdddkksstsslktkvfrlfgrekpvhkvlgggkpadvFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQyavfdakvlskiprslkdkkka
Low Complexity Region (SEG)
MADEHKHEEPAGESVMEKITEKIHGHdssssssssdtdddkksstssLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRSLKDKKKA
Disordered region (IsUnstruct)
***************************************************VFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLS************
Disordered Region (DISOPRED)
******************************************************************GGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLS************
Disordered Region (DISEMBL)
*************SVMEKITE**************************LKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIP*********
Disordered Region (DISPRO)
*************************************************TKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPR********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADEHKHEEPAGESVMEKITEKIHGHDSSSSSSSSDTDDDKKSSTSSLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRSLKDKKKA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	256	2.2.26 [Sep-21-2011]
Q9SUT9	271	Reticulon-like protein B2	yes	no	0.996	0.940	0.696	1e-93
Q9SH59	255	Reticulon-like protein B3	no	no	0.933	0.937	0.711	6e-92
Q9SUR3	275	Reticulon-like protein B1	no	no	0.996	0.927	0.664	2e-90
O82352	255	Reticulon-like protein B5	no	no	0.984	0.988	0.652	8e-90
Q9FFS0	257	Reticulon-like protein B4	no	no	0.980	0.976	0.673	1e-88
Q6DBN4	253	Reticulon-like protein B6	no	no	0.976	0.988	0.637	2e-83
Q9M145	244	Reticulon-like protein B7	no	no	0.906	0.950	0.518	3e-60
Q9SS37	247	Reticulon-like protein B8	no	no	0.925	0.959	0.437	1e-56
Q9LJQ5	225	Reticulon-like protein B9	no	no	0.851	0.968	0.4	5e-46
Q8GYH6	226	Reticulon-like protein B1	no	no	0.863	0.977	0.315	4e-32

>sp|Q9SUT9|RTNLB_ARATH Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1

 Score =  342 bits (878), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 188/270 (69%), Positives = 222/270 (82%), Gaps = 15/270 (5%)

Query: 1   MADEHKHEE------PA-----GESVMEKITEKIHGHDSSSSSSSSDTDDDKKSSTSSLK 49
           MADEHKHEE      PA      ES+MEK++EKIH    SSSSSSSD +++KKSS+SS K
Sbjct: 1   MADEHKHEESSPNLDPAVEVVERESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPK 60

Query: 50  TK---VFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLT 106
           +    V+RLFGRE+PVHKVLGGGKPAD+F+W++KK+S GV GGAT  WVLF+L+EYHLLT
Sbjct: 61  SLKSKVYRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLT 120

Query: 107 LVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLRE 166
           L+CH +IVALAVLFLWSNA+ FI+KSPP+IPEV+IPEEP+LQLAS LR EINR  + LRE
Sbjct: 121 LLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLRE 180

Query: 167 IASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEK 226
           IASGRD+KKFLS IAGLWV+SI+G   +FLTL YI  VLL TVP+ Y+KYED+VDS+ EK
Sbjct: 181 IASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEK 240

Query: 227 AWAEIKKQYAVFDAKVLSKIPRS-LKDKKK 255
           A AE+KKQYAV DAKV SKIPR  LKDKKK
Sbjct: 241 AMAELKKQYAVLDAKVFSKIPRGPLKDKKK 270

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH59|RTNLC_ARATH Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1

 Score =  337 bits (864), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 175/246 (71%), Positives = 203/246 (82%), Gaps = 7/246 (2%)

Query: 1   MADEHKHEEPAGESVMEKITEKIHGHDSSSSSSSSDTDDDKKSSTSSLKTKVFRLFGREK 60
           MA+EHKHEE    S+MEKI+EKIHGHD SSSSSS         +++SLKTK++RLFGRE+
Sbjct: 1   MAEEHKHEE----SIMEKISEKIHGHDDSSSSSSDSD---DDKNSASLKTKIYRLFGREQ 53

Query: 61  PVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLF 120
           P+HK+ GGGKPAD+FLWRNKK+S GVLG AT  W+LF+LLEY+LLTL  H  I+ALAVLF
Sbjct: 54  PLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLF 113

Query: 121 LWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVI 180
           LWS+ASTFI+KSP  IPEV+IPE+ VLQLAS LR EINR FT+LR+IASGRDLKKFL VI
Sbjct: 114 LWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVI 173

Query: 181 AGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDA 240
           AGLWV+S VGS CNFLTL YI  VLL T+PV+YEKYED+VD F EKA  EIKKQY  FD 
Sbjct: 174 AGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDV 233

Query: 241 KVLSKI 246
           KVLSK+
Sbjct: 234 KVLSKV 239

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUR3|RTNLA_ARATH Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1

 Score =  331 bits (849), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 182/274 (66%), Positives = 213/274 (77%), Gaps = 19/274 (6%)

Query: 1   MADEHKHEE------PA-----GESVMEKITEKIHGHDSSSSSSSSDTDDDKKSSTSSLK 49
           MA+EHKH+E      PA      ES+M+KI+EKIH    SSSSSSS  D+D+K  T    
Sbjct: 1   MAEEHKHDESVIAPEPAVEVVERESLMDKISEKIHHGGDSSSSSSSSDDEDEKKKTKKPS 60

Query: 50  TK-------VFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEY 102
           +        V+RLFGRE+PVHKVLGGGKPAD+F+W+NKK+S GVLGGATA WV+F+L+EY
Sbjct: 61  SPSSSMKSKVYRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEY 120

Query: 103 HLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFT 162
           HLLTL+CH +IV LAVLFLWSNA+ FINKSPP+IPEV+IPEEP+LQLAS LR EINR F+
Sbjct: 121 HLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFS 180

Query: 163 LLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDS 222
            LREIASGRDLKKFL  IAGLWV+SI+G   NFLTL YI  VLL TVP+ Y+KYED+VD 
Sbjct: 181 SLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDP 240

Query: 223 FSEKAWAEIKKQYAVFDAKVLSKIPRS-LKDKKK 255
             EKA  E+KKQYAV D KVLSKIP   LK+KKK
Sbjct: 241 LGEKAMIELKKQYAVLDEKVLSKIPLGPLKNKKK 274

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|O82352|RTNLE_ARATH Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1

 Score =  330 bits (845), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 167/256 (65%), Positives = 207/256 (80%), Gaps = 4/256 (1%)

Query: 1   MADEHKHEEPAGESVMEKITEKIHGHDSSSSSSSSDTDDDKKSSTSSLKTKVFRLFGREK 60
           MA+E +   P  ES+MEKI+EKIH HDSSSSS S     +K  S S++K K++R+FGREK
Sbjct: 1   MAEEIEKSVPTEESLMEKISEKIHHHDSSSSSESEY---EKPDSPSAVKAKIYRMFGREK 57

Query: 61  PVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLF 120
           PVHKVLGGGKPADVFLWR+KK+S  VLG ATAIWVLF+L+EYHLL+L+CH  I+AL  LF
Sbjct: 58  PVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLF 117

Query: 121 LWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVI 180
           LWSNA T INK+ P+IPE+++PEE  L +AS+LR E+N+AF +LR IA GRDLKKFL V+
Sbjct: 118 LWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVV 177

Query: 181 AGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDA 240
            GLW++S+VG+W NFLTL YI FV+LHTVP++YEK+ED+VD  +EKA  E++KQY VFD 
Sbjct: 178 VGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDE 237

Query: 241 KVLSKIP-RSLKDKKK 255
           KVLSKIP  SLK K K
Sbjct: 238 KVLSKIPIASLKAKAK 253

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FFS0|RTNLD_ARATH Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1

 Score =  326 bits (835), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 175/260 (67%), Positives = 201/260 (77%), Gaps = 9/260 (3%)

Query: 1   MADEHKHEEPAGESVMEKITEKIHGHDSSSSSSSSDTDDDKKSSTSSLKTK-VFRLFGRE 59
           M ++HKHEE    S++EKI EKIHGH  SSS S SD D    SS+SS     ++RLFGRE
Sbjct: 1   MVEDHKHEE----SILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGRE 56

