Citrus Sinensis ID: 039077

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MKIASEQMASVAHVMPSATSCCTVRKQGPHQRPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVLFLFASSCTLNAYVVLLETTCLI
Secondary Structure (PSIPRED)
ccHHHHcccccEEEccccccccEEEEcccccccccccccccccccccccccccccEEcccccccccccccccccEEEEEEEccccccccHHHHHHHHHHHccccccccccccccHHHHHHHccccEEEEEccccHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHcccccccccccccccccccccEEEccccccccccccccccccccccEEcccccccccEEEEEEEEccccccccHHHHHHHHHHcccccccccccccccHHHHHHcccHHHEEEEHHHHHHHHEEEEEHccccc
Coil and Loop (DISEMBL)
MKIASEQMASVahvmpsatscctvrkqgphqrptgsqkigcfsspglcqlkWESLLVKgvkhkrcsipsrgtrFIQAvavpvappsedsaDCRKQIAESygfrqigeplpenvtmkdvidsLPKKVLFLFASSCTLNAYVVLLETTCLI
Flexible Loop (DISEMBL)
MKIASEQMASVAHVMPSATSCCTVRKQGPHQRPTGSQKIGCFSSPGLCQLKWESLLVKGVKHkrcsipsrgtrfiQAVAVpvappsedsADCRKQIAESYgfrqigeplpeNVTMKDVIDSLPKKVLFLFASSCTLNAYVVLLETTCLI
Low Complexity Region (SEG)
MKIASEQMASVAHVMPSATSCCTVRKQGPHQRPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVLFLFASSCTLNAYVVLLETTCLI
Disordered region (IsUnstruct)
**************************************IGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPV*************IAESYGFRQIGEPLPENVTMKDVIDSLPKKVLFLFASSCTLNAYVVLLETTCL*
Disordered Region (DISOPRED)
*************VMPSATSCCT***********************LCQLKWESLL*********SIPSRGTRFIQAVAV******************SYGFRQIGEPLPENVTMKDVIDSLPKKVLFLFASSCTLNAYVVLLETTCLI
Disordered Region (DISEMBL)
**************MPSATSCC**************QKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPV********DCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVLFLFASSCTLNAYVVLLETTCLI
Disordered Region (DISPRO)
*******************************RPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVLFLFASSCTLNAYVVLLETTCLI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKIASEQMASVAHVMPSATSCCTVRKQGPHQRPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVLFLFASSCTLNAYVVLLETTCLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	149	2.2.26 [Sep-21-2011]
P46312	448	Omega-6 fatty acid desatu	yes	no	0.671	0.223	0.537	4e-21
P48628	424	Omega-6 fatty acid desatu	no	no	0.677	0.238	0.435	2e-18
P48627	443	Omega-6 fatty acid desatu	N/A	no	0.563	0.189	0.5	4e-17
P48629	447	Omega-6 fatty acid desatu	N/A	no	0.570	0.190	0.473	7e-17

>sp|P46312|FAD6C_ARATH Omega-6 fatty acid desaturase, chloroplastic OS=Arabidopsis thaliana GN=FAD6 PE=1 SV=2

 Score =  100 bits (248), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 57/106 (53%), Positives = 71/106 (66%), Gaps = 6/106 (5%)

Query: 28  GPHQRPTGSQKIGCFS---SPGLCQLKWESLLVKGVKHK--RCSIP-SRGTRFIQAVAVP 81
           GP Q      K+   S   SPG+  +K   LL+KG  H+  RC  P  R    I+AVA P
Sbjct: 14  GPQQCLPRVPKLAASSARVSPGVYAVKPIDLLLKGRTHRSRRCVAPVKRRIGCIKAVAAP 73

Query: 82  VAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
           VAPPS DSA+ R+Q+AESYGFRQIGE LPENVT+KD++D+LPK+V 
Sbjct: 74  VAPPSADSAEDREQLAESYGFRQIGEDLPENVTLKDIMDTLPKEVF 119

