Citrus Sinensis ID: 039050

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MTEEALQISLANDPRGSPAKEQQAAGVGILLQIMMLVLSFVLGHVLRRLIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALISATDPITILYIFQGENVDNIEEL
Secondary Structure (PSIPRED)
cHHHHHHccccccccccccHHcccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHEEcccHHHHHHHHHHHHcccHHHHHHHHHHcccccHccc
Coil and Loop (DISEMBL)
MTEEALQISlandprgspakeqQAAGVGILLQIMMLVLSFVLGHVLRRLIVGALAnisntetniSYLGGVMFVMYRLPFVECLMFGalisatdpitilyifqgenvdnieel
Flexible Loop (DISEMBL)
MTEEALQIslandprgspaKEQQAAGVGILLQIMMLVLSFVLGHVLRRLIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALISATDPITILYIFQGENVDNIEEL
Low Complexity Region (SEG)
MTEEALQISLANDPRGSPAKEQQAAGVGILLQIMMLVLSFVLGHVLRRLIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALISATDPITILYIFQGENVDNIEEL
Disordered region (IsUnstruct)
************************AGVGILLQIMMLVLSFVLGHVLRRLIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALISATDPITILYIFQGEN*******
Disordered Region (DISOPRED)
************************AGVGILLQIMMLVLSFVLGHVLRRLIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALISATDPITILYIFQGENVDNIEEL
Disordered Region (DISEMBL)
MTEEALQISLA************AAGVGILLQIMMLVLSFVLGHVLRRLIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALISATDPITILYIFQGENVDNIEEL
Disordered Region (DISPRO)
*******************K*QQAAGVGILLQIMMLVLSFVLGHVLRRLIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALISATDPITILYIFQGENVDN****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTEEALQISLANDPRGSPAKEQQAAGVGILLQIMMLVLSFVLGHVLRRLIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALISATDPITILYIFQGENVDNIEEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
Q8RWU6	535	Sodium/hydrogen exchanger	yes	no	0.553	0.115	0.641	3e-15
Q8S396	521	Sodium/hydrogen exchanger	no	no	0.544	0.117	0.589	2e-14
Q92581	669	Sodium/hydrogen exchanger	yes	no	0.258	0.043	0.586	0.0005
Q8BZ00	644	Sodium/hydrogen exchanger	no	no	0.258	0.045	0.586	0.0009
Q8IVB4	645	Sodium/hydrogen exchanger	no	no	0.258	0.044	0.586	0.0009

>sp|Q8RWU6|NHX6_ARATH Sodium/hydrogen exchanger 6 OS=Arabidopsis thaliana GN=NHX6 PE=1 SV=3

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 52/81 (64%), Positives = 57/81 (70%), Gaps = 19/81 (23%)

Query: 1  MTEEALQISLA-NDPRGSPAKEQQAAGVGILLQIMMLVLSFVLGHVLRR----------- 48
          M+ E LQIS A +DP+G   K+QQAAGVGILLQIMMLVLSFVLGHVLRR           
Sbjct: 1  MSSE-LQISPAIHDPQGQE-KQQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASA 58

Query: 49 -----LIVGALANISNTETNI 64
               LIVG LANISNTET+I
Sbjct: 59 SLLIGLIVGGLANISNTETSI 79

Involved in trafficking to the vacuole. Required for cell proliferation and cell expansion, but not for cell differentiation. May act in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8S396|NHX5_ARATH Sodium/hydrogen exchanger 5 OS=Arabidopsis thaliana GN=NHX5 PE=2 SV=2

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 53/78 (67%), Gaps = 17/78 (21%)

Query: 3  EEALQISLANDPRGSPAKEQQAAGVGILLQIMMLVLSFVLGHVLRR-------------- 48
          EE +   + +DP+G   K+QQAAGVGILLQIMMLVLSFVLGHVLRR              
Sbjct: 2  EEVMISPVEHDPQGQ-VKQQQAAGVGILLQIMMLVLSFVLGHVLRRHRFHYLPEASGSLL 60

Query: 49 --LIVGALANISNTETNI 64
            LIVG LANIS+TET+I
Sbjct: 61 IGLIVGILANISDTETSI 78

Involved in trafficking to the vacuole. Required for cell proliferation and cell expansion, but not for cell differentiation. Acts in low affinity electroneutral exchange of protons for cations such as Na(+) or K(+) across membranes. May also exchange Li(+) and Cs(+) with a lower affinity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q92581|SL9A6_HUMAN Sodium/hydrogen exchanger 6 OS=Homo sapiens GN=SLC9A6 PE=1 SV=2

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 23/29 (79%)

Query: 79  FVECLMFGALISATDPITILYIFQGENVD 107
           F +CL+FGA++SATDP+T+L IF    VD
Sbjct: 217 FTDCLLFGAIVSATDPVTVLAIFHELQVD 245

Electroneutral exchange of protons for Na(+) and K(+) across the early and recycling endosome membranes. Contributes to calcium homeostasis.

Homo sapiens (taxid: 9606)

>sp|Q8BZ00|SL9A9_MOUSE Sodium/hydrogen exchanger 9 OS=Mus musculus GN=Slc9a9 PE=2 SV=1

 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 23/29 (79%)

Query: 79  FVECLMFGALISATDPITILYIFQGENVD 107
           F +CL FG+L+SATDP+T+L IF   +VD
Sbjct: 201 FTDCLFFGSLMSATDPVTVLAIFHELHVD 229

May act in electroneutral exchange of protons for Na(+) across membranes. Involved in the effusion of Golgi luminal H(+) in exchange for cytosolic cations. Involved in organelle ion homeostasis by contributing to the maintenance of the unique acidic pH values of the Golgi and post-Golgi compartments in the cell.

Mus musculus (taxid: 10090)

>sp|Q8IVB4|SL9A9_HUMAN Sodium/hydrogen exchanger 9 OS=Homo sapiens GN=SLC9A9 PE=1 SV=1

 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 23/29 (79%)

Query: 79  FVECLMFGALISATDPITILYIFQGENVD 107
           F +CL FG+L+SATDP+T+L IF   +VD
Sbjct: 201 FTDCLFFGSLMSATDPVTVLAIFHELHVD 229

May act in electroneutral exchange of protons for Na(+) across membranes. Involved in the effusion of Golgi luminal H(+) in exchange for cytosolic cations. Involved in organelle ion homeostasis by contributing to the maintenance of the unique acidic pH values of the Golgi and post-Golgi compartments in the cell.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
7715609	531	F20B17.4 [Arabidopsis thaliana]	0.937	0.197	0.530	2e-29
218201840	515	hypothetical protein OsI_30726 [Oryza sa	0.794	0.172	0.507	2e-25
222641228	631	hypothetical protein OsJ_28692 [Oryza sa	0.794	0.141	0.496	8e-25
90186409	456	putative Na+/H+ antiporter isoform 2 [Or	0.794	0.195	0.496	1e-24
222641793	381	hypothetical protein OsJ_29788 [Oryza sa	0.776	0.228	0.563	4e-24
357448255	553	Sodium/hydrogen exchanger [Medicago trun	0.901	0.182	0.436	7e-24
15982206	531	Na+/H+ antiporter, isoform 2 [Solanum ly	0.928	0.195	0.421	6e-23
125564146	383	hypothetical protein OsI_31802 [Oryza sa	0.776	0.227	0.451	3e-21
449492823	580	PREDICTED: sodium/hydrogen exchanger 6-l	0.553	0.106	0.65	1e-16
449443680	880	PREDICTED: sodium/hydrogen exchanger 6-l	0.553	0.070	0.65	1e-16

