Citrus Sinensis ID: 039203

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-----
Protein Sequence
MSYRREHRASKGALFDEYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVLYYLIR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHccccccccccccccccccHHHcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
msyrrehraskgalfdeydgleegglkasssyssgidehdndkaiDGLKERAVFLKRLTGDIHEEVESHNRLLDrmgnsmdasrgimsgTMDRFKMVFEKKSNRRICTLVGSFVVSFFVLYYLIR
Flexible Loop (DISEMBL)
msyrrehraskgalfdeydgleEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKrltgdiheeveshnrlldrmgnsmdasrgimSGTMDRFKMVFEKKSNrrictlvgsfvvSFFVLYYLIR
Low Complexity Region (SEG)
MSYRREHRASKGALFDEYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGsfvvsffvlyylIR
Disordered region (IsUnstruct)
***********************************************LKERAVFLKRLTGDIH***************************MDRFKMVFEKKSNRRICTLVGSFVVSFFVLYYLI*
Disordered Region (DISOPRED)
***************************************************AVFLKRLTGDIHEEVESHNRLLDRMGNS*******************EKKSNRRICTLVGSFVVSFFVLYYLIR
Disordered Region (DISEMBL)
**********KGALFDEYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVLYYLIR
Disordered Region (DISPRO)
*****************Y*GLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVLYYLIR
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSYRREHRASKGALFDEYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVLYYLIR
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	125	2.2.26 [Sep-21-2011]
Q94CG2	130	Bet1-like SNARE 1-2 OS=Ar	yes	no	0.984	0.946	0.648	7e-43
Q9M2J9	122	Bet1-like SNARE 1-1 OS=Ar	no	no	0.976	1.0	0.616	4e-40
Q62896	118	BET1 homolog OS=Rattus no	yes	no	0.856	0.906	0.284	5e-09
O35623	118	BET1 homolog OS=Mus muscu	yes	no	0.704	0.745	0.284	4e-08
O15155	118	BET1 homolog OS=Homo sapi	yes	no	0.768	0.813	0.265	6e-08
Q68EL3	110	BET1-like protein OS=Dani	no	no	0.696	0.790	0.337	4e-07
O35153	111	BET1-like protein OS=Mus	no	no	0.768	0.864	0.316	7e-07
Q3MHP8	111	BET1-like protein OS=Bos	no	no	0.712	0.801	0.318	7e-07
Q5RBX2	111	BET1-like protein OS=Pong	yes	no	0.712	0.801	0.307	1e-06
O35152	111	BET1-like protein OS=Ratt	no	no	0.704	0.792	0.311	1e-06

>sp|Q94CG2|BET12_ARATH Bet1-like SNARE 1-2 OS=Arabidopsis thaliana GN=BET12 PE=2 SV=4

 Score =  172 bits (435), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 81/125 (64%), Positives = 107/125 (85%), Gaps = 2/125 (1%)

Query: 1   MSYRREHRASKGALFDEYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTG 60
           M++RRE+RAS+ +LFD  DGLEEG L+ASSSY+   DE DND+A++ L++R  FLKR+TG
Sbjct: 1   MNFRRENRASRTSLFDGLDGLEEGRLRASSSYAH--DERDNDEALENLQDRVSFLKRVTG 58

Query: 61  DIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVL 120
           DIHEEVE+HNRLLD++GN MD++RGIMSGT++RFK+VFEKKSNR+ C L+  FV+ F ++
Sbjct: 59  DIHEEVENHNRLLDKVGNKMDSARGIMSGTINRFKLVFEKKSNRKSCKLIAYFVLLFLIM 118

Query: 121 YYLIR 125
           YYLIR
Sbjct: 119 YYLIR 123

Required for vesicular transport from the ER to the Golgi complex. Functions as a SNARE associated with ER-derived vesicles.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M2J9|BET11_ARATH Bet1-like SNARE 1-1 OS=Arabidopsis thaliana GN=BET11 PE=1 SV=1

 Score =  162 bits (411), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 77/125 (61%), Positives = 103/125 (82%), Gaps = 3/125 (2%)

Query: 1   MSYRREHRASKGALFDEYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTG 60
           M+ RRE R  + +LFD   G+EEGG++A+SSYS  I+EH+N++A++GL++R + LKRL+G
Sbjct: 1   MNPRREPRGGRSSLFD---GIEEGGIRAASSYSHEINEHENERALEGLQDRVILLKRLSG 57

Query: 61  DIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVL 120
           DI+EEV++HNR+LDRMGN MD+SRG +SGTMDRFK VFE KS+RR+ TLV SFV  F V+
Sbjct: 58  DINEEVDTHNRMLDRMGNDMDSSRGFLSGTMDRFKTVFETKSSRRMLTLVASFVGLFLVI 117

Query: 121 YYLIR 125
           YYL R
Sbjct: 118 YYLTR 122

Required for vesicular transport from the ER to the Golgi complex. Functions as a SNARE associated with ER-derived vesicles.

Arabidopsis thaliana (taxid: 3702)

>sp|Q62896|BET1_RAT BET1 homolog OS=Rattus norvegicus GN=Bet1 PE=1 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 59/109 (54%), Gaps = 2/109 (1%)

Query: 19  DGLEEGGLKASSSYSSGID--EHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRM 76
           DG   GG       +SG +  E +ND+  + L+ +   +K L+ +I  EV++ N+LL  M
Sbjct: 8   DGAPPGGYGNYGYANSGYNACEEENDRLTESLRSKVTAIKSLSIEIGHEVKNQNKLLAEM 67

Query: 77  GNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVLYYLIR 125
            +  D++ G +  TM R K++      + +C ++   +  FFV+Y++I+
Sbjct: 68  DSQFDSTTGFLGKTMGRLKILSRGSQTKLLCYMMLFSLFVFFVIYWIIK 116

Required for vesicular transport from the ER to the Golgi complex. Functions as a SNARE involved in the docking process of ER-derived vesicles with the cis-Golgi membrane.

Rattus norvegicus (taxid: 10116)

>sp|O35623|BET1_MOUSE BET1 homolog OS=Mus musculus GN=Bet1 PE=3 SV=1

 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 51/88 (57%)

Query: 38  EHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV 97
           E +ND+  + L+ +   +K L+ +I  EV++ N+LL  M +  D++ G +  TM R K++
Sbjct: 29  EEENDRLTESLRSKVTAIKSLSIEIGHEVKNQNKLLAEMDSQFDSTTGFLGKTMGRLKIL 88

Query: 98  FEKKSNRRICTLVGSFVVSFFVLYYLIR 125
                 + +C ++   +  FFV+Y++I+
Sbjct: 89  SRGSQTKLLCYMMLFSLFVFFVIYWIIK 116

Required for vesicular transport from the ER to the Golgi complex. Functions as a SNARE involved in the docking process of ER-derived vesicles with the cis-Golgi membrane.

Mus musculus (taxid: 10090)

>sp|O15155|BET1_HUMAN BET1 homolog OS=Homo sapiens GN=BET1 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/98 (26%), Positives = 57/98 (58%), Gaps = 2/98 (2%)

Query: 28  ASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIM 87
           A+S YS+   E +N++  + L+ +   +K L+ +I  EV++ N+LL  M +  D++ G +
Sbjct: 21  ANSGYSA--CEEENERLTESLRSKVTAIKSLSIEIGHEVKTQNKLLAEMDSQFDSTTGFL 78

Query: 88  SGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVLYYLIR 125
             TM + K++      + +C ++   +  FF++Y++I+
Sbjct: 79  GKTMGKLKILSRGSQTKLLCYMMLFSLFVFFIIYWIIK 116

Required for vesicular transport from the ER to the Golgi complex. Functions as a SNARE involved in the docking process of ER-derived vesicles with the cis-Golgi membrane.

Homo sapiens (taxid: 9606)

>sp|Q68EL3|BET1L_DANRE BET1-like protein OS=Danio rerio GN=bet1l PE=3 SV=1

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 30/89 (33%), Positives = 52/89 (58%), Gaps = 2/89 (2%)

Query: 38  EHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRF-KM 96
           + +N +  + L  +   LK L  DI ++ E  N  LD M ++  ++ G+++G++ RF  M
Sbjct: 17  DAENKRMAENLASKVSRLKSLAYDIDKDAEEQNAYLDGMDSNFLSATGLLTGSVKRFSTM 76

Query: 97  VFEKKSNRRI-CTLVGSFVVSFFVLYYLI 124
           V   + NR+I C +    VV+FF+LYYL+
Sbjct: 77  VRSGRDNRKILCYVSVGLVVAFFLLYYLV 105

Vesicle SNARE required for targeting and fusion of retrograde transport vesicles with the Golgi complex. Required for the integrity of the Golgi complex.

Danio rerio (taxid: 7955)

>sp|O35153|BET1L_MOUSE BET1-like protein OS=Mus musculus GN=Bet1l PE=3 SV=1

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 2/98 (2%)

Query: 29  SSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMS 88
           SS     I + +N +  D L  +   LK L  DI  + E  NR LD M +   +  G+++
Sbjct: 9   SSGAVEDILDRENKRMADSLASKVTRLKSLALDIDRDTEDQNRYLDGMDSDFTSVTGLLT 68

Query: 89  GTMDRF-KMVFEKKSNRR-ICTLVGSFVVSFFVLYYLI 124
           G++ RF  M    + NR+ +C +    +V+FF+L YL+
Sbjct: 69  GSVKRFSTMARSGRDNRKLLCGMAVVLIVAFFILSYLL 106

Vesicle SNARE required for targeting and fusion of retrograde transport vesicles with the Golgi complex. Required for the integrity of the Golgi complex.

Mus musculus (taxid: 10090)

>sp|Q3MHP8|BET1L_BOVIN BET1-like protein OS=Bos taurus GN=BET1L PE=3 SV=1

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 36  IDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRF- 94
           I + +N +  D L  +   LK L  DI  + E  NR LD M +   +  G+++G++ RF 
Sbjct: 16  ILDRENKRMADSLASKVTRLKSLALDIDRDAEDQNRYLDGMDSDFTSMTGLLTGSVKRFS 75

Query: 95  KMVFEKKSNRR-ICTLVGSFVVSFFVLYYLI 124
            M    + NR+ +C +    +V+FF+L YL+
Sbjct: 76  TMARSGRDNRKLLCGVAVGLIVAFFILSYLL 106

Vesicle SNARE required for targeting and fusion of retrograde transport vesicles with the Golgi complex. Required for the integrity of the Golgi complex.

Bos taurus (taxid: 9913)

>sp|Q5RBX2|BET1L_PONAB BET1-like protein OS=Pongo abelii GN=BET1L PE=3 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 36  IDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRF- 94
           I + +N +  D L  +   LK L  DI ++ E  NR LD M +   +  G+++G++ RF 
Sbjct: 16  ILDRENKRMADNLASKVTRLKSLALDIDKDAEDQNRYLDGMDSDFTSMTGLLTGSVKRFS 75

Query: 95  KMVFEKKSNRR-ICTLVGSFVVSFFVLYYLI 124
            M    + NR+ +C +    +V+FF+L Y +
Sbjct: 76  TMARSGRDNRKLLCGMAVGLIVAFFILSYFL 106

Vesicle SNARE required for targeting and fusion of retrograde transport vesicles with the Golgi complex. Required for the integrity of the Golgi complex.

