Citrus Sinensis ID: 039210

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610--
SHRREKNQSDRFPQNLKDQKGKKEMAPSLVANSAPVFCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAIDPTVTPYEPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLGESSTSI
cccccccccccccccHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccEEEEEccccEEEEEEcccccccccHHHHHHHHHcccccccEEEEEcccccccccccHHHHHHHccccEEEEEccccccccccHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHcHHHHHHHHccccEEEEEHHccccccccccccccccccEEcccccccccccHHHHHHHHHHHHHcccEEEccccccccccccccccccccccEEEEEcccccccccccccccccccEEEEEcccccHHHHHHHHHcccEEEEcccccHHHHHHHHHHccccEEEEcccHHHHHHHHHcccccEEEEEEccccccccccccccccccccccccccccccccEEEEcccEEEEEEEccccccccccccccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHcHHHHccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHccccccc
ccccccccccccccccccccccccccccccccccccHHHcccHHHHHHHHHHHHHHHHccccccccccEEEEEEEcccEEEEccccccccccHHHHHHHHHHHHHccccEEEEEEccccccccccHHHHHHHccccEEEEEEEcccccHccHHHHHHHHcccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEcccccccHHEHHccccEEEccccccEcccHHHHHHHHHHHHHccEEEEccccEcccccccEEEcccccccEEEEEEcccccccccEEEEcccccEEEEEcccccHHHHHHHHHcccEEEEcccccHHHHHHHHHHccccEEEEEccHHHHHHHHHcccccEEEEEEcHHHccccccccccccccHHHHHHHHcccccEEEEccccEEEEEEccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccEEcccHHHHHHHHHHcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHcccccEEEEccccccEEcccccccHHHHHHHHHHHHHHHHHccccccc
shrreknqsdrfpqnlkdqkgkkemapslvansapvfckfsraEDAAYIRRAADiadksagftsphpnfgcliatstgkvagegylyaqgtkpaeVQAVEAggsfcrgataylnmepgdchgdhTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCllvnaplihratsrvpfsvfKYAMTLDVILPGVLSWMLTGKIAASSGhaawissktsrdrvfdlrgrsdavvvggntvrrdnprltarhggghtpmRIVLTQtlnlpeeanlwdvsdaptivvtQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFvapkiiggknaptpvselGMVEMSQALDLIDICYEqvgpdmlisgflqpipdlmpvipsedetfaidptvtpyepsiiyfyktwdpygafsnfsphpiqmpdvngdvtWSSVEHYYQAhkftgvndpaAQDFVEKIKTAKSPEEAARLGRsmqrqhpdwvrsdwESVKIDIMYRALKCkfsiyphlnsmLLSTGgsvlveasphdlfwgggregeGLNYLGRLLMQLRSEflgesstsi
shrreknqsdrfpqnlkdqkgkkemapslvansapVFCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASsghaawissktsrdrvfdlrgrsdavvvggntvrrdnprltarhggghtpmRIVLTQTLNLPEeanlwdvsdaptIVVTQRGARRKFQKylasrgvevvefdilnSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAIDPTVTPYEPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAkspeeaarlgrsmqrqhpdwvrsdwESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLrseflgesstsi
SHRREKNQSDRFPQNLKDQKGKKEMAPSLVANSAPVFCKFSraedaayirraadiadKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAIDPTVTPYEPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLGESSTSI
********************************SAPVFCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVR*******ARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAIDPTVTPYEPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDF*************************DWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLR***********
********************************************DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIPD****************TVTPYEPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKI*********************DWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLGE*****
************PQNL**********PSLVANSAPVFCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAIDPTVTPYEPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKS******************VRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEF********
****************************************SRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAIDPTVTPYEPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLGE*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SHRREKNQSDRFPQNLKDQKGKKEMAPSLVANSAPVFCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAIDPTVTPYEPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLGESSTSI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query612 2.2.26 [Sep-21-2011]
Q55158368 Riboflavin biosynthesis p N/A no 0.576 0.959 0.395 7e-72
P50853376 Riboflavin biosynthesis p yes no 0.576 0.938 0.315 5e-43
O66534356 Riboflavin biosynthesis p yes no 0.566 0.974 0.305 1e-41
P17618361 Riboflavin biosynthesis p yes no 0.563 0.955 0.279 7e-36
P70814371 Riboflavin biosynthesis p yes no 0.570 0.940 0.271 7e-34
O84735375 Riboflavin biosynthesis p yes no 0.549 0.896 0.282 2e-31
Q9Z735376 Riboflavin biosynthesis p yes no 0.511 0.832 0.281 6e-30
Q9PLJ6371 Riboflavin biosynthesis p yes no 0.566 0.935 0.265 6e-29
Q89AB0372 Riboflavin biosynthesis p yes no 0.521 0.857 0.252 2e-27
P71677339 Riboflavin biosynthesis p yes no 0.496 0.896 0.293 8e-27
>sp|Q55158|RIBD_SYNY3 Riboflavin biosynthesis protein RibD OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=ribD PE=3 SV=1 Back     alignment and function desciption
 Score =  272 bits (695), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 149/377 (39%), Positives = 218/377 (57%), Gaps = 24/377 (6%)

Query: 45  DAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGS 104
           D  ++RR   +A  + G T+P+P  G +I     ++ G+G+    G    E+ A+   G 
Sbjct: 4   DQTHMRRCLTLAKTAIGKTAPNPLVGSVIVQGD-EIVGQGFHPQAGQPHGEIFALWEAGD 62

Query: 105 FCRGATAYLNMEPGDCHGDHT-AVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQ 163
             +GAT Y+N+EP +  G       A++QAGI +VVVG+ +P   + G+ +  LR  G++
Sbjct: 63  RAKGATLYVNLEPCNHQGRTPPCTEAIIQAGIAKVVVGMVDPNPLVAGKGISRLRQAGIE 122

Query: 164 VHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTG 223
           V V  E+          ++C  +N     R   + PF +FKYAMTLD            G
Sbjct: 123 VKVGVEE----------EACQRLNEAFCFRIKHQRPFGIFKYAMTLD------------G 160

Query: 224 KIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVL 283
           KIA +  H++W++S ++R  V  LR +  AV++GGNTVRRDNP LT    G   P+R+VL
Sbjct: 161 KIATAQAHSSWVTSSSARHWVHQLRSQCQAVIIGGNTVRRDNPLLTNHGVGEVNPLRVVL 220

Query: 284 TQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHD 343
           +++L+LP EA LWD   A T+V+T++   R    +L    VE +  + L    VME  + 
Sbjct: 221 SRSLDLPIEAQLWDQDVAKTLVITEKTCDRNTLSHLEKLEVETLVLEQLTPLAVMEELYQ 280

Query: 344 RGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLI 403
           R  L +LWECGG LAA AI+ G + KV AF+APKIIGG  APTPV ELG  +M+QAL+L 
Sbjct: 281 RNCLQVLWECGGILAAEAIAMGTVQKVHAFLAPKIIGGVAAPTPVGELGFQQMTQALNLT 340

Query: 404 DICYEQVGPDMLISGFL 420
           D+  + +GPD L +G+L
Sbjct: 341 DLHCQAIGPDWLFTGYL 357
Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'-phosphate.
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 9EC: 3
>sp|P50853|RIBD_ACTPL Riboflavin biosynthesis protein RibD OS=Actinobacillus pleuropneumoniae GN=ribD PE=3 SV=2 Back     alignment and function description
>sp|O66534|RIBD_AQUAE Riboflavin biosynthesis protein RibD OS=Aquifex aeolicus (strain VF5) GN=ribD PE=3 SV=1 Back     alignment and function description
>sp|P17618|RIBD_BACSU Riboflavin biosynthesis protein RibD OS=Bacillus subtilis (strain 168) GN=ribD PE=1 SV=1 Back     alignment and function description
>sp|P70814|RIBD_BACAM Riboflavin biosynthesis protein RibD OS=Bacillus amyloliquefaciens GN=ribD PE=3 SV=1 Back     alignment and function description
>sp|O84735|RIBD_CHLTR Riboflavin biosynthesis protein RibD OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=ribD PE=3 SV=1 Back     alignment and function description
>sp|Q9Z735|RIBD_CHLPN Riboflavin biosynthesis protein RibD OS=Chlamydia pneumoniae GN=ribD PE=3 SV=1 Back     alignment and function description
>sp|Q9PLJ6|RIBD_CHLMU Riboflavin biosynthesis protein RibD OS=Chlamydia muridarum (strain MoPn / Nigg) GN=ribD PE=3 SV=2 Back     alignment and function description
>sp|Q89AB0|RIBD_BUCBP Riboflavin biosynthesis protein RibD OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=ribD PE=3 SV=1 Back     alignment and function description
>sp|P71677|RIBD_MYCTU Riboflavin biosynthesis protein RibD OS=Mycobacterium tuberculosis GN=ribD PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query612
359476610586 PREDICTED: riboflavin biosynthesis prote 0.923 0.964 0.811 0.0
147797438587 hypothetical protein VITISV_041263 [Viti 0.923 0.962 0.810 0.0
255547562600 riboflavin-specific deaminase, putative 0.931 0.95 0.791 0.0
356566953594 PREDICTED: riboflavin biosynthesis prote 0.918 0.946 0.781 0.0
224144951592 predicted protein [Populus trichocarpa] 0.915 0.945 0.792 0.0
334185794596 cytidine/deoxycytidylate deaminase-like 0.931 0.956 0.757 0.0
356530018594 PREDICTED: riboflavin biosynthesis prote 0.918 0.946 0.756 0.0
297815908579 predicted protein [Arabidopsis lyrata su 0.918 0.970 0.742 0.0
449442795605 PREDICTED: riboflavin biosynthesis prote 0.905 0.915 0.753 0.0
15232791599 cytidine/deoxycytidylate deaminase-like 0.929 0.949 0.719 0.0
>gi|359476610|ref|XP_003631864.1| PREDICTED: riboflavin biosynthesis protein RibD-like [Vitis vinifera] gi|297735254|emb|CBI17616.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  989 bits (2556), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/585 (81%), Positives = 522/585 (89%), Gaps = 20/585 (3%)

Query: 34  APVFCKFS------RAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLY 87
           +P+ CK +       A D+ ++RRAA+IADKSAGFTSPHPNFGC+IAT+ GKV GEGYLY
Sbjct: 7   SPIICKATTNNNHPHALDSFHVRRAAEIADKSAGFTSPHPNFGCVIATA-GKVVGEGYLY 65