>gi|7715609|gb|AAF68127.1|AC010793_22 F20B17.4 [Arabidopsis thaliana]

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/162 (53%), Positives = 97/162 (59%), Gaps = 57/162 (35%)

Query: 1   MTEEALQISLA-NDPRGSPAKEQQAAGVGILLQIMMLVLSFVLGHVLRR----------- 48
           M+ E LQIS A +DP+G   K+QQAAGVGILLQIMMLVLSFVLGHVLRR           
Sbjct: 1   MSSE-LQISPAIHDPQGQE-KQQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASA 58

Query: 49  -----LIVGALANISNTETN------------------------------------ISYL 67
                LIVG LANISNTET+                                    I YL
Sbjct: 59  SLLIGLIVGGLANISNTETSIRFVELFLISFFRHGSISTMSSSFCFCCLPSYYILKIEYL 118

Query: 68  GGVMFVMYRLPFVECLMFGALISATDPITILYIFQ--GENVD 107
           GGVMF+MYRLPFVECLMFG+LISATDP+T+L IFQ  G +V+
Sbjct: 119 GGVMFLMYRLPFVECLMFGSLISATDPVTVLSIFQELGSDVN 160

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218201840|gb|EEC84267.1| hypothetical protein OsI_30726 [Oryza sativa Indica Group]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/142 (50%), Positives = 78/142 (54%), Gaps = 53/142 (37%)

Query: 19  AKEQQAAGVGILLQIMMLVLSFVLGHVLRR----------------LIVGALANISNTET 62
            KEQQ AGVGILLQI MLVLSFVLGHVLRR                L+VG LANISNTET
Sbjct: 28  GKEQQVAGVGILLQISMLVLSFVLGHVLRRHRFYYLPEASASLLIGLVVGGLANISNTET 87

Query: 63  NIS-------------------------------------YLGGVMFVMYRLPFVECLMF 85
           N S                                     YLGG+ F+MY+LPFVECLMF
Sbjct: 88  NTSQSGFSLSPKPFFANFGAIVTFAILGTFVASVVTGVLVYLGGLTFLMYKLPFVECLMF 147

Query: 86  GALISATDPITILYIFQGENVD 107
           GALISATDP+T+L IFQ    D
Sbjct: 148 GALISATDPVTVLSIFQELGTD 169

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222641228|gb|EEE69360.1| hypothetical protein OsJ_28692 [Oryza sativa Japonica Group]

 Score =  117 bits (293), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 77/143 (53%), Gaps = 54/143 (37%)

Query: 19  AKEQQAAGVGILLQIMMLVLSFVLGHVLRR----------------LIVGALANISNTET 62
            KEQQ AGVGILLQI MLVLSFVLGHVLRR                L+VG LANISNTET
Sbjct: 28  GKEQQVAGVGILLQISMLVLSFVLGHVLRRHRFYYLPEASASLLIGLVVGGLANISNTET 87

Query: 63  NIS--------------------------------------YLGGVMFVMYRLPFVECLM 84
           N                                        YLGG+ F+MY+LPFVECLM
Sbjct: 88  NTRTQSGFSLSPKPFFANFGAIVTFAILGTFIASVVTGVLVYLGGLTFLMYKLPFVECLM 147

Query: 85  FGALISATDPITILYIFQGENVD 107
           FGALISATDP+T+L IFQ    D
Sbjct: 148 FGALISATDPVTVLSIFQELGTD 170

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90186409|gb|ABD91508.1| putative Na+/H+ antiporter isoform 2 [Oryza sativa Indica Group]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 78/143 (54%), Gaps = 54/143 (37%)

Query: 19  AKEQQAAGVGILLQIMMLVLSFVLGHVLRR----------------LIVGALANISNTET 62
            KEQQ AGVGILLQI MLVLSFVLGHVLRR                L+VG LANISNTET
Sbjct: 28  GKEQQVAGVGILLQISMLVLSFVLGHVLRRHRFYYLPEASASLLIGLVVGGLANISNTET 87

Query: 63  N--------------------------------------ISYLGGVMFVMYRLPFVECLM 84
           N                                      + YLGG+ F+MY+LPFVECLM
Sbjct: 88  NTRTQSGFSLSPKPFFANFGAIVTFAILGTFVASVVTGVLVYLGGLTFLMYKLPFVECLM 147

Query: 85  FGALISATDPITILYIFQGENVD 107
           FGALISATDP+T+L IFQ    D
Sbjct: 148 FGALISATDPVTVLSIFQELGTD 170

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222641793|gb|EEE69925.1| hypothetical protein OsJ_29788 [Oryza sativa Japonica Group]

 Score =  115 bits (287), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 58/103 (56%), Positives = 74/103 (71%), Gaps = 16/103 (15%)

Query: 21  EQQAAGVGILLQIMMLVLSFVLGHVLRR----------------LIVGALANISNTETNI 64
           EQ+AAGVGILLQI MLV+SFVLGHV R                 +IVG LA ISNT+ +I
Sbjct: 33  EQKAAGVGILLQISMLVVSFVLGHVHRSRKVYYIPEASASLLIGMIVGGLAKISNTQRSI 92

Query: 65  SYLGGVMFVMYRLPFVECLMFGALISATDPITILYIFQGENVD 107
            Y+GG+++++Y+LP VEC+MFGAL+SATDP+T+L IFQ    D
Sbjct: 93  RYVGGLIYIVYKLPLVECMMFGALVSATDPVTVLSIFQELGTD 135

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448255|ref|XP_003594403.1| Sodium/hydrogen exchanger [Medicago truncatula] gi|355483451|gb|AES64654.1| Sodium/hydrogen exchanger [Medicago truncatula]

 Score =  114 bits (285), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/172 (43%), Positives = 87/172 (50%), Gaps = 71/172 (41%)

Query: 7   QISLANDPRGSPAKEQQAAGVGILLQIMMLVLSFVLGHVLRR----------------LI 50
           +IS A+  +  P KEQQAAGVGILLQIMMLVLSFVLGHVLRR                LI
Sbjct: 6   EISPADVHKAPPGKEQQAAGVGILLQIMMLVLSFVLGHVLRRKKIYIIPEASASLLIGLI 65

Query: 51  VGALANISN-----------------------TETNIS---------------------- 65
           VG LANIS+                       T++  S                      
Sbjct: 66  VGILANISDTETNISLCAHLFYHVFASLIPMFTQSGFSLAPKPFFSNFGAIVTFAIFGTF 125

Query: 66  ----------YLGGVMFVMYRLPFVECLMFGALISATDPITILYIFQGENVD 107
                     YLGG++F+MYRLPFVEC+MFGALISATDP+T+L IFQ    D
Sbjct: 126 LASFVTGALVYLGGLVFLMYRLPFVECMMFGALISATDPVTVLSIFQELGTD 177

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15982206|emb|CAC83608.1| Na+/H+ antiporter, isoform 2 [Solanum lycopersicum]

 Score =  111 bits (277), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/178 (42%), Positives = 89/178 (50%), Gaps = 74/178 (41%)

Query: 3   EEALQISLANDPRGSPAKEQQAAGVGILLQIMMLVLSFVLGHVLRR-------------- 48
           E+ LQIS A   +  P KEQQAAG GILLQIMMLVLSFV+GHVLRR              
Sbjct: 2   EDHLQISPAG-AKAIPGKEQQAAGYGILLQIMMLVLSFVIGHVLRRRHFYYIPEASASLL 60