Query: 60  KPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVL 119
           KPVHKVLGGGKPAD+FLWRNKK+S GVLG  TA WVLF+L EYHLL  +CH  I ALA L
Sbjct: 57  KPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAAL 116

Query: 120 FLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSV 179
           FLWSNA TFI+KS P IPEV+IPE+P+LQL S LR EINR  TLLR IASG+D+KKF+ V
Sbjct: 117 FLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILV 176

Query: 180 IAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFD 239
           IAGLWV+SI+GS  NFLTLFY   VLL T+PV+YEKYED+VD++ EKA  EIKKQYAV D
Sbjct: 177 IAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLD 236

Query: 240 AKVL----SKIPRSLKDKKK 255
            KVL    SKIPR   +KKK
Sbjct: 237 EKVLRKVISKIPRGALNKKK 256

Plays a role in the Agrobacterium-mediated plant transformation via its interaction with VirB2, the major component of the T-pilus.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBN4|RTNLF_ARATH Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1

 Score =  308 bits (790), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 162/254 (63%), Positives = 199/254 (78%), Gaps = 4/254 (1%)

Query: 1   MADEHKHEEPAGESVMEKITEKIHGHDSSSSSSSSDTDDDKKSSTSSLKTKVFRLFGREK 60
           MA+E +      ES+MEKI +KI       SSSSSD++ +K  S S+LK K++RLFGREK
Sbjct: 1   MAEELEKSMHKEESLMEKIADKI---HDHDSSSSSDSEHEKPESPSALKAKIYRLFGREK 57

Query: 61  PVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLF 120
           PVHKVLGGG PADVFLWR+KK+SA VLG ATAIWVLF+L+EYH L+LVCH LI ALA LF
Sbjct: 58  PVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALF 117

Query: 121 LWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVI 180
           L SNA  F+NK+PP+IPE++I EE  L + SALR E+N+AF +LR IA GRDLKKFL V+
Sbjct: 118 LLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVV 177

Query: 181 AGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDA 240
            GLW++S+VG+W NFLTL YI FV+LHTVP++YEK+ED+VD  +EK   E+KK Y VFD 
Sbjct: 178 FGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDE 237

Query: 241 KVLSKIP-RSLKDK 253
           KVLSK+P  SLK K
Sbjct: 238 KVLSKLPVASLKAK 251

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M145|RTNLG_ARATH Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=3 SV=2

 Score =  231 bits (590), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/239 (51%), Positives = 167/239 (69%), Gaps = 7/239 (2%)

Query: 10  PAGESVMEKIT-EKIHGHDSSSSSSSSDTDDDKKSSTSSLKTKVFRLFGREKPVHKVLGG 68
           P  E +M  I  E+I+G DS +SS S     +K  S   +   ++R+FGRE+P+H VLGG
Sbjct: 11  PLEEPLMGNIVPEEINGLDSLTSSDSDS---EKPDSPVPINAPIYRMFGRERPIHMVLGG 67

Query: 69  GKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTF 128
           GKPADV LWR+KK++ G+L   T IW+LF      LLT +C   I+ L + FLWSNA   
Sbjct: 68  GKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLWSNA--- 124

Query: 129 INKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSI 188
           +NKSP  + ++YIPE+P+LQ ASA+ FE+N AF  LR IA  RD+K F+  + GLW+VS+
Sbjct: 125 LNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSV 184

Query: 189 VGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIP 247
           +G+W +FL+L YI FVL+HTVP++YEKYED +D  +EKA  E+KK Y VF+AK LSKIP
Sbjct: 185 IGNWFSFLSLLYICFVLIHTVPMLYEKYEDEIDPIAEKAVIEMKKHYQVFEAKFLSKIP 243

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS37|RTNLH_ARATH Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1

 Score =  219 bits (559), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 108/247 (43%), Positives = 156/247 (63%), Gaps = 10/247 (4%)

Query: 1   MADEHKHEEPAGESVMEKITEKIHGHDSSSSSSSSDTDDDKKSSTSSLKTKVFRLFGREK 60
           M D++  E+  G+ V +  TE +  +   SS    +          S+ ++  RLF R+K
Sbjct: 1   MPDKNIVEDVIGDLV-DNFTETVQKNKHGSSFFEQE---------DSVSSRFNRLFDRQK 50

Query: 61  PVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLF 120
           P+H VLGGGK ADV LWRNKKISA VL GATAIWVLF+ + +H L+LVC+ L++ +   F
Sbjct: 51  PIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQF 110

Query: 121 LWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVI 180
           +WSNAS F+N+S  R+P + +P++   ++  A+  E+NR    L+++A   +LK+FL  +
Sbjct: 111 VWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAV 170

Query: 181 AGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDA 240
            GLWV ++VGS CNFLT+ YI FV  HT+PV+YE+YED VD F +    +    Y   D 
Sbjct: 171 IGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMDSMIMKFHSHYKKLDT 230

Query: 241 KVLSKIP 247
             LS+IP
Sbjct: 231 GFLSRIP 237

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJQ5|RTNLI_ARATH Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1

 Score =  184 bits (467), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 90/225 (40%), Positives = 141/225 (62%), Gaps = 7/225 (3%)

Query: 31  SSSSSDTDDDKKSSTSSLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGA 90
           + SSSD++D++    ++      +LF R++ +H + GGGK AD+ LWR  KI+A ++ G 
Sbjct: 5   TGSSSDSEDERTIHKTT------KLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGV 58

Query: 91  TAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLA 150
           + +W L +++EY+ +TL+CH  + ++   F+WS AS F+N   P IPEV + E    QLA
Sbjct: 59  SILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLA 118

Query: 151 SALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVP 210
            +     N+  T L ++A GRD   F      L++VSI+G++ NF+ L +I FV + T+P
Sbjct: 119 RSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLP 178

Query: 211 VIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPR-SLKDKK 254
           V+YE YED VD+ + K   ++KK Y   D  VLSKIPR ++K+KK
Sbjct: 179 VMYEMYEDDVDTAAGKLMRKMKKLYKKVDTNVLSKIPRGTVKNKK 223

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GYH6|RTNLP_ARATH Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2 SV=1

 Score =  138 bits (347), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 119/222 (53%), Gaps = 1/222 (0%)

Query: 33  SSSDTDDDKKSSTSSLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATA 92
           S SD D D         +  +RL GR+  VH+ +GGGK AD+ LWR + +S GV+  +T 
Sbjct: 3   SLSDIDGDFDGRNEGGSSSDYRLLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTV 62

Query: 93  IWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASA 152
            W++F+      L++    L++ + + F+ +  S F N+    +PE+ + EE V   A++
Sbjct: 63  AWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAAS 122

Query: 153 LRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVI 212
            R ++N    +  ++  G D + F  V+  LW++S +GS+ +  TL YI  +L  T+P +
Sbjct: 123 FRIKLNHLLVMAHDVTVGNDFRLFFKVVICLWLLSAIGSYISLCTLLYIGTILSVTIPAL 182

Query: 213 YEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRSL-KDK 253
           Y KY+ +VD         +   Y + D  V+S++  SL KDK
Sbjct: 183 YSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSLSKDK 224

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
255537629	260	conserved hypothetical protein [Ricinus	1.0	0.984	0.792	1e-107
359474299	256	PREDICTED: uncharacterized protein LOC10	0.980	0.980	0.785	1e-107
297742260	252	unnamed protein product [Vitis vinifera]	0.980	0.996	0.785	1e-107
358248944	254	uncharacterized protein LOC100811024 [Gl	0.984	0.992	0.792	1e-106
356513327	254	PREDICTED: reticulon-like protein B2-lik	0.984	0.992	0.792	1e-105
255645926	253	unknown [Glycine max]	0.980	0.992	0.785	1e-104
217072252	260	unknown [Medicago truncatula] gi|3884968	0.996	0.980	0.768	1e-103
224058427	254	predicted protein [Populus trichocarpa]	0.976	0.984	0.790	1e-102
356513329	267	PREDICTED: reticulon-like protein B2-lik	0.984	0.943	0.750	1e-102
192910708	254	24 kDa seed maturation protein [Elaeis g	0.988	0.996	0.730	1e-101