Query: 88  AQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHGDHTAVSALVQAGITRVVVGIRNPLQ 147
           AQGTKPAEVQAVEA G  CRGATAYLNMEPGDCHGD TAVSALV+AGITR VVGIR+PLQ
Sbjct: 66  AQGTKPAEVQAVEAAGELCRGATAYLNMEPGDCHGDRTAVSALVKAGITRAVVGIRHPLQ 125

Query: 148 HLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAM 207
           HLR  A+RA+RS+GLQV VLGEDL+SKI+EEA KSCL+VNAPLI+RA SRVPFSV KYAM
Sbjct: 126 HLRSHALRAMRSEGLQVDVLGEDLKSKIVEEALKSCLIVNAPLIYRAASRVPFSVLKYAM 185

Query: 208 TLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPR 267
           TLD            GKIAASSGHA+WISSK SR RVF+LRGRSDA+VVGGNTVR+DNPR
Sbjct: 186 TLD------------GKIAASSGHASWISSKESRYRVFELRGRSDAIVVGGNTVRKDNPR 233

Query: 268 LTARHGGGHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVV 327
           LTARHGGGH P+RIV+++TLNLPE ANLWDVS  PTIVVTQRGAR+ FQK+LAS+GVEVV
Sbjct: 234 LTARHGGGHVPIRIVMSRTLNLPEVANLWDVSSVPTIVVTQRGARKSFQKFLASKGVEVV 293

Query: 328 EFDILNSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTP 387
           EFDILN+RDVMEYF+DRGYLSILWECGGTLAASAISSG+IHKVFAFVAPKIIGGKNAPTP
Sbjct: 294 EFDILNTRDVMEYFYDRGYLSILWECGGTLAASAISSGIIHKVFAFVAPKIIGGKNAPTP 353

Query: 388 VSELGMVEMSQALDLIDICYEQVGPDMLISGFLQPIPDLMPVIPSEDETFAIDPTVTPYE 447
           V ELGMVEM+QALDLID  YEQ+GPDMLISGFLQP PD  PVIPS DET+AIDP+VTPYE
Sbjct: 354 VGELGMVEMTQALDLIDFSYEQIGPDMLISGFLQPFPDPTPVIPSVDETYAIDPSVTPYE 413

Query: 448 PSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGDV-TWSSVEHYYQAHKFTGVNDPAAQDFV 506
             II+FYKTWD YGAFSNFSPHPIQMPD NGD  TWSSVEHYYQAHKF GVNDP  +DFV
Sbjct: 414 SIIIFFYKTWDLYGAFSNFSPHPIQMPDENGDYQTWSSVEHYYQAHKFVGVNDPVPRDFV 473

Query: 507 EKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLST 566
           E IK+AKSPEEAAR+GR++QRQHPD VRSDW++VKID+MYRALKCKFSIYPHLNSML+ST
Sbjct: 474 EDIKSAKSPEEAARMGRTIQRQHPDLVRSDWDAVKIDVMYRALKCKFSIYPHLNSMLVST 533

Query: 567 GGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLGESSTS 611
            GSVLVEASPHDLFWGGGR+GEGLNYLGRLLMQLRSEFLGES TS
Sbjct: 534 AGSVLVEASPHDLFWGGGRDGEGLNYLGRLLMQLRSEFLGESLTS 578

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147797438|emb|CAN60371.1| hypothetical protein VITISV_041263 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255547562|ref|XP_002514838.1| riboflavin-specific deaminase, putative [Ricinus communis] gi|223545889|gb|EEF47392.1| riboflavin-specific deaminase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356566953|ref|XP_003551689.1| PREDICTED: riboflavin biosynthesis protein RibD-like [Glycine max] Back     alignment and taxonomy information
>gi|224144951|ref|XP_002325472.1| predicted protein [Populus trichocarpa] gi|222862347|gb|EEE99853.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|334185794|ref|NP_001190026.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis thaliana] gi|332644755|gb|AEE78276.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356530018|ref|XP_003533582.1| PREDICTED: riboflavin biosynthesis protein RibD-like [Glycine max] Back     alignment and taxonomy information
>gi|297815908|ref|XP_002875837.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297321675|gb|EFH52096.1| predicted protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449442795|ref|XP_004139166.1| PREDICTED: riboflavin biosynthesis protein RibD-like [Cucumis sativus] gi|449485406|ref|XP_004157158.1| PREDICTED: riboflavin biosynthesis protein RibD-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15232791|ref|NP_190323.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis thaliana] gi|5541706|emb|CAB51211.1| putative protein [Arabidopsis thaliana] gi|332644754|gb|AEE78275.1| cytidine/deoxycytidylate deaminase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query612
TAIR|locus:2099555599 PHS1 "AT3G47390" [Arabidopsis 0.882 0.901 0.75 6.9e-221
TIGR_CMR|GSU_1688369 GSU_1688 "riboflavin biosynthe 0.369 0.612 0.323 1.2e-47
TIGR_CMR|CHY_1475361 CHY_1475 "riboflavin biosynthe 0.333 0.565 0.364 4.4e-46
TIGR_CMR|DET_1190365 DET_1190 "riboflavin biosynthe 0.544 0.912 0.318 1.4e-36
TIGR_CMR|SPO_1754364 SPO_1754 "riboflavin biosynthe 0.310 0.521 0.303 6.4e-29
UNIPROTKB|P30176160 ybiA "conserved protein" [Esch 0.233 0.893 0.433 1.8e-25
TIGR_CMR|SO_3469381 SO_3469 "riboflavin biosynthes 0.246 0.396 0.337 5.5e-25
UNIPROTKB|Q721R6146 LMOf2365_0919 "Putative unchar 0.230 0.965 0.393 2.9e-24
UNIPROTKB|P71677339 ribD "Riboflavin biosynthesis 0.225 0.407 0.287 1.3e-23
TIGR_CMR|BA_4331370 BA_4331 "riboflavin biosynthes 0.359 0.594 0.308 1.3e-20
TAIR|locus:2099555 PHS1 "AT3G47390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2133 (755.9 bits), Expect = 6.9e-221, P = 6.9e-221
 Identities = 420/560 (75%), Positives = 472/560 (84%)

Query:    59 SAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPG 118
             SAG TSPHPNFGC+IATS+GKVAGEGYLYAQGTKPAE  AVEA G F RGATAYLNMEPG
Sbjct:    46 SAGLTSPHPNFGCVIATSSGKVAGEGYLYAQGTKPAEALAVEAAGEFSRGATAYLNMEPG 105

Query:   119 DCHGDHTAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEE 178
             DCHGDHTAVSALVQAGI RVVVGIR+PLQHLRG A+R LRS G++V+VLGED +SK++E+
Sbjct:   106 DCHGDHTAVSALVQAGIERVVVGIRHPLQHLRGSAIRELRSHGIEVNVLGEDFESKVLED 165

Query:   179 ARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSK 238
             ARKSCLLVNAPLIHRA SRVPFSV KYAMTLD            GKIAASSGHAAWISSK
Sbjct:   166 ARKSCLLVNAPLIHRACSRVPFSVLKYAMTLD------------GKIAASSGHAAWISSK 213

Query:   239 TSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDV 298
              SR RVF+LRG SDAV+VGGNTVR+D+PRLTARHG GHTP RIV+TQ+L+LPE+ANLWDV
Sbjct:   214 LSRTRVFELRGGSDAVIVGGNTVRQDDPRLTARHGQGHTPTRIVMTQSLDLPEKANLWDV 273

Query:   299 SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGYLSILWECGGTLA 358
             S+  TIVVTQRGAR+ FQK LAS+GVEVVEFD+LN R+VMEYFH RGYLSILWECGGTLA
Sbjct:   274 SEVSTIVVTQRGARKSFQKLLASKGVEVVEFDMLNPREVMEYFHLRGYLSILWECGGTLA 333

Query:   359 ASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISG 418
             ASAISS +IHKV AFVAPKIIGG  AP+PV +LGMVEM+QAL+LID+CYEQVGPDML+SG
Sbjct:   334 ASAISSSVIHKVVAFVAPKIIGGSKAPSPVGDLGMVEMTQALNLIDVCYEQVGPDMLVSG 393

Query:   419 FLQPIPDLMPVIPSEDETFAIDPTVTPYEPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNG 478
             FLQPIPDL+PVIPSED T  IDP+V P+EPSII+FYKTWD YG + N +        V  
Sbjct:   394 FLQPIPDLLPVIPSEDATVEIDPSVDPFEPSIIFFYKTWDLYGMW-NITIRYHTTVHVKW 452

Query:   479 DVTWSS-----VEH--YYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAARLGRSMQRQHPD 531
              +  S      + H    +A+KF GV +P A D VEKI+TA+SPEEAA +GRS  RQ P+
Sbjct:   453 YLALSKKHNLLILHPKTLKANKFVGVENPKAYDCVEKIRTARSPEEAALIGRSTLRQKPE 512

Query:   532 WVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEASPHDLFWGGGREGEGLN 591
              VR+DWE VKI++MY+ALKCKFS YPHL SMLLST G+VLVEASPHDLFWGGGREGEGLN
Sbjct:   513 LVRNDWEDVKIEVMYKALKCKFSTYPHLKSMLLSTIGTVLVEASPHDLFWGGGREGEGLN 572

Query:   592 YLGRLLMQLRSEFLGESSTS 611
             YLGRLLMQLRSE+LGESS S
Sbjct:   573 YLGRLLMQLRSEYLGESSVS 592
GO:0008270 "zinc ion binding" evidence=ISS
GO:0009231 "riboflavin biosynthetic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016787 "hydrolase activity" evidence=ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0008703 "5-amino-6-(5-phosphoribosylamino)uracil reductase activity" evidence=IDA;NAS
GO:0009644 "response to high light intensity" evidence=IMP
GO:0009658 "chloroplast organization" evidence=IMP
GO:0046443 "FAD metabolic process" evidence=IMP
TIGR_CMR|GSU_1688 GSU_1688 "riboflavin biosynthesis protein RibD" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_1475 CHY_1475 "riboflavin biosynthesis protein RibD" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1190 DET_1190 "riboflavin biosynthesis protein RibD" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_1754 SPO_1754 "riboflavin biosynthesis protein RibD" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|P30176 ybiA "conserved protein" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|SO_3469 SO_3469 "riboflavin biosynthesis protein RibD" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q721R6 LMOf2365_0919 "Putative uncharacterized protein" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] Back     alignment and assigned GO terms
UNIPROTKB|P71677 ribD "Riboflavin biosynthesis protein RibD" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4331 BA_4331 "riboflavin biosynthesis protein RibD" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.10.691
3rd Layer3.5.4LOW CONFIDENCE prediction!
3rd Layer3.5.4.26LOW CONFIDENCE prediction!
3rd Layer1.1.1.1930.737