Query: 49  --LIVGALANISNTETNI------------------------------------------ 64
             LIVG LAN+S+TET+I                                          
Sbjct: 61  IGLIVGGLANVSDTETSIRAWFNFHEEFFFLFLLPPIIFQSGFSLSPKPFFSNFGAIITF 120

Query: 65  --------SYLGGVM-------FVMYRLPFVECLMFGALISATDPITILYIFQGENVD 107
                   S++ G++       ++MYRLPFVECLMFGALISATDP+T+L IFQ    D
Sbjct: 121 AILGTFIASFVTGILVYLGGVTYLMYRLPFVECLMFGALISATDPVTVLSIFQELGTD 178

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|125564146|gb|EAZ09526.1| hypothetical protein OsI_31802 [Oryza sativa Indica Group]

 Score =  105 bits (262), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 61/135 (45%), Positives = 77/135 (57%), Gaps = 48/135 (35%)

Query: 21  EQQAAGVGILLQIMMLVLSFVLGHVLRR----------------LIVGALANISNTETNI 64
           EQ+AAGVGILLQI MLV+SFVLGHVLRR                +IVG LA ISNT+ +I
Sbjct: 36  EQKAAGVGILLQISMLVVSFVLGHVLRRRKVYYIPEASASLLIGMIVGGLAKISNTQRSI 95

Query: 65  S--------------------------------YLGGVMFVMYRLPFVECLMFGALISAT 92
           S                                Y+GG+++++Y+LP VEC+MFGAL+SAT
Sbjct: 96  SLAPKPFFSNFGAIITFAILGTFIASIVTGLLVYVGGLIYIVYKLPLVECMMFGALVSAT 155

Query: 93  DPITILYIFQGENVD 107
           DP+T+L IFQ    D
Sbjct: 156 DPVTVLSIFQELGTD 170

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449492823|ref|XP_004159112.1| PREDICTED: sodium/hydrogen exchanger 6-like [Cucumis sativus]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/80 (65%), Positives = 56/80 (70%), Gaps = 18/80 (22%)

Query: 3   EEALQISLAN--DPRGSPAKEQQAAGVGILLQIMMLVLSFVLGHVLRR------------ 48
           E+  QI L +  DP+GSP K+QQAAGVGILLQIMMLVLSFVLGHVLRR            
Sbjct: 58  EDEAQIMLISPADPKGSPVKDQQAAGVGILLQIMMLVLSFVLGHVLRRHRLYFLPEASAS 117

Query: 49  ----LIVGALANISNTETNI 64
               LIVG LANISNTETNI
Sbjct: 118 LLIGLIVGGLANISNTETNI 137

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443680|ref|XP_004139605.1| PREDICTED: sodium/hydrogen exchanger 6-like [Cucumis sativus]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 52/80 (65%), Positives = 56/80 (70%), Gaps = 18/80 (22%)

Query: 3   EEALQISLAN--DPRGSPAKEQQAAGVGILLQIMMLVLSFVLGHVLRR------------ 48
           E+  QI L +  DP+GSP K+QQAAGVGILLQIMMLVLSFVLGHVLRR            
Sbjct: 58  EDEAQIMLISPADPKGSPVKDQQAAGVGILLQIMMLVLSFVLGHVLRRHRLYFLPEASAS 117

Query: 49  ----LIVGALANISNTETNI 64
               LIVG LANISNTETNI
Sbjct: 118 LLIGLIVGGLANISNTETNI 137

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
TAIR|locus:2019853	535	NHX6 "Na+/H+ antiporter 6" [Ar	0.553	0.115	0.641	2.1e-29
TAIR|locus:2020068	521	NHX5 "sodium hydrogen exchange	0.571	0.122	0.538	2.9e-12
ZFIN|ZDB-GENE-041212-7	640	slc9a8 "solute carrier family	0.375	0.065	0.382	2.6e-05
WB|WBGene00003733	630	nhx-5 [Caenorhabditis elegans	0.553	0.098	0.422	0.00022
UNIPROTKB|F1SKE4	251	F1SKE4 "Sodium/hydrogen exchan	0.258	0.115	0.586	0.0003
UNIPROTKB|P26432	832	SLC9A3 "Sodium/hydrogen exchan	0.598	0.080	0.3	0.0003
ZFIN|ZDB-GENE-070424-104	697	slc9a6a "solute carrier family	0.589	0.094	0.391	0.00031
ZFIN|ZDB-GENE-060503-640	851	slc9a3.2 "solute carrier famil	0.598	0.078	0.3	0.00032
UNIPROTKB|F1NCB2	705	SLC9A6 "Sodium/hydrogen exchan	0.580	0.092	0.342	0.00032
TIGR_CMR|CBU_1590	417	CBU_1590 "monovalent cation/pr	0.464	0.124	0.410	0.00033

TAIR|locus:2019853 NHX6 "Na+/H+ antiporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 2.1e-29, Sum P(2) = 2.1e-29
 Identities = 52/81 (64%), Positives = 57/81 (70%)

Query:     1 MTEEALQISLA-NDPRGSPAKEQQAAGVGILLQIMMLVLSFVLGHVLRR----------- 48
             M+ E LQIS A +DP+G   K+QQAAGVGILLQIMMLVLSFVLGHVLRR           
Sbjct:     1 MSSE-LQISPAIHDPQGQE-KQQQAAGVGILLQIMMLVLSFVLGHVLRRHKFYYLPEASA 58

Query:    49 -----LIVGALANISNTETNI 64
                  LIVG LANISNTET+I
Sbjct:    59 SLLIGLIVGGLANISNTETSI 79

GO:0005737 "cytoplasm" evidence=ISM

GO:0006812 "cation transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA;ISS;RCA

GO:0006885 "regulation of pH" evidence=IEA

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005768 "endosome" evidence=IDA

GO:0010351 "lithium ion transport" evidence=RCA

TAIR|locus:2020068 NHX5 "sodium hydrogen exchanger 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 2.9e-12, P = 2.9e-12
 Identities = 35/65 (53%), Positives = 44/65 (67%)

Query:    43 GHVLRRLIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALISATDPITILYIFQ 102
             G ++   I+G     S     + YLGG M++MY+LPFVECLMFGALISATDP+T+L IFQ
Sbjct:   115 GAIVTFAIIGTFV-ASVVTGGLVYLGGSMYLMYKLPFVECLMFGALISATDPVTVLSIFQ 173

Query:   103 GENVD 107
                 D
Sbjct:   174 DVGTD 178

GO:0005737 "cytoplasm" evidence=ISM

GO:0006814 "sodium ion transport" evidence=IGI;ISS;RCA

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA;ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IGI;ISS

GO:0005768 "endosome" evidence=IDA

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0006869 "lipid transport" evidence=RCA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=RCA

GO:0010351 "lithium ion transport" evidence=IGI;RCA

GO:0016558 "protein import into peroxisome matrix" evidence=RCA

GO:0015081 "sodium ion transmembrane transporter activity" evidence=IGI

ZFIN|ZDB-GENE-041212-7 slc9a8 "solute carrier family 9 (sodium/hydrogen exchanger), member 8" [Danio rerio (taxid:7955)]

 Score = 86 (35.3 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
 Identities = 18/47 (38%), Positives = 27/47 (57%)

Query:    68 GGVMF-----VMYRLPFVECLMFGALISATDPITILYIFQGENVDNI 109
             GG+ F     V+Y++   +   FG+LISA DP+  + IF   NVD +
Sbjct:   230 GGIYFLGQADVIYKMTMTDSFAFGSLISAVDPVATIAIFNALNVDPV 276

GO:0006812 "cation transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006885 "regulation of pH" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