>gi|255537629|ref|XP_002509881.1| conserved hypothetical protein [Ricinus communis] gi|223549780|gb|EEF51268.1| conserved hypothetical protein [Ricinus communis]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/260 (79%), Positives = 232/260 (89%), Gaps = 4/260 (1%)

Query: 1   MADEHKHEEPAGESVMEKITEKIHGHDSSSSSSSSDTDD---DKKSSTSSLKTKVFRLFG 57
           MADEH HEE  GES+M+KI+EKIHGHDSSSSS S + +       SS SS+K+K++RLFG
Sbjct: 1   MADEHHHEESKGESLMDKISEKIHGHDSSSSSDSDNDEKLKPKSPSSPSSIKSKIYRLFG 60

Query: 58  REKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALA 117
           REKPVH VLGGGKPAD+FLWRNKK+SAGVLG ATA+WVLF+L+EYHLLTL+CH  I+ALA
Sbjct: 61  REKPVHHVLGGGKPADIFLWRNKKVSAGVLGFATAVWVLFELIEYHLLTLICHGFILALA 120

Query: 118 VLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFL 177
           +LFLWSNASTFINKSPP IPEV+IPEEPVLQ+A+ALR EIN AF +LR+IASGRDLKKFL
Sbjct: 121 ILFLWSNASTFINKSPPHIPEVHIPEEPVLQVAAALRMEINYAFAILRDIASGRDLKKFL 180

Query: 178 SVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAV 237
           SVIAGLWV+SIVGSWCNFLTLFYI FVLLHTVPV YEKYED+VD+F+EKA  EIKKQYAV
Sbjct: 181 SVIAGLWVLSIVGSWCNFLTLFYIAFVLLHTVPVFYEKYEDKVDAFAEKAAIEIKKQYAV 240

Query: 238 FDAKVLSKIPRS-LKDKKKA 256
           FDAKVLSKIPR  LKDKKKA
Sbjct: 241 FDAKVLSKIPRGPLKDKKKA 260

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474299|ref|XP_002277080.2| PREDICTED: uncharacterized protein LOC100267262 [Vitis vinifera]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/257 (78%), Positives = 224/257 (87%), Gaps = 6/257 (2%)

Query: 1   MADEHKHEEPAGESVMEKITEKIHGHDSSSSSSSSDTDDDKKSSTSSLKTKVFRLFGREK 60
           MAD         ES+MEKI+EKIHGHDSSSS S ++      SS S+ K KV+R+FGREK
Sbjct: 5   MADHEDSTPSPVESMMEKISEKIHGHDSSSSDSDNEK-----SSPSAFKAKVYRIFGREK 59

Query: 61  PVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLF 120
           PVHKVLGGGKPADV LWRNKKISAGVLGGATA+W+LF+LLEYHLLTLVCHC I+ALA+LF
Sbjct: 60  PVHKVLGGGKPADVVLWRNKKISAGVLGGATAVWILFELLEYHLLTLVCHCSILALAILF 119

Query: 121 LWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVI 180
           LWSNA+TFINK+PP IPEV+IPE+PVLQ ASALR EINR FTLLR +ASG+DLKKFLSVI
Sbjct: 120 LWSNATTFINKAPPHIPEVHIPEDPVLQFASALRIEINRGFTLLRNVASGKDLKKFLSVI 179

Query: 181 AGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDA 240
           AGLWVVSIVGSWCNFLTLFYIVFVLLHTVPV+YEKYED VDSF+EKA  EIK+QYAVFDA
Sbjct: 180 AGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVLYEKYEDPVDSFAEKAMVEIKRQYAVFDA 239

Query: 241 KVLSKIPRS-LKDKKKA 256
           KVLS+IPR  LKDKK A
Sbjct: 240 KVLSRIPRGPLKDKKIA 256

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742260|emb|CBI34409.3| unnamed protein product [Vitis vinifera]

 Score =  392 bits (1008), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 202/257 (78%), Positives = 224/257 (87%), Gaps = 6/257 (2%)

Query: 1   MADEHKHEEPAGESVMEKITEKIHGHDSSSSSSSSDTDDDKKSSTSSLKTKVFRLFGREK 60
           MAD         ES+MEKI+EKIHGHDSSSS S ++      SS S+ K KV+R+FGREK
Sbjct: 1   MADHEDSTPSPVESMMEKISEKIHGHDSSSSDSDNEK-----SSPSAFKAKVYRIFGREK 55

Query: 61  PVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLF 120
           PVHKVLGGGKPADV LWRNKKISAGVLGGATA+W+LF+LLEYHLLTLVCHC I+ALA+LF
Sbjct: 56  PVHKVLGGGKPADVVLWRNKKISAGVLGGATAVWILFELLEYHLLTLVCHCSILALAILF 115

Query: 121 LWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVI 180
           LWSNA+TFINK+PP IPEV+IPE+PVLQ ASALR EINR FTLLR +ASG+DLKKFLSVI
Sbjct: 116 LWSNATTFINKAPPHIPEVHIPEDPVLQFASALRIEINRGFTLLRNVASGKDLKKFLSVI 175

Query: 181 AGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDA 240
           AGLWVVSIVGSWCNFLTLFYIVFVLLHTVPV+YEKYED VDSF+EKA  EIK+QYAVFDA
Sbjct: 176 AGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVLYEKYEDPVDSFAEKAMVEIKRQYAVFDA 235

Query: 241 KVLSKIPRS-LKDKKKA 256
           KVLS+IPR  LKDKK A
Sbjct: 236 KVLSRIPRGPLKDKKIA 252

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248944|ref|NP_001239711.1| uncharacterized protein LOC100811024 [Glycine max] gi|255641581|gb|ACU21063.1| unknown [Glycine max]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 203/256 (79%), Positives = 225/256 (87%), Gaps = 4/256 (1%)

Query: 1   MADEHKHEEPAGESVMEKITEKIHGHDSSSSSSSSDTDDDKKSSTSSLKTKVFRLFGREK 60
           MA+ H+HEE  GES++EKI+ KI       SSSSSD+D++K S++ SLK+KVFRLFGREK
Sbjct: 1   MAEHHEHEEVKGESLLEKISGKI---HDHDSSSSSDSDNEKTSASDSLKSKVFRLFGREK 57

Query: 61  PVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLF 120
           P+H VLGGGKPADVFLWRNKKISA  LG ATAIWVLF+LLEYHLLTLVCH LI+ LAVLF
Sbjct: 58  PIHHVLGGGKPADVFLWRNKKISASTLGVATAIWVLFELLEYHLLTLVCHFLILGLAVLF 117

Query: 121 LWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVI 180
           LWSNASTFINKSPP+IP+V+IPE+PVL+ ASALR EINRAF LLR+IASGRDLKKFLSVI
Sbjct: 118 LWSNASTFINKSPPKIPQVHIPEKPVLEFASALRVEINRAFALLRDIASGRDLKKFLSVI 177

Query: 181 AGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDA 240
           AGLWV SI+GSW NFLTLFYI FVLLHTVPV+YEKYED VDSF  KA AEIKKQYAVFDA
Sbjct: 178 AGLWVFSILGSWANFLTLFYIAFVLLHTVPVLYEKYEDHVDSFGGKAIAEIKKQYAVFDA 237

Query: 241 KVLSKIPRS-LKDKKK 255
           KVLSKIPR  LKDKKK
Sbjct: 238 KVLSKIPRGPLKDKKK 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513327|ref|XP_003525365.1| PREDICTED: reticulon-like protein B2-like isoform 1 [Glycine max]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 203/256 (79%), Positives = 223/256 (87%), Gaps = 4/256 (1%)

Query: 1   MADEHKHEEPAGESVMEKITEKIHGHDSSSSSSSSDTDDDKKSSTSSLKTKVFRLFGREK 60
           MA+ H+HEE  GES++EKI+ KI       SSSSSD+D+DK S+T S K+ VFRLFGREK
Sbjct: 1   MAEHHEHEEVKGESLLEKISGKI---HDHDSSSSSDSDNDKTSATDSFKSNVFRLFGREK 57