Pongo abelii (taxid: 9601)

>sp|O35152|BET1L_RAT BET1-like protein OS=Rattus norvegicus GN=Bet1l PE=1 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 36  IDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFK 95
           I + +N +  D L  +   LK L  DI  + E  NR LD M +   +  G+++G++ RF 
Sbjct: 16  IVDRENKRMADSLASKVTRLKSLALDIDRDTEDQNRYLDGMDSDFTSVTGLLTGSVKRFS 75

Query: 96  MVFEKKSNRR--ICTLVGSFVVSFFVLYYL 123
            V     + R  +C +    +V+FF+L YL
Sbjct: 76  TVARSGRDTRKLLCGMAVVLIVAFFILSYL 105

Vesicle SNARE required for targeting and fusion of retrograde transport vesicles with the Golgi complex. Required for the integrity of the Golgi complex.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
224107885	126	predicted protein [Populus trichocarpa]	0.952	0.944	0.727	4e-44
225433448	122	PREDICTED: bet1-like SNARE 1-1 [Vitis vi	0.976	1.0	0.688	1e-42
255576856	136	protein transporter, putative [Ricinus c	0.888	0.816	0.758	3e-42
225437830	123	PREDICTED: bet1-like SNARE 1-1 [Vitis vi	0.976	0.991	0.690	4e-42
30682860	130	Bet1-like SNARE 1-2 [Arabidopsis thalian	0.984	0.946	0.648	3e-41
297804854	131	ATBS14B [Arabidopsis lyrata subsp. lyrat	0.984	0.938	0.648	4e-41
188529683	122	bet1-like snare 1-1 [Malus x domestica]	0.976	1.0	0.648	1e-40
255560001	125	protein transporter, putative [Ricinus c	0.944	0.944	0.661	4e-40
449467371	128	PREDICTED: bet1-like SNARE 1-2-like [Cuc	0.96	0.937	0.696	4e-40
356536651	125	PREDICTED: bet1-like SNARE 1-2-like [Gly	0.896	0.896	0.714	5e-40

>gi|224107885|ref|XP_002314641.1| predicted protein [Populus trichocarpa] gi|222863681|gb|EEF00812.1| predicted protein [Populus trichocarpa]

 Score =  181 bits (460), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 88/121 (72%), Positives = 102/121 (84%), Gaps = 2/121 (1%)

Query: 5   REHRASKGALFDEYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHE 64
           REHR S+ ALFD  DGLEEGGL+ SSS+S   D+HDNDKA+  L++R +FLK LTGDIHE
Sbjct: 8   REHRNSRTALFD--DGLEEGGLRPSSSFSHETDDHDNDKAVHTLQDRVLFLKSLTGDIHE 65

Query: 65  EVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVLYYLI 124
           EVES NRLLDRMGN+MD SRGIMSGTMDRF+MVFEKKS+RR C L G F++SF +LYYLI
Sbjct: 66  EVESQNRLLDRMGNNMDTSRGIMSGTMDRFRMVFEKKSSRRTCALAGFFILSFLILYYLI 125

Query: 125 R 125
           R
Sbjct: 126 R 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433448|ref|XP_002285680.1| PREDICTED: bet1-like SNARE 1-1 [Vitis vinifera] gi|297741938|emb|CBI33373.3| unnamed protein product [Vitis vinifera]

 Score =  177 bits (448), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/125 (68%), Positives = 105/125 (84%), Gaps = 3/125 (2%)

Query: 1   MSYRREHRASKGALFDEYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTG 60
           M+ RR+HR ++ A FD   G+EEGG++ASSSYS  IDE DN+ A+DGL++R V LKRLTG
Sbjct: 1   MNSRRDHRGNRAATFD---GIEEGGIRASSSYSHEIDEVDNETAVDGLEDRVVMLKRLTG 57

Query: 61  DIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVL 120
           DIHEEVESHNR+LDR+GN MDASRGI+SGTM+RFKMVFE KS+RR+ TL+ SFVV F V+
Sbjct: 58  DIHEEVESHNRMLDRVGNEMDASRGILSGTMERFKMVFETKSSRRMFTLIASFVVIFLVI 117

Query: 121 YYLIR 125
           YYL R
Sbjct: 118 YYLTR 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576856|ref|XP_002529314.1| protein transporter, putative [Ricinus communis] gi|223531238|gb|EEF33083.1| protein transporter, putative [Ricinus communis]

 Score =  175 bits (443), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 88/116 (75%), Positives = 97/116 (83%), Gaps = 5/116 (4%)

Query: 10  SKGALFDEYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESH 69
           SK ALFD  DGLEEGGL+ASSSYS    EHDNDKA+D L++R  FLK+LTGDIHEEVESH
Sbjct: 22  SKSALFD--DGLEEGGLRASSSYSH---EHDNDKAVDSLQDRVSFLKKLTGDIHEEVESH 76

Query: 70  NRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVLYYLIR 125
           NRLLDRMGN MD SRG++SGTMDRFKMVFEKKS RR C L G F+ SF V+YYLIR
Sbjct: 77  NRLLDRMGNKMDISRGVLSGTMDRFKMVFEKKSGRRTCVLAGVFIASFLVIYYLIR 132

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437830|ref|XP_002262985.1| PREDICTED: bet1-like SNARE 1-1 [Vitis vinifera] gi|297744115|emb|CBI37085.3| unnamed protein product [Vitis vinifera]

 Score =  175 bits (443), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 87/126 (69%), Positives = 108/126 (85%), Gaps = 4/126 (3%)

Query: 1   MSYRREHRASKGALFDEYDGLEEGGLKASSSYSSG-IDEHDNDKAIDGLKERAVFLKRLT 59
           M+ RR++R ++ ALFD   G+EEGG++ASSSYSS  IDEHDN++A+DGL++R   LKRLT
Sbjct: 1   MNSRRDYRGNRIALFD---GIEEGGIRASSSYSSHEIDEHDNERAVDGLQDRVNLLKRLT 57

Query: 60  GDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFV 119
           GDIHEEVESHNR+LDR+GN MDASRGI+SGTMDRFKMVFE +S+RR+ TLV SFVV F +
Sbjct: 58  GDIHEEVESHNRMLDRVGNDMDASRGILSGTMDRFKMVFETRSSRRMFTLVASFVVIFLI 117

Query: 120 LYYLIR 125
           +YYL R
Sbjct: 118 IYYLTR 123

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30682860|ref|NP_849384.1| Bet1-like SNARE 1-2 [Arabidopsis thaliana] gi|66774053|sp|Q94CG2.4|BET12_ARATH RecName: Full=Bet1-like SNARE 1-2; Short=AtBET12; AltName: Full=Bet1/Sft1-like SNARE 14b; Short=AtBS14b gi|26449945|dbj|BAC42093.1| unknown protein [Arabidopsis thaliana] gi|109946547|gb|ABG48452.1| At4g14455 [Arabidopsis thaliana] gi|332658047|gb|AEE83447.1| Bet1-like SNARE 1-2 [Arabidopsis thaliana]

 Score =  172 bits (435), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 81/125 (64%), Positives = 107/125 (85%), Gaps = 2/125 (1%)

Query: 1   MSYRREHRASKGALFDEYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTG 60
           M++RRE+RAS+ +LFD  DGLEEG L+ASSSY+   DE DND+A++ L++R  FLKR+TG
Sbjct: 1   MNFRRENRASRTSLFDGLDGLEEGRLRASSSYAH--DERDNDEALENLQDRVSFLKRVTG 58

Query: 61  DIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVL 120
           DIHEEVE+HNRLLD++GN MD++RGIMSGT++RFK+VFEKKSNR+ C L+  FV+ F ++
Sbjct: 59  DIHEEVENHNRLLDKVGNKMDSARGIMSGTINRFKLVFEKKSNRKSCKLIAYFVLLFLIM 118

Query: 121 YYLIR 125
           YYLIR
Sbjct: 119 YYLIR 123

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804854|ref|XP_002870311.1| ATBS14B [Arabidopsis lyrata subsp. lyrata] gi|297316147|gb|EFH46570.1| ATBS14B [Arabidopsis lyrata subsp. lyrata]

 Score =  171 bits (434), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 81/125 (64%), Positives = 107/125 (85%), Gaps = 2/125 (1%)

Query: 1   MSYRREHRASKGALFDEYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTG 60
           ++YRRE+RAS+ +LFD  DGLEEG L+ASSSYS   DE DND+A++ L++R  FLKR+TG
Sbjct: 2   VNYRRENRASRTSLFDGLDGLEEGRLRASSSYSH--DERDNDEALENLQDRVSFLKRVTG 59

Query: 61  DIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVL 120
           DIHEEVE+HNRLLD++GN MD++RGIMSGT++RFK+VFE+KSNR+ C L+  FV+ F ++
Sbjct: 60  DIHEEVENHNRLLDKVGNKMDSARGIMSGTINRFKLVFEQKSNRKSCKLIAYFVLLFLIM 119

Query: 121 YYLIR 125
           YYLIR
Sbjct: 120 YYLIR 124

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|188529683|gb|ACD62528.1| bet1-like snare 1-1 [Malus x domestica]

 Score =  170 bits (430), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 81/125 (64%), Positives = 105/125 (84%), Gaps = 3/125 (2%)

Query: 1   MSYRREHRASKGALFDEYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTG 60
           M+ RR+ R +K ALFD   G+EEGG+++S+SYS  IDEHDN++A+DGL++R   LKRL+G
Sbjct: 1   MNARRDFRGNKVALFD---GIEEGGIRSSASYSHEIDEHDNERAVDGLQDRVNLLKRLSG 57

Query: 61  DIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVL 120
           DIHEEVE+HN +LDRMGN MD+SRG++SGTMD+FKMVFE KS++R+ TLV SFVV F V+
Sbjct: 58  DIHEEVETHNHMLDRMGNDMDSSRGVLSGTMDKFKMVFETKSSQRMFTLVASFVVIFLVI 117

Query: 121 YYLIR 125
           YYL R
Sbjct: 118 YYLTR 122

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560001|ref|XP_002521019.1| protein transporter, putative [Ricinus communis] gi|223539856|gb|EEF41436.1| protein transporter, putative [Ricinus communis]

 Score =  168 bits (426), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 80/121 (66%), Positives = 102/121 (84%), Gaps = 3/121 (2%)

Query: 5   REHRASKGALFDEYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHE 64
           R+ R S+ ALFD   G+EEGG++ASSSYS  IDE DN++A++GL++R + LKRL+GDIHE
Sbjct: 8   RDVRTSRTALFD---GIEEGGIRASSSYSHEIDEQDNERAMEGLQDRVILLKRLSGDIHE 64

Query: 65  EVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVLYYLI 124
           EVE HNR+LDRMGN MD+SRG++SGTMDRFKMVFE KS+RR+ TLV SF+V F ++YYL 
Sbjct: 65  EVEGHNRMLDRMGNDMDSSRGVLSGTMDRFKMVFETKSSRRMFTLVASFLVIFLIVYYLT 124

Query: 125 R 125
           R
Sbjct: 125 R 125

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449467371|ref|XP_004151397.1| PREDICTED: bet1-like SNARE 1-2-like [Cucumis sativus]

 Score =  168 bits (425), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 87/125 (69%), Positives = 99/125 (79%), Gaps = 5/125 (4%)

Query: 1   MSYRREHRASKGALFDEYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTG 60
           MSYRREHR+S+ ALFD+   LEEGGL+ SSS    I EHDNDKA+  L++R   LKRLTG
Sbjct: 1   MSYRREHRSSRSALFDD---LEEGGLRTSSSVE--IKEHDNDKALHTLEDRVSILKRLTG 55

Query: 61  DIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVL 120
           DIHEEVESHN LLDRMGN MDASRGIMS TMDRFKMVFE+K+  R C L   FV+SF +L
Sbjct: 56  DIHEEVESHNHLLDRMGNGMDASRGIMSRTMDRFKMVFEQKTKWRTCRLALYFVLSFLLL 115

Query: 121 YYLIR 125
           +YLIR
Sbjct: 116 FYLIR 120

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536651|ref|XP_003536850.1| PREDICTED: bet1-like SNARE 1-2-like [Glycine max]

 Score =  167 bits (424), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 80/112 (71%), Positives = 94/112 (83%)

Query: 14  LFDEYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLL 73
           L D +D LEEGGL+ASSSYS  I+EHDNDKAI+ L++R  FLKRLTGDIHEEVESHN+LL
Sbjct: 14  LVDGFDSLEEGGLRASSSYSREINEHDNDKAIENLQDRVSFLKRLTGDIHEEVESHNQLL 73

Query: 74  DRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVLYYLIR 125
           DR+GN MD SRG+M GTMDRFK VFEKKS R+ C+LVG F ++F  +YYLIR
Sbjct: 74  DRVGNKMDGSRGVMMGTMDRFKKVFEKKSARKTCSLVGYFTLAFIFIYYLIR 125

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	125
TAIR|locus:1005716319	130	ATBET12 [Arabidopsis thaliana	0.864	0.830	0.663	4.4e-36
TAIR|locus:2085360	122	BS14A "BET1P/SFT1P-like protei	0.856	0.877	0.618	2e-33
ZFIN|ZDB-GENE-040625-3	113	bet1 "blocked early in transpo	0.712	0.787	0.319	7.6e-09
WB|WBGene00043064	107	nbet-1 [Caenorhabditis elegans	0.688	0.803	0.310	9.7e-09
RGD|2203	118	Bet1 "Bet1 golgi vesicular mem	0.736	0.779	0.276	1.4e-07
UNIPROTKB|E1BRC4	115	BET1 "Uncharacterized protein"	0.728	0.791	0.265	2.9e-07
POMBASE|SPAC23C4.13	117	bet1 "SNARE Bet1 (predicted)"	0.48	0.512	0.383	1e-06
MGI|MGI:1343104	118	Bet1 "blocked early in transpo	0.648	0.686	0.265	1.3e-06
UNIPROTKB|O15155	118	BET1 "BET1 homolog" [Homo sapi	0.648	0.686	0.265	1.6e-06
DICTYBASE|DDB_G0282433	153	DDB_G0282433 [Dictyostelium di	0.424	0.346	0.358	5.5e-06