WB|WBGene00003733 nhx-5 [Caenorhabditis elegans (taxid:6239)]

 Score = 101 (40.6 bits), Expect = 0.00022, P = 0.00022
 Identities = 30/71 (42%), Positives = 42/71 (59%)

Query:    44 HVLRRLIVGALANISNTETNISYLG-G-VMFV---MYRL--PFVECLMFGALISATDPIT 96
             H  R   +G++  I    T IS  G G +MFV   ++++   F E L FGALISATDP+T
Sbjct:   183 HFFRN--IGSILAIVFIGTTISCFGTGCLMFVFTSIFQMGYSFKELLFFGALISATDPVT 240

Query:    97 ILYIFQGENVD 107
             I+ +F   NV+
Sbjct:   241 IISVFNDMNVE 251

GO:0006814 "sodium ion transport" evidence=IEA

GO:0006885 "regulation of pH" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

UNIPROTKB|F1SKE4 F1SKE4 "Sodium/hydrogen exchanger" [Sus scrofa (taxid:9823)]

 Score = 94 (38.1 bits), Expect = 0.00030, P = 0.00030
 Identities = 17/29 (58%), Positives = 23/29 (79%)

Query:    79 FVECLMFGALISATDPITILYIFQGENVD 107
             F +CL FG+L+SATDP+T+L IF   +VD
Sbjct:   201 FTDCLFFGSLMSATDPVTVLAIFHELHVD 229

GO:0016021 "integral to membrane" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA

GO:0006885 "regulation of pH" evidence=IEA

UNIPROTKB|P26432 SLC9A3 "Sodium/hydrogen exchanger 3" [Oryctolagus cuniculus (taxid:9986)]

 Score = 101 (40.6 bits), Expect = 0.00030, P = 0.00030
 Identities = 21/70 (30%), Positives = 44/70 (62%)

Query:    42 LGHVLRRLIVGALANISNTETNIS--YLGGVMFVMYRLPFVECLMFGALISATDPITILY 99
             LG +L   +VG + N + T  ++   +L G+M  + ++  ++ L+FG+LI+A DP+ +L 
Sbjct:   139 LGSILLYAVVGTVWNAATTGLSLYGVFLSGIMGEL-KIGLLDFLLFGSLIAAVDPVAVLA 197

Query:   100 IFQGENVDNI 109
             +F+  +V+ +
Sbjct:   198 VFEEVHVNEV 207

GO:0005515 "protein binding" evidence=IPI

GO:0005903 "brush border" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IDA

ZFIN|ZDB-GENE-070424-104 slc9a6a "solute carrier family 9 (sodium/hydrogen exchanger), member 6a" [Danio rerio (taxid:7955)]

 Score = 100 (40.3 bits), Expect = 0.00031, P = 0.00031
 Identities = 29/74 (39%), Positives = 39/74 (52%)

Query:    35 MLVLSFVLGHVLRRLIVGALA-NISNTETNISYLGGVMFVMYRLPFVECLMFGALISATD 93
             +L  +FV G V+   I+GAL          I +L    F      F +CL FGA++SATD
Sbjct:   199 ILAYAFV-GTVVSCFIIGALMYGCVMLMKKIGHLQDDFF------FTDCLFFGAIVSATD 251

Query:    94 PITILYIFQGENVD 107
             P+T+L IF    VD
Sbjct:   252 PVTVLAIFNELQVD 265

GO:0006812 "cation transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006885 "regulation of pH" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

ZFIN|ZDB-GENE-060503-640 slc9a3.2 "solute carrier family 9 (sodium/hydrogen exchanger), member 3.2" [Danio rerio (taxid:7955)]

 Score = 90 (36.7 bits), Expect = 0.00032, Sum P(2) = 0.00032
 Identities = 21/70 (30%), Positives = 38/70 (54%)

Query:    42 LGHVLRRLIVGALANISNTETNI--SYLGGVMFVMYRLPFVECLMFGALISATDPITILY 99
             LG +L   I+G   N       +   Y GG M  +  +  ++ L+FGAL+SA DP+ ++ 
Sbjct:   157 LGAILVHAIIGTCWNAGTVGIALWACYEGGAMGTL-NIGCLQFLLFGALMSAVDPVAVIA 215

Query:   100 IFQGENVDNI 109
             +F+  +V+ +
Sbjct:   216 VFEEVHVNEV 225

GO:0055085 "transmembrane transport" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0006885 "regulation of pH" evidence=IEA

GO:0015299 "solute:hydrogen antiporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA;IMP

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA

GO:0010447 "response to acidity" evidence=IDA

GO:0009651 "response to salt stress" evidence=IDA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

UNIPROTKB|F1NCB2 SLC9A6 "Sodium/hydrogen exchanger" [Gallus gallus (taxid:9031)]

 Score = 100 (40.3 bits), Expect = 0.00032, P = 0.00032
 Identities = 25/73 (34%), Positives = 42/73 (57%)

Query:    37 VLSFV-LGHVLRRLIVGALANISNTETNIS-YLGGVMFVMYRLPFVECLMFGALISATDP 94
             +L++  LG  +  L++G++         ++  LGG  +      F +CL+FGA++SATDP
Sbjct:   214 ILAYAFLGTAISCLVIGSVLYGCVALMKVTGQLGGDFY------FTDCLLFGAIVSATDP 267

Query:    95 ITILYIFQGENVD 107
             +T+L IF    VD
Sbjct:   268 VTVLAIFHELQVD 280

GO:0006885 "regulation of pH" evidence=IEA

GO:0015385 "sodium:hydrogen antiporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0055038 "recycling endosome membrane" evidence=IEA

TIGR_CMR|CBU_1590 CBU_1590 "monovalent cation/proton antiporter subunit, putative" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 97 (39.2 bits), Expect = 0.00033, P = 0.00033
 Identities = 23/56 (41%), Positives = 36/56 (64%)

Query:    51 VGALANISNTETN--ISYL--GGVMFVMYRLPFVECLMFGALISATDPITILYIFQ 102
             +G LA++S   +   I+++    + F+   LPF+ CL+FGALIS TDPI +L  F+
Sbjct:   100 IGMLASLSTIVSTVLIAFILYYFLQFLHLDLPFLYCLLFGALISPTDPIAVLATFK 155

GO:0005451 "monovalent cation:hydrogen antiporter activity" evidence=ISS

GO:0006812 "cation transport" evidence=ISS

GO:0015992 "proton transport" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: BRADI4G33420.1 annotation not avaliable (463 aa) (Brachypodium distachyon)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	112
TIGR00840	559	TIGR00840, b_cpa1, sodium/hydrogen exchanger 3	0.003

>gnl|CDD|233147 TIGR00840, b_cpa1, sodium/hydrogen exchanger 3

 Score = 35.1 bits (81), Expect = 0.003
 Identities = 12/29 (41%), Positives = 22/29 (75%)

Query: 79  FVECLMFGALISATDPITILYIFQGENVD 107
            ++ L+FG+LISA DP+ +L +F+  +V+
Sbjct: 131 LLDNLLFGSLISAVDPVAVLAVFEEYHVN 159

The Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36)The CPA1 family is a large family of proteins derived from Gram-positive and Gram-negative bacteria, blue green bacteria, yeast, plants and animals.Transporters from eukaryotes have been functionally characterized, and all of these catalyze Na+:H+ exchange. Their primary physiological functions may be in(1) cytoplasmic pH regulation, extruding the H+ generated during metabolism, and (2) salt tolerance (in plants), due to Na+ uptake into vacuoles.This model is specific for the eukaryotic members members of this family [Transport and binding proteins, Cations and iron carrying compounds]. Length = 559