Chloroplast omega-6 fatty acid desaturase introduces the second double bond in the biosynthesis of 16:3 and 18:3 fatty acids, important constituents of plant membranes. It is thought to use ferredoxin as an electron donor and to act on fatty acids esterified to galactolipids, sulfolipids and phosphatidylglycerol.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 9EC: .EC: -

>sp|P48628|FAD6C_SOYBN Omega-6 fatty acid desaturase, chloroplastic OS=Glycine max PE=2 SV=1

 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/101 (43%), Positives = 63/101 (62%)

Query: 27  QGPHQRPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPS 86
           +G +Q+P   + I    SPG+  L    L+ K  + +R  +       I AVA+PV P  
Sbjct: 13  KGSYQKPVLRRDIAARYSPGIFSLNSNGLIQKRFRRQRNFVTRNKVTVIHAVAIPVQPAP 72

Query: 87  EDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
            +SA+ RKQ+AE YGFRQ+GEPL ++VT+KDVI+ LPK+V 
Sbjct: 73  VESAEYRKQLAEDYGFRQVGEPLSDDVTLKDVINPLPKEVF 113

Chloroplast omega-6 fatty acid desaturase introduces the second double bond in the biosynthesis of 16:3 and 18:3 fatty acids, important constituents of plant membranes. It is thought to use ferredoxin as an electron donor and to act on fatty acids esterified to galactolipids, sulfolipids and phosphatidylglycerol.

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: -

>sp|P48627|FAD6C_BRANA Omega-6 fatty acid desaturase, chloroplastic OS=Brassica napus PE=2 SV=1

 Score = 87.0 bits (214), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 42/84 (50%), Positives = 61/84 (72%)

Query: 44  SPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSEDSADCRKQIAESYGFR 103
           SPG+  ++   LL+KG +        +    I+AV VPVAPPS D+A+ R+Q+AESYGF+
Sbjct: 31  SPGVYAVRPIDLLLKGTRRTFLVPAKKRIGCIKAVFVPVAPPSADNAEDREQLAESYGFK 90

Query: 104 QIGEPLPENVTMKDVIDSLPKKVL 127
           QIG+ LP+NVT+KD++D+LPK+V 
Sbjct: 91  QIGQDLPDNVTLKDIMDTLPKEVF 114

Chloroplast omega-6 fatty acid desaturase introduces the second double bond in the biosynthesis of 16:3 and 18:3 fatty acids, important constituents of plant membranes. It is thought to use ferredoxin as an electron donor and to act on fatty acids esterified to galactolipids, sulfolipids and phosphatidylglycerol.

Brassica napus (taxid: 3708)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: -

>sp|P48629|FAD6C_SPIOL Omega-6 fatty acid desaturase, chloroplastic OS=Spinacia oleracea GN=FAD6 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/93 (47%), Positives = 63/93 (67%), Gaps = 8/93 (8%)

Query: 43  SSPGLCQLKWESLLVKGVKHKRCSIPSRGTR----FIQAVAVPVAPPS----EDSADCRK 94
           +S G+  +KW+   ++ + H R +   +GTR     +QAVAVPVA PS     D+ +  K
Sbjct: 27  NSAGISCIKWQRPCLRNLGHVRLNQQRKGTRRKSTLVQAVAVPVAQPSAFPPTDNTEHLK 86

Query: 95  QIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
           Q+AE YGF+QIGEPLP++VTM+D+I SLPK+V 
Sbjct: 87  QLAERYGFQQIGEPLPDDVTMRDIITSLPKQVF 119

Chloroplast omega-6 fatty acid desaturase introduces the second double bond in the biosynthesis of 16:3 and 18:3 fatty acids, important constituents of plant membranes. It is thought to use ferredoxin as an electron donor and to act on fatty acids esterified to galactolipids, sulfolipids and phosphatidylglycerol.