TAIR|locus:1005716319 ATBET12 [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 73/110 (66%), Positives = 96/110 (87%)

Query:     1 MSYRREHRASKGALFDEYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTG 60
             M++RRE+RAS+ +LFD  DGLEEG L+ASSSY+   DE DND+A++ L++R  FLKR+TG
Sbjct:     1 MNFRRENRASRTSLFDGLDGLEEGRLRASSSYAH--DERDNDEALENLQDRVSFLKRVTG 58

Query:    61 DIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLV 110
             DIHEEVE+HNRLLD++GN MD++RGIMSGT++RFK+VFEKKSNR+ C L+
Sbjct:    59 DIHEEVENHNRLLDKVGNKMDSARGIMSGTINRFKLVFEKKSNRKSCKLI 108

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS;NAS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005484 "SNAP receptor activity" evidence=IGI;NAS

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

TAIR|locus:2085360 BS14A "BET1P/SFT1P-like protein 14A" [Arabidopsis thaliana (taxid:3702)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 68/110 (61%), Positives = 93/110 (84%)

Query:     1 MSYRREHRASKGALFDEYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTG 60
             M+ RRE R  + +LFD   G+EEGG++A+SSYS  I+EH+N++A++GL++R + LKRL+G
Sbjct:     1 MNPRREPRGGRSSLFD---GIEEGGIRAASSYSHEINEHENERALEGLQDRVILLKRLSG 57

Query:    61 DIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLV 110
             DI+EEV++HNR+LDRMGN MD+SRG +SGTMDRFK VFE KS+RR+ TLV
Sbjct:    58 DINEEVDTHNRMLDRMGNDMDSSRGFLSGTMDRFKTVFETKSSRRMLTLV 107

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005484 "SNAP receptor activity" evidence=IGI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

ZFIN|ZDB-GENE-040625-3 bet1 "blocked early in transport 1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
 Identities = 30/94 (31%), Positives = 53/94 (56%)

Query:    20 GLEEGGLKAS---SSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRM 76
             GL EGG + +   S YS  + E +N+   +GL+++   LK L+ DI  EV+ HN++L  M
Sbjct:     5 GLGEGGPQGNYVASGYS--VYEEENEHLQEGLRDKVHALKHLSIDIGNEVKIHNKMLGEM 62

Query:    77 GNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLV 110
              +  D++ G++  TM R K++      +  C ++
Sbjct:    63 DSDFDSTGGLLGATMGRLKLLSRGSQTKVYCYML 96

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

WB|WBGene00043064 nbet-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 27/87 (31%), Positives = 47/87 (54%)

Query:    24 GGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDAS 83
             G ++  +  ++ ++ H ND  + GL  +   LKR+T  I ++V   NRLL+ M N  D+S
Sbjct:     6 GQMRGPNQDANYLERH-NDDLVGGLSSKVAALKRVTIAIGDDVREQNRLLNDMDNDFDSS 64

Query:    84 RGIMSGTMDRFKMVFEKKSNRRICTLV 110
             +G++  TM R  +V        +C L+
Sbjct:    65 KGLLQSTMRRLGLVSRAGGKNMLCYLI 91

GO:0016021 "integral to membrane" evidence=IEA

RGD|2203 Bet1 "Bet1 golgi vesicular membrane trafficking protein" [Rattus norvegicus (taxid:10116)]

 Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 26/94 (27%), Positives = 49/94 (52%)

Query:    19 DGLEEGGLKASSSYSSGID--EHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRM 76
             DG   GG       +SG +  E +ND+  + L+ +   +K L+ +I  EV++ N+LL  M
Sbjct:     8 DGAPPGGYGNYGYANSGYNACEEENDRLTESLRSKVTAIKSLSIEIGHEVKNQNKLLAEM 67

Query:    77 GNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLV 110
              +  D++ G +  TM R K++      + +C ++
Sbjct:    68 DSQFDSTTGFLGKTMGRLKILSRGSQTKLLCYMM 101

GO:0000139 "Golgi membrane" evidence=IEA;ISO

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IDA

GO:0031201 "SNARE complex" evidence=IDA;TAS

GO:0031985 "Golgi cisterna" evidence=IDA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IDA

UNIPROTKB|E1BRC4 BET1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
 Identities = 25/94 (26%), Positives = 51/94 (54%)

Query:    20 GLEEGGLKASSSYS-SG--IDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRM 76
             GL +G    +  Y+ SG  + E +N++  + L+ +   +K L+ +I  EV++ N+LL  M
Sbjct:     5 GLGDGAPTGNYGYTNSGYSVYEEENERLTESLRTKVSAIKSLSIEIGTEVKNQNKLLSEM 64

Query:    77 GNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLV 110
              N  D++ G++  TM R + +      + +C ++
Sbjct:    65 DNDFDSATGLLGATMGRLRRLSRGSQTKLLCYMM 98

GO:0000139 "Golgi membrane" evidence=IEA

POMBASE|SPAC23C4.13 bet1 "SNARE Bet1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 23/60 (38%), Positives = 38/60 (63%)

Query:    38 EHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV 97
             E++ND+ I  L  +   LK LT +I  E+ S  +L++ M +S D+++ ++SGTM R K V
Sbjct:    31 ENENDERISKLTGKVKSLKELTMNIGTEITSSTKLMESMNDSFDSTKSLLSGTMTRLKNV 90

GO:0000139 "Golgi membrane" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IDA

GO:0005484 "SNAP receptor activity" evidence=ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=NAS

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1343104 Bet1 "blocked early in transport 1 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 22/83 (26%), Positives = 47/83 (56%)

Query:    28 ASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIM 87
             A++ Y++   E +ND+  + L+ +   +K L+ +I  EV++ N+LL  M +  D++ G +
Sbjct:    21 ANTGYNAC--EEENDRLTESLRSKVTAIKSLSIEIGHEVKNQNKLLAEMDSQFDSTTGFL 78

Query:    88 SGTMDRFKMVFEKKSNRRICTLV 110
               TM R K++      + +C ++
Sbjct:    79 GKTMGRLKILSRGSQTKLLCYMM 101

GO:0000139 "Golgi membrane" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO

GO:0016192 "vesicle-mediated transport" evidence=TAS

GO:0031201 "SNARE complex" evidence=ISO

GO:0031985 "Golgi cisterna" evidence=ISO

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=ISO

UNIPROTKB|O15155 BET1 "BET1 homolog" [Homo sapiens (taxid:9606)]

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 22/83 (26%), Positives = 47/83 (56%)

Query:    28 ASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIM 87
             A+S YS+   E +N++  + L+ +   +K L+ +I  EV++ N+LL  M +  D++ G +
Sbjct:    21 ANSGYSAC--EEENERLTESLRSKVTAIKSLSIEIGHEVKTQNKLLAEMDSQFDSTTGFL 78

Query:    88 SGTMDRFKMVFEKKSNRRICTLV 110
               TM + K++      + +C ++
Sbjct:    79 GKTMGKLKILSRGSQTKLLCYMM 101

GO:0015031 "protein transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031985 "Golgi cisterna" evidence=IEA

GO:0048280 "vesicle fusion with Golgi apparatus" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

DICTYBASE|DDB_G0282433 DDB_G0282433 [Dictyostelium discoideum (taxid:44689)]

 Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
 Identities = 19/53 (35%), Positives = 33/53 (62%)

Query:    41 NDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDR 93
             ND+ I+ + ++A  LKR+  DI  +V+  N LLD +   M  ++ ++SGTM +
Sbjct:    51 NDQTIEAMNQKANILKRVVLDIESQVQESNSLLDNLNADMSGAQALLSGTMKK 103

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q94CG2	BET12_ARATH	No assigned EC number	0.648	0.984	0.9461	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	125
pfam05739	62	pfam05739, SNARE, SNARE domain	7e-11
cd00193	60	cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-se	0.002

>gnl|CDD|203323 pfam05739, SNARE, SNARE domain

 Score = 53.3 bits (129), Expect = 7e-11
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 41  NDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK 100
            D+A++ L+     LK+L  D+ EEVE    LLDR+ +++D ++  +     R K     
Sbjct: 1   RDEALEELESSIGELKQLFLDMGEEVEEQGELLDRIDDNVDNTQSRVERANKRLKKAARY 60

Query: 101 KS 102
           + 
Sbjct: 61  QK 62

Most if not all vesicular membrane fusion events in eukaryotic cells are believed to be mediated by a conserved fusion machinery, the SNARE [soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptors] machinery. The SNARE domain is thought to act as a protein-protein interaction module in the assembly of a SNARE protein complex. Length = 62

>gnl|CDD|238115 cd00193, t_SNARE, Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent

 Score = 34.0 bits (79), Expect = 0.002
 Identities = 14/54 (25%), Positives = 28/54 (51%)

Query: 40 DNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDR 93
          + D+ ++ L+     LK++  D+  EVE    LLDR+ +++D +   +     R
Sbjct: 3  ERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKR 56

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	125
KOG3385	118	consensus V-SNARE [Intracellular trafficking, secr	99.97
KOG3202	235	consensus SNARE protein TLG1/Syntaxin 6 [Intracell	99.82
PF05739	63	SNARE: SNARE domain; InterPro: IPR000727 The proce	99.46
cd00193	60	t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu	99.2
PF09753	251	Use1: Membrane fusion protein Use1; InterPro: IPR0	99.14
smart00397	66	t_SNARE Helical region found in SNAREs. All alpha-	99.1
KOG3065	273	consensus SNAP-25 (synaptosome-associated protein)	99.04
KOG0810	297	consensus SNARE protein Syntaxin 1 and related pro	98.49
COG5325	283	t-SNARE complex subunit, syntaxin [Intracellular t	98.4
KOG0812	311	consensus SNARE protein SED5/Syntaxin 5 [Intracell	98.33
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	98.29
KOG0809	305	consensus SNARE protein TLG2/Syntaxin 16 [Intracel	98.24
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	98.09
PF03908	92	Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr	98.05
KOG2678	244	consensus Predicted membrane protein [Function unk	97.93
KOG3208	231	consensus SNARE protein GS28 [Intracellular traffi	97.4
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	97.08
KOG3251	213	consensus Golgi SNAP receptor complex member [Intr	97.03
PF12352	66	V-SNARE_C: Snare region anchored in the vesicle me	96.67
KOG1666	220	consensus V-SNARE [Intracellular trafficking, secr	96.65
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	96.49
KOG0860	116	consensus Synaptobrevin/VAMP-like protein [Intrace	96.14
KOG3894	316	consensus SNARE protein Syntaxin 18/UFE1 [Intracel	96.07
PF10779	71	XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly	95.83
PF09753	251	Use1: Membrane fusion protein Use1; InterPro: IPR0	95.77
KOG0860	116	consensus Synaptobrevin/VAMP-like protein [Intrace	95.43
PF05957	94	DUF883: Bacterial protein of unknown function (DUF	93.78
PF01519	102	DUF16: Protein of unknown function DUF16; InterPro	92.09
PRK00846	77	hypothetical protein; Provisional	91.27
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	91.23
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	90.36
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	90.06
PRK00736	68	hypothetical protein; Provisional	89.71
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	89.52
PRK10884	206	SH3 domain-containing protein; Provisional	89.07
PF15188	85	CCDC-167: Coiled-coil domain-containing protein 16	88.97
PRK04325	74	hypothetical protein; Provisional	88.73
KOG0862	216	consensus Synaptobrevin/VAMP-like protein SEC22 [I	88.24
PRK00295	68	hypothetical protein; Provisional	88.21
PRK02119	73	hypothetical protein; Provisional	87.65
PRK02793	72	phi X174 lysis protein; Provisional	87.26
PF08372	156	PRT_C: Plant phosphoribosyltransferase C-terminal;	86.96
PRK04406	75	hypothetical protein; Provisional	86.83
KOG3202	235	consensus SNARE protein TLG1/Syntaxin 6 [Intracell	86.65
TIGR00383	318	corA magnesium Mg(2+) and cobalt Co(2+) transport	86.39
PF05531	75	NPV_P10: Nucleopolyhedrovirus P10 protein; InterPr	86.13
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	85.82
PF11166	98	DUF2951: Protein of unknown function (DUF2951); In	84.8
PF04210	70	MtrG: Tetrahydromethanopterin S-methyltransferase,	84.65
KOG1666	220	consensus V-SNARE [Intracellular trafficking, secr	83.25
COG2900	72	SlyX Uncharacterized protein conserved in bacteria	82.87
PF15106	226	TMEM156: TMEM156 protein family	82.14
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	80.82
TIGR01149	70	mtrG N5-methyltetrahydromethanopterin:coenzyme M m	80.07