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
KOG1965	575	consensus Sodium/hydrogen exchanger protein [Inorg	99.71
TIGR00840	559	b_cpa1 sodium/hydrogen exchanger 3. This model is	99.71
COG0025	429	NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorg	99.6
TIGR00831	525	a_cpa1 Na+/H+ antiporter, bacterial form. This mod	99.52
KOG1966	670	consensus Sodium/hydrogen exchanger protein [Inorg	99.38
TIGR00844	810	c_cpa1 na(+)/h(+) antiporter. This model is specif	99.12
PRK05326	562	potassium/proton antiporter; Reviewed	99.02
COG3263	574	NhaP-type Na+/H+ and K+/H+ antiporters with a uniq	99.0
TIGR00932	273	2a37 transporter, monovalent cation:proton antipor	98.13
PF00999	380	Na_H_Exchanger: Sodium/hydrogen exchanger family;	97.63
KOG4505	467	consensus Na+/H+ antiporter [Inorganic ion transpo	97.42
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.99
PRK10669	558	putative cation:proton antiport protein; Provision	96.65
PRK03562	621	glutathione-regulated potassium-efflux system prot	95.84
COG0475	397	KefB Kef-type K+ transport systems, membrane compo	91.44
PLN03159	832	cation/H(+) antiporter 15; Provisional	80.89

>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]

Probab=99.71  E-value=1.5e-17  Score=142.84  Aligned_cols=61  Identities=39%  Similarity=0.591  Sum_probs=56.1

Q ss_pred             hhHHHHHhHHHHHHHHHHHHHHHHHH------hccchHHHHHhhhhccCccHHHHHHHhhhCCCCCcc
Q 039050           49 LIVGALANISNTETNISYLGGVMFVM------YRLPFVECLMFGALISATDPITILYIFQGENVDNIE  110 (112)
Q Consensus        49 ~~i~~la~~g~v~iS~~~vg~~~~~~------~~l~l~~allfGAiiS~TDPVaVlaIf~~~~vp~~~  110 (112)
                      ..+..++++| ++||++++|..+|++      .+++|.+|++|||++|+||||+|++|||++++++++
T Consensus       127 ~si~~fa~~G-t~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIfnel~vd~~L  193 (575)
T KOG1965|consen  127 GSILLFAIFG-TFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIFNELGVDPKL  193 (575)
T ss_pred             HHHHHhhhcc-eeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHHHHHHHhCCCcce
Confidence            6677789999 999999999999987      389999999999999999999999999999998775

>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3

Probab=99.71  E-value=4.1e-17  Score=139.79  Aligned_cols=84  Identities=20%  Similarity=0.337  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhh-------hhHHHHHhHHHHHHHHHHHHHHHHHHh--------ccchHHHHHhhhhccC
Q 039050           27 VGILLQIMMLVLSFVLGHVLRR-------LIVGALANISNTETNISYLGGVMFVMY--------RLPFVECLMFGALISA   91 (112)
Q Consensus        27 ~~lfl~i~Lp~l~f~~~~~~~~-------~~i~~la~~g~v~iS~~~vg~~~~~~~--------~l~l~~allfGAiiS~   91 (112)
                      -++|+.++||+++|+.||.+++       ++++.+|++| +++|++++|..+|++.        +++|..|++|||++||
T Consensus        65 ~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~G-vlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSa  143 (559)
T TIGR00840        65 SSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVG-TLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISA  143 (559)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcC
Confidence            4789999999999999997765       8899999999 9999999999999753        5699999999999999


Q ss_pred             ccHHHHHHHhhhCCCCCccc
Q 039050           92 TDPITILYIFQGENVDNIEE  111 (112)
Q Consensus        92 TDPVaVlaIf~~~~vp~~~~  111 (112)
                      ||||+|++++|+.++|+++.
T Consensus       144 TDPVAVlai~~~~~v~~~L~  163 (559)
T TIGR00840       144 VDPVAVLAVFEEYHVNEKLY  163 (559)
T ss_pred             CchHHHHHHHHhcCCCcchh
Confidence            99999999999999999874

This model is specific for the eukaryotic members members of this family.

>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]

Probab=99.60  E-value=2.2e-15  Score=125.35  Aligned_cols=84  Identities=21%  Similarity=0.294  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhh-------hhHHHHHhHHHHHHHHHHHHHHHHHHh-ccchHHHHHhhhhccCccHHHHH
Q 039050           27 VGILLQIMMLVLSFVLGHVLRR-------LIVGALANISNTETNISYLGGVMFVMY-RLPFVECLMFGALISATDPITIL   98 (112)
Q Consensus        27 ~~lfl~i~Lp~l~f~~~~~~~~-------~~i~~la~~g~v~iS~~~vg~~~~~~~-~l~l~~allfGAiiS~TDPVaVl   98 (112)
                      -++++.+++|++.|+.|+..++       +++..+++.+ +++|++++|+..||+. ++||..|+++||++||||||++.
T Consensus        59 ~el~~~l~l~ilLf~~g~~l~~~~l~~~~~~I~~La~~~-v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~  137 (429)
T COG0025          59 PELFLVLFLAILLFAGGLELDLRELRRVWRSILVLALPL-VLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVS  137 (429)
T ss_pred             hHHHHHHHHHHHHHHhHhcCCHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhH
Confidence            3556699999999999987654       8888999999 9999999999999987 89999999999999999999999


Q ss_pred             HHhhhCCCCCccc
Q 039050           99 YIFQGENVDNIEE  111 (112)
Q Consensus        99 aIf~~~~vp~~~~  111 (112)
                      +++|+.++|||++
T Consensus       138 ~i~~~~~vp~ri~  150 (429)
T COG0025         138 PIFKRVRVPKRIR  150 (429)
T ss_pred             HHHhcCCCCHHHH
Confidence            9999999999975

>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form

Probab=99.52  E-value=4.3e-14  Score=119.92  Aligned_cols=82  Identities=18%  Similarity=0.229  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhh-------hhHHHHHhHHHHHHHHHHHHHHHHHHhccchHHHHHhhhhccCccHHHHHHH
Q 039050           28 GILLQIMMLVLSFVLGHVLRR-------LIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALISATDPITILYI  100 (112)
Q Consensus        28 ~lfl~i~Lp~l~f~~~~~~~~-------~~i~~la~~g~v~iS~~~vg~~~~~~~~l~l~~allfGAiiS~TDPVaVlaI  100 (112)
                      ++++.+++|++.|..|+.++.       +++..++++| +++++..+|..+||+.++||..|+++||++|||||+++.++
T Consensus        49 ~~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~~-vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav~~i  127 (525)
T TIGR00831        49 EIVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLL-VVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAVLGT  127 (525)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHHHHH
Confidence            356789999999999976554       6888899999 99999999999999889999999999999999999999999


Q ss_pred             hhhCCCCCcc
Q 039050          101 FQGENVDNIE  110 (112)
Q Consensus       101 f~~~~vp~~~  110 (112)
                      +|+.++|+++
T Consensus       128 l~~~~~p~rl  137 (525)
T TIGR00831       128 FKSIRAPKKL  137 (525)
T ss_pred             HhcCCCCHHH
Confidence            9999999875

This model is specific for the bacterial members of this family.