Spinacia oleracea (taxid: 3562)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
359494889	441	PREDICTED: omega-6 fatty acid desaturase	0.671	0.226	0.6	3e-28
118487416	444	unknown [Populus trichocarpa]	0.664	0.222	0.621	3e-28
255584459	440	Omega-6 fatty acid desaturase, chloropla	0.671	0.227	0.572	3e-24
268527769	442	chloroplast omega-6 fatty acid desaturas	0.677	0.228	0.539	3e-22
449457899	443	PREDICTED: omega-6 fatty acid desaturase	0.677	0.227	0.504	1e-21
449526521	390	PREDICTED: LOW QUALITY PROTEIN: omega-6	0.677	0.258	0.504	1e-21
156900672	440	chloroplast omega-6 fatty acid desaturas	0.664	0.225	0.52	7e-21
15235766	448	omega-6 fatty acid desaturase [Arabidops	0.671	0.223	0.537	3e-19
493068	418	chloroplast omega-6 fatty acid desaturas	0.563	0.200	0.597	8e-19
339779644	397	plastid oleate desaturase FAD6 [Carthamu	0.677	0.254	0.470	2e-18

>gi|359494889|ref|XP_003634863.1| PREDICTED: omega-6 fatty acid desaturase, chloroplastic-like [Vitis vinifera] gi|296090576|emb|CBI40939.3| unnamed protein product [Vitis vinifera]

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 60/100 (60%), Positives = 79/100 (79%)

Query: 28  GPHQRPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSE 87
           GPHQR   S ++G   SPG+  LK ES+L K +KH++CSI ++ ++ +QAVA+PVAP   
Sbjct: 14  GPHQRSIPSYRVGPHCSPGMLCLKLESILGKEIKHQKCSISTKRSKIVQAVAIPVAPSPI 73

Query: 88  DSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
           DSA+ RKQ+AESYGF QIGEPLPENVT++DVID++PKKV 
Sbjct: 74  DSAEYRKQLAESYGFEQIGEPLPENVTLRDVIDTIPKKVF 113

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487416|gb|ABK95536.1| unknown [Populus trichocarpa]

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 76/103 (73%), Gaps = 4/103 (3%)

Query: 28  GPHQRPTGSQKIGCFSSP---GLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAP 84
           GPHQR   SQKI   S+P   G   L W+ LLVKG  HK+  IP R TR +QAVA PVAP
Sbjct: 15  GPHQR-IRSQKIATHSAPCMTGNWHLTWDRLLVKGENHKKWVIPMRRTRTVQAVAAPVAP 73

Query: 85  PSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
            S DSA+ RKQ+AESYGFR+IGEPLP+N+T+K V+D+LPKKV 
Sbjct: 74  SSADSAEYRKQLAESYGFRKIGEPLPDNITLKGVMDTLPKKVF 116

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584459|ref|XP_002532960.1| Omega-6 fatty acid desaturase, chloroplast precursor, putative [Ricinus communis] gi|223527270|gb|EEF29426.1| Omega-6 fatty acid desaturase, chloroplast precursor, putative [Ricinus communis]

 Score =  116 bits (291), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 59/103 (57%), Positives = 71/103 (68%), Gaps = 3/103 (2%)

Query: 28  GPHQRPTGSQKI---GCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAP 84
           GP  +P  SQKI       +PG+  L W+ LL+KG K K C    + T+ IQAVA PVA 
Sbjct: 14  GPQLKPIRSQKIVTHNSLGTPGIHHLTWDRLLLKGEKQKSCLFYLKKTKPIQAVATPVAR 73

Query: 85  PSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
            S DSA+ RKQ+AESYGFRQIGEPLP NVT+K +ID+LPKKV 
Sbjct: 74  SSADSAEYRKQLAESYGFRQIGEPLPGNVTLKYIIDTLPKKVF 116

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|268527769|gb|ACZ06070.1| chloroplast omega-6 fatty acid desaturase [Arachis hypogaea]

 Score =  109 bits (273), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 73/102 (71%), Gaps = 1/102 (0%)

Query: 27  QGPHQRPTGSQK-IGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPP 85
           +G HQ+P  S++ I    SP +C LK   L+ KG +H+   +P +    IQAVAVP+ P 
Sbjct: 13  KGSHQKPLQSKRAIVAQYSPRVCNLKECGLIQKGFRHRLNFVPRKKVTVIQAVAVPLEPF 72