>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.6e-30  Score=180.07  Aligned_cols=117  Identities=35%  Similarity=0.553  Sum_probs=110.6

Q ss_pred             ccccccCCCCCCCCCCCCCCCCCCCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhh
Q 039203            9 ASKGALFDEYDGLEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMS   88 (125)
Q Consensus         9 ~~r~~l~~~~~~~~~~~~~~~~~~~~~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~   88 (125)
                      .+|..+|++.+|..++.|+|+|++.-+.+|.|||+.++.|.++|.+||.++.+|++||+.||++||.|+++||+|...|.
T Consensus         2 ~~R~g~~dg~~~l~~~~~~a~ss~~~~~le~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~   81 (118)
T KOG3385|consen    2 GSRFGLFDGSNGLEDGVSRASSSSHLASLERENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLS   81 (118)
T ss_pred             CcccCcccCCCcccccccccCchhhHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHH
Confidence            57889999989999999999998888999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHhcCCcceehHHHHHHHHHHHHHHHhC
Q 039203           89 GTMDRFKMVFEKKSNRRICTLVGSFVVSFFVLYYLIR  125 (125)
Q Consensus        89 ~t~~rl~~v~~~~~~~~~~~lI~~lvviflvly~l~k  125 (125)
                      +|+.|++.+.++++.+.+||+++|++|+||++||+++
T Consensus        82 gtm~r~~~~ar~sg~~l~~~m~~f~lV~~fi~~~~lt  118 (118)
T KOG3385|consen   82 GTMGRLKTMARRSGISLLCWMAVFSLVAFFILWVWLT  118 (118)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhheeeC
Confidence            9999999999997778899999999999999998875

>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=1.6e-19  Score=139.60  Aligned_cols=114  Identities=21%  Similarity=0.250  Sum_probs=87.5

Q ss_pred             cccccCCCCCCCC-CCC-CCCCCCCC-c------chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 039203           10 SKGALFDEYDGLE-EGG-LKASSSYS-S------GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSM   80 (125)
Q Consensus        10 ~r~~l~~~~~~~~-~~~-~~~~~~~~-~------~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~   80 (125)
                      .|..+.+++.+-- ++. +++++..+ .      +++.+|||+.||.|+++|+++|++|..||+|+++|+.+||++++.|
T Consensus       110 ~r~~l~~~~~~~~~~~~~~~~~~~D~v~~~~~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~  189 (235)
T KOG3202|consen  110 IRDILLGPEKSPNLDEAMSRASGLDNVQEIVQLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEM  189 (235)
T ss_pred             chhhhcCCCCCCchhhhHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            3666776554421 222 24444332 2      7888999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhhhHHHHHHHHHHhcCCcceehHH-HHHHHHHHHHHHH
Q 039203           81 DASRGIMSGTMDRFKMVFEKKSNRRICTLV-GSFVVSFFVLYYL  123 (125)
Q Consensus        81 d~t~~~L~~t~~rl~~v~~~~~~~~~~~lI-~~lvviflvly~l  123 (125)
                      |.|..+|.++++++.+|.+.++.|..||+| ++++++++++.++
T Consensus       190 d~t~srl~~~~~~l~~v~~~~s~~~~~~~il~l~~~~~lvv~i~  233 (235)
T KOG3202|consen  190 DRTESRLDRVMKRLAKVNRMASQCSQWCAILLLVGLLLLVVIIF  233 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHh
Confidence            999999999999999999877777655544 4444444444444

>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]

Probab=99.46  E-value=6.5e-13  Score=82.69  Aligned_cols=61  Identities=28%  Similarity=0.453  Sum_probs=59.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203           40 DNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK  100 (125)
Q Consensus        40 eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~  100 (125)
                      |+|+.|+.|+++|..||+++.+|+.||++|+.+||++++.|+.+...|+++++++.++.+.
T Consensus         1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~   61 (63)
T PF05739_consen    1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKY   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6899999999999999999999999999999999999999999999999999999999875

Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....

>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent

Probab=99.20  E-value=9.1e-11  Score=71.40  Aligned_cols=59  Identities=27%  Similarity=0.396  Sum_probs=56.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHH
Q 039203           38 EHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKM   96 (125)
Q Consensus        38 e~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~   96 (125)
                      ++++|+.++.|+.+|..|++++.+|+.||..|+++||.+++.++++...++.+.+++.+
T Consensus         1 ~~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~k   59 (60)
T cd00193           1 EQERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKK   59 (60)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            36889999999999999999999999999999999999999999999999999999876

>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport

Probab=99.14  E-value=7.2e-10  Score=86.31  Aligned_cols=90  Identities=16%  Similarity=0.194  Sum_probs=79.4

Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCCcceehHHHHHHH
Q 039203           36 IDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVV  115 (125)
Q Consensus        36 ~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~~~~~~lI~~lvv  115 (125)
                      .-+..||+..++|.+=++.||+-+..+++-|++.+..|+.....+|+....|+.+.+|++...+++.+|+.|.+|+++++
T Consensus       160 ~~~~~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~~~i~~v~~  239 (251)
T PF09753_consen  160 HHRNLQEDLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTWLMIFVVII  239 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999877655545556666677


Q ss_pred             HHHHHHHHhC
Q 039203          116 SFFVLYYLIR  125 (125)
Q Consensus       116 iflvly~l~k  125 (125)
                      +|+++|+++|
T Consensus       240 ~Fi~mvl~ir  249 (251)
T PF09753_consen  240 VFIMMVLFIR  249 (251)
T ss_pred             HHHHHHHHhe
Confidence            8888888876

They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].

>smart00397 t_SNARE Helical region found in SNAREs

Probab=99.10  E-value=6e-10  Score=68.77  Aligned_cols=62  Identities=23%  Similarity=0.319  Sum_probs=59.1

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHH
Q 039203           35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKM   96 (125)
Q Consensus        35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~   96 (125)
                      ...++++|+.++.|+..+..+++++.+|+.||..|+++||.+++.++++...++.+.+++.+
T Consensus         4 ~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~   65 (66)
T smart00397        4 DQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK   65 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence            45789999999999999999999999999999999999999999999999999999999875

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".

>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.04  E-value=1.1e-09  Score=86.74  Aligned_cols=64  Identities=27%  Similarity=0.300  Sum_probs=61.4

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHH
Q 039203           35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVF   98 (125)
Q Consensus        35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~   98 (125)
                      +..+.|.|+.|++|++.+.+||++|.++|.||+.||+.||.|++.+|+...++..+++|+++++
T Consensus       210 ~~~edeiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kLl  273 (273)
T KOG3065|consen  210 PAAEDEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKLL  273 (273)
T ss_pred             ChhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhcC
Confidence            6778899999999999999999999999999999999999999999999999999999999873

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=1.2e-06  Score=70.20  Aligned_cols=56  Identities=23%  Similarity=0.323  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHH
Q 039203           44 AIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFE   99 (125)
Q Consensus        44 ~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~   99 (125)
                      .+-.|..++.-|+++..+|.-.|+.|.+++|.++..+.++..-+..+...+++..+
T Consensus       207 ~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~  262 (297)
T KOG0810|consen  207 EIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVK  262 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36788999999999999999999999999999999999999999999999997754

>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=98.40  E-value=3.7e-06  Score=66.54  Aligned_cols=88  Identities=18%  Similarity=0.224  Sum_probs=74.4

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh---cCCcceehHHH
Q 039203           35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK---KSNRRICTLVG  111 (125)
Q Consensus        35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~---~~~~~~~~lI~  111 (125)
                      +.+..|-|+.+..|+.+|.-|..+-.+++.=|.+|..+.|.++..+++|...++++.+.+.+...-   .+.|+.|++++
T Consensus       187 q~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Lli  266 (283)
T COG5325         187 QILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLI  266 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHH
Confidence            445567799999999999999999999999999999999999999999999999999999999653   44556777777


Q ss_pred             HHHHHHHHHHH
Q 039203          112 SFVVSFFVLYY  122 (125)
Q Consensus       112 ~lvviflvly~  122 (125)
                      ++||++|++..
T Consensus       267 l~vv~lfv~l~  277 (283)
T COG5325         267 LLVVLLFVSLI  277 (283)
T ss_pred             HHHHHHHHHHH
Confidence            77766555543

>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.33  E-value=7e-06  Score=65.36  Aligned_cols=80  Identities=18%  Similarity=0.349  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh-cCCcceehHHHHHHHHHHHHHHH
Q 039203           45 IDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK-KSNRRICTLVGSFVVSFFVLYYL  123 (125)
Q Consensus        45 Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~-~~~~~~~~lI~~lvviflvly~l  123 (125)
                      +..+++++.-|-++-.++-.-|.+|.+++-.+|+.|+.+...+..+..-|-+.+.. +++++++.=|++++++||++||+
T Consensus       229 ~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivFflvfvl  308 (311)
T KOG0812|consen  229 MQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGILIVFFLVFVL  308 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            44567777788899999999999999999999999999999999999999999988 44555555577777788888887


Q ss_pred             h
Q 039203          124 I  124 (125)
Q Consensus       124 ~  124 (125)
                      +
T Consensus       309 f  309 (311)
T KOG0812|consen  309 F  309 (311)
T ss_pred             h
Confidence            6

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.29  E-value=1.4e-05  Score=63.43  Aligned_cols=77  Identities=13%  Similarity=0.231  Sum_probs=65.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh--cCCcceehHHHHHHH
Q 039203           39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK--KSNRRICTLVGSFVV  115 (125)
Q Consensus        39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~--~~~~~~~~lI~~lvv  115 (125)
                      ++-++.+..|+..+.-+..|-.+++.=|.+|..++|.++..++++...+..+++.+.+..+.  +..++.|++++|+++
T Consensus       176 eeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~v~~~  254 (269)
T KOG0811|consen  176 EEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILLLVGGP  254 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHH
Confidence            55666788888999999999999999999999999999999999999999999999999773  344555665555544

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.24  E-value=1.2e-05  Score=64.26  Aligned_cols=85  Identities=14%  Similarity=0.241  Sum_probs=65.1

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh-cCCcceehHHHHHHHHH
Q 039203           39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK-KSNRRICTLVGSFVVSF  117 (125)
Q Consensus        39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~-~~~~~~~~lI~~lvvif  117 (125)
                      .|-|+.+-.+..+|.-|.++-.+++.=|-+|...+|.++-.+++|...++.+.+.+.|.-.. ..++.+|++.+++++||
T Consensus       214 ~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L~l~ii  293 (305)
T KOG0809|consen  214 REREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILMLTLLII  293 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHHHHHHH
Confidence            34456688899999999999999999999999999999999999999999999999999653 34444444333333333


Q ss_pred             HHHHHH
Q 039203          118 FVLYYL  123 (125)
Q Consensus       118 lvly~l  123 (125)
                      ++|.++
T Consensus       294 ~llvll  299 (305)
T KOG0809|consen  294 ALLVLL  299 (305)
T ss_pred             HHHHHH
Confidence            333333

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=98.09  E-value=3.2e-05  Score=60.30  Aligned_cols=78  Identities=12%  Similarity=0.207  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh----cCCcceehHHHHHHHHHHH
Q 039203           44 AIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK----KSNRRICTLVGSFVVSFFV  119 (125)
Q Consensus        44 ~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~----~~~~~~~~lI~~lvviflv  119 (125)
                      .+-.|..++.-|-++-.+|..+|.+|.++.|-++.++..+...+...+..+.+.++.    ...++.||.|||++++|++
T Consensus       186 ~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~iii~viv  265 (280)
T COG5074         186 EIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFIIIIVIV  265 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHHHHHHHH
Confidence            377899999999999999999999999999999999998888888777777777654    2355688888888777554


Q ss_pred             HH
Q 039203          120 LY  121 (125)
Q Consensus       120 ly  121 (125)
                      .+
T Consensus       266 ~v  267 (280)
T COG5074         266 VV  267 (280)
T ss_pred             HH
Confidence            33