>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]

Probab=99.38  E-value=3.9e-13  Score=116.53  Aligned_cols=83  Identities=20%  Similarity=0.399  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhh-------hhHHHHHhHHHHHHHHHHHHHHHHHHh-----c--cchHHHHHhhhhccCc
Q 039050           27 VGILLQIMMLVLSFVLGHVLRR-------LIVGALANISNTETNISYLGGVMFVMY-----R--LPFVECLMFGALISAT   92 (112)
Q Consensus        27 ~~lfl~i~Lp~l~f~~~~~~~~-------~~i~~la~~g~v~iS~~~vg~~~~~~~-----~--l~l~~allfGAiiS~T   92 (112)
                      -..||+.+|||+.+.+||.+++       ..|+++|++| ++..++.+|..+|.+.     +  .++.+-++||+++|+.
T Consensus        98 s~vFFlyLLPPIvlDAGYfMp~r~Ff~NlgtILlfAVvG-Ti~Na~~~g~sL~~i~~~glf~~~~glld~LlFgSLIsAV  176 (670)
T KOG1966|consen   98 SDVFFLYLLPPIVLDAGYFMPNRAFFENLGTILLFAVVG-TIWNAFTIGASLYAISLSGLFGMSIGLLDILLFGSLISAV  176 (670)
T ss_pred             ccchhhhhcCHHHhcccccCccHHHHhccchhhhHHHHH-HHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhc
Confidence            3578899999999999999987       7899999999 9999999999988763     5  6699999999999999


Q ss_pred             cHHHHHHHhhhCCCCCcc
Q 039050           93 DPITILYIFQGENVDNIE  110 (112)
Q Consensus        93 DPVaVlaIf~~~~vp~~~  110 (112)
                      |||||+++|+|+++++.+
T Consensus       177 DPVAVLaVFEEihVNe~L  194 (670)
T KOG1966|consen  177 DPVAVLAVFEEIHVNEVL  194 (670)
T ss_pred             CchhhhhhhhhhccccEE
Confidence            999999999999999865

>TIGR00844 c_cpa1 na(+)/h(+) antiporter

Probab=99.12  E-value=3.2e-10  Score=101.19  Aligned_cols=86  Identities=19%  Similarity=0.263  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHhHHHHHHHHHHHHHHHHHH-hccchHHHHHhhhhccCccHHHHHHHhh
Q 039050           25 AGVGILLQIMMLVLSFVLGHVLRR-LIVGALANISNTETNISYLGGVMFVM-YRLPFVECLMFGALISATDPITILYIFQ  102 (112)
Q Consensus        25 ~~~~lfl~i~Lp~l~f~~~~~~~~-~~i~~la~~g~v~iS~~~vg~~~~~~-~~l~l~~allfGAiiS~TDPVaVlaIf~  102 (112)
                      +++.+.+.+|--.+-+..++..++ ..+..+++++ +.++.+++++++||+ .+++|..|+++||+++|||||.+.+++|
T Consensus        75 teIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~-M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPVLAssV~k  153 (810)
T TIGR00844        75 SRILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPV-MTSGWLVIALFVWILVPGLNFPASLLMGACITATDPVLAQSVVS  153 (810)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHHHHHHHHh
Confidence            333343333433333334444444 4456677788 999999999999988 5999999999999999999999999999


Q ss_pred             ---hCCCCCccc
Q 039050          103 ---GENVDNIEE  111 (112)
Q Consensus       103 ---~~~vp~~~~  111 (112)
                         +.++|++++
T Consensus       154 g~~~~rvP~rLR  165 (810)
T TIGR00844       154 GTFAQKVPGHLR  165 (810)
T ss_pred             ccccccCChHHH
Confidence               667888764

This model is specific for the fungal members of this family.

>PRK05326 potassium/proton antiporter; Reviewed

Probab=99.02  E-value=1.1e-09  Score=93.27  Aligned_cols=83  Identities=18%  Similarity=0.260  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhh-------hhHHHHHhHHHHHHHHHHHHHHHHHHhccchHHHHHhhhhccCccHHHHHH
Q 039050           27 VGILLQIMMLVLSFVLGHVLRR-------LIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALISATDPITILY   99 (112)
Q Consensus        27 ~~lfl~i~Lp~l~f~~~~~~~~-------~~i~~la~~g~v~iS~~~vg~~~~~~~~l~l~~allfGAiiS~TDPVaVla   99 (112)
                      ...+-.+.++.+.|..|+.++.       +++..++++| +++++..+|...+++++++|..|+++||++|+|||++|.+
T Consensus        59 ~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~la~~g-v~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a~v~~  137 (562)
T PRK05326         59 AYLVGNLALAVILFDGGLRTRWSSFRPALGPALSLATLG-VLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAAAVFS  137 (562)
T ss_pred             HHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchHHHHH
Confidence            3556678888899998865543       7778889999 9999999999999999999999999999999999999999


Q ss_pred             HhhhCC--CCCcc
Q 039050          100 IFQGEN--VDNIE  110 (112)
Q Consensus       100 If~~~~--vp~~~  110 (112)
                      ++|+.|  +++++
T Consensus       138 iL~~~~l~l~~~v  150 (562)
T PRK05326        138 LLRGKGLNLKERV  150 (562)
T ss_pred             HHhccCCCcchhH
Confidence            999999  77764

>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]

Probab=99.00  E-value=6.6e-10  Score=94.57  Aligned_cols=77  Identities=18%  Similarity=0.288  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHhhhhhh-------hhHHHHHhHHHHHHHHHHHHHHHHHHhccchHHHHHhhhhccCccHHHHHHHhhhCC
Q 039050           33 IMMLVLSFVLGHVLRR-------LIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALISATDPITILYIFQGEN  105 (112)
Q Consensus        33 i~Lp~l~f~~~~~~~~-------~~i~~la~~g~v~iS~~~vg~~~~~~~~l~l~~allfGAiiS~TDPVaVlaIf~~~~  105 (112)
                      +.|-.++|.-|+..+-       ++.+.+|++| |++|+..+|...+|+++++|.+++++||++.+||+.||++++++.+
T Consensus        66 lALaiILfdgG~~T~lss~r~a~~palsLATlG-Vl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAAVF~lL~~~n  144 (574)
T COG3263          66 LALAIILFDGGFGTQLSSFRVAAGPALSLATLG-VLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAAVFSLLGGKN  144 (574)
T ss_pred             HHHHHHhhcCccCCcHHHHHHHhhhhHHHHHHH-HHHHHHHHHHHHHHHhccHHHHHHHHHHhhccccHHHHHHHHccCC
Confidence            3445555665543332       8889999999 9999999999999999999999999999999999999999999999


Q ss_pred             CCCcc
Q 039050          106 VDNIE  110 (112)
Q Consensus       106 vp~~~  110 (112)
                      +++|.
T Consensus       145 l~erv  149 (574)
T COG3263         145 LNERV  149 (574)
T ss_pred             hhhhh
Confidence            88874

>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family

Probab=98.13  E-value=1.8e-05  Score=61.21  Aligned_cols=80  Identities=11%  Similarity=0.192  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhh------h-hhHHHHHhHHHHHHHHHHHHHHHHHHhccchHHHHHhhhhccCccHHHHHHH
Q 039050           28 GILLQIMMLVLSFVLGHVLR------R-LIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALISATDPITILYI  100 (112)
Q Consensus        28 ~lfl~i~Lp~l~f~~~~~~~------~-~~i~~la~~g~v~iS~~~vg~~~~~~~~l~l~~allfGAiiS~TDPVaVlaI  100 (112)
                      +.+-.+.+..+.|..|+..+      . +.....+..+ +.++.+.+|...+++.++++..|+++|+++++||+..+..+
T Consensus        44 ~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~~v~~~i  122 (273)
T TIGR00932        44 NHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQ-VLVPGVLLGLLLGHLLGLALGAAVVIGIILALSSTAVVVQV  122 (273)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHHHHHHHH
Confidence            33444555555666664332      2 4556667777 77876777887778889999999999999999999999999