Query: 61  PVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLF 120
           P+H VLGGGKPADVFLWRNKKISA  LG ATAIWVLF+LLEYHLLTLVCH LI+ALA LF
Sbjct: 58  PIHHVLGGGKPADVFLWRNKKISASTLGVATAIWVLFELLEYHLLTLVCHFLILALAGLF 117

Query: 121 LWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVI 180
           LWSNASTFINKSPP+IP+V+IPEEPVL+ ASALR EINRAF +LR+IASGRDLKKFLSVI
Sbjct: 118 LWSNASTFINKSPPKIPQVHIPEEPVLKFASALRIEINRAFAVLRDIASGRDLKKFLSVI 177

Query: 181 AGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDA 240
           AGLWV SI+G W NFLTLFYI FVLLHTVPV+YEKYED VDSF EKA AEIKKQYAVFDA
Sbjct: 178 AGLWVFSILGCWANFLTLFYIAFVLLHTVPVLYEKYEDHVDSFGEKAIAEIKKQYAVFDA 237

Query: 241 KVLSKIPRS-LKDKKK 255
           KVLSKIPR  LKDKKK
Sbjct: 238 KVLSKIPRGPLKDKKK 253

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645926|gb|ACU23452.1| unknown [Glycine max]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 201/256 (78%), Positives = 221/256 (86%), Gaps = 5/256 (1%)

Query: 1   MADEHKHEEPAGESVMEKITEKIHGHDSSSSSSSSDTDDDKKSSTSSLKTKVFRLFGREK 60
           MA+ H+HEE  GES++EKI +         SSSSSD+D+DK S+T S K+ VFRLFGREK
Sbjct: 1   MAEHHEHEEVKGESLLEKIGKIH----DHDSSSSSDSDNDKTSATDSFKSNVFRLFGREK 56

Query: 61  PVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLF 120
           P+H VLGGGKPADVFLWRNKKISA  LG ATAIWVLF+LLEYHLLTLVCH LI+ALA LF
Sbjct: 57  PIHHVLGGGKPADVFLWRNKKISASTLGVATAIWVLFELLEYHLLTLVCHFLILALAGLF 116

Query: 121 LWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVI 180
           LWSNASTFINKSPP+IP+V+IPEEPVL+ ASALR EINRAF +LR+IASGRDLKKFLSVI
Sbjct: 117 LWSNASTFINKSPPKIPQVHIPEEPVLKFASALRIEINRAFAVLRDIASGRDLKKFLSVI 176

Query: 181 AGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDA 240
           AGLWV SI+G W NFLTLFYI FVLLHTVPV+YEKYED VDSF EKA AEIKKQYAVFDA
Sbjct: 177 AGLWVFSILGCWANFLTLFYIAFVLLHTVPVLYEKYEDHVDSFGEKAIAEIKKQYAVFDA 236

Query: 241 KVLSKIPRS-LKDKKK 255
           KVLSKIPR  LKDKKK
Sbjct: 237 KVLSKIPRGPLKDKKK 252

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072252|gb|ACJ84486.1| unknown [Medicago truncatula] gi|388496820|gb|AFK36476.1| unknown [Medicago truncatula]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 199/259 (76%), Positives = 224/259 (86%), Gaps = 4/259 (1%)

Query: 1   MADEHKHEEPAGESVMEKITEKIHGHDSSSSSSSSDTDDDKK---SSTSSLKTKVFRLFG 57
           MAD ++HEE   ES+++KI+ KIH H  SSSSSS   +D K+   SS +SLK KVFRLFG
Sbjct: 1   MADHNEHEEVKSESLLDKISGKIHDHHDSSSSSSDSDNDKKEKKVSSPTSLKNKVFRLFG 60

Query: 58  REKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALA 117
           REKP+H VLGGGKPADVFLWRNKKISA  LG ATA+WVLF+LLEYHLLTL+ H  I+ALA
Sbjct: 61  REKPLHNVLGGGKPADVFLWRNKKISATTLGVATALWVLFELLEYHLLTLISHLAILALA 120

Query: 118 VLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFL 177
           VLFLWSNASTFINKSPP+IP+V+IPEEPVLQ+ASA+R EINRAF +LR+IASGRDLK+FL
Sbjct: 121 VLFLWSNASTFINKSPPKIPQVHIPEEPVLQIASAIRIEINRAFAILRDIASGRDLKQFL 180

Query: 178 SVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAV 237
           SVIAGLWV+SIVGSW NFLTLFYI FVLLHTVPV+YEKYEDRVDSF EKA  E KKQYAV
Sbjct: 181 SVIAGLWVLSIVGSWTNFLTLFYIAFVLLHTVPVLYEKYEDRVDSFGEKALHEFKKQYAV 240

Query: 238 FDAKVLSKIPRS-LKDKKK 255
           FD KVLSKIP+  LKDKKK
Sbjct: 241 FDEKVLSKIPKGPLKDKKK 259

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224058427|ref|XP_002299504.1| predicted protein [Populus trichocarpa] gi|118482989|gb|ABK93406.1| unknown [Populus trichocarpa] gi|222846762|gb|EEE84309.1| predicted protein [Populus trichocarpa]

 Score =  377 bits (968), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 200/253 (79%), Positives = 225/253 (88%), Gaps = 3/253 (1%)

Query: 4   EHKHEEPAGESVMEKITEKIHGHDSSSSSSSSDTDDDKKSSTSSLKTKVFRLFGREKPVH 63
           EH  ++   ESV EKI+EK HGHDSSS S S    +  KS+  SLK+K++RLFGREKPVH
Sbjct: 3   EHDKDDSVVESVTEKISEKTHGHDSSSVSDS--DHEKSKSNPDSLKSKIYRLFGREKPVH 60

Query: 64  KVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWS 123
           KVLGGGKPADVFLWRNKKISAGVLGGATAIWVLF+LLEY+L+TLVCHCLI+ALA+LFLWS
Sbjct: 61  KVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFELLEYNLVTLVCHCLILALALLFLWS 120

Query: 124 NASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGL 183
           NASTFINKSPPRIPEV IPEEPVLQ A+ALR EIN+ F++LR+IASGRDLK FL+VIAGL
Sbjct: 121 NASTFINKSPPRIPEVCIPEEPVLQTAAALRIEINQGFSVLRDIASGRDLKNFLTVIAGL 180

Query: 184 WVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVL 243
           WV+SIVGSWCNF+TLFYI FVLLHTVPV YEKYED+VD+F+EKA  EIKKQYAVFDAKVL
Sbjct: 181 WVLSIVGSWCNFVTLFYIAFVLLHTVPVFYEKYEDQVDAFAEKAMIEIKKQYAVFDAKVL 240

Query: 244 SKIPRS-LKDKKK 255
           SKIPR  LKDKK+
Sbjct: 241 SKIPRGPLKDKKR 253

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513329|ref|XP_003525366.1| PREDICTED: reticulon-like protein B2-like isoform 2 [Glycine max]

 Score =  376 bits (965), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 202/269 (75%), Positives = 222/269 (82%), Gaps = 17/269 (6%)

Query: 1   MADEHKHEEPAGESVMEKITEKIHGHDSSSSSSSSDTDDDKKSSTSSLKTKVFRLFGREK 60
           MA+ H+HEE  GES++EKI+ KI       SSSSSD+D+DK S+T S K+ VFRLFGREK
Sbjct: 1   MAEHHEHEEVKGESLLEKISGKI---HDHDSSSSSDSDNDKTSATDSFKSNVFRLFGREK 57

Query: 61  PVHKVLGGGK-------------PADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTL 107
           P+H VLGGGK              ADVFLWRNKKISA  LG ATAIWVLF+LLEYHLLTL
Sbjct: 58  PIHHVLGGGKRMRLPSFFLLSFFSADVFLWRNKKISASTLGVATAIWVLFELLEYHLLTL 117

Query: 108 VCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREI 167
           VCH LI+ALA LFLWSNASTFINKSPP+IP+V+IPEEPVL+ ASALR EINRAF +LR+I
Sbjct: 118 VCHFLILALAGLFLWSNASTFINKSPPKIPQVHIPEEPVLKFASALRIEINRAFAVLRDI 177