>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway

Probab=98.05  E-value=0.00012  Score=49.01  Aligned_cols=82  Identities=13%  Similarity=0.181  Sum_probs=61.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCCcceehHHHHHHHHHHHHHHH
Q 039203           44 AIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVLYYL  123 (125)
Q Consensus        44 ~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~~~~~~lI~~lvviflvly~l  123 (125)
                      .|......++.--..+..--+++.+|+.-|..+++.++.....|+.+.+-++++-++...-.+++...|+++++.|+|++
T Consensus         9 ~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~yI~   88 (92)
T PF03908_consen    9 SLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVLYIL   88 (92)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence            33444444444445566667889999999999999999999999999999999987654334444566777777888887


Q ss_pred             hC
Q 039203          124 IR  125 (125)
Q Consensus       124 ~k  125 (125)
                      +|
T Consensus        89 ~r   90 (92)
T PF03908_consen   89 WR   90 (92)
T ss_pred             hh
Confidence            65

>KOG2678 consensus Predicted membrane protein [Function unknown]

Probab=97.93  E-value=8.3e-05  Score=57.47  Aligned_cols=85  Identities=15%  Similarity=0.183  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCC-cceehHHHHHHHHHHH
Q 039203           41 NDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSN-RRICTLVGSFVVSFFV  119 (125)
Q Consensus        41 qD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~-~~~~~lI~~lvviflv  119 (125)
                      |++..+.|..=+..||..+..-++-+++.|..+......+|.....|..+..|+.+-.++... |-.|.+|+|+++.|+.
T Consensus       153 QeeLaesll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~miI~v~~sFVs  232 (244)
T KOG2678|consen  153 QEELAESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYITMIIFVILSFVS  232 (244)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            345566777778889999999999999999999999999999999999999999999887643 3344466677777777


Q ss_pred             HHHHhC
Q 039203          120 LYYLIR  125 (125)
Q Consensus       120 ly~l~k  125 (125)
                      ++++++
T Consensus       233 Miliiq  238 (244)
T KOG2678|consen  233 MILIIQ  238 (244)
T ss_pred             HHHHHH
Confidence            777653

>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.40  E-value=0.0021  Score=49.64  Aligned_cols=87  Identities=15%  Similarity=0.171  Sum_probs=67.1

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCCcceeh--HHHH
Q 039203           35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICT--LVGS  112 (125)
Q Consensus        35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~~~~~~--lI~~  112 (125)
                      +++..|.+ .++.=..-|..+-.+|.+-.+.+..|..+|..++..+..+..++=....-+.++-.++ .+-.++  .|..
T Consensus       142 e~~lkE~~-~in~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kk-rrdslILa~Vis  219 (231)
T KOG3208|consen  142 EMYLKEHD-HINNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKK-RRDSLILAAVIS  219 (231)
T ss_pred             HHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHh-hhhhHHHHHHHH
Confidence            56666776 7777777888888999999999999999999999999999999999888888884433 233333  3444


Q ss_pred             HHHHHHHHHHH
Q 039203          113 FVVSFFVLYYL  123 (125)
Q Consensus       113 lvviflvly~l  123 (125)
                      ++++|+++||+
T Consensus       220 ~C~llllfy~~  230 (231)
T KOG3208|consen  220 VCTLLLLFYWI  230 (231)
T ss_pred             HHHHHHHHHHh
Confidence            45566667765

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=97.08  E-value=0.0083  Score=39.44  Aligned_cols=58  Identities=7%  Similarity=0.176  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHhhhhhhhhHHHHHHHHHH
Q 039203           42 DKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMG---NSMDASRGIMSGTMDRFKMVFE   99 (125)
Q Consensus        42 D~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~---~~~d~t~~~L~~t~~rl~~v~~   99 (125)
                      ++.+..+.+.|...+++-.+=-+.+-+-.+-|++|.   +.+........+..+++++-.-
T Consensus         2 ~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~   62 (89)
T PF00957_consen    2 NDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMW   62 (89)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            346777777777776544333333434444455554   4455555666666666666653

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.03  E-value=0.0039  Score=47.91  Aligned_cols=65  Identities=9%  Similarity=0.056  Sum_probs=52.0

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203           35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK  100 (125)
Q Consensus        35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~  100 (125)
                      +..-++|| .+..=+..+.-+=..|.+|=+-+.+|+..|......|-...+.|.=+..=|.-+-+.
T Consensus       122 D~el~~~d-~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR  186 (213)
T KOG3251|consen  122 DEELQEND-SLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERR  186 (213)
T ss_pred             hHHHHhhh-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            44445555 666677777777888999999999999999999999999999888777777666554

>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C

Probab=96.67  E-value=0.035  Score=34.41  Aligned_cols=64  Identities=13%  Similarity=0.150  Sum_probs=55.5

Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203           36 IDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK  100 (125)
Q Consensus        36 ~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~  100 (125)
                      .+.++++ .|+.=...+...-.+|.++..++..|.+.|......++.+...+..+.+-|+.+.++
T Consensus         2 ~l~~e~~-~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR   65 (66)
T PF12352_consen    2 RLLRESD-SLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRR   65 (66)
T ss_dssp             HHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcc
Confidence            3556666 777777888888999999999999999999999999999999999999888887543

>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.65  E-value=0.016  Score=44.71  Aligned_cols=68  Identities=12%  Similarity=0.253  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhc-CCcceehHHHHH--HHHHHHHHHHh
Q 039203           57 RLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKK-SNRRICTLVGSF--VVSFFVLYYLI  124 (125)
Q Consensus        57 ~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~-~~~~~~~lI~~l--vviflvly~l~  124 (125)
                      ++|..|-.++-.|-+-|..--...-.|++.|.++.+-+..+.++. .++.+|+.|+++  +++++++|+-+
T Consensus       149 qIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ilY~kf  219 (220)
T KOG1666|consen  149 QIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLILYSKF  219 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            788888899999999898888888999999999999999888763 455566644333  33555555433

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=96.49  E-value=0.037  Score=36.33  Aligned_cols=55  Identities=11%  Similarity=0.098  Sum_probs=37.1

Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHH
Q 039203           36 IDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTM   91 (125)
Q Consensus        36 ~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~   91 (125)
                      .++++-|+--+.+.+.+..+-+-+..+. ++++..+-|.+-...|.+...++++.+
T Consensus         7 ~i~~~v~~v~~im~~Ni~~ll~Rge~L~-~L~~kt~~L~~~a~~F~k~a~~l~r~~   61 (89)
T PF00957_consen    7 QIQEQVEEVKNIMRENIDKLLERGEKLE-ELEDKTEELSDNAKQFKKNAKKLKRKM   61 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCchHH-HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            4456666666666666666666666653 455666667777778888877777766

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.14  E-value=0.14  Score=35.88  Aligned_cols=52  Identities=17%  Similarity=0.260  Sum_probs=26.3

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh---hhhhhhHHHHHHHH
Q 039203           35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDAS---RGIMSGTMDRFKMV   97 (125)
Q Consensus        35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t---~~~L~~t~~rl~~v   97 (125)
                      +..++|-|+-.+.+...|          ..=++.+.+ ||+|++..|..   ...-+++..++++-
T Consensus        32 ~~tq~QvdeVv~IMr~NV----------~KVlER~ek-L~~L~drad~L~~~as~F~~~A~klkrk   86 (116)
T KOG0860|consen   32 QQTQAQVDEVVDIMRENV----------EKVLERGEK-LDELDDRADQLQAGASQFEKTAVKLKRK   86 (116)
T ss_pred             HHHHHHHHHHHHHHHHhH----------HHHHHhcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555554444          444455544 56665555443   34455555555554

>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.07  E-value=0.1  Score=42.33  Aligned_cols=111  Identities=17%  Similarity=0.202  Sum_probs=72.3

Q ss_pred             cccCCCCCCCCCC-CCCCCCCC-CcchhHHhHHHHHHHHHHH---HHH-------HHHHHHHHHHHHHHHHHHHHHhhhH
Q 039203           12 GALFDEYDGLEEG-GLKASSSY-SSGIDEHDNDKAIDGLKER---AVF-------LKRLTGDIHEEVESHNRLLDRMGNS   79 (125)
Q Consensus        12 ~~l~~~~~~~~~~-~~~~~~~~-~~~~le~eqD~~Ld~L~~~---V~~-------LK~ia~~I~~El~~Qn~lLD~l~~~   79 (125)
                      ..+.+++.+.|+. .+.++-+. ..+++|+||-+.+..+.+-   |..       .-.+-..+-+-|-.|..-+|-+-+.
T Consensus       189 ~s~~~~e~~~~~~~~~e~~~s~e~~Q~~E~En~~l~~~~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~  268 (316)
T KOG3894|consen  189 RSLADSELGQDEEKHYEDPLSKEQVQLLETENQRLLNELNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDL  268 (316)
T ss_pred             hcccchhhcCcccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444666776643 23332223 2266777766655555422   222       2233445667778888889999999


Q ss_pred             HHhhhhhhhhHHHHHHHHHHhcCCcceehHHHHHHHHHHHHHH
Q 039203           80 MDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVLYY  122 (125)
Q Consensus        80 ~d~t~~~L~~t~~rl~~v~~~~~~~~~~~lI~~lvviflvly~  122 (125)
                      ...++..++..+.-|.+....++..+-|++++++|..|+++++
T Consensus       269 ~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llvlsf~lLFl  311 (316)
T KOG3894|consen  269 QSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLVLSFSLLFL  311 (316)
T ss_pred             cccchhhhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence            9999999999999999998877666666666666665555543

>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes []

Probab=95.83  E-value=0.11  Score=33.06  Aligned_cols=61  Identities=11%  Similarity=0.278  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCCcceehHHHHHHHHHHHHHHHhC
Q 039203           62 IHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVLYYLIR  125 (125)
Q Consensus        62 I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~~~~~~lI~~lvviflvly~l~k  125 (125)
                      +...++.+.+-++.++..-+.....+.+..++++++-..  .++.+.+++. .++.+++|+++|
T Consensus        11 ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n--~kW~~r~iiG-aiI~~i~~~i~K   71 (71)
T PF10779_consen   11 IETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN--TKWIWRTIIG-AIITAIIYLIIK   71 (71)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHhC
Confidence            444555566667777777777777788888888888432  3444444444 444455677765

>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport

Probab=95.77  E-value=0.44  Score=37.04  Aligned_cols=83  Identities=13%  Similarity=0.209  Sum_probs=60.5

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh----cCCcceehHHHHHH
Q 039203           39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK----KSNRRICTLVGSFV  114 (125)
Q Consensus        39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~----~~~~~~~~lI~~lv  114 (125)
                      +.+...-+.|.+.   +=.+|..+.+-...=+..|.+=...++++...+......++..-++    .+.++.||+.++++
T Consensus       159 ~~~~~~QE~L~~e---m~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~~~i~  235 (251)
T PF09753_consen  159 QHHRNLQEDLTEE---MLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTWLMIF  235 (251)
T ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            3444455555544   4566888888887778889999999999999999999999888553    34455677777777


Q ss_pred             HHHHHHHHHh
Q 039203          115 VSFFVLYYLI  124 (125)
Q Consensus       115 viflvly~l~  124 (125)
                      +++++|++++
T Consensus       236 ~v~~~Fi~mv  245 (251)
T PF09753_consen  236 VVIIVFIMMV  245 (251)
T ss_pred             HHHHHHHHHH
Confidence            7777666554

They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].

>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.43  E-value=0.23  Score=34.88  Aligned_cols=21  Identities=10%  Similarity=0.196  Sum_probs=8.4

Q ss_pred             hhhHHHhhhhhhhhHHHHHHHH
Q 039203           76 MGNSMDASRGIMSGTMDRFKMV   97 (125)
Q Consensus        76 l~~~~d~t~~~L~~t~~rl~~v   97 (125)
                      |++--|+++ .|..+...+++-
T Consensus        59 L~~L~drad-~L~~~as~F~~~   79 (116)
T KOG0860|consen   59 LDELDDRAD-QLQAGASQFEKT   79 (116)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHH
Confidence            333333333 344444444443

>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD

Probab=93.78  E-value=1.3  Score=29.33  Aligned_cols=52  Identities=13%  Similarity=0.140  Sum_probs=33.7

Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHhhhhhh
Q 039203           36 IDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESH-NRLLDRMGNSMDASRGIM   87 (125)
Q Consensus        36 ~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Q-n~lLD~l~~~~d~t~~~L   87 (125)
                      .+.++-++..+.+..-+...+..+....+++.+. ...+++..+........+
T Consensus         2 ~l~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~   54 (94)
T PF05957_consen    2 DLKAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQA   54 (94)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4667777778888888877777777777777766 335555544444444333

>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function

Probab=92.09  E-value=1.2  Score=30.54  Aligned_cols=50  Identities=10%  Similarity=0.153  Sum_probs=35.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhh
Q 039203           40 DNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSG   89 (125)
Q Consensus        40 eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~   89 (125)
                      .|.++++.|.+.|..+-..=.....|++.|.+.|+.+...+.+.+.||.+
T Consensus        50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~   99 (102)
T PF01519_consen   50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDK   99 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            55667777777777777766777777777777777777777766666553

It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.