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query612
TIGR00326344 TIGR00326, eubact_ribD, riboflavin biosynthesis pr 7e-74
pfam08719146 pfam08719, DUF1768, Domain of unknown function (DU 2e-69
TIGR02464153 TIGR02464, ribofla_fusion, conserved hypothetical 2e-59
TIGR00227216 TIGR00227, ribD_Cterm, riboflavin-specific deamina 9e-56
COG1985218 COG1985, RibD, Pyrimidine reductase, riboflavin bi 6e-52
COG3236162 COG3236, COG3236, Uncharacterized protein conserve 1e-46
PRK05625217 PRK05625, PRK05625, 5-amino-6-(5-phosphoribosylami 6e-41
PLN02807380 PLN02807, PLN02807, diaminohydroxyphosphoribosylam 4e-39
pfam01872201 pfam01872, RibD_C, RibD C-terminal domain 9e-38
cd01284115 cd01284, Riboflavin_deaminase-reductase, Riboflavi 2e-36
PRK10786367 PRK10786, ribD, bifunctional diaminohydroxyphospho 2e-32
TIGR01508210 TIGR01508, rib_reduct_arch, 2, 5-diamino-6-hydroxy 5e-29
PRK14719360 PRK14719, PRK14719, bifunctional RNAse/5-amino-6-( 2e-22
COG0117146 COG0117, RibD, Pyrimidine deaminase [Coenzyme meta 6e-20
PRK14059251 PRK14059, PRK14059, hypothetical protein; Provisio 2e-11
pfam00383104 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycyti 1e-10
cd01285109 cd01285, nucleoside_deaminase, Nucleoside deaminas 3e-04
COG0590152 COG0590, CumB, Cytosine/adenosine deaminases [Nucl 0.001
>gnl|CDD|232920 TIGR00326, eubact_ribD, riboflavin biosynthesis protein RibD Back     alignment and domain information 
 Score =  240 bits (613), Expect = 7e-74
 Identities = 123/369 (33%), Positives = 191/369 (51%), Gaps = 29/369 (7%)

Query: 49  IRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRG 108
           + RA D+A K  G T P+P  GC+I    G++ GEG     G   AEV A+   G   +G
Sbjct: 1   MNRALDLAKKGQGTTHPNPLVGCVI-VKNGEIVGEGAHQKAGEPHAEVHALRQAGENAKG 59

Query: 109 ATAYLNMEPGDCHGDHTAVS-ALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVL 167
           ATAY+ +EP    G     + A+++AGI +VVV +++P   + G+    L+  G++V   
Sbjct: 60  ATAYVTLEPCSHQGRTPPCAEAIIEAGIKKVVVSMQDPNPLVAGRGAERLKQAGIEVTFG 119

Query: 168 GEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAA 227
               +++ +          N   + R  + +P+   K A +LD            GKIA 
Sbjct: 120 ILKEEAERL----------NKGFLKRMRTGLPYVQLKLAASLD------------GKIAT 157

Query: 228 SSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTAR-HGGGHTPMRIVLTQT 286
           +SG + WI+S+ +R     LR +SDA++VGG TV+ DNP LTAR       P+R+VL   
Sbjct: 158 ASGESKWITSEAARTDAQQLRAQSDAILVGGGTVKADNPALTARLDEATEQPLRVVLDTQ 217

Query: 287 LNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNSRDVMEYFHDRGY 346
           L +PE A L     APT + T    ++K    L +  V +   + +  R+VM     RG 
Sbjct: 218 LRIPEFAKLIP-QIAPTWIFTTARDKKKR---LEAFEVNIFPLEKVTIREVMTQLGKRGI 273

Query: 347 LSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDIC 406
            S+L E G  L  S +  GL+ ++  ++APK++GG +AP   SE G  +M+ AL+   + 
Sbjct: 274 NSVLVEGGPNLLGSFLDEGLVDELIIYIAPKLLGGTHAPGLCSEPGFQKMADALNFKFLE 333

Query: 407 YEQVGPDML 415
             Q+GPD+L
Sbjct: 334 INQIGPDIL 342

This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model [Biosynthesis of cofactors, prosthetic groups, and carriers, Riboflavin, FMN, and FAD]. Length = 344
>gnl|CDD|219987 pfam08719, DUF1768, Domain of unknown function (DUF1768) Back     alignment and domain information
>gnl|CDD|233876 TIGR02464, ribofla_fusion, conserved hypothetical protein, ribA/ribD-fused Back     alignment and domain information
>gnl|CDD|129330 TIGR00227, ribD_Cterm, riboflavin-specific deaminase C-terminal domain Back     alignment and domain information
>gnl|CDD|224896 COG1985, RibD, Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|225776 COG3236, COG3236, Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>gnl|CDD|180169 PRK05625, PRK05625, 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated Back     alignment and domain information
>gnl|CDD|215433 PLN02807, PLN02807, diaminohydroxyphosphoribosylaminopyrimidine deaminase Back     alignment and domain information
>gnl|CDD|216753 pfam01872, RibD_C, RibD C-terminal domain Back     alignment and domain information
>gnl|CDD|238611 cd01284, Riboflavin_deaminase-reductase, Riboflavin-specific deaminase Back     alignment and domain information
>gnl|CDD|182729 PRK10786, ribD, bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information
>gnl|CDD|130572 TIGR01508, rib_reduct_arch, 2, 5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal Back     alignment and domain information
>gnl|CDD|237801 PRK14719, PRK14719, bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information
>gnl|CDD|223195 COG0117, RibD, Pyrimidine deaminase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|184482 PRK14059, PRK14059, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|215887 pfam00383, dCMP_cyt_deam_1, Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>gnl|CDD|238612 cd01285, nucleoside_deaminase, Nucleoside deaminases include adenosine, guanine and cytosine deaminases Back     alignment and domain information
>gnl|CDD|223663 COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 612
PLN02807380 diaminohydroxyphosphoribosylaminopyrimidine deamin 100.0
PRK10786367 ribD bifunctional diaminohydroxyphosphoribosylamin 100.0
TIGR00326344 eubact_ribD riboflavin biosynthesis protein RibD. 100.0
PRK14719360 bifunctional RNAse/5-amino-6-(5-phosphoribosylamin 100.0
COG3236162 Uncharacterized protein conserved in bacteria [Fun 100.0
COG0117146 RibD Pyrimidine deaminase [Coenzyme metabolism] 100.0
TIGR02464153 ribofla_fusion conserved hypothetical protein, rib 100.0
COG1985218 RibD Pyrimidine reductase, riboflavin biosynthesis 100.0
PF08719157 DUF1768: Domain of unknown function (DUF1768); Int 100.0
TIGR01508210 rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phospho 100.0
PRK05625217 5-amino-6-(5-phosphoribosylamino)uracil reductase; 100.0
TIGR00227216 ribD_Cterm riboflavin-specific deaminase C-termina 100.0
PRK14059251 hypothetical protein; Provisional 100.0
PF01872200 RibD_C: RibD C-terminal domain; InterPro: IPR00273 100.0
cd01284115 Riboflavin_deaminase-reductase Riboflavin-specific 99.97
PRK10860172 tRNA-specific adenosine deaminase; Provisional 99.97
PHA02573148 30.3 hypothetical protein; Provisional 99.95
TIGR02571151 ComEB ComE operon protein 2. This protein is found 99.95
COG0590152 CumB Cytosine/adenosine deaminases [Nucleotide tra 99.94
PHA02588168 cd deoxycytidylate deaminase; Provisional 99.94
cd01286131 deoxycytidylate_deaminase Deoxycytidylate deaminas 99.9
COG2131164 ComEB Deoxycytidylate deaminase [Nucleotide transp 99.89
cd01285109 nucleoside_deaminase Nucleoside deaminases include 99.88
PF00383102 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deam 99.85
cd0078696 cytidine_deaminase-like Cytidine and deoxycytidyla 99.84
KOG1018169 consensus Cytosine deaminase FCY1 and related enzy 99.82
KOG3127230 consensus Deoxycytidylate deaminase [Nucleotide tr 99.81
cd00209158 DHFR Dihydrofolate reductase (DHFR). Reduces 7,8-d 99.59
COG0262167 FolA Dihydrofolate reductase [Coenzyme metabolism] 99.54
PF08010146 Phage_30_3: Bacteriophage protein GP30.3; InterPro 99.51
cd01283112 cytidine_deaminase Cytidine deaminase zinc-binding 99.34
PTZ00164 514 bifunctional dihydrofolate reductase-thymidylate s 98.96
PRK00478 505 scpA segregation and condensation protein A/unknow 98.94
PRK10769159 folA dihydrofolate reductase; Provisional 98.61
PF14439136 Bd3614-deam: Bd3614-like deaminase 98.34
PF00186161 DHFR_1: Dihydrofolate reductase; InterPro: IPR0017 98.31
TIGR01354127 cyt_deam_tetra cytidine deaminase, homotetrameric. 98.15
KOG2771344 consensus Subunit of tRNA-specific adenosine-34 de 98.13
KOG1324190 consensus Dihydrofolate reductase [Coenzyme transp 97.5
PRK06848139 hypothetical protein; Validated 97.41
PRK12411132 cytidine deaminase; Provisional 96.7
TIGR01355283 cyt_deam_dimer cytidine deaminase, homodimeric. Th 96.63
PRK05578131 cytidine deaminase; Validated 96.61
PRK09027295 cytidine deaminase; Provisional 96.06
COG0295134 Cdd Cytidine deaminase [Nucleotide transport and m 96.03
PLN02402303 cytidine deaminase 95.94
PRK08298136 cytidine deaminase; Validated 95.92
KOG0833173 consensus Cytidine deaminase [Nucleotide transport 95.54
PLN02182339 cytidine deaminase 94.71
PF08210188 APOBEC_N: APOBEC-like N-terminal domain; InterPro: 94.7
PRK09027295 cytidine deaminase; Provisional 93.77
PF14437146 MafB19-deam: MafB19-like deaminase 92.15
PLN02402303 cytidine deaminase 87.17
TIGR01355283 cyt_deam_dimer cytidine deaminase, homodimeric. Th 84.51
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase Back     alignment and domain information 
Probab=100.00  E-value=1.6e-77  Score=638.80  Aligned_cols=363  Identities=27%  Similarity=0.465  Sum_probs=327.6