Query: 86  SEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
             +SA+ RKQ+AESYGFRQIGEPLP+++T+KDVIDSLPKKV 
Sbjct: 73  PVESAEYRKQLAESYGFRQIGEPLPDDITLKDVIDSLPKKVF 114

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449457899|ref|XP_004146685.1| PREDICTED: omega-6 fatty acid desaturase, chloroplastic-like [Cucumis sativus]

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 70/103 (67%), Gaps = 2/103 (1%)

Query: 27  QGPHQRPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPS 86
            GPH     +QKI    SPG+ Q+K E L  K +K +   +P +    ++A+AVP APPS
Sbjct: 13  NGPHHNFARTQKIASHCSPGILQVKGEILFQKKIKRQNYLLPVKRAAILRAIAVPAAPPS 72

Query: 87  E--DSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
              DSA+ RKQ++ESYGF QIGEPLP+NV +KDV++SLPK+V 
Sbjct: 73  SSADSAEYRKQLSESYGFEQIGEPLPDNVRLKDVVESLPKEVF 115

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449526521|ref|XP_004170262.1| PREDICTED: LOW QUALITY PROTEIN: omega-6 fatty acid desaturase, chloroplastic-like, partial [Cucumis sativus]

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 52/103 (50%), Positives = 70/103 (67%), Gaps = 2/103 (1%)

Query: 27  QGPHQRPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPS 86
            GPH     +QKI    SPG+ Q+K E L  K +K +   +P +    ++A+AVP APPS
Sbjct: 13  NGPHHNFARTQKIASHCSPGILQVKGEILFQKKIKRQNYLLPVKRAAILRAIAVPAAPPS 72

Query: 87  E--DSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
              DSA+ RKQ++ESYGF QIGEPLP+NV +KDV++SLPK+V 
Sbjct: 73  SSADSAEYRKQLSESYGFEQIGEPLPDNVRLKDVVESLPKEVF 115

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156900672|gb|ABU96742.1| chloroplast omega-6 fatty acid desaturase [Jatropha curcas]

 Score =  105 bits (261), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 52/100 (52%), Positives = 69/100 (69%), Gaps = 1/100 (1%)

Query: 28  GPHQRPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSE 87
            P  RP   +      SPG+ +L W+ L+ KG K K+  +  +  + +QAVA PVAP S 
Sbjct: 14  NPQPRPIRCRSTLTHCSPGIHRLTWDRLIKKGEKQKQFLLHVKRIKPVQAVAFPVAP-SS 72

Query: 88  DSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
           DSA  RKQ+AESYGFRQIGEPLPEN+T++++ID+LPKKV 
Sbjct: 73  DSAQYRKQLAESYGFRQIGEPLPENITLREIIDTLPKKVF 112

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235766|ref|NP_194824.1| omega-6 fatty acid desaturase [Arabidopsis thaliana] gi|13432148|sp|P46312.2|FAD6C_ARATH RecName: Full=Omega-6 fatty acid desaturase, chloroplastic; Flags: Precursor gi|2980771|emb|CAA18198.1| chloroplast omega-6 fatty acid desaturase (fad6) [Arabidopsis thaliana] gi|7269997|emb|CAB79813.1| chloroplast omega-6 fatty acid desaturase (fad6) [Arabidopsis thaliana] gi|15010640|gb|AAK73979.1| AT4g30950/F6I18_140 [Arabidopsis thaliana] gi|16604360|gb|AAL24186.1| AT4g30950/F6I18_140 [Arabidopsis thaliana] gi|16604468|gb|AAL24240.1| AT4g30950/F6I18_140 [Arabidopsis thaliana] gi|18958032|gb|AAL79589.1| AT4g30950/F6I18_140 [Arabidopsis thaliana] gi|21593581|gb|AAM65548.1| chloroplast omega-6 fatty acid desaturase (fad6) [Arabidopsis thaliana] gi|332660434|gb|AEE85834.1| omega-6 fatty acid desaturase [Arabidopsis thaliana]