Q ss_pred             hhhCCCCC
Q 039050          101 FQGENVDN  108 (112)
Q Consensus       101 f~~~~vp~  108 (112)
                      +++.|..+
T Consensus       123 l~~~~~~~  130 (273)
T TIGR00932       123 LKERGLLK  130 (273)
T ss_pred             HHHcCccc
Confidence            99998643

>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]

Probab=97.63  E-value=1.5e-05  Score=63.67  Aligned_cols=85  Identities=21%  Similarity=0.233  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhh-------hhHHHHHhHHHHHHHHHHHHHHHHH---HhccchHHHHHhhhhccCccH
Q 039050           25 AGVGILLQIMMLVLSFVLGHVLRR-------LIVGALANISNTETNISYLGGVMFV---MYRLPFVECLMFGALISATDP   94 (112)
Q Consensus        25 ~~~~lfl~i~Lp~l~f~~~~~~~~-------~~i~~la~~g~v~iS~~~vg~~~~~---~~~l~l~~allfGAiiS~TDP   94 (112)
                      ...+.+..+.++.+.|..|+.++.       +....++..+ +.++...++...++   ..|+++.+++++|+++++|||
T Consensus        46 ~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts~  124 (380)
T PF00999_consen   46 PSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALALGLVG-FLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATSP  124 (380)
T ss_dssp             --S-SSHHHHS--SSHHHHTTGGGG--------------------------------------------TTHHHHTT--H
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccce-eeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhcccc
Confidence            455667788888888888865543       5566667777 77776666777775   579999999999999999999


Q ss_pred             HHHHHHhh-hCCCCCcc
Q 039050           95 ITILYIFQ-GENVDNIE  110 (112)
Q Consensus        95 VaVlaIf~-~~~vp~~~  110 (112)
                      +.+..+++ +.+.|+++
T Consensus       125 ~~v~~~l~~~~~~~~~~  141 (380)
T PF00999_consen  125 AIVSPVLKELGLLPSRL  141 (380)
T ss_dssp             HHHHHHH-HHHT-SSTT
T ss_pred             cchhhhhhhhhcccccc
Confidence            99999994 45556654

These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.

>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]

Probab=97.42  E-value=0.00073  Score=56.77  Aligned_cols=91  Identities=19%  Similarity=0.205  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHh-ccchHHHHHhhhhccCccHHHHHH
Q 039050           21 EQQAAGVGILLQIMMLVLSFVLGHVLRRLIVGALANISNTETNISYLGGVMFVMY-RLPFVECLMFGALISATDPITILY   99 (112)
Q Consensus        21 ~~~~~~~~lfl~i~Lp~l~f~~~~~~~~~~i~~la~~g~v~iS~~~vg~~~~~~~-~l~l~~allfGAiiS~TDPVaVla   99 (112)
                      -.+.+++-+.+.+|--+.-...+|.+++|.......+..+.+-..+.+..+|.+. ++++..+++++|-+.||||+-..+
T Consensus        71 t~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si~vlllpVmi~gwlvs~~fvy~l~p~lnf~~Sl~iaaCiTaTDPiLsss  150 (467)
T KOG4505|consen   71 TYEISRVVLCVQVFAVAMELPRAYMLEHWRSIFVLLLPVMIIGWLVSFGFVYALIPNLNFLTSLLIAACITATDPILSSS  150 (467)
T ss_pred             hhhhhhhhHhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHccCCchhHHHH
Confidence            3456788899999999999999999999665443332325666777888888877 999999999999999999999999


Q ss_pred             Hhhh----CCCCCccc
Q 039050          100 IFQG----ENVDNIEE  111 (112)
Q Consensus       100 If~~----~~vp~~~~  111 (112)
                      |-.+    .++|+++|
T Consensus       151 IV~~g~~akrvPeriR  166 (467)
T KOG4505|consen  151 IVGGGKFAKRVPERIR  166 (467)
T ss_pred             HhcCchHhhhChHHHH
Confidence            9874    34666654

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.99  E-value=0.0043  Score=53.90  Aligned_cols=91  Identities=8%  Similarity=0.192  Sum_probs=67.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhHHHHHhHHHHHHHHHHHHHHHHHHhccchHHHHHhhhhccCccHH
Q 039050           17 SPAKEQQAAGVGILLQIMMLVLSFVLGHVLR-RLIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALISATDPI   95 (112)
Q Consensus        17 ~~~~~~~~~~~~lfl~i~Lp~l~f~~~~~~~-~~~i~~la~~g~v~iS~~~vg~~~~~~~~l~l~~allfGAiiS~TDPV   95 (112)
                      +.++.++.+++.+.+++|+-.+-+......+ +..+..++..+ +.++..+.+...++ .|++|..++++|..++.|+++
T Consensus        52 ~~~~i~~laelGvv~LLF~iGLel~~~~l~~~~~~~~~~g~~~-v~~t~~~~~~~~~~-~g~~~~~a~~~g~~la~SSTa  129 (601)
T PRK03659         52 DVDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFGVGAAQ-VLLSAAVLAGLLML-TDFSWQAAVVGGIGLAMSSTA  129 (601)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHH
Confidence            3456777778887777777766555554333 24555666677 77777666665554 699999999999999999999


Q ss_pred             HHHHHhhhCCCCCc
Q 039050           96 TILYIFQGENVDNI  109 (112)
Q Consensus        96 aVlaIf~~~~vp~~  109 (112)
                      -+..++++.|..+.
T Consensus       130 iv~~iL~e~~~~~t  143 (601)
T PRK03659        130 MALQLMREKGMNRS  143 (601)
T ss_pred             HHHHHHHHcccccC
Confidence            99999999987654

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.65  E-value=0.012  Score=50.30  Aligned_cols=88  Identities=15%  Similarity=0.280  Sum_probs=59.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHhccchHHHHHhhhhccCccHHHHH
Q 039050           19 AKEQQAAGVGILLQIMMLVLSFVLGHVLRRLIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALISATDPITIL   98 (112)
Q Consensus        19 ~~~~~~~~~~lfl~i~Lp~l~f~~~~~~~~~~i~~la~~g~v~iS~~~vg~~~~~~~~l~l~~allfGAiiS~TDPVaVl   98 (112)
                      +..+..+++.+.++.|+-.+-+...+..+.+.......+..+++ +..++..+++.+++++..++.+|+++|.|.+..+.
T Consensus        55 ~~~~~la~lGli~llF~~Gle~d~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~~vv~  133 (558)
T PRK10669         55 KLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAIAQIAV-ATLLGMALSAVLGWSLMTGIVFGLCLSTASTVVLL  133 (558)
T ss_pred             HHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence            44566667777776666666555544433333333222221333 44566666777899999999999999999999999


Q ss_pred             HHhhhCCCC
Q 039050           99 YIFQGENVD  107 (112)
Q Consensus        99 aIf~~~~vp  107 (112)
                      .++++.|.-
T Consensus       134 ~~L~e~~~l  142 (558)
T PRK10669        134 RALEERQLI  142 (558)
T ss_pred             HHHHhcCcc
Confidence            999998853

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=95.84  E-value=0.055  Score=47.39  Aligned_cols=90  Identities=11%  Similarity=0.143  Sum_probs=62.7