Q ss_pred             hhhcCCCCCCCccccCCCcccccCCcHHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCCCCChHHH
Q 039210           17 KDQKGKKEMAPSLVANSAPVFCKFSRAEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEV   96 (612)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~~~~HAE~   96 (612)
                      ..-+..++|...++.+.++.      ++|++||++|+++|+++.+.++|||+|||||| +||+||++|||...+.+|||+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~------~~d~~~M~~Al~lA~~~~~~~~~np~VGaViV-~~g~Ii~~g~n~~~g~~HAEi   82 (380)
T PLN02807         10 AESRRFGRRTSVRCSARAAG------DDDSFYMRRCVELARKAIGCTSPNPMVGCVIV-KDGRIVGEGFHPKAGQPHAEV   82 (380)
T ss_pred             hhccccCCcceeEEecCCCC------chHHHHHHHHHHHHHhhcccCCCCCCEEEEEE-ECCEEEEEEeCCCCCCcCHHH
Confidence            34567888999999988853      67899999999999999999999999999999 789999999999999999999


Q ss_pred             HHHHHccCCCCCcEEEEcCCCCCCCCch-hHHHHHHHhCCCEEEEEeeCCCchhhhHHHHHHHhCCcEEEEcccchhhHH
Q 039210           97 QAVEAGGSFCRGATAYLNMEPGDCHGDH-TAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKI  175 (612)
Q Consensus        97 ~Ai~~a~~~~~g~tlYvTlEPC~~~g~~-~C~~ai~~agI~rVv~~~~dp~~~~~g~g~~~l~~~gi~V~~~~~~~~~~~  175 (612)
                      +||++|+..++|||||||||||+||||| ||+++|+++||+|||||..||++.+.|+|+++|+++||+|+.++++     
T Consensus        83 ~Ai~~a~~~~~g~tlyvTLEPC~h~Gktp~C~~aii~agI~rVv~g~~dp~~~~~g~g~~~l~~~gi~V~~g~~~-----  157 (380)
T PLN02807         83 FALRDAGDLAENATAYVSLEPCNHYGRTPPCTEALIKAKVKRVVVGMVDPNPIVASKGIERLRDAGIEVTVGVEE-----  157 (380)
T ss_pred             HHHHHhhhhcCCcEEEEEcCCCcCCCCChHHHHHHHHhCCCEEEEEecCCCccccchHHHHHHhCCCEEEeCcCH-----
Confidence            9999999999999999999999999999 5999999999999999999999999999999999999999887644     


Q ss_pred             HHHHHHhhhhcccccccccccCccceeeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEE
Q 039210          176 IEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVV  255 (612)
Q Consensus       176 l~~~~~e~~~l~~~f~~~~~~~rP~Vi~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~Dail  255 (612)
                           +||.+||+.||++..++||||++|+|+|||            |+|+..+|.+.|    .++.++|++|+++||||
T Consensus       158 -----~e~~~l~~~f~~~~~~~rP~V~lK~A~SlD------------Gkia~~~g~s~~----~s~~~vh~lRa~~DAIl  216 (380)
T PLN02807        158 -----ELCRKLNEAFIHRMLTGKPFVTLRYSMSMN------------GCLLNQIGEGAD----DAGGYYSQLLQEYDAVI  216 (380)
T ss_pred             -----HHHHHHHHHHHHHHhhccccEEEEEEEcCC------------CCeeCCCCCChh----hhhHHHHHHHhhCCEEE
Confidence                 899999999999999999999999999999            999999998875    46678999999999999


Q ss_pred             eccceEeccCCCcccCCCCCCCCeEEEEcCCCCCCCCCccccc-CCCCEEEEEcCCcchHHHHHHHhCCcEEEEecCCCH
Q 039210          256 VGGNTVRRDNPRLTARHGGGHTPMRIVLTQTLNLPEEANLWDV-SDAPTIVVTQRGARRKFQKYLASRGVEVVEFDILNS  334 (612)
Q Consensus       256 vG~~T~~~d~p~L~~r~~~~~~P~~vVvd~~~~l~~~~~l~~~-~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~dl  334 (612)
                      +| +|++.|||.|++|.++.++|+|||+|+++++|.+.++|+. ...|+||+++....  ..+.|+..|++++....+|+
T Consensus       217 VG-~Tv~~DnP~Lt~R~~~~~~PiRVVld~~l~~p~~~~i~~~~~~~~~iv~t~~~~~--~~~~l~~~gv~vv~~~~~dl  293 (380)
T PLN02807        217 LS-SALADADPLPLSQEAGAKQPLRIIIARSESSPLQIPSLREESAAKVLVLADKESS--AEPVLRRKGVEVVVLNQINL  293 (380)
T ss_pred             Ec-CEeeccCCCCccCCCCCCCCEEEEEcCCCCCCCcceecccCCCCCEEEEECCchh--hHHHHHhCCeEEEECCCCCH
Confidence            99 9999999999999876689999999999999999999963 45689999866422  34568889999886666899


Q ss_pred             HHHHHHHHHcCCCeEEEee------cHHHHHHHHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEE
Q 039210          335 RDVMEYFHDRGYLSILWEC------GGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYE  408 (612)
Q Consensus       335 ~~~l~~L~~~g~~~IlveG------G~~L~~sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~  408 (612)
                      .++++.|+++|+++|||||      |++|+++||+++||||+++|++|+++|+...++++     ..+.+..+|++++++
T Consensus       294 ~~iL~~L~~~Gi~svLVEGG~~~~~G~~L~~sfl~~~LvDei~~yiAP~ilG~~~~~~~~-----~~~~~~~~l~~~~~~  368 (380)
T PLN02807        294 DSILDLCYQRGLCSVLLDLRGNVGGLESLLKDALEDKLLQKVVVEVLPFWSGSQGQSIAS-----FGGSQSFKLKRLTSR  368 (380)
T ss_pred             HHHHHHHHHCCCCEEEEecCCCCCCHHHHHHHHHHCCCccEEEEEEcCceecCCCCcccc-----cChhhCcccEeeeEE
Confidence            9999999999999999999      89999999999999999999999999985555432     345677899999999


Q ss_pred             EeCCCeEEEEEe
Q 039210          409 QVGPDMLISGFL  420 (612)
Q Consensus       409 ~~g~dvv~~~y~  420 (612)
                      .+|+|+++.+|+
T Consensus       369 ~~g~Dv~l~~~~  380 (380)
T PLN02807        369 EVGGSVVLEGYF  380 (380)
T ss_pred             EECCeEEEEEEC
Confidence            999999887763

>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD Back     alignment and domain information
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional Back     alignment and domain information
>COG3236 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism] Back     alignment and domain information
>TIGR02464 ribofla_fusion conserved hypothetical protein, ribA/ribD-fused Back     alignment and domain information
>COG1985 RibD Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PF08719 DUF1768: Domain of unknown function (DUF1768); InterPro: IPR012816 This entry describes a sequence region that occurs in at least three different polypeptide contexts Back     alignment and domain information
>TIGR01508 rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal Back     alignment and domain information
>PRK05625 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated Back     alignment and domain information
>TIGR00227 ribD_Cterm riboflavin-specific deaminase C-terminal domain Back     alignment and domain information
>PRK14059 hypothetical protein; Provisional Back     alignment and domain information
>PF01872 RibD_C: RibD C-terminal domain; InterPro: IPR002734 This domain is found in the C terminus of the bifunctional deaminase-reductase of Escherichia coli, Bacillus subtilis and other bacteria in combination with IPR002125 from INTERPRO that catalyses the second and third steps in the biosynthesis of riboflavin, i Back     alignment and domain information
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase Back     alignment and domain information
>PRK10860 tRNA-specific adenosine deaminase; Provisional Back     alignment and domain information
>PHA02573 30 Back     alignment and domain information
>TIGR02571 ComEB ComE operon protein 2 Back     alignment and domain information
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PHA02588 cd deoxycytidylate deaminase; Provisional Back     alignment and domain information
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain Back     alignment and domain information
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases Back     alignment and domain information
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3 Back     alignment and domain information
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region Back     alignment and domain information
>KOG1018 consensus Cytosine deaminase FCY1 and related enzymes [Nucleotide transport and metabolism] Back     alignment and domain information
>KOG3127 consensus Deoxycytidylate deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd00209 DHFR Dihydrofolate reductase (DHFR) Back     alignment and domain information
>COG0262 FolA Dihydrofolate reductase [Coenzyme metabolism] Back     alignment and domain information
>PF08010 Phage_30_3: Bacteriophage protein GP30 Back     alignment and domain information
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain Back     alignment and domain information
>PTZ00164 bifunctional dihydrofolate reductase-thymidylate synthase; Provisional Back     alignment and domain information
>PRK00478 scpA segregation and condensation protein A/unknown domain fusion protein; Provisional Back     alignment and domain information
>PRK10769 folA dihydrofolate reductase; Provisional Back     alignment and domain information
>PF14439 Bd3614-deam: Bd3614-like deaminase Back     alignment and domain information
>PF00186 DHFR_1: Dihydrofolate reductase; InterPro: IPR001796 Dihydrofolate reductase (DHFR) (1 Back     alignment and domain information
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric Back     alignment and domain information
>KOG2771 consensus Subunit of tRNA-specific adenosine-34 deaminase [RNA processing and modification] Back     alignment and domain information
>KOG1324 consensus Dihydrofolate reductase [Coenzyme transport and metabolism] Back     alignment and domain information
>PRK06848 hypothetical protein; Validated Back     alignment and domain information
>PRK12411 cytidine deaminase; Provisional Back     alignment and domain information
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric Back     alignment and domain information
>PRK05578 cytidine deaminase; Validated Back     alignment and domain information
>PRK09027 cytidine deaminase; Provisional Back     alignment and domain information
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>PLN02402 cytidine deaminase Back     alignment and domain information
>PRK08298 cytidine deaminase; Validated Back     alignment and domain information
>KOG0833 consensus Cytidine deaminase [Nucleotide transport and metabolism] Back     alignment and domain information
>PLN02182 cytidine deaminase Back     alignment and domain information
>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme Back     alignment and domain information
>PRK09027 cytidine deaminase; Provisional Back     alignment and domain information
>PF14437 MafB19-deam: MafB19-like deaminase Back     alignment and domain information
>PLN02402 cytidine deaminase Back     alignment and domain information
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query612
2b3z_A373 Crystal Structure Of A Bifunctional Deaminase And R 3e-34
2b3w_A168 Nmr Structure Of The E.Coli Protein Ybia, Northeast 2e-27
2hxv_A360 Crystal Structure Of A Diaminohydroxyphosphoribosyl 5e-25
2g6v_A402 The Crystal Structure Of Ribd From Escherichia Coli 4e-23
2o7p_A380 The Crystal Structure Of Ribd From Escherichia Coli 5e-23
2azn_A219 X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h) 5e-19
2p4g_A270 Crystal Structure Of A Pyrimidine Reductase-Like Pr 2e-04
>pdb|2B3Z|A Chain A, Crystal Structure Of A Bifunctional Deaminase And Reductase Involved In Riboflavin Biosynthesis Length = 373 Back     alignment and structure 
Iteration: 1