Query: 168 ASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKA 227
           ASGRDLKKFLSVIAGLWV SI+G W NFLTLFYI FVLLHTVPV+YEKYED VDSF EKA
Sbjct: 178 ASGRDLKKFLSVIAGLWVFSILGCWANFLTLFYIAFVLLHTVPVLYEKYEDHVDSFGEKA 237

Query: 228 WAEIKKQYAVFDAKVLSKIPRS-LKDKKK 255
            AEIKKQYAVFDAKVLSKIPR  LKDKKK
Sbjct: 238 IAEIKKQYAVFDAKVLSKIPRGPLKDKKK 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192910708|gb|ACF06462.1| 24 kDa seed maturation protein [Elaeis guineensis]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 187/256 (73%), Positives = 220/256 (85%), Gaps = 3/256 (1%)

Query: 1   MADEHKHEEPAGESVMEKITEKIHGHDSSSSSSSSDTDDDKKSSTSSLKTKVFRLFGREK 60
           MA+  +      ES+MEKI EK+HG    SSSSS   ++  + S SS+K K++RLFGRE+
Sbjct: 1   MAEHSEEASSKPESLMEKIAEKLHG--DDSSSSSDSDNEKSEPSASSVKAKIYRLFGREE 58

Query: 61  PVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLF 120
           PVHKVLGGGKPADVFLWRNKKISAGVLGGATA+WVLF+LL+YHLLTLV HCL+++LA+LF
Sbjct: 59  PVHKVLGGGKPADVFLWRNKKISAGVLGGATAVWVLFELLDYHLLTLVGHCLVLSLAILF 118

Query: 121 LWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVI 180
           LWSNASTFINK PP IPEV IPE+  + +A +LR+EINRAF +LR+IASGRDLKKFL+VI
Sbjct: 119 LWSNASTFINKIPPHIPEVSIPEDVAINVALSLRYEINRAFAVLRDIASGRDLKKFLAVI 178

Query: 181 AGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDA 240
           AGLWV+SI+GS CNFLTLFYI+FV LHTVPV+YEKYED+VDSF+EKA AEIKKQY VFDA
Sbjct: 179 AGLWVLSILGSCCNFLTLFYILFVTLHTVPVLYEKYEDKVDSFAEKAMAEIKKQYVVFDA 238

Query: 241 KVLSKIPRS-LKDKKK 255
           KVLSKIPR  LKDKK+
Sbjct: 239 KVLSKIPRGPLKDKKQ 254

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
TAIR|locus:2128494	275	BTI1 "VIRB2-interacting protei	0.996	0.927	0.638	3.5e-88
TAIR|locus:2128238	271	BTI2 "VIRB2-interacting protei	0.996	0.940	0.655	8.6e-88
TAIR|locus:2160447	257	BTI3 "VIRB2-interacting protei	0.980	0.976	0.638	4.9e-85
TAIR|locus:2062882	255	AT2G46170 [Arabidopsis thalian	0.984	0.988	0.613	2e-81
TAIR|locus:2082772	264	AT3G61560 [Arabidopsis thalian	0.968	0.939	0.468	1.2e-49
TAIR|locus:2089663	225	AT3G18260 "AT3G18260" [Arabido	0.796	0.906	0.419	4.5e-43
TAIR|locus:2049077	201	AT2G15280 "AT2G15280" [Arabido	0.734	0.935	0.345	6.2e-30
TAIR|locus:2080315	203	AT3G54120 "AT3G54120" [Arabido	0.652	0.822	0.353	6.2e-30
TAIR|locus:1005716554	249	AT3G10915 [Arabidopsis thalian	0.710	0.730	0.298	1.2e-28
TAIR|locus:2046783	206	RTNLB13 "AT2G23640" [Arabidops	0.714	0.888	0.236	4.7e-16

TAIR|locus:2128494 BTI1 "VIRB2-interacting protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 834 (298.6 bits), Expect = 3.5e-88, Sum P(2) = 3.5e-88
 Identities = 168/263 (63%), Positives = 197/263 (74%)

Query:     1 MADEHKHEEPAGESVMEKITEKIH--GHXXXXXXXXXXXXXXXXXX-----XXXLKTKVF 53
             +A E   E    ES+M+KI+EKIH  G                           +K+KV+
Sbjct:    12 IAPEPAVEVVERESLMDKISEKIHHGGDSSSSSSSSDDEDEKKKTKKPSSPSSSMKSKVY 71

Query:    54 RLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLI 113
             RLFGRE+PVHKVLGGGKPAD+F+W+NKK+S GVLGGATA WV+F+L+EYHLLTL+CH +I
Sbjct:    72 RLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMI 131

Query:   114 VALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDL 173
             V LAVLFLWSNA+ FINKSPP+IPEV+IPEEP+LQLAS LR EINR F+ LREIASGRDL
Sbjct:   132 VVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDL 191

Query:   174 KKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKK 233
             KKFL  IAGLWV+SI+G   NFLTL YI  VLL TVP+ Y+KYED+VD   EKA  E+KK
Sbjct:   192 KKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKK 251

Query:   234 QYAVFDAKVLSKIPRS-LKDKKK 255
             QYAV D KVLSKIP   LK+KKK
Sbjct:   252 QYAVLDEKVLSKIPLGPLKNKKK 274

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

TAIR|locus:2128238 BTI2 "VIRB2-interacting protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
 Identities = 177/270 (65%), Positives = 207/270 (76%)

Query:     1 MADEHKHEE------PA-----GESVMEKITEKIH--GHXXXXXXXXXXXXXXXXXXX-X 46
             MADEHKHEE      PA      ES+MEK++EKIH  G                      
Sbjct:     1 MADEHKHEESSPNLDPAVEVVERESLMEKLSEKIHHKGDSSSSSSSDDENEKKSSSSSPK 60

Query:    47 XLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLT 106
              LK+KV+RLFGRE+PVHKVLGGGKPAD+F+W++KK+S GV GGAT  WVLF+L+EYHLLT
Sbjct:    61 SLKSKVYRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLT 120

Query:   107 LVCHCLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLRE 166
             L+CH +IVALAVLFLWSNA+ FI+KSPP+IPEV+IPEEP+LQLAS LR EINR  + LRE
Sbjct:   121 LLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLRE 180

Query:   167 IASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEK 226
             IASGRD+KKFLS IAGLWV+SI+G   +FLTL YI  VLL TVP+ Y+KYED+VDS+ EK
Sbjct:   181 IASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEK 240

Query:   227 AWAEIKKQYAVFDAKVLSKIPRS-LKDKKK 255
             A AE+KKQYAV DAKV SKIPR  LKDKKK
Sbjct:   241 AMAELKKQYAVLDAKVFSKIPRGPLKDKKK 270

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2160447 BTI3 "VIRB2-interacting protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 851 (304.6 bits), Expect = 4.9e-85, P = 4.9e-85
 Identities = 166/260 (63%), Positives = 192/260 (73%)

Query:     1 MADEHKHEEPAGESVMEKITEKIHGHXXXXXXXXXXXXX-XXXXXXXXLKTKVFRLFGRE 59
             M ++HKHEE    S++EKI EKIHGH                       K+K++RLFGRE
Sbjct:     1 MVEDHKHEE----SILEKIVEKIHGHGDSSSLSDSDDDKKSTSSSSSSFKSKIYRLFGRE 56

Query:    60 KPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVL 119
             KPVHKVLGGGKPAD+FLWRNKK+S GVLG  TA WVLF+L EYHLL  +CH  I ALA L
Sbjct:    57 KPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAAL 116

Query:   120 FLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSV 179
             FLWSNA TFI+KS P IPEV+IPE+P+LQL S LR EINR  TLLR IASG+D+KKF+ V
Sbjct:   117 FLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILV 176

Query:   180 IAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFD 239
             IAGLWV+SI+GS  NFLTLFY   VLL T+PV+YEKYED+VD++ EKA  EIKKQYAV D
Sbjct:   177 IAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLD 236

Query:   240 AKVL----SKIPRSLKDKKK 255
              KVL    SKIPR   +KKK
Sbjct:   237 EKVLRKVISKIPRGALNKKK 256

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2062882 AT2G46170 [Arabidopsis thaliana (taxid:3702)]

 Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
 Identities = 157/256 (61%), Positives = 195/256 (76%)

Query:     1 MADEHKHEEPAGESVMEKITEKIHGHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREK 60
             MA+E +   P  ES+MEKI+EKIH H                     +K K++R+FGREK
Sbjct:     1 MAEEIEKSVPTEESLMEKISEKIHHHDSSSSSESEYEKPDSPSA---VKAKIYRMFGREK 57

Query:    61 PVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLF 120
             PVHKVLGGGKPADVFLWR+KK+S  VLG ATAIWVLF+L+EYHLL+L+CH  I+AL  LF
Sbjct:    58 PVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLF 117

Query:   121 LWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVI 180
             LWSNA T INK+ P+IPE+++PEE  L +AS+LR E+N+AF +LR IA GRDLKKFL V+
Sbjct:   118 LWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVV 177

Query:   181 AGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDA 240
              GLW++S+VG+W NFLTL YI FV+LHTVP++YEK+ED+VD  +EKA  E++KQY VFD 
Sbjct:   178 VGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDE 237

Query:   241 KVLSKIP-RSLKDKKK 255
             KVLSKIP  SLK K K
Sbjct:   238 KVLSKIPIASLKAKAK 253

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0006007 "glucose catabolic process" evidence=RCA

TAIR|locus:2082772 AT3G61560 [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 125/267 (46%), Positives = 155/267 (58%)

Query:     1 MADEHKHEEPAGESVMEKITEKIHGHXXXXXXXXXXXXXXXXXXXXXLKTKVFRLFGREK 60
             MA+E +      ES+MEKI +KIH H                     LK K++RLFGREK
Sbjct:     1 MAEELEKSMHKEESLMEKIADKIHDHDSSSSSDSEHEKPESPSA---LKAKIYRLFGREK 57

Query:    61 PVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLF 120
             PVHKVLGGG PADVFLWR+KK+SA VLG ATAIWVLF+L+EYH L+LVCH LI ALA LF
Sbjct:    58 PVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALF 117

Query:   121 LWSNASTFINKSP-P--------RI-PEV-YIPEEPVLQLASALRFE-INRAFTLLREIA 168
             L SNA  F+NK   P        R  P + Y  E  + +    +  E I   +     + 
Sbjct:   118 LLSNAHAFMNKGTFPYDCFCTEKRAEPGLCYFKEHCLRKGLEEISHELIQSTYETFSIMG 177

Query:   169 SGRDLKKFLSVIAGLWVVSIVGSWCNFLT-LFYIVFVLLHTVPVIYEKYEDRVDSFSEKA 227
                    ++ +  G W V  +G  C  L  L    FV+LHTVP++YEK+ED+VD  +EK 
Sbjct:   178 FVTRTSIYIGISGGFWAVDNLG--CGKLVQLLDSCFVVLHTVPMLYEKHEDKVDPVAEKT 235

Query:   228 WAEIKKQYAVFDAKVLSKIP-RSLKDK 253
               E+KK Y VFD KVLSK+P  SLK K
Sbjct:   236 LKELKKHYMVFDEKVLSKLPVASLKAK 262

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2089663 AT3G18260 "AT3G18260" [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 86/205 (41%), Positives = 130/205 (63%)

Query:    51 KVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCH 110
             K  +LF R++ +H + GGGK AD+ LWR  KI+A ++ G + +W L +++EY+ +TL+CH
Sbjct:    19 KTTKLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICH 78

Query:   111 CLIVALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASG 170
               + ++   F+WS AS F+N   P IPEV + E    QLA +     N+  T L ++A G
Sbjct:    79 ASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACG 138

Query:   171 RDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAE 230
             RD   F      L++VSI+G++ NF+ L +I FV + T+PV+YE YED VD+ + K   +
Sbjct:   139 RDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRK 198

Query:   231 IKKQYAVFDAKVLSKIPR-SLKDKK 254
             +KK Y   D  VLSKIPR ++K+KK
Sbjct:   199 MKKLYKKVDTNVLSKIPRGTVKNKK 223

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2049077 AT2G15280 "AT2G15280" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 65/188 (34%), Positives = 106/188 (56%)

Query:    59 EKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAV 118
             E+ VH+ +  G  AD+ +W+N++    +LG  T +W LF+   Y     V +  ++++ +
Sbjct:     2 EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVI 61

Query:   119 LFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLS 178
             LFLW+ ++   N+  P++P + I EE V  +A A+R  IN    + REI  GR+ K+   
Sbjct:    62 LFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFR 121

Query:   179 VIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVF 238
             V   LW VS VG++ NFLT+ Y+  VL   +P +YE+Y+D +D         I+ QY   
Sbjct:   122 VSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKI 181

Query:   239 DAKVLSKI 246
             D ++L KI
Sbjct:   182 DERLLQKI 189

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080315 AT3G54120 "AT3G54120" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 59/167 (35%), Positives = 103/167 (61%)

Query:    54 RLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLI 113
             +LF R++ +H++LGGG  ADV LWR K +S G++    A W++F+   Y + TL+   L+
Sbjct:     7 KLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSVLL 66

Query:   114 VALAVLFLWSNASTFINKSPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDL 173
             + L++LFLWS +++ +N+  P +PE  I E    + +  LR  +N+   +  +IA  RD 
Sbjct:    67 LLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMARDS 126

Query:   174 KKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRV 220
             + +  V   L+++S++GS  +F TL +   +++ TVP  YE+YED +
Sbjct:   127 ELYTKVAVSLFLLSLIGSLMDFQTLCHTSVLVVMTVPAFYERYEDYI 173

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1005716554 AT3G10915 [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
 Identities = 55/184 (29%), Positives = 99/184 (53%)

Query:    72 ADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINK 131
             AD+ LWR + +S GV+  +T  W++F+      L++    L++ + + F+ +  S F N+
Sbjct:    64 ADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLIVIMISFVHARVSAFRNR 123

Query:   132 SPPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLS-VIAGLWVVSIVG 190
                 +PE+ + EE V   A++ R ++N    +  ++  G D + F   V+  LW++S +G
Sbjct:   124 QLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFRLFFKQVVICLWLLSAIG 183

Query:   191 SWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRSL 250
             S+ +  TL YI  +L  T+P +Y KY+ +VD         +   Y + D  V+S++  SL
Sbjct:   184 SYISLCTLLYIGTILSVTIPALYSKYQSKVDKCCGTIHRRLSHHYKIVDENVISRLSWSL 243

Query:   251 -KDK 253
              KDK
Sbjct:   244 SKDK 247

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2046783 RTNLB13 "AT2G23640" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 44/186 (23%), Positives = 91/186 (48%)

Query:    73 DVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKS 132
             D++LWR KK++   L  +T+ W+L     +  +T+V    I  ++++FLW +    ++K 
Sbjct:    18 DIYLWRRKKLAFSTLLVSTSTWILLSFYGFTTITIVSWIGIAVVSMIFLWGSLLRLLSKV 77

Query:   133 PPRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSW 192
              P +  + + EE V++   + R  +      +  + +  +   F   + G W++S +G+ 
Sbjct:    78 EPELSGLEVSEEFVVETVRSCRMLMEEMVRWMFRVGAESEWFVFARTVLGFWILSRIGNL 137

Query:   193 CNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVL---SKIPRS 249
              +F T  +I  V+  TVP ++E+Y D++         + K  Y     K+L   +K+   
Sbjct:   138 LDFHTCLFIGLVMGLTVPKLWEEYGDQIQKHLGSLKDKSKGAYNTTHEKILEMKNKLHHG 197

Query:   250 LKDKKK 255
              ++K K
Sbjct:   198 TEEKVK 203

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0005783 "endoplasmic reticulum" evidence=IEA;ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0071458 "integral to cytosolic side of endoplasmic reticulum membrane" evidence=IDA

GO:0071782 "endoplasmic reticulum tubular network" evidence=IDA

GO:0071786 "endoplasmic reticulum tubular network organization" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SH59	RTNLC_ARATH	No assigned EC number	0.7113	0.9335	0.9372	no	no
Q9SUT9	RTNLB_ARATH	No assigned EC number	0.6962	0.9960	0.9409	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00002515001 SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (252 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	256
pfam02453	164	pfam02453, Reticulon, Reticulon	6e-65