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHhHHHHHHHHHHHHHHHHHHhccchHHHHHhhhhccCccH
Q 039050           16 GSPAKEQQAAGVGILLQIMMLVLSFVLGHVLRR-LIVGALANISNTETNISYLGGVMFVMYRLPFVECLMFGALISATDP   94 (112)
Q Consensus        16 ~~~~~~~~~~~~~lfl~i~Lp~l~f~~~~~~~~-~~i~~la~~g~v~iS~~~vg~~~~~~~~l~l~~allfGAiiS~TDP   94 (112)
                      .+.++.++.+++.+.+++|+-.+-+......+. ..+..++... +.++....+ .+.+++|++|..++++|.+++.|.+
T Consensus        51 ~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~~~~~~~~g~~q-v~~~~~~~~-~~~~~~g~~~~~al~ig~~la~SSt  128 (621)
T PRK03562         51 TDVESILHFAEFGVVLMLFVIGLELDPQRLWKLRRSIFGGGALQ-MVACGGLLG-LFCMLLGLRWQVALLIGLGLALSST  128 (621)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            345567777788887777777665555543332 3344455555 566555444 3445579999999999999999999


Q ss_pred             HHHHHHhhhCCCC
Q 039050           95 ITILYIFQGENVD  107 (112)
Q Consensus        95 VaVlaIf~~~~vp  107 (112)
                      .-++.++++.+.-
T Consensus       129 aiv~~~L~e~~~l  141 (621)
T PRK03562        129 AIAMQAMNERNLM  141 (621)
T ss_pred             HHHHHHHHHhccc
Confidence            9899999988753

>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]

Probab=91.44  E-value=1.3  Score=36.75  Aligned_cols=89  Identities=16%  Similarity=0.265  Sum_probs=57.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hh-HHHHHhHHHHHHHHHHHHHHHHH-HhccchHHHHHhhhhccCccH
Q 039050           18 PAKEQQAAGVGILLQIMMLVLSFVLGHVLRR-LI-VGALANISNTETNISYLGGVMFV-MYRLPFVECLMFGALISATDP   94 (112)
Q Consensus        18 ~~~~~~~~~~~lfl~i~Lp~l~f~~~~~~~~-~~-i~~la~~g~v~iS~~~vg~~~~~-~~~l~l~~allfGAiiS~TDP   94 (112)
                      .+..+..++..+.++.|+-.+=+...+..|. +. ....+..+ +.. ....+...+. ..++++..++..|++++.|..
T Consensus        55 ~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~~~~~~~~~~~~-~~~-~~~l~~~~~~~~~g~~~~~al~lg~~l~~sS~  132 (397)
T COG0475          55 SEIIELLAELGVVFLLFLIGLEFDLERLKKVGRSVGLGVAQVG-LTA-PFLLGLLLLLGILGLSLIAALFLGAALALSST  132 (397)
T ss_pred             hHHHHHHHHHhHHHHHHHHHHCcCHHHHHHhchhhhhhHHHHH-HHH-HHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence            3444447888888777776665555554443 22 22223333 222 2233332222 479999999999999999999


Q ss_pred             HHHHHHhhhCCCCC
Q 039050           95 ITILYIFQGENVDN  108 (112)
Q Consensus        95 VaVlaIf~~~~vp~  108 (112)
                      .-+..+++|.|.-+
T Consensus       133 ~i~~~iL~e~~~~~  146 (397)
T COG0475         133 AIVLKILMELGLLK  146 (397)
T ss_pred             HHHHHHHHHhcccc
Confidence            99999999977654

>PLN03159 cation/H(+) antiporter 15; Provisional

Probab=80.89  E-value=11  Score=34.37  Aligned_cols=87  Identities=15%  Similarity=0.131  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhHHHHHhHHHHHHHHHHHHHHHHHHhcc------chHHHHHhhhhccCc
Q 039050           20 KEQQAAGVGILLQIMMLVLSFVLGHVLRR-LIVGALANISNTETNISYLGGVMFVMYRL------PFVECLMFGALISAT   92 (112)
Q Consensus        20 ~~~~~~~~~lfl~i~Lp~l~f~~~~~~~~-~~i~~la~~g~v~iS~~~vg~~~~~~~~l------~l~~allfGAiiS~T   92 (112)
                      ..+..+.+.+.++.|+-.+=+......|. ......+..+ +.+. +++|....++++.      ....++.+|..+|.|
T Consensus       103 ~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~-~ilp-f~lg~~~~~~l~~~~~~~~~~~~~l~~g~alS~T  180 (832)
T PLN03159        103 VLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAG-MALP-FCIGLAFSFIFHQVSRNVHQGTFILFLGVALSVT  180 (832)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHH-HHHH-HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHh
Confidence            45666777777777777766666655544 3344444444 4333 3334333332221      123467899999999


Q ss_pred             cHHHHHHHhhhCCCCC
Q 039050           93 DPITILYIFQGENVDN  108 (112)
Q Consensus        93 DPVaVlaIf~~~~vp~  108 (112)
                      ...-+..+++++|.-+
T Consensus       181 s~pVv~riL~Elkll~  196 (832)
T PLN03159        181 AFPVLARILAEIKLIN  196 (832)
T ss_pred             hHHHHHHHHHHcCccc
Confidence            8777889999988643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	112
2l0e_A	33	Sodium/hydrogen exchanger 1; transmembrane helix,	6e-04

>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens} Length = 33

 Score = 33.9 bits (77), Expect = 6e-04
 Identities = 10/27 (37%), Positives = 19/27 (70%)

Query: 81  ECLMFGALISATDPITILYIFQGENVD 107
           + L+FG++ISA DP+ +L +F+  +  
Sbjct: 5   DNLLFGSIISAVDPVAVLAVFEEIHKK 31

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
2l0e_A	33	Sodium/hydrogen exchanger 1; transmembrane helix,	99.36
1y4e_A	27	Sodium/hydrogen exchanger 1; NHE1 isoform, transme	92.98

>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}

Probab=99.36  E-value=4.6e-14  Score=79.57  Aligned_cols=32  Identities=31%  Similarity=0.594  Sum_probs=29.5

Q ss_pred             chHHHHHhhhhccCccHHHHHHHhhhCCCCCc
Q 039050           78 PFVECLMFGALISATDPITILYIFQGENVDNI  109 (112)
Q Consensus        78 ~l~~allfGAiiS~TDPVaVlaIf~~~~vp~~  109 (112)
                      +|.+|++|||++||||||+|++|||++++|+.
T Consensus         2 ~~~~~llfGAiis~TDpVavlaif~~~~vp~~   33 (33)
T 2l0e_A            2 KKKDNLLFGSIISAVDPVAVLAVFEEIHKKKX   33 (33)
T ss_dssp             CCCCCCTTHHHHTTCCHHHHHHHHHHHTTTC-
T ss_pred             cHHHHHHHHHHccCCChHHHHHHHHHcCCCCC
Confidence            57789999999999999999999999999973

>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens}

Probab=92.98  E-value=0.0052  Score=32.73  Aligned_cols=21  Identities=10%  Similarity=0.199  Sum_probs=18.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhh
Q 039050           28 GILLQIMMLVLSFVLGHVLRR   48 (112)
Q Consensus        28 ~lfl~i~Lp~l~f~~~~~~~~   48 (112)
                      ++|++.+||+++|++||.+++
T Consensus         5 ~~FF~~LLPPII~~aGy~l~~   25 (27)
T 1y4e_A            5 DVFFLFLLPPIILDAGYFLPL   25 (27)
T ss_dssp             CSSHHHHSCCSSHHHHTTGGG
T ss_pred             ceeeeeccCccEeeccccccC
Confidence            368899999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00