 Score =  143 bits (361), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 177/363 (48%), Gaps = 31/363 (8%)
Query: 61  GFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDC 120
           G T  +P  G ++    G++ G G     G   AEV A+   G+   GA  Y+ +EP   
Sbjct: 30  GQTESNPLVGAVVVKD-GQIVGMGAHLKYGEAHAEVHAIHMAGAHAEGADIYVTLEPCSH 88
Query: 121 HGDHTAVSALV-QAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEA 179
           +G     + L+  +GI RV V +R+P   + G+ +  ++  G++V       +  + ++A
Sbjct: 89  YGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVR------EGILADQA 142
Query: 180 RKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKT 239
            +    +N   +H   + +P+   K A +LD            GKIA S+G + WI+S+ 
Sbjct: 143 ER----LNEKFLHFMRTGLPYVTLKAAASLD------------GKIATSTGDSKWITSEA 186
Query: 240 SRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGG-GHTPMRIVLTQTLNLPEEANLWDV 298
           +R      R    +++VG  TV+ DNP LT R       P+R++L   L++PE+A +   
Sbjct: 187 ARQDAQQYRKTHQSILVGVGTVKADNPSLTCRLPNVTKQPVRVILDTVLSIPEDAKVICD 246
Query: 299 SDAPTIVVTQRGARRKFQKYLASRGVEV--VEFDILNSRDVMEYFHDRGYLSILWECGGT 356
             APT + T   A  + +K L++ GV +  +E + +   DV++   + G +S+  E G  
Sbjct: 247 QIAPTWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSA 306
Query: 357 LAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQA--LDLIDICYEQVGPDM 414
           +  S +  G   ++  + APK+IGG +AP+ +S  G   M     L   DI   Q+G D+
Sbjct: 307 VHGSFVKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTDIT--QIGRDI 364
Query: 415 LIS 417
            ++
Sbjct: 365 KLT 367
>pdb|2B3W|A Chain A, Nmr Structure Of The E.Coli Protein Ybia, Northeast Structural Genomics Target Et24 Length = 168 Back     alignment and structure
>pdb|2HXV|A Chain A, Crystal Structure Of A Diaminohydroxyphosphoribosylaminopyrimidine Deaminase 5-Amino-6-(5-Phosphoribosylamino)uracil Reductase (Tm1828) From Thermotoga Maritima At 1.80 A Resolution Length = 360 Back     alignment and structure
>pdb|2G6V|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli Length = 402 Back     alignment and structure
>pdb|2O7P|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In Complex With The Oxidised Nadp+ Cofactor In The Active Site Of The Reductase Domain Length = 380 Back     alignment and structure
>pdb|2AZN|A Chain A, X-Ray Structure Of 2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5- Phosphate Reductase Length = 219 Back     alignment and structure
>pdb|2P4G|A Chain A, Crystal Structure Of A Pyrimidine Reductase-Like Protein (Dip1392) From Corynebacterium Diphtheriae Nctc At 2.30 A Resolution Length = 270 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query612
2b3z_A373 Riboflavin biosynthesis protein RIBD; alpha/beta/a 1e-107
2g6v_A402 Riboflavin biosynthesis protein RIBD; RIBD APO str 1e-96
2hxv_A360 Diaminohydroxyphosphoribosylaminopyrimidine deami 8e-85
2azn_A219 HTP reductase, putative 5-amino-6-(5-phosphoribosy 5e-78
2p4g_A270 Hypothetical protein; pyrimidine reductase-like pr 1e-59
2b3w_A168 Hypothetical protein YBIA; structure, NESG, struct 4e-53
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-10
1wkq_A164 Guanine deaminase; domain SWAP, the cytidine deami 3e-04
1p6o_A161 Cytosine deaminase; hydrolase, dimer, inhibitor bo 3e-04
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* Length = 373 Back     alignment and structure
 Score =  326 bits (838), Expect = e-107
 Identities = 105/386 (27%), Positives = 184/386 (47%), Gaps = 39/386 (10%)

Query: 43  AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAG 102
           + +  Y++ A D+A +  G T  +P  G ++    G++ G G     G   AEV A+   
Sbjct: 12  SMEEYYMKLALDLAKQGEGQTESNPLVGAVV-VKDGQIVGMGAHLKYGEAHAEVHAIHMA 70

Query: 103 GSFCRGATAYLNMEPGDC--HGDHTA--VSALVQAGITRVVVGIR--NPLQHLRGQAVRA 156
           G+   GA  Y+ +EP  C  +G  T      ++ +GI RV V +R  NPL  + G+ +  
Sbjct: 71  GAHAEGADIYVTLEP--CSHYG-KTPPCAELIINSGIKRVFVAMRDPNPL--VAGRGISM 125

Query: 157 LRSQGLQVHV-LGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFSVFKYAMTLDVILPG 215
           ++  G++V   +         ++A +    +N   +H   + +P+   K A +LD     
Sbjct: 126 MKEAGIEVREGILA-------DQAER----LNEKFLHFMRTGLPYVTLKAAASLD----- 169

Query: 216 VLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARH-GG 274
                  GKIA S+G + WI+S+ +R      R    +++VG  TV+ DNP LT R    
Sbjct: 170 -------GKIATSTGDSKWITSEAARQDAQQYRKTHQSILVGVGTVKADNPSLTCRLPNV 222

Query: 275 GHTPMRIVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEF--DIL 332
              P+R++L   L++PE+A +     APT + T   A  + +K L++ GV +     + +
Sbjct: 223 TKQPVRVILDTVLSIPEDAKVICDQIAPTWIFTTARADEEKKKRLSAFGVNIFTLETERI 282

Query: 333 NSRDVMEYFHDRGYLSILWECGGTLAASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELG 392
              DV++   + G +S+  E G  +  S +  G   ++  + APK+IGG +AP+ +S  G
Sbjct: 283 QIPDVLKILAEEGIMSVYVEGGSAVHGSFVKEGCFQEIIFYFAPKLIGGTHAPSLISGEG 342