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 57/106 (53%), Positives = 71/106 (66%), Gaps = 6/106 (5%)

Query: 28  GPHQRPTGSQKIGCFS---SPGLCQLKWESLLVKGVKHK--RCSIP-SRGTRFIQAVAVP 81
           GP Q      K+   S   SPG+  +K   LL+KG  H+  RC  P  R    I+AVA P
Sbjct: 14  GPQQCLPRVPKLAASSARVSPGVYAVKPIDLLLKGRTHRSRRCVAPVKRRIGCIKAVAAP 73

Query: 82  VAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
           VAPPS DSA+ R+Q+AESYGFRQIGE LPENVT+KD++D+LPK+V 
Sbjct: 74  VAPPSADSAEDREQLAESYGFRQIGEDLPENVTLKDIMDTLPKEVF 119

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|493068|gb|AAA92800.1| chloroplast omega-6 fatty acid desaturase [Arabidopsis thaliana]

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 65/87 (74%), Gaps = 3/87 (3%)

Query: 44  SPGLCQLKWESLLVKGVKHK--RCSIP-SRGTRFIQAVAVPVAPPSEDSADCRKQIAESY 100
           SPG+  +K   LL+KG  H+  RC  P  R    I+AVA PVAPPS DSA+ R+Q+AESY
Sbjct: 33  SPGVYAVKPIDLLLKGRTHRSRRCVAPVKRRIGCIKAVAAPVAPPSADSAEDREQLAESY 92

Query: 101 GFRQIGEPLPENVTMKDVIDSLPKKVL 127
           GFRQIGE LPENVT+KD++D+LPK+V 
Sbjct: 93  GFRQIGEDLPENVTLKDIMDTLPKEVF 119

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|339779644|gb|AEK06379.1| plastid oleate desaturase FAD6 [Carthamus tinctorius]

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/102 (47%), Positives = 65/102 (63%), Gaps = 1/102 (0%)

Query: 27  QGPHQRPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPV-APP 85
           +GP Q+P    + G     G   LKW+ L     KH+   +P R T+ +QAV   V AP 
Sbjct: 13  KGPQQKPLHGYRFGSLYPAGTSFLKWDILPKCRTKHQTYVVPLRRTKIVQAVTSSVTAPL 72

Query: 86  SEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVL 127
             DSA+ RK++ ESYGFRQIGEPLP+N+T+K++ID+LPK V 
Sbjct: 73  PSDSAEERKELCESYGFRQIGEPLPDNITLKNIIDTLPKTVF 114

Source: Carthamus tinctorius

Species: Carthamus tinctorius

Genus: Carthamus

Family: Asteraceae

Order: Asterales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
TAIR|locus:2126734	448	FAD6 "fatty acid desaturase 6"	0.664	0.220	0.542	2.8e-20

TAIR|locus:2126734 FAD6 "fatty acid desaturase 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 245 (91.3 bits), Expect = 2.8e-20, P = 2.8e-20
 Identities = 57/105 (54%), Positives = 71/105 (67%)

Query:    28 GPHQRPTGSQKIGCFS---SPGLCQLKWESLLVKGVKHK--RCSIP-SRGTRFIQAVAVP 81
             GP Q      K+   S   SPG+  +K   LL+KG  H+  RC  P  R    I+AVA P
Sbjct:    14 GPQQCLPRVPKLAASSARVSPGVYAVKPIDLLLKGRTHRSRRCVAPVKRRIGCIKAVAAP 73

Query:    82 VAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKV 126
             VAPPS DSA+ R+Q+AESYGFRQIGE LPENVT+KD++D+LPK+V
Sbjct:    74 VAPPSADSAEDREQLAESYGFRQIGEDLPENVTLKDIMDTLPKEV 118


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.132   0.402    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      149       149   0.00078  104 3  11 22  0.44    31
                                                     30  0.39    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  588 (63 KB)
  Total size of DFA:  145 KB (2088 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.97u 0.12s 15.09t   Elapsed:  00:00:00
  Total cpu time:  14.97u 0.12s 15.09t   Elapsed:  00:00:00
  Start:  Fri May 10 07:54:34 2013   End:  Fri May 10 07:54:34 2013