>PRK00846 hypothetical protein; Provisional

Probab=91.27  E-value=2  Score=28.06  Aligned_cols=52  Identities=10%  Similarity=0.065  Sum_probs=44.7

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhH
Q 039203           39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGT   90 (125)
Q Consensus        39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t   90 (125)
                      ++-+++++.|..++..+-..-..+|+.|-.|...||.|...+.....+|+..
T Consensus         9 ~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~   60 (77)
T PRK00846          9 QALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV   60 (77)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4566899999999999999999999999999999999988887777766654

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=91.23  E-value=2  Score=27.13  Aligned_cols=51  Identities=16%  Similarity=0.287  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHH
Q 039203           41 NDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTM   91 (125)
Q Consensus        41 qD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~   91 (125)
                      .++.++.|..++..+-..-..+++.|-.|.+.||.|...+.....+|+...
T Consensus         2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~   52 (69)
T PF04102_consen    2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE   52 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            367899999999999999999999999999999999998888888777643

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=90.36  E-value=4.4  Score=29.87  Aligned_cols=33  Identities=15%  Similarity=0.293  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHH
Q 039203           61 DIHEEVESHNRLLDRMGNSMDASRGIMSGTMDR   93 (125)
Q Consensus        61 ~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~r   93 (125)
                      .+.+|...++.-+.+++..++..-+.|+.....
T Consensus       117 ~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~  149 (177)
T PF07798_consen  117 RIREEQAKQELKIQELNNKIDTEIANLRTEIES  149 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555555555555555555444444443

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=90.06  E-value=3.3  Score=29.44  Aligned_cols=60  Identities=15%  Similarity=0.299  Sum_probs=50.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHH
Q 039203           39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVF   98 (125)
Q Consensus        39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~   98 (125)
                      .+.-++||.+..++...+.++..|.+|+.+=..-++.+..+++.....+..--.+|..+-
T Consensus        64 khLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie  123 (126)
T PF07889_consen   64 KHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE  123 (126)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            555678888888888899999999999988888888888888888888887777777664

The region featured in this family is approximately 100 amino acids long.

>PRK00736 hypothetical protein; Provisional

Probab=89.71  E-value=3  Score=26.37  Aligned_cols=48  Identities=10%  Similarity=0.235  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhh
Q 039203           42 DKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSG   89 (125)
Q Consensus        42 D~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~   89 (125)
                      ++.++.|..++..+-..-..+|+.|-.|.+-||.|...+.....+++.
T Consensus         4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~   51 (68)
T PRK00736          4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS   51 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357999999999999999999999999999998888777766666644

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.52  E-value=5.6  Score=31.73  Aligned_cols=85  Identities=11%  Similarity=-0.032  Sum_probs=49.5

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCCcceehHHHHHHHHH
Q 039203           38 EHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSF  117 (125)
Q Consensus        38 e~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~~~~~~lI~~lvvif  117 (125)
                      .++-+..+-++.+-..-|-.+-..=|+-|+.=..-++.....+......|.++.+-=.+..+.. ....|+.++++++++
T Consensus       182 I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~-~~ll~v~~~v~lii~  260 (269)
T KOG0811|consen  182 IEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKK-CILLLVGGPVGLIIG  260 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hhhhHHHHHHHHHHH
Confidence            3444445666666666666666666666666666667777777777777777666655554433 334455444445555


Q ss_pred             HHHHHH
Q 039203          118 FVLYYL  123 (125)
Q Consensus       118 lvly~l  123 (125)
                      +++|..
T Consensus       261 l~i~~~  266 (269)
T KOG0811|consen  261 LIIAGI  266 (269)
T ss_pred             HHHHHh
Confidence            555544

>PRK10884 SH3 domain-containing protein; Provisional

Probab=89.07  E-value=6.4  Score=30.09  Aligned_cols=62  Identities=8%  Similarity=0.111  Sum_probs=38.9

Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203           36 IDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV   97 (125)
Q Consensus        36 ~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v   97 (125)
                      .+++|.++.=+.|.+.-+...+....+.++++..+..+.+|...-+.....+..+.+++..+
T Consensus        97 ~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l  158 (206)
T PRK10884         97 DLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAA  158 (206)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444555666777777777777777777777777777777666666554

>PF15188 CCDC-167: Coiled-coil domain-containing protein 167

Probab=88.97  E-value=5  Score=26.66  Aligned_cols=76  Identities=16%  Similarity=0.321  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCCcceehHHHHHHHHHHHH
Q 039203           44 AIDGLKERAVFLKRLTGDIHEEVESHN---RLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVL  120 (125)
Q Consensus        44 ~Ld~L~~~V~~LK~ia~~I~~El~~Qn---~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~~~~~~lI~~lvviflvl  120 (125)
                      .+|.+.+++++.+.-=..|..-+....   +-=.+++..+......+.+--+.++.+-+.  +++.+.+.+.++++++++
T Consensus         6 eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkE--NrK~~~ls~~l~~v~~Lv   83 (85)
T PF15188_consen    6 EIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNEKELKLLRKE--NRKSMLLSVALFFVCFLV   83 (85)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccHHHHHHHHHh--hhhhHHHHHHHHHHHHHH
Confidence            456666666665544444443332211   111345577777888888888888888543  444444444444455555


Q ss_pred             H
Q 039203          121 Y  121 (125)
Q Consensus       121 y  121 (125)
                      |
T Consensus        84 Y   84 (85)
T PF15188_consen   84 Y   84 (85)
T ss_pred             c
Confidence            5

>PRK04325 hypothetical protein; Provisional

Probab=88.73  E-value=4.3  Score=26.04  Aligned_cols=49  Identities=16%  Similarity=0.223  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhh
Q 039203           41 NDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSG   89 (125)
Q Consensus        41 qD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~   89 (125)
                      -++.++.|..++..+-..-..+++.|-.|.+.|+.|...+.....+|+.
T Consensus         7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~   55 (74)
T PRK04325          7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD   55 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3457999999999999999999999999999998888776666555544

>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.24  E-value=3.4  Score=31.99  Aligned_cols=64  Identities=13%  Similarity=0.190  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCCcceehHHHHHHHHHHHHHHH
Q 039203           59 TGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRRICTLVGSFVVSFFVLYYL  123 (125)
Q Consensus        59 a~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~~~~~~lI~~lvviflvly~l  123 (125)
                      +.+|++=+. -++.|+.++..-++....=+...+..+.+...+-...++-+++|.++++|+++++
T Consensus       151 ~~niedvl~-rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~aa~~~~~~~l~f~~~f~  214 (216)
T KOG0862|consen  151 VENLEDVLQ-RGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYAAYVVFFVLLLFYVRFI  214 (216)
T ss_pred             HHhHHHHHh-hchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444333 3334555544444333322333333333333332333334566666665555554

>PRK00295 hypothetical protein; Provisional

Probab=88.21  E-value=4.4  Score=25.56  Aligned_cols=48  Identities=15%  Similarity=0.261  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhh
Q 039203           42 DKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSG   89 (125)
Q Consensus        42 D~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~   89 (125)
                      ++.++.|..++..+-..-..+|+.|-.|.+-||.|...+.....+++.
T Consensus         4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~   51 (68)
T PRK00295          4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE   51 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356999999999999999999999999999999888777777666654

>PRK02119 hypothetical protein; Provisional

Probab=87.65  E-value=5.5  Score=25.51  Aligned_cols=51  Identities=12%  Similarity=0.260  Sum_probs=41.8

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhh
Q 039203           39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSG   89 (125)
Q Consensus        39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~   89 (125)
                      ..-+++++.|..++..+-..-..+|+.|-.|.+-||.|...+.....+|+.
T Consensus         5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~   55 (73)
T PRK02119          5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD   55 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445678999999999999999999999999999998888777666555544

>PRK02793 phi X174 lysis protein; Provisional

Probab=87.26  E-value=5.7  Score=25.32  Aligned_cols=49  Identities=10%  Similarity=0.212  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhh
Q 039203           41 NDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSG   89 (125)
Q Consensus        41 qD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~   89 (125)
                      -+++++.|..++..+-..-..+++.|-.|.+-||.+...+.....+|+.
T Consensus         6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~   54 (72)
T PRK02793          6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA   54 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4678999999999999999999999999999888888776666555544

>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins

Probab=86.96  E-value=8.3  Score=28.36  Aligned_cols=38  Identities=16%  Similarity=0.348  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhh
Q 039203           43 KAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIM   87 (125)
Q Consensus        43 ~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L   87 (125)
                      +..+.+.....+|+.++..+.+       +|+++....++..+-+
T Consensus        52 ~~~~~lr~Rydrlr~va~rvQ~-------vlgd~At~gERl~all   89 (156)
T PF08372_consen   52 RPPDSLRMRYDRLRSVAGRVQN-------VLGDVATQGERLQALL   89 (156)
T ss_pred             cccHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhh
Confidence            3566788888888888876643       4566655555444433

It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).

>PRK04406 hypothetical protein; Provisional

Probab=86.83  E-value=6.4  Score=25.39  Aligned_cols=50  Identities=14%  Similarity=0.323  Sum_probs=41.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhh
Q 039203           40 DNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSG   89 (125)
Q Consensus        40 eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~   89 (125)
                      .-+++++.|..++..+-..-..+|+.|-.|.+-||.|...+.....+|+.
T Consensus         8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~   57 (75)
T PRK04406          8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN   57 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45678999999999999999999999999999998888777666555543

>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.65  E-value=1.5  Score=34.31  Aligned_cols=46  Identities=15%  Similarity=0.208  Sum_probs=27.4

Q ss_pred             hHHHhhhhhhhhHHHHHHHHHHh----cCCcceehHHHHHHHHHHHHHHH
Q 039203           78 NSMDASRGIMSGTMDRFKMVFEK----KSNRRICTLVGSFVVSFFVLYYL  123 (125)
Q Consensus        78 ~~~d~t~~~L~~t~~rl~~v~~~----~~~~~~~~lI~~lvviflvly~l  123 (125)
                      .-.|...+.+.+|-.|+.+..++    +.....|-..|.++++|.++.++
T Consensus       180 ~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~~~~~il~l~~~~~lv  229 (235)
T KOG3202|consen  180 RLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCSQWCAILLLVGLLLLV  229 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHH
Confidence            33455566677777777777654    23334666667776666555443

>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)

Probab=86.39  E-value=5.3  Score=31.49  Aligned_cols=49  Identities=16%  Similarity=0.225  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203           43 KAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV   97 (125)
Q Consensus        43 ~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v   97 (125)
                      ..+.++...+.++.+.+..+.+.++.   ++|.   -....+.+++.+++.+.-+
T Consensus       216 ~~~~dv~~~~~~l~~~~~~~~e~l~~---l~d~---~~~~~s~~~N~~mk~LTvv  264 (318)
T TIGR00383       216 EYLRDIYDHILSLLEMIETYRELLSS---LMDL---YLSLVNNKMNEIMKILTVV  264 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH---HHHHHHHHHHHHHHHHHHH
Confidence            34555555555555554444444322   1111   1222345666666665543

The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.

>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra []

Probab=86.13  E-value=2.9  Score=27.20  Aligned_cols=50  Identities=14%  Similarity=0.304  Sum_probs=39.4

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHhhhhhhh
Q 039203           39 HDNDKAIDGLKERAVFLKRLTGD---IHEEVESHNRLLDRMGNSMDASRGIMS   88 (125)
Q Consensus        39 ~eqD~~Ld~L~~~V~~LK~ia~~---I~~El~~Qn~lLD~l~~~~d~t~~~L~   88 (125)
                      ..-|+..|.|...|..++.--..   |+.-++.|..-|+.++..+++.+.-|+
T Consensus        14 k~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~   66 (75)
T PF05531_consen   14 KAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDILN   66 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            56678899999999888876655   888888888888888887777666554

; GO: 0019028 viral capsid

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=85.82  E-value=12  Score=27.55  Aligned_cols=65  Identities=11%  Similarity=0.079  Sum_probs=40.2

Q ss_pred             HhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCC
Q 039203           39 HDNDKAIDGLKERAVFLKR-LTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSN  103 (125)
Q Consensus        39 ~eqD~~Ld~L~~~V~~LK~-ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~  103 (125)
                      .|-|..=+.|..-+..++. +-.+|+.|=..-......++..+..+..++......++.-+++..+
T Consensus        87 ~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~  152 (177)
T PF07798_consen   87 REIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKW  152 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333444432 3445555555555677888888888888888888888888776443

>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function

Probab=84.80  E-value=10  Score=25.81  Aligned_cols=46  Identities=13%  Similarity=0.250  Sum_probs=39.9

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhh
Q 039203           39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASR   84 (125)
Q Consensus        39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~   84 (125)
                      .|+|..+-.|.......++--..|.+=+..|+...+.|+-.+|+..
T Consensus         7 ~e~e~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~   52 (98)
T PF11166_consen    7 HEHEWRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEIN   52 (98)
T ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHH
Confidence            3788889999999888888888999999999999999888888843

It has a highly conserved sequence.