Query: 393 MVEMSQALDLIDICYEQVGPDMLISG 418
              M     L      Q+G D+ ++ 
Sbjct: 343 FQSMKDVPLLQFTDITQIGRDIKLTA 368
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* Length = 402 Back     alignment and structure
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 Length = 360 Back     alignment and structure
>2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil; oxidoreductase; HET: MA5 NAP EPE; 2.70A {Methanocaldococcus jannaschii} SCOP: c.71.1.2 Length = 219 Back     alignment and structure
>2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics, JCSG; 2.30A {Corynebacterium diphtheriae} Length = 270 Back     alignment and structure
>2b3w_A Hypothetical protein YBIA; structure, NESG, structural genomics, COG 3236, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.336.1.1 Length = 168 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Length = 164 Back     alignment and structure
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Length = 161 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query612
2b3z_A373 Riboflavin biosynthesis protein RIBD; alpha/beta/a 100.0
2g6v_A402 Riboflavin biosynthesis protein RIBD; RIBD APO str 100.0
2hxv_A360 Diaminohydroxyphosphoribosylaminopyrimidine deami 100.0
2b3w_A168 Hypothetical protein YBIA; structure, NESG, struct 100.0
2azn_A219 HTP reductase, putative 5-amino-6-(5-phosphoribosy 100.0
2p4g_A270 Hypothetical protein; pyrimidine reductase-like pr 100.0
3dh1_A189 TRNA-specific adenosine deaminase 2; zinc-binding 99.97
2nx8_A179 TRNA-specific adenosine deaminase; TAD, hydrolase; 99.97
2g84_A197 Cytidine and deoxycytidylate deaminase zinc-bindi; 99.97
2b3j_A159 TRNA adenosine deaminase; mixed alpha-beta, protei 99.97
1p6o_A161 Cytosine deaminase; hydrolase, dimer, inhibitor bo 99.96
1z3a_A168 TRNA-specific adenosine deaminase; tRNA adenosine 99.96
2w4l_A178 DCMP deaminse, deoxycytidylate deaminase; pyrimidi 99.96
2a8n_A144 Cytidine and deoxycytidylate deaminase; RNA editin 99.96
1wwr_A171 TRNA adenosine deaminase TADA; homodimer, riken st 99.96
1wkq_A164 Guanine deaminase; domain SWAP, the cytidine deami 99.95
2hvw_A184 Deoxycytidylate deaminase; 3-layer (alpha-beta)-sa 99.95
2gd9_A189 Hypothetical protein YYAP; structural genomics, jo 99.95
1vq2_A193 DCMP deaminase, deoxycytidylate deaminase; hydrola 99.95
3ky8_A197 Putative riboflavin biosynthesis protein; structur 99.94
3jtw_A178 Dihydrofolate reductase; YP_805003.1, structural G 99.93
2xw7_A178 Dihydrofolate reductase; oxidoreductase, NADPH; HE 99.93
1cz3_A168 Dihydrofolate reductase; dimer, hyperthermophIle, 99.91
3g8q_A278 Predicted RNA-binding protein, contains thump doma 99.89
2nyt_A190 Probable C->U-editing enzyme apobec-2; cytidine de 99.79
3kgy_A231 Bifunctional deaminase-reductase domain protein; p 99.74
1vdr_A162 DHFR, dihydrofolate reductase; oxidoreductase, hal 99.69
1zdr_A164 Dihydrofolate reductase; DHFR, NADP, oxidoreductas 99.62
1kmv_A186 DHFR, dihydrofolate reductase; oxidoreductase, ant 99.6
1aoe_A192 DHFR, dihydrofolate reductase; oxidoreductase, ant 99.59
3cse_A227 Dihydrofolate reductase; protein-ligand complex, o 99.55
3ix9_A190 Dihydrofolate reductase; central beta sheet surrou 99.55
2w3w_A167 Dihydrofolate reductase; nonclassical antifolates, 99.52
2w9h_A159 DHFR, dihydrofolate reductase; oxidoreductase, one 99.48
3dfr_A162 Dihydrofolate reductase; oxido-reductase; HET: NDP 99.4
3nzb_X206 Dihydrofolate reductase; pneumocystius carinii DHF 99.38
1df7_A159 DHFR, dihydrofolate reductase; structure-based inh 99.36
3s9u_A165 Dihydrofolate reductase; oxidoreductase; HET: NAP 99.36
1j3k_A280 Bifunctional dihydrofolate reductase-thymidylate s 99.34
3tq8_A178 Dihydrofolate reductase; oxidoreductase-oxidoreduc 99.34
3ia4_A162 Dihydrofolate reductase; NADPH, methotrexate, oxid 99.32
3nrr_A 515 Dihydrofolate reductase-thymidylate synthase; stru 99.26
3hj3_A 521 Chain A, crystal structure of DHFR; TS, enzyme, cr 99.2
3dau_A159 Dihydrofolate reductase; oxidoreductase, pseudo-ro 99.19
2bl9_A238 Dihydrofolate reductase-thymidylate synthase; plam 99.17
1uwz_A136 Cytidine deaminase; CDD, tetramer, zinc binding, p 99.1
2fr5_A146 Cytidine deaminase; tetrahydrouridine, protein-inh 99.08
2z3g_A130 Blasticidin-S deaminase; hydrolase, cytidine deami 99.01
3rg9_A240 Bifunctional dihydrofolate reductase-thymidylate; 98.97
1juv_A193 DHFR, dihydrofolate reductase; complexed with NADP 98.96
3irm_A 521 Bifunctional dihydrofolate reductase-thymidylate; 98.47
3qg2_A 608 Bifunctional dihydrofolate reductase-thymidylate; 98.38
3b8f_A142 Putative blasticidin S deaminase; cytidine deamina 98.38
1r5t_A142 Cytidine deaminase; zinc dependent deaminase, RNA 98.37
3r2n_A138 Cytidine deaminase; structural genomics, seattle s 98.34
2d30_A141 Cytidine deaminase; purines, pyrimidines, nucleosi 98.12
1ctt_A294 Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es 97.72
3mpz_A150 Cytidine deaminase; ssgcid, structu genomics, seat 97.54
1ctt_A294 Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Es 97.38
3oj6_A158 Blasticidin-S deaminase; ssgcid, seattle structura 97.04
3dmo_A138 Cytidine deaminase; structural genomics, seattle s 96.39
4eg2_A298 Cytidine deaminase; UMP synthesis, Zn binding, hyd 95.63
3v4k_A203 DNA DC->DU-editing enzyme apobec-3G; antiviral def 93.69
4eg2_A298 Cytidine deaminase; UMP synthesis, Zn binding, hyd 93.01
3vow_A190 Probable DNA DC->DU-editing enzyme apobec-3C; anti 92.77
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A* Back     alignment and structure
Probab=100.00  E-value=1.6e-79  Score=657.28  Aligned_cols=355  Identities=28%  Similarity=0.494  Sum_probs=330.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCcEEEEEEecCCeEEEEeeCCCCCCChHHHHHHHHccCCCCCcEEEEcCCCCCCCC
Q 039210           43 AEDAAYIRRAADIADKSAGFTSPHPNFGCLIATSTGKVAGEGYLYAQGTKPAEVQAVEAGGSFCRGATAYLNMEPGDCHG  122 (612)
Q Consensus        43 ~~d~~~M~~A~~lA~~~~~~~~~~~~vGaViv~~~g~ii~~G~n~~~~~~HAE~~Ai~~a~~~~~g~tlYvTlEPC~~~g  122 (612)
                      +.|++||++|+++|+++.+.++|||+|||||| +||+||++|||...+++|||++||++|+..++|||||||+|||+|||
T Consensus        12 ~~~~~~m~~A~~~A~~~~~~~~~~~~vGaviv-~~g~ii~~g~n~~~~~~HAE~~Ai~~a~~~~~g~tlyvTlePC~~~G   90 (373)
T 2b3z_A           12 SMEEYYMKLALDLAKQGEGQTESNPLVGAVVV-KDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEGADIYVTLEPCSHYG   90 (373)
T ss_dssp             -CHHHHHHHHHHHHGGGTTSSTTSCCCEEEEE-SSSSEEEEEECCSTTSCCHHHHHHHHHGGGGTTCEEEESSCCCCCCS
T ss_pred             chHHHHHHHHHHHHHhhCcccCCCCcEEEEEE-ECCEEEEEEeCCCCCCcCHHHHHHHHhhHhcCCeEEEEeCCCccCcC
Confidence            34889999999999999988899999999999 79999999999999999999999999999999999999999999999


Q ss_pred             ch-hHHHHHHHhCCCEEEEEeeCCCchhhhHHHHHHHhCCcEEEEcccchhhHHHHHHHHhhhhcccccccccccCccce
Q 039210          123 DH-TAVSALVQAGITRVVVGIRNPLQHLRGQAVRALRSQGLQVHVLGEDLQSKIIEEARKSCLLVNAPLIHRATSRVPFS  201 (612)
Q Consensus       123 ~~-~C~~ai~~agI~rVv~~~~dp~~~~~g~g~~~l~~~gi~V~~~~~~~~~~~l~~~~~e~~~l~~~f~~~~~~~rP~V  201 (612)
                      || ||+++|+++||+||||+..||++.+.|+|+++|+++||+|+.+++       +   +||.++++.||++++++||||
T Consensus        91 ~t~~C~~ai~~agi~rVv~~~~d~~~~~~g~~~~~l~~~gi~v~~g~l-------~---~e~~~l~~~f~~~~~~~rP~V  160 (373)
T 2b3z_A           91 KTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVREGIL-------A---DQAERLNEKFLHFMRTGLPYV  160 (373)
T ss_dssp             SSCCHHHHHHHHTCCEEEESSCCSCTTTTTHHHHHHHTTTCEEEECTT-------H---HHHHHHTHHHHHHHHHSSCEE
T ss_pred             CChHHHHHHHHhCCCEEEEEecccchhhhhHHHHHHHhCCeEEEeCCc-------c---cccccccceeeeeccccchhh
Confidence            99 599999999999999999999999999999999999999988764       4   999999999999999999999


Q ss_pred             eeeeeccccccccccccccccCceecCCCCcccCCChhHHHHHHHHhhccCeEEeccceEeccCCCcccCCCCC-CCCeE
Q 039210          202 VFKYAMTLDVILPGVLSWMLTGKIAASSGHAAWISSKTSRDRVFDLRGRSDAVVVGGNTVRRDNPRLTARHGGG-HTPMR  280 (612)
Q Consensus       202 i~k~A~SLD~~~~~~~~~~~~G~ia~~~g~~~wit~~~~~~~~~~lr~~~DailvG~~T~~~d~p~L~~r~~~~-~~P~~  280 (612)
                      ++++|+|||            |+|++++|.+.||++++++.++|++|+.+||||+|++||+.|||.|++|++.+ ++|++
T Consensus       161 ~lk~A~SLD------------G~Ia~~~G~~~Wit~~~~~~~~~~lr~~~daILvGr~T~~~d~P~Lt~R~~~g~~~P~r  228 (373)
T 2b3z_A          161 TLKAAASLD------------GKIATSTGDSKWITSEAARQDAQQYRKTHQSILVGVGTVKADNPSLTCRLPNVTKQPVR  228 (373)
T ss_dssp             EEEEEEETT------------SBSSCTTSCCTTSSCHHHHHHHTTHHHHSSEEEEEHHHHHHHCCCCCCCSTTCCSCCEE
T ss_pred             eeeeeecCC------------CceeccCCCccccCCHHHHHHHHHHHHHCCEEEEChhhhhhcCCcccccCcCCCCCCeE
Confidence            999999999            99999999999999999999999999999999999999999999999998765 89999


Q ss_pred             EEEcCCCCCCCCCcccccCCCCEEEEEcCCcchHHHHHHHhCCcEEEEec--CCCHHHHHHHHHHcCCCeEEEeecHHHH
Q 039210          281 IVLTQTLNLPEEANLWDVSDAPTIVVTQRGARRKFQKYLASRGVEVVEFD--ILNSRDVMEYFHDRGYLSILWECGGTLA  358 (612)
Q Consensus       281 vVvd~~~~l~~~~~l~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~--~~dl~~~l~~L~~~g~~~IlveGG~~L~  358 (612)
                      ||+|+++++|+++++|+....|+||+|++.++.++...|...|++++.+.  .+|+.++++.|+++|+++||||||++|+
T Consensus       229 vVld~~~~lp~~a~~~~~~~~~~iV~t~~~~~~~~~~~l~~~gv~vi~~~~~~~dl~~~l~~L~~~g~~~vlveGG~~l~  308 (373)
T 2b3z_A          229 VILDTVLSIPEDAKVICDQIAPTWIFTTARADEEKKKRLSAFGVNIFTLETERIQIPDVLKILAEEGIMSVYVEGGSAVH  308 (373)
T ss_dssp             EEECTTCCCCTTCHHHHSCSSCEEEEECTTSCHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHTTCCEEEEEECHHHH
T ss_pred             EEEcCCCCCCCcchhhcCCCCCEEEEEcCCCCHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHCCCCEEEEEEhHHHH
Confidence            99999999999989997556899999998877778888888999998773  4899999999999999999999999999