>gnl|CDD|217046 pfam02453, Reticulon, Reticulon

 Score =  199 bits (508), Expect = 6e-65
 Identities = 72/164 (43%), Positives = 102/164 (62%), Gaps = 1/164 (0%)

Query: 71  PADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFIN 130
            AD+ LWR+ K S  V G    IW+LF L  Y LL+++ + L++ LAV FLW  A   +N
Sbjct: 1   VADLLLWRDPKKSGVVFGSLLVIWLLFSLSGYSLLSVLSYLLLLLLAVTFLWRLAKKLLN 60

Query: 131 KSP-PRIPEVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIV 189
             P P  P+V + EE V ++A +LR  IN+A   LR +  G DL   L    GLW++S +
Sbjct: 61  AVPEPLDPDVTLSEETVEEIADSLRVLINKALKELRRLFLGEDLVDSLKAAVGLWLLSYL 120

Query: 190 GSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKK 233
           GS  + LTL YI  +L  TVP++YEKY+D +D++ EKA A++KK
Sbjct: 121 GSLFSGLTLLYIGVILAFTVPLLYEKYQDEIDAYVEKAKAKVKK 164

Reticulon, also know as neuroendocrine-specific protein (NSP), is a protein of unknown function which associates with the endoplasmic reticulum. This family represents the C-terminal domain of the three reticulon isoforms and their homologues. Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	256
KOG1792	230	consensus Reticulon [Intracellular trafficking, se	100.0
PF02453	169	Reticulon: Reticulon; InterPro: IPR003388 Eukaryot	100.0
PF04842	683	DUF639: Plant protein of unknown function (DUF639)	96.9
KOG1792	230	consensus Reticulon [Intracellular trafficking, se	93.45
PF06398	359	Pex24p: Integral peroxisomal membrane peroxin; Int	90.97
PF08372	156	PRT_C: Plant phosphoribosyltransferase C-terminal;	90.77
PF08372	156	PRT_C: Plant phosphoribosyltransferase C-terminal;	89.63

>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.2e-57  Score=401.94  Aligned_cols=214  Identities=61%  Similarity=0.987  Sum_probs=207.3

Q ss_pred             CCCCcccCCCccccccccccccCcccchhhhcCCCcccceecccccchhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHH
Q 039009           35 SDTDDDKKSSTSSLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIV  114 (256)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~r~f~r~~~~h~~Lgggk~aDlLlWrn~k~Sg~vf~~~t~~w~Lf~~~~yslltlv~~illl  114 (256)
                      +|++++++++++ .+++.+|+|+||+|+|+++|||+++|+++|||++.||++|++++++|++|+..+|+.+|++|+++++
T Consensus         8 ~~~~~~~~~~~s-~~~~~~rlf~~~~~v~~~lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll   86 (230)
T KOG1792|consen    8 SNSESEKLKFTS-AIEKSSRLFGREGPVHKVLGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLL   86 (230)
T ss_pred             cccccccccccc-ccchhccccCCCccccccCCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            388888877666 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhcc-CCC--CCC-ceecChHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHh
Q 039009          115 ALAVLFLWSNASTFINK-SPP--RIP-EVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVG  190 (256)
Q Consensus       115 ~l~~~fl~s~~~~~i~k-~~~--~~p-~~~isee~v~~~a~~v~~~iN~~l~~lr~I~~g~d~~~~lkv~~~L~vls~vG  190 (256)
                      .+.+.|.|++...+++| ++|  ..| ++++|||.+.+.+++++.++|+.+..+|++++|||+++|++++++||+++++|
T Consensus        87 ~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~lS~vG  166 (230)
T KOG1792|consen   87 ALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWILSYVG  166 (230)
T ss_pred             HHHHHHHHHHHHHHHhcCCCccccCCceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888 666  678 99999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Q 039009          191 SWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFSEKAWAEIKKQYAVFDAKVLSKIPRS  249 (256)
Q Consensus       191 s~~s~lTLl~i~~v~~FTvP~lYekyqd~ID~~~~~~~~~ik~~y~~~~~kvl~kiP~~  249 (256)
                      +|||++||+|+|++++||+|++||+|||+||++++++..+++++|+++|+|+++|||++
T Consensus       167 s~fn~lTll~ig~v~~~TvP~~YEky~d~ID~~~~~~~~~~k~~~~~~~~k~l~kip~~  225 (230)
T KOG1792|consen  167 SLFNFLTLLYIGLVLLFTVPVLYEKYEDQIDPYLGKVMEELKKHYRKFDEKVLSKIPAG  225 (230)
T ss_pred             HhhhHHHHHHHHHHHHhcccchhHHhHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence            99999999999999999999999999999999999999999999999999999999998

>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER)

Probab=100.00  E-value=2.5e-37  Score=258.97  Aligned_cols=163  Identities=39%  Similarity=0.653  Sum_probs=47.7

Q ss_pred             ccceecccccchhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhhhccCC------CCCCceecChH
Q 039009           71 PADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKSP------PRIPEVYIPEE  144 (256)
Q Consensus        71 ~aDlLlWrn~k~Sg~vf~~~t~~w~Lf~~~~yslltlv~~illl~l~~~fl~s~~~~~i~k~~------~~~p~~~isee  144 (256)
                      |+|+|+||||+.||.+|++++++|+++++.++|++|++|+++++.+++.+++.....++++.+      ++.++.++|||
T Consensus         1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (169)
T PF02453_consen    1 VADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKVLSRSPKGPFKEPLDYDLEISEE   80 (169)
T ss_dssp             ----------------------------------------------------THCCCTCCHHHHCTTHHHHCHHHHHCCH
T ss_pred             CceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCccccccccHH
Confidence            589999999999999999999999999999999999999999999999999888777777654      33347899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhchhHHHHHH
Q 039009          145 PVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKYEDRVDSFS  224 (256)
Q Consensus       145 ~v~~~a~~v~~~iN~~l~~lr~I~~g~d~~~~lkv~~~L~vls~vGs~~s~lTLl~i~~v~~FTvP~lYekyqd~ID~~~  224 (256)
                      .++++++.+.+.+|..+..+|+++.++|++.++++++++|+++++|+++|++||+|++++++||+|.+||+||++||+++
T Consensus        81 ~~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~l~~lg~~~s~~~L~~l~~~~~f~~P~ly~~~~~~Id~~~  160 (169)
T PF02453_consen   81 RVERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYILSFLGSWFSFLTLLYLGVLGAFTVPKLYEKYQEEIDQYV  160 (169)
T ss_dssp             HHHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG-----------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 039009          225 EKAWAEIKK  233 (256)
Q Consensus       225 ~~~~~~ik~  233 (256)
                      ++++++++|
T Consensus       161 ~~~~~~~~k  169 (169)
T PF02453_consen  161 AKVKEKVKK  169 (169)
T ss_dssp             ---------
T ss_pred             HHHHHHhcC
Confidence            998887764

Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.