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;NAS;IDA

GO:0010205 "photoinhibition" evidence=IMP

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0006633 "fatty acid biosynthetic process" evidence=TAS

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045485 "omega-6 fatty acid desaturase activity" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00013334001 SubName- Full=Chromosome undetermined scaffold_462, whole genome shotgun sequence; (143 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	149
PLN02598	421	PLN02598, PLN02598, omega-6 fatty acid desaturase	1e-22

>gnl|CDD|215323 PLN02598, PLN02598, omega-6 fatty acid desaturase

 Score = 91.4 bits (227), Expect = 1e-22
 Identities = 46/112 (41%), Positives = 57/112 (50%), Gaps = 21/112 (18%)

Query: 15  MPSATSCCTVRKQGPHQRPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRF 74
           M S  +       G  +      K+  F           +   K           R    
Sbjct: 1   MASRIADAVFAFSGSQRALVRRAKLPAFLRLA-------AAARK-----------RRQGN 42

Query: 75  IQAVAVPVAPPSEDSADCRKQIAESYGFRQIGEPLPENVTMKDVIDSLPKKV 126
           IQAVAVPVAPPS   A+ RKQ+AESYGF QIGEPLP+NVT+KDV+ +LPK+V
Sbjct: 43  IQAVAVPVAPPS---AEERKQLAESYGFTQIGEPLPDNVTLKDVVKTLPKEV 91

Length = 421

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	149
PLN02598	421	omega-6 fatty acid desaturase	99.88
PLN02498	450	omega-3 fatty acid desaturase	95.95
PF11960	136	DUF3474: Domain of unknown function (DUF3474); Int	87.06
PLN02505	381	omega-6 fatty acid desaturase	86.92

>PLN02598 omega-6 fatty acid desaturase

Probab=99.88  E-value=1.2e-23  Score=183.11  Aligned_cols=97  Identities=44%  Similarity=0.617  Sum_probs=84.8

Q ss_pred             CCcceeeEeecCCCCCCCCcccccccCCCCceecchhhhhhhccccccccccCCCcceeeEEEeecCCCCCCCHHHHHHH
Q 039077           17 SATSCCTVRKQGPHQRPTGSQKIGCFSSPGLCQLKWESLLVKGVKHKRCSIPSRGTRFIQAVAVPVAPPSEDSADCRKQI   96 (149)
Q Consensus        17 ~~~~~~~~~f~gp~~~P~~~~r~aa~~spG~~~lk~~~li~Kg~~~~~~~~~~rr~~~vqAVavPVappp~Ds~e~R~ql   96 (149)
                      ++..-+++.|+||+++|..+.++......|+                  +.++|+.+.+|||++||++|+.   |||+||
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~   61 (421)
T PLN02598          3 SRIADAVFAFSGSQRALVRRAKLPAFLRLAA------------------AARKRRQGNIQAVAVPVAPPSA---EERKQL   61 (421)
T ss_pred             cccccchhccCCccccccccccchhhhhccc------------------cccccccccceeeeecCCCCCH---HHHHHH
Confidence            3444577999999999888877665555565                  7789999999999999998665   999999


Q ss_pred             HHhhCchhcCCCCCCcccHHHHhhhcCceeeEeeccee
Q 039077           97 AESYGFRQIGEPLPENVTMKDVIDSLPKKVLFLFASSC  134 (149)
Q Consensus        97 Ae~yGf~qIGe~LPd~VTLkdVi~sLPkeVFeidd~~~  134 (149)
                      ||+|||+|||||+|+++||+||.++||||+||.|+.+-
T Consensus        62 ~~~~~~~~~~~~~~~~~tl~~i~~aiP~~~F~~s~~rs   99 (421)
T PLN02598         62 AESYGFTQIGEPLPDNVTLKDVVKTLPKEVFEIDDFKA   99 (421)
T ss_pred             HHhhChhhcCCcCCCCcCHHHHHHhCCHHHcCCCHHHH
Confidence            99999999999999999999999999999999998764