Q ss_pred             HHHHHcCCCcEEEEEEeeEEecCCCCCCCcccccccccccccCcEeeeEEEeCCCeEEEEEe
Q 039210          359 ASAISSGLIHKVFAFVAPKIIGGKNAPTPVSELGMVEMSQALDLIDICYEQVGPDMLISGFL  420 (612)
Q Consensus       359 ~sfL~~gLVDEi~l~iaP~ilG~~~~~~~f~~~~~~~~~~~~~L~l~~~~~~g~dvv~~~y~  420 (612)
                      ++||++|||||++++++|+++|+.+++++|++.++..+....+|++++++.+++|+++.++.
T Consensus       309 ~s~L~agLVDEl~l~iaP~llG~~~g~~lf~~~~~~~~~~~~~l~l~~~~~~g~dv~l~y~~  370 (373)
T 2b3z_A          309 GSFVKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKLTAKP  370 (373)
T ss_dssp             HHHHHHTCCSEEEEEEESBCCCCSSSCBSSCSSCCSSTTSSCBEEEEEEEEETTEEEEEEEE
T ss_pred             HHHHhCCCceEEEEEEcceEecCCCCcCcccccccccccccccceEeEEEEECCcEEEEEEE
Confidence            99999999999999999999998667889987777777788899999999999998665543
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A* Back     alignment and structure
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2 Back     alignment and structure
>2b3w_A Hypothetical protein YBIA; structure, NESG, structural genomics, COG 3236, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.336.1.1 Back     alignment and structure
>2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil; oxidoreductase; HET: MA5 NAP EPE; 2.70A {Methanocaldococcus jannaschii} SCOP: c.71.1.2 Back     alignment and structure
>2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics, JCSG; 2.30A {Corynebacterium diphtheriae} Back     alignment and structure
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens} Back     alignment and structure
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6} Back     alignment and structure
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2 Back     alignment and structure
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2 Back     alignment and structure
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A Back     alignment and structure
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A Back     alignment and structure
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens} Back     alignment and structure
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2 Back     alignment and structure
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2 Back     alignment and structure
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A Back     alignment and structure
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A* Back     alignment and structure
>2gd9_A Hypothetical protein YYAP; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 2.30A {Bacillus subtilis} Back     alignment and structure
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2 Back     alignment and structure
>3ky8_A Putative riboflavin biosynthesis protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE UNL; 2.12A {Shewanella loihica} Back     alignment and structure
>3jtw_A Dihydrofolate reductase; YP_805003.1, structural GE joint center for structural genomics, JCSG, protein structu initiative; 1.90A {Pediococcus pentosaceus atcc 25745} Back     alignment and structure
>2xw7_A Dihydrofolate reductase; oxidoreductase, NADPH; HET: PG4 NDP; 2.00A {Mycobacterium smegmatis} Back     alignment and structure
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A* Back     alignment and structure
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri} Back     alignment and structure
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A Back     alignment and structure
>3kgy_A Bifunctional deaminase-reductase domain protein; putative dihydrofolate reductase, structural genomics; HET: MSE NDP; 1.50A {Chloroflexus aurantiacus j-10-fl} Back     alignment and structure
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A Back     alignment and structure
>1zdr_A Dihydrofolate reductase; DHFR, NADP, oxidoreductase; 2.00A {Geobacillus stearothermophilus} Back     alignment and structure
>1kmv_A DHFR, dihydrofolate reductase; oxidoreductase, antiparasitic drugs, lipophilic antifolates; HET: LII NDP; 1.05A {Homo sapiens} SCOP: c.71.1.1 PDB: 1dhf_A* 1hfr_A* 1drf_A* 1kms_A* 1ohj_A* 1ohk_A* 1pd8_A* 1pd9_A* 1pdb_A 1s3u_A* 1s3v_A* 1s3w_A* 1u72_A* 1yho_A* 2c2s_A* 2c2t_A* 2dhf_A* 3ghw_A* 3ntz_A* 3nu0_A* ... Back     alignment and structure
>1aoe_A DHFR, dihydrofolate reductase; oxidoreductase, antifungal target; HET: NDP GW3; 1.60A {Candida albicans} SCOP: c.71.1.1 PDB: 1ai9_A* 1ia1_A* 1ia2_A* 1ia3_A* 1ia4_A* 1m78_A* 1m79_A* 1m7a_A* 3qlr_A* 3qls_A* 3qlw_A* Back     alignment and structure
>3cse_A Dihydrofolate reductase; protein-ligand complex, oxidoreductase; HET: NAP N22; 1.60A {Candida glabrata} PDB: 3eej_A* 3eek_A* 3eel_A* 3eem_A* 3qlx_A* 3qly_A* 3qlz_A* Back     alignment and structure
>3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4 alpha helices, oxidoreductase; HET: NDP MTX; 1.95A {Streptococcus pneumoniae} Back     alignment and structure
>2w3w_A Dihydrofolate reductase; nonclassical antifolates, one-carbon metabolism, lipophilic antifolates, NADP, oxidoreductase; HET: VG9 NDP; 1.60A {Mycobacterium avium} PDB: 2w3v_A* Back     alignment and structure
>2w9h_A DHFR, dihydrofolate reductase; oxidoreductase, one-carbon metabolism; HET: TOP; 1.48A {Staphylococcus aureus} PDB: 2w9g_A* 3sqy_X* 3srq_X* 3srr_X* 3srs_X* 3sru_X* 3srw_X* 3frd_X* 3fre_X* 3frf_X* 3fyv_X* 3fyw_X* 3sr5_X* 3frb_X* 3fra_X* 3fy8_X* 3fy9_X* 3fq0_A* 3f0b_X* 3f0s_X* ... Back     alignment and structure
>3dfr_A Dihydrofolate reductase; oxido-reductase; HET: NDP MTX; 1.70A {Lactobacillus casei} SCOP: c.71.1.1 PDB: 1ao8_A* 1bzf_A* 1dis_A* 1diu_A* 1lud_A* 2hm9_A* 2hqp_A* 2l28_A 2lf1_A* Back     alignment and structure
>3nzb_X Dihydrofolate reductase; pneumocystius carinii DHFR inhibitor complexes, oxidoreducta oxidoreductase-oxidoreductase inhibitor complex; HET: D2N NAP; 1.45A {Pneumocystis carinii} SCOP: c.71.1.1 PDB: 1daj_A* 1cd2_A* 1e26_A* 1klk_A* 1ly3_A* 1ly4_A* 1s3y_A* 2cd2_A* 2fzh_A* 1dyr_A* 3cd2_A* 3nz6_X* 3nz9_X* 3nza_X* 2fzi_A* 3nzc_X* 3td8_A* 4cd2_A* 1vj3_A* Back     alignment and structure
>1df7_A DHFR, dihydrofolate reductase; structure-based inhibitor design, folateanalogs, rossmann fold; HET: NDP MTX; 1.70A {Mycobacterium tuberculosis} SCOP: c.71.1.1 PDB: 1dg5_A* 1dg7_A* 1dg8_A* 2cig_A* Back     alignment and structure
>3s9u_A Dihydrofolate reductase; oxidoreductase; HET: NAP 5DR; 1.90A {Bacillus anthracis} PDB: 3sa1_A* 3sa2_A* 3sai_A* 3e0b_A* 3jvx_A* 3jwm_A* 3jwk_A* 3jw5_A* 3jwf_A* 3jwc_A* 3jw3_A* 3dat_A* 2qk8_A* 3fl8_A* 3fl9_A* 2kgk_A* Back     alignment and structure
>1j3k_A Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: c.71.1.1 PDB: 3dg8_A* 1j3j_A* 1j3i_A* 3dga_A* Back     alignment and structure
>3tq8_A Dihydrofolate reductase; oxidoreductase-oxidoreductase inhib complex; HET: NDP TOP; 1.90A {Coxiella burnetii} SCOP: c.71.1.0 PDB: 3tq9_A* 3tqa_A* 3tqb_A* Back     alignment and structure
>3ia4_A Dihydrofolate reductase; NADPH, methotrexate, oxidoreductase; HET: NDP MTX; 1.70A {Moritella profunda} SCOP: c.71.1.0 PDB: 3ia5_A 2zza_A* Back     alignment and structure
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A* Back     alignment and structure
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover, non-active site, oxidoreductase; HET: UMP CB3 MTX NDP; 2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A* 3dl5_A* 3dl6_A* 2oip_A* Back     alignment and structure
>3dau_A Dihydrofolate reductase; oxidoreductase, pseudo-rossmann fold, adenine nucleotide BIN domain, antibiotic resistance, methotrexate resistance; HET: MTX NAP; 1.50A {Escherichia coli} SCOP: c.71.1.1 PDB: 1ddr_A* 1dds_A* 3k74_A 1ra9_A* 1dre_A* 1drh_A* 1dyi_A* 1dyh_A* 1jol_A* 1jom_A* 1ra1_A* 1dyj_A* 1ra3_A* 1ra8_A* 1ra2_A* 1rb2_A* 1rb3_A* 1rc4_A* 1rd7_A* 1re7_A* ... Back     alignment and structure
>2bl9_A Dihydrofolate reductase-thymidylate synthase; plamodium vivax, pyrimethamine, malaria, drug resistance, oxidoreductase; HET: NDP CP6; 1.9A {Plasmodium vivax} PDB: 2blb_A* 2blc_A* 2bla_A* Back     alignment and structure
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A* Back     alignment and structure
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A* Back     alignment and structure
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A* Back     alignment and structure
>3rg9_A Bifunctional dihydrofolate reductase-thymidylate; oxidoreductase, oxidoreductase-oxidoreductase inhibitor complex; HET: NDP WRA; 2.00A {Trypanosoma brucei rhodesiense} PDB: 3qfx_A* Back     alignment and structure
>1juv_A DHFR, dihydrofolate reductase; complexed with NADPH, oxidoreductase; HET: NDP; 1.70A {Enterobacteria phage T4} SCOP: c.71.1.1 Back     alignment and structure
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS antifolate complex, methyltransfe multifunctional enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB: 3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A* 3kjs_A* Back     alignment and structure
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine, antifolate resistance, oxidoreductase, transferase; HET: CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A* 4dp3_A* 4dph_A* 3qgt_A* 3um8_A* 4dpd_A* 3um5_A* 3um6_A* Back     alignment and structure
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis} Back     alignment and structure
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1 Back     alignment and structure
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0 Back     alignment and structure
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1 Back     alignment and structure
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* Back     alignment and structure
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A Back     alignment and structure
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A* Back     alignment and structure
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis} Back     alignment and structure
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei} Back     alignment and structure
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae} Back     alignment and structure
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A* Back     alignment and structure
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae} Back     alignment and structure
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 612
d2b3wa1160 d.336.1.1 (A:1-160) Hypothetical protein YbiA {Esc 5e-56
d2azna1219 c.71.1.2 (A:6-224) HTP reductase {Methanococcus ja 1e-31
d2b3za1214 c.71.1.2 (A:146-359) Riboflavin biosynthesis prote 3e-30
d2hxva1198 c.71.1.2 (A:148-345) Riboflavin biosynthesis prote 9e-30
d2b3za2145 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein 7e-10
d2hxva2147 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein 3e-07
>d2b3wa1 d.336.1.1 (A:1-160) Hypothetical protein YbiA {Escherichia coli [TaxId: 562]} Length = 160 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: YbiA-like
superfamily: YbiA-like
family: YbiA-like
domain: Hypothetical protein YbiA
species: Escherichia coli [TaxId: 562]

 Score =  184 bits (469), Expect = 5e-56
 Identities = 69/181 (38%), Positives = 98/181 (54%), Gaps = 22/181 (12%)

Query: 427 MPVIPSEDETFAIDPTVTPYEPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVE 486
           MPV     +    D        +II FY T D YG FSNF+  PI++       TW + E
Sbjct: 1   MPVRAQRIQHVMQD--------TIINFYSTSDDYGDFSNFAAWPIKVDGK----TWPTSE 48