>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea

Probab=84.65  E-value=3.3  Score=26.54  Aligned_cols=51  Identities=14%  Similarity=0.093  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCC--cceehHHHHHHHHHHHHHHH
Q 039203           66 VESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSN--RRICTLVGSFVVSFFVLYYL  123 (125)
Q Consensus        66 l~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~--~~~~~lI~~lvviflvly~l  123 (125)
                      .++=++-||++++.++.+.+-+.       +-..++-+  -++.|-+++.+++|+++..+
T Consensus        14 ~~~i~~rLd~iEeKvEf~~~Ei~-------Qr~GkkiGRDiGIlYG~v~Glii~~~~~~l   66 (70)
T PF04210_consen   14 FNEIMKRLDEIEEKVEFTNAEIA-------QRAGKKIGRDIGILYGLVIGLIIFIIYIVL   66 (70)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHH-------HHHhHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            33334456666666666655432       22222212  24666555555555544433

This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane

>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=83.25  E-value=3.9  Score=31.70  Aligned_cols=29  Identities=10%  Similarity=0.173  Sum_probs=20.8

Q ss_pred             HHHHhh---hHHHhhhhhhhhHHHHHHHHHHh
Q 039203           72 LLDRMG---NSMDASRGIMSGTMDRFKMVFEK  100 (125)
Q Consensus        72 lLD~l~---~~~d~t~~~L~~t~~rl~~v~~~  100 (125)
                      +|.+|.   +...++..+|..+...+.+-.+.
T Consensus       154 IL~dL~~QRe~L~rar~rL~~td~~lgkS~ki  185 (220)
T KOG1666|consen  154 ILEDLHGQREQLERARERLRETDANLGKSRKI  185 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhchhhhhHHHHH
Confidence            677776   45677778888888877776553

>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.87  E-value=10  Score=24.45  Aligned_cols=50  Identities=10%  Similarity=0.234  Sum_probs=37.1

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhh
Q 039203           39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMS   88 (125)
Q Consensus        39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~   88 (125)
                      .+-++++.+|..++...-..=..+++-|.+|-..+|.+...++...++++
T Consensus         4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~   53 (72)
T COG2900           4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLK   53 (72)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999888877778888888888777766666555544443

>PF15106 TMEM156: TMEM156 protein family

Probab=82.14  E-value=0.89  Score=35.14  Aligned_cols=20  Identities=10%  Similarity=0.291  Sum_probs=15.1

Q ss_pred             eehHHHHHHHHHHHHHHHhC
Q 039203          106 ICTLVGSFVVSFFVLYYLIR  125 (125)
Q Consensus       106 ~~~lI~~lvviflvly~l~k  125 (125)
                      .||+.+++|++|++++++.|
T Consensus       177 TWYvLVllVfiflii~iI~K  196 (226)
T PF15106_consen  177 TWYVLVLLVFIFLIILIIYK  196 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            67777777888888887765

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=80.82  E-value=20  Score=28.49  Aligned_cols=74  Identities=11%  Similarity=0.151  Sum_probs=42.4

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCCc-ceehHHHHHHHH
Q 039203           38 EHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNR-RICTLVGSFVVS  116 (125)
Q Consensus        38 e~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~~-~~~~lI~~lvvi  116 (125)
                      ++|.-+.+..++.-|.-...+--.|.+       -+-+...++....+.+.++.+-....-++.=.| ++|++|+.++++
T Consensus       194 ~ael~qLfndm~~~V~eq~e~Vd~I~~-------~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~iii~viv~  266 (280)
T COG5074         194 MAELTQLFNDMEELVIEQQENVDVIDK-------NVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFIIIIVIVV  266 (280)
T ss_pred             HHHHHHHHHHHHHHHHhhcchHHHHHh-------hHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHHHHHHHHH
Confidence            345555555555555544444444443       344556667777777777777777777776555 466654444443


Q ss_pred             HH
Q 039203          117 FF  118 (125)
Q Consensus       117 fl  118 (125)
                      |+
T Consensus       267 vv  268 (280)
T COG5074         267 VV  268 (280)
T ss_pred             HH
Confidence            33

>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G

Probab=80.07  E-value=7  Score=25.03  Aligned_cols=23  Identities=17%  Similarity=0.287  Sum_probs=12.9

Q ss_pred             HHHHHHHHHHHhhhHHHhhhhhh
Q 039203           65 EVESHNRLLDRMGNSMDASRGIM   87 (125)
Q Consensus        65 El~~Qn~lLD~l~~~~d~t~~~L   87 (125)
                      |.++=.+-||++++.++.|.+-+
T Consensus        13 d~~~i~~rLd~iEeKVEf~~~E~   35 (70)
T TIGR01149        13 EFNEVMKRLDEIEEKVEFVNGEV   35 (70)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445677776666665543

coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	125
2nps_D	82	Syntaxin-6; vesicle fusion, snare complex, early e	1e-11
1sfc_D	87	Protein (SNAP-25B), protein (synaptobrevin 2); mem	5e-05
1gl2_D	65	Syntaxin 8, vesicle transport V-snare protein VTI1	9e-05
1n7s_D	66	SNAP-25A; neuronal snare protein complex, four hel	3e-04

>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Length = 82

 Score = 55.6 bits (134), Expect = 1e-11
 Identities = 12/68 (17%), Positives = 30/68 (44%)

Query: 38  EHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV 97
               D+ ++ +      LK ++  I  E+E    +L+   + +++++  +   M +   V
Sbjct: 14  GRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKV 73

Query: 98  FEKKSNRR 105
               S+RR
Sbjct: 74  SHMTSDRR 81

>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Length = 87

 Score = 38.3 bits (89), Expect = 5e-05
 Identities = 14/78 (17%), Positives = 34/78 (43%), Gaps = 4/78 (5%)

Query: 22 EEGGLKASSSYSSGI--DEHDN--DKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMG 77
          E   +  S  +   +  D  +N  D+ ++ +      L+ +  D+  E+++ NR +DR+ 
Sbjct: 4  EREQMAISGGFIRRVTNDARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIM 63

Query: 78 NSMDASRGIMSGTMDRFK 95
             D+++  +     R  
Sbjct: 64 EKADSNKTRIDEANQRAT 81

>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Length = 65

 Score = 37.1 bits (86), Expect = 9e-05
 Identities = 11/59 (18%), Positives = 26/59 (44%)

Query: 39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV 97
           + D  +D L       K++  +I  E++  N ++D + N ++ +   +     R  +V
Sbjct: 5  QEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLV 63

>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Length = 66

 Score = 35.8 bits (83), Expect = 3e-04
 Identities = 11/58 (18%), Positives = 29/58 (50%)

Query: 38 EHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFK 95
          E++ D+ ++ +      L+ +  D+  E+++ NR +DR+    D+++  +     R  
Sbjct: 5  ENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRAT 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	125
2nps_D	82	Syntaxin-6; vesicle fusion, snare complex, early e	99.78
1sfc_D	87	Protein (SNAP-25B), protein (synaptobrevin 2); mem	99.75
1gl2_D	65	Syntaxin 8, vesicle transport V-snare protein VTI1	99.74
1n7s_D	66	SNAP-25A; neuronal snare protein complex, four hel	99.73
1l4a_D	87	S-SNAP25 fusion protein; snare, snare complex, mem	99.68
3b5n_D	64	Protein transport protein SEC9; snare complex, syn	99.56
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	99.08
1jth_B	77	Syntaxin 1A; coiled-coil, polar layer, endocytosis	98.01
2nps_B	71	Syntaxin 13, vesicle-associated membrane protein 4	97.65
3b5n_B	69	Protein SSO1; snare complex, syntaxin, synaptobrev	97.38
1gl2_B	65	Syntaxin 7; membrane protein, membrane fusion prot	97.33
1sfc_B	83	Protein (syntaxin 1A), protein (synaptobrevin 2);	97.32
1n7s_B	68	Syntaxin 1A; neuronal snare protein complex, four	97.2
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	96.68
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	96.35
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	95.81
1dn1_B	267	Syntaxin 1A, syntaxin binding protein 1; protein-p	95.02
1n7s_C	79	SNAP-25A; neuronal snare protein complex, four hel	90.26
3c98_B	279	Syntaxin-1A; protein complex, alternative splicing	90.19
1nhl_A	54	Synaptosomal-associated protein 23; snare, coiled-	90.09
2xhe_B	279	Syntaxin1; exocytosis, exocytosis complex, snare,	89.03
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	88.86
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	86.59
1gl2_C	65	VTI1B, vesicle transport V-snare protein VTI1-like	83.99
1gmj_A	84	ATPase inhibitor; coiled-coil structure, P depende	82.83
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	81.12

>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}

Probab=99.78  E-value=5.3e-19  Score=115.91  Aligned_cols=71  Identities=17%  Similarity=0.289  Sum_probs=61.6

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHhcCCcc
Q 039203           35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEKKSNRR  105 (125)
Q Consensus        35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~~~~~~  105 (125)
                      +.+.+|||+.||.|+++|.+||++|.+||+||+.||++||+|+++||++..+|+++++|+.++++++++++
T Consensus        11 ~~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~~   81 (82)
T 2nps_D           11 NNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRR   81 (82)
T ss_dssp             -------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence            66778999999999999999999999999999999999999999999999999999999999999887764

>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.75  E-value=4.1e-18  Score=112.88  Aligned_cols=78  Identities=17%  Similarity=0.294  Sum_probs=68.5

Q ss_pred             CCCCCCCCCCCCCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203           21 LEEGGLKASSSYSSGIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK  100 (125)
Q Consensus        21 ~~~~~~~~~~~~~~~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~  100 (125)
                      .|.|+|-...+.  +.+++|||+.||.|+..|++||++|.+|++||+.||++||+++++||++..+|..+++|+++++++
T Consensus         9 ~~s~~yi~~~~~--d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~k   86 (87)
T 1sfc_D            9 AISGGFIRRVTN--DARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGS   86 (87)
T ss_dssp             ---CCCSCCSSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             CCCCchhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence            455667554433  899999999999999999999999999999999999999999999999999999999999999754

>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.74  E-value=4.3e-18  Score=106.96  Aligned_cols=64  Identities=17%  Similarity=0.310  Sum_probs=53.8

Q ss_pred             hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHH
Q 039203           36 IDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFE   99 (125)
Q Consensus        36 ~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~   99 (125)
                      .+++|||+.||.|+++|++||++|.+||+||+.||++||++++.||++..+|+.+++|+.++++
T Consensus         2 ~~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~k   65 (65)
T 1gl2_D            2 SHMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDR   65 (65)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            4678999999999999999999999999999999999999999999999999999999998863

>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B

Probab=99.73  E-value=8e-18  Score=106.00  Aligned_cols=64  Identities=17%  Similarity=0.323  Sum_probs=61.9

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHH
Q 039203           35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVF   98 (125)
Q Consensus        35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~   98 (125)
                      +.+|+|||+.|+.|+++|++||++|.+||+||+.||++||++++.||++..+|+.+++|+++++
T Consensus         2 d~~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ll   65 (66)
T 1n7s_D            2 SARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML   65 (66)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHc
Confidence            4689999999999999999999999999999999999999999999999999999999999875

>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=99.68  E-value=1e-16  Score=106.19  Aligned_cols=65  Identities=15%  Similarity=0.279  Sum_probs=62.7

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHH
Q 039203           35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFE   99 (125)
Q Consensus        35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~   99 (125)
                      +..++|||+.||.|+..|++||++|.+|+.||+.||++||++++.+|++..+|..+++|++++++
T Consensus        22 d~~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~   86 (87)
T 1l4a_D           22 DAREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLK   86 (87)
T ss_dssp             SHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC-
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            77899999999999999999999999999999999999999999999999999999999999875