>PLN02498 omega-3 fatty acid desaturase

Probab=95.95  E-value=0.0051  Score=55.77  Aligned_cols=57  Identities=16%  Similarity=0.243  Sum_probs=39.6

Q ss_pred             EEEeecCCCCCCCHHHHHHHHHhhCchhc---CCCCCCcccHHHHhhhcCceeeEeeccee
Q 039077           77 AVAVPVAPPSEDSADCRKQIAESYGFRQI---GEPLPENVTMKDVIDSLPKKVLFLFASSC  134 (149)
Q Consensus        77 AVavPVappp~Ds~e~R~qlAe~yGf~qI---Ge~LPd~VTLkdVi~sLPkeVFeidd~~~  134 (149)
                      .|++|+..+..+ +|++.+.+++.|+.+.   ...-|.+.||+||.+.+||++||-|..+-
T Consensus        64 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~tl~dir~aIP~hcF~~s~~rs  123 (450)
T PLN02498         64 NVSAPLTVPSGE-EEEDEEGVNGVGEDEEGEFDPGAPPPFNLADIRAAIPKHCWVKNPWRS  123 (450)
T ss_pred             eecccCcccCCC-cchhhhhhhhcccccccccCCCCCCCCCHHHHHHhCCHHHcCCChHHH
Confidence            467777643333 3445577777776542   22345788999999999999999997654

>PF11960 DUF3474: Domain of unknown function (DUF3474); InterPro: IPR021863 This presumed domain is functionally uncharacterised

Probab=87.06  E-value=0.47  Score=37.77  Aligned_cols=62  Identities=21%  Similarity=0.327  Sum_probs=41.4

Q ss_pred             CCCcceeeEEEeecCCCCCCCHHHH---HHHHHhhCchhcCCCCCCcccHHHHhhhcCceeeEeecce
Q 039077           69 SRGTRFIQAVAVPVAPPSEDSADCR---KQIAESYGFRQIGEPLPENVTMKDVIDSLPKKVLFLFASS  133 (149)
Q Consensus        69 ~rr~~~vqAVavPVappp~Ds~e~R---~qlAe~yGf~qIGe~LPd~VTLkdVi~sLPkeVFeidd~~  133 (149)
                      .+++.....|++|+..+..+.+|+.   ..-.++-+|. -|+  |...||+||=+-+||..|+=|..+
T Consensus        55 ~~~r~w~l~VsaP~~~~~~~~e~~~~~~~~~~~~~~fd-p~a--pPPFtL~dIraAIPkHCf~k~~~r  119 (136)
T PF11960_consen   55 FRRRNWALNVSAPLRVPSVEEEEEEVSSNKEEEEEEFD-PGA--PPPFTLADIRAAIPKHCFVKSPWR  119 (136)
T ss_pred             ccccCcceeeeccCcccccccchhhccccccccccccC-CCC--CCCcCHHHHHhhcChhhcCCChHH
Confidence            4445566778999988777766665   1222233343 233  346799999999999999977543

This domain is found in bacteria and eukaryotes. This domain is typically between 126 to 140 amino acids in length. This domain is found associated with PF00487 from PFAM. ; GO: 0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water, 0055114 oxidation-reduction process

>PLN02505 omega-6 fatty acid desaturase

Probab=86.92  E-value=0.21  Score=44.03  Aligned_cols=25  Identities=12%  Similarity=0.157  Sum_probs=22.3

Q ss_pred             CCcccHHHHhhhcCceeeEeeccee
Q 039077          110 PENVTMKDVIDSLPKKVLFLFASSC  134 (149)
Q Consensus       110 Pd~VTLkdVi~sLPkeVFeidd~~~  134 (149)
                      +.++||+||.+++||++||.|+.+.
T Consensus        28 ~p~~tl~~ir~aiP~~~f~~s~~rs   52 (381)
T PLN02505         28 KPPFTLGDIKKAIPPHCFKRSVLRS   52 (381)
T ss_pred             CCCccHHHHHHhCCHHhcCCCHHHH
Confidence            4678999999999999999998765

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00