Query: 487 HYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAARLGRSMQRQHPDWVRSDWESVKIDIMY 546
           HY+QA KF        + + E+I+   SP  AAR+GR   +     +R +WESVK  +M 
Sbjct: 49  HYFQAQKFLD------EKYREEIRRVSSPMVAARMGRDRSK----PLRKNWESVKEQVMR 98

Query: 547 RALKCKFSIYPHLNSMLLSTGGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLG 606
           +AL+ KF  +  L ++LL+T  + LVE + +D +WG G  G+G N LG LLM+LR +   
Sbjct: 99  KALRAKFEQHAELRALLLATAPAKLVEHTENDAYWGDGGHGKGKNRLGYLLMELREQLAI 158

Query: 607 E 607
           E
Sbjct: 159 E 159
>d2azna1 c.71.1.2 (A:6-224) HTP reductase {Methanococcus jannaschii [TaxId: 2190]} Length = 219 Back     information, alignment and structure
>d2b3za1 c.71.1.2 (A:146-359) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Length = 214 Back     information, alignment and structure
>d2hxva1 c.71.1.2 (A:148-345) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Length = 198 Back     information, alignment and structure
>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Length = 145 Back     information, alignment and structure
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Length = 147 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query612
d2b3wa1160 Hypothetical protein YbiA {Escherichia coli [TaxId 100.0
d2b3za1214 Riboflavin biosynthesis protein RibD {Bacillus sub 100.0
d2azna1219 HTP reductase {Methanococcus jannaschii [TaxId: 21 100.0
d2hxva2147 Riboflavin biosynthesis protein RibD {Thermotoga m 100.0
d2b3za2145 Riboflavin biosynthesis protein RibD {Bacillus sub 100.0
d2hxva1198 Riboflavin biosynthesis protein RibD {Thermotoga m 100.0
d1z3aa1156 tRNA adenosine deaminase TadA {Escherichia coli [T 99.97
d1wwra1151 tRNA adenosine deaminase TadA {Aquifex aeolicus [T 99.97
d2b3ja1151 tRNA adenosine deaminase TadA {Staphylococcus aure 99.97
d1p6oa_156 Cytosine deaminase {Baker's yeast (Saccharomyces c 99.96
d1wkqa_158 Guanine deaminase GuaD {Bacillus subtilis [TaxId: 99.95
d2a8na1130 Cytidine and deoxycytidylate deaminase CodA {Agrob 99.94
d2g84a1189 Putative deaminase NE0047 {Nitrosomonas europaea [ 99.94
d1vq2a_193 Deoxycytidylate deaminase {Bacteriophage T4 [TaxId 99.92
d1d1ga_164 Dihydrofolate reductase, prokaryotic type {Thermot 99.85
d1vdra_157 Dihydrofolate reductase, prokaryotic type {Halofer 98.7
d1seja1178 Bifunctional enzyme dihydrofolate reductase-thymid 98.56
d2fzia1206 Dihydrofolate reductases, eukaryotic type {Fungus 98.47
d3dfra_162 Dihydrofolate reductase, prokaryotic type {Lactoba 98.46
d1j3ka_231 Bifunctional enzyme dihydrofolate reductase-thymid 98.24
d1kmva_186 Dihydrofolate reductases, eukaryotic type {Human ( 98.13
d1ra9a_159 Dihydrofolate reductase, prokaryotic type {Escheri 98.11
d1aoea_192 Dihydrofolate reductases, eukaryotic type {Yeast ( 98.05
d1df7a_159 Dihydrofolate reductase, prokaryotic type {Mycobac 97.82
d1alna2144 Two-domain cytidine deaminase {Escherichia coli [T 97.78
d1r5ta_141 mono-domain cytidine deaminase {Baker's yeast (Sac 97.21
d2fr5a1136 mono-domain cytidine deaminase {Mouse (Mus musculu 97.13
d1juva_193 Dihydrofolate reductase, prokaryotic type {Bacteri 97.04
d2d30a1124 mono-domain cytidine deaminase {Bacillus anthracis 97.02
d1uwza_130 mono-domain cytidine deaminase {Bacillus subtilis 96.73
d1alna1150 Two-domain cytidine deaminase {Escherichia coli [T 96.65
d2z3ga1123 Blasticidin-S deaminase {Aspergillus terreus [TaxI 96.64
>d2b3wa1 d.336.1.1 (A:1-160) Hypothetical protein YbiA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: YbiA-like
superfamily: YbiA-like
family: YbiA-like
domain: Hypothetical protein YbiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.9e-42  Score=323.61  Aligned_cols=147  Identities=44%  Similarity=0.788  Sum_probs=138.5

Q ss_pred             CCceEEEeccCCCCccCCCCCCCCccccCCCCCeeecCHHHHHHHccccCCCChhhHHHHHHHHhcCCHHHHHHhccccc
Q 039210          447 EPSIIYFYKTWDPYGAFSNFSPHPIQMPDVNGDVTWSSVEHYYQAHKFTGVNDPAAQDFVEKIKTAKSPEEAARLGRSMQ  526 (612)
Q Consensus       447 ~~~~i~F~~~~~~~~~lSN~~~~p~~~~~~~~g~~y~s~Ehy~qa~K~~~~~~~~~~~~~~~I~~~~~p~~ak~lgr~~~  526 (612)
                      ++++|+||+.++||++|||||++||.++    |++|+|+||||||+||..   +   +++++|+.+.+|.+|+++|+++.
T Consensus        13 ~~~~I~F~~~~~~~~~LSN~~~~pf~~d----g~~y~SvEhy~qa~Kf~d---~---~~~~~i~~~~sp~~ak~~gr~~~   82 (160)
T d2b3wa1          13 QDTIINFYSTSDDYGDFSNFAAWPIKVD----GKTWPTSEHYFQAQKFLD---E---KYREEIRRVSSPMVAARMGRDRS   82 (160)
T ss_dssp             SSEEEEECCTTSGGGTTSTTSCCCEEET----TEEESSHHHHHHHHHBCC---H---HHHHHHHHCCCHHHHHHHHCCSS
T ss_pred             CCCEEEEccCCCCCcccccCCCCCEEEC----CEEECCHHHHHHHHccCC---h---HHHHHHHHCcCHHHHHHHhcccc
Confidence            4689999999999999999999999998    899999999999999864   2   56789999999999999999886


Q ss_pred             cCCCCcCccchHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCCceEEEcCCCCCceeecCCCCCccHhhHHHHHHHHHHhc
Q 039210          527 RQHPDWVRSDWESVKIDIMYRALKCKFSIYPHLNSMLLSTGGSVLVEASPHDLFWGGGREGEGLNYLGRLLMQLRSEFLG  606 (612)
Q Consensus       527 ~~~~~~~~~~W~~~~~~im~~~l~~KF~Qn~~lr~~Ll~Tg~~~Lve~s~~D~~WG~g~~~~G~N~LG~iLM~vR~~l~~  606 (612)
                      ++    .+.+|++.+..+|.+||++||+|||+||++|++|||+.|||+++.|.|||+|.++.|+|+||++||+||++|+.
T Consensus        83 ~~----~~~~W~~~k~~iM~~~l~~KF~Qn~~lr~~Ll~Tgd~~Lve~s~~D~~WG~g~~~~G~N~lG~iLM~vR~~L~~  158 (160)
T d2b3wa1          83 KP----LRKNWESVKEQVMRKALRAKFEQHAELRALLLATAPAKLVEHTENDAYWGDGGHGKGKNRLGYLLMELREQLAI  158 (160)
T ss_dssp             SC----BCTTHHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTTEEEEECCSSCCSSSCTTTTCSCTHHHHHHHHHHHHHHH
T ss_pred             cc----ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHhcCCCEEEecCCCCCcccCCCCCCcchHHHHHHHHHHHHHHh
Confidence            54    67999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             C
Q 039210          607 E  607 (612)
Q Consensus       607 ~  607 (612)
                      +
T Consensus       159 ~  159 (160)
T d2b3wa1         159 E  159 (160)
T ss_dssp             H
T ss_pred             c
Confidence            5
>d2b3za1 c.71.1.2 (A:146-359) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2azna1 c.71.1.2 (A:6-224) HTP reductase {Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2hxva2 c.97.1.2 (A:1-147) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2b3za2 c.97.1.2 (A:1-145) Riboflavin biosynthesis protein RibD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2hxva1 c.71.1.2 (A:148-345) Riboflavin biosynthesis protein RibD {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1z3aa1 c.97.1.2 (A:13-168) tRNA adenosine deaminase TadA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wwra1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d2b3ja1 c.97.1.2 (A:1-151) tRNA adenosine deaminase TadA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1p6oa_ c.97.1.2 (A:) Cytosine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wkqa_ c.97.1.2 (A:) Guanine deaminase GuaD {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2a8na1 c.97.1.2 (A:2-131) Cytidine and deoxycytidylate deaminase CodA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2g84a1 c.97.1.2 (A:1-189) Putative deaminase NE0047 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1vq2a_ c.97.1.2 (A:) Deoxycytidylate deaminase {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1d1ga_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vdra_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type {Haloferax volcanii [TaxId: 2246]} Back     information, alignment and structure
>d1seja1 c.71.1.1 (A:3-180) Bifunctional enzyme dihydrofolate reductase-thymidylate synthase, DFR domain {Cryptosporidium hominis [TaxId: 237895]} Back     information, alignment and structure
>d2fzia1 c.71.1.1 (A:1-206) Dihydrofolate reductases, eukaryotic type {Fungus (Pneumocystis carinii) [TaxId: 4754]} Back     information, alignment and structure
>d3dfra_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type {Lactobacillus casei [TaxId: 1582]} Back     information, alignment and structure
>d1j3ka_ c.71.1.1 (A:) Bifunctional enzyme dihydrofolate reductase-thymidylate synthase, DFR domain {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Back     information, alignment and structure
>d1kmva_ c.71.1.1 (A:) Dihydrofolate reductases, eukaryotic type {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ra9a_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1aoea_ c.71.1.1 (A:) Dihydrofolate reductases, eukaryotic type {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1df7a_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1alna2 c.97.1.1 (A:151-294) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1juva_ c.71.1.1 (A:) Dihydrofolate reductase, prokaryotic type {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d2d30a1 c.97.1.1 (A:1-124) mono-domain cytidine deaminase {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1uwza_ c.97.1.1 (A:) mono-domain cytidine deaminase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1alna1 c.97.1.1 (A:1-150) Two-domain cytidine deaminase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2z3ga1 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Aspergillus terreus [TaxId: 33178]} Back     information, alignment and structure