>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function

Probab=96.90  E-value=0.0099  Score=60.33  Aligned_cols=134  Identities=17%  Similarity=0.174  Sum_probs=88.6

Q ss_pred             ccceecccccchhHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhhhccC--------CCCCC--cee
Q 039009           71 PADVFLWRNKKISAGVLGGATAIWVLFQLLEYHLLTLVCHCLIVALAVLFLWSNASTFINKS--------PPRIP--EVY  140 (256)
Q Consensus        71 ~aDlLlWrn~k~Sg~vf~~~t~~w~Lf~~~~yslltlv~~illl~l~~~fl~s~~~~~i~k~--------~~~~p--~~~  140 (256)
                      +.++..|+||.+|..+++..+.+ +.-.|.+|-+     -.+++.+++..+|....+-.++.        ||+-.  +-.
T Consensus       506 ~~~l~~We~P~kt~~Fl~~~~~i-I~r~wl~Y~~-----p~~Ll~~a~~Ml~~r~~~~~g~~~~~v~V~~pP~~nTvEqi  579 (683)
T PF04842_consen  506 LQKLASWEEPLKTLVFLALFLYI-IYRGWLGYIF-----PAFLLFSAVFMLWLRYQGRLGKSFGEVTVRDPPPKNTVEQI  579 (683)
T ss_pred             HHHHhhccCcchhHHHHHHHHHH-HHHHHHHHHH-----HHHHHHHHHHHHHHHhhhccCCccceEEecCCCCccHHHHH
Confidence            56889999999999988876653 1222333322     22233333334554332112221        11111  111


Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 039009          141 IPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVP  210 (256)
Q Consensus       141 isee~v~~~a~~v~~~iN~~l~~lr~I~~g~d~~~~lkv~~~L~vls~vGs~~s~lTLl~i~~v~~FTvP  210 (256)
                      +.-.....-++......|-++-++|.|++....+.+-+|++.|..++.+-..+.+--++...++-.||-.
T Consensus       580 lalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~~A~~LavvP~kyil~~v~l~~FTre  649 (683)
T PF04842_consen  580 LALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLGLAAVLAVVPFKYILLFVFLEVFTRE  649 (683)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            2222333345677788899999999999999999999999999999999999999999988888888854

>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.45  E-value=0.31  Score=43.78  Aligned_cols=79  Identities=14%  Similarity=0.166  Sum_probs=63.3

Q ss_pred             HHhhhhcccchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhc-----------------------hhH
Q 039009          163 LLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKY-----------------------EDR  219 (256)
Q Consensus       163 ~lr~I~~g~d~~~~lkv~~~L~vls~vGs~~s~lTLl~i~~v~~FTvP~lYeky-----------------------qd~  219 (256)
                      ...|++++||.+.++.+..+..++..+-.+++..++..++.+++++++.+|..+                       |+.
T Consensus        42 ~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~~~~k~~~~~~~lp~~i~ipee~  121 (230)
T KOG1792|consen   42 KVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVTFLNKKSEPGAYLPVEITIPEEF  121 (230)
T ss_pred             chhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCceeecCHHH
Confidence            577899999999999988888888888888888888888888888777766555                       567


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 039009          220 VDSFSEKAWAEIKKQYAVFDAK  241 (256)
Q Consensus       220 ID~~~~~~~~~ik~~y~~~~~k  241 (256)
                      ++++...+..+++...+++.+=
T Consensus       122 ~~~~a~~~~~~in~~l~~l~~i  143 (230)
T KOG1792|consen  122 VLALASSLRVEINQALSELRDI  143 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            7788888888888777766653

>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide

Probab=90.97  E-value=3.1  Score=39.07  Aligned_cols=40  Identities=18%  Similarity=0.230  Sum_probs=25.6

Q ss_pred             ccccccccccCcccchhhhcCCCcccceecccccchhHHHHHHHHH
Q 039009           47 SLKTKVFRLFGREKPVHKVLGGGKPADVFLWRNKKISAGVLGGATA   92 (256)
Q Consensus        47 ~~~~~~~r~f~r~~~~h~~Lgggk~aDlLlWrn~k~Sg~vf~~~t~   92 (256)
                      .+.++..++|-=+..++.+      .++++|+||..+-.++...+.
T Consensus        14 ~l~~~l~~~f~~~~~~d~v------l~il~W~~p~~t~~~L~l~t~   53 (359)
T PF06398_consen   14 RLSSRLGPIFPFQLILDRV------LRILTWTNPDYTLSFLLLYTF   53 (359)
T ss_pred             HHHHHHHHhhHHHHHHHHH------HHeEEeCCCCcchHHHHHHHH
Confidence            3444445555444434444      789999999988877666553

Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].

>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins

Probab=90.77  E-value=0.086  Score=44.67  Aligned_cols=49  Identities=24%  Similarity=0.331  Sum_probs=34.1

Q ss_pred             ccccccccccccCcccchhhhcC-----CCcccceecccccchhHHHHHHHHHH
Q 039009           45 TSSLKTKVFRLFGREKPVHKVLG-----GGKPADVFLWRNKKISAGVLGGATAI   93 (256)
Q Consensus        45 ~~~~~~~~~r~f~r~~~~h~~Lg-----ggk~aDlLlWrn~k~Sg~vf~~~t~~   93 (256)
                      +.+++.+..|+-.--.-+-.++|     |.++..++.||||..|++...+.++.
T Consensus        54 ~~~lr~Rydrlr~va~rvQ~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~  107 (156)
T PF08372_consen   54 PDSLRMRYDRLRSVAGRVQNVLGDVATQGERLQALLSWRDPRATALFVVFCLVA  107 (156)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHH
Confidence            45666666666443333455555     56689999999999999888776553

It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).

>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins

Probab=89.63  E-value=2.3  Score=36.04  Aligned_cols=66  Identities=15%  Similarity=0.054  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhc
Q 039009          151 SALRFEINRAFTLLREIASGRDLKKFLSVIAGLWVVSIVGSWCNFLTLFYIVFVLLHTVPVIYEKY  216 (256)
Q Consensus       151 ~~v~~~iN~~l~~lr~I~~g~d~~~~lkv~~~L~vls~vGs~~s~lTLl~i~~v~~FTvP~lYeky  216 (256)
                      +.+...+....+.++.++.++|...+..+++++++++++--+..+..++++..+-.++=|.+-.++
T Consensus        72 Q~vlgd~At~gERl~allsWrdP~aT~lf~~~clv~avvly~vP~r~l~l~~gly~~r~P~~R~~~  137 (156)
T PF08372_consen   72 QNVLGDVATQGERLQALLSWRDPRATALFVVFCLVAAVVLYFVPFRVLVLIWGLYKLRHPRFRNPL  137 (156)
T ss_pred             HHHHHHHHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCccccCCC
Confidence            344445556677899999999999999999999999988888788888777777777777776543

It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	256
2ko2_A	79	Reticulon-4; NOGO, membrane protein, peripheral, D	98.18
2g31_A	60	Reticulon-4; NOGO, helix, signaling protein; NMR {	97.44

>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}

Probab=98.18  E-value=3e-07  Score=68.11  Aligned_cols=58  Identities=28%  Similarity=0.273  Sum_probs=54.5

Q ss_pred             HHHHHHhhhccCCCCCC-------ceecChHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHH
Q 039009          121 LWSNASTFINKSPPRIP-------EVYIPEEPVLQLASALRFEINRAFTLLREIASGRDLKKFLS  178 (256)
Q Consensus       121 l~s~~~~~i~k~~~~~p-------~~~isee~v~~~a~~v~~~iN~~l~~lr~I~~g~d~~~~lk  178 (256)
                      +|..+.+.++|+...+|       |+.+|+|.++++++.+...+|.++..+|++++++|+..|+|
T Consensus        15 iYk~vlqavqKtd~~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlvDSLK   79 (79)
T 2ko2_A           15 IYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLK   79 (79)
T ss_dssp             HHHHTHHHHHCTTTTCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTTGGGC
T ss_pred             HHHHHHHHHHhCCCCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHHHhcC
Confidence            78888999999998888       88999999999999999999999999999999999998874

>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A

Probab=97.44  E-value=2.3e-06  Score=60.20  Aligned_cols=51  Identities=27%  Similarity=0.253  Sum_probs=44.3

Q ss_pred             HHHHHhhhccCCCCCC-------ceecChHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Q 039009          122 WSNASTFINKSPPRIP-------EVYIPEEPVLQLASALRFEINRAFTLLREIASGRD  172 (256)
Q Consensus       122 ~s~~~~~i~k~~~~~p-------~~~isee~v~~~a~~v~~~iN~~l~~lr~I~~g~d  172 (256)
                      |..+.+.++|+...+|       |+.+|+|.++++++.+...+|.++..+|++++++|
T Consensus         3 Yk~vlqavqKt~~~hPFk~yLd~di~ls~e~~~~~~~~~v~~in~~l~~lrrLfLVed   60 (60)
T 2g31_A            3 YKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD   60 (60)
T ss_dssp             CCTTTTHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHTSSCTTC
T ss_pred             HHHHHHHHHhCCCCCCchhccccCcCCCHHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence            3445566777777777       88999999999999999999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00