>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}

Probab=99.56  E-value=1.2e-14  Score=91.14  Aligned_cols=63  Identities=17%  Similarity=0.229  Sum_probs=60.4

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203           35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV   97 (125)
Q Consensus        35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v   97 (125)
                      +.+|.|+|+.|+.|++.+++||++|.+||+||+.||++||.++..+|++..++..+++|++++
T Consensus         2 d~~E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~i   64 (64)
T 3b5n_D            2 SEMELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAGI   64 (64)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            468999999999999999999999999999999999999999999999999999999999863

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=99.08  E-value=1.1e-09  Score=74.93  Aligned_cols=73  Identities=16%  Similarity=0.219  Sum_probs=62.5

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHH--hcCCcceehHH
Q 039203           38 EHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFE--KKSNRRICTLV  110 (125)
Q Consensus        38 e~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~--~~~~~~~~~lI  110 (125)
                      .++-++.+..|.+++..|+++..++...+.+|..++|.++..++++...+..+.+.+.+..+  +++.++.||++
T Consensus        16 i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l   90 (109)
T 3hd7_B           16 IETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMII   90 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehH
Confidence            36677789999999999999999999999999999999999999999999999999998854  33334444433

>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B

Probab=98.01  E-value=6.9e-05  Score=47.68  Aligned_cols=62  Identities=16%  Similarity=0.185  Sum_probs=57.8

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203           39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK  100 (125)
Q Consensus        39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~  100 (125)
                      ++-.+.+..|.+++.-|+.+..++..-|.+|..+||.++..++.+...+..+...+.+..+.
T Consensus         6 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~   67 (77)
T 1jth_B            6 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY   67 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556799999999999999999999999999999999999999999999999999999873

>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=97.65  E-value=0.00048  Score=43.09  Aligned_cols=60  Identities=13%  Similarity=0.221  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203           41 NDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK  100 (125)
Q Consensus        41 qD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~  100 (125)
                      -.+.+..|..++.-|+.+..++..-|.+|..+||.++..++.+...+..+...+.+..+.
T Consensus         4 R~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~   63 (71)
T 2nps_B            4 RETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYY   63 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345689999999999999999999999999999999999999999999999999998764

>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=97.38  E-value=0.0025  Score=39.54  Aligned_cols=61  Identities=11%  Similarity=0.146  Sum_probs=56.4

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHH
Q 039203           39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFE   99 (125)
Q Consensus        39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~   99 (125)
                      ++-.+.+..|.+++.-|+.+..++..-|.+|..+||.++..++.+...+..+.+.+.+..+
T Consensus         6 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~   66 (69)
T 3b5n_B            6 QARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK   66 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455679999999999999999999999999999999999999999999999999988765

>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=97.33  E-value=0.0017  Score=39.90  Aligned_cols=59  Identities=8%  Similarity=0.241  Sum_probs=53.8

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203           39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV   97 (125)
Q Consensus        39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v   97 (125)
                      ++-.+.+..|.+++.-|+.+..++..-|.+|..+||.++..++.+...+..+.+.+.+.
T Consensus         5 ~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA   63 (65)
T 1gl2_B            5 HERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRA   63 (65)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455689999999999999999999999999999999999999999999999988764

>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B

Probab=97.32  E-value=0.0026  Score=40.86  Aligned_cols=64  Identities=16%  Similarity=0.179  Sum_probs=58.7

Q ss_pred             hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203           37 DEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK  100 (125)
Q Consensus        37 le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~  100 (125)
                      ..++-.+.+..|.+++.-|+.+..++..-|.+|..+||.++..++.+...+..+.+.+.+..+.
T Consensus        15 ~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~   78 (83)
T 1sfc_B           15 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY   78 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666799999999999999999999999999999999999999999999999999998764

>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B

Probab=97.20  E-value=0.0028  Score=39.16  Aligned_cols=59  Identities=17%  Similarity=0.199  Sum_probs=54.4

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHH
Q 039203           39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMV   97 (125)
Q Consensus        39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v   97 (125)
                      ++-.+.+..|.+++.-|+.+-.++..=|.+|..+||.++..++.+...+..+.+.+.+.
T Consensus         8 ~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA   66 (68)
T 1n7s_B            8 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKA   66 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556799999999999999999999999999999999999999999999999988775

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=96.68  E-value=0.0011  Score=45.55  Aligned_cols=40  Identities=10%  Similarity=0.097  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhh
Q 039203           44 AIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDAS   83 (125)
Q Consensus        44 ~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t   83 (125)
                      .+..+...|...|.+-..=-+.+-+-.+-||+|.+.-++.
T Consensus        34 ~l~~vq~evdeVk~IM~~NIdkvLeRGEkLd~L~~KTe~L   73 (119)
T 2kog_A           34 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADAL   73 (119)
T ss_dssp             HHHHSSHHHHHHHHHHHHHHHHHHCCCCSSCCCCSCCSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            3444444454444433322233434444566666554443

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=96.35  E-value=0.046  Score=35.57  Aligned_cols=53  Identities=9%  Similarity=0.196  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHH---hhhhhhhhHHHHHHHH
Q 039203           44 AIDGLKERAVFLKRLTG-DIHEEVESHNRLLDRMGNSMD---ASRGIMSGTMDRFKMV   97 (125)
Q Consensus        44 ~Ld~L~~~V~~LK~ia~-~I~~El~~Qn~lLD~l~~~~d---~t~~~L~~t~~rl~~v   97 (125)
                      .+..+.+.|...|.+-. +|..-++ ..+-||+|.+.-+   .......++.+++++-
T Consensus         6 ~l~~vq~ev~evk~iM~~NI~kvL~-RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rk   62 (91)
T 3hd7_A            6 RLQQTQAQVDEVVDIMRVNVDKVLE-RDQKLSELDDRADALQAGASQFETSAAKLKRK   62 (91)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566666666554433 3443333 3334555554444   3334445555555544

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=95.81  E-value=0.077  Score=34.50  Aligned_cols=56  Identities=9%  Similarity=0.123  Sum_probs=34.1

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHH
Q 039203           35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTM   91 (125)
Q Consensus        35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~   91 (125)
                      ..+.+|-|+--+.+.+.+..+-+-+..+. ++.+..+-|..-...|.++..++++.+
T Consensus         8 ~~vq~ev~evk~iM~~NI~kvL~RgekL~-~L~~kt~~L~~~s~~F~~~A~~l~rkm   63 (91)
T 3hd7_A            8 QQTQAQVDEVVDIMRVNVDKVLERDQKLS-ELDDRADALQAGASQFETSAAKLKRKY   63 (91)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666666666666666565554 344444456666667777777776653

>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B

Probab=95.02  E-value=0.012  Score=45.05  Aligned_cols=62  Identities=16%  Similarity=0.185  Sum_probs=49.5

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203           39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK  100 (125)
Q Consensus        39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~  100 (125)
                      ++-.+.+..|..++.-|+.+-.++..-|.+|..+||.++..++.+...+..+...+.+..+-
T Consensus       196 ~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~  257 (267)
T 1dn1_B          196 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY  257 (267)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC---------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45555689999999999999999999999999999999999999999999999999988663

>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A

Probab=90.26  E-value=2.3  Score=26.73  Aligned_cols=43  Identities=16%  Similarity=0.089  Sum_probs=39.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHH
Q 039203           56 KRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVF   98 (125)
Q Consensus        56 K~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~   98 (125)
                      +.+|..+-.+|..|.+-|+.+...++.....|+.+-+.|+.+.
T Consensus        36 e~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~   78 (79)
T 1n7s_C           36 KDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLG   78 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhc
Confidence            4688888999999999999999999999999999999888764

>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}

Probab=90.19  E-value=0.15  Score=37.49  Aligned_cols=62  Identities=16%  Similarity=0.185  Sum_probs=49.3

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203           39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK  100 (125)
Q Consensus        39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~  100 (125)
                      ++-.+.+..|...+..+..+..+|..-+++|...+++++..++.+...+..+...+.+..+.
T Consensus       208 ~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~  269 (279)
T 3c98_B          208 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY  269 (279)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC---------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55566789999999999999999999999999999999999999999999999988887654

>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1

Probab=90.09  E-value=0.64  Score=27.16  Aligned_cols=42  Identities=12%  Similarity=0.086  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHH
Q 039203           54 FLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFK   95 (125)
Q Consensus        54 ~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~   95 (125)
                      --..++..+-.++..|.+-|+.++..++.....|+.+-+.++
T Consensus        11 ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~   52 (54)
T 1nhl_A           11 ESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT   52 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence            346778889999999999999999999999999999887765

>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}

Probab=89.03  E-value=0.084  Score=40.34  Aligned_cols=61  Identities=20%  Similarity=0.291  Sum_probs=45.6

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHH
Q 039203           39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFE   99 (125)
Q Consensus        39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~   99 (125)
                      ++=.+.+..|..++.-|+.+-.++..-|.+|..+||.++..++.+...+..+.+.+.+..+
T Consensus       213 ~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~  273 (279)
T 2xhe_B          213 RDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARH  273 (279)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445569999999999999999999999999999999999999999999999999988765

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=88.86  E-value=2.1  Score=26.90  Aligned_cols=53  Identities=9%  Similarity=0.072  Sum_probs=43.8

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHH
Q 039203           39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTM   91 (125)
Q Consensus        39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~   91 (125)
                      .+.++.++.|..++..+-..=..+++.|-.|...||.|...+.....+++...
T Consensus        10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~   62 (78)
T 3efg_A           10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR   62 (78)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45667899999999999999999999999999999999998888888876544

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=86.59  E-value=5.1  Score=26.37  Aligned_cols=62  Identities=8%  Similarity=0.014  Sum_probs=39.6

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHHHh
Q 039203           39 HDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVFEK  100 (125)
Q Consensus        39 ~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~~~  100 (125)
                      .+-++.+.+|++-...+-.+-.+=++-++.=..-++...+.++.+...|+++.+.=++--++
T Consensus        24 ~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk   85 (109)
T 3hd7_B           24 IKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRK   85 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            34444555666655555555555555555556667788888888888888887665555443

>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=83.99  E-value=5.1  Score=24.03  Aligned_cols=54  Identities=15%  Similarity=0.166  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHH
Q 039203           45 IDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVF   98 (125)
Q Consensus        45 Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~   98 (125)
                      |..-...+.--..+|..|-.+|..|-+-|....+.++.++..|.++.+-|+.+.
T Consensus        11 l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~   64 (65)
T 1gl2_C           11 IERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMS   64 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhc
Confidence            333334444456899999999999999999999999999999999988877653

>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A

Probab=82.83  E-value=1.6  Score=28.10  Aligned_cols=28  Identities=11%  Similarity=0.362  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHHhhhHHHhhhhhhhh
Q 039203           62 IHEEVESHNRLLDRMGNSMDASRGIMSG   89 (125)
Q Consensus        62 I~~El~~Qn~lLD~l~~~~d~t~~~L~~   89 (125)
                      +-+|++.|.+-|++++..+++...+|+.
T Consensus        49 l~~el~~h~~ei~~le~~i~rhk~~i~~   76 (84)
T 1gmj_A           49 KENEISHHAKEIERLQKEIERHKQSIKK   76 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3789999999999998888776555543

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=81.12  E-value=0.21  Score=34.03  Aligned_cols=56  Identities=11%  Similarity=0.161  Sum_probs=32.4

Q ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhhhhhHHHHHHHHH
Q 039203           35 GIDEHDNDKAIDGLKERAVFLKRLTGDIHEEVESHNRLLDRMGNSMDASRGIMSGTMDRFKMVF   98 (125)
Q Consensus        35 ~~le~eqD~~Ld~L~~~V~~LK~ia~~I~~El~~Qn~lLD~l~~~~d~t~~~L~~t~~rl~~v~   98 (125)
                      ..+.+|-|+--+.+.+.+..+-+=+..+        +.|++-.+.+.......++..+++++-+
T Consensus        36 ~~vq~evdeVk~IM~~NIdkvLeRGEkL--------d~L~~KTe~L~~~S~~F~k~A~kl~rkm   91 (119)
T 2kog_A           36 QQTQAQVDEVVDIMRVNVDKVLERDQKL--------SELDDRADALQAGASQFETSAAKLKRKY   91 (119)
T ss_dssp             HHSSHHHHHHHHHHHHHHHHHHCCCCSS--------CCCCSCCSCCCSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcccHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455666666666666666654443333        2355555566666666666666665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00